Citrus Sinensis ID: 020571

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320----
Protein Sequence
MNLVENKLESLPASIGCLSSLEFLHLTRNNLSLPELPVLLSHIEARNCKQLQSLPELPSCPEELDTSILESLSKHFRPTASRKLTYFMFTNCLKLNKSGNNILADSQQRIQHRVVALLRQFQQKIQHKVYIEIPDWFSYQSSGSSIAIQLPPHCCNKNFIGFALCVVIQLEEGFDADADECFVKCNYNFEIKTPSETKHADDYCFLFADEFIESDHVLLGFSPCWNVGLPDPDVGHHTTVSFQFSLYYPYLASPRLHKLKCCGVCPAVLNPSKTKPTTLTLKFSASSEAQCSERARTSKSLDRSDEEEVELSPKRICRYQPDTP
Secondary Structure (PSIPRED)
ccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccEEEEcccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccEEEEEccccccccccccEEEEEEEEccccccccccccEEEEEEEEEEccccccccccccEEEcccccccccEEEEEEEcccccccccccccccEEEEEEEEEEccccccccccEEEEEEEEEEEEccccccccccccccccccHHHHHHHHccccccccccHHHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccHHHccccccccccccEEEcccccccccccHHHHHHcccccccHHccccccccccEEEEcccccccEEcccccccccccEEEEcccHHccHHHHHHHHHHHHHHHHHHHccccccccccEccccccccHHHcccccccEEEEEcccccccccccEEEEEEEEEcccccccccccEEEEEEEEEEcccccEEEEccccccccccccccccEEEEEEccccccccccccccccEEEEEEEEEcccccccccEEEEEEccEEEEEEEcccccccccccEcccccccccccccccccccccccccccccccccEEEcccccc
Coil and Loop (DISEMBL)
mnlvenkleslpasigclssleFLHLTrnnlslpelpvLLSHIEARnckqlqslpelpscpeelDTSILESLSkhfrptasrkLTYFMFTNCLKlnksgnnilADSQQRIQHRVVALLRQFQQKIQHKVYIeipdwfsyqssgssiaiqlpphccnknfiGFALCVVIQLeegfdadadecFVKCNynfeiktpsetkhaddycFLFADEfiesdhvllgfspcwnvglpdpdvghhttvsfqfslyypylasprlhklkccgvcpavlnpsktkpttltlkfsasseaQCSERArtsksldrsdeeevelspkricryqpdtp
Flexible Loop (DISEMBL)
MNLVENKLESLPASIGCLSSLEFLHLTRNNLSLPELPVLLSHIEARNCKQLQSLPELPSCPEELDTSILESLSKHFRPTASRKLTYFMFTNCLKLNKSGNNILADSQQRIQHRVVALLRQFQQKIQHKVYIEIPDWFSYQSSGSSIAIQLPPHCCNKNFIGFALCVVIQLEEGFDADADECFVKCNYNFEiktpsetkhADDYCFLFADEFIESDHVLLGFSPCWNVGLPDPDVGHHTTVSFQFSLYYPYLASPRLHKLKCCGVCPAvlnpsktkpttltlkfsasseaqcserartsksldrsdeeevelspkricryqpdtp
Low Complexity Region (SEG)
MNLVENKLESLPASIGCLSSLEFLHLTRNNLSLPELPVLLSHIEARNCKQLQSLPELPSCPEELDTSILESLSKHFRPTASRKLTYFMFTNCLKLNKSGNNILADSQQRIQHRVVALLRQFQQKIQHKVYIEIPDWFSYQSSGSSIAIQLPPHCCNKNFIGFALCVVIQLEEGFDADADECFVKCNYNFEIKTPSETKHADDYCFLFADEFIESDHVLLGFSPCWNVGLPDPDVGHHTTVSFQFSLYYPYLASPRLHKLKCCGVCPAVLNPSktkpttltlkFSASSEAQCSERARTSKSLDRSDEEEVELSPKRICRYQPDTP
Disordered region (IsUnstruct)
************ASIGCLSSLEFLHLTRNNLSLPELPVLLSHIEARNCKQL***********************HFRPTASRKLTYFMFTNCLKLNKSGNNILADSQQRIQHRVVALLRQFQQKIQHKVYIEIPDWFSYQSSGSSIAIQLPPHCCNKNFIGFALCVVIQLEEGFDADADECFVKCNYNFEIKTPSETKHADDYCFLFADEFIESDHVLLGFSPCWNVGLPDPDVGHHTTVSFQFSLYYPYLASPRLHKLKCCGVCPAVLN******************************************************
Disordered Region (DISOPRED)
MNLVENKLESLPASIGCLSSLEFLHLTRNNLSLPELPVLLSHIEARNCKQLQSLPELPSCPEELDTSILESLSKHFRPTASRKLTYFMFTNCLKLNKSGNNILADSQQRIQHRVVALLRQFQQKIQHKVYIEIPDWFSYQSSGSSIAIQLPPHCCNKNFIGFALCVVIQLEEGFDADADECFVKCNYNFEIKTPSETKHADDYCFLFADEFIESDHVLLGFSPCWNVGLPDPDVGHHTTVSFQFSLYYPYLASPRLHKLKCCGVCPAV********************************************************
Disordered Region (DISEMBL)
********ESLPASIGCLSSLEFLHLTRNNLSLPELPVLLSHIEARNCKQLQSLPELPSCPEELDTSILESLSKHFRPTASRKLTYFMFTNCLKLNKSGNNILADSQQRIQHRVVALLRQFQQKIQHKVYIEIPDWFSYQSSGSSIAIQLPPHCCNKNFIGFALCVVIQLEEGFDADADECFVKCNYNFEIKTPSETKHADDYCFLFADEFIESDHVLLGFSPCWNVGLPDPDVGHHTTVSFQFSLYYPYLASPRLHKLKCCGVCPAVLNPSKTKPTTLTLKFS****************************PKRICRYQPDTP
Disordered Region (DISPRO)
MNLVENKLESLPASIGCLSSLEFLHLTRNNLSLPELPVLLSHIEARNCKQLQSLPELPSCPEELDTSILESLSKHFRPTASRKLTYFMFTNCLKLNKSGNNILADSQQRIQHRVVALLRQFQQKIQHKVYIEIPDWFSYQSSGSSIAIQLPPHCCNKNFIGFALCVVIQLEEGFDADADECFVKCNYNFEIKTPSETKHADDYCFLFADEFIESDHVLLGFSPCWNVGLPDPDVGHHTTVSFQFSLYYPYLASPRLHKLKCCGVCPAVLNPS**************************************LSPKR*********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNLVENKLESLPASIGCLSSLEFLHLTRNNLSLPELPVLLSHIEARNCKQLQSLPELPSCPEELDTSILESLSKHFRPTASRKLTYFMFTNCLKLNKSGNNILADSQQRIQHRVVALLRQFQQKIQHKVYIEIPDWFSYQSSGSSIAIQLPPHCCNKNFIGFALCVVIQLEEGFDADADECFVKCNYNFEIKTPSETKHADDYCFLFADEFIESDHVLLGFSPCWNVGLPDPDVGHHTTVSFQFSLYYPYLASPRLHKLKCCGVCPAVLNPSKTKPTTLTLKFSASSEAQCSERARTSKSLDRSDEEEVELSPKRICRYQPDTP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	324	2.2.26 [Sep-21-2011]
Q40392	1144	TMV resistance protein N	N/A	no	0.475	0.134	0.288	1e-07
O82500	1095	Putative disease resistan	no	no	0.416	0.123	0.304	1e-05

>sp|Q40392|TMVRN_NICGU TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1

 Score = 57.4 bits (137), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/180 (28%), Positives = 88/180 (48%), Gaps = 26/180 (14%)

Query: 2    NLVENKLESLPASIGCLSSLEFLHLTRNNL-----SLPELPVLLSHIEARNCKQLQSLPE 56
            NL++     LP  IG LSSL+ L L+RNN      S+ +L  L S ++ ++C++L  LPE
Sbjct: 844  NLIDG---GLPEEIGSLSSLKKLDLSRNNFEHLPSSIAQLGALQS-LDLKDCQRLTQLPE 899

Query: 57   LPSCPEELDTSILESLS-KHFRPTASRKLTYFMFTNCLKLNKSGNNILADSQQRIQHRVV 115
            LP    EL      +L   H+  T  +KL      + +KL+ + N+ + +       + +
Sbjct: 900  LPPELNELHVDCHMALKFIHYLVTKRKKL------HRVKLDDAHNDTMYNLFAYTMFQNI 953

Query: 116  ALLRQ---FQQKIQHKVYI------EIPDWFSYQSSGSSIAIQLPPHC-CNKNFIGFALC 165
            + +R        +   V+       +IP WF +Q   SS+++ LP +      F+GFA+C
Sbjct: 954  SSMRHDISASDSLSLTVFTGQPYPEKIPSWFHHQGWDSSVSVNLPENWYIPDKFLGFAVC 1013

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.
Nicotiana glutinosa (taxid: 35889)

>sp|O82500|Y4117_ARATH Putative disease resistance protein At4g11170 OS=Arabidopsis thaliana GN=At4g11170 PE=2 SV=1

 Score = 50.8 bits (120), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 56/184 (30%), Positives = 83/184 (45%), Gaps = 49/184 (26%)

Query: 3   LVENK-LESLPASIGCLSSLEFLHLTR--NNLSLPELPVLLSHIEARNCKQLQSLPELPS 59
           L ENK LE++P  +  L  L+ + ++   N +SLP+LP  +S + A NC+ LQ       
Sbjct: 772 LRENKELETIPRYLKYLPRLQMIDISYCINIISLPKLPGSVSALTAVNCESLQ------- 824

Query: 60  CPEELDTSILESLSKHFRPTASRKLTYFMFTNCLKLNKSGNNILADSQQRIQHRVVALLR 119
                       L  HFR     K  +  F NCLKL +        +Q++I HR V    
Sbjct: 825 -----------ILHGHFR----NKSIHLNFINCLKLGQR-------AQEKI-HRSVY--- 858

Query: 120 QFQQKIQHKVYI-------EIPDWFSYQSSGSSIAIQLPPHCCNKNFIGFALCVVIQLEE 172
                I    YI        +P +FSY+S+GSSI I       +K F  F +C+V+   +
Sbjct: 859 -----IHQSSYIADVLPGEHVPAYFSYRSTGSSIMIHSNKVDLSK-FNRFKVCLVLGAGK 912

Query: 173 GFDA 176
            F+ 
Sbjct: 913 RFEG 916

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	324
224127917	1470	tir-nbs-lrr resistance protein [Populus	0.719	0.158	0.337	5e-23
224145030	1435	tir-nbs-lrr resistance protein [Populus	0.731	0.165	0.340	2e-22
224103133	397	predicted protein [Populus trichocarpa]	0.790	0.644	0.315	5e-20
224145016	1254	tir-nbs-lrr resistance protein [Populus	0.620	0.160	0.333	4e-19
227438275	1226	disease resistance protein [Brassica rap	0.759	0.200	0.297	1e-18
297794743	1184	predicted protein [Arabidopsis lyrata su	0.731	0.200	0.311	2e-18
240256011	1210	TIR-NBS-LRR class disease resistance pro	0.774	0.207	0.295	3e-18
359496034	1132	PREDICTED: TMV resistance protein N-like	0.626	0.179	0.343	6e-18
296090597	1201	unnamed protein product [Vitis vinifera]	0.626	0.169	0.347	7e-18
255563202	1158	leucine-rich repeat containing protein,	0.527	0.147	0.310	9e-18

>gi|224127917|ref|XP_002329209.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222870990|gb|EEF08121.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 89/264 (33%), Positives = 133/264 (50%), Gaps = 31/264 (11%)

Query: 1    MNLVENKLESLPASIGCLSSLEFLHLTRNNLSLPELPV----LLSHIEARNCKQLQSLPE 56
            +NL    +  +P S+GCLSSLE L L+ NN S   L +     L ++  RNCK+L+SLPE
Sbjct: 960  LNLDGCHISVVPDSLGCLSSLEVLDLSGNNFSTIPLSINKLSELQYLGLRNCKRLESLPE 1019

Query: 57   LPSCPEELDTSILESLSKHFRPTAS---RKLTYFMFTNCLKLNKSGNNILADSQQRIQHR 113
            LP    +LD    ESL+     +++     +  F+FTNCL L +  N IL  + ++ +  
Sbjct: 1020 LPPRLSKLDADNCESLNYLGSSSSTVVKGNIFEFIFTNCLSLCRI-NQILPYALKKFR-L 1077

Query: 114  VVALLRQFQQKIQHKVYIEIPD-----WFSYQSSGSSIAIQLPPHCCNKNFIGFALCVVI 168
                L Q    ++      +P      W S+QS GS++  QL  H  N  F+GF+LC VI
Sbjct: 1078 YTKRLHQLTDVLEGACSFFLPGGVSPQWLSHQSWGSTVTCQLSSHWANSKFLGFSLCAVI 1137

Query: 169  QLEEGFDADADECFVKCNYNFEIKTPSETKHADD---YCFL---FADEFIESDHVLLGFS 222
                 F +      VKC Y+F        +H D    YC+L   + ++ I+S+H+L+GF 
Sbjct: 1138 ----AFHSFGHSLQVKCTYHF------SNEHGDSHDLYCYLHGWYDEKRIDSEHILVGFD 1187

Query: 223  PCWNVGLPDPDVGHHTTVSFQFSL 246
            PC  V   D     ++ VS +F L
Sbjct: 1188 PCL-VAKEDYMFSEYSEVSVEFQL 1210

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145030|ref|XP_002325501.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222862376|gb|EEE99882.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 89/261 (34%), Positives = 128/261 (49%), Gaps = 24/261 (9%)

Query: 1    MNLVENKLESLPASIGCLSSLEFLHLTRNNLSLPELPV----LLSHIEARNCKQLQSLPE 56
            +NL    L  +P S+G LSSLE L L+ NNL    + +     L ++  RNCK+LQSLPE
Sbjct: 999  LNLDGCSLSEVPDSLGLLSSLEVLDLSGNNLRTIPISINKLFELQYLGLRNCKRLQSLPE 1058

Query: 57   LPSCPEELDTSILESLSKHFRPTAS---RKLTYFMFTNCLKLNKSGNNILADSQQRIQHR 113
            LP    +LD    +SL+     +++     +  F+FTNCL+L    N IL  S  + Q  
Sbjct: 1059 LPPRLSKLDVDNCQSLNYLVSRSSTVVEGNIFEFIFTNCLRL-PVVNQILEYSLLKFQLY 1117

Query: 114  VVALLRQFQQKIQHKVYI-----EIPDWFSYQSSGSSIAIQLPPHCCNKNFIGFALCVVI 168
               L  Q     +            P+WFS+QS GS    QL  H  N  F+GF+LC VI
Sbjct: 1118 TKRLYHQLPDVPEGACSFCLPGDVTPEWFSHQSWGSIATFQLSSHWVNSEFLGFSLCAVI 1177

Query: 169  QLEEGFDADADECFVKCNYNFEIKTPSETKHADDYCFLFA---DEFIESDHVLLGFSPCW 225
                 F + +    VKC Y+F  +      H D YC+L+    ++ I+S H+ +GF PC 
Sbjct: 1178 ----AFRSISHSLQVKCTYHF--RNEHGDSH-DRYCYLYGWYDEKRIDSAHIFVGFDPCL 1230

Query: 226  NVGLPDPDVGHHTTVSFQFSL 246
             V   D     ++ VS +F +
Sbjct: 1231 -VAKEDYMFSEYSEVSIEFQV 1250

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224103133|ref|XP_002334087.1| predicted protein [Populus trichocarpa] gi|222869543|gb|EEF06674.1| predicted protein [Populus trichocarpa]

 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 88/279 (31%), Positives = 132/279 (47%), Gaps = 23/279 (8%)

Query: 1   MNLVENKLESLPASIGCLSSLEFLHLTRNNLSLPELPV----LLSHIEARNCKQLQSLPE 56
           +NL    L  +P S+G LSSLE L L+ NNL    + +     L ++  RNC++L+SLPE
Sbjct: 62  LNLDGCSLSKVPGSLGRLSSLEVLDLSGNNLRTIPISMNKLFELQYLGLRNCRRLESLPE 121

Query: 57  LPSCPEELDTSILESLSKHFRPTAS--RKLTYFMFTNCLKLNKSGNNILADSQQRIQHRV 114
           LP    +LD    + L      +      +  F+FT C +L ++ N +LA S  + Q   
Sbjct: 122 LPPRLSKLDAHDCQKLRTVSSSSTGVEGNIFEFIFTRCSRLRET-NQMLAYSLLKFQLYT 180

Query: 115 VALLRQFQQKIQHKVYIEIP-----DWFSYQSSGSSIAIQLPPHCCNKNFIGFALCVVIQ 169
             L  Q     +      +P     +WFS+QS GS++  QL  +  N  F+GF LC VI 
Sbjct: 181 KRLCHQLPDVPEGACTFCLPGDVTPEWFSHQSWGSTVTFQLSSYWANNEFLGFCLCAVI- 239

Query: 170 LEEGFDADADECFVKCNYNFEIKTPSETKHADDYCFL---FADEFIESDHVLLGFSPCWN 226
               F +      VKC Y+F   +       D YC+L   + ++ IES+H+ +GF PC  
Sbjct: 240 ---AFRSFRHGLQVKCTYHF---SNEHGDSHDLYCYLHGWYDEKCIESEHIFVGFDPCLV 293

Query: 227 VGLPDPDVGHH-TTVSFQFSLYYPYLASPRLHKLKCCGV 264
               D    ++  +V FQ    Y  L    L ++  CGV
Sbjct: 294 AKENDMFREYNEVSVKFQLEDMYGNLLPLHLCQVVECGV 332

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145016|ref|XP_002325496.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222862371|gb|EEE99877.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 78/234 (33%), Positives = 115/234 (49%), Gaps = 33/234 (14%)

Query: 8    LESLPASIGCLSSLEFLHLTRNNLSLPELPVL----LSHIEARNCKQLQSLPELPSCPEE 63
            +  +P S+GCLSSLE L L+ NN     + +     L ++  R+C++L+S+P LP    +
Sbjct: 931  ISKVPDSLGCLSSLEVLDLSGNNFETMPMNIYKLVELQYLGLRSCRKLKSIPRLPRRLSK 990

Query: 64   LDTSILESLSKHFRP-TASRKLTYFMFTNCLKLNKSGNNILADSQQRIQ------HRVVA 116
            LD    +SL K          +  F+FTNCL+L    N IL  S  + Q      H+V A
Sbjct: 991  LDAHDCQSLIKVSSSYVVEGNIFEFIFTNCLRL-PVINQILLYSLLKFQLYTERLHQVPA 1049

Query: 117  LLRQFQQKIQHKVYIEIPDWFSYQSSGSSIAIQLPPHCCNKNFIGFALCVVIQLEEGFDA 176
                F   +   V    P+WFS+QS GS++   L  H  N  F+GF+L  VI     F +
Sbjct: 1050 GTSSFC--LPGDV---TPEWFSHQSWGSTVTFHLSSHWANSEFLGFSLGAVI----AFRS 1100

Query: 177  DADECFVKCNYNFEIKTPSETKHADD---YCFL---FADEFIESDHVLLGFSPC 224
                  VKC Y+F        KH D    YC+L   + +  ++S+H+ +GF PC
Sbjct: 1101 FGHSLQVKCTYHF------RNKHGDSHDLYCYLHGWYDERRMDSEHIFIGFDPC 1148

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|227438275|gb|ACP30627.1| disease resistance protein [Brassica rapa subsp. pekinensis]

 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 91/306 (29%), Positives = 139/306 (45%), Gaps = 60/306 (19%)

Query: 1    MNLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSHIEA---RNCKQLQSLPE 56
            M L +  L  LP S  CLS L+ L L+RNN+ +LP     L H+++   ++C+QL SLP 
Sbjct: 851  MYLTDCNLYKLPDSFSCLSLLQTLCLSRNNIKNLPGSIKKLHHLKSLYLKHCQQLVSLPV 910

Query: 57   LPSCPEELDTSILESLSKHFRP-----TASRKLTYFMFTNCLKLNKSGN-NILADSQQRI 110
            LPS  + LD     SL    +P      A R  + F+FT+C KLN+    +I+A +Q + 
Sbjct: 911  LPSNLQYLDAHGCISLETVAKPMTLLVVAERNQSTFVFTDCFKLNRDAQESIVAHTQLKS 970

Query: 111  QHRVVALLRQFQQKIQHKVYI------------EIPDWFSYQSSGSSIAIQLPPHCCNKN 158
            Q     +L     +  HK  +            ++P WF +Q  GSS+   LPPH C+  
Sbjct: 971  Q-----ILGNGSLQRNHKGLVSEPLASASFPGNDLPLWFRHQRMGSSMETHLPPHWCDDK 1025

Query: 159  FIGFALCVVIQLEEGFDADADECFVKCNYNFEIKTPSETKHADDYCFLFADEF------- 211
            FIG +LCVV+  ++         +V     F +    + ++ D  C  F           
Sbjct: 1026 FIGLSLCVVVSFKD---------YVDKTNRFSVICKCKFRNEDGDCISFTCNLGGWKEQC 1076

Query: 212  ------------IESDHVLLGFSPCWNVGLP-DPDVGHHTTVSFQFSLYYPYLASPRLHK 258
                        + SDHV + ++ C++     D +   +TT SF+F  +     S R  K
Sbjct: 1077 GSSSSREEEPRKLTSDHVFISYNNCFHAKKSHDLNRCCNTTASFKF--FVTDGVSKR--K 1132

Query: 259  LKCCGV 264
            L CC V
Sbjct: 1133 LDCCEV 1138

Source: Brassica rapa subsp. pekinensis

Species: Brassica rapa

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297794743|ref|XP_002865256.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297311091|gb|EFH41515.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 86/276 (31%), Positives = 130/276 (47%), Gaps = 39/276 (14%)

Query: 3    LVENKLESLPASIGCLSSLEFLHLTRNNLS-LPELPVLLSHIEA---RNCKQLQSLPELP 58
            L +  L  LP +  CLSS+  L L+RNNL  LPE   +L H+++   ++C++L SLP LP
Sbjct: 744  LTDCNLHKLPNNFSCLSSVHSLCLSRNNLEYLPESIKILHHLKSLDLKHCRKLNSLPVLP 803

Query: 59   SCPEELDTSILESLSKHFRPT-----ASRKLTYFMFTNCLKLNKSGN-NILADSQQRIQH 112
            S  + LD     SL     P      A R  + F+FT+C KLN+    NI+A +Q + Q 
Sbjct: 804  SNLQYLDAHDCASLETVANPMTHLVLAERVQSTFLFTDCFKLNREAQENIVAHAQLKSQI 863

Query: 113  RVVALLRQFQQKIQHKVYI------------EIPDWFSYQSSGSSIAIQLPPHCCNKNFI 160
               A L++      HK  +            ++P WF  Q  G+SI   LPPH C+  F 
Sbjct: 864  LANACLKR-----NHKGLVLEPLASVSFPGSDLPLWFRNQRMGTSIDTHLPPHWCDSKFR 918

Query: 161  GFALCVVIQLEEGFDADADECFV-KCNYNFE----IKTPSETKHADDYCFLFADEF--IE 213
            G +LCVV+  ++  D  +    + KC +  E    I+        +  C     +   + 
Sbjct: 919  GLSLCVVVSFKDYEDQTSRFSVICKCKFKSESGDCIRFICTLGGWNKLCGSSGHQSRKLG 978

Query: 214  SDHVLLGFSPCWNVGLPDPDVGH-----HTTVSFQF 244
            SDHV L ++ C++V     D        +T  SF+F
Sbjct: 979  SDHVFLSYNNCFHVKKFREDGNDNNRCCNTAASFKF 1014

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|240256011|ref|NP_193686.5| TIR-NBS-LRR class disease resistance protein [Arabidopsis thaliana] gi|332658792|gb|AEE84192.1| TIR-NBS-LRR class disease resistance protein [Arabidopsis thaliana]

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 89/301 (29%), Positives = 138/301 (45%), Gaps = 50/301 (16%)

Query: 8    LESLPASIGCLSSLEFLHLTRNNL-SLPE---LPVLLSHIEARNCKQLQSLPELPSCPEE 63
            ++ LP     L SL  L L+RNN+ +LPE       L  ++ ++C +L+SLP LPS  + 
Sbjct: 856  IDKLPDKFSSLRSLRCLCLSRNNIETLPESIEKLYSLLLLDLKHCCRLKSLPLLPSNLQY 915

Query: 64   LDTSILESLSKHFRP-----TASRKLTYFMFTNCLKLNKS-GNNILADSQQRIQHRVVAL 117
            LD     SL    +P        R  T F+FT+C KLN++   +I+A +Q + Q     L
Sbjct: 916  LDAHGCGSLENVSKPLTIPLVTERMHTTFIFTDCFKLNQAEKEDIVAQAQLKSQ-----L 970

Query: 118  LRQFQQKIQHKVYI------------EIPDWFSYQSSGSSIAIQLPPHCCNKNFIGFALC 165
            L +  +   HK  +            +IP WFS+Q  GS I   L PH CN  FIG +LC
Sbjct: 971  LARTSRHHNHKGLLLDPLVAVCFPGHDIPSWFSHQKMGSLIETDLLPHWCNSKFIGASLC 1030

Query: 166  VVIQLEEGFDADADECFVKCNYNFEIKTPSETKHADDYCFLFADEF----------IESD 215
            VV+  ++     A+   V+C   F+ +       +  +C    +E           + SD
Sbjct: 1031 VVVTFKDHEGHHANRLSVRCKSKFKSQNGQFISFS--FCLGGWNESCGSSCHEPRKLGSD 1088

Query: 216  HVLLGFSPC------WNVGLPDPDVGHHTTVSFQFSLYYPYLASPRLHKLKCCGVCPAVL 269
            HV + ++ C      W+    + +  H T+ SF+F     YL      KL+CC +    +
Sbjct: 1089 HVFISYNNCNVPVFKWSEETNEGNRCHPTSASFEF-----YLTDETERKLECCEILRCGM 1143

Query: 270  N 270
            N
Sbjct: 1144 N 1144

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359496034|ref|XP_002277500.2| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 79/230 (34%), Positives = 116/230 (50%), Gaps = 27/230 (11%)

Query: 15   IGCLSSLEFLHLTRNN-LSLP----ELPVLLSHIEARNCKQLQSLPELPSCPEELDTSIL 69
            +  LSSLE+L L+ NN +SLP    +L  L+S ++ +NC++LQ+L ELPS  +E+D    
Sbjct: 784  LAILSSLEYLDLSGNNFISLPSSMSQLSQLVS-LKLQNCRRLQALSELPSSIKEIDAHNC 842

Query: 70   ESLSKHFRPTASRKLTYFMFTNCLKLNKSGNNILADSQQRIQHRVVALLRQFQQKIQHKV 129
             SL      +    L +  F  CLK+    NNI +  Q            ++ +     V
Sbjct: 843  MSLETISNRSLFPSLRHVSFGECLKIKTYQNNIGSMLQALATFLQTHKRSRYARDNPESV 902

Query: 130  YIE---------IPDWFSYQSSGSSIAIQLPPHCCNKNFIGFALCVVIQLEEGFDADAD- 179
             IE         IPDWFSYQSSG+ + I+LPP+  N NF+GFAL  V     GFD   D 
Sbjct: 903  TIEFSTVVPGSEIPDWFSYQSSGNVVNIELPPNWFNSNFLGFALSAVF----GFDPLPDY 958

Query: 180  ----ECF-VKCNYNFEIKTPSETKHADDYCFLFADEFIESDHVLLGFSPC 224
                + F + C ++F+    S   +   + +      IESDH+ LG++P 
Sbjct: 959  NPNHKVFCLFCIFSFQNSAASYRDNV--FHYNSGPALIESDHLWLGYAPV 1006

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296090597|emb|CBI40966.3| unnamed protein product [Vitis vinifera]

 Score = 97.4 bits (241), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 80/230 (34%), Positives = 114/230 (49%), Gaps = 27/230 (11%)

Query: 15   IGCLSSLEFLHLTRNNL-----SLPELPVLLSHIEARNCKQLQSLPELPSCPEELDTSIL 69
            +  LSSLE+L L+ NN      S+ +L  L+S ++ +NC++LQ+L ELPS  +E+D    
Sbjct: 810  LAILSSLEYLDLSGNNFISLPSSMSQLSQLVS-LKLQNCRRLQALSELPSSIKEIDAHNC 868

Query: 70   ESLSKHFRPTASRKLTYFMFTNCLKLNKSGNNI------LADSQQRIQHRVVALLRQFQQ 123
             SL      +    L +  F  CLK+    NNI      LA   Q  +    A       
Sbjct: 869  MSLETISNRSLFPSLRHVSFGECLKIKTYQNNIGSMLQALATFLQTHKRSRYARDNPESV 928

Query: 124  KIQHKVYI---EIPDWFSYQSSGSSIAIQLPPHCCNKNFIGFALCVVIQLEEGFDADAD- 179
             I+    +   EIPDWFSYQSSG+ + I+LPP+  N NF+GFAL  V     GFD   D 
Sbjct: 929  TIEFSTVVPGSEIPDWFSYQSSGNVVNIELPPNWFNSNFLGFALSAVF----GFDPLPDY 984

Query: 180  ----ECF-VKCNYNFEIKTPSETKHADDYCFLFADEFIESDHVLLGFSPC 224
                + F + C ++F+    S   +   Y        IESDH+ LG++P 
Sbjct: 985  NPNHKVFCLFCIFSFQNSAASYRDNVFHYN--SGPALIESDHLWLGYAPV 1032

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255563202|ref|XP_002522604.1| leucine-rich repeat containing protein, putative [Ricinus communis] gi|223538080|gb|EEF39691.1| leucine-rich repeat containing protein, putative [Ricinus communis]

 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 64/206 (31%), Positives = 107/206 (51%), Gaps = 35/206 (16%)

Query: 1    MNLVENKLESLPASIGCLSSLEFLHLT--RNNLSLPELPVLLSHIEARNCKQLQSLPELP 58
            +NL  +  +++PA I  LS L ++++T  +   SLPELP  + ++ AR+C+ L S+  L 
Sbjct: 867  LNLSGSNFDTMPAGINQLSKLRWINVTGCKRLQSLPELPPRIRYLNARDCRSLVSISGLK 926

Query: 59   -----SCPEELDTSILESLSKHFRPTASRKLTYFMFTNCLKLNKSG-NNILADSQQRIQH 112
                  C   LD                     F+FTNC KL++    +ILA +Q +IQH
Sbjct: 927  QLFELGCSNSLDDET------------------FVFTNCFKLDQDNWADILASAQLKIQH 968

Query: 113  RVVALLRQFQQKIQHKVYI-------EIPDWFSYQSSGSSIAIQ-LPPHCCNKNFIGFAL 164
              +   + + +++  + +I       EIP+WF+ +S GSS+ IQ LPP   N  F+GF++
Sbjct: 969  FAMGR-KHYDRELYDETFICFTYPGTEIPEWFADKSIGSSVTIQHLPPDWLNHRFLGFSV 1027

Query: 165  CVVIQLEEGFDADADECFVKCNYNFE 190
            C+V+  ++ F  +     V C  NF+
Sbjct: 1028 CLVVAFDDRFLCEYPRGVVACKCNFQ 1053

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	324
TAIR|locus:2122965	1210	AT4G19510 [Arabidopsis thalian	0.790	0.211	0.293	5.6e-20
TAIR|locus:2118106	1219	AT4G12010 [Arabidopsis thalian	0.839	0.223	0.284	1.3e-19
TAIR|locus:2155322	1170	LAZ5 "LAZARUS 5" [Arabidopsis	0.712	0.197	0.292	8.7e-15
TAIR|locus:2122209	1179	AT4G36150 [Arabidopsis thalian	0.657	0.180	0.297	1.8e-14
TAIR|locus:2122925	417	AT4G19470 [Arabidopsis thalian	0.666	0.517	0.301	3.7e-14
TAIR|locus:2153328	1231	AT5G45230 [Arabidopsis thalian	0.666	0.175	0.295	2.5e-13
TAIR|locus:2158475	1217	RPS4 "RESISTANT TO P. SYRINGAE	0.552	0.147	0.276	1.3e-10
TAIR|locus:2153363	1261	AT5G45200 [Arabidopsis thalian	0.694	0.178	0.274	1.3e-10
TAIR|locus:2170333	1197	CSA1 "constitutive shade-avoid	0.617	0.167	0.259	2.1e-10
TAIR|locus:2122985	1167	AT4G19530 [Arabidopsis thalian	0.530	0.147	0.305	5e-09

TAIR|locus:2122965 AT4G19510 [Arabidopsis thaliana (taxid:3702)]

 Score = 238 (88.8 bits), Expect = 5.6e-20, Sum P(2) = 5.6e-20
 Identities = 86/293 (29%), Positives = 140/293 (47%)

Query:     6 NKLESLPASIGCLSSLEFLHLTRNNLSLPELPVLLSHIEARNCKQLQSLPELPSCPEELD 65
             +K  SL  S+ CL  L   ++     S+ +L  LL  ++ ++C +L+SLP LPS  + LD
Sbjct:   861 DKFSSL-RSLRCLC-LSRNNIETLPESIEKLYSLLL-LDLKHCCRLKSLPLLPSNLQYLD 917

Query:    66 T---SILESLSKHFR-PTASRKL-TYFMFTNCLKLNKSGN-NILADSQQRIQHRVVALLR 119
                   LE++SK    P  + ++ T F+FT+C KLN++   +I+A +Q + Q  +    R
Sbjct:   918 AHGCGSLENVSKPLTIPLVTERMHTTFIFTDCFKLNQAEKEDIVAQAQLKSQ-LLARTSR 976

Query:   120 QFQQK---IQHKVYI-----EIPDWFSYQSSGSSIAIQLPPHCCNKNFIGFALCVVIQLE 171
                 K   +   V +     +IP WFS+Q  GS I   L PH CN  FIG +LCVV+  +
Sbjct:   977 HHNHKGLLLDPLVAVCFPGHDIPSWFSHQKMGSLIETDLLPHWCNSKFIGASLCVVVTFK 1036

Query:   172 EGFDADADECFVKCNYNFEIKTPSETKHA------DDYCFLFADE--FIESDHVLLGFSP 223
             +     A+   V+C   F+ +       +      ++ C     E   + SDHV + ++ 
Sbjct:  1037 DHEGHHANRLSVRCKSKFKSQNGQFISFSFCLGGWNESCGSSCHEPRKLGSDHVFISYNN 1096

Query:   224 C------WNVGLPDPDVGHHTTVSFQFSLYYPYLASPRLHKLKCCGVCPAVLN 270
             C      W+    + +  H T+ SF+F     YL      KL+CC +    +N
Sbjct:  1097 CNVPVFKWSEETNEGNRCHPTSASFEF-----YLTDETERKLECCEILRCGMN 1144

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2118106 AT4G12010 [Arabidopsis thaliana (taxid:3702)]

 Score = 247 (92.0 bits), Expect = 1.3e-19, P = 1.3e-19
 Identities = 87/306 (28%), Positives = 143/306 (46%)

Query:    40 LSHIEARNCKQLQSLPELPSCPEELDT---SILESLSKHFRP-TASRKL-TYFMFTNCLK 94
             L   + + CK L+SLP LP   + LD      LE+L+    P T   ++ + F+F+NC K
Sbjct:   903 LKWFDLKFCKMLKSLPVLPQNLQYLDAHECESLETLANPLTPLTVGERIHSMFIFSNCYK 962

Query:    95 LNKSGNNILADSQQRIQHRVVA---LLRQFQQKIQHKV----Y--IEIPDWFSYQSSGSS 145
             LN+     L     RI+ +++A     R ++  +   +    Y   EIP WF +Q  G S
Sbjct:   963 LNQDAQASLV-GHARIKSQLMANASAKRYYRGFVPEPLVGICYPATEIPSWFCHQRLGRS 1021

Query:   146 IAIQLPPHCCNKNFIGFALCVVIQLEEGFDADADECFVKCNYNFEIKTPSETKHA----- 200
             + I LPPH C+ NF+G AL VV+  ++ ++  A    VKC  NFE K  S T+       
Sbjct:  1022 LEIPLPPHWCDINFVGLALSVVVSFKD-YEDSAKRFSVKCCGNFENKDSSFTRFDFTLAG 1080

Query:   201 -DDYCFLFADEF--IESDHVLLGFSPCWNVGLPDPDVGH--HTTVSFQFSLYYPYLASPR 255
              ++ C   + E   + SDHV +G++ C+ V     +     +T  SF+F     Y+    
Sbjct:  1081 WNEPCGSLSHESRKLTSDHVFMGYNSCFLVKNVHGESNSCCYTKASFEF-----YVTDDE 1135

Query:   256 LHK-LKCCGVCPAVLNPSXXXXXXXXXXFSASSEAQCSERARTSKSLDRSDEEEVELSPK 314
               K ++ C V    ++               ++  Q S ++  S S D  D  + ++ PK
Sbjct:  1136 TRKKIETCEVIKCGMSLMYVPEDDDCMLLKKTNIVQLSLKSGPSCSYDLDDVMD-DVRPK 1194

Query:   315 R-ICRY 319
             R +C++
Sbjct:  1195 RGLCQF 1200

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

TAIR|locus:2155322 LAZ5 "LAZARUS 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 216 (81.1 bits), Expect = 8.7e-15, Sum P(2) = 8.7e-15
 Identities = 76/260 (29%), Positives = 111/260 (42%)

Query:     7 KLESLPASIGCLS-SLEFLHLTRNNLSLPELPVLLSHIEARNCKQLQSLPELPSCPEELD 65
             K++SL     CLS ++  ++L  N      L  L+     +NC+ L+ LP LP C E L+
Sbjct:   879 KIKSLKCL--CLSRNIAMVNLQDNLKDFSNLKCLVM----KNCENLRYLPSLPKCLEYLN 932

Query:    66 TSILESLSKHFRPTASRKLTYFM-----------FTNCLKLNKSGNNILADSQQRIQHRV 114
                 E L     P  + +LT F+           FTNC  L +   + ++   +   HR+
Sbjct:   933 VYGCERLESVENPLVADRLTLFLDRSEELRSTFLFTNCHNLFQDAKDSISTYAKWKCHRL 992

Query:   115 VALLRQFQQKIQHKVYIE-------IPDWFSYQSSGSSIAIQLPPHCCNKNFIGFALCVV 167
                +  ++Q I    +         +P WF +Q+ GS +  +L PH  N    G ALC V
Sbjct:   993 A--VECYEQDIVSGAFFNTCYPGYIVPSWFDHQAVGSVLEPRLEPHWYNTMLSGIALCAV 1050

Query:   168 IQLEEGFDADADECFVKCNYNFEIKTPSETKHADDYCFLFADEFIESDHVLLGFSPCWNV 227
             +   E  D       VKC   FE +  S     D  C L     IE+DHV +G+  C  +
Sbjct:  1051 VSFHENQDPIIGSFSVKCTLQFENEDGSLRFDCDIGC-LNEPGMIEADHVFIGYVTCSRL 1109

Query:   228 GLPDPDVGHH-TTVSFQFSL 246
                     HH TTV  QF L
Sbjct:  1110 KDHHSIPIHHPTTVKMQFHL 1129

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0051607 "defense response to virus" evidence=IMP

TAIR|locus:2122209 AT4G36150 [Arabidopsis thaliana (taxid:3702)]

 Score = 212 (79.7 bits), Expect = 1.8e-14, P = 1.8e-14
 Identities = 71/239 (29%), Positives = 116/239 (48%)

Query:     4 VENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPV-LLSHI---EARNCKQLQSLPELP 58
             VE+ L  L   I  LSSL  L L+RNN+ S  ++ +  L H+   + + CK L S+P LP
Sbjct:   839 VED-LPELRRGINGLSSLRRLCLSRNNMISNLQIDINQLYHLKWLDLKYCKNLTSIPLLP 897

Query:    59 SCPEELDTSILESLSKHFRPTASRKL-----TYFMFTNCLKLNKSGNNILADSQQRIQHR 113
                E LD    E L     P A  KL     + F+FTNC  L +   N +    QR + +
Sbjct:   898 PNLEILDAHGCEKLKTVASPMALLKLMEQVQSKFIFTNCNNLEQVAKNSITSYAQR-KSQ 956

Query:   114 VVALLRQFQQKIQHKVYI------EIPDWFSYQSSGSSIAIQLPPHCCNKNFIGFALCVV 167
             + A     +  +   ++I      ++P WF+YQ+ GS++ ++LPPH C+      ALC V
Sbjct:   957 LDARRCYKEGGVSEALFIACFPGSDVPSWFNYQTFGSALRLKLPPHWCDNRLSTIALCAV 1016

Query:   168 IQLEEGFDADADECFVKCNYNFEIKTPSETKHADDYCFL----FADEFIESDHVLLGFS 222
             +   +  D + +   ++C   F+ +  +  + +   C L         I+SDHV +G++
Sbjct:  1017 VTFPDTQD-EINRFSIECTCEFKNELGTCIRFS---CTLGGSWIESRKIDSDHVFIGYT 1071

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0001666 "response to hypoxia" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

TAIR|locus:2122925 AT4G19470 [Arabidopsis thaliana (taxid:3702)]

 Score = 203 (76.5 bits), Expect = 3.7e-14, P = 3.7e-14
 Identities = 77/255 (30%), Positives = 119/255 (46%)

Query:    40 LSHIEARNCKQLQSLPELPSCPE-ELDTSI-LESLSKHFRPTASRKLTY--FMFTNCLKL 95
             L  +  +NCK L SLP LPS    ++   I LE++SK        + T+  F+FT+C KL
Sbjct:    77 LKSLYLKNCKNLISLPVLPSNQYLDVHGCISLETVSKPMTLLVIAEKTHSTFVFTDCYKL 136

Query:    96 NKSGNN-ILADSQQRIQHRVVALLRQFQ--QKIQH-KVYIE-----------IPDWFSYQ 140
             N+     I+A +Q + Q   +   R FQ   K+Q  ++ +E           +P WF +Q
Sbjct:   137 NRDAQEKIVAHTQLKSQ---ILANRSFQLNHKVQSLELVLEPLSAVSFPGNDLPLWFRHQ 193

Query:   141 SSGSSIAIQLPPHCCNKNFIGFALCVVIQLEEGFDADADECFV-KCNYNFE----IKTPS 195
               GSS+   LP H C+  FIG +LC V+  ++  D  +    + KC +  E    I    
Sbjct:   194 RIGSSMETNLPSHWCDDKFIGLSLCTVVSFKDYEDRTSRFSVICKCKFRNEDGDYISFTC 253

Query:   196 ETKHADDYCFLFADEF---IESDHVLLGFSPCWNVGLPDPDVGH--HTTVSFQFSLYYPY 250
                   + C   + E    + SDHV + +S C++    D D+    +TT SF+F     +
Sbjct:   254 NLGGWKEQCGSSSHEESRRLSSDHVFISYSNCYHAKKND-DLNRCCNTTASFKF-----F 307

Query:   251 LASPRL-HKLKCCGV 264
             +   R   KL CC V
Sbjct:   308 VTDGRAKRKLDCCEV 322

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2153328 AT5G45230 [Arabidopsis thaliana (taxid:3702)]

 Score = 203 (76.5 bits), Expect = 2.5e-13, P = 2.5e-13
 Identities = 71/240 (29%), Positives = 118/240 (49%)

Query:     8 LESLPASIGCLSSLEFLHLTRNNLSLPELPVLLSH------IEARNCKQLQSLPELPSCP 61
             +  LP SI  LSSL  L L+RN+ ++  L   + H      +E + CK L SLP LP   
Sbjct:   831 IAELPCSIFHLSSLRRLCLSRND-NIRTLRFDMGHMFHLKWLELKYCKNLTSLPILPPNL 889

Query:    62 EELD----TSILESLSKHFRPTASRKL-TYFMFTNCLKLNKSGNNILADSQQRIQHRVVA 116
             + L+    TS+    S    PT + ++ + F+FTNC +L +   N +    Q+ + ++++
Sbjct:   890 QCLNAHGCTSLRTVASPQTLPTPTEQIHSTFIFTNCHELEQVSKNAIISYVQK-KSKLMS 948

Query:   117 LLRQFQQKIQHKVYI-------EIPDWFSYQSSGSSIAIQLPPHCCNKNFIGFALCVVIQ 169
               R +     +K  I       EIP WF++Q+ GS + ++LP    +   IG ALCVV+ 
Sbjct:   949 ADR-YSPDFVYKSLIGTCFPGCEIPAWFNHQALGSVLILELPQAWNSSRIIGIALCVVVS 1007

Query:   170 LEEGFDADADECFVKCNYNFEIKTPSETKHADDYCFLFADEF--IESDHVLLGFSPCWNV 227
              +E  D ++    V+C   F   + S+            DE   +ESDH+ +G++   N+
Sbjct:  1008 FKEYRDQNSS-LQVQCTCEFTNVSLSQESFMVGGWSEQGDETHTVESDHIFIGYTTLLNI 1066

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2158475 RPS4 "RESISTANT TO P. SYRINGAE 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 163 (62.4 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
 Identities = 57/206 (27%), Positives = 93/206 (45%)

Query:    40 LSHIEARNCKQLQSLPELP---SCPEELDTSILESLSK---HFRPTASRKLTYFMFTNCL 93
             L  ++ + C  L S+PE P    C +    S L+++SK      PT     T F+FTNC 
Sbjct:   864 LKWLDLKYCTSLTSVPEFPPNLQCLDAHGCSSLKTVSKPLARIMPTEQNHST-FIFTNCE 922

Query:    94 KLNKSGNN-ILADSQQRIQHRVVALLRQFQQKIQHKVY------IEIPDWFSYQSSGSSI 146
              L ++    I + +Q++ Q    A  R     +   ++       E+P WF +++ GS +
Sbjct:   923 NLEQAAKEEITSYAQRKCQLLSYARKRYNGGLVSESLFSTCFPGCEVPSWFCHETVGSEL 982

Query:   147 AIQLPPHCCNKNFIGFALCVVIQLEEGFDADADECFVKCNYNFEIKTPSETKHADDY-CF 205
              ++L PH  +K   G ALC V+   +  D       V C   F++K   E K    Y C 
Sbjct:   983 EVKLLPHWHDKKLAGIALCAVVSCLDPQD-QVSRLSVTCT--FKVK--DEDKSWVAYTCP 1037

Query:   206 LFA-------DEFIESDHVLLGFSPC 224
             + +        + IE DHV +G++ C
Sbjct:  1038 VGSWTRHGGGKDKIELDHVFIGYTSC 1063

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0004872 "receptor activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0012505 "endomembrane system" evidence=IDA

GO:0009870 "defense response signaling pathway, resistance gene-dependent" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0042742 "defense response to bacterium" evidence=IDA

TAIR|locus:2153363 AT5G45200 [Arabidopsis thaliana (taxid:3702)]

 Score = 180 (68.4 bits), Expect = 1.3e-10, P = 1.3e-10
 Identities = 73/266 (27%), Positives = 122/266 (45%)

Query:     1 MNLVENKLESLPASIGCLSSLEFLHLT--RNNLSLPELPVLLSHIEARNCKQLQSLPELP 58
             ++L  N+   LP SIG L  L +L L   +N +S+P LP  L  ++A  C  L+++  L 
Sbjct:   876 LSLSSNEFRILPRSIGYLYHLNWLDLKHCKNLVSVPMLPPNLQWLDAHGCISLETISILS 935

Query:    59 SCPEELDTSILESLSKHFRPTASRKLTYFMFTNCLKLNK-SGNNILADSQQRIQHRVVAL 117
                   D  + E+  +H   T       F+FTNC KL K   N+I +  +++IQ    AL
Sbjct:   936 ------DPLLAET--EHLHST-------FIFTNCTKLYKVEENSIESYPRKKIQLMSNAL 980

Query:   118 LRQFQQKIQHKVYI-------EIPDWFSYQSSGSSIAIQLPPHCCNKNFIGFALCVVIQL 170
              R +++ +   V I       ++P WF++++ G  +   LP H       G ALC V+  
Sbjct:   981 AR-YEKGLALDVLIGICFPGWQVPGWFNHRTVGLELKQNLPRHWNAGGLAGIALCAVVSF 1039

Query:   171 EEGFDADADECFVKCNYNFEIKTPSETKHADDY-CFL--------FADEFIESDHVLLGF 221
             ++ + +  +   V C+  F+     E K    + C L        +    I+SDHV +G+
Sbjct:  1040 KD-YISKNNRLLVTCSGEFK----KEDKTLFQFSCILGGWTEHGSYEAREIKSDHVFIGY 1094

Query:   222 SPCWNVGLPDPDVGHHTT-VSFQFSL 246
             +   N    D  +G   T  S +F +
Sbjct:  1095 TSWLNFMKSDDSIGCVATEASLRFQV 1120

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2170333 CSA1 "constitutive shade-avoidance1" [Arabidopsis thaliana (taxid:3702)]

 Score = 178 (67.7 bits), Expect = 2.1e-10, P = 2.1e-10
 Identities = 60/231 (25%), Positives = 104/231 (45%)

Query:     7 KLESLPASIGCLSSLEFLHLT--RNNLSLPELPVLLSHIEARNCKQLQSLPELPSCPEEL 64
             K+  LP  +   S L++LHL   +N   +P+LP  L ++    C  L+++ +   C   +
Sbjct:   852 KISRLPDLLNKFSQLQWLHLKYCKNLTHVPQLPPNLQYLNVHGCSSLKTVAKPLVCSIPM 911

Query:    65 DTSILESLSKHFRPTASRKLTYFMFTNCLKLNKSGNNILADSQQRIQHRVVALLRQFQQK 124
                      KH   +       F+FTNC +L ++    +    +R  H + + L++  + 
Sbjct:   912 ---------KHVNSS-------FIFTNCNELEQAAKEEIVVYAERKCHLLASALKRCDES 955

Query:   125 IQHKVYI-------EIPDWFSYQSSGSSIAIQLPPHCCNKNFIGFALCVVIQLEEGFDAD 177
                ++         E+P WFS+ + GS +  +LPPH  +    G ALCVV+  +    + 
Sbjct:   956 CVPEILFCTSFPGCEMPSWFSHDAIGSMVEFELPPHWNHNRLSGIALCVVVSFKN-CKSH 1014

Query:   178 ADECFVK--CNYNF-EIKTPSETKHADDYCFLF-ADEFIESDHVLLGFSPC 224
             A+   VK  C  N  E  + S T            +E +ESDHV +G++ C
Sbjct:  1015 AN-LIVKFSCEQNNGEGSSSSITWKVGSLIEQDNQEETVESDHVFIGYTNC 1064

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009416 "response to light stimulus" evidence=IMP

GO:0010114 "response to red light" evidence=IMP

GO:0042742 "defense response to bacterium" evidence=IMP

TAIR|locus:2122985 AT4G19530 [Arabidopsis thaliana (taxid:3702)]

 Score = 171 (65.3 bits), Expect = 5.0e-09, Sum P(2) = 5.0e-09
 Identities = 61/200 (30%), Positives = 91/200 (45%)

Query:    18 LSSLEFLHLTRNN-LSLPELPV-LLSHI---EARNCKQLQSLPELPSCPEELDTSILESL 72
             +SSLE L L+RN  +S     + LLS +   + + C +L S+PELP+  + LD +  ESL
Sbjct:   844 ISSLERLCLSRNEKISCLSNDIRLLSQLKWLDLKYCTKLVSIPELPTNLQCLDANGCESL 903

Query:    73 SKHFRPTASRKLTY-----FMFTNCLKLNKSGNNILADSQQRIQHRVVALLRQFQQKIQH 127
             +    P A+   T      F+FTNC KL+++                 AL   F      
Sbjct:   904 TTVANPLATHLPTEQIHSTFIFTNCDKLDRTAKEGFVPE---------AL---FSTCFPG 951

Query:   128 KVYIEIPDWFSYQSSGSSIAIQLPPHCCNKNFIGFALCVVIQLEEGFDADADECFVKCNY 187
                 E+P WF +++ GS + + L PH     F+G ALC V+          + C V C +
Sbjct:   952 ---CEVPSWFCHEAVGSVLKLNLLPHWNENRFVGIALCAVVGSLPNCQEQTNSCSVTCTF 1008

Query:   188 NFEIKTPSETKHADDYCFLF 207
             N   K   ++K  D Y   F
Sbjct:  1009 NIASK---DSKKGDPYKISF 1025

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009870 "defense response signaling pathway, resistance gene-dependent" evidence=IDA

GO:0009637 "response to blue light" evidence=RCA

GO:0010155 "regulation of proton transport" evidence=RCA

GO:0016556 "mRNA modification" evidence=RCA

GO:0046777 "protein autophosphorylation" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	324
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.93
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.13
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	97.52
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.49
PLN03150	623	hypothetical protein; Provisional	97.49
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	97.48
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	97.42
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	97.41
PRK15386	426	type III secretion protein GogB; Provisional	97.36
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.33
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	97.32
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.27
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	97.26
PRK15386	426	type III secretion protein GogB; Provisional	97.15
PLN03150	623	hypothetical protein; Provisional	97.01
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	96.93
KOG0472	565	consensus Leucine-rich repeat protein [Function un	96.75
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	96.74
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	96.68
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	96.67
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	96.65
KOG0617	264	consensus Ras suppressor protein (contains leucine	96.59
KOG0617	264	consensus Ras suppressor protein (contains leucine	96.34
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	96.23
KOG0472	565	consensus Leucine-rich repeat protein [Function un	96.17
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.12
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	95.91
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	95.5
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	95.36
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	95.17
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	95.16
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	95.06
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	94.24
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	93.55
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	92.5
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	92.27
smart00370	26	LRR Leucine-rich repeats, outliers.	92.12
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	92.12
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	91.81
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	90.79
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	90.37
KOG4237	498	consensus Extracellular matrix protein slit, conta	89.49
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	89.12
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	89.06
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	88.02
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	87.56
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	86.79
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	82.66
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	82.54
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	81.94
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	80.96

>PLN03210 Resistant to P

Probab=99.93  E-value=5.4e-25  Score=239.42  Aligned_cols=257  Identities=20%  Similarity=0.248  Sum_probs=157.7

Q ss_pred             CeecCC-CCCccchhhcCCCCCCEEEccCC-Cc-cCCcccccCCc---cccccccccCcCCCCCCC--------------
Q 020571            1 MNLVEN-KLESLPASIGCLSSLEFLHLTRN-NL-SLPELPVLLSH---IEARNCKQLQSLPELPSC--------------   60 (324)
Q Consensus         1 ~~L~~~-~l~~lP~~i~~l~~L~~L~L~~n-~~-~lP~~i~~L~~---L~l~~C~~L~~lP~lp~s--------------   60 (324)
                      |+|++| .+.++|.+++++++|+.|+|++| ++ .||..+ ++++   |+|++|.+|+.+|.++.+              
T Consensus       783 L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~i  861 (1153)
T PLN03210        783 LFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEV  861 (1153)
T ss_pred             eeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECCCCCCccC
Confidence            356666 56678888888888888888887 45 888765 3443   778888777777654433              


Q ss_pred             ---------CcEEecCCCCCCCccCCCCCc-ccccceeccCCcccchhhhhhhhHH------------------------
Q 020571           61 ---------PEELDTSILESLSKHFRPTAS-RKLTYFMFTNCLKLNKSGNNILADS------------------------  106 (324)
Q Consensus        61 ---------L~~L~~~~C~sL~~~~~~~~~-~~~~~l~~~nC~~L~~~~~~~i~~~------------------------  106 (324)
                               |+.|++.+|..|+.++..... ..+..+.|.+|.+|.......+...                        
T Consensus       862 P~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~  941 (1153)
T PLN03210        862 PWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCF  941 (1153)
T ss_pred             hHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhcccccccc
Confidence                     444555556666655543221 2233444555554432111000000                        


Q ss_pred             -----HHHHHHHHHHHHHHhhccccceeeeecCCcccccCCCceEE-EeCCCCCCCCcccceeEEEEEeecCCCCCCCCC
Q 020571          107 -----QQRIQHRVVALLRQFQQKIQHKVYIEIPDWFSYQSSGSSIA-IQLPPHCCNKNFIGFALCVVIQLEEGFDADADE  180 (324)
Q Consensus       107 -----~~~~~q~~~~~~~~~~~g~~~~~~~~IP~Wf~~qs~gssit-i~Lp~~w~~~~~~Gfa~C~v~~~~~~~~~~~~~  180 (324)
                           +....|..  .....+||      .+||+||.||+.|++++ |.||+.|+...|.||++|+|+++....+. ...
T Consensus       942 ~L~~~a~l~~~~~--~~~~~l~g------~evp~~f~hr~~g~sl~~i~l~~~~~~~~~~~f~~c~v~~~~~~~~~-~~~ 1012 (1153)
T PLN03210        942 NLDQEALLQQQSI--FKQLILSG------EEVPSYFTHRTTGASLTNIPLLHISPCQPFFRFRACAVVDSESFFII-SVS 1012 (1153)
T ss_pred             CCCchhhhccccc--ceEEECCC------ccCchhccCCcccceeeeeccCCcccCCCccceEEEEEEecCccccC-CCc
Confidence                 00000000  01234566      99999999999999998 99999999888999999999988765442 235


Q ss_pred             ceeEEEEEEeeCCCCeeeeccccCccccCCcccCCeEEEEEEcCCCCCCCC--CCCccceeEEEEEEeecCCCCCCCceE
Q 020571          181 CFVKCNYNFEIKTPSETKHADDYCFLFADEFIESDHVLLGFSPCWNVGLPD--PDVGHHTTVSFQFSLYYPYLASPRLHK  258 (324)
Q Consensus       181 ~~i~C~~~~~~~~g~~~~~~~~~~~~~~~~~~~sDHl~l~y~~~~~~~~~~--~~~~~~~evsFef~~~~~~~~~~~~~~  258 (324)
                      +.+.|.|+|+++.|+.++.....+.|  ......+|+++|.... ......  ..+.++.+|+++|.+...    ...++
T Consensus      1013 ~~~~~~c~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~f~~~~~----~~~~~ 1085 (1153)
T PLN03210       1013 FDIQVCCRFIDRLGNHFDSPYQPHVF--SVTKKGSHLVIFDCCF-PLNEDNAPLAELNYDHVDIQFRLTNK----NSQLK 1085 (1153)
T ss_pred             eeEEEEEEEECCCCCccccCCCceeE--eeeccccceEEecccc-cccccccchhccCCceeeEEEEEecC----CCCeE
Confidence            78899999998877654321111111  1233466776665332 111111  123457788888877642    23479


Q ss_pred             EEeeccEEEeeCCCCC
Q 020571          259 LKCCGVCPAVLNPSKT  274 (324)
Q Consensus       259 VK~CGV~lIy~~~~~~  274 (324)
                      ||+|||+++|..++..
T Consensus      1086 ~~~cg~~~~~~~~~~~ 1101 (1153)
T PLN03210       1086 LKGCGIRLSEDDSSLN 1101 (1153)
T ss_pred             EEeeeEEEeccCCCcc
Confidence            9999999999666543

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=98.13  E-value=3.8e-06  Score=92.56  Aligned_cols=94  Identities=23%  Similarity=0.370  Sum_probs=61.5

Q ss_pred             CeecCCCCCccchhhcCCCCCCEEEccCCC-c-cCCcccccCCc---cccccccccCcCCCC---CCCCcEEecCCCCCC
Q 020571            1 MNLVENKLESLPASIGCLSSLEFLHLTRNN-L-SLPELPVLLSH---IEARNCKQLQSLPEL---PSCPEELDTSILESL   72 (324)
Q Consensus         1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~-~-~lP~~i~~L~~---L~l~~C~~L~~lP~l---p~sL~~L~~~~C~sL   72 (324)
                      |+|+++.|..+|..+..+++|+.|+|++|+ + .+|. +..+++   |+|++|..|..+|..   ..+|+.|++.+|..|
T Consensus       616 L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L  694 (1153)
T PLN03210        616 LQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENL  694 (1153)
T ss_pred             EECcCccccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCc
Confidence            355666666777777777777777777654 4 6664 555544   777777777777643   256677777777777


Q ss_pred             CccCCCCCcccccceeccCCccc
Q 020571           73 SKHFRPTASRKLTYFMFTNCLKL   95 (324)
Q Consensus        73 ~~~~~~~~~~~~~~l~~~nC~~L   95 (324)
                      +.+|.......+..|.+.+|.+|
T Consensus       695 ~~Lp~~i~l~sL~~L~Lsgc~~L  717 (1153)
T PLN03210        695 EILPTGINLKSLYRLNLSGCSRL  717 (1153)
T ss_pred             CccCCcCCCCCCCEEeCCCCCCc
Confidence            77776554455566777777654

syringae 6; Provisional

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=97.52  E-value=0.0001  Score=77.58  Aligned_cols=66  Identities=38%  Similarity=0.502  Sum_probs=41.7

Q ss_pred             CeecCCCCCccchhhcCCCCCCEEEccCCCc-cCCcccccCCccccccccccCcCCCCCCCCcEEecCCC
Q 020571            1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSHIEARNCKQLQSLPELPSCPEELDTSIL   69 (324)
Q Consensus         1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~L~l~~C~~L~~lP~lp~sL~~L~~~~C   69 (324)
                      +||++++|+.||..+.  ++|+.|+|.+|++ .||....+|..|+|++ ++|.++|.+|++|+.|++.++
T Consensus       206 LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~lp~~Lk~LdLs~-N~LtsLP~lp~sL~~L~Ls~N  272 (788)
T PRK15387        206 LNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPALPPELRTLEVSG-NQLTSLPVLPPGLLELSIFSN  272 (788)
T ss_pred             EEcCCCCCCcCCcchh--cCCCEEEccCCcCCCCCCCCCCCcEEEecC-CccCcccCcccccceeeccCC
Confidence            4677777878887665  3566777776666 6666555554466655 356666666666666655554

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.49  E-value=6.9e-05  Score=49.98  Aligned_cols=35  Identities=29%  Similarity=0.586  Sum_probs=29.0

Q ss_pred             CeecCCCCCccchhhcCCCCCCEEEccCCCc-cCCc
Q 020571            1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPE   35 (324)
Q Consensus         1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~   35 (324)
                      ++|++|+|+++|..++.|++|+.|+|++|.+ .+|.
T Consensus         6 L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~   41 (44)
T PF12799_consen    6 LDLSNNQITDLPPELSNLPNLETLNLSNNPISDISP   41 (44)
T ss_dssp             EEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred             EEccCCCCcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence            4788889999988899999999999999988 7764

...

>PLN03150 hypothetical protein; Provisional

Probab=97.49  E-value=0.00014  Score=75.37  Aligned_cols=79  Identities=16%  Similarity=0.168  Sum_probs=64.8

Q ss_pred             CeecCCCCC-ccchhhcCCCCCCEEEccCCCc--cCCcccccCCc---cccccccccCcCCCC---CCCCcEEecCCCCC
Q 020571            1 MNLVENKLE-SLPASIGCLSSLEFLHLTRNNL--SLPELPVLLSH---IEARNCKQLQSLPEL---PSCPEELDTSILES   71 (324)
Q Consensus         1 ~~L~~~~l~-~lP~~i~~l~~L~~L~L~~n~~--~lP~~i~~L~~---L~l~~C~~L~~lP~l---p~sL~~L~~~~C~s   71 (324)
                      |+|++|.|. .+|.+|+.+++|+.|+|++|++  .+|..++.|++   |+|+++.....+|+.   .++|+.|+++++.-
T Consensus       423 L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l  502 (623)
T PLN03150        423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSL  502 (623)
T ss_pred             EECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcc
Confidence            467888886 7999999999999999999999  89998988887   999988776788863   36889999998765


Q ss_pred             CCccCCCC
Q 020571           72 LSKHFRPT   79 (324)
Q Consensus        72 L~~~~~~~   79 (324)
                      ...+|..+
T Consensus       503 ~g~iP~~l  510 (623)
T PLN03150        503 SGRVPAAL  510 (623)
T ss_pred             cccCChHH
Confidence            55666543

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=97.48  E-value=0.00013  Score=76.76  Aligned_cols=85  Identities=29%  Similarity=0.272  Sum_probs=68.2

Q ss_pred             CeecCCCCCccchhhcCCCCCCEEEccCCCc-cCCcccccCCccccccccccCcCCCCCCCCcEEecCCCCCCCccCCCC
Q 020571            1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSHIEARNCKQLQSLPELPSCPEELDTSILESLSKHFRPT   79 (324)
Q Consensus         1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~L~l~~C~~L~~lP~lp~sL~~L~~~~C~sL~~~~~~~   79 (324)
                      |+|++|+|+.||..   +++|++|+|++|++ .||..+.+|..|+|+++ .+..+|.+|.+|+.|++.++ .|+.+|...
T Consensus       227 L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~lp~sL~~L~Ls~N-~L~~Lp~lp~~L~~L~Ls~N-~Lt~LP~~p  301 (788)
T PRK15387        227 LVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVLPPGLLELSIFSN-PLTHLPALPSGLCKLWIFGN-QLTSLPVLP  301 (788)
T ss_pred             EEccCCcCCCCCCC---CCCCcEEEecCCccCcccCcccccceeeccCC-chhhhhhchhhcCEEECcCC-ccccccccc
Confidence            46788999999963   58899999999999 99987777777889885 58899999999999999986 677777532


Q ss_pred             CcccccceeccCC
Q 020571           80 ASRKLTYFMFTNC   92 (324)
Q Consensus        80 ~~~~~~~l~~~nC   92 (324)
                        ..+..|+++++
T Consensus       302 --~~L~~LdLS~N  312 (788)
T PRK15387        302 --PGLQELSVSDN  312 (788)
T ss_pred             --cccceeECCCC
Confidence              34566777664

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=97.42  E-value=0.00016  Score=78.28  Aligned_cols=70  Identities=23%  Similarity=0.323  Sum_probs=44.5

Q ss_pred             CeecCCCCC-ccchhhcCCCCCCEEEccCCCc--cCCcccccCCc---cccccccccCcCCCC---CCCCcEEecCCCC
Q 020571            1 MNLVENKLE-SLPASIGCLSSLEFLHLTRNNL--SLPELPVLLSH---IEARNCKQLQSLPEL---PSCPEELDTSILE   70 (324)
Q Consensus         1 ~~L~~~~l~-~lP~~i~~l~~L~~L~L~~n~~--~lP~~i~~L~~---L~l~~C~~L~~lP~l---p~sL~~L~~~~C~   70 (324)
                      |+|++|.+. .+|..++.+++|++|+|++|.+  .+|.++.++++   |+|++|.....+|..   ..+|+.|++.+|.
T Consensus       145 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~  223 (968)
T PLN00113        145 LDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNN  223 (968)
T ss_pred             EECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCc
Confidence            356666654 5677777777777777777776  67777776665   777766655555532   2455555555543

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=97.41  E-value=0.00025  Score=74.72  Aligned_cols=87  Identities=26%  Similarity=0.355  Sum_probs=52.1

Q ss_pred             CeecCCCCCccchhhcCCCCCCEEEccCCCc-cCCccccc-CCccccccccccCcCCC-CCCCCcEEecCCCCCCCccCC
Q 020571            1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVL-LSHIEARNCKQLQSLPE-LPSCPEELDTSILESLSKHFR   77 (324)
Q Consensus         1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~~-L~~L~l~~C~~L~~lP~-lp~sL~~L~~~~C~sL~~~~~   77 (324)
                      |+|++|+|+.+|..+.  .+|+.|+|++|++ .||.++.. |..|+|++| .+..||. +|.+|+.|++++ ..|..+|.
T Consensus       204 L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~~~L~~L~Ls~N-~L~~LP~~l~s~L~~L~Ls~-N~L~~LP~  279 (754)
T PRK15370        204 LILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLPDTIQEMELSIN-RITELPERLPSALQSLDLFH-NKISCLPE  279 (754)
T ss_pred             EEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhhccccEEECcCC-ccCcCChhHhCCCCEEECcC-CccCcccc
Confidence            3566666666666554  4677777777777 77765432 222677664 3556663 556777777764 46666665


Q ss_pred             CCCcccccceeccCC
Q 020571           78 PTASRKLTYFMFTNC   92 (324)
Q Consensus        78 ~~~~~~~~~l~~~nC   92 (324)
                      .+. ..+..|++++|
T Consensus       280 ~l~-~sL~~L~Ls~N  293 (754)
T PRK15370        280 NLP-EELRYLSVYDN  293 (754)
T ss_pred             ccC-CCCcEEECCCC
Confidence            432 23556666654

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.36  E-value=0.00026  Score=69.22  Aligned_cols=36  Identities=31%  Similarity=0.403  Sum_probs=21.0

Q ss_pred             eecCC-CCCccchhhcCCCCCCEEEccCC-Cc-cCCccccc
Q 020571            2 NLVEN-KLESLPASIGCLSSLEFLHLTRN-NL-SLPELPVL   39 (324)
Q Consensus         2 ~L~~~-~l~~lP~~i~~l~~L~~L~L~~n-~~-~lP~~i~~   39 (324)
                      ++++| +|+.+|..+.  ++|+.|++++| ++ .||+++..
T Consensus        78 ~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~sLe~  116 (426)
T PRK15386         78 TIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPESVRS  116 (426)
T ss_pred             EccCCCCcccCCchhh--hhhhheEccCcccccccccccce
Confidence            45555 5666665542  46777777766 44 56655443

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.33  E-value=7.9e-05  Score=79.65  Aligned_cols=68  Identities=28%  Similarity=0.405  Sum_probs=60.6

Q ss_pred             CeecCC-CCCccchhhcCCCCCCEEEccCCCc-cCCcccccCCc---cccccccccCcCCCCC---CCCcEEecCC
Q 020571            1 MNLVEN-KLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSH---IEARNCKQLQSLPELP---SCPEELDTSI   68 (324)
Q Consensus         1 ~~L~~~-~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~---L~l~~C~~L~~lP~lp---~sL~~L~~~~   68 (324)
                      |||++| .+.++|++|+.|-+|++|+|++..+ .||.+|++|.+   |++.....+.++|...   .+|++|.+..
T Consensus       576 LDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~  651 (889)
T KOG4658|consen  576 LDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPR  651 (889)
T ss_pred             EECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeec
Confidence            589988 8899999999999999999999999 99999999998   9999989999988764   6778877654

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=97.32  E-value=0.00021  Score=77.24  Aligned_cols=75  Identities=19%  Similarity=0.214  Sum_probs=37.1

Q ss_pred             eecCCCCC-ccchhhcCCCCCCEEEccCCCc--cCCcccccCCc---cccccccccCcCCCC---CCCCcEEecCCCCCC
Q 020571            2 NLVENKLE-SLPASIGCLSSLEFLHLTRNNL--SLPELPVLLSH---IEARNCKQLQSLPEL---PSCPEELDTSILESL   72 (324)
Q Consensus         2 ~L~~~~l~-~lP~~i~~l~~L~~L~L~~n~~--~lP~~i~~L~~---L~l~~C~~L~~lP~l---p~sL~~L~~~~C~sL   72 (324)
                      +|++|.+. .+|..++.+++|+.|+|++|.+  .+|..+..+++   |+|++|+....+|..   ..+|+.|++++|.-.
T Consensus       505 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~  584 (968)
T PLN00113        505 KLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLH  584 (968)
T ss_pred             ECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcce
Confidence            34444443 3455555555555555555555  44544444444   555555544455532   234555555555544


Q ss_pred             CccC
Q 020571           73 SKHF   76 (324)
Q Consensus        73 ~~~~   76 (324)
                      ..+|
T Consensus       585 ~~~p  588 (968)
T PLN00113        585 GSLP  588 (968)
T ss_pred             eeCC
Confidence            4444

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=97.27  E-value=0.0001  Score=52.30  Aligned_cols=48  Identities=38%  Similarity=0.555  Sum_probs=34.7

Q ss_pred             CeecCCCCCccch-hhcCCCCCCEEEccCCCc-cCCc-ccccCCc---cccccc
Q 020571            1 MNLVENKLESLPA-SIGCLSSLEFLHLTRNNL-SLPE-LPVLLSH---IEARNC   48 (324)
Q Consensus         1 ~~L~~~~l~~lP~-~i~~l~~L~~L~L~~n~~-~lP~-~i~~L~~---L~l~~C   48 (324)
                      ++|++|+|..+|. .+..+++|++|+|++|++ .+|+ .+..+++   |++++|
T Consensus         6 L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    6 LDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             EEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred             EECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence            4678888888885 557788888888888888 7765 4566555   666554

...

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=97.26  E-value=0.00029  Score=74.26  Aligned_cols=74  Identities=24%  Similarity=0.316  Sum_probs=58.9

Q ss_pred             CeecCCCCCccchhhcCCCCCCEEEccCCCc-cCCccccc-CCccccccccccCcCCC-CCCCCcEEecCCCCCCCccCC
Q 020571            1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVL-LSHIEARNCKQLQSLPE-LPSCPEELDTSILESLSKHFR   77 (324)
Q Consensus         1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~~-L~~L~l~~C~~L~~lP~-lp~sL~~L~~~~C~sL~~~~~   77 (324)
                      |+|++|+|+.+|..+.  .+|+.|+|++|++ .||..+.. |..|+|+ |++|..+|. +|.+|+.|++++| .|+.+|.
T Consensus       225 L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~l~s~L~~L~Ls-~N~L~~LP~~l~~sL~~L~Ls~N-~Lt~LP~  300 (754)
T PRK15370        225 LYANSNQLTSIPATLP--DTIQEMELSINRITELPERLPSALQSLDLF-HNKISCLPENLPEELRYLSVYDN-SIRTLPA  300 (754)
T ss_pred             EECCCCccccCChhhh--ccccEEECcCCccCcCChhHhCCCCEEECc-CCccCccccccCCCCcEEECCCC-ccccCcc
Confidence            5788899999998764  5799999999999 99987653 3338887 568888886 7789999999986 6777764


Q ss_pred             C
Q 020571           78 P   78 (324)
Q Consensus        78 ~   78 (324)
                      .
T Consensus       301 ~  301 (754)
T PRK15370        301 H  301 (754)
T ss_pred             c
Confidence            3

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.15  E-value=0.00042  Score=67.76  Aligned_cols=66  Identities=27%  Similarity=0.365  Sum_probs=51.4

Q ss_pred             hcCCCCCCEEEccCCCc-cCCcccccCCccccccccccCcCCC-CCCCCcEEecCCCCCCCccCCCCC
Q 020571           15 IGCLSSLEFLHLTRNNL-SLPELPVLLSHIEARNCKQLQSLPE-LPSCPEELDTSILESLSKHFRPTA   80 (324)
Q Consensus        15 i~~l~~L~~L~L~~n~~-~lP~~i~~L~~L~l~~C~~L~~lP~-lp~sL~~L~~~~C~sL~~~~~~~~   80 (324)
                      |..+..|+.|++++|++ .||.--.+|..|.+++|.+|.++|+ +|.+|+.|++.+|..|..+|..+.
T Consensus        48 ~~~~~~l~~L~Is~c~L~sLP~LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L~sLP~sLe  115 (426)
T PRK15386         48 IEEARASGRLYIKDCDIESLPVLPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEISGLPESVR  115 (426)
T ss_pred             HHHhcCCCEEEeCCCCCcccCCCCCCCcEEEccCCCCcccCCchhhhhhhheEccCcccccccccccc
Confidence            44578899999999988 8884223344488899999999995 788999999999988888876543

>PLN03150 hypothetical protein; Provisional

Probab=97.01  E-value=0.00089  Score=69.38  Aligned_cols=75  Identities=24%  Similarity=0.341  Sum_probs=60.0

Q ss_pred             CeecCCCCC-ccchhhcCCCCCCEEEccCCCc--cCCcccccCCc---cccccccccCcCCCC----CCCCcEEecCCCC
Q 020571            1 MNLVENKLE-SLPASIGCLSSLEFLHLTRNNL--SLPELPVLLSH---IEARNCKQLQSLPEL----PSCPEELDTSILE   70 (324)
Q Consensus         1 ~~L~~~~l~-~lP~~i~~l~~L~~L~L~~n~~--~lP~~i~~L~~---L~l~~C~~L~~lP~l----p~sL~~L~~~~C~   70 (324)
                      |+|++|+|. .+|..++.+++|+.|+|++|++  .+|..+++|++   |+|+++.....+|..    +.++..+++.++.
T Consensus       447 L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        447 INLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             EECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCc
Confidence            578999887 8999999999999999999999  89999998887   999998777788853    2344566666655


Q ss_pred             CCCcc
Q 020571           71 SLSKH   75 (324)
Q Consensus        71 sL~~~   75 (324)
                      .|-..
T Consensus       527 ~lc~~  531 (623)
T PLN03150        527 GLCGI  531 (623)
T ss_pred             cccCC
Confidence            44433

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=96.93  E-value=0.00021  Score=74.96  Aligned_cols=42  Identities=40%  Similarity=0.574  Sum_probs=26.5

Q ss_pred             CeecCCCCCccchh-hcCCCCCCEEEccCCCc-cCCcccccCCc
Q 020571            1 MNLVENKLESLPAS-IGCLSSLEFLHLTRNNL-SLPELPVLLSH   42 (324)
Q Consensus         1 ~~L~~~~l~~lP~~-i~~l~~L~~L~L~~n~~-~lP~~i~~L~~   42 (324)
                      |+|++|.|..+|++ +.+|..|+.|+||||.+ .||.++-.+..
T Consensus       388 LhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~  431 (1081)
T KOG0618|consen  388 LHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGR  431 (1081)
T ss_pred             eeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhh
Confidence            45666666666653 34566666777777776 66666655544

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=96.75  E-value=0.00053  Score=66.21  Aligned_cols=88  Identities=24%  Similarity=0.254  Sum_probs=54.8

Q ss_pred             CeecCCCCCccchhhcCCCCCCEEEccCCCc-cCCcccccCCc--cccccccccCcCCCC----CCCCcEEecCCCCCCC
Q 020571            1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSH--IEARNCKQLQSLPEL----PSCPEELDTSILESLS   73 (324)
Q Consensus         1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~--L~l~~C~~L~~lP~l----p~sL~~L~~~~C~sL~   73 (324)
                      |+|++|-|..+|.+++.+..|+.|+++.|.| .+|..+..+..  +.+..-..+++++.-    ..+|..||+.+ ..|+
T Consensus       440 L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~n-Ndlq  518 (565)
T KOG0472|consen  440 LDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQN-NDLQ  518 (565)
T ss_pred             eecccchhhhcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCC-Cchh
Confidence            3566666667777777777777777777777 77766655554  334444556666542    36778888887 6788


Q ss_pred             ccCCCCCc-ccccceec
Q 020571           74 KHFRPTAS-RKLTYFMF   89 (324)
Q Consensus        74 ~~~~~~~~-~~~~~l~~   89 (324)
                      .+|...+. -++++|.+
T Consensus       519 ~IPp~LgnmtnL~hLeL  535 (565)
T KOG0472|consen  519 QIPPILGNMTNLRHLEL  535 (565)
T ss_pred             hCChhhccccceeEEEe
Confidence            88865443 23334444

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=96.74  E-value=0.00061  Score=45.38  Aligned_cols=38  Identities=26%  Similarity=0.392  Sum_probs=28.9

Q ss_pred             CCCCEEEccCCCc-cCCcccccCCc---cccccccccCcCCCC
Q 020571           19 SSLEFLHLTRNNL-SLPELPVLLSH---IEARNCKQLQSLPEL   57 (324)
Q Consensus        19 ~~L~~L~L~~n~~-~lP~~i~~L~~---L~l~~C~~L~~lP~l   57 (324)
                      ++|++|+|++|++ .||..|++|++   |+++++ .+.+++.+
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~~l   42 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDISPL   42 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBEGGG
T ss_pred             CcceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCCcCC
Confidence            4799999999999 99998988887   888875 46565544

...

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=96.68  E-value=0.00035  Score=73.34  Aligned_cols=69  Identities=33%  Similarity=0.501  Sum_probs=60.4

Q ss_pred             CeecCCCCCccchhhcCCCCCCEEEccCCCc-cCCcccccCCc---cccccccccCcC--C-CCC-CCCcEEecCCCCC
Q 020571            1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSH---IEARNCKQLQSL--P-ELP-SCPEELDTSILES   71 (324)
Q Consensus         1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~---L~l~~C~~L~~l--P-~lp-~sL~~L~~~~C~s   71 (324)
                      |+||+|.|+.||+.+..|.+|++|...+|.+ .+| .+.++..   +||+ |++|+.+  | .+| ++|++||+.|.+.
T Consensus       412 L~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS-~N~L~~~~l~~~~p~p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  412 LNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLS-CNNLSEVTLPEALPSPNLKYLDLSGNTR  488 (1081)
T ss_pred             HhcccchhhhhhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecc-cchhhhhhhhhhCCCcccceeeccCCcc
Confidence            5899999999999999999999999999999 999 5877776   8997 7888754  4 467 8999999999764

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=96.67  E-value=0.0014  Score=56.94  Aligned_cols=71  Identities=28%  Similarity=0.380  Sum_probs=22.6

Q ss_pred             CeecCCCCCccchhhc-CCCCCCEEEccCCCc-cCCcccccCCc---cccccccccCcCCC-C---CCCCcEEecCCCCC
Q 020571            1 MNLVENKLESLPASIG-CLSSLEFLHLTRNNL-SLPELPVLLSH---IEARNCKQLQSLPE-L---PSCPEELDTSILES   71 (324)
Q Consensus         1 ~~L~~~~l~~lP~~i~-~l~~L~~L~L~~n~~-~lP~~i~~L~~---L~l~~C~~L~~lP~-l---p~sL~~L~~~~C~s   71 (324)
                      |+|.++.|..|. .++ .+.+|+.|+|++|.+ .|+ ++..|.+   |++++ +++.++.+ +   .++|+.|++.+. .
T Consensus        24 L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~-N~I~~i~~~l~~~lp~L~~L~L~~N-~   99 (175)
T PF14580_consen   24 LNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSN-NRISSISEGLDKNLPNLQELYLSNN-K   99 (175)
T ss_dssp             -------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--S-S---S-CHHHHHH-TT--EEE-TTS--
T ss_pred             cccccccccccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCC-CCCCccccchHHhCCcCCEEECcCC-c
Confidence            578888888775 576 588999999999998 886 3666665   88886 77777753 2   368999988863 4


Q ss_pred             CCcc
Q 020571           72 LSKH   75 (324)
Q Consensus        72 L~~~   75 (324)
                      +..+
T Consensus       100 I~~l  103 (175)
T PF14580_consen  100 ISDL  103 (175)
T ss_dssp             --SC
T ss_pred             CCCh
Confidence            4433

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=96.65  E-value=0.00045  Score=70.00  Aligned_cols=75  Identities=21%  Similarity=0.265  Sum_probs=53.0

Q ss_pred             ecCCCCC--ccchhhcCCCCCCEEEccCCCc-cCCcccccCCc---cccccccccCcCCCCC----CCCcEEecCCCCCC
Q 020571            3 LVENKLE--SLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSH---IEARNCKQLQSLPELP----SCPEELDTSILESL   72 (324)
Q Consensus         3 L~~~~l~--~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~---L~l~~C~~L~~lP~lp----~sL~~L~~~~C~sL   72 (324)
                      +..|+|+  .||.+|..|.-|.+|+||.|.+ +.|..+.+..+   |+|++ +++.+||.-.    .-|-+|++++ ..|
T Consensus        85 ~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~-N~IetIPn~lfinLtDLLfLDLS~-NrL  162 (1255)
T KOG0444|consen   85 VRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSY-NNIETIPNSLFINLTDLLFLDLSN-NRL  162 (1255)
T ss_pred             hhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEccc-CccccCCchHHHhhHhHhhhcccc-chh
Confidence            3456664  6888888888888888888888 88887777666   77776 6777777521    3455677776 467


Q ss_pred             CccCCCC
Q 020571           73 SKHFRPT   79 (324)
Q Consensus        73 ~~~~~~~   79 (324)
                      +++|...
T Consensus       163 e~LPPQ~  169 (1255)
T KOG0444|consen  163 EMLPPQI  169 (1255)
T ss_pred             hhcCHHH
Confidence            7777544

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=96.59  E-value=0.0007  Score=58.61  Aligned_cols=66  Identities=32%  Similarity=0.431  Sum_probs=45.9

Q ss_pred             eecCCCCCccchhhcCCCCCCEEEccCCCc-cCCcccccCCc---cccccccccCcCCCC---CCCCcEEecCC
Q 020571            2 NLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSH---IEARNCKQLQSLPEL---PSCPEELDTSI   68 (324)
Q Consensus         2 ~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~---L~l~~C~~L~~lP~l---p~sL~~L~~~~   68 (324)
                      -||.|+|+.+|+.|..|.+|+.|++++|.+ .+|.+|+.|.+   |++. -++|.-+|.=   -+-|+.||+..
T Consensus        39 tLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvg-mnrl~~lprgfgs~p~levldlty  111 (264)
T KOG0617|consen   39 TLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVG-MNRLNILPRGFGSFPALEVLDLTY  111 (264)
T ss_pred             hcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecc-hhhhhcCccccCCCchhhhhhccc
Confidence            367777888888888888888888888888 88888888877   6664 4566666632   23445555543

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=96.34  E-value=0.00085  Score=58.10  Aligned_cols=47  Identities=32%  Similarity=0.458  Sum_probs=28.1

Q ss_pred             CeecCCCCCccchhhcCCCCCCEEEccCCCc-cCCcccccCCc---ccccc
Q 020571            1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSH---IEARN   47 (324)
Q Consensus         1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~---L~l~~   47 (324)
                      ||+++|.|+++|.+|+.++.|+.|+++-|.+ .+|.+++.++.   |+|.+
T Consensus        61 ln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldlty  111 (264)
T KOG0617|consen   61 LNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTY  111 (264)
T ss_pred             hhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccc
Confidence            3455556666666666666666666666666 66666666554   55544

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=96.23  E-value=0.0016  Score=66.21  Aligned_cols=79  Identities=27%  Similarity=0.304  Sum_probs=53.8

Q ss_pred             CeecCCCCCccchhhcCCCCCCEEEccCCC--c-cCCcccccCC-----------------------c---ccccccccc
Q 020571            1 MNLVENKLESLPASIGCLSSLEFLHLTRNN--L-SLPELPVLLS-----------------------H---IEARNCKQL   51 (324)
Q Consensus         1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~--~-~lP~~i~~L~-----------------------~---L~l~~C~~L   51 (324)
                      ||||.|.|+.+|+.++.|+.|+.|.+.+|.  | .||++|+.|.                       +   |.|+ |++|
T Consensus       273 LNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~-~NrL  351 (1255)
T KOG0444|consen  273 LNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLD-HNRL  351 (1255)
T ss_pred             hccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhccc-ccce
Confidence            456666666666666666666666666663  3 6666665553                       3   5564 6788


Q ss_pred             CcCCC---CCCCCcEEecCCCCCCCccCCCCC
Q 020571           52 QSLPE---LPSCPEELDTSILESLSKHFRPTA   80 (324)
Q Consensus        52 ~~lP~---lp~sL~~L~~~~C~sL~~~~~~~~   80 (324)
                      ..||+   +.+.|+.|++.+...|..=|.+..
T Consensus       352 iTLPeaIHlL~~l~vLDlreNpnLVMPPKP~d  383 (1255)
T KOG0444|consen  352 ITLPEAIHLLPDLKVLDLRENPNLVMPPKPND  383 (1255)
T ss_pred             eechhhhhhcCCcceeeccCCcCccCCCCcch
Confidence            88886   558899999999998887776644

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=96.17  E-value=0.00038  Score=67.17  Aligned_cols=56  Identities=32%  Similarity=0.449  Sum_probs=35.7

Q ss_pred             eecCCCCCccchhhcCCCCCCEEEccCCCc-cCCcccccCCc---cccccccccCcCCCCC
Q 020571            2 NLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSH---IEARNCKQLQSLPELP   58 (324)
Q Consensus         2 ~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~---L~l~~C~~L~~lP~lp   58 (324)
                      ++.++.++++|+..-.|++|+.||.-.|-+ .||+.++.+.+   |+|.. +++..+|++|
T Consensus       166 ~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~-Nki~~lPef~  225 (565)
T KOG0472|consen  166 DLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRR-NKIRFLPEFP  225 (565)
T ss_pred             hccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhh-cccccCCCCC
Confidence            445555566665555566666666666666 77777777766   66665 5666677655

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.12  E-value=0.0016  Score=36.71  Aligned_cols=21  Identities=48%  Similarity=0.651  Sum_probs=17.6

Q ss_pred             CCCEEEccCCCc-cCCcccccC
Q 020571           20 SLEFLHLTRNNL-SLPELPVLL   40 (324)
Q Consensus        20 ~L~~L~L~~n~~-~lP~~i~~L   40 (324)
                      +|++|+|++|++ .||++|++|
T Consensus         1 ~L~~Ldls~n~l~~ip~~~~~l   22 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSSFSNL   22 (22)
T ss_dssp             TESEEEETSSEESEEGTTTTT-
T ss_pred             CccEEECCCCcCEeCChhhcCC
Confidence            589999999999 999887764

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=95.91  E-value=0.0047  Score=43.58  Aligned_cols=50  Identities=30%  Similarity=0.319  Sum_probs=36.2

Q ss_pred             CCCCEEEccCCCc-cCCc-ccccCCc---cccccccccCcCCCC----CCCCcEEecCCC
Q 020571           19 SSLEFLHLTRNNL-SLPE-LPVLLSH---IEARNCKQLQSLPEL----PSCPEELDTSIL   69 (324)
Q Consensus        19 ~~L~~L~L~~n~~-~lP~-~i~~L~~---L~l~~C~~L~~lP~l----p~sL~~L~~~~C   69 (324)
                      ++|+.|+|++|++ .||. .+..+++   |++++ .+++.+|.-    .++|+.|++++|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~-N~l~~i~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSN-NNLTSIPPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETS-SSESEEETTTTTTSTTESEEEETSS
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccC-CccCccCHHHHcCCCCCCEEeCcCC
Confidence            5789999999999 9995 5676766   88884 556666632    256677777665

...

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=95.50  E-value=0.0056  Score=59.37  Aligned_cols=75  Identities=29%  Similarity=0.367  Sum_probs=46.2

Q ss_pred             eecCCCCCccchhhcCCC-CCCEEEccCCCc-cCCcccccCCc---cccccccccCcCCC---CCCCCcEEecCCCCCCC
Q 020571            2 NLVENKLESLPASIGCLS-SLEFLHLTRNNL-SLPELPVLLSH---IEARNCKQLQSLPE---LPSCPEELDTSILESLS   73 (324)
Q Consensus         2 ~L~~~~l~~lP~~i~~l~-~L~~L~L~~n~~-~lP~~i~~L~~---L~l~~C~~L~~lP~---lp~sL~~L~~~~C~sL~   73 (324)
                      ++.++++.++|..++.+. +|+.|++++|.+ .+|..+..++.   |++++ ..+..+|.   .+.+|+.|++++ ..+.
T Consensus       122 ~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~-N~l~~l~~~~~~~~~L~~L~ls~-N~i~  199 (394)
T COG4886         122 DLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSF-NDLSDLPKLLSNLSNLNNLDLSG-NKIS  199 (394)
T ss_pred             ecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCC-chhhhhhhhhhhhhhhhheeccC-Cccc
Confidence            455566667776666664 777777777777 77655666655   66665 44555554   456666666666 3455


Q ss_pred             ccCCC
Q 020571           74 KHFRP   78 (324)
Q Consensus        74 ~~~~~   78 (324)
                      .+|..
T Consensus       200 ~l~~~  204 (394)
T COG4886         200 DLPPE  204 (394)
T ss_pred             cCchh
Confidence            55543

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=95.36  E-value=0.0042  Score=58.14  Aligned_cols=73  Identities=14%  Similarity=0.176  Sum_probs=40.5

Q ss_pred             CeecCCCCCccchhhcCCCCCCEEEccCCCc-cCCcccccCCc---cccccccccCcCCCCC---CCCcEEecCCCCCCC
Q 020571            1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSH---IEARNCKQLQSLPELP---SCPEELDTSILESLS   73 (324)
Q Consensus         1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~---L~l~~C~~L~~lP~lp---~sL~~L~~~~C~sL~   73 (324)
                      +|||+|.|+.+-+++.-++.++.|++|.|.+ .+-+ +..|++   |+|++ +.|.++-.+-   .+++.|.+.+ ..++
T Consensus       289 lDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~-N~Ls~~~Gwh~KLGNIKtL~La~-N~iE  365 (490)
T KOG1259|consen  289 LDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSG-NLLAECVGWHLKLGNIKTLKLAQ-NKIE  365 (490)
T ss_pred             ccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeeccc-chhHhhhhhHhhhcCEeeeehhh-hhHh
Confidence            4566666666666666666666666666666 5443 444444   66665 4444444332   4555555554 3444


Q ss_pred             ccC
Q 020571           74 KHF   76 (324)
Q Consensus        74 ~~~   76 (324)
                      +++
T Consensus       366 ~LS  368 (490)
T KOG1259|consen  366 TLS  368 (490)
T ss_pred             hhh
Confidence            444

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=95.17  E-value=0.0039  Score=62.72  Aligned_cols=71  Identities=32%  Similarity=0.412  Sum_probs=41.7

Q ss_pred             cCCCCCccchhhcCCCCCCEEEccCCCc-cCCcccccCCc--cccccccccCcCCC---CCCCCcEEecCCCCCCCccC
Q 020571            4 VENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSH--IEARNCKQLQSLPE---LPSCPEELDTSILESLSKHF   76 (324)
Q Consensus         4 ~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~--L~l~~C~~L~~lP~---lp~sL~~L~~~~C~sL~~~~   76 (324)
                      ..|.+..+|..|++|..|++|+|+.|.+ .+|..|..|.-  |-+++ ++|.++|+   +...|..|+++.| .+.++|
T Consensus       106 y~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lpLkvli~sN-Nkl~~lp~~ig~~~tl~~ld~s~n-ei~slp  182 (722)
T KOG0532|consen  106 YHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLPLKVLIVSN-NKLTSLPEEIGLLPTLAHLDVSKN-EIQSLP  182 (722)
T ss_pred             HhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCcceeEEEec-CccccCCcccccchhHHHhhhhhh-hhhhch
Confidence            3445556777777777777777777777 77766666665  44443 56666663   2344455555543 344443

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=95.16  E-value=0.016  Score=50.39  Aligned_cols=32  Identities=28%  Similarity=0.490  Sum_probs=7.6

Q ss_pred             eecCCCCCccchhhcCCCCCCEEEccCCCc-cCC
Q 020571            2 NLVENKLESLPASIGCLSSLEFLHLTRNNL-SLP   34 (324)
Q Consensus         2 ~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP   34 (324)
                      ||++|.|+.++ .+..++.|+.|+|++|.+ .++
T Consensus        48 ~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~   80 (175)
T PF14580_consen   48 DLSNNQITKLE-GLPGLPRLKTLDLSNNRISSIS   80 (175)
T ss_dssp             E-TTS--S--T-T----TT--EEE--SS---S-C
T ss_pred             ECCCCCCcccc-CccChhhhhhcccCCCCCCccc
Confidence            44444444443 344445555555555555 444

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=95.06  E-value=0.0096  Score=57.72  Aligned_cols=68  Identities=40%  Similarity=0.571  Sum_probs=43.8

Q ss_pred             CeecCCCCCccchhhcCCCCCCEEEccCCCc-cCCcccccCCc---cccccccccCcCCC---CCCCCcEEecCCC
Q 020571            1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSH---IEARNCKQLQSLPE---LPSCPEELDTSIL   69 (324)
Q Consensus         1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~---L~l~~C~~L~~lP~---lp~sL~~L~~~~C   69 (324)
                      |+++++.+..+|..++.++.|+.|+++.|++ .+|.....+..   |++++ .++..+|.   .+..|+.|.+.+-
T Consensus       145 L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~-N~i~~l~~~~~~~~~L~~l~~~~N  219 (394)
T COG4886         145 LDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSG-NKISDLPPEIELLSALEELDLSNN  219 (394)
T ss_pred             ccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccC-CccccCchhhhhhhhhhhhhhcCC
Confidence            4566667777766677777777777777777 77765434433   66665 56666665   4555666666663

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=94.24  E-value=0.009  Score=60.17  Aligned_cols=53  Identities=38%  Similarity=0.577  Sum_probs=33.0

Q ss_pred             CeecCCCCCccchhhcCCCCCCEEEccCCCc-cCCcccccCCc---cccccccccCcCC
Q 020571            1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSH---IEARNCKQLQSLP   55 (324)
Q Consensus         1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~---L~l~~C~~L~~lP   55 (324)
                      +||+-|.|..+|..++.|+ |+.|.+++|++ .+|..|+.+..   |+.+ |..++++|
T Consensus       126 l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s-~nei~slp  182 (722)
T KOG0532|consen  126 LDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVS-KNEIQSLP  182 (722)
T ss_pred             hhhccchhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhh-hhhhhhch
Confidence            3556666666777776666 67777777777 77776764443   5555 34555555

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=93.55  E-value=0.039  Score=28.98  Aligned_cols=16  Identities=50%  Similarity=0.742  Sum_probs=10.1

Q ss_pred             CCCCEEEccCCCc-cCC
Q 020571           19 SSLEFLHLTRNNL-SLP   34 (324)
Q Consensus        19 ~~L~~L~L~~n~~-~lP   34 (324)
                      ++|+.|+|++|.+ +||
T Consensus         1 ~~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    1 PNLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             TT-SEEEETSS--SSE-
T ss_pred             CccCEEECCCCCCCCCc
Confidence            4788999999988 877

...

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=92.50  E-value=0.073  Score=57.38  Aligned_cols=69  Identities=22%  Similarity=0.224  Sum_probs=50.2

Q ss_pred             CCccchh-hcCCCCCCEEEccCC-Cc-cCCcccccCCc---cccccccccCcCCCCC---CCCcEEecCCCCCCCccCC
Q 020571            8 LESLPAS-IGCLSSLEFLHLTRN-NL-SLPELPVLLSH---IEARNCKQLQSLPELP---SCPEELDTSILESLSKHFR   77 (324)
Q Consensus         8 l~~lP~~-i~~l~~L~~L~L~~n-~~-~lP~~i~~L~~---L~l~~C~~L~~lP~lp---~sL~~L~~~~C~sL~~~~~   77 (324)
                      +..++.. +..++.|.+|||++| .+ .||++|+.|.+   |+|++ ..+..||.-.   ..|.+|++.....|+.++.
T Consensus       559 l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~-t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~  636 (889)
T KOG4658|consen  559 LLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD-TGISHLPSGLGNLKKLIYLNLEVTGRLESIPG  636 (889)
T ss_pred             hhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccC-CCccccchHHHHHHhhheeccccccccccccc
Confidence            3444443 667999999999988 45 99999999988   88886 5566666432   4667888887776666643

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=92.27  E-value=0.03  Score=46.95  Aligned_cols=55  Identities=20%  Similarity=0.376  Sum_probs=32.6

Q ss_pred             eecCCCCCccchhhcCC-CCCCEEEccCCCc-cCCcccccCCc---cccccccccCcCCCC
Q 020571            2 NLVENKLESLPASIGCL-SSLEFLHLTRNNL-SLPELPVLLSH---IEARNCKQLQSLPEL   57 (324)
Q Consensus         2 ~L~~~~l~~lP~~i~~l-~~L~~L~L~~n~~-~lP~~i~~L~~---L~l~~C~~L~~lP~l   57 (324)
                      +|++|.+.++|..+... +-++.|+|.+|.+ .+|..+..++.   |+++. +.+...|+.
T Consensus        59 ~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~-N~l~~~p~v  118 (177)
T KOG4579|consen   59 SLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRF-NPLNAEPRV  118 (177)
T ss_pred             ecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccccc-CccccchHH
Confidence            46666666677666543 3667777777777 77765544443   66654 444445543

>smart00370 LRR Leucine-rich repeats, outliers

Probab=92.12  E-value=0.12  Score=29.92  Aligned_cols=20  Identities=45%  Similarity=0.562  Sum_probs=17.6

Q ss_pred             CCCCCEEEccCCCc-cCCccc
Q 020571           18 LSSLEFLHLTRNNL-SLPELP   37 (324)
Q Consensus        18 l~~L~~L~L~~n~~-~lP~~i   37 (324)
                      |++|+.|+|++|.+ .||..+
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHH
Confidence            57899999999999 999754

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=92.12  E-value=0.12  Score=29.92  Aligned_cols=20  Identities=45%  Similarity=0.562  Sum_probs=17.6

Q ss_pred             CCCCCEEEccCCCc-cCCccc
Q 020571           18 LSSLEFLHLTRNNL-SLPELP   37 (324)
Q Consensus        18 l~~L~~L~L~~n~~-~lP~~i   37 (324)
                      |++|+.|+|++|.+ .||..+
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHH
Confidence            57899999999999 999754

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=91.81  E-value=0.041  Score=55.84  Aligned_cols=35  Identities=26%  Similarity=0.349  Sum_probs=24.4

Q ss_pred             CeecCCCCCcc-chhhcCCCCCCEEEccCCCc-cCCc
Q 020571            1 MNLVENKLESL-PASIGCLSSLEFLHLTRNNL-SLPE   35 (324)
Q Consensus         1 ~~L~~~~l~~l-P~~i~~l~~L~~L~L~~n~~-~lP~   35 (324)
                      |+||+|+|..| +++-....+|++|+|++|.+ ++|+
T Consensus       298 L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~  334 (873)
T KOG4194|consen  298 LDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDE  334 (873)
T ss_pred             hccchhhhheeecchhhhcccceeEeccccccccCCh
Confidence            56777777644 33445567788888888888 8875

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=90.79  E-value=0.14  Score=50.29  Aligned_cols=65  Identities=23%  Similarity=0.334  Sum_probs=33.0

Q ss_pred             eecCCCCCccchhhcCCCCCCEEEccCCCc-cCCcccccCCc---cccccccccCcCCCC--CCCCcEEecCC
Q 020571            2 NLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSH---IEARNCKQLQSLPEL--PSCPEELDTSI   68 (324)
Q Consensus         2 ~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~---L~l~~C~~L~~lP~l--p~sL~~L~~~~   68 (324)
                      +|.+++|..+...+..+++|+.|+|++|.+ .|.. +..|..   |++.+ +.+..+..+  ..+|+.+++.+
T Consensus       101 ~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~-l~~l~~L~~L~l~~-N~i~~~~~~~~l~~L~~l~l~~  171 (414)
T KOG0531|consen  101 DLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG-LSTLTLLKELNLSG-NLISDISGLESLKSLKLLDLSY  171 (414)
T ss_pred             eccccchhhcccchhhhhcchheeccccccccccc-hhhccchhhheecc-CcchhccCCccchhhhcccCCc
Confidence            445555555554455566666666666665 5542 333332   55554 444444444  34455555544

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=90.37  E-value=0.08  Score=49.82  Aligned_cols=66  Identities=20%  Similarity=0.255  Sum_probs=48.0

Q ss_pred             CeecCCCCCccchhhcCCCCCCEEEccCCCc-cCC---cccccCCccccccccccCcCCCCC--CCCcEEecCC
Q 020571            1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-SLP---ELPVLLSHIEARNCKQLQSLPELP--SCPEELDTSI   68 (324)
Q Consensus         1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP---~~i~~L~~L~l~~C~~L~~lP~lp--~sL~~L~~~~   68 (324)
                      |++|.|.|..+-. +..|++|..||||+|.+ .+-   .-++++..|.|.+ +.++++-.|-  -||..||+.+
T Consensus       312 L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~-N~iE~LSGL~KLYSLvnLDl~~  383 (490)
T KOG1259|consen  312 LILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQ-NKIETLSGLRKLYSLVNLDLSS  383 (490)
T ss_pred             Eeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeeehhh-hhHhhhhhhHhhhhheeccccc
Confidence            5889999988875 99999999999999977 554   4455554477765 5556665553  4667777765

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=89.49  E-value=0.13  Score=49.95  Aligned_cols=55  Identities=25%  Similarity=0.431  Sum_probs=42.6

Q ss_pred             eecCCCCCccchh-hcCCCCCCEEEccCCCc-cC-CcccccCCc---cccccccccCcCCC
Q 020571            2 NLVENKLESLPAS-IGCLSSLEFLHLTRNNL-SL-PELPVLLSH---IEARNCKQLQSLPE   56 (324)
Q Consensus         2 ~L~~~~l~~lP~~-i~~l~~L~~L~L~~n~~-~l-P~~i~~L~~---L~l~~C~~L~~lP~   56 (324)
                      .|..|.|+.||+. ++.+++|+.||||.|+| .| |..++.|.+   |-+-+-.+++.||.
T Consensus        73 rLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k  133 (498)
T KOG4237|consen   73 RLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPK  133 (498)
T ss_pred             EeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhh
Confidence            5677889999884 57799999999999999 54 777887776   55555577777773

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=89.12  E-value=0.042  Score=57.10  Aligned_cols=72  Identities=21%  Similarity=0.258  Sum_probs=51.0

Q ss_pred             eecCCCCCccchhhcCCCCCCEEEccCCCc-cCCcccccCCc---cccccccccCcCCCCC---CCCcEEecCCCCCCCc
Q 020571            2 NLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSH---IEARNCKQLQSLPELP---SCPEELDTSILESLSK   74 (324)
Q Consensus         2 ~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~---L~l~~C~~L~~lP~lp---~sL~~L~~~~C~sL~~   74 (324)
                      +.++|.|..+-+++.-++.|+.|||+.|+| ..- .|..|.+   |+|++ +.|+.+|.+.   -.|..|.+.| ..|++
T Consensus       170 ~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsy-N~L~~vp~l~~~gc~L~~L~lrn-N~l~t  246 (1096)
T KOG1859|consen  170 SFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSY-NCLRHVPQLSMVGCKLQLLNLRN-NALTT  246 (1096)
T ss_pred             hcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhccccccccccc-chhccccccchhhhhheeeeecc-cHHHh
Confidence            345677777778888888888888888888 665 5666665   88876 6778888764   2467777766 34555


Q ss_pred             cC
Q 020571           75 HF   76 (324)
Q Consensus        75 ~~   76 (324)
                      +.
T Consensus       247 L~  248 (1096)
T KOG1859|consen  247 LR  248 (1096)
T ss_pred             hh
Confidence            44

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=89.06  E-value=0.2  Score=46.44  Aligned_cols=92  Identities=25%  Similarity=0.211  Sum_probs=54.3

Q ss_pred             CeecCCCCC-----ccchhhcCC-CCCCEEEccCCCc-c-----CCccccc---CCcccccccccc----CcCCC-CC--
Q 020571            1 MNLVENKLE-----SLPASIGCL-SSLEFLHLTRNNL-S-----LPELPVL---LSHIEARNCKQL----QSLPE-LP--   58 (324)
Q Consensus         1 ~~L~~~~l~-----~lP~~i~~l-~~L~~L~L~~n~~-~-----lP~~i~~---L~~L~l~~C~~L----~~lP~-lp--   58 (324)
                      |++++|.+.     .+...+..+ ++|+.|+|++|++ .     ++..+..   |..|+|++|.--    ..++. ++  
T Consensus       113 L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~  192 (319)
T cd00116         113 LKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKAN  192 (319)
T ss_pred             EEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhC
Confidence            467778775     355567777 8999999999986 2     2333443   333888876432    11221 11  


Q ss_pred             CCCcEEecCCCCCCCc-----cCCCC-CcccccceeccCCc
Q 020571           59 SCPEELDTSILESLSK-----HFRPT-ASRKLTYFMFTNCL   93 (324)
Q Consensus        59 ~sL~~L~~~~C~sL~~-----~~~~~-~~~~~~~l~~~nC~   93 (324)
                      .+|+.|++++|. +..     +.... ....+..|++++|.
T Consensus       193 ~~L~~L~L~~n~-i~~~~~~~l~~~~~~~~~L~~L~ls~n~  232 (319)
T cd00116         193 CNLEVLDLNNNG-LTDEGASALAETLASLKSLEVLNLGDNN  232 (319)
T ss_pred             CCCCEEeccCCc-cChHHHHHHHHHhcccCCCCEEecCCCc
Confidence            589999999873 321     11111 12346677887763

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=88.02  E-value=0.33  Score=49.58  Aligned_cols=37  Identities=27%  Similarity=0.436  Sum_probs=28.6

Q ss_pred             CeecCCCCCcc-chhhcCCCCCCEEEccCCCc-cCCccc
Q 020571            1 MNLVENKLESL-PASIGCLSSLEFLHLTRNNL-SLPELP   37 (324)
Q Consensus         1 ~~L~~~~l~~l-P~~i~~l~~L~~L~L~~n~~-~lP~~i   37 (324)
                      |||++|.|..+ +..+.++++|+.++|..|.+ .||...
T Consensus        83 LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~  121 (873)
T KOG4194|consen   83 LDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFG  121 (873)
T ss_pred             eeccccccccCcHHHHhcCCcceeeeeccchhhhccccc
Confidence            57888888754 44577888888888888888 888744

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=87.56  E-value=0.4  Score=44.40  Aligned_cols=70  Identities=23%  Similarity=0.248  Sum_probs=47.4

Q ss_pred             CeecCCCCC-----ccchhhcCCCCCCEEEccCCCc-c-----CCcccccCCc---cccccccccC--------cCCCCC
Q 020571            1 MNLVENKLE-----SLPASIGCLSSLEFLHLTRNNL-S-----LPELPVLLSH---IEARNCKQLQ--------SLPELP   58 (324)
Q Consensus         1 ~~L~~~~l~-----~lP~~i~~l~~L~~L~L~~n~~-~-----lP~~i~~L~~---L~l~~C~~L~--------~lP~lp   58 (324)
                      |+|++|++.     .++..+..+++|+.|+|++|.+ .     ++..+.++++   |++++|.--.        .++.-.
T Consensus       170 L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~  249 (319)
T cd00116         170 LNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPN  249 (319)
T ss_pred             EECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccC
Confidence            467888886     3566677778999999999976 3     2334444444   9999875221        122223


Q ss_pred             CCCcEEecCCCC
Q 020571           59 SCPEELDTSILE   70 (324)
Q Consensus        59 ~sL~~L~~~~C~   70 (324)
                      ..|+.|++.+|.
T Consensus       250 ~~L~~L~l~~n~  261 (319)
T cd00116         250 ISLLTLSLSCND  261 (319)
T ss_pred             CCceEEEccCCC
Confidence            789999999983

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=86.79  E-value=0.54  Score=41.90  Aligned_cols=66  Identities=23%  Similarity=0.240  Sum_probs=44.8

Q ss_pred             CeecCCCCCccchhhcCCCCCCEEEccCCCc-cCCcccccC----CccccccccccCcCCCCC-----CCCcEEecCC
Q 020571            1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLL----SHIEARNCKQLQSLPELP-----SCPEELDTSI   68 (324)
Q Consensus         1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~~L----~~L~l~~C~~L~~lP~lp-----~sL~~L~~~~   68 (324)
                      +||++|.|..++ .+..++.|.+|.|+.|.+ .|-..+..+    +.|.|.+ ++++.|-++-     +.|++|.+.+
T Consensus        47 iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn-Nsi~~l~dl~pLa~~p~L~~Ltll~  122 (233)
T KOG1644|consen   47 IDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN-NSIQELGDLDPLASCPKLEYLTLLG  122 (233)
T ss_pred             ecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecC-cchhhhhhcchhccCCccceeeecC
Confidence            478888888887 488899999999999999 887665443    2277765 4455444331     3556655554

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=82.66  E-value=0.77  Score=45.09  Aligned_cols=72  Identities=24%  Similarity=0.251  Sum_probs=49.8

Q ss_pred             ecCCCCCccchhhcCCCCCCEEEccCCCc-cCCcccccCCc---cccccccccCcCCCCC--CCCcEEecCCCCCCCccC
Q 020571            3 LVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSH---IEARNCKQLQSLPELP--SCPEELDTSILESLSKHF   76 (324)
Q Consensus         3 L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~---L~l~~C~~L~~lP~lp--~sL~~L~~~~C~sL~~~~   76 (324)
                      +..+.|.++-..++.+.+|+.|++.+|.+ .+...+..+.+   |+|++ +++..+..+.  ..|+.|++.++ .+..+.
T Consensus        79 l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~-N~I~~i~~l~~l~~L~~L~l~~N-~i~~~~  156 (414)
T KOG0531|consen   79 LRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSF-NKITKLEGLSTLTLLKELNLSGN-LISDIS  156 (414)
T ss_pred             cchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccc-cccccccchhhccchhhheeccC-cchhcc
Confidence            44555666555688899999999999999 77764555554   88876 5666665442  44888888873 444444

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=82.54  E-value=0.24  Score=51.74  Aligned_cols=66  Identities=30%  Similarity=0.381  Sum_probs=47.1

Q ss_pred             CeecCCCCCccchhhcCCCCCCEEEccCCCc-cCCc-cccc--CCccccccccccCcCCCC--CCCCcEEecCC
Q 020571            1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPE-LPVL--LSHIEARNCKQLQSLPEL--PSCPEELDTSI   68 (324)
Q Consensus         1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~-~i~~--L~~L~l~~C~~L~~lP~l--p~sL~~L~~~~   68 (324)
                      |||+.|++.++- .+..++.|+.|||+.|.+ .+|. +...  |..|+|.+ +.|++|-++  ..+|+.||++.
T Consensus       192 LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrn-N~l~tL~gie~LksL~~LDlsy  263 (1096)
T KOG1859|consen  192 LNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRN-NALTTLRGIENLKSLYGLDLSY  263 (1096)
T ss_pred             hccchhhhhhhH-HHHhcccccccccccchhccccccchhhhhheeeeecc-cHHHhhhhHHhhhhhhccchhH
Confidence            689999998887 799999999999999999 9986 1111  11266654 555555544  36677777664

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=81.94  E-value=0.15  Score=42.90  Aligned_cols=76  Identities=18%  Similarity=0.276  Sum_probs=54.0

Q ss_pred             CeecCCCCCccchhhcCCC---CCCEEEccCCCc-cCCcccccCCc----cccccccccCcCCCC---CCCCcEEecCCC
Q 020571            1 MNLVENKLESLPASIGCLS---SLEFLHLTRNNL-SLPELPVLLSH----IEARNCKQLQSLPEL---PSCPEELDTSIL   69 (324)
Q Consensus         1 ~~L~~~~l~~lP~~i~~l~---~L~~L~L~~n~~-~lP~~i~~L~~----L~l~~C~~L~~lP~l---p~sL~~L~~~~C   69 (324)
                      ++|+.|.|..+++-+..++   .|...+|++|.| .+|..+.....    |+|.+ +.+..+|+-   .+.|+.|++.. 
T Consensus        32 ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~-neisdvPeE~Aam~aLr~lNl~~-  109 (177)
T KOG4579|consen   32 LDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLAN-NEISDVPEELAAMPALRSLNLRF-  109 (177)
T ss_pred             cccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcch-hhhhhchHHHhhhHHhhhccccc-
Confidence            4788888876666655554   556669999999 99987766642    99987 677888853   36788888876 


Q ss_pred             CCCCccCCC
Q 020571           70 ESLSKHFRP   78 (324)
Q Consensus        70 ~sL~~~~~~   78 (324)
                      ..|...|..
T Consensus       110 N~l~~~p~v  118 (177)
T KOG4579|consen  110 NPLNAEPRV  118 (177)
T ss_pred             CccccchHH
Confidence            345555443

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=80.96  E-value=0.16  Score=47.79  Aligned_cols=87  Identities=15%  Similarity=0.109  Sum_probs=47.1

Q ss_pred             chhhcCCCCCCEEEccCCC-c-c--CCcccccCCc---cccccccccCcCC-----CCCCCCcEEecCCCCCCCccCC-C
Q 020571           12 PASIGCLSSLEFLHLTRNN-L-S--LPELPVLLSH---IEARNCKQLQSLP-----ELPSCPEELDTSILESLSKHFR-P   78 (324)
Q Consensus        12 P~~i~~l~~L~~L~L~~n~-~-~--lP~~i~~L~~---L~l~~C~~L~~lP-----~lp~sL~~L~~~~C~sL~~~~~-~   78 (324)
                      -..|..=..|+.|+|++++ | +  +---+.+++.   |+|+.|-.-+..-     .+..+|..|+++||..--..+- .
T Consensus       227 ~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~  306 (419)
T KOG2120|consen  227 VNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLS  306 (419)
T ss_pred             HHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHH
Confidence            3345556789999998874 2 1  1111222332   6666665444332     2446788888888753211110 0


Q ss_pred             ---CCcccccceeccCCcccchh
Q 020571           79 ---TASRKLTYFMFTNCLKLNKS   98 (324)
Q Consensus        79 ---~~~~~~~~l~~~nC~~L~~~   98 (324)
                         -..+++.+|+++.|..|...
T Consensus       307 tL~~rcp~l~~LDLSD~v~l~~~  329 (419)
T KOG2120|consen  307 TLVRRCPNLVHLDLSDSVMLKND  329 (419)
T ss_pred             HHHHhCCceeeeccccccccCch
Confidence               01134567888888888653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	324
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-07
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-07
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-07
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	8e-04
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-07
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-07
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-05
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-07
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-06
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-06
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-04
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-04

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 51.8 bits (124), Expect = 2e-07
 Identities = 27/67 (40%), Positives = 34/67 (50%), Gaps = 5/67 (7%)

Query: 2   NLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSHIEARNCKQLQSLPELPSC 60
               N+L SLP        L+ L ++ N L SLP LP  L  + A N  +L SLP LPS 
Sbjct: 167 WAYNNQLTSLPMLPS---GLQELSVSDNQLASLPTLPSELYKLWAYNN-RLTSLPALPSG 222

Query: 61  PEELDTS 67
            +EL  S
Sbjct: 223 LKELIVS 229

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 50.7 bits (121), Expect = 3e-07
 Identities = 22/66 (33%), Positives = 26/66 (39%), Gaps = 3/66 (4%)

Query: 2   NLVENKLESLPASIGCLSSLEFLHLTRNNLSLPELPVLLSHIEARNCKQLQSLPELPSCP 61
            +  N+L SLP     L  L           LP LP  L  +      QL SLP LP   
Sbjct: 87  EVSGNQLTSLPVLPPGLLELSIFSNPLT--HLPALPSGLCKLWIFGN-QLTSLPVLPPGL 143

Query: 62  EELDTS 67
           +EL  S
Sbjct: 144 QELSVS 149

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 48.4 bits (115), Expect = 2e-06
 Identities = 25/84 (29%), Positives = 34/84 (40%), Gaps = 19/84 (22%)

Query: 2   NLVENKLESLPASIGCL-----------------SSLEFLHLTRNNL-SLPELPVLLSHI 43
           ++ +N+L SLP     L                 S L+ L ++ N L SLP LP  L  +
Sbjct: 187 SVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVLPSELKEL 246

Query: 44  EARNCKQLQSLPELPSCPEELDTS 67
                 +L SLP LPS    L   
Sbjct: 247 MVSGN-RLTSLPMLPSGLLSLSVY 269

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 46.8 bits (111), Expect = 6e-06
 Identities = 25/70 (35%), Positives = 33/70 (47%), Gaps = 4/70 (5%)

Query: 2   NLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSHIEARNCKQLQSLPELPSC 60
           N+ E+ L +LP  +   + +  L +  NNL SLP LP  L  +E     QL SLP LP  
Sbjct: 46  NVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPALPPELRTLEVSGN-QLTSLPVLPPG 102

Query: 61  PEELDTSILE 70
             EL      
Sbjct: 103 LLELSIFSNP 112

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 51.5 bits (123), Expect = 2e-07
 Identities = 26/66 (39%), Positives = 34/66 (51%), Gaps = 5/66 (7%)

Query: 1   MNLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSHIEARNCKQLQSLPELPS 59
           +++  N+L  LP        LE+++   N L  LPELP  L  +  RN  QL  LPELP 
Sbjct: 125 LDVDNNQLTMLPELPA---LLEYINADNNQLTMLPELPTSLEVLSVRNN-QLTFLPELPE 180

Query: 60  CPEELD 65
             E LD
Sbjct: 181 SLEALD 186

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 50.7 bits (121), Expect = 3e-07
 Identities = 29/80 (36%), Positives = 40/80 (50%), Gaps = 11/80 (13%)

Query: 2   NLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSHIEARNCKQLQSLPELPSC 60
            + +N L SLP       SLE+L    N L +LPELP  L H++  N  QL  LPELP+ 
Sbjct: 86  EITQNALISLPELPA---SLEYLDACDNRLSTLPELPASLKHLDVDNN-QLTMLPELPAL 141

Query: 61  PEELD------TSILESLSK 74
            E ++      T + E  + 
Sbjct: 142 LEYINADNNQLTMLPELPTS 161

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 50.0 bits (119), Expect = 6e-07
 Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 4/65 (6%)

Query: 2   NLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSHIEARNCKQLQSLPELPSC 60
            L    L SLP ++     +  L +T+N L SLPELP  L +++A +  +L +LPELP+ 
Sbjct: 65  QLNRLNLSSLPDNLP--PQITVLEITQNALISLPELPASLEYLDACDN-RLSTLPELPAS 121

Query: 61  PEELD 65
            + LD
Sbjct: 122 LKHLD 126

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 47.3 bits (112), Expect = 5e-06
 Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 5/58 (8%)

Query: 2   NLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSHIEARNCKQLQSLPELP 58
           N   N+L  LP       SLE L +  N L  LPELP  L  ++      L+SLP +P
Sbjct: 146 NADNNQLTMLPELPT---SLEVLSVRNNQLTFLPELPESLEALDVSTN-LLESLPAVP 199

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 40.0 bits (93), Expect = 8e-04
 Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 9/74 (12%)

Query: 2   NLVENKLESLPASIGCLSSLEFLHLTRNNLSLPELPVLLSHIEARNCKQLQSLPELPSCP 61
              EN++  +P +I  L     + L  N LS              +  Q  + P+     
Sbjct: 213 RCRENRITHIPENILSLDPTCTIILEDNPLS--SRIR-------ESLSQQTAQPDYHGPR 263

Query: 62  EELDTSILESLSKH 75
                S  +  + H
Sbjct: 264 IYFSMSDGQQNTLH 277

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 49.9 bits (120), Expect = 4e-07
 Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 5/79 (6%)

Query: 1   MNLVENKLESLPASIGCLSSLEFLHLTRNNL-SLP-ELPVL--LSHIEARNCKQLQSLP- 55
           M +    L  LP ++   + LE L L RN L +LP  +  L  L  +  R C +L  LP 
Sbjct: 109 MTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPE 168

Query: 56  ELPSCPEELDTSILESLSK 74
            L S     +   L +L  
Sbjct: 169 PLASTDASGEHQGLVNLQS 187

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 49.2 bits (118), Expect = 6e-07
 Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 7/61 (11%)

Query: 2   NLVENKLESLPASIGCLSSLEFLHLTRNNLSLPELP------VLLSHIEARNCKQLQSLP 55
            +  + L +L  +I  L  LE L L     +L   P        L  +  ++C  L +LP
Sbjct: 212 KIRNSPLSALGPAIHHLPKLEELDLRGCT-ALRNYPPIFGGRAPLKRLILKDCSNLLTLP 270

Query: 56  E 56
            
Sbjct: 271 L 271

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 47.2 bits (113), Expect = 3e-06
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 4/59 (6%)

Query: 2   NLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSHIE---ARNCKQLQSLPE 56
            L    + SLPASI  L +L+ L +  + L +L      L  +E    R C  L++ P 
Sbjct: 189 RLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPP 247

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 7/60 (11%)

Query: 6   NKLESLPASIGCLSSLEFLHLTRNNLSLPELPVLLSHIEA------RNCKQLQSLPELPS 59
           + L +LP  I  L+ LE L L R  ++L  LP L++ + A          Q Q     P 
Sbjct: 264 SNLLTLPLDIHRLTQLEKLDL-RGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPV 322

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 43.4 bits (103), Expect = 5e-05
 Identities = 14/61 (22%), Positives = 20/61 (32%), Gaps = 9/61 (14%)

Query: 2   NLVENKLESLPASIGCLSSLEFLHLTRNNLSLPELP------VLLSHIEARNCKQLQSLP 55
            L    L   P     LS L+ + +    L   ELP        L  +       L++LP
Sbjct: 87  ELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARN-PLRALP 143

Query: 56  E 56
            
Sbjct: 144 A 144

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 4/55 (7%), Positives = 19/55 (34%)

Query: 2   NLVENKLESLPASIGCLSSLEFLHLTRNNLSLPELPVLLSHIEARNCKQLQSLPE 56
             + N +  +  ++  L+ L   ++  +      +     +  +   +Q ++   
Sbjct: 189 GQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDL 243

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 21/109 (19%), Positives = 36/109 (33%), Gaps = 8/109 (7%)

Query: 2   NLVENKLE-SLPASIGCLSSLEFLHLTRNNLSLPELPVLLSHI------EARNCKQLQSL 54
           +L        +P +IG L+ LE L L  +   + E       I      E +   ++   
Sbjct: 87  SLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQ 146

Query: 55  PELPSCPEELDTSILESLSKHFRP-TASRKLTYFMFTNCLKLNKSGNNI 102
                     D S L     +  P   S K +  +     ++ +  NNI
Sbjct: 147 KTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNI 195

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 9/51 (17%), Positives = 22/51 (43%), Gaps = 2/51 (3%)

Query: 6   NKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSHI-EARNCKQLQSL 54
             L  LP  +  L  ++ +++  N   S  +L      + +A   +++Q +
Sbjct: 260 PNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQII 310

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 5/68 (7%)

Query: 1   MNLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSHIEARNCKQLQSLPELPS 59
           +    N+LE LP  +  L  L  ++   N+L  LP+LP+ L  I A N   L+ LPEL +
Sbjct: 178 IAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNN-ILEELPELQN 235

Query: 60  CP--EELD 65
            P    + 
Sbjct: 236 LPFLTTIY 243

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 47.7 bits (114), Expect = 3e-06
 Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 3/67 (4%)

Query: 2   NLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSHIEARNCKQLQSLPELPSC 60
               N LE LP  +  L  L  ++   N L +LP+LP  L  +  R+   L  LPELP  
Sbjct: 221 VAGNNILEELP-ELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDN-YLTDLPELPQS 278

Query: 61  PEELDTS 67
              LD S
Sbjct: 279 LTFLDVS 285

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 46.1 bits (110), Expect = 8e-06
 Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 10/79 (12%)

Query: 2   NLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSHIEARNCKQLQSLPELPSC 60
           N+  NKL  LPA       LE L  + N+L  +PELP  L  +       L+  P++P  
Sbjct: 323 NVSNNKLIELPALPP---RLERLIASFNHLAEVPELPQNLKQLHVEYN-PLREFPDIPES 378

Query: 61  PEELD-----TSILESLSK 74
            E+L        + E    
Sbjct: 379 VEDLRMNSHLAEVPELPQN 397

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 5/66 (7%)

Query: 2   NLVENKLESLPASIGCLSSLEFLHLTRNNLSLPELPVLLSHIEARNCKQLQSLPELPSCP 61
               N L  LP     L SL   +      +L +LP LL ++   N  QL+ LPEL +  
Sbjct: 97  VASCNSLTELPELPQSLKSLLVDNNNLK--ALSDLPPLLEYLGVSNN-QLEKLPELQNSS 153

Query: 62  --EELD 65
             + +D
Sbjct: 154 FLKIID 159

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 6/67 (8%)

Query: 2   NLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSHIEARNCKQLQSLPELPSC 60
               N L  +P       +L+ LH+  N L   P++P  +  +   +   L  +PELP  
Sbjct: 343 IASFNHLAEVPELPQ---NLKQLHVEYNPLREFPDIPESVEDLRMNS--HLAEVPELPQN 397

Query: 61  PEELDTS 67
            ++L   
Sbjct: 398 LKQLHVE 404

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 25/69 (36%), Positives = 33/69 (47%), Gaps = 7/69 (10%)

Query: 2   NLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVL--LSHIEARNCKQLQSLPELP 58
           ++  N L+ LP       SLEF+    N L  LPEL  L  L+ I A N   L+ LP+LP
Sbjct: 159 DVDNNSLKKLPDLPP---SLEFIAAGNNQLEELPELQNLPFLTAIYADNN-SLKKLPDLP 214

Query: 59  SCPEELDTS 67
              E +   
Sbjct: 215 LSLESIVAG 223

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 24/67 (35%), Positives = 30/67 (44%), Gaps = 5/67 (7%)

Query: 2   NLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSHIEARNCKQLQSLPELPSC 60
            L    L SLP        LE L  + N+L  LPELP  L  +   N   L++L +LP  
Sbjct: 77  ELNNLGLSSLPELPP---HLESLVASCNSLTELPELPQSLKSLLVDNN-NLKALSDLPPL 132

Query: 61  PEELDTS 67
            E L  S
Sbjct: 133 LEYLGVS 139

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 3/67 (4%)

Query: 1   MNLVENKLESLPASIGCLSSLEFLHLTRNNLSLPELPVLLSHIEARNCKQLQSLPELPSC 60
           +N+ +N L  LP     L+ L+      +   L ELP  L ++ A +  +++SL +LP  
Sbjct: 262 LNVRDNYLTDLPELPQSLTFLDVSENIFS--GLSELPPNLYYLNASSN-EIRSLCDLPPS 318

Query: 61  PEELDTS 67
            EEL+ S
Sbjct: 319 LEELNVS 325

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 45.6 bits (108), Expect = 1e-05
 Identities = 17/110 (15%), Positives = 36/110 (32%), Gaps = 3/110 (2%)

Query: 2   NLVENKLESLPASIGCLSSLEFLHLTRNNLSLPELPVLLSHIEARNCKQLQSLPELPSCP 61
           +L  NKL  +  ++    +LE   L  N      L    S  +       Q++ +L    
Sbjct: 220 SLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTG-Q 278

Query: 62  EELDTSILESLSKHFRPTASRKLTYFMFTNCLKLNKSGNNILADSQQRIQ 111
            E + ++      H+       L        + L +  + +L+      +
Sbjct: 279 NEEECTVPTLG--HYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETE 326

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 40.2 bits (94), Expect = 7e-04
 Identities = 20/126 (15%), Positives = 36/126 (28%), Gaps = 16/126 (12%)

Query: 2   NLVENKLESLPASIGCLSSLEFLHLTRNNLSLPELPVLLSHIEARNCKQLQSL-----PE 56
           +L  NKL  +       + + ++ L  N L    +   L        + L+         
Sbjct: 197 DLSSNKLAFMGPEFQSAAGVTWISLRNNKLV--LIEKALR-----FSQNLEHFDLRGNGF 249

Query: 57  LPSCPEELDTSILESLSKHFRPTASRKLTYFMFTNC--LKLNKSGNNILADSQQRIQHRV 114
                 +  +      +        +KLT      C    L   G     D       R+
Sbjct: 250 HCGTLRDFFSKNQRVQT--VAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRL 307

Query: 115 VALLRQ 120
           +AL R+
Sbjct: 308 IALKRK 313

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 45.6 bits (108), Expect = 2e-05
 Identities = 14/119 (11%), Positives = 35/119 (29%), Gaps = 28/119 (23%)

Query: 2   NLVENKLESLPASIG-CLSSLEFLHLTRNNLSLPELPVLLSHIEARNCKQLQSL------ 54
            L  N++E +P         +E L  + N L    +P   +   A++   + S+      
Sbjct: 601 KLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK--YIP---NIFNAKSVYVMGSVDFSYNK 655

Query: 55  -----PELPSCPEELDTSILESLS------KHFRPTASRKLTYFMFTNCLKLNKSGNNI 102
                  +    ++       +++      + F             +    +  S N +
Sbjct: 656 IGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATG-----SPISTIILSNNLM 709

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 45.3 bits (107), Expect = 2e-05
 Identities = 7/55 (12%), Positives = 22/55 (40%)

Query: 2   NLVENKLESLPASIGCLSSLEFLHLTRNNLSLPELPVLLSHIEARNCKQLQSLPE 56
             + N++  +  +I  L+ L+ ++   +  +   + V      +   KQ ++   
Sbjct: 431 GNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEEL 485

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 43.7 bits (103), Expect = 6e-05
 Identities = 9/52 (17%), Positives = 20/52 (38%), Gaps = 3/52 (5%)

Query: 6   NKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSHI--EARNCKQLQSL 54
             +  LP  +  L  L+ L++  N   S  +L    + +  +     ++Q  
Sbjct: 502 PNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIF 553

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 43.3 bits (102), Expect = 8e-05
 Identities = 20/132 (15%), Positives = 35/132 (26%), Gaps = 31/132 (23%)

Query: 2   NLVENKLESLPAS--IGCLSSLEFLHLTRNNLS-LPELPVL------------LSHIEA- 45
            +  N LE  PAS  +  +  L  L    N +  L                  +  I   
Sbjct: 554 YMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPED 613

Query: 46  --RNCKQLQSL-------PELPSCPEELDTSILESLS------KHFRPTASRKLTYFMFT 90
                 Q++ L         +P+        ++ S+              S  +  +   
Sbjct: 614 FCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGI 673

Query: 91  NCLKLNKSGNNI 102
           N   +  S N I
Sbjct: 674 NASTVTLSYNEI 685

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 42.6 bits (100), Expect = 1e-04
 Identities = 23/117 (19%), Positives = 42/117 (35%), Gaps = 15/117 (12%)

Query: 2   NLVENKLESLPASI-GCLSSLEFLHLTRNNL-SLPELPVLLSHIEARNCKQLQSLP---- 55
            L  N+++  P  +    S +  + L+ N + S+PE  +       +N   L ++     
Sbjct: 679 TLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFN 738

Query: 56  ELPSCPEELDTSILESLSK------HFR--PTASRKLTYFMFTNCLK-LNKSGNNIL 103
           +L S  ++   + L  LS        F   PT     +           +  GN IL
Sbjct: 739 KLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRIL 795

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 40.2 bits (94), Expect = 7e-04
 Identities = 12/103 (11%), Positives = 31/103 (30%), Gaps = 20/103 (19%)

Query: 4   VENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVL-----LSHIEARNCKQLQSLPEL 57
           ++     L         ++  ++  NNL   P    L     L  ++  +  +++ L   
Sbjct: 533 LKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHN-KVRHLEAF 591

Query: 58  PSCP--EELD------TSILESLSKHFRPTASRKLTYFMFTNC 92
            +     +L         I E          + ++    F++ 
Sbjct: 592 GTNVKLTDLKLDYNQIEEIPEDFCAF-----TDQVEGLGFSHN 629

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 43.4 bits (103), Expect = 5e-05
 Identities = 15/66 (22%), Positives = 24/66 (36%)

Query: 2   NLVENKLESLPASIGCLSSLEFLHLTRNNLSLPELPVLLSHIEARNCKQLQSLPELPSCP 61
           +L  NKL  +  ++    +LE   L  N      L    S  +       Q++ +L    
Sbjct: 220 SLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQN 279

Query: 62  EELDTS 67
           EE  T 
Sbjct: 280 EEECTV 285

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 39.6 bits (93), Expect = 7e-04
 Identities = 9/53 (16%), Positives = 18/53 (33%), Gaps = 7/53 (13%)

Query: 2   NLVENKLESLPASIGCLSSLEFLHLTRNNLSLPELPVLLSHIEARNCKQLQSL 54
           +L  NKL  +       + + ++ L  N L    +   L        + L+  
Sbjct: 197 DLSSNKLAFMGPEFQSAAGVTWISLRNNKLV--LIEKALR-----FSQNLEHF 242

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 41.4 bits (98), Expect = 2e-04
 Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 12/57 (21%)

Query: 1   MNLVENKLE-SLPASIGCLSSLEFLHLTRNNLS--LPELPVLLSHIEARNCKQLQSL 54
           ++L  N LE       G   + + +HL +N+L+  L ++            K L  L
Sbjct: 202 VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKV---------GLSKNLNGL 249

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 40.3 bits (95), Expect = 7e-04
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 7/54 (12%)

Query: 2   NLVENKLE-SLPASIGCLSSLEFLHLTRNNLSLPELPVLLSHIEARNCKQLQSL 54
            L  N LE  +P  +  + +LE L L  N+L+  E+P  LS     NC  L  +
Sbjct: 448 KLWLNMLEGEIPQELMYVKTLETLILDFNDLT-GEIPSGLS-----NCTNLNWI 495

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	324
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	98.76
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	98.36
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.23
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.17
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	98.02
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.01
3e6j_A	229	Variable lymphocyte receptor diversity region; var	97.99
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	97.98
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	97.98
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	97.97
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	97.96
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	97.96
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	97.96
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	97.95
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	97.94
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	97.94
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	97.94
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	97.92
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	97.92
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	97.91
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	97.9
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	97.89
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	97.88
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	97.87
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	97.87
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	97.86
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	97.86
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	97.86
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	97.86
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	97.85
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	97.85
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	97.85
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	97.85
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	97.83
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	97.83
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	97.81
3e6j_A	229	Variable lymphocyte receptor diversity region; var	97.78
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	97.78
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	97.78
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	97.77
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	97.77
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	97.76
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	97.75
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	97.75
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	97.75
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	97.74
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	97.72
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	97.72
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	97.71
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	97.71
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	97.71
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	97.7
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	97.69
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	97.69
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	97.69
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	97.69
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	97.69
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	97.69
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	97.68
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	97.68
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.67
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	97.67
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	97.67
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	97.66
3m19_A	251	Variable lymphocyte receptor A diversity region; a	97.65
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	97.64
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	97.64
3m19_A	251	Variable lymphocyte receptor A diversity region; a	97.63
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	97.63
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	97.61
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	97.61
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	97.61
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	97.6
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	97.6
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	97.59
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	97.57
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	97.56
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	97.55
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	97.54
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	97.53
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	97.51
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	97.5
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	97.5
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	97.5
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	97.48
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	97.48
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	97.47
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	97.47
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	97.47
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	97.46
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	97.46
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	97.44
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	97.44
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	97.43
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	97.43
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	97.42
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	97.41
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	97.39
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	97.38
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	97.37
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	97.35
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	97.35
1o6v_A	466	Internalin A; bacterial infection, extracellular r	97.33
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	97.32
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	97.32
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	97.3
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	97.3
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	97.29
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	97.28
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	97.28
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	97.27
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	97.26
1o6v_A	466	Internalin A; bacterial infection, extracellular r	97.25
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	97.18
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	97.17
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	97.17
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	97.16
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	97.15
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	97.14
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	97.13
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	97.11
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	97.1
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	97.09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	97.04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	97.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	96.99
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	96.99
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	96.91
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	96.74
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	95.79
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	95.37
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	95.11
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	94.98
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	94.94
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	94.79
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	94.61
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	93.78
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	93.63
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	93.56
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	93.18
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	92.63
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	92.59
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	91.58
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	90.66
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	90.54
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	88.01
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	87.97
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	86.77
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	86.42
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	83.85
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	82.21
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	80.75
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	80.62

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=98.76  E-value=2.3e-08  Score=93.30  Aligned_cols=77  Identities=25%  Similarity=0.273  Sum_probs=43.8

Q ss_pred             eecCCCCCccchhhcCCCCCCEEEccCCCc-cCCcccccCCc---cccccccccCcCCCC---CCCCcEEecCCCCCCCc
Q 020571            2 NLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSH---IEARNCKQLQSLPEL---PSCPEELDTSILESLSK   74 (324)
Q Consensus         2 ~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~---L~l~~C~~L~~lP~l---p~sL~~L~~~~C~sL~~   74 (324)
                      +|++|.|+.+|..++.+++|+.|+|++|.+ .+|..+..+++   |+|++|..+..+|..   .++|+.|++.+|..+..
T Consensus       189 ~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~  268 (328)
T 4fcg_A          189 RLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLT  268 (328)
T ss_dssp             EEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCB
T ss_pred             ECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhh
Confidence            455555555665566666666666666666 66655555554   566665555555543   24556666666555555


Q ss_pred             cCCC
Q 020571           75 HFRP   78 (324)
Q Consensus        75 ~~~~   78 (324)
                      +|..
T Consensus       269 ~p~~  272 (328)
T 4fcg_A          269 LPLD  272 (328)
T ss_dssp             CCTT
T ss_pred             cchh
Confidence            5543

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=98.36  E-value=6.9e-07  Score=83.23  Aligned_cols=80  Identities=24%  Similarity=0.222  Sum_probs=71.9

Q ss_pred             CeecCCCCCccchhhcCCCCCCEEEccCCCc--cCCcccccCCc---cccccccccCcCCCC---CCCCcEEecCCCCCC
Q 020571            1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL--SLPELPVLLSH---IEARNCKQLQSLPEL---PSCPEELDTSILESL   72 (324)
Q Consensus         1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~--~lP~~i~~L~~---L~l~~C~~L~~lP~l---p~sL~~L~~~~C~sL   72 (324)
                      |+|++|.|..+|..++.+++|+.|+|++|++  .+|..+..+++   |+|++|..+..+|..   .++|+.|++++|..+
T Consensus       211 L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~  290 (328)
T 4fcg_A          211 LKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNL  290 (328)
T ss_dssp             EEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTC
T ss_pred             EEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCch
Confidence            5789999999999999999999999999987  89998888887   999999999999964   378999999999999


Q ss_pred             CccCCCCC
Q 020571           73 SKHFRPTA   80 (324)
Q Consensus        73 ~~~~~~~~   80 (324)
                      +.+|..+.
T Consensus       291 ~~iP~~l~  298 (328)
T 4fcg_A          291 SRLPSLIA  298 (328)
T ss_dssp             CCCCGGGG
T ss_pred             hhccHHHh
Confidence            99987654

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.23  E-value=1.4e-06  Score=90.13  Aligned_cols=91  Identities=19%  Similarity=0.092  Sum_probs=74.6

Q ss_pred             CeecCCCCCccchhhcCCCCCCEEEccCCCc-cCCcccccCCc---cccccccccCcCCCCC---CCCcEEecCCCCCCC
Q 020571            1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSH---IEARNCKQLQSLPELP---SCPEELDTSILESLS   73 (324)
Q Consensus         1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~---L~l~~C~~L~~lP~lp---~sL~~L~~~~C~sL~   73 (324)
                      |+|++|.|..||..++.+++|+.|+|++|.+ .||.+|.+|++   |+|++++ |..||...   .+|+.|++.+| .|.
T Consensus       229 L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N-~l~  306 (727)
T 4b8c_D          229 LDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQLKYFYFFDN-MVT  306 (727)
T ss_dssp             EECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGTTCSEEECCSS-CCC
T ss_pred             EECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCc-CCccChhhcCCCCCCEEECCCC-CCC
Confidence            5788999999999999999999999999999 99999988887   9999854 66888643   68999999987 678


Q ss_pred             ccCCCCCc-ccccceeccCCc
Q 020571           74 KHFRPTAS-RKLTYFMFTNCL   93 (324)
Q Consensus        74 ~~~~~~~~-~~~~~l~~~nC~   93 (324)
                      .+|..+.. ..+..|+++++.
T Consensus       307 ~lp~~~~~l~~L~~L~L~~N~  327 (727)
T 4b8c_D          307 TLPWEFGNLCNLQFLGVEGNP  327 (727)
T ss_dssp             CCCSSTTSCTTCCCEECTTSC
T ss_pred             ccChhhhcCCCccEEeCCCCc
Confidence            88876543 456677776653

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.17  E-value=2e-06  Score=86.41  Aligned_cols=89  Identities=20%  Similarity=0.285  Sum_probs=71.4

Q ss_pred             CeecCCCCCccchhhcCCCCCCEEEccCCCc-cCCcccccCCc---cccccccccCcCCCCC--CCCcEEecCCCCCCCc
Q 020571            1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSH---IEARNCKQLQSLPELP--SCPEELDTSILESLSK   74 (324)
Q Consensus         1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~---L~l~~C~~L~~lP~lp--~sL~~L~~~~C~sL~~   74 (324)
                      |+|++|+|+.+|. ++.+++|+.|+|++|.+ .||..|++|++   |+|++ +.+..+|.+.  ++|+.|+++++ .|..
T Consensus       446 L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~-N~l~~lp~l~~l~~L~~L~Ls~N-~l~~  522 (567)
T 1dce_A          446 LHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASD-NALENVDGVANLPRLQELLLCNN-RLQQ  522 (567)
T ss_dssp             EECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCS-SCCCCCGGGTTCSSCCEEECCSS-CCCS
T ss_pred             EEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCC-CCCCCCcccCCCCCCcEEECCCC-CCCC
Confidence            5799999999997 99999999999999999 99999999988   99998 4677788553  78999999986 5666


Q ss_pred             c--CCCCC-cccccceeccCC
Q 020571           75 H--FRPTA-SRKLTYFMFTNC   92 (324)
Q Consensus        75 ~--~~~~~-~~~~~~l~~~nC   92 (324)
                      +  |..+. ...+..|+++++
T Consensus       523 ~~~p~~l~~l~~L~~L~L~~N  543 (567)
T 1dce_A          523 SAAIQPLVSCPRLVLLNLQGN  543 (567)
T ss_dssp             SSTTGGGGGCTTCCEEECTTS
T ss_pred             CCCcHHHhcCCCCCEEEecCC
Confidence            6  44433 244556666553

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.05  E-value=8.8e-06  Score=73.32  Aligned_cols=88  Identities=20%  Similarity=0.284  Sum_probs=62.8

Q ss_pred             CeecCCCCCccchhhcCCCCCCEEEccCCCc-cCCcccccCCc---cccccccccCcCCCCC-CCCcEEecCCCCCCCcc
Q 020571            1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSH---IEARNCKQLQSLPELP-SCPEELDTSILESLSKH   75 (324)
Q Consensus         1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~---L~l~~C~~L~~lP~lp-~sL~~L~~~~C~sL~~~   75 (324)
                      |+|++|.|..+| .++.+++|+.|+|++|.+ .+|. +.++++   |+|+++ ++..+|.++ .+|+.|++++| .+..+
T Consensus        46 L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N-~l~~l~~~~~~~L~~L~L~~N-~l~~~  121 (263)
T 1xeu_A           46 FNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRN-RLKNLNGIPSACLSRLFLDNN-ELRDT  121 (263)
T ss_dssp             EECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSS-CCSCCTTCCCSSCCEEECCSS-CCSBS
T ss_pred             EECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCC-ccCCcCccccCcccEEEccCC-ccCCC
Confidence            467888888888 688888888888888888 8887 777766   888874 566677655 68888888886 56665


Q ss_pred             CCCCCcccccceeccCC
Q 020571           76 FRPTASRKLTYFMFTNC   92 (324)
Q Consensus        76 ~~~~~~~~~~~l~~~nC   92 (324)
                      +.-.....+..|+++++
T Consensus       122 ~~l~~l~~L~~L~Ls~N  138 (263)
T 1xeu_A          122 DSLIHLKNLEILSIRNN  138 (263)
T ss_dssp             GGGTTCTTCCEEECTTS
T ss_pred             hhhcCcccccEEECCCC
Confidence            43223344555666554

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=98.02  E-value=4.9e-06  Score=86.12  Aligned_cols=95  Identities=21%  Similarity=0.200  Sum_probs=68.6

Q ss_pred             CeecCCCCC-ccchhhcCCCCCCEEEccCCCc--cCCcccccCCc---cccccccccCcCCCC---CCCCcEEecCCCCC
Q 020571            1 MNLVENKLE-SLPASIGCLSSLEFLHLTRNNL--SLPELPVLLSH---IEARNCKQLQSLPEL---PSCPEELDTSILES   71 (324)
Q Consensus         1 ~~L~~~~l~-~lP~~i~~l~~L~~L~L~~n~~--~lP~~i~~L~~---L~l~~C~~L~~lP~l---p~sL~~L~~~~C~s   71 (324)
                      |||++|+|. .+|..++.+++|+.|+|++|.+  .+|..|++|+.   |+|++++....+|+.   .++|+.|+++++.-
T Consensus       637 LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l  716 (768)
T 3rgz_A          637 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL  716 (768)
T ss_dssp             EECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEE
T ss_pred             EECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcc
Confidence            478888886 7888889999999999999988  88888888877   888887777788854   36788888888765


Q ss_pred             CCccCCCCCcccccceeccCCccc
Q 020571           72 LSKHFRPTASRKLTYFMFTNCLKL   95 (324)
Q Consensus        72 L~~~~~~~~~~~~~~l~~~nC~~L   95 (324)
                      -..+|.......+....|.++..|
T Consensus       717 ~g~iP~~~~~~~~~~~~~~gN~~L  740 (768)
T 3rgz_A          717 SGPIPEMGQFETFPPAKFLNNPGL  740 (768)
T ss_dssp             EEECCSSSSGGGSCGGGGCSCTEE
T ss_pred             cccCCCchhhccCCHHHhcCCchh
Confidence            566765433332333344444433

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.01  E-value=1.9e-05  Score=67.78  Aligned_cols=75  Identities=15%  Similarity=0.193  Sum_probs=46.9

Q ss_pred             CeecCCCCCccchhhcCCCCCCEEEccCCCc-cCCc-ccccCCc---cccccccccCcCCC--C--CCCCcEEecCCCCC
Q 020571            1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPE-LPVLLSH---IEARNCKQLQSLPE--L--PSCPEELDTSILES   71 (324)
Q Consensus         1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~-~i~~L~~---L~l~~C~~L~~lP~--l--p~sL~~L~~~~C~s   71 (324)
                      |+|++|+|..+|..+..+++|+.|+|++|.+ .+|. .+..|++   |+|+++ ++..+|.  +  .++|+.|+++++ .
T Consensus        36 L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N-~l~~i~~~~f~~l~~L~~L~L~~N-~  113 (193)
T 2wfh_A           36 LYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN-RLRCIPPRTFDGLKSLRLLSLHGN-D  113 (193)
T ss_dssp             EECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCSS-C
T ss_pred             EECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC-ccCEeCHHHhCCCCCCCEEECCCC-C
Confidence            3566667777777777777777777777777 6653 4555555   777663 4555553  2  256777777764 4


Q ss_pred             CCccCC
Q 020571           72 LSKHFR   77 (324)
Q Consensus        72 L~~~~~   77 (324)
                      +..++.
T Consensus       114 l~~~~~  119 (193)
T 2wfh_A          114 ISVVPE  119 (193)
T ss_dssp             CCBCCT
T ss_pred             CCeeCh
Confidence            555554

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=97.99  E-value=1.7e-05  Score=69.76  Aligned_cols=73  Identities=27%  Similarity=0.260  Sum_probs=31.7

Q ss_pred             eecCCCCCcc-chhhcCCCCCCEEEccCCCc-cCCcc-cccCCc---cccccccccCcCCC----CCCCCcEEecCCCCC
Q 020571            2 NLVENKLESL-PASIGCLSSLEFLHLTRNNL-SLPEL-PVLLSH---IEARNCKQLQSLPE----LPSCPEELDTSILES   71 (324)
Q Consensus         2 ~L~~~~l~~l-P~~i~~l~~L~~L~L~~n~~-~lP~~-i~~L~~---L~l~~C~~L~~lP~----lp~sL~~L~~~~C~s   71 (324)
                      +|++|+|..+ |..++.+++|+.|+|++|.+ .+|.. +..+++   |+|+++ ++..+|.    -.++|+.|+++++ .
T Consensus        46 ~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N-~  123 (229)
T 3e6j_A           46 YLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN-QLTVLPSAVFDRLVHLKELFMCCN-K  123 (229)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-C
T ss_pred             EcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC-cCCccChhHhCcchhhCeEeccCC-c
Confidence            4444444443 33344455555555555555 44432 233333   445442 3344432    1244455555442 3


Q ss_pred             CCccC
Q 020571           72 LSKHF   76 (324)
Q Consensus        72 L~~~~   76 (324)
                      |..+|
T Consensus       124 l~~lp  128 (229)
T 3e6j_A          124 LTELP  128 (229)
T ss_dssp             CCSCC
T ss_pred             ccccC
Confidence            44443

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=97.98  E-value=5.5e-06  Score=71.02  Aligned_cols=91  Identities=13%  Similarity=0.071  Sum_probs=57.8

Q ss_pred             CeecCCCCCccchhhcCCCCCCEEEccCCCc-c-CCcccccCCc---cccccccccCcCCC---CCCCCcEEecCCCCCC
Q 020571            1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-S-LPELPVLLSH---IEARNCKQLQSLPE---LPSCPEELDTSILESL   72 (324)
Q Consensus         1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~-lP~~i~~L~~---L~l~~C~~L~~lP~---lp~sL~~L~~~~C~sL   72 (324)
                      |+|++|.+..++ .+..+++|++|+|++|.+ . .|..+..+++   |+|++|.--...|.   -.++|+.|++++|..+
T Consensus        71 L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i  149 (197)
T 4ezg_A           71 LTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAI  149 (197)
T ss_dssp             EEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBC
T ss_pred             EEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCc
Confidence            467777776665 677788888888888887 3 6777777666   77777544332332   2357788888877656


Q ss_pred             CccCCCCCcccccceeccCC
Q 020571           73 SKHFRPTASRKLTYFMFTNC   92 (324)
Q Consensus        73 ~~~~~~~~~~~~~~l~~~nC   92 (324)
                      ..++.-....++..|++.+|
T Consensus       150 ~~~~~l~~l~~L~~L~l~~n  169 (197)
T 4ezg_A          150 TDIMPLKTLPELKSLNIQFD  169 (197)
T ss_dssp             CCCGGGGGCSSCCEEECTTB
T ss_pred             cccHhhcCCCCCCEEECCCC
Confidence            66653222344556666554

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=97.98  E-value=1.6e-05  Score=77.44  Aligned_cols=46  Identities=37%  Similarity=0.599  Sum_probs=29.3

Q ss_pred             CeecCCCCCccchhhcCCCCCCEEEccCCCc-cCCcccccCCcccccc
Q 020571            1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSHIEARN   47 (324)
Q Consensus         1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~L~l~~   47 (324)
                      |+|++|.++.+| +++.+++|++|++++|.+ .+|..+.+|..|++++
T Consensus       136 L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~lp~~~~~L~~L~L~~  182 (454)
T 1jl5_A          136 LGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGN  182 (454)
T ss_dssp             EECCSSCCSSCC-CCTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCS
T ss_pred             EECcCCCCCCCc-ccCCCCCCCEEECCCCcCcccCCCcccccEEECcC
Confidence            356667777777 477777777777777777 7666555444444443

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=97.97  E-value=1.4e-05  Score=78.62  Aligned_cols=88  Identities=19%  Similarity=0.257  Sum_probs=67.4

Q ss_pred             CeecCCCCCccch---hhcCCCCCCEEEccCCCc-cCCcccccCCc---cccccccccCcCCC-CCCCCcEEecCCCCCC
Q 020571            1 MNLVENKLESLPA---SIGCLSSLEFLHLTRNNL-SLPELPVLLSH---IEARNCKQLQSLPE-LPSCPEELDTSILESL   72 (324)
Q Consensus         1 ~~L~~~~l~~lP~---~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~---L~l~~C~~L~~lP~-lp~sL~~L~~~~C~sL   72 (324)
                      |+|++|.|+.+|.   .++.+++|+.|+|++|++ .+|..+..+++   |+|++|+ +..+|. +|++|+.|++++| .|
T Consensus       366 L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~Ls~N-~l  443 (549)
T 2z81_A          366 LVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTG-IRVVKTCIPQTLEVLDVSNN-NL  443 (549)
T ss_dssp             EECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSC-CSCCCTTSCTTCSEEECCSS-CC
T ss_pred             EEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCCCC-cccccchhcCCceEEECCCC-Ch
Confidence            5788999988763   588999999999999999 99998877766   9999865 677764 4678999999887 56


Q ss_pred             CccCCCCCcccccceeccCC
Q 020571           73 SKHFRPTASRKLTYFMFTNC   92 (324)
Q Consensus        73 ~~~~~~~~~~~~~~l~~~nC   92 (324)
                      ..++.  ....+..|++++|
T Consensus       444 ~~~~~--~l~~L~~L~Ls~N  461 (549)
T 2z81_A          444 DSFSL--FLPRLQELYISRN  461 (549)
T ss_dssp             SCCCC--CCTTCCEEECCSS
T ss_pred             hhhcc--cCChhcEEECCCC
Confidence            55542  2344566777666

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=97.96  E-value=6.9e-06  Score=84.83  Aligned_cols=69  Identities=29%  Similarity=0.214  Sum_probs=61.4

Q ss_pred             CeecCCCCCccchhhcCCCCCCEEEccCCCc-cCCcccccCCc---cccccccccCcCCCC---CCCCcEEecCCCC
Q 020571            1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSH---IEARNCKQLQSLPEL---PSCPEELDTSILE   70 (324)
Q Consensus         1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~---L~l~~C~~L~~lP~l---p~sL~~L~~~~C~   70 (324)
                      |+|++|.|+.||..|+.|++|++|+|++|.| .||.+|++|++   |+|++| .+..||.-   ..+|+.|++.++.
T Consensus       252 L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~~N~  327 (727)
T 4b8c_D          252 LYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGNP  327 (727)
T ss_dssp             CBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSS-CCCCCCSSTTSCTTCCCEECTTSC
T ss_pred             EEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCC-CCCccChhhhcCCCccEEeCCCCc
Confidence            6899999999999999999999999999999 99999999887   999986 67888863   2689999999864

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=97.96  E-value=2.2e-05  Score=66.26  Aligned_cols=87  Identities=24%  Similarity=0.238  Sum_probs=67.5

Q ss_pred             CeecCCCCCccchhhcCCCCCCEEEccCCCc-cC-CcccccCCc---cccccccccCcCCCC----CCCCcEEecCCCCC
Q 020571            1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-SL-PELPVLLSH---IEARNCKQLQSLPEL----PSCPEELDTSILES   71 (324)
Q Consensus         1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~l-P~~i~~L~~---L~l~~C~~L~~lP~l----p~sL~~L~~~~C~s   71 (324)
                      ++++++.|.++|..+.  ++|+.|+|++|.+ .+ |..+.++++   |+|+++ +|..+|.-    .++|+.|+++++ .
T Consensus        17 l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N-~   92 (174)
T 2r9u_A           17 VNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDN-H   92 (174)
T ss_dssp             EECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-C
T ss_pred             EEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCC-c
Confidence            4788899999999875  8999999999999 77 557777776   999984 78888852    378999999985 6


Q ss_pred             CCccCCC-CC-cccccceeccC
Q 020571           72 LSKHFRP-TA-SRKLTYFMFTN   91 (324)
Q Consensus        72 L~~~~~~-~~-~~~~~~l~~~n   91 (324)
                      |..++.. +. ..++..|.+.+
T Consensus        93 l~~l~~~~~~~l~~L~~L~L~~  114 (174)
T 2r9u_A           93 LKSIPRGAFDNLKSLTHIYLYN  114 (174)
T ss_dssp             CCCCCTTTTTTCTTCSEEECCS
T ss_pred             cceeCHHHhccccCCCEEEeCC
Confidence            7777764 32 34556666654

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=97.96  E-value=6.9e-06  Score=66.91  Aligned_cols=90  Identities=20%  Similarity=0.189  Sum_probs=68.3

Q ss_pred             CeecCCCCC--ccchhhcCCCCCCEEEccCCCc-cCCcccccCCc---cccccccccCcCCCC---CCCCcEEecCCCCC
Q 020571            1 MNLVENKLE--SLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSH---IEARNCKQLQSLPEL---PSCPEELDTSILES   71 (324)
Q Consensus         1 ~~L~~~~l~--~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~---L~l~~C~~L~~lP~l---p~sL~~L~~~~C~s   71 (324)
                      +++++|.+.  .+|..++.+++|+.|+|++|.+ .+ ..+.++++   |+|++|.--..+|..   .++|+.|++++|. 
T Consensus        22 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~-   99 (149)
T 2je0_A           22 LVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNK-   99 (149)
T ss_dssp             EECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSC-
T ss_pred             EEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCc-
Confidence            478899998  8999889999999999999999 88 66777776   999986644447754   4789999999974 


Q ss_pred             CCccC--CCC-CcccccceeccCC
Q 020571           72 LSKHF--RPT-ASRKLTYFMFTNC   92 (324)
Q Consensus        72 L~~~~--~~~-~~~~~~~l~~~nC   92 (324)
                      +..++  ..+ ...++..|++++|
T Consensus       100 i~~~~~~~~~~~l~~L~~L~l~~N  123 (149)
T 2je0_A          100 IKDLSTIEPLKKLENLKSLDLFNC  123 (149)
T ss_dssp             CCSHHHHGGGGGCTTCCEEECTTC
T ss_pred             CCChHHHHHHhhCCCCCEEeCcCC
Confidence            66553  222 2244566777665

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=97.95  E-value=6.4e-06  Score=68.51  Aligned_cols=90  Identities=22%  Similarity=0.185  Sum_probs=68.4

Q ss_pred             CeecCCCCC--ccchhhcCCCCCCEEEccCCCc-cCCcccccCCc---cccccccccCcCCCC---CCCCcEEecCCCCC
Q 020571            1 MNLVENKLE--SLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSH---IEARNCKQLQSLPEL---PSCPEELDTSILES   71 (324)
Q Consensus         1 ~~L~~~~l~--~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~---L~l~~C~~L~~lP~l---p~sL~~L~~~~C~s   71 (324)
                      |+|++|.|.  .+|..+..+++|+.|+|++|.+ .+ ..+..+++   |+|++|.--..+|.+   .++|+.|++++| .
T Consensus        29 L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~  106 (168)
T 2ell_A           29 LVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGN-K  106 (168)
T ss_dssp             EECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSS-S
T ss_pred             EECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCC-c
Confidence            578899998  8999889999999999999999 88 66877776   999987644446654   478999999997 6


Q ss_pred             CCccCC--CC-CcccccceeccCC
Q 020571           72 LSKHFR--PT-ASRKLTYFMFTNC   92 (324)
Q Consensus        72 L~~~~~--~~-~~~~~~~l~~~nC   92 (324)
                      +..++.  .+ ...++..|++.+|
T Consensus       107 l~~~~~~~~l~~l~~L~~L~l~~N  130 (168)
T 2ell_A          107 LKDISTLEPLKKLECLKSLDLFNC  130 (168)
T ss_dssp             CCSSGGGGGGSSCSCCCEEECCSS
T ss_pred             cCcchhHHHHhcCCCCCEEEeeCC
Confidence            776652  22 2244556777665

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=97.94  E-value=1.2e-05  Score=70.81  Aligned_cols=90  Identities=20%  Similarity=0.195  Sum_probs=38.3

Q ss_pred             eecCC-CCCccchh-hcCCCCCC-EEEccCCCc-cCCcccccCCc---cccccccccCcCCCC----C-CCCcEEecCCC
Q 020571            2 NLVEN-KLESLPAS-IGCLSSLE-FLHLTRNNL-SLPELPVLLSH---IEARNCKQLQSLPEL----P-SCPEELDTSIL   69 (324)
Q Consensus         2 ~L~~~-~l~~lP~~-i~~l~~L~-~L~L~~n~~-~lP~~i~~L~~---L~l~~C~~L~~lP~l----p-~sL~~L~~~~C   69 (324)
                      +|++| .|..+|.. +..+++|+ .|+|++|.+ .+|..+...++   |+|++++.+..+|.-    . ++|+.|++++ 
T Consensus       136 ~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~-  214 (239)
T 2xwt_C          136 EITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ-  214 (239)
T ss_dssp             EEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTT-
T ss_pred             ECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCC-
Confidence            34444 44444432 44455555 555555555 55543322222   555554444444321    1 3455555554 


Q ss_pred             CCCCccCCCCCcccccceeccCCc
Q 020571           70 ESLSKHFRPTASRKLTYFMFTNCL   93 (324)
Q Consensus        70 ~sL~~~~~~~~~~~~~~l~~~nC~   93 (324)
                      ..+..+|.. ....+..|.+.++.
T Consensus       215 N~l~~l~~~-~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          215 TSVTALPSK-GLEHLKELIARNTW  237 (239)
T ss_dssp             CCCCCCCCT-TCTTCSEEECTTC-
T ss_pred             CccccCChh-HhccCceeeccCcc
Confidence            234444433 22233344444443

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=97.94  E-value=1.3e-05  Score=81.32  Aligned_cols=73  Identities=36%  Similarity=0.443  Sum_probs=45.5

Q ss_pred             CeecCCCCCccchhhcCCCCCCEEEccCCCc-cCCcccccCCccccccccccCcCCCCCCCCcEEecCCCCCCCccCC
Q 020571            1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSHIEARNCKQLQSLPELPSCPEELDTSILESLSKHFR   77 (324)
Q Consensus         1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~L~l~~C~~L~~lP~lp~sL~~L~~~~C~sL~~~~~   77 (324)
                      +++++++|+.+|..+.  ++|+.|+|++|++ .||..+.+|..|+|++| ++.++|..+++|+.|++++| .+..++.
T Consensus        45 L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~~l~~L~~L~Ls~N-~l~~lp~~l~~L~~L~Ls~N-~l~~l~~  118 (622)
T 3g06_A           45 LNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPALPPELRTLEVSGN-QLTSLPVLPPGLLELSIFSN-PLTHLPA  118 (622)
T ss_dssp             EECCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCCCCTTCCEEEECSC-CCSCCCCCCTTCCEEEECSC-CCCCCCC
T ss_pred             EEecCCCcCccChhhC--CCCcEEEecCCCCCCCCCcCCCCCEEEcCCC-cCCcCCCCCCCCCEEECcCC-cCCCCCC
Confidence            3566677777776665  6677777777777 77765555544666664 35666666666666666654 3444443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=97.94  E-value=1.5e-05  Score=76.98  Aligned_cols=76  Identities=26%  Similarity=0.288  Sum_probs=42.7

Q ss_pred             CeecCCCCCccc-hhhcCCCCCCEEEccCCCc-cCCcc-cccCCc---cccccccccCcCCCC----CCCCcEEecCCCC
Q 020571            1 MNLVENKLESLP-ASIGCLSSLEFLHLTRNNL-SLPEL-PVLLSH---IEARNCKQLQSLPEL----PSCPEELDTSILE   70 (324)
Q Consensus         1 ~~L~~~~l~~lP-~~i~~l~~L~~L~L~~n~~-~lP~~-i~~L~~---L~l~~C~~L~~lP~l----p~sL~~L~~~~C~   70 (324)
                      |+|++|.|..++ ..+..+++|++|+|++|.+ .+|.. +..+++   |+|+++ .+..+|.-    .++|+.|++.+|.
T Consensus       104 L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~~~  182 (452)
T 3zyi_A          104 LQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNN-PIESIPSYAFNRVPSLMRLDLGELK  182 (452)
T ss_dssp             EECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCT
T ss_pred             EECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCC-CcceeCHhHHhcCCcccEEeCCCCC
Confidence            356666666554 4566667777777777766 66543 444444   666653 34444431    2455666666555


Q ss_pred             CCCccCC
Q 020571           71 SLSKHFR   77 (324)
Q Consensus        71 sL~~~~~   77 (324)
                      .++.++.
T Consensus       183 ~l~~i~~  189 (452)
T 3zyi_A          183 KLEYISE  189 (452)
T ss_dssp             TCCEECT
T ss_pred             CccccCh
Confidence            5555543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=97.92  E-value=2.3e-05  Score=79.43  Aligned_cols=93  Identities=19%  Similarity=0.242  Sum_probs=73.1

Q ss_pred             CeecCCCCCccchhhc--CCCCCCEEEccCCCc-cCCcccccCCc---cccc------cccccCcCCCC---CCCCcEEe
Q 020571            1 MNLVENKLESLPASIG--CLSSLEFLHLTRNNL-SLPELPVLLSH---IEAR------NCKQLQSLPEL---PSCPEELD   65 (324)
Q Consensus         1 ~~L~~~~l~~lP~~i~--~l~~L~~L~L~~n~~-~lP~~i~~L~~---L~l~------~C~~L~~lP~l---p~sL~~L~   65 (324)
                      |+|++|.|..+|..+.  .+++|+.|+|++|.+ .+|..+.++++   |+|+      +++....+|.-   .++|+.|+
T Consensus       493 L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~  572 (636)
T 4eco_A          493 IDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQ  572 (636)
T ss_dssp             EECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEE
T ss_pred             EECcCCcCCccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEE
Confidence            4788899999999987  899999999999999 99999988887   8884      44556677753   37899999


Q ss_pred             cCCCCCCCccCCCCCcccccceeccCCccc
Q 020571           66 TSILESLSKHFRPTASRKLTYFMFTNCLKL   95 (324)
Q Consensus        66 ~~~C~sL~~~~~~~~~~~~~~l~~~nC~~L   95 (324)
                      +++|. +..+|..+. ..+..|++++|.-.
T Consensus       573 Ls~N~-l~~ip~~~~-~~L~~L~Ls~N~l~  600 (636)
T 4eco_A          573 IGSND-IRKVNEKIT-PNISVLDIKDNPNI  600 (636)
T ss_dssp             CCSSC-CCBCCSCCC-TTCCEEECCSCTTC
T ss_pred             CCCCc-CCccCHhHh-CcCCEEECcCCCCc
Confidence            99974 588887654 56777888776433

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=97.92  E-value=2e-05  Score=80.08  Aligned_cols=85  Identities=29%  Similarity=0.284  Sum_probs=59.9

Q ss_pred             CeecCCCCCccchhhcCCCCCCEEEccCCCc-cCCcccccCCccccccccccCcCCCCCCCCcEEecCCCCCCCccCCCC
Q 020571            1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSHIEARNCKQLQSLPELPSCPEELDTSILESLSKHFRPT   79 (324)
Q Consensus         1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~L~l~~C~~L~~lP~lp~sL~~L~~~~C~sL~~~~~~~   79 (324)
                      |+|++|+|+.||.   .+++|++|+|++|++ .||..+.+|..|+|++ .++..+|..+++|+.|++.++ .|..+|...
T Consensus        66 L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~-N~l~~l~~~l~~L~~L~L~~N-~l~~lp~~l  140 (622)
T 3g06_A           66 LVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPVLPPGLLELSIFS-NPLTHLPALPSGLCKLWIFGN-QLTSLPVLP  140 (622)
T ss_dssp             EEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCCCCTTCCEEEECS-CCCCCCCCCCTTCCEEECCSS-CCSCCCCCC
T ss_pred             EEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCCCCCCCCEEECcC-CcCCCCCCCCCCcCEEECCCC-CCCcCCCCC
Confidence            4678888888886   567888888888888 8887666666677776 356777777777888877775 466665533


Q ss_pred             CcccccceeccCC
Q 020571           80 ASRKLTYFMFTNC   92 (324)
Q Consensus        80 ~~~~~~~l~~~nC   92 (324)
                        .++..|++++|
T Consensus       141 --~~L~~L~Ls~N  151 (622)
T 3g06_A          141 --PGLQELSVSDN  151 (622)
T ss_dssp             --TTCCEEECCSS
T ss_pred             --CCCCEEECcCC
Confidence              34455666554

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=97.91  E-value=1.8e-05  Score=76.18  Aligned_cols=75  Identities=28%  Similarity=0.387  Sum_probs=38.4

Q ss_pred             CeecCCCCCccc-hhhcCCCCCCEEEccCCCc-cCCc-ccccCCc---cccccccccCcCCCC----CCCCcEEecCCCC
Q 020571            1 MNLVENKLESLP-ASIGCLSSLEFLHLTRNNL-SLPE-LPVLLSH---IEARNCKQLQSLPEL----PSCPEELDTSILE   70 (324)
Q Consensus         1 ~~L~~~~l~~lP-~~i~~l~~L~~L~L~~n~~-~lP~-~i~~L~~---L~l~~C~~L~~lP~l----p~sL~~L~~~~C~   70 (324)
                      |+|++|.|..++ ..+..+++|+.|+|++|++ .+|. .+..+++   |+|+++ .+..+|..    .++|+.|++.+|.
T Consensus        93 L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~l~~~~  171 (440)
T 3zyj_A           93 LQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNN-PIESIPSYAFNRIPSLRRLDLGELK  171 (440)
T ss_dssp             EECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCT
T ss_pred             EECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCC-cccccCHHHhhhCcccCEeCCCCCC
Confidence            355666666554 3455666666666666666 6654 3444443   555543 23344321    1445555555544


Q ss_pred             CCCccC
Q 020571           71 SLSKHF   76 (324)
Q Consensus        71 sL~~~~   76 (324)
                      .+..++
T Consensus       172 ~l~~i~  177 (440)
T 3zyj_A          172 RLSYIS  177 (440)
T ss_dssp             TCCEEC
T ss_pred             CcceeC
Confidence            444443

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=97.90  E-value=3.1e-05  Score=65.02  Aligned_cols=87  Identities=24%  Similarity=0.255  Sum_probs=66.6

Q ss_pred             CeecCCCCCccchhhcCCCCCCEEEccCCCc-cC-CcccccCCc---cccccccccCcCCCC----CCCCcEEecCCCCC
Q 020571            1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-SL-PELPVLLSH---IEARNCKQLQSLPEL----PSCPEELDTSILES   71 (324)
Q Consensus         1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~l-P~~i~~L~~---L~l~~C~~L~~lP~l----p~sL~~L~~~~C~s   71 (324)
                      ++++++.|+++|..+.  ++|+.|+|++|.+ .+ |..+.++++   |+|+++ ++..+|.-    .++|+.|+++++ .
T Consensus        14 l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N-~   89 (170)
T 3g39_A           14 VDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLNDN-Q   89 (170)
T ss_dssp             EECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-C
T ss_pred             EEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECCCC-c
Confidence            4788999999998774  8999999999999 87 556777776   999984 67788752    478999999985 6


Q ss_pred             CCccCCC-CC-cccccceeccC
Q 020571           72 LSKHFRP-TA-SRKLTYFMFTN   91 (324)
Q Consensus        72 L~~~~~~-~~-~~~~~~l~~~n   91 (324)
                      |..++.. +. ...+..|++.+
T Consensus        90 l~~~~~~~~~~l~~L~~L~L~~  111 (170)
T 3g39_A           90 LKSIPRGAFDNLKSLTHIWLLN  111 (170)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCS
T ss_pred             cCEeCHHHhcCCCCCCEEEeCC
Confidence            8887764 32 24555666644

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=97.89  E-value=2.6e-05  Score=82.19  Aligned_cols=93  Identities=20%  Similarity=0.224  Sum_probs=73.0

Q ss_pred             CeecCCCCCccchhhc--CCCCCCEEEccCCCc-cCCcccccCCc---ccccc------ccccCcCCCC---CCCCcEEe
Q 020571            1 MNLVENKLESLPASIG--CLSSLEFLHLTRNNL-SLPELPVLLSH---IEARN------CKQLQSLPEL---PSCPEELD   65 (324)
Q Consensus         1 ~~L~~~~l~~lP~~i~--~l~~L~~L~L~~n~~-~lP~~i~~L~~---L~l~~------C~~L~~lP~l---p~sL~~L~   65 (324)
                      |+|++|+|..+|..+.  .+++|+.|+|++|.+ .||.++..+++   |+|++      |.....+|..   .++|+.|+
T Consensus       733 L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~  812 (876)
T 4ecn_A          733 IDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQ  812 (876)
T ss_dssp             EECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEE
T ss_pred             EECCCCCCccchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEE
Confidence            4788888889999887  899999999999999 99988888877   87765      5556677743   37889999


Q ss_pred             cCCCCCCCccCCCCCcccccceeccCCccc
Q 020571           66 TSILESLSKHFRPTASRKLTYFMFTNCLKL   95 (324)
Q Consensus        66 ~~~C~sL~~~~~~~~~~~~~~l~~~nC~~L   95 (324)
                      +++|. +..+|..+. ..+..|++++|.-.
T Consensus       813 Ls~N~-L~~Ip~~l~-~~L~~LdLs~N~l~  840 (876)
T 4ecn_A          813 IGSND-IRKVDEKLT-PQLYILDIADNPNI  840 (876)
T ss_dssp             CCSSC-CCBCCSCCC-SSSCEEECCSCTTC
T ss_pred             CCCCC-CCccCHhhc-CCCCEEECCCCCCC
Confidence            99974 588887654 46778888887643

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=97.88  E-value=9.2e-06  Score=67.53  Aligned_cols=74  Identities=22%  Similarity=0.310  Sum_probs=58.9

Q ss_pred             CeecCCCCCccchhhcCCCCCCEEEccCCCc-c-CCcccccCCc---cccccccccCcCCC---C--CCCCcEEecCCCC
Q 020571            1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-S-LPELPVLLSH---IEARNCKQLQSLPE---L--PSCPEELDTSILE   70 (324)
Q Consensus         1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~-lP~~i~~L~~---L~l~~C~~L~~lP~---l--p~sL~~L~~~~C~   70 (324)
                      |+|++|.|..+ ..++.+++|++|+|++|.+ . +|..+..+++   |+|++| .+..+|.   +  .++|+.|++++| 
T Consensus        54 L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N-  130 (168)
T 2ell_A           54 LSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNC-  130 (168)
T ss_dssp             EEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSS-
T ss_pred             EeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCC-
Confidence            57899999988 7899999999999999999 7 8877766766   999986 6777663   2  368999999986 


Q ss_pred             CCCccCC
Q 020571           71 SLSKHFR   77 (324)
Q Consensus        71 sL~~~~~   77 (324)
                      .+..++.
T Consensus       131 ~l~~~~~  137 (168)
T 2ell_A          131 EVTNLND  137 (168)
T ss_dssp             GGGTSTT
T ss_pred             cCcchHH
Confidence            4555543

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=97.87  E-value=3.6e-05  Score=70.28  Aligned_cols=89  Identities=30%  Similarity=0.296  Sum_probs=51.0

Q ss_pred             CeecCCCCCccchhhcCCCCCCEEEccCCCc-cCCcccccCCc---cccccccccCcCCC--C--CCCCcEEecCCCCCC
Q 020571            1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSH---IEARNCKQLQSLPE--L--PSCPEELDTSILESL   72 (324)
Q Consensus         1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~---L~l~~C~~L~~lP~--l--p~sL~~L~~~~C~sL   72 (324)
                      |+|++|.|+.+|.. +.+++|+.|+|++|.+ .+|..+..+++   |+|+++ ++..+|.  +  .++|+.|+++++ .|
T Consensus        60 L~L~~n~l~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~N-~l  136 (290)
T 1p9a_G           60 LNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGN-EL  136 (290)
T ss_dssp             EECTTSCCCEEECC-SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTTS-CC
T ss_pred             EECCCCccCcccCC-CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCCC-CC
Confidence            35666777666654 6677777777777777 77766655554   666653 4555542  1  256677777664 45


Q ss_pred             CccCCCC--CcccccceeccCC
Q 020571           73 SKHFRPT--ASRKLTYFMFTNC   92 (324)
Q Consensus        73 ~~~~~~~--~~~~~~~l~~~nC   92 (324)
                      ..++...  ...++..|++.++
T Consensus       137 ~~~~~~~~~~l~~L~~L~L~~N  158 (290)
T 1p9a_G          137 KTLPPGLLTPTPKLEKLSLANN  158 (290)
T ss_dssp             CCCCTTTTTTCTTCCEEECTTS
T ss_pred             CccChhhcccccCCCEEECCCC
Confidence            5554432  1234445555443

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=97.87  E-value=1.9e-05  Score=78.37  Aligned_cols=74  Identities=24%  Similarity=0.219  Sum_probs=50.4

Q ss_pred             CeecCCCCCccch-hhcCCCCCCEEEccCCCc-cCCc-ccccCCc---cccccccccCcCCC----CCCCCcEEecCCCC
Q 020571            1 MNLVENKLESLPA-SIGCLSSLEFLHLTRNNL-SLPE-LPVLLSH---IEARNCKQLQSLPE----LPSCPEELDTSILE   70 (324)
Q Consensus         1 ~~L~~~~l~~lP~-~i~~l~~L~~L~L~~n~~-~lP~-~i~~L~~---L~l~~C~~L~~lP~----lp~sL~~L~~~~C~   70 (324)
                      |||++|+|+.+|. ++..+++|++|+|++|.+ .||. .|.+|++   |+|+++ +|+.+|.    -..+|+.|++.+| 
T Consensus        57 LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~f~~L~~L~~L~Ls~N-  134 (635)
T 4g8a_A           57 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVAVET-  134 (635)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECGGGGTTCTTCCEEECTTS-
T ss_pred             EEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC-cCCCCCHHHhcCCCCCCEEECCCC-
Confidence            4778888887764 577888888888888888 7765 4666665   777775 4666663    1356777777765 


Q ss_pred             CCCccC
Q 020571           71 SLSKHF   76 (324)
Q Consensus        71 sL~~~~   76 (324)
                      .|+.++
T Consensus       135 ~l~~l~  140 (635)
T 4g8a_A          135 NLASLE  140 (635)
T ss_dssp             CCCCST
T ss_pred             cCCCCC
Confidence            455554

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=97.86  E-value=2.6e-05  Score=78.36  Aligned_cols=84  Identities=33%  Similarity=0.440  Sum_probs=50.5

Q ss_pred             CeecCCCCCccchhhcCCCCCCEEEccCCCc-cCCcccc-cCCccccccccccCcCCCCCCCCcEEecCCCCCCCccCCC
Q 020571            1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPV-LLSHIEARNCKQLQSLPELPSCPEELDTSILESLSKHFRP   78 (324)
Q Consensus         1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~-~L~~L~l~~C~~L~~lP~lp~sL~~L~~~~C~sL~~~~~~   78 (324)
                      |+|++|+|+.+|   +.+++|+.|+|++|++ .||. +. +|..|+|+++ ++..+|..+++|+.|+++++ .|..+|. 
T Consensus        85 L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~~L~~L~Ls~N-~l~~lp~~l~~L~~L~Ls~N-~l~~lp~-  157 (571)
T 3cvr_A           85 LEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPASLKHLDVDNN-QLTMLPELPALLEYINADNN-QLTMLPE-  157 (571)
T ss_dssp             EECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSS-CCSCCCC-
T ss_pred             EECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhcCCCEEECCCC-cCCCCCCcCccccEEeCCCC-ccCcCCC-
Confidence            467777777777   4467777777777777 7776 54 3333666653 45556665566666666664 3555554 


Q ss_pred             CCcccccceeccCC
Q 020571           79 TASRKLTYFMFTNC   92 (324)
Q Consensus        79 ~~~~~~~~l~~~nC   92 (324)
                       ....+..|++++|
T Consensus       158 -~l~~L~~L~Ls~N  170 (571)
T 3cvr_A          158 -LPTSLEVLSVRNN  170 (571)
T ss_dssp             -CCTTCCEEECCSS
T ss_pred             -cCCCcCEEECCCC
Confidence             2233444555444

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=97.86  E-value=2.1e-05  Score=72.42  Aligned_cols=87  Identities=14%  Similarity=0.192  Sum_probs=51.9

Q ss_pred             CeecCCCCCccchhhcCCCCCCEEEccCCCc-cCCcccccCCc---cccccccccCcCCCCC--CCCcEEecCCCCCCCc
Q 020571            1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSH---IEARNCKQLQSLPELP--SCPEELDTSILESLSK   74 (324)
Q Consensus         1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~---L~l~~C~~L~~lP~lp--~sL~~L~~~~C~sL~~   74 (324)
                      |++++|.+..+| .+..+++|+.|+|++|.+ .+|. +..+++   |+|++|+ +..+|.+.  ++|+.|++++| .+..
T Consensus        46 L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~l~~n-~l~~  121 (308)
T 1h6u_A           46 LSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP-LKNVSAIAGLQSIKTLDLTST-QITD  121 (308)
T ss_dssp             EECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC-CSCCGGGTTCTTCCEEECTTS-CCCC
T ss_pred             EEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCc-CCCchhhcCCCCCCEEECCCC-CCCC
Confidence            356677777776 577777777777777777 7776 666655   7777653 55555432  56677777665 3444


Q ss_pred             cCCCCCcccccceeccC
Q 020571           75 HFRPTASRKLTYFMFTN   91 (324)
Q Consensus        75 ~~~~~~~~~~~~l~~~n   91 (324)
                      ++.-....++..|++.+
T Consensus       122 ~~~l~~l~~L~~L~l~~  138 (308)
T 1h6u_A          122 VTPLAGLSNLQVLYLDL  138 (308)
T ss_dssp             CGGGTTCTTCCEEECCS
T ss_pred             chhhcCCCCCCEEECCC
Confidence            44222223334444443

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=97.86  E-value=3.3e-05  Score=67.58  Aligned_cols=66  Identities=18%  Similarity=0.258  Sum_probs=28.6

Q ss_pred             eecCCCCCccch-hhcCCCCCCEEEccCCCc-cC-CcccccCCc---cccccccccCcCCCC----CCCCcEEecCC
Q 020571            2 NLVENKLESLPA-SIGCLSSLEFLHLTRNNL-SL-PELPVLLSH---IEARNCKQLQSLPEL----PSCPEELDTSI   68 (324)
Q Consensus         2 ~L~~~~l~~lP~-~i~~l~~L~~L~L~~n~~-~l-P~~i~~L~~---L~l~~C~~L~~lP~l----p~sL~~L~~~~   68 (324)
                      +|++|+|..+|. .+..+++|+.|+|++|.+ .+ |..+..+++   |+|++ .++..+|.-    .++|+.|++++
T Consensus        38 ~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~  113 (220)
T 2v9t_B           38 RLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG-NKITELPKSLFEGLFSLQLLLLNA  113 (220)
T ss_dssp             ECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             ECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC-CcCCccCHhHccCCCCCCEEECCC
Confidence            344444444433 344444555555555554 33 334444443   44444 233444421    13444555444

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=97.86  E-value=1.4e-05  Score=70.24  Aligned_cols=76  Identities=21%  Similarity=0.220  Sum_probs=54.4

Q ss_pred             CeecCCCCCccch-hhcCCCCCCEEEccCCC-c-cCCc-ccccCCc---cccccccccCcCCCC----CCCCcEEecCCC
Q 020571            1 MNLVENKLESLPA-SIGCLSSLEFLHLTRNN-L-SLPE-LPVLLSH---IEARNCKQLQSLPEL----PSCPEELDTSIL   69 (324)
Q Consensus         1 ~~L~~~~l~~lP~-~i~~l~~L~~L~L~~n~-~-~lP~-~i~~L~~---L~l~~C~~L~~lP~l----p~sL~~L~~~~C   69 (324)
                      |+|++|+|+.+|. .++.+++|+.|+|++|+ + .+|. .+..+++   |+|++|.+++.+|.-    .++|+.|++.++
T Consensus        36 L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n  115 (239)
T 2xwt_C           36 LKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNT  115 (239)
T ss_dssp             EEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEE
T ss_pred             EEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCC
Confidence            4677888887776 57778888888888886 7 7775 5666655   888877778777742    367888888775


Q ss_pred             CCCCccCC
Q 020571           70 ESLSKHFR   77 (324)
Q Consensus        70 ~sL~~~~~   77 (324)
                       .+..+|.
T Consensus       116 -~l~~lp~  122 (239)
T 2xwt_C          116 -GLKMFPD  122 (239)
T ss_dssp             -CCCSCCC
T ss_pred             -CCccccc
Confidence             4555654

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=97.85  E-value=2.2e-05  Score=67.15  Aligned_cols=93  Identities=12%  Similarity=0.021  Sum_probs=66.1

Q ss_pred             CeecCCCCCccchhhcCCCCCCEEEccCCCc-cCCcccccCCc---cccccccccCcCC-CC--CCCCcEEecCCCCCCC
Q 020571            1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSH---IEARNCKQLQSLP-EL--PSCPEELDTSILESLS   73 (324)
Q Consensus         1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~---L~l~~C~~L~~lP-~l--p~sL~~L~~~~C~sL~   73 (324)
                      ++|++|.|..+| .+..+++|+.|+|++|.+ .+| .+..+++   |++++|+--...| .+  .++|+.|++++|.--.
T Consensus        49 L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~  126 (197)
T 4ezg_A           49 ITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDD  126 (197)
T ss_dssp             EEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBG
T ss_pred             EeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCc
Confidence            478899999999 799999999999999988 665 5777776   9999865433233 23  2689999999874322


Q ss_pred             ccCCCC-CcccccceeccCCccc
Q 020571           74 KHFRPT-ASRKLTYFMFTNCLKL   95 (324)
Q Consensus        74 ~~~~~~-~~~~~~~l~~~nC~~L   95 (324)
                      ..+..+ ....+..|++++|..+
T Consensus       127 ~~~~~l~~l~~L~~L~L~~n~~i  149 (197)
T 4ezg_A          127 SILTKINTLPKVNSIDLSYNGAI  149 (197)
T ss_dssp             GGHHHHTTCSSCCEEECCSCTBC
T ss_pred             HhHHHHhhCCCCCEEEccCCCCc
Confidence            223222 2345667888887644

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=97.85  E-value=1.2e-05  Score=74.16  Aligned_cols=92  Identities=15%  Similarity=0.174  Sum_probs=61.6

Q ss_pred             CeecC-CCCC-ccchhhcCCCCCCEEEccCCCc--cCCcccccCCc---cccccccccCcCCCC---CCCCcEEecCCCC
Q 020571            1 MNLVE-NKLE-SLPASIGCLSSLEFLHLTRNNL--SLPELPVLLSH---IEARNCKQLQSLPEL---PSCPEELDTSILE   70 (324)
Q Consensus         1 ~~L~~-~~l~-~lP~~i~~l~~L~~L~L~~n~~--~lP~~i~~L~~---L~l~~C~~L~~lP~l---p~sL~~L~~~~C~   70 (324)
                      |+|++ +++. .+|..++.+++|++|+|++|.+  .+|..+.++++   |+|+++.--..+|..   .++|+.|++.++.
T Consensus        81 L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~  160 (313)
T 1ogq_A           81 LYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR  160 (313)
T ss_dssp             EEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSC
T ss_pred             eeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCc
Confidence            45664 6665 6888888888888888888888  77877877776   888876655466642   3678888888764


Q ss_pred             CCCccCCCCCc-c-cccceeccCC
Q 020571           71 SLSKHFRPTAS-R-KLTYFMFTNC   92 (324)
Q Consensus        71 sL~~~~~~~~~-~-~~~~l~~~nC   92 (324)
                      --..+|..+.. . .+..|+++++
T Consensus       161 l~~~~p~~l~~l~~~L~~L~L~~N  184 (313)
T 1ogq_A          161 ISGAIPDSYGSFSKLFTSMTISRN  184 (313)
T ss_dssp             CEEECCGGGGCCCTTCCEEECCSS
T ss_pred             ccCcCCHHHhhhhhcCcEEECcCC
Confidence            32255544332 2 4456666554

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=97.85  E-value=2.7e-05  Score=65.79  Aligned_cols=68  Identities=21%  Similarity=0.282  Sum_probs=55.4

Q ss_pred             CeecCCCCCcc-chhhcCCCCCCEEEccCCCc-cCCccc-ccCCc---cccccccccCcCCCC----CCCCcEEecCCC
Q 020571            1 MNLVENKLESL-PASIGCLSSLEFLHLTRNNL-SLPELP-VLLSH---IEARNCKQLQSLPEL----PSCPEELDTSIL   69 (324)
Q Consensus         1 ~~L~~~~l~~l-P~~i~~l~~L~~L~L~~n~~-~lP~~i-~~L~~---L~l~~C~~L~~lP~l----p~sL~~L~~~~C   69 (324)
                      |+|++|.|..+ |..++.+++|+.|+|++|.+ .+|..+ .++++   |+|++ +++..+|.-    .++|+.|++.++
T Consensus        38 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~L~~L~L~~N  115 (174)
T 2r9u_A           38 LWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND-NHLKSIPRGAFDNLKSLTHIYLYNN  115 (174)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCSEEECCSS
T ss_pred             EEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC-CccceeCHHHhccccCCCEEEeCCC
Confidence            57899999987 56789999999999999999 999764 66666   99987 567777752    367888888774

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=97.85  E-value=2.9e-05  Score=78.11  Aligned_cols=85  Identities=35%  Similarity=0.487  Sum_probs=60.0

Q ss_pred             CeecCCCCCccchhhcCCCCCCEEEccCCCc-cCCcccccCCccccccccccCcCCCCCCCCcEEecCCCCCCCccCCCC
Q 020571            1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSHIEARNCKQLQSLPELPSCPEELDTSILESLSKHFRPT   79 (324)
Q Consensus         1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~L~l~~C~~L~~lP~lp~sL~~L~~~~C~sL~~~~~~~   79 (324)
                      |+|++|+|+.+|. ++.  +|+.|+|++|++ .||..+.+|..|+|+++ ++..+|..+++|+.|++++| .|..+|. +
T Consensus       105 L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N-~l~~lp~~l~~L~~L~Ls~N-~L~~lp~-l  178 (571)
T 3cvr_A          105 LDACDNRLSTLPE-LPA--SLKHLDVDNNQLTMLPELPALLEYINADNN-QLTMLPELPTSLEVLSVRNN-QLTFLPE-L  178 (571)
T ss_dssp             EECCSSCCSCCCC-CCT--TCCEEECCSSCCSCCCCCCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSS-CCSCCCC-C
T ss_pred             EEccCCCCCCcch-hhc--CCCEEECCCCcCCCCCCcCccccEEeCCCC-ccCcCCCcCCCcCEEECCCC-CCCCcch-h
Confidence            4678888888887 654  788888888888 88873344444888764 56678877788888888876 4666766 4


Q ss_pred             CcccccceeccCC
Q 020571           80 ASRKLTYFMFTNC   92 (324)
Q Consensus        80 ~~~~~~~l~~~nC   92 (324)
                      . ..+..|+++++
T Consensus       179 ~-~~L~~L~Ls~N  190 (571)
T 3cvr_A          179 P-ESLEALDVSTN  190 (571)
T ss_dssp             C-TTCCEEECCSS
T ss_pred             h-CCCCEEECcCC
Confidence            3 45666777665

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=97.83  E-value=5.1e-05  Score=68.23  Aligned_cols=89  Identities=27%  Similarity=0.280  Sum_probs=57.1

Q ss_pred             CeecCCCCCccchhhcCCCCCCEEEccCCCc-cCCcc-cccCCc---cccccccccCcCCC--C--CCCCcEEecCCCCC
Q 020571            1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPEL-PVLLSH---IEARNCKQLQSLPE--L--PSCPEELDTSILES   71 (324)
Q Consensus         1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~~-i~~L~~---L~l~~C~~L~~lP~--l--p~sL~~L~~~~C~s   71 (324)
                      |+|++|.+..++ .++.+++|++|+|++|.+ .+|.. +.++++   |+|++|+ +..+|.  +  .++|+.|++.+| .
T Consensus        68 L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~  144 (272)
T 3rfs_A           68 LALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQ-LQSLPDGVFDKLTNLTYLNLAHN-Q  144 (272)
T ss_dssp             EECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSS-C
T ss_pred             EECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCc-CCccCHHHhccCCCCCEEECCCC-c
Confidence            467777777765 677888888888888888 66654 455555   7777753 455543  2  367788888776 5


Q ss_pred             CCccCCCC--CcccccceeccCC
Q 020571           72 LSKHFRPT--ASRKLTYFMFTNC   92 (324)
Q Consensus        72 L~~~~~~~--~~~~~~~l~~~nC   92 (324)
                      +..++...  ....+..|++++|
T Consensus       145 l~~~~~~~~~~l~~L~~L~l~~n  167 (272)
T 3rfs_A          145 LQSLPKGVFDKLTNLTELDLSYN  167 (272)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cCccCHHHhccCccCCEEECCCC
Confidence            65555432  2344556666665

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=97.83  E-value=6.4e-05  Score=62.95  Aligned_cols=90  Identities=28%  Similarity=0.306  Sum_probs=56.3

Q ss_pred             CeecCCCCCccchh-hcCCCCCCEEEccCCCc-cCCcc-cccCCc---cccccccccCcCCC--C--CCCCcEEecCCCC
Q 020571            1 MNLVENKLESLPAS-IGCLSSLEFLHLTRNNL-SLPEL-PVLLSH---IEARNCKQLQSLPE--L--PSCPEELDTSILE   70 (324)
Q Consensus         1 ~~L~~~~l~~lP~~-i~~l~~L~~L~L~~n~~-~lP~~-i~~L~~---L~l~~C~~L~~lP~--l--p~sL~~L~~~~C~   70 (324)
                      ++|++|+|..+|.. ++.+++|+.|+|++|.+ .+|.. +..+++   |+|+++ ++..+|.  +  .++|+.|+++++ 
T Consensus        33 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N-  110 (177)
T 2o6r_A           33 LELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN-KLQSLPNGVFDKLTQLKELALDTN-  110 (177)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-
T ss_pred             EEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC-CccccCHHHhhCCcccCEEECcCC-
Confidence            35677777776654 46777888888888887 77654 455555   777764 4556654  2  267788888775 


Q ss_pred             CCCccCCCC-C-cccccceeccCC
Q 020571           71 SLSKHFRPT-A-SRKLTYFMFTNC   92 (324)
Q Consensus        71 sL~~~~~~~-~-~~~~~~l~~~nC   92 (324)
                      .+..++... . ...+..|.+.++
T Consensus       111 ~l~~~~~~~~~~l~~L~~L~l~~N  134 (177)
T 2o6r_A          111 QLKSVPDGIFDRLTSLQKIWLHTN  134 (177)
T ss_dssp             CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             cceEeCHHHhcCCcccCEEEecCC
Confidence            566666532 2 234555666543

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=97.81  E-value=4.5e-05  Score=65.17  Aligned_cols=89  Identities=20%  Similarity=0.220  Sum_probs=51.0

Q ss_pred             CeecCCCCCccchh--hcCCCCCCEEEccCCCc-cC-CcccccCCc---cccccccccCcCCC--C--CCCCcEEecCCC
Q 020571            1 MNLVENKLESLPAS--IGCLSSLEFLHLTRNNL-SL-PELPVLLSH---IEARNCKQLQSLPE--L--PSCPEELDTSIL   69 (324)
Q Consensus         1 ~~L~~~~l~~lP~~--i~~l~~L~~L~L~~n~~-~l-P~~i~~L~~---L~l~~C~~L~~lP~--l--p~sL~~L~~~~C   69 (324)
                      |+|++|+|..+|..  ++.+++|+.|+|++|.+ .+ |..+..+++   |+|+++ ++..++.  +  .++|+.|+++++
T Consensus        34 L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N  112 (192)
T 1w8a_A           34 LLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN-KIKEISNKMFLGLHQLKTLNLYDN  112 (192)
T ss_dssp             EECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC-CCCEECSSSSTTCTTCCEEECCSS
T ss_pred             EECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC-cCCccCHHHhcCCCCCCEEECCCC
Confidence            35666666666653  66777777777777777 55 556666655   777763 3444442  2  266777777774


Q ss_pred             CCCCcc-CCCCC-cccccceeccC
Q 020571           70 ESLSKH-FRPTA-SRKLTYFMFTN   91 (324)
Q Consensus        70 ~sL~~~-~~~~~-~~~~~~l~~~n   91 (324)
                       .+..+ +..+. ...+..|++.+
T Consensus       113 -~l~~~~~~~~~~l~~L~~L~L~~  135 (192)
T 1w8a_A          113 -QISCVMPGSFEHLNSLTSLNLAS  135 (192)
T ss_dssp             -CCCEECTTSSTTCTTCCEEECTT
T ss_pred             -cCCeeCHHHhhcCCCCCEEEeCC
Confidence             44444 32222 23344555543

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=97.78  E-value=6.6e-05  Score=65.94  Aligned_cols=89  Identities=25%  Similarity=0.216  Sum_probs=67.3

Q ss_pred             CeecCCCCCccchh-hcCCCCCCEEEccCCCc-cCCcc-cccCCc---cccccccccCcCCCC---CCCCcEEecCCCCC
Q 020571            1 MNLVENKLESLPAS-IGCLSSLEFLHLTRNNL-SLPEL-PVLLSH---IEARNCKQLQSLPEL---PSCPEELDTSILES   71 (324)
Q Consensus         1 ~~L~~~~l~~lP~~-i~~l~~L~~L~L~~n~~-~lP~~-i~~L~~---L~l~~C~~L~~lP~l---p~sL~~L~~~~C~s   71 (324)
                      |+|++|.|..+|.. +..+++|+.|+|++|.+ .+|.. +..+++   |+|++ .++..+|.-   .++|+.|+++++ .
T Consensus        69 L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~-N~l~~lp~~~~~l~~L~~L~L~~N-~  146 (229)
T 3e6j_A           69 LYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCC-NKLTELPRGIERLTHLTHLALDQN-Q  146 (229)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCSCCTTGGGCTTCSEEECCSS-C
T ss_pred             EECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccC-CcccccCcccccCCCCCEEECCCC-c
Confidence            57899999999866 48899999999999999 88865 466666   99987 567788753   378999999985 6


Q ss_pred             CCccCCC-CC-cccccceeccC
Q 020571           72 LSKHFRP-TA-SRKLTYFMFTN   91 (324)
Q Consensus        72 L~~~~~~-~~-~~~~~~l~~~n   91 (324)
                      |..++.. +. ...+..|.+.+
T Consensus       147 l~~~~~~~~~~l~~L~~L~l~~  168 (229)
T 3e6j_A          147 LKSIPHGAFDRLSSLTHAYLFG  168 (229)
T ss_dssp             CCCCCTTTTTTCTTCCEEECTT
T ss_pred             CCccCHHHHhCCCCCCEEEeeC
Confidence            7777653 22 23455566643

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=97.78  E-value=3.4e-05  Score=70.92  Aligned_cols=88  Identities=17%  Similarity=0.257  Sum_probs=62.2

Q ss_pred             CeecCCCCCccchhhcCCCCCCEEEccCCCc-cCCcccccCCc---cccccccccCcCCCCC--CCCcEEecCCCCCCCc
Q 020571            1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSH---IEARNCKQLQSLPELP--SCPEELDTSILESLSK   74 (324)
Q Consensus         1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~---L~l~~C~~L~~lP~lp--~sL~~L~~~~C~sL~~   74 (324)
                      |+|++|.|..+|. ++.+++|+.|+|++|.+ .+| .+..+++   |+|++|. +..+|.+.  ++|+.|++++| .+..
T Consensus        68 L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n-~l~~  143 (308)
T 1h6u_A           68 LELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTSTQ-ITDVTPLAGLSNLQVLYLDLN-QITN  143 (308)
T ss_dssp             EECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTSC-CCCCGGGTTCTTCCEEECCSS-CCCC
T ss_pred             EEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCCCC-CCCchhhcCCCCCCEEECCCC-ccCc
Confidence            4788888988887 88999999999999999 887 4766666   8888754 56666443  67888888876 4555


Q ss_pred             cCCCCCcccccceeccCC
Q 020571           75 HFRPTASRKLTYFMFTNC   92 (324)
Q Consensus        75 ~~~~~~~~~~~~l~~~nC   92 (324)
                      ++.-....++..|++++|
T Consensus       144 ~~~l~~l~~L~~L~l~~n  161 (308)
T 1h6u_A          144 ISPLAGLTNLQYLSIGNA  161 (308)
T ss_dssp             CGGGGGCTTCCEEECCSS
T ss_pred             CccccCCCCccEEEccCC
Confidence            543222234556666555

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=97.78  E-value=5.5e-05  Score=73.63  Aligned_cols=87  Identities=33%  Similarity=0.326  Sum_probs=61.2

Q ss_pred             CeecCCCCCccchhhcCCCCCCEEEccCCCc-cCCcccccCCccccccccccCcCCCCCCCCcEEecCCCCCCCccCCCC
Q 020571            1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSHIEARNCKQLQSLPELPSCPEELDTSILESLSKHFRPT   79 (324)
Q Consensus         1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~L~l~~C~~L~~lP~lp~sL~~L~~~~C~sL~~~~~~~   79 (324)
                      +++++|+|+.+|..   .++|+.|+|++|.+ .+|..+.+|..|+++++ .+..+|.+|++|+.|++.+| .++.+|.-.
T Consensus        76 L~l~~~~l~~lp~~---~~~L~~L~l~~n~l~~lp~~~~~L~~L~l~~n-~l~~l~~~~~~L~~L~L~~n-~l~~lp~~~  150 (454)
T 1jl5_A           76 LELNNLGLSSLPEL---PPHLESLVASCNSLTELPELPQSLKSLLVDNN-NLKALSDLPPLLEYLGVSNN-QLEKLPELQ  150 (454)
T ss_dssp             EECTTSCCSCCCSC---CTTCSEEECCSSCCSSCCCCCTTCCEEECCSS-CCSCCCSCCTTCCEEECCSS-CCSSCCCCT
T ss_pred             EEecCCccccCCCC---cCCCCEEEccCCcCCccccccCCCcEEECCCC-ccCcccCCCCCCCEEECcCC-CCCCCcccC
Confidence            46778888888762   46888888888888 88887767766888774 67778888888888888876 566666322


Q ss_pred             CcccccceeccCC
Q 020571           80 ASRKLTYFMFTNC   92 (324)
Q Consensus        80 ~~~~~~~l~~~nC   92 (324)
                      ....+..|+++++
T Consensus       151 ~l~~L~~L~l~~N  163 (454)
T 1jl5_A          151 NSSFLKIIDVDNN  163 (454)
T ss_dssp             TCTTCCEEECCSS
T ss_pred             CCCCCCEEECCCC
Confidence            2234445555544

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=97.77  E-value=3.2e-05  Score=70.87  Aligned_cols=87  Identities=17%  Similarity=0.187  Sum_probs=49.7

Q ss_pred             CeecCCCCCccchh----hcCCCCCCEEEccCCCc-cC-CcccccCC---c---cccccccccCcCCC-CCCCCcEEecC
Q 020571            1 MNLVENKLESLPAS----IGCLSSLEFLHLTRNNL-SL-PELPVLLS---H---IEARNCKQLQSLPE-LPSCPEELDTS   67 (324)
Q Consensus         1 ~~L~~~~l~~lP~~----i~~l~~L~~L~L~~n~~-~l-P~~i~~L~---~---L~l~~C~~L~~lP~-lp~sL~~L~~~   67 (324)
                      |+|++|+|+.+|..    ++.+++|+.|+|++|.+ .+ |..+..+.   +   |+|++| ++..+|. ++++|+.|+++
T Consensus       202 L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~~~~L~~L~Ls  280 (310)
T 4glp_A          202 LALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFA-GLEQVPKGLPAKLRVLDLS  280 (310)
T ss_dssp             CBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSS-CCCSCCSCCCSCCSCEECC
T ss_pred             EECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCC-CCCchhhhhcCCCCEEECC
Confidence            45666666655542    35667777777777777 44 66665542   2   677653 4556664 45677777777


Q ss_pred             CCCCCCccCCCCCcccccceec
Q 020571           68 ILESLSKHFRPTASRKLTYFMF   89 (324)
Q Consensus        68 ~C~sL~~~~~~~~~~~~~~l~~   89 (324)
                      ++ .|..+|.......+..|++
T Consensus       281 ~N-~l~~~~~~~~l~~L~~L~L  301 (310)
T 4glp_A          281 SN-RLNRAPQPDELPEVDNLTL  301 (310)
T ss_dssp             SC-CCCSCCCTTSCCCCSCEEC
T ss_pred             CC-cCCCCchhhhCCCccEEEC
Confidence            64 4555544322233444444

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=97.77  E-value=3e-05  Score=70.80  Aligned_cols=88  Identities=16%  Similarity=0.144  Sum_probs=55.9

Q ss_pred             CeecCCCCCccchhhcCCCCCCEEEccCCCc-cCCcccccCCc---cccccccccCcCCCCC--CCCcEEecCCCCCCCc
Q 020571            1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSH---IEARNCKQLQSLPELP--SCPEELDTSILESLSK   74 (324)
Q Consensus         1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~---L~l~~C~~L~~lP~lp--~sL~~L~~~~C~sL~~   74 (324)
                      +++++|.+..+| .++.+++|+.|+|++|.+ .+|. +.++++   |+|+++ .+..+|.+.  ++|+.|++++| .+..
T Consensus        51 L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~L~~n-~i~~  126 (291)
T 1h6t_A           51 IIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDEN-KVKDLSSLKDLKKLKSLSLEHN-GISD  126 (291)
T ss_dssp             EECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCGGGGTTCTTCCEEECTTS-CCCC
T ss_pred             EEccCCCcccCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCC-cCCCChhhccCCCCCEEECCCC-cCCC
Confidence            356777777776 477788888888888888 7776 666665   777764 455566543  67777777775 4444


Q ss_pred             cCCCCCcccccceeccCC
Q 020571           75 HFRPTASRKLTYFMFTNC   92 (324)
Q Consensus        75 ~~~~~~~~~~~~l~~~nC   92 (324)
                      ++.-.....+..|++++|
T Consensus       127 ~~~l~~l~~L~~L~l~~n  144 (291)
T 1h6t_A          127 INGLVHLPQLESLYLGNN  144 (291)
T ss_dssp             CGGGGGCTTCCEEECCSS
T ss_pred             ChhhcCCCCCCEEEccCC
Confidence            432222234445555544

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=97.76  E-value=4.5e-05  Score=75.66  Aligned_cols=90  Identities=22%  Similarity=0.206  Sum_probs=66.2

Q ss_pred             CeecCCCCCccch-hhcCCCCCCEEEccCCCc-cCCc-ccccCCc---cccccccccCcCCCCC----CCCcEEecCCCC
Q 020571            1 MNLVENKLESLPA-SIGCLSSLEFLHLTRNNL-SLPE-LPVLLSH---IEARNCKQLQSLPELP----SCPEELDTSILE   70 (324)
Q Consensus         1 ~~L~~~~l~~lP~-~i~~l~~L~~L~L~~n~~-~lP~-~i~~L~~---L~l~~C~~L~~lP~lp----~sL~~L~~~~C~   70 (324)
                      |||++|+|..+|+ .++.+++|++|+|++|++ .+|. .+.+|++   |+|++| ++..+|..+    ++|+.|+++++ 
T Consensus        81 L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~~~~L~~L~~L~Ls~N-  158 (635)
T 4g8a_A           81 LDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHN-  158 (635)
T ss_dssp             EECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTS-CCCCSTTCCCTTCTTCCEEECCSS-
T ss_pred             EECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCC-cCCCCChhhhhcCcccCeeccccC-
Confidence            5899999999976 478999999999999999 9986 4677776   999985 677787532    78999999886 


Q ss_pred             CCCccCC--CCC-cccccceeccCC
Q 020571           71 SLSKHFR--PTA-SRKLTYFMFTNC   92 (324)
Q Consensus        71 sL~~~~~--~~~-~~~~~~l~~~nC   92 (324)
                      .+..++.  .+. ...+..|.+.++
T Consensus       159 ~l~~~~~~~~~~~l~~L~~L~L~~N  183 (635)
T 4g8a_A          159 LIQSFKLPEYFSNLTNLEHLDLSSN  183 (635)
T ss_dssp             CCCCCCCCGGGGGCTTCCEEECCSS
T ss_pred             ccccCCCchhhccchhhhhhcccCc
Confidence            4544332  221 234555666554

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=97.75  E-value=4.8e-05  Score=76.93  Aligned_cols=66  Identities=17%  Similarity=0.187  Sum_probs=41.0

Q ss_pred             CeecCCCCCccchhhcCCCCCCEEEccCCCc-cCCcccccCCc---cccccccccCcCCCCC--CCCcEEecCCC
Q 020571            1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSH---IEARNCKQLQSLPELP--SCPEELDTSIL   69 (324)
Q Consensus         1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~---L~l~~C~~L~~lP~lp--~sL~~L~~~~C   69 (324)
                      |+|++|.|..+| .++.+++|+.|+|++|.+ .+|. +..|++   |+|++| .+..+|.+.  ++|+.|++++|
T Consensus        48 L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~~l~~l~~L~~L~Ls~N  119 (605)
T 1m9s_A           48 IIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDEN-KIKDLSSLKDLKKLKSLSLEHN  119 (605)
T ss_dssp             CBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSS-CCCCCTTSTTCTTCCEEECTTS
T ss_pred             EECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCC-CCCCChhhccCCCCCEEEecCC
Confidence            456667776666 477777777777777777 6665 555554   666654 445555443  45666666554

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=97.75  E-value=8.7e-05  Score=63.58  Aligned_cols=87  Identities=18%  Similarity=0.166  Sum_probs=65.1

Q ss_pred             CeecCCCCCccchhhcCCCCCCEEEccCCCc-cCCcccccCCc---cccccccccCcCCC--C--CCCCcEEecCCCCCC
Q 020571            1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSH---IEARNCKQLQSLPE--L--PSCPEELDTSILESL   72 (324)
Q Consensus         1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~---L~l~~C~~L~~lP~--l--p~sL~~L~~~~C~sL   72 (324)
                      +++++++|+++|..+.  ++|+.|+|++|.+ .+|..+.++++   |+|++ ..+..++.  +  ..+|+.|+++++ .|
T Consensus        15 l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~-N~i~~i~~~~f~~l~~L~~L~Ls~N-~l   90 (193)
T 2wfh_A           15 VRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSN-NRISTLSNQSFSNMTQLLTLILSYN-RL   90 (193)
T ss_dssp             EECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSS-CC
T ss_pred             EEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCC-CcCCEeCHhHccCCCCCCEEECCCC-cc
Confidence            3678889999998764  6899999999999 99998988887   99998 45667764  2  378999999985 57


Q ss_pred             CccCCC-CC-cccccceeccC
Q 020571           73 SKHFRP-TA-SRKLTYFMFTN   91 (324)
Q Consensus        73 ~~~~~~-~~-~~~~~~l~~~n   91 (324)
                      ..++.. +. ...+..|++.+
T Consensus        91 ~~i~~~~f~~l~~L~~L~L~~  111 (193)
T 2wfh_A           91 RCIPPRTFDGLKSLRLLSLHG  111 (193)
T ss_dssp             CBCCTTTTTTCTTCCEEECCS
T ss_pred             CEeCHHHhCCCCCCCEEECCC
Confidence            777643 22 23444555543

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=97.75  E-value=4.7e-05  Score=63.84  Aligned_cols=68  Identities=25%  Similarity=0.322  Sum_probs=54.8

Q ss_pred             CeecCCCCCcc-chhhcCCCCCCEEEccCCCc-cCCcc-cccCCc---cccccccccCcCCC--C--CCCCcEEecCCC
Q 020571            1 MNLVENKLESL-PASIGCLSSLEFLHLTRNNL-SLPEL-PVLLSH---IEARNCKQLQSLPE--L--PSCPEELDTSIL   69 (324)
Q Consensus         1 ~~L~~~~l~~l-P~~i~~l~~L~~L~L~~n~~-~lP~~-i~~L~~---L~l~~C~~L~~lP~--l--p~sL~~L~~~~C   69 (324)
                      |+|++|.|..+ |..++.+++|++|+|++|.+ .+|.. +..+++   |+|++ +++..+|.  +  .++|+.|++.+.
T Consensus        35 L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N  112 (170)
T 3g39_A           35 LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND-NQLKSIPRGAFDNLKSLTHIWLLNN  112 (170)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             EEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC-CccCEeCHHHhcCCCCCCEEEeCCC
Confidence            57899999988 56789999999999999999 99875 467766   99998 46777775  2  367888888774

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=97.74  E-value=4.6e-05  Score=68.56  Aligned_cols=89  Identities=25%  Similarity=0.244  Sum_probs=65.3

Q ss_pred             CeecCCCCCccchhhcCCCCCCEEEccCCCc-cCCcccc-cCCccccccccccCcCCCCC--CCCcEEecCCCCCCCccC
Q 020571            1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPV-LLSHIEARNCKQLQSLPELP--SCPEELDTSILESLSKHF   76 (324)
Q Consensus         1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~-~L~~L~l~~C~~L~~lP~lp--~sL~~L~~~~C~sL~~~~   76 (324)
                      |+|++|.|..+|. ++.+++|+.|+|++|.+ .+|.... +|..|+|++| .+..+|.+.  ++|+.|+++++ .+..++
T Consensus        68 L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~~~~~~L~~L~L~~N-~l~~~~~l~~l~~L~~L~Ls~N-~i~~~~  144 (263)
T 1xeu_A           68 LHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNGIPSACLSRLFLDNN-ELRDTDSLIHLKNLEILSIRNN-KLKSIV  144 (263)
T ss_dssp             EECCSSCCCCCGG-GTTCSSCCEEECCSSCCSCCTTCCCSSCCEEECCSS-CCSBSGGGTTCTTCCEEECTTS-CCCBCG
T ss_pred             EECCCCccCCChh-hccCCCCCEEECCCCccCCcCccccCcccEEEccCC-ccCCChhhcCcccccEEECCCC-cCCCCh
Confidence            5789999999998 99999999999999999 9886433 2333999985 677777653  78999999986 566665


Q ss_pred             CCCCcccccceeccCC
Q 020571           77 RPTASRKLTYFMFTNC   92 (324)
Q Consensus        77 ~~~~~~~~~~l~~~nC   92 (324)
                      .-.....+..|++++|
T Consensus       145 ~l~~l~~L~~L~L~~N  160 (263)
T 1xeu_A          145 MLGFLSKLEVLDLHGN  160 (263)
T ss_dssp             GGGGCTTCCEEECTTS
T ss_pred             HHccCCCCCEEECCCC
Confidence            3222344455555543

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=97.72  E-value=0.00011  Score=64.27  Aligned_cols=68  Identities=18%  Similarity=0.154  Sum_probs=36.9

Q ss_pred             CeecCCCCCccch--hhcCCCCCCEEEccCCCc-cCCc-ccccCCc---cccccccccCcCCC--C--CCCCcEEecCCC
Q 020571            1 MNLVENKLESLPA--SIGCLSSLEFLHLTRNNL-SLPE-LPVLLSH---IEARNCKQLQSLPE--L--PSCPEELDTSIL   69 (324)
Q Consensus         1 ~~L~~~~l~~lP~--~i~~l~~L~~L~L~~n~~-~lP~-~i~~L~~---L~l~~C~~L~~lP~--l--p~sL~~L~~~~C   69 (324)
                      |+|++|+|..++.  .++.+++|+.|+|++|.+ .+|. .+..+++   |+|+++ .+..+|.  +  .++|+.|+++++
T Consensus        37 L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N  115 (220)
T 2v70_A           37 LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN-RLENVQHKMFKGLESLKTLMLRSN  115 (220)
T ss_dssp             EECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCGGGGTTCSSCCEEECTTS
T ss_pred             EEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC-ccCccCHhHhcCCcCCCEEECCCC
Confidence            3566666665532  256666666666666666 5554 4555554   666653 3344432  1  245566666553

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=97.72  E-value=9.4e-05  Score=64.59  Aligned_cols=89  Identities=19%  Similarity=0.179  Sum_probs=65.9

Q ss_pred             CeecCCCCCcc-chhhcCCCCCCEEEccCCCc-cCCcc-cccCCc---cccccccccCcCC-CC---CCCCcEEecCCCC
Q 020571            1 MNLVENKLESL-PASIGCLSSLEFLHLTRNNL-SLPEL-PVLLSH---IEARNCKQLQSLP-EL---PSCPEELDTSILE   70 (324)
Q Consensus         1 ~~L~~~~l~~l-P~~i~~l~~L~~L~L~~n~~-~lP~~-i~~L~~---L~l~~C~~L~~lP-~l---p~sL~~L~~~~C~   70 (324)
                      |+|++|.|..+ |..+..+++|++|+|++|.+ .+|.. +..+++   |+|+++ ++..++ ..   .++|+.|+++++ 
T Consensus        61 L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N-  138 (220)
T 2v9t_B           61 IDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNAN-KINCLRVDAFQDLHNLNLLSLYDN-  138 (220)
T ss_dssp             EECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-
T ss_pred             EECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCC-CCCEeCHHHcCCCCCCCEEECCCC-
Confidence            57899999877 77899999999999999999 99976 466665   999985 566664 32   378999999985 


Q ss_pred             CCCccCCC-CC-cccccceeccC
Q 020571           71 SLSKHFRP-TA-SRKLTYFMFTN   91 (324)
Q Consensus        71 sL~~~~~~-~~-~~~~~~l~~~n   91 (324)
                      .+..++.. +. ...+..|.+.+
T Consensus       139 ~l~~~~~~~~~~l~~L~~L~L~~  161 (220)
T 2v9t_B          139 KLQTIAKGTFSPLRAIQTMHLAQ  161 (220)
T ss_dssp             CCSCCCTTTTTTCTTCCEEECCS
T ss_pred             cCCEECHHHHhCCCCCCEEEeCC
Confidence            57776653 22 23445566543

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=97.71  E-value=2.3e-05  Score=72.21  Aligned_cols=92  Identities=21%  Similarity=0.248  Sum_probs=70.7

Q ss_pred             CeecCCCCC---ccchhhcCCCCCCEEEccC-CCc--cCCcccccCCc---cccccccccCcCCCC---CCCCcEEecCC
Q 020571            1 MNLVENKLE---SLPASIGCLSSLEFLHLTR-NNL--SLPELPVLLSH---IEARNCKQLQSLPEL---PSCPEELDTSI   68 (324)
Q Consensus         1 ~~L~~~~l~---~lP~~i~~l~~L~~L~L~~-n~~--~lP~~i~~L~~---L~l~~C~~L~~lP~l---p~sL~~L~~~~   68 (324)
                      |+|++|+|.   .+|..++.+++|++|+|++ |++  .+|..|.++++   |+|+++.-...+|..   .++|+.|++++
T Consensus        55 L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~  134 (313)
T 1ogq_A           55 LDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSY  134 (313)
T ss_dssp             EEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCS
T ss_pred             EECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCC
Confidence            578899997   6999999999999999996 888  89999998887   999987655577753   37899999999


Q ss_pred             CCCCCccCCCCC-cccccceeccCC
Q 020571           69 LESLSKHFRPTA-SRKLTYFMFTNC   92 (324)
Q Consensus        69 C~sL~~~~~~~~-~~~~~~l~~~nC   92 (324)
                      +.--..+|..+. ..++..|++.++
T Consensus       135 N~l~~~~p~~~~~l~~L~~L~L~~N  159 (313)
T 1ogq_A          135 NALSGTLPPSISSLPNLVGITFDGN  159 (313)
T ss_dssp             SEEESCCCGGGGGCTTCCEEECCSS
T ss_pred             CccCCcCChHHhcCCCCCeEECcCC
Confidence            743335554433 245556776654

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=97.71  E-value=5.4e-05  Score=69.98  Aligned_cols=90  Identities=18%  Similarity=0.197  Sum_probs=52.8

Q ss_pred             eecCCCCCccchhhcCCCCCCEEEccCCCc-cCCcccccCCc---cccccccccCcCCCCC--CCCcEEecCCCCCCCcc
Q 020571            2 NLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSH---IEARNCKQLQSLPELP--SCPEELDTSILESLSKH   75 (324)
Q Consensus         2 ~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~---L~l~~C~~L~~lP~lp--~sL~~L~~~~C~sL~~~   75 (324)
                      +++++.+..+|. ++.+++|++|+|++|.+ .+|. +..+++   |++++| .+..+|.+.  ++|+.|++.+| .+..+
T Consensus        50 ~l~~~~i~~~~~-~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n-~i~~~~~~~~l~~L~~L~l~~n-~i~~~  125 (347)
T 4fmz_A           50 VVAGEKVASIQG-IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTN-KITDISALQNLTNLRELYLNED-NISDI  125 (347)
T ss_dssp             ECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGGGTTCTTCSEEECTTS-CCCCC
T ss_pred             EEeCCccccchh-hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCC-cccCchHHcCCCcCCEEECcCC-cccCc
Confidence            566677777764 77777777777777777 7765 555555   777665 455555432  56677777664 34444


Q ss_pred             CCCCCcccccceeccCCccc
Q 020571           76 FRPTASRKLTYFMFTNCLKL   95 (324)
Q Consensus        76 ~~~~~~~~~~~l~~~nC~~L   95 (324)
                      +......++..|++.+|..+
T Consensus       126 ~~~~~l~~L~~L~l~~n~~~  145 (347)
T 4fmz_A          126 SPLANLTKMYSLNLGANHNL  145 (347)
T ss_dssp             GGGTTCTTCCEEECTTCTTC
T ss_pred             hhhccCCceeEEECCCCCCc
Confidence            33222234445555555433

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=97.71  E-value=5.3e-05  Score=70.03  Aligned_cols=90  Identities=17%  Similarity=0.197  Sum_probs=69.1

Q ss_pred             CeecCCCCCccchhhcCCCCCCEEEccCCCc-cCCcccccCCc---cccccccccCcCCCC--CCCCcEEecCCCCCCCc
Q 020571            1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSH---IEARNCKQLQSLPEL--PSCPEELDTSILESLSK   74 (324)
Q Consensus         1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~---L~l~~C~~L~~lP~l--p~sL~~L~~~~C~sL~~   74 (324)
                      |+|++|.+..+|. +..+++|++|+|++|.+ .+| .+..+++   |++++| .+..+|.+  .++|+.|++.+|..+..
T Consensus        71 L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n-~i~~~~~~~~l~~L~~L~l~~n~~~~~  147 (347)
T 4fmz_A           71 LNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNED-NISDISPLANLTKMYSLNLGANHNLSD  147 (347)
T ss_dssp             EECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTS-CCCCCGGGTTCTTCCEEECTTCTTCCC
T ss_pred             EEccCCccccchh-hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECcCC-cccCchhhccCCceeEEECCCCCCccc
Confidence            4788999999987 99999999999999999 887 4777776   889875 45666654  37899999999987776


Q ss_pred             cCCCCCcccccceeccCCc
Q 020571           75 HFRPTASRKLTYFMFTNCL   93 (324)
Q Consensus        75 ~~~~~~~~~~~~l~~~nC~   93 (324)
                      ++.-.....+..|.+.+|.
T Consensus       148 ~~~~~~l~~L~~L~l~~~~  166 (347)
T 4fmz_A          148 LSPLSNMTGLNYLTVTESK  166 (347)
T ss_dssp             CGGGTTCTTCCEEECCSSC
T ss_pred             ccchhhCCCCcEEEecCCC
Confidence            6653344556677776664

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=97.70  E-value=1.6e-05  Score=66.74  Aligned_cols=88  Identities=22%  Similarity=0.248  Sum_probs=56.1

Q ss_pred             CeecCCCCCccchhhcCCC-CCCEEEccCCCc-cCCcccccCCc---cccccccccCcCCC-C---CCCCcEEecCCCCC
Q 020571            1 MNLVENKLESLPASIGCLS-SLEFLHLTRNNL-SLPELPVLLSH---IEARNCKQLQSLPE-L---PSCPEELDTSILES   71 (324)
Q Consensus         1 ~~L~~~~l~~lP~~i~~l~-~L~~L~L~~n~~-~lP~~i~~L~~---L~l~~C~~L~~lP~-l---p~sL~~L~~~~C~s   71 (324)
                      ++|++|+|..+|. +..+. +|+.|+|++|.+ .+ ..+..+++   |+|+++ .+..+|. +   .++|+.|+++++ .
T Consensus        24 L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~   99 (176)
T 1a9n_A           24 LDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNN-RICRIGEGLDQALPDLTELILTNN-S   99 (176)
T ss_dssp             EECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSS-CCCEECSCHHHHCTTCCEEECCSC-C
T ss_pred             EEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCC-cccccCcchhhcCCCCCEEECCCC-c
Confidence            4677888887764 54444 888888888888 77 45666665   888774 4666663 2   367888888875 4


Q ss_pred             CCccCC--CCC-cccccceeccCC
Q 020571           72 LSKHFR--PTA-SRKLTYFMFTNC   92 (324)
Q Consensus        72 L~~~~~--~~~-~~~~~~l~~~nC   92 (324)
                      +..++.  .+. ...+..|.+.++
T Consensus       100 i~~~~~~~~l~~l~~L~~L~l~~N  123 (176)
T 1a9n_A          100 LVELGDLDPLASLKSLTYLCILRN  123 (176)
T ss_dssp             CCCGGGGGGGGGCTTCCEEECCSS
T ss_pred             CCcchhhHhhhcCCCCCEEEecCC
Confidence            555554  221 234455555544

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=97.69  E-value=0.00012  Score=65.76  Aligned_cols=88  Identities=23%  Similarity=0.241  Sum_probs=65.6

Q ss_pred             CeecCCCCCccchhhcCCCCCCEEEccCCCc-cCCcccccCCc---cccccccccCcCCC--C--CCCCcEEecCCCCCC
Q 020571            1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSH---IEARNCKQLQSLPE--L--PSCPEELDTSILESL   72 (324)
Q Consensus         1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~---L~l~~C~~L~~lP~--l--p~sL~~L~~~~C~sL   72 (324)
                      +++++|.+..++ .++.+++|+.|+|++|.+ .+| .+..+++   |+|++| .+..+|.  +  .++|+.|++.+| .+
T Consensus        46 L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l  121 (272)
T 3rfs_A           46 IIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGN-QLQSLPNGVFDKLTNLKELVLVEN-QL  121 (272)
T ss_dssp             EECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTS-CC
T ss_pred             eeeCCCCccccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCC-ccCccChhHhcCCcCCCEEECCCC-cC
Confidence            357778888877 589999999999999999 876 5777766   999886 5666664  2  378999999986 46


Q ss_pred             CccCCC-C-CcccccceeccCC
Q 020571           73 SKHFRP-T-ASRKLTYFMFTNC   92 (324)
Q Consensus        73 ~~~~~~-~-~~~~~~~l~~~nC   92 (324)
                      ..++.. + ....+..|++.+|
T Consensus       122 ~~~~~~~~~~l~~L~~L~L~~n  143 (272)
T 3rfs_A          122 QSLPDGVFDKLTNLTYLNLAHN  143 (272)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSS
T ss_pred             CccCHHHhccCCCCCEEECCCC
Confidence            666543 2 2355667888776

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=97.69  E-value=7.1e-05  Score=73.56  Aligned_cols=89  Identities=20%  Similarity=0.269  Sum_probs=66.4

Q ss_pred             CeecCCCCCc-cch---hhcCCCCCCEEEccCCCc-cCCc---ccccCCc---cccccccccCcCCCC---CCCCcEEec
Q 020571            1 MNLVENKLES-LPA---SIGCLSSLEFLHLTRNNL-SLPE---LPVLLSH---IEARNCKQLQSLPEL---PSCPEELDT   66 (324)
Q Consensus         1 ~~L~~~~l~~-lP~---~i~~l~~L~~L~L~~n~~-~lP~---~i~~L~~---L~l~~C~~L~~lP~l---p~sL~~L~~   66 (324)
                      |+|++|.+.. +|.   .++.+++|+.|+|++|.+ .+|.   .+..+++   |+|++| ++..+|..   +++|+.|++
T Consensus       339 L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~~~~L~~L~L  417 (549)
T 2z81_A          339 LDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRN-TFHPMPDSCQWPEKMRFLNL  417 (549)
T ss_dssp             EECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTC-CCCCCCSCCCCCTTCCEEEC
T ss_pred             EEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCC-CCccCChhhcccccccEEEC
Confidence            5788998874 443   378899999999999999 8873   4666666   999986 67788863   478999999


Q ss_pred             CCCCCCCccCCCCCcccccceeccCC
Q 020571           67 SILESLSKHFRPTASRKLTYFMFTNC   92 (324)
Q Consensus        67 ~~C~sL~~~~~~~~~~~~~~l~~~nC   92 (324)
                      ++|. +..++.... ..+..|++++|
T Consensus       418 s~N~-l~~l~~~~~-~~L~~L~Ls~N  441 (549)
T 2z81_A          418 SSTG-IRVVKTCIP-QTLEVLDVSNN  441 (549)
T ss_dssp             TTSC-CSCCCTTSC-TTCSEEECCSS
T ss_pred             CCCC-cccccchhc-CCceEEECCCC
Confidence            9974 766664432 34567777766

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=97.69  E-value=1.6e-05  Score=80.65  Aligned_cols=73  Identities=16%  Similarity=0.199  Sum_probs=56.8

Q ss_pred             CCCCCccchhhcCCCCCCEEEccCCCc-c------------------CCcccc--cCCc---cccccccccCcCCCCC--
Q 020571            5 ENKLESLPASIGCLSSLEFLHLTRNNL-S------------------LPELPV--LLSH---IEARNCKQLQSLPELP--   58 (324)
Q Consensus         5 ~~~l~~lP~~i~~l~~L~~L~L~~n~~-~------------------lP~~i~--~L~~---L~l~~C~~L~~lP~lp--   58 (324)
                      +|+|+.||..++.+++|++|+|++|.+ .                  +|..|+  ++++   |+|++|.....+|...  
T Consensus       192 ~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~  271 (636)
T 4eco_A          192 SNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA  271 (636)
T ss_dssp             SCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTT
T ss_pred             cCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhc
Confidence            456667888899999999999999988 7                  898888  8877   8888888888888542  


Q ss_pred             -CCCcEEecCCCCCCCc--cCC
Q 020571           59 -SCPEELDTSILESLSK--HFR   77 (324)
Q Consensus        59 -~sL~~L~~~~C~sL~~--~~~   77 (324)
                       ++|+.|++++|..+..  +|.
T Consensus       272 l~~L~~L~Ls~n~~l~~~~lp~  293 (636)
T 4eco_A          272 LPEMQLINVACNRGISGEQLKD  293 (636)
T ss_dssp             CSSCCEEECTTCTTSCHHHHHH
T ss_pred             CCCCCEEECcCCCCCccccchH
Confidence             5788888888764553  554

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=97.69  E-value=6.6e-05  Score=72.49  Aligned_cols=94  Identities=22%  Similarity=0.175  Sum_probs=61.3

Q ss_pred             CeecCCCCCcc-chhhcCCCCCCEEEccCCCc-cCC-cccccCCc---cccccccccCcCCCC----CCCCcEEecCCCC
Q 020571            1 MNLVENKLESL-PASIGCLSSLEFLHLTRNNL-SLP-ELPVLLSH---IEARNCKQLQSLPEL----PSCPEELDTSILE   70 (324)
Q Consensus         1 ~~L~~~~l~~l-P~~i~~l~~L~~L~L~~n~~-~lP-~~i~~L~~---L~l~~C~~L~~lP~l----p~sL~~L~~~~C~   70 (324)
                      |+|++|+|..+ |..++.+++|+.|+|++|.+ .++ ..+.++++   |+|+++ ++..+|.-    .++|+.|+++++ 
T Consensus        80 L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-  157 (452)
T 3zyi_A           80 LNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN-WLTVIPSGAFEYLSKLRELWLRNN-  157 (452)
T ss_dssp             EECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSBCCTTTSSSCTTCCEEECCSC-
T ss_pred             EECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC-cCCccChhhhcccCCCCEEECCCC-
Confidence            46778888765 55678888888888888888 555 56666665   888774 46666642    367888888875 


Q ss_pred             CCCccCCC-C-CcccccceeccCCcccc
Q 020571           71 SLSKHFRP-T-ASRKLTYFMFTNCLKLN   96 (324)
Q Consensus        71 sL~~~~~~-~-~~~~~~~l~~~nC~~L~   96 (324)
                      .++.++.. + ....+..|++.+|.++.
T Consensus       158 ~l~~~~~~~~~~l~~L~~L~l~~~~~l~  185 (452)
T 3zyi_A          158 PIESIPSYAFNRVPSLMRLDLGELKKLE  185 (452)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCCCTTCC
T ss_pred             CcceeCHhHHhcCCcccEEeCCCCCCcc
Confidence            46666542 1 22345556666555443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=97.69  E-value=0.00013  Score=62.56  Aligned_cols=66  Identities=38%  Similarity=0.421  Sum_probs=33.4

Q ss_pred             eecCCCCCccchh-hcCCCCCCEEEccCCCc-cCCcc-cccCCc---cccccccccCcCCC--C--CCCCcEEecCC
Q 020571            2 NLVENKLESLPAS-IGCLSSLEFLHLTRNNL-SLPEL-PVLLSH---IEARNCKQLQSLPE--L--PSCPEELDTSI   68 (324)
Q Consensus         2 ~L~~~~l~~lP~~-i~~l~~L~~L~L~~n~~-~lP~~-i~~L~~---L~l~~C~~L~~lP~--l--p~sL~~L~~~~   68 (324)
                      +|++|+|..+|.. ++.+++|+.|+|++|++ .+|.. +..+++   |+|+++ ++..+|.  +  .++|+.|++++
T Consensus        34 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~  109 (208)
T 2o6s_A           34 DLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN-QLQSLPNGVFDKLTQLKELALNT  109 (208)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred             EcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC-cCCccCHhHhcCccCCCEEEcCC
Confidence            4556666555543 35566666666666666 55543 233433   555553 3344432  1  24455555554

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=97.69  E-value=1.6e-05  Score=64.71  Aligned_cols=73  Identities=22%  Similarity=0.249  Sum_probs=57.6

Q ss_pred             CeecCCCCCccchhhcCCCCCCEEEccCCCc-c-CCcccccCCc---cccccccccCcCC--C-C--CCCCcEEecCCCC
Q 020571            1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-S-LPELPVLLSH---IEARNCKQLQSLP--E-L--PSCPEELDTSILE   70 (324)
Q Consensus         1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~-lP~~i~~L~~---L~l~~C~~L~~lP--~-l--p~sL~~L~~~~C~   70 (324)
                      ++|++|.|..+ ..++.+++|++|+|++|.+ . +|..+..+++   |++++|. +..+|  . +  .++|+.|++++| 
T Consensus        47 L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N-  123 (149)
T 2je0_A           47 LSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNC-  123 (149)
T ss_dssp             EECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTC-
T ss_pred             EECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCC-
Confidence            47889999888 6799999999999999999 7 8887766766   9999864 55553  1 2  368999999997 


Q ss_pred             CCCccC
Q 020571           71 SLSKHF   76 (324)
Q Consensus        71 sL~~~~   76 (324)
                      .+..++
T Consensus       124 ~l~~~~  129 (149)
T 2je0_A          124 EVTNLN  129 (149)
T ss_dssp             GGGGST
T ss_pred             cccchH
Confidence            555554

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=97.68  E-value=0.00014  Score=62.49  Aligned_cols=33  Identities=52%  Similarity=0.739  Sum_probs=15.4

Q ss_pred             eecCCCCCccchh-hcCCCCCCEEEccCCCc-cCC
Q 020571            2 NLVENKLESLPAS-IGCLSSLEFLHLTRNNL-SLP   34 (324)
Q Consensus         2 ~L~~~~l~~lP~~-i~~l~~L~~L~L~~n~~-~lP   34 (324)
                      +|++|+|+.+|.. +..+++|++|+|++|.+ .+|
T Consensus        58 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~   92 (208)
T 2o6s_A           58 YLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLP   92 (208)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred             ECCCCccCccChhhcCCCCCcCEEECCCCcCCccC
Confidence            3444444444433 24445555555555555 444

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=97.68  E-value=5.6e-05  Score=69.63  Aligned_cols=90  Identities=21%  Similarity=0.296  Sum_probs=56.3

Q ss_pred             CeecCCCCCccch-hhcCCCCCCEEEccCCCc-cC-CcccccCCc---cccccccccCcCCC-CCCCCcEEecCCCCCCC
Q 020571            1 MNLVENKLESLPA-SIGCLSSLEFLHLTRNNL-SL-PELPVLLSH---IEARNCKQLQSLPE-LPSCPEELDTSILESLS   73 (324)
Q Consensus         1 ~~L~~~~l~~lP~-~i~~l~~L~~L~L~~n~~-~l-P~~i~~L~~---L~l~~C~~L~~lP~-lp~sL~~L~~~~C~sL~   73 (324)
                      ++|++|+|+.+|. .++.+++|++|+|++|.+ .+ |..+.++++   |+|+++ .+..+|. ++++|+.|++.++ .+.
T Consensus        57 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~~~L~~L~l~~n-~l~  134 (330)
T 1xku_A           57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN-QLKELPEKMPKTLQELRVHEN-EIT  134 (330)
T ss_dssp             EECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCSBCCSSCCTTCCEEECCSS-CCC
T ss_pred             EECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC-cCCccChhhcccccEEECCCC-ccc
Confidence            4677777777665 577778888888888887 65 666776665   777764 4666663 4577888887775 344


Q ss_pred             ccCCC-C-CcccccceeccCC
Q 020571           74 KHFRP-T-ASRKLTYFMFTNC   92 (324)
Q Consensus        74 ~~~~~-~-~~~~~~~l~~~nC   92 (324)
                      .++.. + ....+..|++.++
T Consensus       135 ~~~~~~~~~l~~L~~L~l~~n  155 (330)
T 1xku_A          135 KVRKSVFNGLNQMIVVELGTN  155 (330)
T ss_dssp             BBCHHHHTTCTTCCEEECCSS
T ss_pred             ccCHhHhcCCccccEEECCCC
Confidence            44321 1 1233445555544

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.67  E-value=3.6e-05  Score=77.24  Aligned_cols=74  Identities=24%  Similarity=0.227  Sum_probs=62.1

Q ss_pred             CeecCCCCCccchhhcCCCCCCEEEccCCCc-cCCcccccCCc---cccccccccCcC--CCC---CCCCcEEecCCCCC
Q 020571            1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSH---IEARNCKQLQSL--PEL---PSCPEELDTSILES   71 (324)
Q Consensus         1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~---L~l~~C~~L~~l--P~l---p~sL~~L~~~~C~s   71 (324)
                      |+|++|.|+.+|..++.+++|+.|+|++|.+ .|| .+++|++   |+|+++ ++..+  |..   .++|+.|+++++ .
T Consensus       468 L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N-~l~~~~~p~~l~~l~~L~~L~L~~N-~  544 (567)
T 1dce_A          468 LDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGN-S  544 (567)
T ss_dssp             EECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSS-CCCSSSTTGGGGGCTTCCEEECTTS-G
T ss_pred             eecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCC-CCCCCCCcHHHhcCCCCCEEEecCC-c
Confidence            5899999999999999999999999999999 999 7888887   999985 56666  542   378999999986 4


Q ss_pred             CCccCC
Q 020571           72 LSKHFR   77 (324)
Q Consensus        72 L~~~~~   77 (324)
                      |..++.
T Consensus       545 l~~~~~  550 (567)
T 1dce_A          545 LCQEEG  550 (567)
T ss_dssp             GGGSSS
T ss_pred             CCCCcc
Confidence            655553

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=97.67  E-value=5.3e-05  Score=69.08  Aligned_cols=88  Identities=18%  Similarity=0.187  Sum_probs=64.8

Q ss_pred             CeecCCCCCccchhhcCCCCCCEEEccCCCc-cCCcccccCCc---cccccccccCcCCCCC--CCCcEEecCCCCCCCc
Q 020571            1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSH---IEARNCKQLQSLPELP--SCPEELDTSILESLSK   74 (324)
Q Consensus         1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~---L~l~~C~~L~~lP~lp--~sL~~L~~~~C~sL~~   74 (324)
                      |+|++|.|..++. ++.+++|+.|+|++|.+ .+|. +..+++   |+|++| .+..++.+.  ++|+.|++++| .+..
T Consensus        73 L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~n-~i~~~~~l~~l~~L~~L~l~~n-~l~~  148 (291)
T 1h6t_A           73 LFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEHN-GISDINGLVHLPQLESLYLGNN-KITD  148 (291)
T ss_dssp             EECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECTTS-CCCCCGGGGGCTTCCEEECCSS-CCCC
T ss_pred             EEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh-hccCCCCCEEECCCC-cCCCChhhcCCCCCCEEEccCC-cCCc
Confidence            4788899998887 89999999999999999 8775 777766   888875 566666543  78999999886 4555


Q ss_pred             cCCCCCcccccceeccCC
Q 020571           75 HFRPTASRKLTYFMFTNC   92 (324)
Q Consensus        75 ~~~~~~~~~~~~l~~~nC   92 (324)
                      ++.-....++..|++++|
T Consensus       149 ~~~l~~l~~L~~L~L~~N  166 (291)
T 1h6t_A          149 ITVLSRLTKLDTLSLEDN  166 (291)
T ss_dssp             CGGGGGCTTCSEEECCSS
T ss_pred             chhhccCCCCCEEEccCC
Confidence            532223345566777665

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=97.67  E-value=9.8e-05  Score=66.51  Aligned_cols=68  Identities=22%  Similarity=0.212  Sum_probs=39.6

Q ss_pred             eecCCCCCccch-hhcCCCCCCEEEccCCCc-cC-CcccccCCc---cccccccccCcCC-CC---CCCCcEEecCCC
Q 020571            2 NLVENKLESLPA-SIGCLSSLEFLHLTRNNL-SL-PELPVLLSH---IEARNCKQLQSLP-EL---PSCPEELDTSIL   69 (324)
Q Consensus         2 ~L~~~~l~~lP~-~i~~l~~L~~L~L~~n~~-~l-P~~i~~L~~---L~l~~C~~L~~lP-~l---p~sL~~L~~~~C   69 (324)
                      +|++|+|..+|. .++.+++|+.|+|++|.+ .+ |..+.++++   |+|+++..+..++ ..   .++|+.|++.+|
T Consensus        38 ~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n  115 (285)
T 1ozn_A           38 FLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRC  115 (285)
T ss_dssp             ECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             EeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCC
Confidence            556666665553 456666666666666666 44 455555554   6666655555552 21   255666666664

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=97.66  E-value=0.0001  Score=67.22  Aligned_cols=89  Identities=27%  Similarity=0.234  Sum_probs=64.6

Q ss_pred             CeecCCCCCcc-chhhcCCCCCCEEEccCCCc-cCCcccccCCc---cccccccccCcCCCCC---CCCcEEecCCCCCC
Q 020571            1 MNLVENKLESL-PASIGCLSSLEFLHLTRNNL-SLPELPVLLSH---IEARNCKQLQSLPELP---SCPEELDTSILESL   72 (324)
Q Consensus         1 ~~L~~~~l~~l-P~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~---L~l~~C~~L~~lP~lp---~sL~~L~~~~C~sL   72 (324)
                      |+|++|.|..+ |..+..+++|+.|+|++|.+ .+|.. ..+++   |+|++ ..+..+|...   ++|+.|+++++ .+
T Consensus        36 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~-N~l~~l~~~~~~l~~L~~L~l~~N-~l  112 (290)
T 1p9a_G           36 LHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSH-NQLQSLPLLGQTLPALTVLDVSFN-RL  112 (290)
T ss_dssp             EECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECCS-SCCSSCCCCTTTCTTCCEEECCSS-CC
T ss_pred             EEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECCC-CcCCcCchhhccCCCCCEEECCCC-cC
Confidence            57888988876 45788999999999999999 88763 45554   88987 4677888643   67899999885 56


Q ss_pred             CccCCC-CC-cccccceeccCC
Q 020571           73 SKHFRP-TA-SRKLTYFMFTNC   92 (324)
Q Consensus        73 ~~~~~~-~~-~~~~~~l~~~nC   92 (324)
                      ..++.. +. ..++..|.++++
T Consensus       113 ~~l~~~~~~~l~~L~~L~L~~N  134 (290)
T 1p9a_G          113 TSLPLGALRGLGELQELYLKGN  134 (290)
T ss_dssp             CCCCSSTTTTCTTCCEEECTTS
T ss_pred             cccCHHHHcCCCCCCEEECCCC
Confidence            666532 22 245666777665

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=97.65  E-value=0.00015  Score=64.24  Aligned_cols=90  Identities=23%  Similarity=0.214  Sum_probs=60.2

Q ss_pred             CeecCCCCCccch-hhcCCCCCCEEEccCCCc-cCCc-ccccCCc---cccccccccCcCCC----CCCCCcEEecCCCC
Q 020571            1 MNLVENKLESLPA-SIGCLSSLEFLHLTRNNL-SLPE-LPVLLSH---IEARNCKQLQSLPE----LPSCPEELDTSILE   70 (324)
Q Consensus         1 ~~L~~~~l~~lP~-~i~~l~~L~~L~L~~n~~-~lP~-~i~~L~~---L~l~~C~~L~~lP~----lp~sL~~L~~~~C~   70 (324)
                      |+|++|+|..++. .++.+++|++|+|++|.+ .++. .+..+++   |+|+++ ++..+|.    -.++|+.|+++++ 
T Consensus        40 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-  117 (251)
T 3m19_A           40 LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN-QLASLPLGVFDHLTQLDKLYLGGN-  117 (251)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSS-
T ss_pred             EEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC-cccccChhHhcccCCCCEEEcCCC-
Confidence            4678888876654 578888888888888888 6654 3566655   888774 4556552    2367888888875 


Q ss_pred             CCCccCCCC--CcccccceeccCC
Q 020571           71 SLSKHFRPT--ASRKLTYFMFTNC   92 (324)
Q Consensus        71 sL~~~~~~~--~~~~~~~l~~~nC   92 (324)
                      .+..++...  ....+..|+++++
T Consensus       118 ~l~~~~~~~~~~l~~L~~L~Ls~N  141 (251)
T 3m19_A          118 QLKSLPSGVFDRLTKLKELRLNTN  141 (251)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cCCCcChhHhccCCcccEEECcCC
Confidence            566666532  2345556666554

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=97.64  E-value=9.6e-05  Score=71.05  Aligned_cols=92  Identities=22%  Similarity=0.221  Sum_probs=53.1

Q ss_pred             CeecCCCCCccc-hhhcCCCCCCEEEccCCCc-cCC-cccccCCc---cccccccccCcCCC--C--CCCCcEEecCCCC
Q 020571            1 MNLVENKLESLP-ASIGCLSSLEFLHLTRNNL-SLP-ELPVLLSH---IEARNCKQLQSLPE--L--PSCPEELDTSILE   70 (324)
Q Consensus         1 ~~L~~~~l~~lP-~~i~~l~~L~~L~L~~n~~-~lP-~~i~~L~~---L~l~~C~~L~~lP~--l--p~sL~~L~~~~C~   70 (324)
                      |+|++|+|..++ ..++.+++|+.|+|++|.+ .++ ..+.++++   |+|+++ ++..+|.  +  .++|+.|+++++ 
T Consensus        69 L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-  146 (440)
T 3zyj_A           69 LNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN-RLTTIPNGAFVYLSKLKELWLRNN-  146 (440)
T ss_dssp             EECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS-CCSSCCTTTSCSCSSCCEEECCSC-
T ss_pred             EEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC-cCCeeCHhHhhccccCceeeCCCC-
Confidence            456777776654 5667777777777777777 555 44555555   777764 5556653  1  256777777764 


Q ss_pred             CCCccCCC-C-CcccccceeccCCcc
Q 020571           71 SLSKHFRP-T-ASRKLTYFMFTNCLK   94 (324)
Q Consensus        71 sL~~~~~~-~-~~~~~~~l~~~nC~~   94 (324)
                      .++.++.. + ....+..|++.+|..
T Consensus       147 ~i~~~~~~~~~~l~~L~~L~l~~~~~  172 (440)
T 3zyj_A          147 PIESIPSYAFNRIPSLRRLDLGELKR  172 (440)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCCCTT
T ss_pred             cccccCHHHhhhCcccCEeCCCCCCC
Confidence            35555432 1 123344455544433

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=97.64  E-value=6e-05  Score=76.25  Aligned_cols=66  Identities=21%  Similarity=0.216  Sum_probs=39.0

Q ss_pred             CeecCCCCCccchhhcCCCCCCEEEccCCCc-cCCcccccCCc---cccccccccCcCCCC--CCCCcEEecCCC
Q 020571            1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSH---IEARNCKQLQSLPEL--PSCPEELDTSIL   69 (324)
Q Consensus         1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~---L~l~~C~~L~~lP~l--p~sL~~L~~~~C   69 (324)
                      |+|++|.|..+|. ++.+++|+.|+|++|.+ .+| .+..|++   |+|++| .+..+|.+  .++|+.|++++|
T Consensus        70 L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N-~l~~l~~l~~l~~L~~L~Ls~N  141 (605)
T 1m9s_A           70 LFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEHN-GISDINGLVHLPQLESLYLGNN  141 (605)
T ss_dssp             EECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTTS-CCCCCGGGGGCTTCSEEECCSS
T ss_pred             EEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEecCC-CCCCCccccCCCccCEEECCCC
Confidence            4667777776665 67777777777777777 665 3555554   666654 34444433  245555555543

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=97.63  E-value=0.00016  Score=64.02  Aligned_cols=88  Identities=19%  Similarity=0.172  Sum_probs=63.8

Q ss_pred             CeecCCCCCccchhhcCCCCCCEEEccCCCc-cCCc-ccccCCc---cccccccccCcCCC--C--CCCCcEEecCCCCC
Q 020571            1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPE-LPVLLSH---IEARNCKQLQSLPE--L--PSCPEELDTSILES   71 (324)
Q Consensus         1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~-~i~~L~~---L~l~~C~~L~~lP~--l--p~sL~~L~~~~C~s   71 (324)
                      +++++++|..+|..+.  ++|+.|+|++|++ .++. .+.++++   |+|+++ .+..++.  +  .++|+.|+++++ .
T Consensus        19 l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n-~   94 (251)
T 3m19_A           19 VDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYN-QLQTLSAGVFDDLTELGTLGLANN-Q   94 (251)
T ss_dssp             EECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTS-C
T ss_pred             EecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCC-cCCccCHhHhccCCcCCEEECCCC-c
Confidence            3677888999998776  6899999999999 7665 5777766   999985 5555553  2  378999999985 5


Q ss_pred             CCccCCCC--CcccccceeccCC
Q 020571           72 LSKHFRPT--ASRKLTYFMFTNC   92 (324)
Q Consensus        72 L~~~~~~~--~~~~~~~l~~~nC   92 (324)
                      +..++...  ...++..|+++++
T Consensus        95 l~~~~~~~~~~l~~L~~L~L~~N  117 (251)
T 3m19_A           95 LASLPLGVFDHLTQLDKLYLGGN  117 (251)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSS
T ss_pred             ccccChhHhcccCCCCEEEcCCC
Confidence            66666432  2345667777665

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=97.63  E-value=0.00011  Score=64.24  Aligned_cols=88  Identities=19%  Similarity=0.218  Sum_probs=59.5

Q ss_pred             CeecCCCCCccchhhcCCCCCCEEEccCCCc-cCCc--ccccCCc---cccccccccCcCCC--C--CCCCcEEecCCCC
Q 020571            1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPE--LPVLLSH---IEARNCKQLQSLPE--L--PSCPEELDTSILE   70 (324)
Q Consensus         1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~--~i~~L~~---L~l~~C~~L~~lP~--l--p~sL~~L~~~~C~   70 (324)
                      ++++++.|+++|..+.  ..++.|+|++|.+ .++.  .+..+++   |+|+++ ++..++.  +  .++|+.|+++++ 
T Consensus        16 l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N-   91 (220)
T 2v70_A           16 VDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLTSN-   91 (220)
T ss_dssp             EECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-
T ss_pred             eEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEECCCC-
Confidence            4678888989998764  4568999999999 7743  3666666   888874 4666653  2  377899999885 


Q ss_pred             CCCccCCC-C-CcccccceeccCC
Q 020571           71 SLSKHFRP-T-ASRKLTYFMFTNC   92 (324)
Q Consensus        71 sL~~~~~~-~-~~~~~~~l~~~nC   92 (324)
                      .+..++.. + ....+..|+++++
T Consensus        92 ~l~~~~~~~~~~l~~L~~L~Ls~N  115 (220)
T 2v70_A           92 RLENVQHKMFKGLESLKTLMLRSN  115 (220)
T ss_dssp             CCCCCCGGGGTTCSSCCEEECTTS
T ss_pred             ccCccCHhHhcCCcCCCEEECCCC
Confidence            45655542 2 2244556666554

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=97.61  E-value=0.00011  Score=68.24  Aligned_cols=87  Identities=16%  Similarity=0.132  Sum_probs=66.4

Q ss_pred             eecCC-CCCccchhhcCCCCCCEEEccC-CCc-cCC-cccccCCc---cccccccccCcCCC-C---CCCCcEEecCCCC
Q 020571            2 NLVEN-KLESLPASIGCLSSLEFLHLTR-NNL-SLP-ELPVLLSH---IEARNCKQLQSLPE-L---PSCPEELDTSILE   70 (324)
Q Consensus         2 ~L~~~-~l~~lP~~i~~l~~L~~L~L~~-n~~-~lP-~~i~~L~~---L~l~~C~~L~~lP~-l---p~sL~~L~~~~C~   70 (324)
                      +++++ +|..||. |+.+++|+.|+|++ |.+ .+| ..|.+|++   |+|+++ +|..+|. .   .++|+.|++++ .
T Consensus        14 ~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~-N   90 (347)
T 2ifg_A           14 RCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSF-N   90 (347)
T ss_dssp             ECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCS-S
T ss_pred             EcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCC-C
Confidence            45666 8999999 99999999999997 999 888 46777777   999985 6777764 2   47899999998 4


Q ss_pred             CCCccCCCC-CcccccceeccC
Q 020571           71 SLSKHFRPT-ASRKLTYFMFTN   91 (324)
Q Consensus        71 sL~~~~~~~-~~~~~~~l~~~n   91 (324)
                      .|..+|... ....+..|.+.+
T Consensus        91 ~l~~~~~~~~~~~~L~~l~l~~  112 (347)
T 2ifg_A           91 ALESLSWKTVQGLSLQELVLSG  112 (347)
T ss_dssp             CCSCCCSTTTCSCCCCEEECCS
T ss_pred             ccceeCHHHcccCCceEEEeeC
Confidence            788887543 223355666644

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=97.61  E-value=4.5e-05  Score=71.03  Aligned_cols=91  Identities=23%  Similarity=0.230  Sum_probs=61.6

Q ss_pred             CeecCCCCCccc-hhhcCCCCCCEEEccCCCc-cCCcc-cccCCc---cccccccccCcCCC---C--CCCCcEEecCCC
Q 020571            1 MNLVENKLESLP-ASIGCLSSLEFLHLTRNNL-SLPEL-PVLLSH---IEARNCKQLQSLPE---L--PSCPEELDTSIL   69 (324)
Q Consensus         1 ~~L~~~~l~~lP-~~i~~l~~L~~L~L~~n~~-~lP~~-i~~L~~---L~l~~C~~L~~lP~---l--p~sL~~L~~~~C   69 (324)
                      ++|++|.|..++ ..++.+++|++|+|++|.+ .+|.. +.++++   |+|+++ .+..+|.   +  .++|+.|++.+|
T Consensus        81 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n  159 (353)
T 2z80_A           81 LVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNM  159 (353)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEES
T ss_pred             EECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCC
Confidence            467888888764 4588888888999988888 88875 666665   888874 5667765   2  367888888887


Q ss_pred             CCCCccCCC-CC-cccccceeccCC
Q 020571           70 ESLSKHFRP-TA-SRKLTYFMFTNC   92 (324)
Q Consensus        70 ~sL~~~~~~-~~-~~~~~~l~~~nC   92 (324)
                      ..+..++.. +. ...+..|++.+|
T Consensus       160 ~~~~~~~~~~~~~l~~L~~L~l~~n  184 (353)
T 2z80_A          160 DTFTKIQRKDFAGLTFLEELEIDAS  184 (353)
T ss_dssp             SSCCEECTTTTTTCCEEEEEEEEET
T ss_pred             ccccccCHHHccCCCCCCEEECCCC
Confidence            666666432 22 233444554443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=97.61  E-value=0.00018  Score=64.49  Aligned_cols=64  Identities=28%  Similarity=0.313  Sum_probs=29.4

Q ss_pred             eecCCCCCccchhhcCCCCCCEEEccCCCc-cCCc-ccccCCc---cccccccccCcCCCC----CCCCcEEecCC
Q 020571            2 NLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPE-LPVLLSH---IEARNCKQLQSLPEL----PSCPEELDTSI   68 (324)
Q Consensus         2 ~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~-~i~~L~~---L~l~~C~~L~~lP~l----p~sL~~L~~~~   68 (324)
                      ++++++|+.+|..+.  ++|+.|+|++|++ .+|. .+.++++   |+|+++ .+..+|.-    .++|+.|++.+
T Consensus        22 ~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~   94 (270)
T 2o6q_A           22 DCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVTD   94 (270)
T ss_dssp             ECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEECCS
T ss_pred             EccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEECCC
Confidence            344445555554443  3455555555555 4443 3444443   555442 33344321    24455555554

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=97.60  E-value=0.00011  Score=77.41  Aligned_cols=89  Identities=19%  Similarity=0.139  Sum_probs=60.4

Q ss_pred             CeecCCCCCccch--hhcCCCCCCEEEccCCCc-cCCcccccCCc---cccccccccCcCCCCC---CC-CcEEecCCCC
Q 020571            1 MNLVENKLESLPA--SIGCLSSLEFLHLTRNNL-SLPELPVLLSH---IEARNCKQLQSLPELP---SC-PEELDTSILE   70 (324)
Q Consensus         1 ~~L~~~~l~~lP~--~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~---L~l~~C~~L~~lP~lp---~s-L~~L~~~~C~   70 (324)
                      |+|++|+|..+|.  .++.+++|+.|+|++|.+ .|| .++++++   |+|++|. +..+|...   ++ |+.|++++|.
T Consensus       553 L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~-l~~lp~~l~~l~~~L~~L~Ls~N~  630 (876)
T 4ecn_A          553 FYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQ-IEEIPEDFCAFTDQVEGLGFSHNK  630 (876)
T ss_dssp             EECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSC-CSCCCTTSCEECTTCCEEECCSSC
T ss_pred             EEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCc-cccchHHHhhccccCCEEECcCCC
Confidence            4677788888887  788888888888888888 888 6777766   7887754 44666421   34 8888888764


Q ss_pred             CCCccCCCCCcc---cccceeccCC
Q 020571           71 SLSKHFRPTASR---KLTYFMFTNC   92 (324)
Q Consensus        71 sL~~~~~~~~~~---~~~~l~~~nC   92 (324)
                       +..+|..+...   .+..|++++|
T Consensus       631 -L~~lp~~~~~~~~~~L~~L~Ls~N  654 (876)
T 4ecn_A          631 -LKYIPNIFNAKSVYVMGSVDFSYN  654 (876)
T ss_dssp             -CCSCCSCCCTTCSSCEEEEECCSS
T ss_pred             -CCcCchhhhccccCCCCEEECcCC
Confidence             66666544322   2445555554

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=97.60  E-value=0.00011  Score=73.31  Aligned_cols=46  Identities=26%  Similarity=0.258  Sum_probs=20.3

Q ss_pred             eecCCCCCcc-chhhcCCCCCCEEEccCCCc-cC-CcccccCCc---ccccc
Q 020571            2 NLVENKLESL-PASIGCLSSLEFLHLTRNNL-SL-PELPVLLSH---IEARN   47 (324)
Q Consensus         2 ~L~~~~l~~l-P~~i~~l~~L~~L~L~~n~~-~l-P~~i~~L~~---L~l~~   47 (324)
                      +|++|.|..+ |..++.+++|++|+|++|.+ .+ |..|+++++   |+|++
T Consensus        62 ~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~  113 (606)
T 3vq2_A           62 DLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVE  113 (606)
T ss_dssp             ECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTT
T ss_pred             eCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccC
Confidence            3444444443 22344444444444444444 33 444444443   44444

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=97.59  E-value=6.3e-05  Score=73.59  Aligned_cols=91  Identities=18%  Similarity=0.183  Sum_probs=56.9

Q ss_pred             CeecCCCCCc-cchhhcCCCCCCEEEccCCCc-cCC---cccccCCc---cccccccccCcCCC----CCCCCcEEecCC
Q 020571            1 MNLVENKLES-LPASIGCLSSLEFLHLTRNNL-SLP---ELPVLLSH---IEARNCKQLQSLPE----LPSCPEELDTSI   68 (324)
Q Consensus         1 ~~L~~~~l~~-lP~~i~~l~~L~~L~L~~n~~-~lP---~~i~~L~~---L~l~~C~~L~~lP~----lp~sL~~L~~~~   68 (324)
                      |+|++|.+.. +|..++.+++|+.|+|++|.+ .+|   ..+..+++   |+|++|.....+|.    ..++|+.|++++
T Consensus       329 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~  408 (520)
T 2z7x_B          329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSS  408 (520)
T ss_dssp             EECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCS
T ss_pred             EEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcC
Confidence            4677777765 777788888888888888877 654   45666655   77777654443653    236777777777


Q ss_pred             CCCCCccCCCCCcccccceeccCC
Q 020571           69 LESLSKHFRPTASRKLTYFMFTNC   92 (324)
Q Consensus        69 C~sL~~~~~~~~~~~~~~l~~~nC   92 (324)
                      |.--..++.... ..+..|++++|
T Consensus       409 N~l~~~~~~~l~-~~L~~L~Ls~N  431 (520)
T 2z7x_B          409 NILTDTIFRCLP-PRIKVLDLHSN  431 (520)
T ss_dssp             SCCCGGGGGSCC-TTCCEEECCSS
T ss_pred             CCCCcchhhhhc-ccCCEEECCCC
Confidence            643333333221 34455666555

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=97.57  E-value=7.6e-05  Score=69.47  Aligned_cols=94  Identities=16%  Similarity=0.099  Sum_probs=72.3

Q ss_pred             CeecCCCCCccch-hhcCCCCCCEEEccCCCc-cCC-cccccCCc---cccccccccCcCCC----CCCCCcEEecCCCC
Q 020571            1 MNLVENKLESLPA-SIGCLSSLEFLHLTRNNL-SLP-ELPVLLSH---IEARNCKQLQSLPE----LPSCPEELDTSILE   70 (324)
Q Consensus         1 ~~L~~~~l~~lP~-~i~~l~~L~~L~L~~n~~-~lP-~~i~~L~~---L~l~~C~~L~~lP~----lp~sL~~L~~~~C~   70 (324)
                      |+|++|+|+.+|. .++.+++|+.|+|++|.+ .++ ..+.++++   |+|+++ ++..+|.    -.++|+.|++.++ 
T Consensus        57 L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n-  134 (353)
T 2z80_A           57 LDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN-YLSNLSSSWFKPLSSLTFLNLLGN-  134 (353)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSSCCHHHHTTCTTCSEEECTTC-
T ss_pred             EECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC-cCCcCCHhHhCCCccCCEEECCCC-
Confidence            5789999998887 789999999999999999 764 56877776   999875 5667764    2478999999986 


Q ss_pred             CCCccCC--CC-CcccccceeccCCcccc
Q 020571           71 SLSKHFR--PT-ASRKLTYFMFTNCLKLN   96 (324)
Q Consensus        71 sL~~~~~--~~-~~~~~~~l~~~nC~~L~   96 (324)
                      .+..++.  .+ ...++..|++.+|..+.
T Consensus       135 ~l~~l~~~~~~~~l~~L~~L~l~~n~~~~  163 (353)
T 2z80_A          135 PYKTLGETSLFSHLTKLQILRVGNMDTFT  163 (353)
T ss_dssp             CCSSSCSSCSCTTCTTCCEEEEEESSSCC
T ss_pred             CCcccCchhhhccCCCCcEEECCCCcccc
Confidence            6777765  22 23566788888875443

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=97.56  E-value=0.00021  Score=60.93  Aligned_cols=87  Identities=20%  Similarity=0.210  Sum_probs=63.3

Q ss_pred             CeecCCCCCccchhhcCCCCCCEEEccCCCc-cCCcc--cccCCc---cccccccccCcC-CCC---CCCCcEEecCCCC
Q 020571            1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPEL--PVLLSH---IEARNCKQLQSL-PEL---PSCPEELDTSILE   70 (324)
Q Consensus         1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~~--i~~L~~---L~l~~C~~L~~l-P~l---p~sL~~L~~~~C~   70 (324)
                      +++++++|+++|..+..  +|+.|+|++|.+ .+|..  +..+++   |+|+++ .+..+ |..   .++|+.|+++++ 
T Consensus        13 l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N-   88 (192)
T 1w8a_A           13 VDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAFEGASHIQELQLGEN-   88 (192)
T ss_dssp             EECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSC-
T ss_pred             EEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCC-CCCCcCHhHcCCcccCCEEECCCC-
Confidence            47889999999987764  999999999999 88864  777776   999985 45555 432   378999999985 


Q ss_pred             CCCccCCC-C-CcccccceeccC
Q 020571           71 SLSKHFRP-T-ASRKLTYFMFTN   91 (324)
Q Consensus        71 sL~~~~~~-~-~~~~~~~l~~~n   91 (324)
                      .|..++.. + ....+..|++++
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~  111 (192)
T 1w8a_A           89 KIKEISNKMFLGLHQLKTLNLYD  111 (192)
T ss_dssp             CCCEECSSSSTTCTTCCEEECCS
T ss_pred             cCCccCHHHhcCCCCCCEEECCC
Confidence            56666543 2 223444555543

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=97.55  E-value=7.4e-05  Score=73.07  Aligned_cols=68  Identities=21%  Similarity=0.229  Sum_probs=44.4

Q ss_pred             CeecCCCCCccc-hhhcCCCCCCEEEccCCCc-cC-CcccccCCc---cccccccccCcCCCC-CCCCcEEecCCC
Q 020571            1 MNLVENKLESLP-ASIGCLSSLEFLHLTRNNL-SL-PELPVLLSH---IEARNCKQLQSLPEL-PSCPEELDTSIL   69 (324)
Q Consensus         1 ~~L~~~~l~~lP-~~i~~l~~L~~L~L~~n~~-~l-P~~i~~L~~---L~l~~C~~L~~lP~l-p~sL~~L~~~~C   69 (324)
                      |+|++|.|..+| ..+..+++|++|+|++|.+ .+ |..+.++++   |+|+++ ++..+|.. ..+|+.|++++|
T Consensus        26 L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~l~~L~~L~L~~N  100 (520)
T 2z7x_B           26 LNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN-KLVKISCHPTVNLKHLDLSFN  100 (520)
T ss_dssp             EECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS-CCCEEECCCCCCCSEEECCSS
T ss_pred             EECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC-ceeecCccccCCccEEeccCC
Confidence            356667666655 4667777777777777777 55 556666665   777764 45566643 356777777775

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=97.54  E-value=9.9e-05  Score=61.87  Aligned_cols=73  Identities=18%  Similarity=0.170  Sum_probs=48.7

Q ss_pred             CeecCCCCCccchhhcCCCCCCEEEccCCCc-cCCccc-ccCCc---cccccccccCcCCC---C--CCCCcEEecCCCC
Q 020571            1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELP-VLLSH---IEARNCKQLQSLPE---L--PSCPEELDTSILE   70 (324)
Q Consensus         1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~~i-~~L~~---L~l~~C~~L~~lP~---l--p~sL~~L~~~~C~   70 (324)
                      |+|++|.|+.+ ..++.+++|++|+|++|.+ .+|..+ ..+++   |+|+++ .+..+|.   +  .++|+.|++.++ 
T Consensus        47 L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N-  123 (176)
T 1a9n_A           47 IDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRN-  123 (176)
T ss_dssp             EECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSS-
T ss_pred             EECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCC-
Confidence            46777777777 4677788888888888888 777554 55555   777764 4566665   1  256777777775 


Q ss_pred             CCCccC
Q 020571           71 SLSKHF   76 (324)
Q Consensus        71 sL~~~~   76 (324)
                      .+..++
T Consensus       124 ~i~~~~  129 (176)
T 1a9n_A          124 PVTNKK  129 (176)
T ss_dssp             GGGGST
T ss_pred             CCCCcH
Confidence            344443

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=97.53  E-value=7.1e-05  Score=68.09  Aligned_cols=91  Identities=18%  Similarity=0.125  Sum_probs=55.3

Q ss_pred             CeecCCCCCcc---chhhcCCCCCCEEEccCCCc-cCCcccccCCc---cccccccccCcCCC---C--CCCCcEEecCC
Q 020571            1 MNLVENKLESL---PASIGCLSSLEFLHLTRNNL-SLPELPVLLSH---IEARNCKQLQSLPE---L--PSCPEELDTSI   68 (324)
Q Consensus         1 ~~L~~~~l~~l---P~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~---L~l~~C~~L~~lP~---l--p~sL~~L~~~~   68 (324)
                      ++|++|.|..+   |..+..+++|++|+|++|.+ .+|..+..+++   |+++++ .+..++.   +  .++|+.|++.+
T Consensus        57 L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~  135 (306)
T 2z66_A           57 LSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISH  135 (306)
T ss_dssp             EECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTS-EEESSTTTTTTTTCTTCCEEECTT
T ss_pred             EECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEECCCC-cccccccchhhhhccCCCEEECCC
Confidence            46777777644   66777788888888888888 88877776665   777764 3444443   1  25777777777


Q ss_pred             CCCCCccCCCCC-cccccceeccCC
Q 020571           69 LESLSKHFRPTA-SRKLTYFMFTNC   92 (324)
Q Consensus        69 C~sL~~~~~~~~-~~~~~~l~~~nC   92 (324)
                      |.--...+..+. ...+..|.+.+|
T Consensus       136 n~l~~~~~~~~~~l~~L~~L~l~~n  160 (306)
T 2z66_A          136 THTRVAFNGIFNGLSSLEVLKMAGN  160 (306)
T ss_dssp             SCCEECSTTTTTTCTTCCEEECTTC
T ss_pred             CcCCccchhhcccCcCCCEEECCCC
Confidence            632222222221 234445555554

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=97.51  E-value=0.00032  Score=62.84  Aligned_cols=90  Identities=30%  Similarity=0.313  Sum_probs=63.5

Q ss_pred             CeecCCCCCccch-hhcCCCCCCEEEccCCCc-cCCccc-ccCCc---cccccccccCcCCC----CCCCCcEEecCCCC
Q 020571            1 MNLVENKLESLPA-SIGCLSSLEFLHLTRNNL-SLPELP-VLLSH---IEARNCKQLQSLPE----LPSCPEELDTSILE   70 (324)
Q Consensus         1 ~~L~~~~l~~lP~-~i~~l~~L~~L~L~~n~~-~lP~~i-~~L~~---L~l~~C~~L~~lP~----lp~sL~~L~~~~C~   70 (324)
                      |+|++|+|..+|. .++.+++|++|+|++|.+ .+|..+ .++++   |+|+++ .+..+|.    -.++|+.|++.++ 
T Consensus        42 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-  119 (270)
T 2o6q_A           42 LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN-KLQALPIGVFDQLVNLAELRLDRN-  119 (270)
T ss_dssp             EECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS-CCCCCCTTTTTTCSSCCEEECCSS-
T ss_pred             EECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC-cCCcCCHhHcccccCCCEEECCCC-
Confidence            4788889988876 688899999999999999 888754 55655   888874 4666663    2367888888875 


Q ss_pred             CCCccCCC-C-CcccccceeccCC
Q 020571           71 SLSKHFRP-T-ASRKLTYFMFTNC   92 (324)
Q Consensus        71 sL~~~~~~-~-~~~~~~~l~~~nC   92 (324)
                      .+..++.. + ...++..|+++++
T Consensus       120 ~l~~~~~~~~~~l~~L~~L~Ls~n  143 (270)
T 2o6q_A          120 QLKSLPPRVFDSLTKLTYLSLGYN  143 (270)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             ccCeeCHHHhCcCcCCCEEECCCC
Confidence            45555532 1 2345556666655

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=97.50  E-value=0.00019  Score=66.17  Aligned_cols=90  Identities=20%  Similarity=0.218  Sum_probs=57.7

Q ss_pred             CeecCCCCCccc-hhhcCCCCCCEEEccCCCc-cC-CcccccCCc---cccccccccCcCCC-CCCCCcEEecCCCCCCC
Q 020571            1 MNLVENKLESLP-ASIGCLSSLEFLHLTRNNL-SL-PELPVLLSH---IEARNCKQLQSLPE-LPSCPEELDTSILESLS   73 (324)
Q Consensus         1 ~~L~~~~l~~lP-~~i~~l~~L~~L~L~~n~~-~l-P~~i~~L~~---L~l~~C~~L~~lP~-lp~sL~~L~~~~C~sL~   73 (324)
                      ++|++|+|..+| ..++.+++|+.|+|++|.+ .+ |..+.++++   |+|+++ .+..+|. ++++|+.|++.++ .+.
T Consensus        59 L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~L~~L~l~~n-~i~  136 (332)
T 2ft3_A           59 LDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN-HLVEIPPNLPSSLVELRIHDN-RIR  136 (332)
T ss_dssp             EECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS-CCCSCCSSCCTTCCEEECCSS-CCC
T ss_pred             EECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC-cCCccCccccccCCEEECCCC-ccC
Confidence            467777777664 3677788888888888888 55 566776665   777764 4566663 4477888888775 455


Q ss_pred             ccCCC-C-CcccccceeccCC
Q 020571           74 KHFRP-T-ASRKLTYFMFTNC   92 (324)
Q Consensus        74 ~~~~~-~-~~~~~~~l~~~nC   92 (324)
                      .++.. + ...++..|++.++
T Consensus       137 ~~~~~~~~~l~~L~~L~l~~n  157 (332)
T 2ft3_A          137 KVPKGVFSGLRNMNCIEMGGN  157 (332)
T ss_dssp             CCCSGGGSSCSSCCEEECCSC
T ss_pred             ccCHhHhCCCccCCEEECCCC
Confidence            55432 1 1234445555543

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=97.50  E-value=0.00011  Score=69.40  Aligned_cols=74  Identities=22%  Similarity=0.122  Sum_probs=46.0

Q ss_pred             CeecCCCCCccchhhcCCCCCCEEEccCCCc-cC-CcccccCCc---cccccccccCcCCCC---CCCCcEEecCCCCCC
Q 020571            1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-SL-PELPVLLSH---IEARNCKQLQSLPEL---PSCPEELDTSILESL   72 (324)
Q Consensus         1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~l-P~~i~~L~~---L~l~~C~~L~~lP~l---p~sL~~L~~~~C~sL   72 (324)
                      |+|++|.+..++ .++.+++|+.|+|++|.+ .+ |..+..+++   |+|++| ++..+|..   .++|+.|++++| .+
T Consensus       231 L~l~~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~n-~l  307 (390)
T 3o6n_A          231 LKLQHNNLTDTA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHN-HL  307 (390)
T ss_dssp             EECCSSCCCCCG-GGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSS-CCCEEECSSSCCTTCCEEECCSS-CC
T ss_pred             EECCCCCCcccH-HHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCC-cCcccCcccCCCCCCCEEECCCC-cc
Confidence            356677776654 567777777777777777 44 566666655   777663 45555542   256777777765 45


Q ss_pred             CccCC
Q 020571           73 SKHFR   77 (324)
Q Consensus        73 ~~~~~   77 (324)
                      ..++.
T Consensus       308 ~~~~~  312 (390)
T 3o6n_A          308 LHVER  312 (390)
T ss_dssp             CCCGG
T ss_pred             eecCc
Confidence            55543

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=97.50  E-value=0.00011  Score=68.67  Aligned_cols=75  Identities=24%  Similarity=0.175  Sum_probs=36.1

Q ss_pred             eecCCCCCccchhhcCCCCCCEEEccC-CCc-cCCcc-cccCCc---cccccccccCcCCC-CCCCCcEEecCCCCCCCc
Q 020571            2 NLVENKLESLPASIGCLSSLEFLHLTR-NNL-SLPEL-PVLLSH---IEARNCKQLQSLPE-LPSCPEELDTSILESLSK   74 (324)
Q Consensus         2 ~L~~~~l~~lP~~i~~l~~L~~L~L~~-n~~-~lP~~-i~~L~~---L~l~~C~~L~~lP~-lp~sL~~L~~~~C~sL~~   74 (324)
                      +|++|+|+.||..+....+|+.|++++ |.+ .||.. +..+++   |+|+++ +++++|. ...+|+.|.+.+|..|+.
T Consensus       160 ~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~~~~~~L~~L~~l~~~~l~~  238 (350)
T 4ay9_X          160 WLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPSYGLENLKKLRARSTYNLKK  238 (350)
T ss_dssp             ECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCSSSCTTCCEEECTTCTTCCC
T ss_pred             ccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccChhhhccchHhhhccCCCcCc
Confidence            344555555555554455555555543 334 55532 233333   555542 4555543 234555555555555555


Q ss_pred             cCC
Q 020571           75 HFR   77 (324)
Q Consensus        75 ~~~   77 (324)
                      +|.
T Consensus       239 lP~  241 (350)
T 4ay9_X          239 LPT  241 (350)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            553

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=97.48  E-value=0.00013  Score=66.39  Aligned_cols=47  Identities=23%  Similarity=0.459  Sum_probs=22.5

Q ss_pred             eecCCCCCc-cchhhcCCCCCCEEEccCCCc-c--CCcccccCCc---cccccc
Q 020571            2 NLVENKLES-LPASIGCLSSLEFLHLTRNNL-S--LPELPVLLSH---IEARNC   48 (324)
Q Consensus         2 ~L~~~~l~~-lP~~i~~l~~L~~L~L~~n~~-~--lP~~i~~L~~---L~l~~C   48 (324)
                      +|++|.+.. .|..++.+++|+.|+|++|.+ .  +|..+..+++   |+|++|
T Consensus       132 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n  185 (306)
T 2z66_A          132 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC  185 (306)
T ss_dssp             ECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred             ECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCC
Confidence            444554442 233344555555555555555 3  4544444443   555543

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=97.48  E-value=0.0002  Score=64.08  Aligned_cols=68  Identities=25%  Similarity=0.276  Sum_probs=44.8

Q ss_pred             CeecCCCCCccch-hhcCCCCCCEEEccCCCc-cCCc-ccccCCc---cccccccccCcCC-C-C--CCCCcEEecCCC
Q 020571            1 MNLVENKLESLPA-SIGCLSSLEFLHLTRNNL-SLPE-LPVLLSH---IEARNCKQLQSLP-E-L--PSCPEELDTSIL   69 (324)
Q Consensus         1 ~~L~~~~l~~lP~-~i~~l~~L~~L~L~~n~~-~lP~-~i~~L~~---L~l~~C~~L~~lP-~-l--p~sL~~L~~~~C   69 (324)
                      |+|++|+|+.+|. .++.+++|++|+|++|.+ .+|. .+.++++   |+|+++. +..++ . +  .++|+.|++.++
T Consensus        33 L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n  110 (276)
T 2z62_A           33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVET  110 (276)
T ss_dssp             EECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTS
T ss_pred             EECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc-cCccChhhhcCCccccEEECCCC
Confidence            4677788877765 677788888888888888 6654 5666555   7777643 33333 2 1  256777777664

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=97.47  E-value=0.00033  Score=63.02  Aligned_cols=90  Identities=27%  Similarity=0.250  Sum_probs=65.6

Q ss_pred             CeecCCCCCcc-chhhcCCCCCCEEEccCCC-c-cC-CcccccCCc---cccccccccCcC-CCC---CCCCcEEecCCC
Q 020571            1 MNLVENKLESL-PASIGCLSSLEFLHLTRNN-L-SL-PELPVLLSH---IEARNCKQLQSL-PEL---PSCPEELDTSIL   69 (324)
Q Consensus         1 ~~L~~~~l~~l-P~~i~~l~~L~~L~L~~n~-~-~l-P~~i~~L~~---L~l~~C~~L~~l-P~l---p~sL~~L~~~~C   69 (324)
                      |+|++|.|..+ |..++.+++|++|+|++|. + .+ |..+..+++   |+|++|. +..+ |..   .++|+.|++.++
T Consensus        61 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n  139 (285)
T 1ozn_A           61 LWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDN  139 (285)
T ss_dssp             EECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred             EECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCc-CCEECHhHhhCCcCCCEEECCCC
Confidence            47888989877 7789999999999999997 7 77 667777776   9998865 4444 432   378999999986


Q ss_pred             CCCCccCCC-C-CcccccceeccCC
Q 020571           70 ESLSKHFRP-T-ASRKLTYFMFTNC   92 (324)
Q Consensus        70 ~sL~~~~~~-~-~~~~~~~l~~~nC   92 (324)
                       .+..++.. + ...++..|+++++
T Consensus       140 -~l~~~~~~~~~~l~~L~~L~l~~n  163 (285)
T 1ozn_A          140 -ALQALPDDTFRDLGNLTHLFLHGN  163 (285)
T ss_dssp             -CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             -cccccCHhHhccCCCccEEECCCC
Confidence             56666543 2 2345566777665

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=97.47  E-value=0.00024  Score=71.15  Aligned_cols=68  Identities=19%  Similarity=0.202  Sum_probs=40.9

Q ss_pred             CeecCCCCCccch-hhcCCCCCCEEEccCCCc-cCCc-ccccCCc---cccccccccCcCCCC----CCCCcEEecCCC
Q 020571            1 MNLVENKLESLPA-SIGCLSSLEFLHLTRNNL-SLPE-LPVLLSH---IEARNCKQLQSLPEL----PSCPEELDTSIL   69 (324)
Q Consensus         1 ~~L~~~~l~~lP~-~i~~l~~L~~L~L~~n~~-~lP~-~i~~L~~---L~l~~C~~L~~lP~l----p~sL~~L~~~~C   69 (324)
                      |+|++|.|..+|. .++.+++|+.|+|++|.+ .+|. .++++++   |+|++| .+..+|.-    .++|+.|++++|
T Consensus        80 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N  157 (597)
T 3oja_B           80 LNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNN  157 (597)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             EECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCC-CCCCCCHHHhccCCCCCEEEeeCC
Confidence            3566666665543 666677777777777777 5554 3455554   666664 45555531    356677777665

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=97.47  E-value=0.00014  Score=75.14  Aligned_cols=93  Identities=19%  Similarity=0.159  Sum_probs=62.2

Q ss_pred             CeecCCCCC-ccchhhcCCCCCCEEEccCCCc--cCCcccccCCc---cccccccccCcCCCC---CCCCcEEecCCCCC
Q 020571            1 MNLVENKLE-SLPASIGCLSSLEFLHLTRNNL--SLPELPVLLSH---IEARNCKQLQSLPEL---PSCPEELDTSILES   71 (324)
Q Consensus         1 ~~L~~~~l~-~lP~~i~~l~~L~~L~L~~n~~--~lP~~i~~L~~---L~l~~C~~L~~lP~l---p~sL~~L~~~~C~s   71 (324)
                      |+|++|.+. .+|..++.+++|+.|+|++|.+  .+|..+..+++   |+|++|+....+|..   .++|+.|++.+|.-
T Consensus       423 L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l  502 (768)
T 3rgz_A          423 LHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRL  502 (768)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC
T ss_pred             EECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCcc
Confidence            466777765 6777788888888888888877  67777777666   777777665566643   36777788877754


Q ss_pred             CCccCCCCCc-ccccceeccCCc
Q 020571           72 LSKHFRPTAS-RKLTYFMFTNCL   93 (324)
Q Consensus        72 L~~~~~~~~~-~~~~~l~~~nC~   93 (324)
                      ...+|..+.. ..+..|++.+|.
T Consensus       503 ~~~~p~~~~~l~~L~~L~L~~N~  525 (768)
T 3rgz_A          503 TGEIPKWIGRLENLAILKLSNNS  525 (768)
T ss_dssp             CSCCCGGGGGCTTCCEEECCSSC
T ss_pred             CCcCChHHhcCCCCCEEECCCCc
Confidence            4455554332 345566666653

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=97.46  E-value=0.00017  Score=67.64  Aligned_cols=67  Identities=25%  Similarity=0.274  Sum_probs=33.7

Q ss_pred             CeecCCCCCccchhhc--CCCCCCEEEccCCCc-cCCc-ccccCCc---cccccccccCcCCCC----CCCCcEEecCC
Q 020571            1 MNLVENKLESLPASIG--CLSSLEFLHLTRNNL-SLPE-LPVLLSH---IEARNCKQLQSLPEL----PSCPEELDTSI   68 (324)
Q Consensus         1 ~~L~~~~l~~lP~~i~--~l~~L~~L~L~~n~~-~lP~-~i~~L~~---L~l~~C~~L~~lP~l----p~sL~~L~~~~   68 (324)
                      |+|++|+|..+|....  .+++|+.|+|++|.+ .+|. .+.++++   |+|+++ +|..+|.-    ..+|+.|++++
T Consensus        44 L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~  121 (361)
T 2xot_A           44 LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN-HLHTLDEFLFSDLQALEVLLLYN  121 (361)
T ss_dssp             EECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCS
T ss_pred             EECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC-cCCcCCHHHhCCCcCCCEEECCC
Confidence            3556666665554432  566666666666666 5543 3444444   555553 34444321    14445554444

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=97.46  E-value=0.00027  Score=68.73  Aligned_cols=64  Identities=19%  Similarity=0.203  Sum_probs=41.7

Q ss_pred             CeecCCCCCccchhhcCCCCCCEEEccCCCc-cCCcccccCCc---cccccccccCcCCCC--CCCCcEEecCCC
Q 020571            1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSH---IEARNCKQLQSLPEL--PSCPEELDTSIL   69 (324)
Q Consensus         1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~---L~l~~C~~L~~lP~l--p~sL~~L~~~~C   69 (324)
                      |+|++|.|..+| .++.+++|++|+|++|.+ .+|  ++.+++   |+|++|. +..+| +  .++|+.|+++++
T Consensus        47 L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~-l~~~~-~~~l~~L~~L~L~~N  116 (457)
T 3bz5_A           47 LDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNK-LTNLD-VTPLTKLTYLNCDTN  116 (457)
T ss_dssp             EECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSC-CSCCC-CTTCTTCCEEECCSS
T ss_pred             EEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCC-Cceee-cCCCCcCCEEECCCC
Confidence            467777777776 577788888888888877 776  555554   6776643 44443 2  245666666554

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=97.44  E-value=0.00019  Score=67.24  Aligned_cols=90  Identities=20%  Similarity=0.179  Sum_probs=61.1

Q ss_pred             CeecCCCCCccch-hhcCCCCCCEEEccCCCc-cCCc-ccccCCc---cccccccccCcCC-CC---CCCCcEEecCCCC
Q 020571            1 MNLVENKLESLPA-SIGCLSSLEFLHLTRNNL-SLPE-LPVLLSH---IEARNCKQLQSLP-EL---PSCPEELDTSILE   70 (324)
Q Consensus         1 ~~L~~~~l~~lP~-~i~~l~~L~~L~L~~n~~-~lP~-~i~~L~~---L~l~~C~~L~~lP-~l---p~sL~~L~~~~C~   70 (324)
                      |+|++|+|..+|. .+..+++|+.|+|++|.+ .+|. .+..+++   |+|++++ +..++ ..   ..+|+.|+++++ 
T Consensus        69 L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~N-  146 (361)
T 2xot_A           69 LLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQN-  146 (361)
T ss_dssp             EECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS-
T ss_pred             EECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCc-ccEECHHHhCCcccCCEEECCCC-
Confidence            4678888887774 578888999999999988 7765 4666665   8888754 44443 21   367888888885 


Q ss_pred             CCCccCCCC-----CcccccceeccCC
Q 020571           71 SLSKHFRPT-----ASRKLTYFMFTNC   92 (324)
Q Consensus        71 sL~~~~~~~-----~~~~~~~l~~~nC   92 (324)
                      .|..++...     ....+..|+++++
T Consensus       147 ~l~~l~~~~~~~~~~l~~L~~L~L~~N  173 (361)
T 2xot_A          147 QISRFPVELIKDGNKLPKLMLLDLSSN  173 (361)
T ss_dssp             CCCSCCGGGTC----CTTCCEEECCSS
T ss_pred             cCCeeCHHHhcCcccCCcCCEEECCCC
Confidence            676666542     1344556666553

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=97.44  E-value=0.00025  Score=70.59  Aligned_cols=68  Identities=25%  Similarity=0.287  Sum_probs=51.7

Q ss_pred             CeecCCCCCccch-hhcCCCCCCEEEccCCCc-cC-CcccccCCc---cccccccccCcC-CCC---CCCCcEEecCCC
Q 020571            1 MNLVENKLESLPA-SIGCLSSLEFLHLTRNNL-SL-PELPVLLSH---IEARNCKQLQSL-PEL---PSCPEELDTSIL   69 (324)
Q Consensus         1 ~~L~~~~l~~lP~-~i~~l~~L~~L~L~~n~~-~l-P~~i~~L~~---L~l~~C~~L~~l-P~l---p~sL~~L~~~~C   69 (324)
                      |+|++|.|..+|. .++.+++|++|+|++|.+ .+ |..+.++++   |+|++|. +..+ |+.   ..+|+.|++++|
T Consensus        37 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~L~~n  114 (606)
T 3vq2_A           37 IDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP-IQSFSPGSFSGLTSLENLVAVET  114 (606)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCCCCTTSSTTCTTCCEEECTTS
T ss_pred             EECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCc-ccccChhhcCCcccCCEEEccCC
Confidence            4788888887765 788999999999999999 66 556777776   8898865 4444 542   367888888775

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=97.43  E-value=0.00034  Score=65.82  Aligned_cols=67  Identities=19%  Similarity=0.223  Sum_probs=32.3

Q ss_pred             eecCCCCCccch-hhcCCCCCCEEEccCCCc-cCCc-ccccCCc---cccccccccCcCCC--C--CCCCcEEecCCC
Q 020571            2 NLVENKLESLPA-SIGCLSSLEFLHLTRNNL-SLPE-LPVLLSH---IEARNCKQLQSLPE--L--PSCPEELDTSIL   69 (324)
Q Consensus         2 ~L~~~~l~~lP~-~i~~l~~L~~L~L~~n~~-~lP~-~i~~L~~---L~l~~C~~L~~lP~--l--p~sL~~L~~~~C   69 (324)
                      +|++|.|..+|. .++.+++|++|+|++|.+ .+|. .+.++++   |+|++| .+..+|.  +  .++|+.|+++++
T Consensus        75 ~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n  151 (390)
T 3o6n_A           75 NLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNN  151 (390)
T ss_dssp             ECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             ECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCC-ccCcCCHHHhcCCCCCcEEECCCC
Confidence            445555554443 455555555555555555 4432 3444443   555543 3444443  1  245555555554

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=97.43  E-value=0.00028  Score=63.16  Aligned_cols=84  Identities=15%  Similarity=0.148  Sum_probs=54.9

Q ss_pred             CCCCCccchhhcCCCCCCEEEccCCCc-cCCc-ccccCCc---cccccccccCcCCC--C--CCCCcEEecCCCCCCCcc
Q 020571            5 ENKLESLPASIGCLSSLEFLHLTRNNL-SLPE-LPVLLSH---IEARNCKQLQSLPE--L--PSCPEELDTSILESLSKH   75 (324)
Q Consensus         5 ~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~-~i~~L~~---L~l~~C~~L~~lP~--l--p~sL~~L~~~~C~sL~~~   75 (324)
                      +.++.++|..+.  ++|+.|+|++|++ .+|. .+.++++   |+|++| .+..++.  +  .++|+.|+++++ .+..+
T Consensus        16 ~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~   91 (276)
T 2z62_A           16 ELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGN-PIQSL   91 (276)
T ss_dssp             TSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTC-CCCEE
T ss_pred             CCCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCC-ccCcc
Confidence            345678887664  5789999999998 7775 6766665   888886 5555553  2  368889998886 45554


Q ss_pred             CC-CCC-cccccceeccCC
Q 020571           76 FR-PTA-SRKLTYFMFTNC   92 (324)
Q Consensus        76 ~~-~~~-~~~~~~l~~~nC   92 (324)
                      +. .+. ...+..|.+.++
T Consensus        92 ~~~~~~~l~~L~~L~l~~n  110 (276)
T 2z62_A           92 ALGAFSGLSSLQKLVAVET  110 (276)
T ss_dssp             CTTTTTTCTTCCEEECTTS
T ss_pred             ChhhhcCCccccEEECCCC
Confidence            42 222 234455555544

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=97.42  E-value=0.00026  Score=59.12  Aligned_cols=68  Identities=28%  Similarity=0.365  Sum_probs=54.7

Q ss_pred             CeecCCCCCccchh-hcCCCCCCEEEccCCCc-cCCcc-cccCCc---cccccccccCcCCCC----CCCCcEEecCCC
Q 020571            1 MNLVENKLESLPAS-IGCLSSLEFLHLTRNNL-SLPEL-PVLLSH---IEARNCKQLQSLPEL----PSCPEELDTSIL   69 (324)
Q Consensus         1 ~~L~~~~l~~lP~~-i~~l~~L~~L~L~~n~~-~lP~~-i~~L~~---L~l~~C~~L~~lP~l----p~sL~~L~~~~C   69 (324)
                      |+|++|.|..+|.. ++.+++|+.|+|++|.+ .+|.. +..+++   |+|+++ .+..+|.-    .++|+.|++.++
T Consensus        57 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N  134 (177)
T 2o6r_A           57 LSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTN  134 (177)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             EECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCC
Confidence            57899999998876 58999999999999999 88875 566665   999985 67777752    367888888875

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=97.41  E-value=0.00036  Score=64.28  Aligned_cols=75  Identities=17%  Similarity=0.155  Sum_probs=56.1

Q ss_pred             CeecCCCCCccc-hhhcCCCCCCEEEccCCCc-cCCc-ccccCCc---cccccccccCcCCCC---CCCCcEEecCCCCC
Q 020571            1 MNLVENKLESLP-ASIGCLSSLEFLHLTRNNL-SLPE-LPVLLSH---IEARNCKQLQSLPEL---PSCPEELDTSILES   71 (324)
Q Consensus         1 ~~L~~~~l~~lP-~~i~~l~~L~~L~L~~n~~-~lP~-~i~~L~~---L~l~~C~~L~~lP~l---p~sL~~L~~~~C~s   71 (324)
                      ++|++|.+..++ ..+..+++|+.|+|++|.+ .+|. .+..+++   |+|++| ++..+|.-   .++|+.|+++++ .
T Consensus       198 L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N-~  275 (332)
T 2ft3_A          198 LHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN-KLSRVPAGLPDLKLLQVVYLHTN-N  275 (332)
T ss_dssp             CBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSS-CCCBCCTTGGGCTTCCEEECCSS-C
T ss_pred             EECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCC-cCeecChhhhcCccCCEEECCCC-C
Confidence            578888888766 5788889999999999998 7764 6776665   888875 56677753   367888988885 5


Q ss_pred             CCccCC
Q 020571           72 LSKHFR   77 (324)
Q Consensus        72 L~~~~~   77 (324)
                      +..++.
T Consensus       276 l~~~~~  281 (332)
T 2ft3_A          276 ITKVGV  281 (332)
T ss_dssp             CCBCCT
T ss_pred             CCccCh
Confidence            666653

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=97.39  E-value=0.00028  Score=68.26  Aligned_cols=68  Identities=25%  Similarity=0.287  Sum_probs=46.6

Q ss_pred             CeecCCCCCcc-chhhcCCCCCCEEEccCCCc-cC-CcccccCCc---cccccccccCcCCCC----CCCCcEEecCCC
Q 020571            1 MNLVENKLESL-PASIGCLSSLEFLHLTRNNL-SL-PELPVLLSH---IEARNCKQLQSLPEL----PSCPEELDTSIL   69 (324)
Q Consensus         1 ~~L~~~~l~~l-P~~i~~l~~L~~L~L~~n~~-~l-P~~i~~L~~---L~l~~C~~L~~lP~l----p~sL~~L~~~~C   69 (324)
                      |+|++|+|..+ |..+..+++|+.|+|++|.+ .+ |..+.++++   |+|+++ ++..+|.-    .++|+.|+++++
T Consensus        37 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n  114 (477)
T 2id5_A           37 LDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN-RLKLIPLGVFTGLSNLTKLDISEN  114 (477)
T ss_dssp             EECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCTTSSTTCTTCCEEECTTS
T ss_pred             EECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC-cCCccCcccccCCCCCCEEECCCC
Confidence            46777777766 45677788888888888887 55 666776665   777764 46666631    266777777764

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=97.38  E-value=0.00025  Score=69.70  Aligned_cols=30  Identities=30%  Similarity=0.392  Sum_probs=14.2

Q ss_pred             eecCCCCCccch-hhcCCCCCCEEEccCCCc
Q 020571            2 NLVENKLESLPA-SIGCLSSLEFLHLTRNNL   31 (324)
Q Consensus         2 ~L~~~~l~~lP~-~i~~l~~L~~L~L~~n~~   31 (324)
                      +|++|+|..++. .+..+++|+.|+|++|.+
T Consensus        34 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i   64 (570)
T 2z63_A           34 DLSFNPLRHLGSYSFFSFPELQVLDLSRCEI   64 (570)
T ss_dssp             ECCSCCCCEECTTTTTTCSSCCEEECTTCCC
T ss_pred             EccCCccCccChhHhhCCCCceEEECCCCcC
Confidence            444555544332 344455555555555544

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=97.37  E-value=0.00032  Score=69.54  Aligned_cols=73  Identities=23%  Similarity=0.294  Sum_probs=40.1

Q ss_pred             eecCCCCCccc-hhhcCCCCCCEEEccCCCc-cC-CcccccCCc---cccccccccCcCCCC-CCCCcEEecCCCCCCCc
Q 020571            2 NLVENKLESLP-ASIGCLSSLEFLHLTRNNL-SL-PELPVLLSH---IEARNCKQLQSLPEL-PSCPEELDTSILESLSK   74 (324)
Q Consensus         2 ~L~~~~l~~lP-~~i~~l~~L~~L~L~~n~~-~l-P~~i~~L~~---L~l~~C~~L~~lP~l-p~sL~~L~~~~C~sL~~   74 (324)
                      +|++|.|..+| ..++.+++|++|+|++|.+ .+ |..+.++++   |+|+++ ++.++|.. .++|+.|+++++ .+..
T Consensus        58 ~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~l~~L~~L~Ls~N-~l~~  135 (562)
T 3a79_B           58 SLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN-RLQNISCCPMASLRHLDLSFN-DFDV  135 (562)
T ss_dssp             ECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS-CCCEECSCCCTTCSEEECCSS-CCSB
T ss_pred             ECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC-cCCccCccccccCCEEECCCC-Cccc
Confidence            55566665554 3556666666666666666 44 444555554   666653 34555543 255666666664 3444


Q ss_pred             cC
Q 020571           75 HF   76 (324)
Q Consensus        75 ~~   76 (324)
                      ++
T Consensus       136 l~  137 (562)
T 3a79_B          136 LP  137 (562)
T ss_dssp             CC
T ss_pred             cC
Confidence            43

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=97.35  E-value=0.0002  Score=69.62  Aligned_cols=91  Identities=21%  Similarity=0.165  Sum_probs=51.2

Q ss_pred             CeecCCCCCccchhhcCCCCCCEEEccCCCc-cCCc-ccccCC----------ccccccccccCcCCCC-CCCCcEEecC
Q 020571            1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPE-LPVLLS----------HIEARNCKQLQSLPEL-PSCPEELDTS   67 (324)
Q Consensus         1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~-~i~~L~----------~L~l~~C~~L~~lP~l-p~sL~~L~~~   67 (324)
                      |+|++|.|+.+|  ++.+++|+.|+|++|.+ .+|. .+.+|.          .|++++|..+..+|.- .++|+.|+++
T Consensus       217 L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls  294 (457)
T 3bz5_A          217 LDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVT  294 (457)
T ss_dssp             EECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCT
T ss_pred             EECcCCcccccC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECC
Confidence            356667776666  66777777777777777 5552 233332          1555555555555521 2567777777


Q ss_pred             CCCCCCccCCCCCcccccceeccCCccc
Q 020571           68 ILESLSKHFRPTASRKLTYFMFTNCLKL   95 (324)
Q Consensus        68 ~C~sL~~~~~~~~~~~~~~l~~~nC~~L   95 (324)
                      +|..++.+|...  ..+..+.+++|.+|
T Consensus       295 ~n~~l~~l~~~~--~~L~~L~l~~~~~L  320 (457)
T 3bz5_A          295 HNTQLYLLDCQA--AGITELDLSQNPKL  320 (457)
T ss_dssp             TCTTCCEEECTT--CCCSCCCCTTCTTC
T ss_pred             CCcccceeccCC--CcceEechhhcccC
Confidence            776666665422  22334445555444

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=97.35  E-value=0.00033  Score=69.70  Aligned_cols=69  Identities=16%  Similarity=0.107  Sum_probs=43.8

Q ss_pred             CeecCCCCCcc-chhhcCCCCCCEEEccCCCc-cC-CcccccCCc---cccccccccCcCCC---CCCCCcEEecCCC
Q 020571            1 MNLVENKLESL-PASIGCLSSLEFLHLTRNNL-SL-PELPVLLSH---IEARNCKQLQSLPE---LPSCPEELDTSIL   69 (324)
Q Consensus         1 ~~L~~~~l~~l-P~~i~~l~~L~~L~L~~n~~-~l-P~~i~~L~~---L~l~~C~~L~~lP~---lp~sL~~L~~~~C   69 (324)
                      |+|++|.|+.+ |..++.+++|++|+|++|.+ .+ |..|.++++   |+|++|.-....|.   -..+|+.|++.+|
T Consensus        38 L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n  115 (606)
T 3t6q_A           38 LEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQT  115 (606)
T ss_dssp             EECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTS
T ss_pred             EEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeecccc
Confidence            46777777766 55777788888888888877 44 566766665   77776543333232   1355666666554

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=97.33  E-value=0.00029  Score=68.17  Aligned_cols=88  Identities=20%  Similarity=0.268  Sum_probs=55.5

Q ss_pred             CeecCCCCCccchhhcCCCCCCEEEccCCCc-cCCcccccCCc---cccccccccCcCCCC--CCCCcEEecCCCCCCCc
Q 020571            1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSH---IEARNCKQLQSLPEL--PSCPEELDTSILESLSK   74 (324)
Q Consensus         1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~---L~l~~C~~L~~lP~l--p~sL~~L~~~~C~sL~~   74 (324)
                      |+|++|.+..++. ++.+++|+.|+|++|.+ .+|. +..+++   |+|++| ++..++.+  .++|+.|++.+| .+..
T Consensus       248 L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~L~~n-~l~~  323 (466)
T 1o6v_A          248 LDLANNQISNLAP-LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNEN-QLEDISPISNLKNLTYLTLYFN-NISD  323 (466)
T ss_dssp             EECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSS-CCSCCGGGGGCTTCSEEECCSS-CCSC
T ss_pred             EECCCCccccchh-hhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCC-cccCchhhcCCCCCCEEECcCC-cCCC
Confidence            4677788877775 77888888888888888 7776 655555   777765 34555433  267777777776 3443


Q ss_pred             cCCCCCcccccceeccCC
Q 020571           75 HFRPTASRKLTYFMFTNC   92 (324)
Q Consensus        75 ~~~~~~~~~~~~l~~~nC   92 (324)
                      ++.......+..|.+.+|
T Consensus       324 ~~~~~~l~~L~~L~l~~n  341 (466)
T 1o6v_A          324 ISPVSSLTKLQRLFFYNN  341 (466)
T ss_dssp             CGGGGGCTTCCEEECCSS
T ss_pred             chhhccCccCCEeECCCC
Confidence            332222234455666555

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=97.32  E-value=2.6e-06  Score=73.15  Aligned_cols=67  Identities=18%  Similarity=0.229  Sum_probs=51.2

Q ss_pred             CCCccchhhcCCCCCCEEEccCCCc-cCCcccccCCc---cccccccccCcCCCCC---CCCcEEecCCCCCCCccC
Q 020571            7 KLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSH---IEARNCKQLQSLPELP---SCPEELDTSILESLSKHF   76 (324)
Q Consensus         7 ~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~---L~l~~C~~L~~lP~lp---~sL~~L~~~~C~sL~~~~   76 (324)
                      .|+.+|..++.+++|+.|+|++|.+ .+| .+.++++   |+|++| .+..+|...   ++|+.|++++| .+..++
T Consensus        36 ~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~~N-~l~~l~  109 (198)
T 1ds9_A           36 PIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISYN-QIASLS  109 (198)
T ss_dssp             TCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEEEE-ECCCHH
T ss_pred             cHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCC-CcccccchhhcCCcCCEEECcCC-cCCcCC
Confidence            4566777899999999999999999 988 7777766   888875 566777643   57888888875 555554

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=97.32  E-value=0.0003  Score=65.14  Aligned_cols=68  Identities=18%  Similarity=0.141  Sum_probs=54.1

Q ss_pred             CeecC-CCCCccc-hhhcCCCCCCEEEccCCCc-cCCc-ccccCCc---cccccccccCcCCCCC---CCCcEEecCCC
Q 020571            1 MNLVE-NKLESLP-ASIGCLSSLEFLHLTRNNL-SLPE-LPVLLSH---IEARNCKQLQSLPELP---SCPEELDTSIL   69 (324)
Q Consensus         1 ~~L~~-~~l~~lP-~~i~~l~~L~~L~L~~n~~-~lP~-~i~~L~~---L~l~~C~~L~~lP~lp---~sL~~L~~~~C   69 (324)
                      |+|++ |.|..+| ..++.|++|+.|+|++|.| .+|. .|.+|++   |+|++ ++|..+|.-.   .+|+.|++.+.
T Consensus        36 L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~~~L~~l~l~~N  113 (347)
T 2ifg_A           36 LYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF-NALESLSWKTVQGLSLQELVLSGN  113 (347)
T ss_dssp             EECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS-SCCSCCCSTTTCSCCCCEEECCSS
T ss_pred             EEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC-CccceeCHHHcccCCceEEEeeCC
Confidence            57886 8999888 4689999999999999999 7764 6677777   99997 6788887421   23888888774

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=97.30  E-value=0.00042  Score=68.94  Aligned_cols=74  Identities=22%  Similarity=0.128  Sum_probs=45.5

Q ss_pred             eecCCCCCccchh-hcCCCCCCEEEccCCCc-cCCcccccCCc---cccccccccCcCCCC---CCCCcEEecCCCCCCC
Q 020571            2 NLVENKLESLPAS-IGCLSSLEFLHLTRNNL-SLPELPVLLSH---IEARNCKQLQSLPEL---PSCPEELDTSILESLS   73 (324)
Q Consensus         2 ~L~~~~l~~lP~~-i~~l~~L~~L~L~~n~~-~lP~~i~~L~~---L~l~~C~~L~~lP~l---p~sL~~L~~~~C~sL~   73 (324)
                      +|++|.+..+|.. ++.+++|+.|+|++|.+ .+|..+.++++   |++++|+.....|..   .++|+.|++.+|.-..
T Consensus       260 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~  339 (606)
T 3t6q_A          260 NLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRL  339 (606)
T ss_dssp             ECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCC
T ss_pred             EeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCccc
Confidence            5666777766654 67777777777777777 77777766665   777765432222211   2566777776664333


Q ss_pred             cc
Q 020571           74 KH   75 (324)
Q Consensus        74 ~~   75 (324)
                      .+
T Consensus       340 ~~  341 (606)
T 3t6q_A          340 EL  341 (606)
T ss_dssp             BC
T ss_pred             cc
Confidence            33

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=97.30  E-value=0.00038  Score=67.26  Aligned_cols=69  Identities=23%  Similarity=0.209  Sum_probs=49.0

Q ss_pred             CeecCCCCCcc-chhhcCCCCCCEEEccCCCc-cCCcc-cccCCc---cccccccccCcCCCC---CCCCcEEecCCC
Q 020571            1 MNLVENKLESL-PASIGCLSSLEFLHLTRNNL-SLPEL-PVLLSH---IEARNCKQLQSLPEL---PSCPEELDTSIL   69 (324)
Q Consensus         1 ~~L~~~~l~~l-P~~i~~l~~L~~L~L~~n~~-~lP~~-i~~L~~---L~l~~C~~L~~lP~l---p~sL~~L~~~~C   69 (324)
                      |+|++|.|..+ |..++.+++|++|+|++|.+ .+|.. +.++++   |+|++++-....|..   .++|+.|++.++
T Consensus        61 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n  138 (477)
T 2id5_A           61 LELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDN  138 (477)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCT
T ss_pred             EECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCC
Confidence            47788888876 77888999999999999999 88864 566655   888876533333322   256777777664

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=97.29  E-value=0.00046  Score=66.00  Aligned_cols=68  Identities=24%  Similarity=0.258  Sum_probs=39.1

Q ss_pred             CeecCCCCCc-cchhhcCCCCCCEEEccCCCc-cC-CcccccCCc---cccccccccCcC-CCC---CCCCcEEecCCC
Q 020571            1 MNLVENKLES-LPASIGCLSSLEFLHLTRNNL-SL-PELPVLLSH---IEARNCKQLQSL-PEL---PSCPEELDTSIL   69 (324)
Q Consensus         1 ~~L~~~~l~~-lP~~i~~l~~L~~L~L~~n~~-~l-P~~i~~L~~---L~l~~C~~L~~l-P~l---p~sL~~L~~~~C   69 (324)
                      ++|++|.+.. +|..++.+++|+.|+|++|.+ .+ |..+..+++   |+|++|. +..+ |..   .++|+.|++++|
T Consensus       280 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N  357 (455)
T 3v47_A          280 CDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNF-LGSIDSRMFENLDKLEVLDLSYN  357 (455)
T ss_dssp             EECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCEECGGGGTTCTTCCEEECCSS
T ss_pred             EEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCc-cCCcChhHhcCcccCCEEECCCC
Confidence            3566666654 355566777777777777777 44 445555554   6666643 3333 221   355666666665

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=97.28  E-value=0.00048  Score=69.59  Aligned_cols=66  Identities=30%  Similarity=0.379  Sum_probs=32.4

Q ss_pred             eecCCCCCccch-hhcCCCCCCEEEccCCCc-cC-CcccccCCc---cccccccccCcCCC--C--CCCCcEEecCC
Q 020571            2 NLVENKLESLPA-SIGCLSSLEFLHLTRNNL-SL-PELPVLLSH---IEARNCKQLQSLPE--L--PSCPEELDTSI   68 (324)
Q Consensus         2 ~L~~~~l~~lP~-~i~~l~~L~~L~L~~n~~-~l-P~~i~~L~~---L~l~~C~~L~~lP~--l--p~sL~~L~~~~   68 (324)
                      +|++|+|..+|. .++.+++|++|+|++|.+ .+ |..+.++++   |+|++| .+..+|.  +  ..+|+.|++++
T Consensus        31 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~  106 (680)
T 1ziw_A           31 NLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN-ELSQLSDKTFAFCTNLTELHLMS  106 (680)
T ss_dssp             ECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCS
T ss_pred             ECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC-ccCccChhhhccCCCCCEEECCC
Confidence            455555555543 355555566666655555 33 334444443   555543 3444443  1  24455555544

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=97.28  E-value=0.00015  Score=66.55  Aligned_cols=87  Identities=22%  Similarity=0.234  Sum_probs=60.1

Q ss_pred             CeecCCCCCccc-hhhcCCCCCCEEEccCCCc-cCCcccccCCc---cccccccccCcCCCCCCCCcEEecCCCCCCCcc
Q 020571            1 MNLVENKLESLP-ASIGCLSSLEFLHLTRNNL-SLPELPVLLSH---IEARNCKQLQSLPELPSCPEELDTSILESLSKH   75 (324)
Q Consensus         1 ~~L~~~~l~~lP-~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~---L~l~~C~~L~~lP~lp~sL~~L~~~~C~sL~~~   75 (324)
                      |+|++|+|..++ ..++.+++|+.|+|++|.+ .+++ +..+++   |+|++| .+..+|.. ++|+.|++.++ .+..+
T Consensus        39 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n-~l~~l~~~-~~L~~L~l~~n-~l~~~  114 (317)
T 3o53_A           39 LDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNN-YVQELLVG-PSIETLHAANN-NISRV  114 (317)
T ss_dssp             EECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSS-EEEEEEEC-TTCCEEECCSS-CCSEE
T ss_pred             EECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCC-ccccccCC-CCcCEEECCCC-ccCCc
Confidence            578888888765 5788999999999999998 7775 777666   888875 46666644 67888888875 34444


Q ss_pred             CCCCCcccccceeccCC
Q 020571           76 FRPTASRKLTYFMFTNC   92 (324)
Q Consensus        76 ~~~~~~~~~~~l~~~nC   92 (324)
                      +... ...+..|.++++
T Consensus       115 ~~~~-~~~L~~L~l~~N  130 (317)
T 3o53_A          115 SCSR-GQGKKNIYLANN  130 (317)
T ss_dssp             EECC-CSSCEEEECCSS
T ss_pred             Cccc-cCCCCEEECCCC
Confidence            3221 233445555543

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=97.27  E-value=0.0002  Score=70.25  Aligned_cols=87  Identities=22%  Similarity=0.234  Sum_probs=59.1

Q ss_pred             CeecCCCCCccc-hhhcCCCCCCEEEccCCCc-cCCcccccCCc---cccccccccCcCCCCCCCCcEEecCCCCCCCcc
Q 020571            1 MNLVENKLESLP-ASIGCLSSLEFLHLTRNNL-SLPELPVLLSH---IEARNCKQLQSLPELPSCPEELDTSILESLSKH   75 (324)
Q Consensus         1 ~~L~~~~l~~lP-~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~---L~l~~C~~L~~lP~lp~sL~~L~~~~C~sL~~~   75 (324)
                      |+|++|.|..+| ..++.+++|++|+|++|.+ .+++ +..+++   |+|++| .+..+|.. ++|+.|++.+| .+..+
T Consensus        39 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~~~-~~L~~L~L~~N-~l~~~  114 (487)
T 3oja_A           39 LDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNN-YVQELLVG-PSIETLHAANN-NISRV  114 (487)
T ss_dssp             EECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSS-EEEEEEEC-TTCCEEECCSS-CCCCE
T ss_pred             EEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCC-cCCCCCCC-CCcCEEECcCC-cCCCC
Confidence            578888888765 5788999999999999998 6665 777766   888875 56666644 67888888775 34444


Q ss_pred             CCCCCcccccceeccCC
Q 020571           76 FRPTASRKLTYFMFTNC   92 (324)
Q Consensus        76 ~~~~~~~~~~~l~~~nC   92 (324)
                      +... ...+..|++++|
T Consensus       115 ~~~~-l~~L~~L~L~~N  130 (487)
T 3oja_A          115 SCSR-GQGKKNIYLANN  130 (487)
T ss_dssp             EECC-CSSCEEEECCSS
T ss_pred             Cccc-cCCCCEEECCCC
Confidence            3221 123445555443

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=97.26  E-value=0.00041  Score=68.70  Aligned_cols=91  Identities=18%  Similarity=0.132  Sum_probs=55.7

Q ss_pred             CeecCCCCCc-cchhhcCCCCCCEEEccCCCc-cCCc---ccccCCc---cccccccccCcCCCC----CCCCcEEecCC
Q 020571            1 MNLVENKLES-LPASIGCLSSLEFLHLTRNNL-SLPE---LPVLLSH---IEARNCKQLQSLPEL----PSCPEELDTSI   68 (324)
Q Consensus         1 ~~L~~~~l~~-lP~~i~~l~~L~~L~L~~n~~-~lP~---~i~~L~~---L~l~~C~~L~~lP~l----p~sL~~L~~~~   68 (324)
                      |+|++|.+.. +|..++.+++|+.|+|++|.+ .+|.   .+.++++   |+|++++-...+|.-    .++|+.|++++
T Consensus       358 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~  437 (562)
T 3a79_B          358 LNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSS  437 (562)
T ss_dssp             EECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCS
T ss_pred             EECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCC
Confidence            4677777775 677788888888888888887 7663   4555555   777776544436532    36677777777


Q ss_pred             CCCCCccCCCCCcccccceeccCC
Q 020571           69 LESLSKHFRPTASRKLTYFMFTNC   92 (324)
Q Consensus        69 C~sL~~~~~~~~~~~~~~l~~~nC   92 (324)
                      |.--..++.... ..+..|++++|
T Consensus       438 n~l~~~~~~~l~-~~L~~L~L~~N  460 (562)
T 3a79_B          438 NMLTGSVFRCLP-PKVKVLDLHNN  460 (562)
T ss_dssp             SCCCGGGGSSCC-TTCSEEECCSS
T ss_pred             CCCCcchhhhhc-CcCCEEECCCC
Confidence            643233333221 23445555554

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=97.25  E-value=0.00043  Score=67.00  Aligned_cols=90  Identities=12%  Similarity=0.118  Sum_probs=66.9

Q ss_pred             CeecCCCCCccchhhcCCCCCCEEEccCCCc-cCCcccccCCc---cccccccccCcCCCC--CCCCcEEecCCCCCCCc
Q 020571            1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSH---IEARNCKQLQSLPEL--PSCPEELDTSILESLSK   74 (324)
Q Consensus         1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~---L~l~~C~~L~~lP~l--p~sL~~L~~~~C~sL~~   74 (324)
                      ++|++|.+..+|. ++.+++|+.|+|++|.+ .+|. +..+++   |+|++|. +..++.+  .++|+.|++.+| .+..
T Consensus       270 L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~l~~n-~l~~  345 (466)
T 1o6v_A          270 LKLGANQISNISP-LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNN-ISDISPVSSLTKLQRLFFYNN-KVSD  345 (466)
T ss_dssp             EECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSC-CSCCGGGGGCTTCCEEECCSS-CCCC
T ss_pred             EECCCCccCcccc-ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCc-CCCchhhccCccCCEeECCCC-ccCC
Confidence            4788899998887 88999999999999999 8876 666666   9999874 4444433  378999999987 5666


Q ss_pred             cCCCCCcccccceeccCCcc
Q 020571           75 HFRPTASRKLTYFMFTNCLK   94 (324)
Q Consensus        75 ~~~~~~~~~~~~l~~~nC~~   94 (324)
                      ++.-.....+..|++.+|.-
T Consensus       346 ~~~l~~l~~L~~L~l~~n~l  365 (466)
T 1o6v_A          346 VSSLANLTNINWLSAGHNQI  365 (466)
T ss_dssp             CGGGTTCTTCCEEECCSSCC
T ss_pred             chhhccCCCCCEEeCCCCcc
Confidence            64333345566777777643

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=97.18  E-value=0.00071  Score=62.13  Aligned_cols=90  Identities=17%  Similarity=0.197  Sum_probs=51.3

Q ss_pred             CeecCCCCC---ccchhhcCCCCCCEEEccCCCc-cCCcccc-cCCccccccccccCcC-CC---CCCCCcEEecCCCCC
Q 020571            1 MNLVENKLE---SLPASIGCLSSLEFLHLTRNNL-SLPELPV-LLSHIEARNCKQLQSL-PE---LPSCPEELDTSILES   71 (324)
Q Consensus         1 ~~L~~~~l~---~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~-~L~~L~l~~C~~L~~l-P~---lp~sL~~L~~~~C~s   71 (324)
                      ++|++|.+.   ..|..+..+++|+.|++++|.+ .+|..+. +|..|+|++++ +..+ |.   -.++|+.|+++++ .
T Consensus       150 L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n-~  227 (330)
T 1xku_A          150 VELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNK-ITKVDAASLKGLNNLAKLGLSFN-S  227 (330)
T ss_dssp             EECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSC-CCEECTGGGTTCTTCCEEECCSS-C
T ss_pred             EECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccccccCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCC-c
Confidence            356677665   3566677788888888888888 7776553 23337777654 3333 21   1256777777765 3


Q ss_pred             CCccCC-CCC-cccccceeccCC
Q 020571           72 LSKHFR-PTA-SRKLTYFMFTNC   92 (324)
Q Consensus        72 L~~~~~-~~~-~~~~~~l~~~nC   92 (324)
                      +..++. .+. ...+..|++++|
T Consensus       228 l~~~~~~~~~~l~~L~~L~L~~N  250 (330)
T 1xku_A          228 ISAVDNGSLANTPHLRELHLNNN  250 (330)
T ss_dssp             CCEECTTTGGGSTTCCEEECCSS
T ss_pred             CceeChhhccCCCCCCEEECCCC
Confidence            444432 121 234445555554

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=97.17  E-value=0.00043  Score=72.26  Aligned_cols=58  Identities=21%  Similarity=0.221  Sum_probs=29.4

Q ss_pred             chhhcCCCCCCEEEccCCCc-cC-CcccccCCc---cccccccccCcCCC---C--CCCCcEEecCCC
Q 020571           12 PASIGCLSSLEFLHLTRNNL-SL-PELPVLLSH---IEARNCKQLQSLPE---L--PSCPEELDTSIL   69 (324)
Q Consensus        12 P~~i~~l~~L~~L~L~~n~~-~l-P~~i~~L~~---L~l~~C~~L~~lP~---l--p~sL~~L~~~~C   69 (324)
                      |..++.+++|++|+|++|++ .+ |..+++|++   |+|++|.....+|.   +  .++|+.|++++|
T Consensus        66 ~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N  133 (844)
T 3j0a_A           66 KEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKN  133 (844)
T ss_dssp             TTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESC
T ss_pred             HHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCC
Confidence            44455555555555555555 33 455555554   55555433333332   1  245666666654

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=97.17  E-value=0.00021  Score=65.48  Aligned_cols=69  Identities=14%  Similarity=0.125  Sum_probs=41.4

Q ss_pred             CeecCCCCC-ccchhh--cCCCCCCEEEccCCCc-cCCcccccC-----Cc---cccccccccCcCC-CC---CCCCcEE
Q 020571            1 MNLVENKLE-SLPASI--GCLSSLEFLHLTRNNL-SLPELPVLL-----SH---IEARNCKQLQSLP-EL---PSCPEEL   64 (324)
Q Consensus         1 ~~L~~~~l~-~lP~~i--~~l~~L~~L~L~~n~~-~lP~~i~~L-----~~---L~l~~C~~L~~lP-~l---p~sL~~L   64 (324)
                      |+|++|.|. .+|..+  +.+++|+.|+|++|.+ .+|..+..+     ++   |+|++++ +..+| ..   .++|+.|
T Consensus       100 L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L  178 (312)
T 1wwl_A          100 LTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH-SLNFSCEQVRVFPALSTL  178 (312)
T ss_dssp             EEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCS-CCCCCTTTCCCCSSCCEE
T ss_pred             EEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCC-CccchHHHhccCCCCCEE
Confidence            356666665 566665  6677777777777777 666655554     33   6666643 34443 21   2566777


Q ss_pred             ecCCCC
Q 020571           65 DTSILE   70 (324)
Q Consensus        65 ~~~~C~   70 (324)
                      +++++.
T Consensus       179 ~Ls~N~  184 (312)
T 1wwl_A          179 DLSDNP  184 (312)
T ss_dssp             ECCSCT
T ss_pred             ECCCCC
Confidence            777664

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=97.16  E-value=0.0003  Score=70.47  Aligned_cols=89  Identities=17%  Similarity=0.135  Sum_probs=67.7

Q ss_pred             CeecCCCCCcc-chhhcCCCCCCEEEccCCCc-cCCcccccCCc---cccccccccCcCCCC---CCCCcEEecCCCCCC
Q 020571            1 MNLVENKLESL-PASIGCLSSLEFLHLTRNNL-SLPELPVLLSH---IEARNCKQLQSLPEL---PSCPEELDTSILESL   72 (324)
Q Consensus         1 ~~L~~~~l~~l-P~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~---L~l~~C~~L~~lP~l---p~sL~~L~~~~C~sL   72 (324)
                      |+|++|.|..+ |..++.+++|+.|+|++|.+ .+|..+..+++   |+|++| .+..+|..   .++|+.|++.+| .+
T Consensus       259 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~l~~L~~L~L~~N-~l  336 (597)
T 3oja_B          259 VDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHN-SI  336 (597)
T ss_dssp             EECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSS-CC
T ss_pred             EECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCC-CCCccCcccccCCCCCEEECCCC-CC
Confidence            57899999865 78899999999999999999 99988776766   999986 55677643   278999999997 46


Q ss_pred             CccCCCCCcccccceeccCC
Q 020571           73 SKHFRPTASRKLTYFMFTNC   92 (324)
Q Consensus        73 ~~~~~~~~~~~~~~l~~~nC   92 (324)
                      ..++. .....+..|+++++
T Consensus       337 ~~~~~-~~~~~L~~L~l~~N  355 (597)
T 3oja_B          337 VTLKL-STHHTLKNLTLSHN  355 (597)
T ss_dssp             CCCCC-CTTCCCSEEECCSS
T ss_pred             CCcCh-hhcCCCCEEEeeCC
Confidence            65542 22244556666554

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=97.15  E-value=0.00086  Score=67.69  Aligned_cols=67  Identities=21%  Similarity=0.243  Sum_probs=35.7

Q ss_pred             eecCCCCCcc-chhhcCCCCCCEEEccCCCc-cCCc-ccccCCc---cccccccccCcCCC--C--CCCCcEEecCCC
Q 020571            2 NLVENKLESL-PASIGCLSSLEFLHLTRNNL-SLPE-LPVLLSH---IEARNCKQLQSLPE--L--PSCPEELDTSIL   69 (324)
Q Consensus         2 ~L~~~~l~~l-P~~i~~l~~L~~L~L~~n~~-~lP~-~i~~L~~---L~l~~C~~L~~lP~--l--p~sL~~L~~~~C   69 (324)
                      +|++|.+..+ |..++.+++|++|+|++|.+ .+|. .+.++++   |+|++| ++..+|.  +  ..+|+.|++.+|
T Consensus        55 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n  131 (680)
T 1ziw_A           55 DVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSN-SIQKIKNNPFVKQKNLITLDLSHN  131 (680)
T ss_dssp             ECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCSCTTTTCTTCCEEECCSS
T ss_pred             ECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCC-ccCccChhHccccCCCCEEECCCC
Confidence            5556655544 44556666666666666666 6664 3555554   666554 2344431  1  245555555554

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=97.14  E-value=0.00061  Score=65.14  Aligned_cols=74  Identities=18%  Similarity=0.112  Sum_probs=35.1

Q ss_pred             eecCCCCCcc-chhhcCCCCCCEEEccCCCc-cC-CcccccCCc---cccccccccCcCCCC---CCCCcEEecCCCCCC
Q 020571            2 NLVENKLESL-PASIGCLSSLEFLHLTRNNL-SL-PELPVLLSH---IEARNCKQLQSLPEL---PSCPEELDTSILESL   72 (324)
Q Consensus         2 ~L~~~~l~~l-P~~i~~l~~L~~L~L~~n~~-~l-P~~i~~L~~---L~l~~C~~L~~lP~l---p~sL~~L~~~~C~sL   72 (324)
                      +|++|.|..+ |..++.+++|+.|+|++|.+ .+ |..+..+++   |+|++|+-....|..   .++|+.|++.++ .+
T Consensus       305 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l  383 (455)
T 3v47_A          305 TLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTN-QL  383 (455)
T ss_dssp             ECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CC
T ss_pred             ECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCC-cc
Confidence            4555555543 33555555555666655555 44 334444444   555554322222321   145555555553 34


Q ss_pred             CccC
Q 020571           73 SKHF   76 (324)
Q Consensus        73 ~~~~   76 (324)
                      ..++
T Consensus       384 ~~~~  387 (455)
T 3v47_A          384 KSVP  387 (455)
T ss_dssp             SCCC
T ss_pred             ccCC
Confidence            4444

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=97.13  E-value=0.00045  Score=64.36  Aligned_cols=67  Identities=31%  Similarity=0.426  Sum_probs=53.8

Q ss_pred             eecC-CCCCccchh-hcCCCCCCEEEccCCCc-cCCcc-cccCCccccccccccCcCCCCC--CCCcEEecCC
Q 020571            2 NLVE-NKLESLPAS-IGCLSSLEFLHLTRNNL-SLPEL-PVLLSHIEARNCKQLQSLPELP--SCPEELDTSI   68 (324)
Q Consensus         2 ~L~~-~~l~~lP~~-i~~l~~L~~L~L~~n~~-~lP~~-i~~L~~L~l~~C~~L~~lP~lp--~sL~~L~~~~   68 (324)
                      ++++ +.++.||.+ +..+++|+.|+|++|++ .||.. +.+|.+|.+.+|.+|+++|.+.  .+|+.+++.+
T Consensus       183 ~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~  255 (350)
T 4ay9_X          183 NLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKLPTLEKLVALMEASLTY  255 (350)
T ss_dssp             ECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECSC
T ss_pred             hhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhccchHhhhccCCCcCcCCCchhCcChhhCcCCC
Confidence            4554 578899976 48899999999999999 99974 6677778888889999999765  5777777654

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=97.11  E-value=1.6e-05  Score=68.17  Aligned_cols=89  Identities=20%  Similarity=0.231  Sum_probs=62.9

Q ss_pred             CeecCCCCCccchhhcCCCCCCEEEccCCCc-cCCcccccCCc---cccccccccCcCCCCC--CCCcEEecCCCCCCCc
Q 020571            1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSH---IEARNCKQLQSLPELP--SCPEELDTSILESLSK   74 (324)
Q Consensus         1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~---L~l~~C~~L~~lP~lp--~sL~~L~~~~C~sL~~   74 (324)
                      |+|++|.|..+| .++.+++|+.|+|++|.+ .+|..+..+++   |+|++| .+..+|.+.  ++|+.|++.++ .+..
T Consensus        53 L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N-~l~~l~~~~~l~~L~~L~l~~N-~i~~  129 (198)
T 1ds9_A           53 LALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN-QIASLSGIEKLVNLRVLYMSNN-KITN  129 (198)
T ss_dssp             EECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEE-ECCCHHHHHHHHHSSEEEESEE-ECCC
T ss_pred             EECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCC-cCCcCCccccCCCCCEEECCCC-cCCc
Confidence            467888888888 888999999999999999 99987765554   888875 666676543  67888988885 4554


Q ss_pred             cCC---CCCcccccceeccCC
Q 020571           75 HFR---PTASRKLTYFMFTNC   92 (324)
Q Consensus        75 ~~~---~~~~~~~~~l~~~nC   92 (324)
                      ++.   -.....+..|.+.++
T Consensus       130 ~~~~~~l~~l~~L~~L~l~~N  150 (198)
T 1ds9_A          130 WGEIDKLAALDKLEDLLLAGN  150 (198)
T ss_dssp             HHHHHHHTTTTTCSEEEECSC
T ss_pred             hhHHHHHhcCCCCCEEEecCC
Confidence            432   112234456666554

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=97.10  E-value=0.00039  Score=63.79  Aligned_cols=91  Identities=13%  Similarity=0.117  Sum_probs=65.7

Q ss_pred             CeecCCCCCccc-hhh-cCCCCCCEEEccCCCc-cCCcccccCCc---cccccccccCcCCCC---CCCCcEEecCCCCC
Q 020571            1 MNLVENKLESLP-ASI-GCLSSLEFLHLTRNNL-SLPELPVLLSH---IEARNCKQLQSLPEL---PSCPEELDTSILES   71 (324)
Q Consensus         1 ~~L~~~~l~~lP-~~i-~~l~~L~~L~L~~n~~-~lP~~i~~L~~---L~l~~C~~L~~lP~l---p~sL~~L~~~~C~s   71 (324)
                      |+|++|.|..++ ..+ ..+++|+.|+|++|.+ .+|... .+++   |+|++| ++..+|.-   .++|+.|+++++ .
T Consensus       149 L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~L~~N-~  225 (317)
T 3o53_A          149 LDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV-VFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNN-K  225 (317)
T ss_dssp             EECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCC-CCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTS-C
T ss_pred             EECCCCCCCcccHHHHhhccCcCCEEECCCCcCccccccc-ccccCCEEECCCC-cCCcchhhhcccCcccEEECcCC-c
Confidence            578999998754 445 4789999999999999 887643 3444   999885 56666542   378999999996 6


Q ss_pred             CCccCCCCCc-ccccceeccCCcc
Q 020571           72 LSKHFRPTAS-RKLTYFMFTNCLK   94 (324)
Q Consensus        72 L~~~~~~~~~-~~~~~l~~~nC~~   94 (324)
                      +..+|..+.. ..+..|++.++.-
T Consensus       226 l~~l~~~~~~l~~L~~L~l~~N~~  249 (317)
T 3o53_A          226 LVLIEKALRFSQNLEHFDLRGNGF  249 (317)
T ss_dssp             CCEECTTCCCCTTCCEEECTTCCC
T ss_pred             ccchhhHhhcCCCCCEEEccCCCc
Confidence            7788765533 4566777766543

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=97.09  E-value=0.0004  Score=68.30  Aligned_cols=93  Identities=16%  Similarity=0.030  Sum_probs=65.4

Q ss_pred             CeecCCCCCcc---chhhcCCCCCCEEEccCCCc-cCCcccccCCc---cccccccccCcCCC----CCCCCcEEecCCC
Q 020571            1 MNLVENKLESL---PASIGCLSSLEFLHLTRNNL-SLPELPVLLSH---IEARNCKQLQSLPE----LPSCPEELDTSIL   69 (324)
Q Consensus         1 ~~L~~~~l~~l---P~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~---L~l~~C~~L~~lP~----lp~sL~~L~~~~C   69 (324)
                      ++|++|.+..+   |..+..+++|+.|+|++|.+ .+|..+..+++   |++++|......|.    -.++|+.|++.+|
T Consensus       352 L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n  431 (570)
T 2z63_A          352 LDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT  431 (570)
T ss_dssp             EECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTS
T ss_pred             EeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCC
Confidence            46788888755   78888999999999999999 88877777776   88888665444341    2367889999887


Q ss_pred             CCCCccCCCCC-cccccceeccCCc
Q 020571           70 ESLSKHFRPTA-SRKLTYFMFTNCL   93 (324)
Q Consensus        70 ~sL~~~~~~~~-~~~~~~l~~~nC~   93 (324)
                      .-....+..+. ...+..|.+.+|.
T Consensus       432 ~l~~~~~~~~~~l~~L~~L~l~~n~  456 (570)
T 2z63_A          432 HTRVAFNGIFNGLSSLEVLKMAGNS  456 (570)
T ss_dssp             CCEECCTTTTTTCTTCCEEECTTCE
T ss_pred             cccccchhhhhcCCcCcEEECcCCc
Confidence            54333443332 2456677777764

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=97.04  E-value=0.00035  Score=68.49  Aligned_cols=89  Identities=16%  Similarity=0.080  Sum_probs=61.5

Q ss_pred             CeecCCCCCccchhhcCCCCCCEEEccCCCc-cCCcccccCCccccccccccCcCCCCCCCCcEEecCCCCCCCcc-CCC
Q 020571            1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSHIEARNCKQLQSLPELPSCPEELDTSILESLSKH-FRP   78 (324)
Q Consensus         1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~L~l~~C~~L~~lP~lp~sL~~L~~~~C~sL~~~-~~~   78 (324)
                      |+|++|.|..+++ ++.+++|++|+|++|.+ .+|.. .+|..|+|++|.--...+...++|+.|++.+| .+..+ +..
T Consensus        63 L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~~-~~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~  139 (487)
T 3oja_A           63 LNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLVG-PSIETLHAANNNISRVSCSRGQGKKNIYLANN-KITMLRDLD  139 (487)
T ss_dssp             EECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEEC-TTCCEEECCSSCCCCEEECCCSSCEEEECCSS-CCCSGGGBC
T ss_pred             EEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCCC-CCcCEEECcCCcCCCCCccccCCCCEEECCCC-CCCCCCchh
Confidence            5789999987775 99999999999999999 88864 55555888886544333444578888988886 34444 222


Q ss_pred             CC-cccccceeccCC
Q 020571           79 TA-SRKLTYFMFTNC   92 (324)
Q Consensus        79 ~~-~~~~~~l~~~nC   92 (324)
                      +. ...+..|+++++
T Consensus       140 ~~~l~~L~~L~Ls~N  154 (487)
T 3oja_A          140 EGCRSRVQYLDLKLN  154 (487)
T ss_dssp             GGGGSSEEEEECTTS
T ss_pred             hcCCCCCCEEECCCC
Confidence            22 234455666554

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=97.00  E-value=4.1e-05  Score=70.38  Aligned_cols=71  Identities=10%  Similarity=0.007  Sum_probs=33.2

Q ss_pred             eecCCCCCccchhhcCCCCCCEEEccCCCc-c--CCcccccCCc---cccccccccCcCCC---CCCCCcEEecCCCCCC
Q 020571            2 NLVENKLESLPASIGCLSSLEFLHLTRNNL-S--LPELPVLLSH---IEARNCKQLQSLPE---LPSCPEELDTSILESL   72 (324)
Q Consensus         2 ~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~--lP~~i~~L~~---L~l~~C~~L~~lP~---lp~sL~~L~~~~C~sL   72 (324)
                      +++++.+...+..+..+++|+.|+|++|.+ .  +|..+..+++   |+|++|.--...|.   -.++|+.|++.+|..+
T Consensus        76 ~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l  155 (336)
T 2ast_B           76 RCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGF  155 (336)
T ss_dssp             ECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSC
T ss_pred             EcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCC
Confidence            344455544444455555566666665555 2  4544444443   55555432111111   1245555555555433

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=96.99  E-value=0.00099  Score=69.52  Aligned_cols=71  Identities=18%  Similarity=0.122  Sum_probs=55.1

Q ss_pred             CeecCCCCCcc-chhhcCCCCCCEEEccCCCc--cC-CcccccCCc---cccccccccCcCCCC---CCCCcEEecCCCC
Q 020571            1 MNLVENKLESL-PASIGCLSSLEFLHLTRNNL--SL-PELPVLLSH---IEARNCKQLQSLPEL---PSCPEELDTSILE   70 (324)
Q Consensus         1 ~~L~~~~l~~l-P~~i~~l~~L~~L~L~~n~~--~l-P~~i~~L~~---L~l~~C~~L~~lP~l---p~sL~~L~~~~C~   70 (324)
                      |||++|.|..+ |.+++.+++|++|+|++|++  .| |..+.+|++   |+|++|.-....|+.   ..+|+.|++++|.
T Consensus        29 LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~  108 (844)
T 3j0a_A           29 LLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCG  108 (844)
T ss_dssp             EEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCC
T ss_pred             EECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCC
Confidence            58899999865 77899999999999999955  77 677888877   999986544334543   3678999998874


Q ss_pred             C
Q 020571           71 S   71 (324)
Q Consensus        71 s   71 (324)
                      -
T Consensus       109 l  109 (844)
T 3j0a_A          109 L  109 (844)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=96.99  E-value=0.00028  Score=64.60  Aligned_cols=72  Identities=14%  Similarity=0.149  Sum_probs=56.8

Q ss_pred             CeecCCCCCccchhhcCC-----CCCCEEEccCCCc-cCC-cccccCCc---cccccccccCcC-------CCCCCCCcE
Q 020571            1 MNLVENKLESLPASIGCL-----SSLEFLHLTRNNL-SLP-ELPVLLSH---IEARNCKQLQSL-------PELPSCPEE   63 (324)
Q Consensus         1 ~~L~~~~l~~lP~~i~~l-----~~L~~L~L~~n~~-~lP-~~i~~L~~---L~l~~C~~L~~l-------P~lp~sL~~   63 (324)
                      |+|++|.|..+|..++.+     ++|++|+|++|.+ .+| ..++++++   |+|++++....+       +.-.++|+.
T Consensus       126 L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~  205 (312)
T 1wwl_A          126 LNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQV  205 (312)
T ss_dssp             EEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCE
T ss_pred             EEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCE
Confidence            578999999888888877     9999999999999 777 67888877   999988754331       133478999


Q ss_pred             EecCCCCCCC
Q 020571           64 LDTSILESLS   73 (324)
Q Consensus        64 L~~~~C~sL~   73 (324)
                      |++++| .+.
T Consensus       206 L~L~~N-~l~  214 (312)
T 1wwl_A          206 LALRNA-GME  214 (312)
T ss_dssp             EECTTS-CCC
T ss_pred             EECCCC-cCc
Confidence            999986 454

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=96.91  E-value=0.00093  Score=60.96  Aligned_cols=68  Identities=21%  Similarity=0.189  Sum_probs=53.5

Q ss_pred             CeecCCCCCcc-chhhcCC---CCCCEEEccCCCc-cCCcccc-cCCccccccccccCcCCC--CCCCCcEEecCCC
Q 020571            1 MNLVENKLESL-PASIGCL---SSLEFLHLTRNNL-SLPELPV-LLSHIEARNCKQLQSLPE--LPSCPEELDTSIL   69 (324)
Q Consensus         1 ~~L~~~~l~~l-P~~i~~l---~~L~~L~L~~n~~-~lP~~i~-~L~~L~l~~C~~L~~lP~--lp~sL~~L~~~~C   69 (324)
                      |+|++|.|..+ |..++.+   ++|+.|+|++|.+ .+|..+. +|..|+|+++ ++..+|.  -.++|+.|++++.
T Consensus       229 L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~L~~L~Ls~N-~l~~~~~~~~l~~L~~L~L~~N  304 (310)
T 4glp_A          229 LDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLPAKLRVLDLSSN-RLNRAPQPDELPEVDNLTLDGN  304 (310)
T ss_dssp             EECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCCSCCSCEECCSC-CCCSCCCTTSCCCCSCEECSST
T ss_pred             EECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhcCCCCEEECCCC-cCCCCchhhhCCCccEEECcCC
Confidence            58999999876 8888887   6999999999999 9998774 3333999975 5666654  3377888888774

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=96.74  E-value=0.00032  Score=64.30  Aligned_cols=96  Identities=16%  Similarity=0.178  Sum_probs=54.3

Q ss_pred             CeecCCCCC-ccchhhcCCCCCCEEEccCC-Cc-c--CCcccccCCc---cccccccccCc--CC----CCCCCCcEEec
Q 020571            1 MNLVENKLE-SLPASIGCLSSLEFLHLTRN-NL-S--LPELPVLLSH---IEARNCKQLQS--LP----ELPSCPEELDT   66 (324)
Q Consensus         1 ~~L~~~~l~-~lP~~i~~l~~L~~L~L~~n-~~-~--lP~~i~~L~~---L~l~~C~~L~~--lP----~lp~sL~~L~~   66 (324)
                      |+|++|.+. ..|..++.+++|+.|+|++| .+ .  +|..+.++++   |+|++|..+..  ++    .+|.+|+.|++
T Consensus       123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l  202 (336)
T 2ast_B          123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL  202 (336)
T ss_dssp             EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEEC
T ss_pred             EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEe
Confidence            356677666 56667777777888888777 45 2  5655555554   77777744443  22    23337777777


Q ss_pred             CCCC-CCC--ccCCCC-CcccccceeccCCcccc
Q 020571           67 SILE-SLS--KHFRPT-ASRKLTYFMFTNCLKLN   96 (324)
Q Consensus        67 ~~C~-sL~--~~~~~~-~~~~~~~l~~~nC~~L~   96 (324)
                      .+|. .+.  .++..+ ...++..|++++|..+.
T Consensus       203 ~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~  236 (336)
T 2ast_B          203 SGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLK  236 (336)
T ss_dssp             CSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCC
T ss_pred             CCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCC
Confidence            7764 231  122111 11344556666665443

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=95.79  E-value=0.0052  Score=52.23  Aligned_cols=87  Identities=14%  Similarity=0.178  Sum_probs=56.3

Q ss_pred             ccchhhcCCCCCCEEEccCCCc---cCCcccccCCc---cccccccccC-----cCCCC---CCCCcEEecCCCCCCCc-
Q 020571           10 SLPASIGCLSSLEFLHLTRNNL---SLPELPVLLSH---IEARNCKQLQ-----SLPEL---PSCPEELDTSILESLSK-   74 (324)
Q Consensus        10 ~lP~~i~~l~~L~~L~L~~n~~---~lP~~i~~L~~---L~l~~C~~L~-----~lP~l---p~sL~~L~~~~C~sL~~-   74 (324)
                      .+|.....--.|+.|||++|.+   .+. .+..+++   |+|++|.++.     .|..+   .++|+.|++++|..+.. 
T Consensus        52 ~LP~~~~~~~~L~~LDLs~~~Itd~GL~-~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~  130 (176)
T 3e4g_A           52 HLPTGPLDKYKIQAIDATDSCIMSIGFD-HMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDK  130 (176)
T ss_dssp             GSCCCSTTCCCEEEEEEESCCCCGGGGG-GGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHH
T ss_pred             cCCcccCCCceEeEEeCcCCCccHHHHH-HhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHH
Confidence            4565332234699999999976   222 2344444   9999998653     34443   35799999999987653 


Q ss_pred             -cCCCCCcccccceeccCCcccch
Q 020571           75 -HFRPTASRKLTYFMFTNCLKLNK   97 (324)
Q Consensus        75 -~~~~~~~~~~~~l~~~nC~~L~~   97 (324)
                       +..-....++..|.+.+|.++..
T Consensus       131 Gl~~L~~~~~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          131 GIIALHHFRNLKYLFLSDLPGVKE  154 (176)
T ss_dssp             HHHHGGGCTTCCEEEEESCTTCCC
T ss_pred             HHHHHhcCCCCCEEECCCCCCCCc
Confidence             11111235677899999999874

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=95.37  E-value=0.0019  Score=60.61  Aligned_cols=70  Identities=9%  Similarity=0.006  Sum_probs=44.5

Q ss_pred             CeecCCCCC----ccchhh-------cCCCCCCEEEccCCCc-c-----CCcccccCCc---ccccccccc----CcCCC
Q 020571            1 MNLVENKLE----SLPASI-------GCLSSLEFLHLTRNNL-S-----LPELPVLLSH---IEARNCKQL----QSLPE   56 (324)
Q Consensus         1 ~~L~~~~l~----~lP~~i-------~~l~~L~~L~L~~n~~-~-----lP~~i~~L~~---L~l~~C~~L----~~lP~   56 (324)
                      ++|++|.+.    .+|..+       ..+++|++|+|++|.+ .     +|..+..+++   |+|++|.--    ..++.
T Consensus        65 L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~  144 (386)
T 2ca6_A           65 AEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIAR  144 (386)
T ss_dssp             EECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred             EeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHH
Confidence            356776444    445555       6788888888888887 6     6777766665   888776531    11221


Q ss_pred             CC------------CCCcEEecCCCC
Q 020571           57 LP------------SCPEELDTSILE   70 (324)
Q Consensus        57 lp------------~sL~~L~~~~C~   70 (324)
                      ..            ++|+.|++.+|.
T Consensus       145 ~l~~l~~~~~~~~~~~L~~L~L~~n~  170 (386)
T 2ca6_A          145 ALQELAVNKKAKNAPPLRSIICGRNR  170 (386)
T ss_dssp             HHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred             HHHHHhhhhhcccCCCCcEEECCCCC
Confidence            11            577788887763

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=95.11  E-value=0.012  Score=53.29  Aligned_cols=54  Identities=24%  Similarity=0.164  Sum_probs=35.0

Q ss_pred             cCCCCCCEEEccCCCc-cCC---cccccCCc---cccccccccCcCCCC---C-CCCcEEecCCCC
Q 020571           16 GCLSSLEFLHLTRNNL-SLP---ELPVLLSH---IEARNCKQLQSLPEL---P-SCPEELDTSILE   70 (324)
Q Consensus        16 ~~l~~L~~L~L~~n~~-~lP---~~i~~L~~---L~l~~C~~L~~lP~l---p-~sL~~L~~~~C~   70 (324)
                      ..+++|+.|+|++|.+ .|+   ..+..+++   |+|++ +++..+.++   . .+|+.|++.++.
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~-N~i~~~~~l~~l~~l~L~~L~L~~Np  231 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSG-NELKSERELDKIKGLKLEELWLDGNS  231 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTT-SCCCSGGGGGGGTTSCCSEEECTTST
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCC-CccCCchhhhhcccCCcceEEccCCc
Confidence            4578888888888887 655   44445554   88875 444444322   1 188899988864

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=94.98  E-value=0.0031  Score=59.20  Aligned_cols=92  Identities=13%  Similarity=0.155  Sum_probs=64.2

Q ss_pred             CeecCCCCC------ccchhhcCCCCCCEEEccCCCc------cCCcccccCCc---cccccccccCc----CCC-C---
Q 020571            1 MNLVENKLE------SLPASIGCLSSLEFLHLTRNNL------SLPELPVLLSH---IEARNCKQLQS----LPE-L---   57 (324)
Q Consensus         1 ~~L~~~~l~------~lP~~i~~l~~L~~L~L~~n~~------~lP~~i~~L~~---L~l~~C~~L~~----lP~-l---   57 (324)
                      |+|++|.|.      -+|..+..+++|+.|+|++|.+      .+|..+..+++   |+|++|.--..    +|. +   
T Consensus       192 L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~  271 (386)
T 2ca6_A          192 VKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKL  271 (386)
T ss_dssp             EECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTC
T ss_pred             EECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhc
Confidence            478889887      3454888999999999999986      26777777766   99998763221    232 1   


Q ss_pred             -CCCCcEEecCCCCCCCc-----cCCCC-C-cccccceeccCCc
Q 020571           58 -PSCPEELDTSILESLSK-----HFRPT-A-SRKLTYFMFTNCL   93 (324)
Q Consensus        58 -p~sL~~L~~~~C~sL~~-----~~~~~-~-~~~~~~l~~~nC~   93 (324)
                       .++|+.|++++|. +..     ++..+ . ...+..|++.+|.
T Consensus       272 ~~~~L~~L~L~~n~-i~~~g~~~l~~~l~~~l~~L~~L~l~~N~  314 (386)
T 2ca6_A          272 ENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGNR  314 (386)
T ss_dssp             SSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred             cCCCeEEEECcCCc-CCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence             5789999999974 444     55433 2 2456677777654

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=94.94  E-value=0.0041  Score=52.91  Aligned_cols=71  Identities=17%  Similarity=0.241  Sum_probs=44.5

Q ss_pred             CeecCCCCCc--cchhhcCCCCCCEEEccCCC-c------cCCcc---cccCCccccccccccC-----cCCCCCCCCcE
Q 020571            1 MNLVENKLES--LPASIGCLSSLEFLHLTRNN-L------SLPEL---PVLLSHIEARNCKQLQ-----SLPELPSCPEE   63 (324)
Q Consensus         1 ~~L~~~~l~~--lP~~i~~l~~L~~L~L~~n~-~------~lP~~---i~~L~~L~l~~C~~L~-----~lP~lp~sL~~   63 (324)
                      |||++|.|+.  +. .+..+++|+.|+|++|. +      .|...   -..|..|+|++|.++.     .|-.+ ++|+.
T Consensus        66 LDLs~~~Itd~GL~-~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~-~~L~~  143 (176)
T 3e4g_A           66 IDATDSCIMSIGFD-HMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHF-RNLKY  143 (176)
T ss_dssp             EEEESCCCCGGGGG-GGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGC-TTCCE
T ss_pred             EeCcCCCccHHHHH-HhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcC-CCCCE
Confidence            5778887762  32 46778888888888884 2      22211   0134448888887653     23333 67888


Q ss_pred             EecCCCCCCC
Q 020571           64 LDTSILESLS   73 (324)
Q Consensus        64 L~~~~C~sL~   73 (324)
                      |++.+|..+.
T Consensus       144 L~L~~c~~It  153 (176)
T 3e4g_A          144 LFLSDLPGVK  153 (176)
T ss_dssp             EEEESCTTCC
T ss_pred             EECCCCCCCC
Confidence            8888887654

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=94.79  E-value=0.016  Score=53.94  Aligned_cols=18  Identities=28%  Similarity=0.361  Sum_probs=8.1

Q ss_pred             hhcCCC-CCCEEEccCCCc
Q 020571           14 SIGCLS-SLEFLHLTRNNL   31 (324)
Q Consensus        14 ~i~~l~-~L~~L~L~~n~~   31 (324)
                      .+..++ +|+.|+|++|.+
T Consensus        45 ~l~~~~~~L~~L~Ls~N~l   63 (362)
T 3goz_A           45 AFANTPASVTSLNLSGNSL   63 (362)
T ss_dssp             HHHTCCTTCCEEECCSSCG
T ss_pred             HHHhCCCceeEEECcCCCC
Confidence            333444 444444444444

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=94.61  E-value=0.017  Score=52.90  Aligned_cols=18  Identities=22%  Similarity=0.602  Sum_probs=13.8

Q ss_pred             CCCCCEEEccCCCc-cCCc
Q 020571           18 LSSLEFLHLTRNNL-SLPE   35 (324)
Q Consensus        18 l~~L~~L~L~~n~~-~lP~   35 (324)
                      +++|+.|+|++|++ .||.
T Consensus       225 ~~~L~~l~L~~n~i~~I~~  243 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPD  243 (329)
T ss_dssp             CTTCCEEECTTBCCCEECT
T ss_pred             cCCCeEEECCCCCcceecH
Confidence            67788888887777 7775

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=93.78  E-value=0.004  Score=61.35  Aligned_cols=69  Identities=16%  Similarity=0.240  Sum_probs=33.9

Q ss_pred             eecCCCCC-ccchhhc-CCCCCCEEEccCC-Cc-c--CCcccccCCc---ccccccc-------ccCcCCCCCCCCcEEe
Q 020571            2 NLVENKLE-SLPASIG-CLSSLEFLHLTRN-NL-S--LPELPVLLSH---IEARNCK-------QLQSLPELPSCPEELD   65 (324)
Q Consensus         2 ~L~~~~l~-~lP~~i~-~l~~L~~L~L~~n-~~-~--lP~~i~~L~~---L~l~~C~-------~L~~lP~lp~sL~~L~   65 (324)
                      +|++|.+. ..+..+. .+++|+.|+|++| .+ .  ++..+.++++   |+|++|.       .+..++.-.++|+.|+
T Consensus       111 ~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~  190 (594)
T 2p1m_B          111 RLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLN  190 (594)
T ss_dssp             EEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEE
T ss_pred             EeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEE
Confidence            45555554 2333343 4666777777666 33 2  4433333333   6666554       1222333334566666


Q ss_pred             cCCCC
Q 020571           66 TSILE   70 (324)
Q Consensus        66 ~~~C~   70 (324)
                      +.+|.
T Consensus       191 l~~~~  195 (594)
T 2p1m_B          191 ISCLA  195 (594)
T ss_dssp             CTTCC
T ss_pred             ecccC
Confidence            66553

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=93.63  E-value=0.0094  Score=58.66  Aligned_cols=54  Identities=20%  Similarity=0.212  Sum_probs=26.9

Q ss_pred             CCCCCCEEEccCCCc--cCCccc----ccCCccccccccccCc--CCCC---CCCCcEEecCCCC
Q 020571           17 CLSSLEFLHLTRNNL--SLPELP----VLLSHIEARNCKQLQS--LPEL---PSCPEELDTSILE   70 (324)
Q Consensus        17 ~l~~L~~L~L~~n~~--~lP~~i----~~L~~L~l~~C~~L~~--lP~l---p~sL~~L~~~~C~   70 (324)
                      .+++|+.|+|++|.+  ..+..+    .+|..|+|++|..+..  ++.+   .++|+.|++.+|.
T Consensus       103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~  167 (594)
T 2p1m_B          103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD  167 (594)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE
T ss_pred             hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc
Confidence            456666666666655  223222    2222366666654433  2222   2466666666554

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=93.56  E-value=0.017  Score=53.76  Aligned_cols=68  Identities=22%  Similarity=0.242  Sum_probs=35.8

Q ss_pred             CeecCCCCCccch-h----hcC-CCCCCEEEccCCCc-cC-----Ccccc----cCCccccccccccCcCC---------
Q 020571            1 MNLVENKLESLPA-S----IGC-LSSLEFLHLTRNNL-SL-----PELPV----LLSHIEARNCKQLQSLP---------   55 (324)
Q Consensus         1 ~~L~~~~l~~lP~-~----i~~-l~~L~~L~L~~n~~-~l-----P~~i~----~L~~L~l~~C~~L~~lP---------   55 (324)
                      |+|++|.|...+. .    +.. .++|+.|+|++|.+ ..     +..+.    +|..|+|++|. +....         
T Consensus       114 L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~  192 (362)
T 3goz_A          114 LDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNN-LASKNCAELAKFLA  192 (362)
T ss_dssp             EECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHH
T ss_pred             EECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCC-CchhhHHHHHHHHH
Confidence            4667777764443 2    223 25777777777765 32     22222    22227777653 32222         


Q ss_pred             CCCCCCcEEecCCC
Q 020571           56 ELPSCPEELDTSIL   69 (324)
Q Consensus        56 ~lp~sL~~L~~~~C   69 (324)
                      ..|.+|+.|++++|
T Consensus       193 ~~~~~L~~L~Ls~N  206 (362)
T 3goz_A          193 SIPASVTSLDLSAN  206 (362)
T ss_dssp             TSCTTCCEEECTTS
T ss_pred             hCCCCCCEEECCCC
Confidence            23457777777765

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=93.18  E-value=0.032  Score=50.47  Aligned_cols=25  Identities=20%  Similarity=0.230  Sum_probs=13.0

Q ss_pred             cccccccccCcCCCCC------CCCcEEecCC
Q 020571           43 IEARNCKQLQSLPELP------SCPEELDTSI   68 (324)
Q Consensus        43 L~l~~C~~L~~lP~lp------~sL~~L~~~~   68 (324)
                      |+|++ +++..++.+|      ++|+.|++++
T Consensus       175 L~Ls~-N~l~~l~~l~~~~~~l~~L~~L~Ls~  205 (267)
T 3rw6_A          175 LNLSN-NRLYRLDDMSSIVQKAPNLKILNLSG  205 (267)
T ss_dssp             EECTT-SCCCCCGGGTTHHHHSTTCCEEECTT
T ss_pred             EECCC-CCCCCCccchhHHhhCCCCCEEECCC
Confidence            66655 3444444322      4566666655

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=92.63  E-value=0.082  Score=51.89  Aligned_cols=32  Identities=13%  Similarity=0.001  Sum_probs=18.9

Q ss_pred             cchhhcCCCCCCEEEccCCCc-cCCcccccCCc
Q 020571           11 LPASIGCLSSLEFLHLTRNNL-SLPELPVLLSH   42 (324)
Q Consensus        11 lP~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~   42 (324)
                      ++..+..+++|+.|+|++|.+ .+|..+.+++.
T Consensus       212 l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~  244 (592)
T 3ogk_B          212 LETIARNCRSLVSVKVGDFEILELVGFFKAAAN  244 (592)
T ss_dssp             HHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTT
T ss_pred             HHHHHhhCCCCcEEeccCccHHHHHHHHhhhhH
Confidence            444445566666666666666 66655555544

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=92.59  E-value=0.08  Score=48.38  Aligned_cols=33  Identities=15%  Similarity=0.278  Sum_probs=21.0

Q ss_pred             eecCCCCCccchh-hcCCCCCCEEEccCCCc-cCCc
Q 020571            2 NLVENKLESLPAS-IGCLSSLEFLHLTRNNL-SLPE   35 (324)
Q Consensus         2 ~L~~~~l~~lP~~-i~~l~~L~~L~L~~n~~-~lP~   35 (324)
                      +|++|+++.||.. +..+++|+.|+|++| + .|+.
T Consensus       232 ~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~  266 (329)
T 3sb4_A          232 DISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQ  266 (329)
T ss_dssp             ECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECT
T ss_pred             ECCCCCcceecHhhhhCCCCCCEEECCcc-cceehH
Confidence            4555566666654 455677777777765 6 6664

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=91.58  E-value=0.037  Score=52.62  Aligned_cols=51  Identities=22%  Similarity=0.101  Sum_probs=28.3

Q ss_pred             CCCCCEEEccCCCc-c-----CCcccccCCc---cccccccccCcC------C---CCCCCCcEEecCCC
Q 020571           18 LSSLEFLHLTRNNL-S-----LPELPVLLSH---IEARNCKQLQSL------P---ELPSCPEELDTSIL   69 (324)
Q Consensus        18 l~~L~~L~L~~n~~-~-----lP~~i~~L~~---L~l~~C~~L~~l------P---~lp~sL~~L~~~~C   69 (324)
                      +++|+.|+|++|.+ .     +|..+..+++   |+|++|. +...      +   .-.++|+.|++++|
T Consensus       198 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~L~~n  266 (461)
T 1z7x_W          198 PCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK-LGDVGMAELCPGLLHPSSRLRTLWIWEC  266 (461)
T ss_dssp             CCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred             CCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc-CChHHHHHHHHHHhcCCCCceEEECcCC
Confidence            45677777777766 4     4555544444   6666653 2211      1   12356677777666

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=90.66  E-value=0.091  Score=49.82  Aligned_cols=70  Identities=19%  Similarity=0.154  Sum_probs=41.9

Q ss_pred             CeecCCCCC-----ccchhhcCCCCCCEEEccCCCc-c-CCcc----cc----cCCcccccccccc----CcCCC---CC
Q 020571            1 MNLVENKLE-----SLPASIGCLSSLEFLHLTRNNL-S-LPEL----PV----LLSHIEARNCKQL----QSLPE---LP   58 (324)
Q Consensus         1 ~~L~~~~l~-----~lP~~i~~l~~L~~L~L~~n~~-~-lP~~----i~----~L~~L~l~~C~~L----~~lP~---lp   58 (324)
                      ++|++|.|.     .+|..+..+++|+.|+|++|.+ . .+..    +.    +|..|+|++|.--    +.+|.   -.
T Consensus        33 L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~  112 (461)
T 1z7x_W           33 VRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTL  112 (461)
T ss_dssp             EEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSC
T ss_pred             EEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccC
Confidence            467777776     5677777788888888888876 3 2222    22    2444777776422    12221   12


Q ss_pred             CCCcEEecCCCC
Q 020571           59 SCPEELDTSILE   70 (324)
Q Consensus        59 ~sL~~L~~~~C~   70 (324)
                      ++|+.|++++|.
T Consensus       113 ~~L~~L~Ls~n~  124 (461)
T 1z7x_W          113 PTLQELHLSDNL  124 (461)
T ss_dssp             TTCCEEECCSSB
T ss_pred             CceeEEECCCCc
Confidence            467777777654

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=90.54  E-value=0.2  Score=39.86  Aligned_cols=33  Identities=36%  Similarity=0.374  Sum_probs=26.5

Q ss_pred             eecCCCCC--ccchhhcCCCCCCEEEccCCCc-cCCcc
Q 020571            2 NLVENKLE--SLPASIGCLSSLEFLHLTRNNL-SLPEL   36 (324)
Q Consensus         2 ~L~~~~l~--~lP~~i~~l~~L~~L~L~~n~~-~lP~~   36 (324)
                      +.++.+|+  .+|..|.  .+|+.|+|++|+| .||..
T Consensus        14 ~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~   49 (130)
T 3rfe_A           14 DCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPG   49 (130)
T ss_dssp             ECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTT
T ss_pred             EeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChh
Confidence            45667888  8997653  5799999999999 99974

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=88.01  E-value=0.078  Score=49.90  Aligned_cols=31  Identities=26%  Similarity=0.279  Sum_probs=16.8

Q ss_pred             CeecCCCCCc-----cchhh-cCCCCCCEEEccCCCc
Q 020571            1 MNLVENKLES-----LPASI-GCLSSLEFLHLTRNNL   31 (324)
Q Consensus         1 ~~L~~~~l~~-----lP~~i-~~l~~L~~L~L~~n~~   31 (324)
                      |+|++|.|+.     +...+ ...++|+.|+|++|.+
T Consensus       131 L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l  167 (372)
T 3un9_A          131 LGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPL  167 (372)
T ss_dssp             EECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCC
T ss_pred             hhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCC
Confidence            3566666642     22222 2345677777777765

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=87.97  E-value=0.3  Score=38.78  Aligned_cols=31  Identities=32%  Similarity=0.497  Sum_probs=27.3

Q ss_pred             CeecCCCCCccchhh-cCCCCCCEEEccCCCc
Q 020571            1 MNLVENKLESLPASI-GCLSSLEFLHLTRNNL   31 (324)
Q Consensus         1 ~~L~~~~l~~lP~~i-~~l~~L~~L~L~~n~~   31 (324)
                      |+|++|+|+.||..+ ..+++|+.|+|++|.+
T Consensus        36 L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           36 LVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             EECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             EECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            589999999998865 6799999999999975

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=86.77  E-value=0.22  Score=46.78  Aligned_cols=69  Identities=17%  Similarity=0.121  Sum_probs=36.0

Q ss_pred             CeecCCCCCc--cchhhcCCCCCCEEEccCCCc-cCC-ccc--------ccCCccccccccccCc-----CC---CCCCC
Q 020571            1 MNLVENKLES--LPASIGCLSSLEFLHLTRNNL-SLP-ELP--------VLLSHIEARNCKQLQS-----LP---ELPSC   60 (324)
Q Consensus         1 ~~L~~~~l~~--lP~~i~~l~~L~~L~L~~n~~-~lP-~~i--------~~L~~L~l~~C~~L~~-----lP---~lp~s   60 (324)
                      |+|++|.|..  +..-...+++|+.|+|++|++ ... ..+        ..|..|+|++|. +..     ++   .-.++
T Consensus       106 L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~  184 (372)
T 3un9_A          106 VNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTS  184 (372)
T ss_dssp             EECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSS
T ss_pred             EEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCC-CChHHHHHHHHHHhcCCC
Confidence            4677777752  222223355778888888876 322 112        123237777664 221     11   11345


Q ss_pred             CcEEecCCCC
Q 020571           61 PEELDTSILE   70 (324)
Q Consensus        61 L~~L~~~~C~   70 (324)
                      |+.|++++|.
T Consensus       185 L~~L~Ls~N~  194 (372)
T 3un9_A          185 VTHLSLLHTG  194 (372)
T ss_dssp             CCEEECTTSS
T ss_pred             cCEEeCCCCC
Confidence            7777777753

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=86.42  E-value=0.8  Score=42.26  Aligned_cols=10  Identities=20%  Similarity=0.315  Sum_probs=5.7

Q ss_pred             CCCCCEEEcc
Q 020571           18 LSSLEFLHLT   27 (324)
Q Consensus        18 l~~L~~L~L~   27 (324)
                      +.+|+.+.+.
T Consensus       262 ~~~l~~i~l~  271 (379)
T 4h09_A          262 CTALKTLNFY  271 (379)
T ss_dssp             CTTCCEEEEC
T ss_pred             eehhcccccc
Confidence            4556666654

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=83.85  E-value=0.83  Score=42.61  Aligned_cols=72  Identities=29%  Similarity=0.334  Sum_probs=31.6

Q ss_pred             cCCCCCCEEEccCCCc-cCCcccccCCccccccccccCcCCCCCCCCcEEec---CCCCCCCccCCCCCcccccceeccC
Q 020571           16 GCLSSLEFLHLTRNNL-SLPELPVLLSHIEARNCKQLQSLPELPSCPEELDT---SILESLSKHFRPTASRKLTYFMFTN   91 (324)
Q Consensus        16 ~~l~~L~~L~L~~n~~-~lP~~i~~L~~L~l~~C~~L~~lP~lp~sL~~L~~---~~C~sL~~~~~~~~~~~~~~l~~~n   91 (324)
                      ..+.+|+.+.+..+ + .|++       --..+|.+|+++ .+|.+++.+.-   .+|++|+.+.-+.....+..--|.+
T Consensus       294 ~~~~~L~~i~l~~~-i~~I~~-------~aF~~c~~L~~i-~lp~~v~~I~~~aF~~c~~L~~i~lp~~l~~I~~~aF~~  364 (394)
T 4fs7_A          294 YGCSSLTEVKLLDS-VKFIGE-------EAFESCTSLVSI-DLPYLVEEIGKRSFRGCTSLSNINFPLSLRKIGANAFQG  364 (394)
T ss_dssp             TTCTTCCEEEECTT-CCEECT-------TTTTTCTTCCEE-CCCTTCCEECTTTTTTCTTCCEECCCTTCCEECTTTBTT
T ss_pred             cccccccccccccc-cceech-------hhhcCCCCCCEE-EeCCcccEEhHHhccCCCCCCEEEECccccEehHHHhhC
Confidence            45677777777543 4 4432       123344444433 23444444431   2455555443222211222233555


Q ss_pred             Ccccc
Q 020571           92 CLKLN   96 (324)
Q Consensus        92 C~~L~   96 (324)
                      |.+|.
T Consensus       365 C~~L~  369 (394)
T 4fs7_A          365 CINLK  369 (394)
T ss_dssp             CTTCC
T ss_pred             CCCCC
Confidence            55554

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=82.21  E-value=1.3  Score=41.17  Aligned_cols=81  Identities=19%  Similarity=0.265  Sum_probs=46.5

Q ss_pred             cCCCCCCEEEccCCCc----------------cCCcccccCCccccccccccCcCCCCCCCCcEEe---cCCCCCCCccC
Q 020571           16 GCLSSLEFLHLTRNNL----------------SLPELPVLLSHIEARNCKQLQSLPELPSCPEELD---TSILESLSKHF   76 (324)
Q Consensus        16 ~~l~~L~~L~L~~n~~----------------~lP~~i~~L~~L~l~~C~~L~~lP~lp~sL~~L~---~~~C~sL~~~~   76 (324)
                      ..+..|+.+.+..+-.                .+|..+..+..--+.+|.+|+++ .+|.+++.+.   -.+|++|+.+.
T Consensus       262 ~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~~i~~I~~~aF~~c~~L~~i-~lp~~v~~I~~~aF~~C~~L~~i~  340 (394)
T 4gt6_A          262 DSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSSRITELPESVFAGCISLKSI-DIPEGITQILDDAFAGCEQLERIA  340 (394)
T ss_dssp             TTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEE-ECCTTCCEECTTTTTTCTTCCEEE
T ss_pred             eecccccEEecccccceecCcccccccccccccCCCcccccCceeecCCCCcCEE-EeCCcccEehHhHhhCCCCCCEEE
Confidence            3456777777754321                23333322222234577777765 3566777764   34788998764


Q ss_pred             CCCCcccccceeccCCcccch
Q 020571           77 RPTASRKLTYFMFTNCLKLNK   97 (324)
Q Consensus        77 ~~~~~~~~~~l~~~nC~~L~~   97 (324)
                      -+.....+..--|.+|.+|..
T Consensus       341 ip~sv~~I~~~aF~~C~~L~~  361 (394)
T 4gt6_A          341 IPSSVTKIPESAFSNCTALNN  361 (394)
T ss_dssp             ECTTCCBCCGGGGTTCTTCCE
T ss_pred             ECcccCEEhHhHhhCCCCCCE
Confidence            433333344556889998864

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=80.75  E-value=2  Score=39.93  Aligned_cols=9  Identities=33%  Similarity=0.778  Sum_probs=4.3

Q ss_pred             eccCCcccc
Q 020571           88 MFTNCLKLN   96 (324)
Q Consensus        88 ~~~nC~~L~   96 (324)
                      -|.+|.+|.
T Consensus       338 aF~~c~~L~  346 (394)
T 4fs7_A          338 SFRGCTSLS  346 (394)
T ss_dssp             TTTTCTTCC
T ss_pred             hccCCCCCC
Confidence            344555553

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=80.62  E-value=0.39  Score=47.01  Aligned_cols=68  Identities=15%  Similarity=0.107  Sum_probs=45.1

Q ss_pred             eecCCC--CC-ccchhhc-CCCCCCEEEccCCCc---cCCcccccCCc---cccccccccC--cCCCC---CCCCcEEec
Q 020571            2 NLVENK--LE-SLPASIG-CLSSLEFLHLTRNNL---SLPELPVLLSH---IEARNCKQLQ--SLPEL---PSCPEELDT   66 (324)
Q Consensus         2 ~L~~~~--l~-~lP~~i~-~l~~L~~L~L~~n~~---~lP~~i~~L~~---L~l~~C~~L~--~lP~l---p~sL~~L~~   66 (324)
                      +|++|+  +. ..+..++ .+++|+.|+|++|++   .+|..+..+++   |+|++|. +.  .++.+   .++|+.|++
T Consensus       442 ~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l  520 (592)
T 3ogk_B          442 AFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWV  520 (592)
T ss_dssp             EEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEE
T ss_pred             EEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeEC
Confidence            455442  44 2333443 488999999999988   35555555554   9999997 32  13322   468999999


Q ss_pred             CCCC
Q 020571           67 SILE   70 (324)
Q Consensus        67 ~~C~   70 (324)
                      ++|.
T Consensus       521 s~n~  524 (592)
T 3ogk_B          521 QGYR  524 (592)
T ss_dssp             ESCB
T ss_pred             cCCc
Confidence            9986

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	324
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-05
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-04

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 43.7 bits (101), Expect = 1e-05
 Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 5/65 (7%)

Query: 1   MNLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSHIEARNCKQLQSLPELPS 59
           +N+  NKL  LPA       LE L  + N+L  +PELP  L  +       L+  P++P 
Sbjct: 289 LNVSNNKLIELPALPP---RLERLIASFNHLAEVPELPQNLKQLHVEYN-PLREFPDIPE 344

Query: 60  CPEEL 64
             E+L
Sbjct: 345 SVEDL 349

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 40.5 bits (93), Expect = 2e-04
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 6/65 (9%)

Query: 1   MNLVENKLE-SLPASIGCLSSLEFLHLTRNNLS--LPELPVL--LSHIEARNCKQLQSLP 55
           ++L  N++  +LP  +  L  L  L+++ NNL   +P+   L         N K L   P
Sbjct: 249 LDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSP 308

Query: 56  ELPSC 60
            LP+C
Sbjct: 309 -LPAC 312

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	324
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.47
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.41
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.13
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.09
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.08
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	97.95
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	97.66
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	97.56
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	97.51
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	97.46
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	97.44
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	97.39
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	97.35
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	97.34
d2ifga3	156	High affinity nerve growth factor receptor, N-term	97.33
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	97.28
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	97.28
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	97.25
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	97.24
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	97.21
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	97.21
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	97.12
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	97.11
d2ifga3	156	High affinity nerve growth factor receptor, N-term	97.05
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	97.04
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	96.97
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	96.63
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	96.56
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	96.46
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	96.44
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	96.09
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	95.77
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	94.7
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	89.04
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	87.19
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	85.33

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.47  E-value=1.6e-07  Score=84.07  Aligned_cols=88  Identities=33%  Similarity=0.324  Sum_probs=72.1

Q ss_pred             CeecCCCCCccchhhcCCCCCCEEEccCCCc-cCCcccccCCccccccccccCcCCCCCCCCcEEecCCCCCCCccCCCC
Q 020571            1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSHIEARNCKQLQSLPELPSCPEELDTSILESLSKHFRPT   79 (324)
Q Consensus         1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~L~l~~C~~L~~lP~lp~sL~~L~~~~C~sL~~~~~~~   79 (324)
                      |||++++|+++|+.   +++|++|+|++|++ .||+.+++|..|++++ .++..++++|++|++|+++++ .++.+|...
T Consensus        43 LdLs~~~L~~lp~~---~~~L~~L~Ls~N~l~~lp~~~~~L~~L~l~~-n~l~~l~~lp~~L~~L~L~~n-~l~~lp~~~  117 (353)
T d1jl5a_          43 LELNNLGLSSLPEL---PPHLESLVASCNSLTELPELPQSLKSLLVDN-NNLKALSDLPPLLEYLGVSNN-QLEKLPELQ  117 (353)
T ss_dssp             EECTTSCCSCCCSC---CTTCSEEECCSSCCSSCCCCCTTCCEEECCS-SCCSCCCSCCTTCCEEECCSS-CCSSCCCCT
T ss_pred             EEeCCCCCCCCCCC---CCCCCEEECCCCCCcccccchhhhhhhhhhh-cccchhhhhcccccccccccc-ccccccchh
Confidence            58999999999964   57899999999999 9999999998898887 478899999999999999986 588887644


Q ss_pred             CcccccceeccCCc
Q 020571           80 ASRKLTYFMFTNCL   93 (324)
Q Consensus        80 ~~~~~~~l~~~nC~   93 (324)
                      ....+..+.+.+|.
T Consensus       118 ~l~~L~~L~l~~~~  131 (353)
T d1jl5a_         118 NSSFLKIIDVDNNS  131 (353)
T ss_dssp             TCTTCCEEECCSSC
T ss_pred             hhccceeecccccc
Confidence            44455566665543

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.41  E-value=1.9e-07  Score=73.15  Aligned_cols=74  Identities=22%  Similarity=0.264  Sum_probs=63.2

Q ss_pred             CeecCCCCCccchhhcCCCCCCEEEccCCCc-cCCcccccCCc---cccccccccCcCCCCC--CCCcEEecCCCCCCCc
Q 020571            1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSH---IEARNCKQLQSLPELP--SCPEELDTSILESLSK   74 (324)
Q Consensus         1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~---L~l~~C~~L~~lP~lp--~sL~~L~~~~C~sL~~   74 (324)
                      |+|++|+|+.+| .++.+++|++|+|++|.+ .+|+.+..+++   |++++ ..++++|.+.  ++|+.|++.++ .+..
T Consensus         3 L~Ls~n~l~~l~-~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~-N~i~~l~~~~~l~~L~~L~l~~N-~i~~   79 (124)
T d1dcea3           3 LHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASD-NALENVDGVANLPRLQELLLCNN-RLQQ   79 (124)
T ss_dssp             EECTTSCCSSCC-CGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCS-SCCCCCGGGTTCSSCCEEECCSS-CCCS
T ss_pred             EEcCCCCCCCCc-ccccCCCCCEEECCCCccCcchhhhhhhhccccccccc-ccccccCccccccccCeEECCCC-ccCC
Confidence            589999999998 499999999999999999 99998988887   99998 6788888764  68999999985 5555


Q ss_pred             cCC
Q 020571           75 HFR   77 (324)
Q Consensus        75 ~~~   77 (324)
                      ++.
T Consensus        80 ~~~   82 (124)
T d1dcea3          80 SAA   82 (124)
T ss_dssp             SST
T ss_pred             CCC
Confidence            553

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.13  E-value=1.3e-06  Score=77.93  Aligned_cols=61  Identities=31%  Similarity=0.378  Sum_probs=54.0

Q ss_pred             cCCCCCCEEEccCCCc-cCCcccccCCccccccccccCcCCCCCCCCcEEecCCCCCCCccCCC
Q 020571           16 GCLSSLEFLHLTRNNL-SLPELPVLLSHIEARNCKQLQSLPELPSCPEELDTSILESLSKHFRP   78 (324)
Q Consensus        16 ~~l~~L~~L~L~~n~~-~lP~~i~~L~~L~l~~C~~L~~lP~lp~sL~~L~~~~C~sL~~~~~~   78 (324)
                      ..+++|++|+|++|++ .||+.+.+|+.|+|++| +++++|+++.+|+.|++++|. |+.+|..
T Consensus       281 ~~~~~L~~L~Ls~N~l~~lp~~~~~L~~L~L~~N-~L~~l~~~~~~L~~L~L~~N~-L~~lp~~  342 (353)
T d1jl5a_         281 DLPPSLEELNVSNNKLIELPALPPRLERLIASFN-HLAEVPELPQNLKQLHVEYNP-LREFPDI  342 (353)
T ss_dssp             CCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSC-CSSCCCC
T ss_pred             ccCCCCCEEECCCCccCccccccCCCCEEECCCC-cCCccccccCCCCEEECcCCc-CCCCCcc
Confidence            3468999999999999 99999999888999875 689999999999999999985 9888753

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.09  E-value=2.1e-06  Score=67.02  Aligned_cols=66  Identities=24%  Similarity=0.331  Sum_probs=54.9

Q ss_pred             CeecCCCCCccchhhcCCCCCCEEEccCCCc-cCCcccccCCc---cccccccccCcCCCCC-----CCCcEEecCC
Q 020571            1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSH---IEARNCKQLQSLPELP-----SCPEELDTSI   68 (324)
Q Consensus         1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~---L~l~~C~~L~~lP~lp-----~sL~~L~~~~   68 (324)
                      ++|++|.|+++|+.++.+++|+.|++++|.+ .+|. +.++++   |++++ .++..+|.+.     ++|+.|++.+
T Consensus        25 L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~~-~~~l~~L~~L~l~~-N~i~~~~~~~~l~~~~~L~~L~l~~   99 (124)
T d1dcea3          25 LDLSHNRLRALPPALAALRCLEVLQASDNALENVDG-VANLPRLQELLLCN-NRLQQSAAIQPLVSCPRLVLLNLQG   99 (124)
T ss_dssp             EECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCS-SCCCSSSTTGGGGGCTTCCEEECTT
T ss_pred             EECCCCccCcchhhhhhhhcccccccccccccccCc-cccccccCeEECCC-CccCCCCCchhhcCCCCCCEEECCC
Confidence            5899999999999999999999999999999 9985 888776   88987 5677776542     5677777766

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.08  E-value=1.8e-06  Score=70.61  Aligned_cols=89  Identities=19%  Similarity=0.188  Sum_probs=64.6

Q ss_pred             CeecCCCCCccchhhcCCCCCCEEEccCCCc-cCCcccccCCc---cccccccccCcCCC----CCCCCcEEecCCCCCC
Q 020571            1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSH---IEARNCKQLQSLPE----LPSCPEELDTSILESL   72 (324)
Q Consensus         1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~---L~l~~C~~L~~lP~----lp~sL~~L~~~~C~sL   72 (324)
                      ++|++|+|+.+|.-...+++|+.|+|++|.+ .++ .+..+++   |++++|+ +..+|.    -.++|+.|++.++ .+
T Consensus        23 L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~N~-i~~l~~~~~~~l~~L~~L~L~~N-~i   99 (162)
T d1a9na_          23 LDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNR-ICRIGEGLDQALPDLTELILTNN-SL   99 (162)
T ss_dssp             EECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCSSC-CCEECSCHHHHCTTCCEEECCSC-CC
T ss_pred             EECCCCCCCccCccccccccCCEEECCCCCCCccC-CcccCcchhhhhccccc-ccCCCccccccccccccceeccc-cc
Confidence            5789999999987667899999999999999 886 4766666   9999864 677764    2478999999986 45


Q ss_pred             CccCC--C-CCcccccceeccCC
Q 020571           73 SKHFR--P-TASRKLTYFMFTNC   92 (324)
Q Consensus        73 ~~~~~--~-~~~~~~~~l~~~nC   92 (324)
                      ..++.  . .....+..+.+.+|
T Consensus       100 ~~~~~l~~l~~l~~L~~L~l~~N  122 (162)
T d1a9na_         100 VELGDLDPLASLKSLTYLCILRN  122 (162)
T ss_dssp             CCGGGGGGGGGCTTCCEEECCSS
T ss_pred             cccccccccccccccchhhcCCC
Confidence            54442  1 12244556666665

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=97.95  E-value=2.6e-06  Score=76.03  Aligned_cols=79  Identities=22%  Similarity=0.268  Sum_probs=62.3

Q ss_pred             CeecCCCCC---ccchhhcCCCCCCEEEccC-CCc--cCCcccccCCc---cccccccccCcCCCC---CCCCcEEecCC
Q 020571            1 MNLVENKLE---SLPASIGCLSSLEFLHLTR-NNL--SLPELPVLLSH---IEARNCKQLQSLPEL---PSCPEELDTSI   68 (324)
Q Consensus         1 ~~L~~~~l~---~lP~~i~~l~~L~~L~L~~-n~~--~lP~~i~~L~~---L~l~~C~~L~~lP~l---p~sL~~L~~~~   68 (324)
                      ++|+++++.   .+|+.|+.|++|++|+|++ |++  .||++|++|++   |+|++++.....|..   ...|+.+++..
T Consensus        55 L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~  134 (313)
T d1ogqa_          55 LDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSY  134 (313)
T ss_dssp             EEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCS
T ss_pred             EECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccccccc
Confidence            578898886   6999999999999999997 677  79999999988   999986544434432   36789999988


Q ss_pred             CCCCCccCCCC
Q 020571           69 LESLSKHFRPT   79 (324)
Q Consensus        69 C~sL~~~~~~~   79 (324)
                      +.....+|..+
T Consensus       135 N~~~~~~p~~l  145 (313)
T d1ogqa_         135 NALSGTLPPSI  145 (313)
T ss_dssp             SEEESCCCGGG
T ss_pred             ccccccCchhh
Confidence            77666666443

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.66  E-value=3.2e-05  Score=67.34  Aligned_cols=88  Identities=19%  Similarity=0.133  Sum_probs=63.3

Q ss_pred             eecCCCCCccchhhcCCCCCCEEEccCCCc-cCCc-ccccCCc---cccccccccCcCCCC--CCCCcEEecCCCCCCCc
Q 020571            2 NLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPE-LPVLLSH---IEARNCKQLQSLPEL--PSCPEELDTSILESLSK   74 (324)
Q Consensus         2 ~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~-~i~~L~~---L~l~~C~~L~~lP~l--p~sL~~L~~~~C~sL~~   74 (324)
                      +.++++|++||++|.  ++|++|+|++|.+ .+|. .+.++++   |+|+++ ++..+|..  .++|+.|+++++ .+..
T Consensus        16 ~C~~~~L~~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N-~l~~l~~~~~l~~L~~L~Ls~N-~l~~   91 (266)
T d1p9ag_          16 NCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVDGTLPVLGTLDLSHN-QLQS   91 (266)
T ss_dssp             ECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEECCSCCTTCCEEECCSS-CCSS
T ss_pred             EccCCCCCeeCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccc-cccccccccccccccccccccc-cccc
Confidence            445668899998875  6899999999999 8884 5777776   999885 67777753  478999999986 5665


Q ss_pred             cCCCCC-cccccceeccCCc
Q 020571           75 HFRPTA-SRKLTYFMFTNCL   93 (324)
Q Consensus        75 ~~~~~~-~~~~~~l~~~nC~   93 (324)
                      ++..+. ...+..|.+.++.
T Consensus        92 ~~~~~~~l~~L~~L~l~~~~  111 (266)
T d1p9ag_          92 LPLLGQTLPALTVLDVSFNR  111 (266)
T ss_dssp             CCCCTTTCTTCCEEECCSSC
T ss_pred             cccccccccccccccccccc
Confidence            554332 2445566665543

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.56  E-value=7.4e-05  Score=64.91  Aligned_cols=68  Identities=31%  Similarity=0.327  Sum_probs=54.9

Q ss_pred             CeecCCCCCccch-hhcCCCCCCEEEccCCCc-cCCcccccCCc---cccccccccCcCCCCC---CCCcEEecCCCC
Q 020571            1 MNLVENKLESLPA-SIGCLSSLEFLHLTRNNL-SLPELPVLLSH---IEARNCKQLQSLPELP---SCPEELDTSILE   70 (324)
Q Consensus         1 ~~L~~~~l~~lP~-~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~---L~l~~C~~L~~lP~lp---~sL~~L~~~~C~   70 (324)
                      |+|++|+|+.+|. .+..+++|+.|+|++|++ .+|. +..+++   |+|+++ ++..+|...   ++|+.|+++++.
T Consensus        36 L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~-~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~L~~L~l~~~~  111 (266)
T d1p9ag_          36 LHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-DGTLPVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVSFNR  111 (266)
T ss_dssp             EECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-CSCCTTCCEEECCSS-CCSSCCCCTTTCTTCCEEECCSSC
T ss_pred             EECcCCcCCCcCHHHhhcccccccccccccccccccc-ccccccccccccccc-cccccccccccccccccccccccc
Confidence            5899999999985 588999999999999999 9885 455555   999985 567666543   678999998864

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.51  E-value=2.3e-05  Score=63.70  Aligned_cols=68  Identities=19%  Similarity=0.170  Sum_probs=54.5

Q ss_pred             CeecCCCCCccchhhcCCCCCCEEEccCCCc-cCCccc-ccCCc---cccccccccCcCCCC-----CCCCcEEecCCCC
Q 020571            1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELP-VLLSH---IEARNCKQLQSLPEL-----PSCPEELDTSILE   70 (324)
Q Consensus         1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~~i-~~L~~---L~l~~C~~L~~lP~l-----p~sL~~L~~~~C~   70 (324)
                      +||++|.|.+++ .+..+++|+.|+|++|.+ .+|..+ ..++.   |+|+++ ++..++++     .++|+.|++.+|.
T Consensus        46 L~Ls~N~i~~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N-~i~~~~~l~~l~~l~~L~~L~l~~N~  123 (162)
T d1a9na_          46 IDFSDNEIRKLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNP  123 (162)
T ss_dssp             EECCSSCCCEEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSG
T ss_pred             EECCCCCCCccC-CcccCcchhhhhcccccccCCCccccccccccccceeccc-cccccccccccccccccchhhcCCCc
Confidence            589999999996 589999999999999999 998754 44555   999885 45666543     2679999999973

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.46  E-value=0.00013  Score=60.29  Aligned_cols=76  Identities=20%  Similarity=0.173  Sum_probs=39.7

Q ss_pred             CeecCCCCCc-c-chhhcCCCCCCEEEccCCCc-cCC-cccccCCc---cccccccccCcCCCC----CCCCcEEecCCC
Q 020571            1 MNLVENKLES-L-PASIGCLSSLEFLHLTRNNL-SLP-ELPVLLSH---IEARNCKQLQSLPEL----PSCPEELDTSIL   69 (324)
Q Consensus         1 ~~L~~~~l~~-l-P~~i~~l~~L~~L~L~~n~~-~lP-~~i~~L~~---L~l~~C~~L~~lP~l----p~sL~~L~~~~C   69 (324)
                      |+|++|.|+. + +..++.+++|+.|+|++|++ .+| ..+..+++   |+|++ .+++.+|.-    .++|+.|+++++
T Consensus        34 L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~-N~l~~l~~~~F~~l~~L~~L~L~~N  112 (192)
T d1w8aa_          34 LLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE-NKIKEISNKMFLGLHQLKTLNLYDN  112 (192)
T ss_dssp             EECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS-CCCCEECSSSSTTCTTCCEEECCSS
T ss_pred             EEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc-ccccccCHHHHhCCCcccccccCCc
Confidence            3555665543 3 22335566666666666666 443 23343433   66665 345555431    255666777663


Q ss_pred             CCCCccCCC
Q 020571           70 ESLSKHFRP   78 (324)
Q Consensus        70 ~sL~~~~~~   78 (324)
                       .|.+++..
T Consensus       113 -~l~~i~~~  120 (192)
T d1w8aa_         113 -QISCVMPG  120 (192)
T ss_dssp             -CCCEECTT
T ss_pred             -cccccCHH
Confidence             56666543

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.44  E-value=0.00011  Score=61.09  Aligned_cols=66  Identities=17%  Similarity=0.173  Sum_probs=37.0

Q ss_pred             eecCCCCCccchhhcCCCCCCEEEccCCCc-cCCcccccCCc---cccccccccCcCCCC--CCCCcEEecCCCC
Q 020571            2 NLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSH---IEARNCKQLQSLPEL--PSCPEELDTSILE   70 (324)
Q Consensus         2 ~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~---L~l~~C~~L~~lP~l--p~sL~~L~~~~C~   70 (324)
                      ++++|+|..++ .+..+++|++|+|++|.+ .++. ++++++   |++++| .+..++.+  ...|+.|++.+|.
T Consensus        46 ~l~~~~i~~l~-~l~~l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n-~~~~~~~l~~l~~L~~L~l~~~~  117 (199)
T d2omxa2          46 QADRLGIKSID-GVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNN-QIADITPLANLTNLTGLTLFNNQ  117 (199)
T ss_dssp             ECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGGGTTCTTCSEEECCSSC
T ss_pred             ECCCCCCCCcc-ccccCCCcCcCccccccccCccc-ccCCccccccccccc-ccccccccccccccccccccccc
Confidence            45566666654 466666666666666666 6554 555544   666553 33444432  2456666665543

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.39  E-value=0.00011  Score=61.57  Aligned_cols=67  Identities=16%  Similarity=0.176  Sum_probs=45.3

Q ss_pred             CeecCCCCCccchhhcCCCCCCEEEccCCCc-cCCcccccCCc---cccccccccCcCCCCC--CCCcEEecCCCC
Q 020571            1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSH---IEARNCKQLQSLPELP--SCPEELDTSILE   70 (324)
Q Consensus         1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~---L~l~~C~~L~~lP~lp--~sL~~L~~~~C~   70 (324)
                      |++++|.++.++ .|..+++|+.|+|++|.+ .+|. ++.+++   |++++| ++..+|.+.  ++|+.|++.+|.
T Consensus        51 L~l~~~~i~~l~-~l~~l~~L~~L~L~~n~i~~l~~-~~~l~~L~~L~l~~n-~i~~l~~l~~l~~L~~L~l~~~~  123 (210)
T d1h6ta2          51 IIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDEN-KVKDLSSLKDLKKLKSLSLEHNG  123 (210)
T ss_dssp             EECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCGGGGTTCTTCCEEECTTSC
T ss_pred             EECcCCCCCCch-hHhhCCCCCEEeCCCccccCccc-cccCccccccccccc-ccccccccccccccccccccccc
Confidence            356677777766 477788888888888888 7774 556655   777764 456665443  567777777753

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.35  E-value=0.00021  Score=59.20  Aligned_cols=88  Identities=16%  Similarity=0.202  Sum_probs=60.0

Q ss_pred             CeecCCCCCccchhhcCCCCCCEEEccCCCc-cCCcccccCCc---cccccccccCcCCCC--CCCCcEEecCCCCCCCc
Q 020571            1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSH---IEARNCKQLQSLPEL--PSCPEELDTSILESLSK   74 (324)
Q Consensus         1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~---L~l~~C~~L~~lP~l--p~sL~~L~~~~C~sL~~   74 (324)
                      |+|++|.|+.++. ++.+++|+.|++++|.+ .+|. +.++..   |++++|... .++.+  .++|+.|+++++ .+..
T Consensus        67 L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n~~~~~~~-l~~l~~L~~L~l~~~~~~-~~~~~~~l~~L~~L~l~~n-~l~~  142 (199)
T d2omxa2          67 INFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQIT-DIDPLKNLTNLNRLELSSN-TISD  142 (199)
T ss_dssp             EECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCC-CCGGGTTCTTCSEEECCSS-CCCC
T ss_pred             CccccccccCccc-ccCCcccccccccccccccccc-cccccccccccccccccc-cccccchhhhhHHhhhhhh-hhcc
Confidence            5789999999885 99999999999999999 8885 666665   788765543 33322  267888888876 3554


Q ss_pred             cCCCCCcccccceeccCC
Q 020571           75 HFRPTASRKLTYFMFTNC   92 (324)
Q Consensus        75 ~~~~~~~~~~~~l~~~nC   92 (324)
                      ++.-.....+..|.+.+|
T Consensus       143 ~~~l~~~~~L~~L~l~~n  160 (199)
T d2omxa2         143 ISALSGLTSLQQLNFSSN  160 (199)
T ss_dssp             CGGGTTCTTCSEEECCSS
T ss_pred             cccccccccccccccccc
Confidence            443222234445555443

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=97.34  E-value=3.9e-05  Score=68.02  Aligned_cols=67  Identities=19%  Similarity=0.176  Sum_probs=37.1

Q ss_pred             ccchhhcCCCCCCEEEccCCCc-cCCcccccCCc---cccccccccCcCCCC---CCCCcEEecCCCCCCC-ccCC
Q 020571           10 SLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSH---IEARNCKQLQSLPEL---PSCPEELDTSILESLS-KHFR   77 (324)
Q Consensus        10 ~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~---L~l~~C~~L~~lP~l---p~sL~~L~~~~C~sL~-~~~~   77 (324)
                      .+|..++.+++|+.|++++|.+ ..|..+..++.   |+|++++....+|+-   .++|+.|+++++ .|. .+|.
T Consensus       212 ~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N-~l~g~iP~  286 (313)
T d1ogqa_         212 DASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN-NLCGEIPQ  286 (313)
T ss_dssp             CCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSS-EEEEECCC
T ss_pred             cccccccccccccccccccccccccccccccccccccccCccCeecccCChHHhCCCCCCEEECcCC-cccccCCC
Confidence            4555666666666666666666 44444554444   666665544455542   245666666664 333 4553

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.33  E-value=0.00023  Score=57.13  Aligned_cols=87  Identities=13%  Similarity=0.027  Sum_probs=65.0

Q ss_pred             eecCCCCCccchhhcCCCCCCEEEccCCC-c-cCCc-ccccCCc---cccccccccCcCCCC----CCCCcEEecCCCCC
Q 020571            2 NLVENKLESLPASIGCLSSLEFLHLTRNN-L-SLPE-LPVLLSH---IEARNCKQLQSLPEL----PSCPEELDTSILES   71 (324)
Q Consensus         2 ~L~~~~l~~lP~~i~~l~~L~~L~L~~n~-~-~lP~-~i~~L~~---L~l~~C~~L~~lP~l----p~sL~~L~~~~C~s   71 (324)
                      +.+++++.++|..+..+++|+.|+|.+|+ + .||. .+.++++   |+|++ .+|+.|+.-    .++|+.|++++ ..
T Consensus        14 ~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~-N~l~~i~~~~f~~l~~L~~L~Ls~-N~   91 (156)
T d2ifga3          14 RCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVK-SGLRFVAPDAFHFTPRLSRLNLSF-NA   91 (156)
T ss_dssp             ECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCS-SCCCEECTTGGGSCSCCCEEECCS-SC
T ss_pred             EecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeec-cccCCcccccccccccccceeccC-CC
Confidence            45666788899999999999999998775 8 8875 4777766   99998 468888642    36899999998 46


Q ss_pred             CCccCCCC-Ccccccceecc
Q 020571           72 LSKHFRPT-ASRKLTYFMFT   90 (324)
Q Consensus        72 L~~~~~~~-~~~~~~~l~~~   90 (324)
                      |++++... ....+..|.+.
T Consensus        92 l~~l~~~~~~~~~l~~L~L~  111 (156)
T d2ifga3          92 LESLSWKTVQGLSLQELVLS  111 (156)
T ss_dssp             CSCCCSTTTCSCCCCEEECC
T ss_pred             CcccChhhhccccccccccC
Confidence            88888653 23344455553

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.28  E-value=0.00015  Score=61.22  Aligned_cols=83  Identities=16%  Similarity=0.229  Sum_probs=53.1

Q ss_pred             ecCCCCCccchhhcCCCCCCEEEccCCCc-cCCcccccCCc---cccccccccCcCCCCC--CCCcEEecCCCCCCCccC
Q 020571            3 LVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSH---IEARNCKQLQSLPELP--SCPEELDTSILESLSKHF   76 (324)
Q Consensus         3 L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~---L~l~~C~~L~~lP~lp--~sL~~L~~~~C~sL~~~~   76 (324)
                      ++++.+...+ .+..+++|+.|++++|.+ .++. ++++++   |+|++| ++..+|.+.  ++|+.|++++| .++.++
T Consensus       136 ~~~~~~~~~~-~~~~~~~L~~L~l~~n~~~~~~~-l~~l~~L~~L~Ls~n-~l~~l~~l~~l~~L~~L~Ls~N-~lt~i~  211 (227)
T d1h6ua2         136 LDLNQITNIS-PLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDN-KISDISPLASLPNLIEVHLKNN-QISDVS  211 (227)
T ss_dssp             CCSSCCCCCG-GGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGGGGGCTTCCEEECTTS-CCCBCG
T ss_pred             chhhhhchhh-hhccccccccccccccccccchh-hcccccceecccCCC-ccCCChhhcCCCCCCEEECcCC-cCCCCc
Confidence            3444554443 366778888888888887 6654 666665   888876 577777543  67888888887 577766


Q ss_pred             CCCCcccccceec
Q 020571           77 RPTASRKLTYFMF   89 (324)
Q Consensus        77 ~~~~~~~~~~l~~   89 (324)
                      .-.....+..|++
T Consensus       212 ~l~~l~~L~~L~l  224 (227)
T d1h6ua2         212 PLANTSNLFIVTL  224 (227)
T ss_dssp             GGTTCTTCCEEEE
T ss_pred             ccccCCCCCEEEe
Confidence            3222233444444

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.28  E-value=0.00034  Score=57.53  Aligned_cols=87  Identities=18%  Similarity=0.139  Sum_probs=60.7

Q ss_pred             eecCCCCCccchhhcCCCCCCEEEccCCCc-c-CC-cccccCCc---cccccccccCcCCCC---CCCCcEEecCCCCCC
Q 020571            2 NLVENKLESLPASIGCLSSLEFLHLTRNNL-S-LP-ELPVLLSH---IEARNCKQLQSLPEL---PSCPEELDTSILESL   72 (324)
Q Consensus         2 ~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~-lP-~~i~~L~~---L~l~~C~~L~~lP~l---p~sL~~L~~~~C~sL   72 (324)
                      +.++++|+.||.+|.  +++++|+|++|.+ . ++ ..+.++++   |+|+++....-.++.   ..+|+.|+++++ .|
T Consensus        14 ~Cs~~~L~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N-~l   90 (192)
T d1w8aa_          14 DCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN-KI   90 (192)
T ss_dssp             ECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC-CC
T ss_pred             EEeCCCcCccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccc-cc
Confidence            567788999999875  7899999999999 6 43 34566665   999885544333332   478999999985 78


Q ss_pred             CccCCC-CC-cccccceeccC
Q 020571           73 SKHFRP-TA-SRKLTYFMFTN   91 (324)
Q Consensus        73 ~~~~~~-~~-~~~~~~l~~~n   91 (324)
                      +.++.. +. ...+..|.+.+
T Consensus        91 ~~l~~~~F~~l~~L~~L~L~~  111 (192)
T d1w8aa_          91 KEISNKMFLGLHQLKTLNLYD  111 (192)
T ss_dssp             CEECSSSSTTCTTCCEEECCS
T ss_pred             cccCHHHHhCCCcccccccCC
Confidence            888754 22 24444555533

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.25  E-value=0.00019  Score=63.08  Aligned_cols=75  Identities=21%  Similarity=0.171  Sum_probs=56.3

Q ss_pred             CeecCCCCC-ccchhhcCCCCCCEEEccCCCc-cCC-cccccCCc---cccccccccCcCCC-C--CCCCcEEecCCCCC
Q 020571            1 MNLVENKLE-SLPASIGCLSSLEFLHLTRNNL-SLP-ELPVLLSH---IEARNCKQLQSLPE-L--PSCPEELDTSILES   71 (324)
Q Consensus         1 ~~L~~~~l~-~lP~~i~~l~~L~~L~L~~n~~-~lP-~~i~~L~~---L~l~~C~~L~~lP~-l--p~sL~~L~~~~C~s   71 (324)
                      +++++|.+. ..|..+..++.++.|++++|.+ .++ ..+.++++   |+|++| ++.++|. +  .++|+.|+++++ .
T Consensus       176 L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N-~L~~lp~~l~~l~~L~~L~Ls~N-~  253 (305)
T d1xkua_         176 LHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNN-N  253 (305)
T ss_dssp             EECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSS-C
T ss_pred             EECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeecccc-cccccccccccccCCCEEECCCC-c
Confidence            356777655 4567788889999999999999 764 45666666   899986 6788875 2  268899999985 5


Q ss_pred             CCccCC
Q 020571           72 LSKHFR   77 (324)
Q Consensus        72 L~~~~~   77 (324)
                      |++++.
T Consensus       254 i~~i~~  259 (305)
T d1xkua_         254 ISAIGS  259 (305)
T ss_dssp             CCCCCT
T ss_pred             cCccCh
Confidence            887754

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.24  E-value=0.00013  Score=65.44  Aligned_cols=85  Identities=21%  Similarity=0.251  Sum_probs=59.2

Q ss_pred             eecCCCCCccchhhcCCCCCCEEEccCCCc-cCCcccccCCc---cccccccccCcCCCCC--CCCcEEecCCCCCCCcc
Q 020571            2 NLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSH---IEARNCKQLQSLPELP--SCPEELDTSILESLSKH   75 (324)
Q Consensus         2 ~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~---L~l~~C~~L~~lP~lp--~sL~~L~~~~C~sL~~~   75 (324)
                      .+..|.+..++ .+..+.+|+.|+|++|++ .++. +..+++   |++++| +++.+|.+.  ++|+.|++++| .++.+
T Consensus       291 ~~~~n~l~~~~-~~~~~~~l~~L~ls~n~l~~l~~-l~~l~~L~~L~L~~n-~l~~l~~l~~l~~L~~L~l~~N-~l~~l  366 (384)
T d2omza2         291 ELNENQLEDIS-PISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFANN-KVSDVSSLANLTNINWLSAGHN-QISDL  366 (384)
T ss_dssp             ECCSSCCSCCG-GGGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSS-CCCCCGGGGGCTTCCEEECCSS-CCCBC
T ss_pred             ccccccccccc-ccchhcccCeEECCCCCCCCCcc-cccCCCCCEEECCCC-CCCCChhHcCCCCCCEEECCCC-cCCCC
Confidence            34556776665 488899999999999999 8874 666665   999987 667776543  68999999876 67766


Q ss_pred             CCCCCcccccceecc
Q 020571           76 FRPTASRKLTYFMFT   90 (324)
Q Consensus        76 ~~~~~~~~~~~l~~~   90 (324)
                      +.-....++..|+++
T Consensus       367 ~~l~~l~~L~~L~L~  381 (384)
T d2omza2         367 TPLANLTRITQLGLN  381 (384)
T ss_dssp             GGGTTCTTCSEEECC
T ss_pred             hhhccCCCCCEeeCC
Confidence            532222344445443

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.21  E-value=0.00022  Score=63.88  Aligned_cols=87  Identities=13%  Similarity=0.136  Sum_probs=63.7

Q ss_pred             eecCCCCCccchhhcCCCCCCEEEccCCCc-cCCcccccCCc---cccccccccCcCCCC--CCCCcEEecCCCCCCCcc
Q 020571            2 NLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSH---IEARNCKQLQSLPEL--PSCPEELDTSILESLSKH   75 (324)
Q Consensus         2 ~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~---L~l~~C~~L~~lP~l--p~sL~~L~~~~C~sL~~~   75 (324)
                      +++++.+..++. +..+..++.+.+.+|.+ .++. +..+..   |+++++ ++..++.+  .++|+.|++++| .|+.+
T Consensus       269 ~l~~~~l~~~~~-~~~~~~l~~l~~~~n~l~~~~~-~~~~~~l~~L~ls~n-~l~~l~~l~~l~~L~~L~L~~n-~l~~l  344 (384)
T d2omza2         269 KLGANQISNISP-LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFN-NISDISPVSSLTKLQRLFFANN-KVSDV  344 (384)
T ss_dssp             ECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSS-CCSCCGGGGGCTTCCEEECCSS-CCCCC
T ss_pred             eccCcccCCCCc-cccccccccccccccccccccc-cchhcccCeEECCCC-CCCCCcccccCCCCCEEECCCC-CCCCC
Confidence            567788888874 78889999999999999 7664 555555   888875 56666543  378999999998 67776


Q ss_pred             CCCCCcccccceeccCC
Q 020571           76 FRPTASRKLTYFMFTNC   92 (324)
Q Consensus        76 ~~~~~~~~~~~l~~~nC   92 (324)
                      +.-....++..|++.+|
T Consensus       345 ~~l~~l~~L~~L~l~~N  361 (384)
T d2omza2         345 SSLANLTNINWLSAGHN  361 (384)
T ss_dssp             GGGGGCTTCCEEECCSS
T ss_pred             hhHcCCCCCCEEECCCC
Confidence            64333455667787665

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.21  E-value=0.00012  Score=61.79  Aligned_cols=64  Identities=17%  Similarity=0.258  Sum_probs=50.2

Q ss_pred             CeecCCCCCccchhhcCCCCCCEEEccCCCc-cCCcccccCCc---cccccccccCcCCCC--CCCCcEEecC
Q 020571            1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSH---IEARNCKQLQSLPEL--PSCPEELDTS   67 (324)
Q Consensus         1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~---L~l~~C~~L~~lP~l--p~sL~~L~~~   67 (324)
                      +++++|.+..++. ++.+++|+.|+|++|.+ .+|. +.++++   |+|++| ++.++|.+  .++|+.|++.
T Consensus       156 L~l~~n~~~~~~~-l~~l~~L~~L~Ls~n~l~~l~~-l~~l~~L~~L~Ls~N-~lt~i~~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         156 LSIGNAQVSDLTP-LANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNN-QISDVSPLANTSNLFIVTLT  225 (227)
T ss_dssp             EECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTS-CCCBCGGGTTCTTCCEEEEE
T ss_pred             ccccccccccchh-hcccccceecccCCCccCCChh-hcCCCCCCEEECcCC-cCCCCcccccCCCCCEEEee
Confidence            3567777777664 89999999999999999 9885 666666   999997 68888754  3677777664

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=97.12  E-value=8.2e-06  Score=68.64  Aligned_cols=82  Identities=17%  Similarity=0.204  Sum_probs=59.5

Q ss_pred             CCCccchhhcCCCCCCEEEccCCCc-cCCcccccCCc---cccccccccCcCCCCC---CCCcEEecCCCCCCCccCCCC
Q 020571            7 KLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSH---IEARNCKQLQSLPELP---SCPEELDTSILESLSKHFRPT   79 (324)
Q Consensus         7 ~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~---L~l~~C~~L~~lP~lp---~sL~~L~~~~C~sL~~~~~~~   79 (324)
                      .|+++|.++..+++|+.|+|++|++ .|+ .+..|++   |+|++| .+.++|.+.   ++|+.|++.++ .+..++...
T Consensus        36 ~i~~l~~sl~~L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N-~i~~i~~~~~~~~~L~~L~l~~N-~i~~l~~~~  112 (198)
T d1m9la_          36 PIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISYN-QIASLSGIE  112 (198)
T ss_dssp             TCCCCHHHHHHTTTCCEEECSEEEESCCC-CHHHHTTCCEEECCEE-EECSCSSHHHHHHHCCEEECSEE-ECCCHHHHH
T ss_pred             chhhhhhHHhcccccceeECcccCCCCcc-cccCCccccChhhccc-ccccccccccccccccccccccc-ccccccccc
Confidence            4678889999999999999999999 997 4776666   999875 577887653   57899999885 566654222


Q ss_pred             CcccccceeccC
Q 020571           80 ASRKLTYFMFTN   91 (324)
Q Consensus        80 ~~~~~~~l~~~n   91 (324)
                      ....+..|++++
T Consensus       113 ~l~~L~~L~L~~  124 (198)
T d1m9la_         113 KLVNLRVLYMSN  124 (198)
T ss_dssp             HHHHSSEEEESE
T ss_pred             cccccccccccc
Confidence            223344555544

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.11  E-value=0.00033  Score=58.57  Aligned_cols=66  Identities=21%  Similarity=0.209  Sum_probs=49.7

Q ss_pred             CeecCCCCCccchhhcCCCCCCEEEccCCCc-cCCcccccCCc---cccccccccCcCCCCC--CCCcEEecCCC
Q 020571            1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVLLSH---IEARNCKQLQSLPELP--SCPEELDTSIL   69 (324)
Q Consensus         1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~~L~~---L~l~~C~~L~~lP~lp--~sL~~L~~~~C   69 (324)
                      |+|++|.|+.++ .++.+++|++|++++|.+ .+|. +..+++   |++++|.. ..++.+.  +.++.+++.++
T Consensus        73 L~L~~n~i~~l~-~~~~l~~L~~L~l~~n~i~~l~~-l~~l~~L~~L~l~~~~~-~~~~~l~~l~~l~~l~~~~n  144 (210)
T d1h6ta2          73 LFLNGNKLTDIK-PLANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEHNGI-SDINGLVHLPQLESLYLGNN  144 (210)
T ss_dssp             EECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECTTSCC-CCCGGGGGCTTCCEEECCSS
T ss_pred             EeCCCccccCcc-ccccCcccccccccccccccccc-ccccccccccccccccc-cccccccccccccccccccc
Confidence            578899999988 488999999999999999 9884 777766   88877643 3444332  56677777664

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.05  E-value=0.00041  Score=55.56  Aligned_cols=66  Identities=18%  Similarity=0.135  Sum_probs=51.1

Q ss_pred             eecCC-CCCccch-hhcCCCCCCEEEccCCCc-cCCc-ccccCCc---cccccccccCcCCCC---CCCCcEEecCC
Q 020571            2 NLVEN-KLESLPA-SIGCLSSLEFLHLTRNNL-SLPE-LPVLLSH---IEARNCKQLQSLPEL---PSCPEELDTSI   68 (324)
Q Consensus         2 ~L~~~-~l~~lP~-~i~~l~~L~~L~L~~n~~-~lP~-~i~~L~~---L~l~~C~~L~~lP~l---p~sL~~L~~~~   68 (324)
                      +|.++ .|+.++. .+..+++|+.|+|++|++ .|+. .+..+++   |+|++ ++|+++|.-   ..+|+.|++++
T Consensus        37 ~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~-N~l~~l~~~~~~~~~l~~L~L~~  112 (156)
T d2ifga3          37 YIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF-NALESLSWKTVQGLSLQELVLSG  112 (156)
T ss_dssp             ECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS-SCCSCCCSTTTCSCCCCEEECCS
T ss_pred             ecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccC-CCCcccChhhhccccccccccCC
Confidence            56555 5888875 478899999999999999 8854 5777776   99997 678888753   23677887776

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.04  E-value=0.00052  Score=60.08  Aligned_cols=70  Identities=20%  Similarity=0.123  Sum_probs=52.7

Q ss_pred             CCCccchhhcCCCCCCEEEccCCCc-cCCc-ccccCCc---cccccccccCcCCCC---CCCCcEEecCCCCCCCccCCC
Q 020571            7 KLESLPASIGCLSSLEFLHLTRNNL-SLPE-LPVLLSH---IEARNCKQLQSLPEL---PSCPEELDTSILESLSKHFRP   78 (324)
Q Consensus         7 ~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~-~i~~L~~---L~l~~C~~L~~lP~l---p~sL~~L~~~~C~sL~~~~~~   78 (324)
                      +|+++|.+|.  ++|++|+|++|++ .||. ++.++++   |++++|+...-.|..   ...|+.|++.++ .++.++..
T Consensus        21 ~L~~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n-~l~~l~~~   97 (305)
T d1xkua_          21 GLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN-QLKELPEK   97 (305)
T ss_dssp             CCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCSBCCSS
T ss_pred             CCCccCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCC-ccCcCccc
Confidence            5888998774  6899999999999 9986 5777776   888887655444542   367889999886 67877754


Q ss_pred             C
Q 020571           79 T   79 (324)
Q Consensus        79 ~   79 (324)
                      .
T Consensus        98 ~   98 (305)
T d1xkua_          98 M   98 (305)
T ss_dssp             C
T ss_pred             h
Confidence            3

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=96.97  E-value=4e-06  Score=70.62  Aligned_cols=89  Identities=21%  Similarity=0.252  Sum_probs=63.0

Q ss_pred             CeecCCCCCccchhhcCCCCCCEEEccCCCc-cCCccccc---CCccccccccccCcCCCCC--CCCcEEecCCCCCCCc
Q 020571            1 MNLVENKLESLPASIGCLSSLEFLHLTRNNL-SLPELPVL---LSHIEARNCKQLQSLPELP--SCPEELDTSILESLSK   74 (324)
Q Consensus         1 ~~L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~~i~~---L~~L~l~~C~~L~~lP~lp--~sL~~L~~~~C~sL~~   74 (324)
                      |+|++|+|+.++ .+..+++|+.|+|++|.+ .+|..+..   |..|+++++ .+..++.+.  ++|+.|+++++ .+..
T Consensus        53 L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N-~i~~l~~~~~l~~L~~L~L~~N-~i~~  129 (198)
T d1m9la_          53 LALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN-QIASLSGIEKLVNLRVLYMSNN-KITN  129 (198)
T ss_dssp             EECSEEEESCCC-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEE-ECCCHHHHHHHHHSSEEEESEE-ECCC
T ss_pred             eECcccCCCCcc-cccCCccccChhhcccccccccccccccccccccccccc-cccccccccccccccccccccc-hhcc
Confidence            578889999997 599999999999999999 99875543   333889875 677776543  68999999885 3444


Q ss_pred             cCC---CCCcccccceeccCC
Q 020571           75 HFR---PTASRKLTYFMFTNC   92 (324)
Q Consensus        75 ~~~---~~~~~~~~~l~~~nC   92 (324)
                      ++.   -....++..|.+.++
T Consensus       130 ~~~~~~l~~l~~L~~L~L~~N  150 (198)
T d1m9la_         130 WGEIDKLAALDKLEDLLLAGN  150 (198)
T ss_dssp             HHHHHHHTTTTTCSEEEECSS
T ss_pred             ccccccccCCCccceeecCCC
Confidence            331   112234556666553

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.63  E-value=0.0011  Score=55.76  Aligned_cols=74  Identities=14%  Similarity=0.073  Sum_probs=53.2

Q ss_pred             ecCCCCCccchhhcCCCCCCEEEccCCCc-cCCc-ccccCCc---cccccccccCcCCCC----CCCCcEEecCCCCCCC
Q 020571            3 LVENKLESLPASIGCLSSLEFLHLTRNNL-SLPE-LPVLLSH---IEARNCKQLQSLPEL----PSCPEELDTSILESLS   73 (324)
Q Consensus         3 L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~-~i~~L~~---L~l~~C~~L~~lP~l----p~sL~~L~~~~C~sL~   73 (324)
                      .++.+|+++|.++.  +++++|+|++|++ .||. .+.++++   |+|+++..+..+|.-    ...++.+.+..|..+.
T Consensus        15 c~~~~l~~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~   92 (242)
T d1xwdc1          15 CQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL   92 (242)
T ss_dssp             EESCSCSSCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCC
T ss_pred             EeCCCCCCcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccc
Confidence            45567888987764  5889999999999 8886 4666665   888887776666532    2567777777777776


Q ss_pred             ccCCC
Q 020571           74 KHFRP   78 (324)
Q Consensus        74 ~~~~~   78 (324)
                      .++..
T Consensus        93 ~~~~~   97 (242)
T d1xwdc1          93 YINPE   97 (242)
T ss_dssp             EECTT
T ss_pred             ccccc
Confidence            66543

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.56  E-value=0.0032  Score=54.43  Aligned_cols=71  Identities=17%  Similarity=0.135  Sum_probs=41.6

Q ss_pred             ecCCCCCccchhhcCCCCCCEEEccCCCc-cCCc-ccccCCc---cccccccccCcCCCC----CCCCcEEecCCCCCCC
Q 020571            3 LVENKLESLPASIGCLSSLEFLHLTRNNL-SLPE-LPVLLSH---IEARNCKQLQSLPEL----PSCPEELDTSILESLS   73 (324)
Q Consensus         3 L~~~~l~~lP~~i~~l~~L~~L~L~~n~~-~lP~-~i~~L~~---L~l~~C~~L~~lP~l----p~sL~~L~~~~C~sL~   73 (324)
                      .++++|+.+|..|.  +++++|+|++|++ .||. ++.+++.   |+++++ ++..++..    ...++.+.......+.
T Consensus        18 c~~~~L~~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n-~l~~i~~~~~~~~~~~~~l~~~~~~~~~   94 (284)
T d1ozna_          18 CPQQGLQAVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDNAQLR   94 (284)
T ss_dssp             CCSSCCSSCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSCTTCC
T ss_pred             cCCCCCCccCCCCC--CCCCEEECcCCcCCCCCHHHhhccccccccccccc-cccccccccccccccccccccccccccc
Confidence            34556777777664  5677888888887 7775 4666655   666653 44444322    2345555555545555


Q ss_pred             ccC
Q 020571           74 KHF   76 (324)
Q Consensus        74 ~~~   76 (324)
                      .++
T Consensus        95 ~l~   97 (284)
T d1ozna_          95 SVD   97 (284)
T ss_dssp             CCC
T ss_pred             ccc
Confidence            553

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.46  E-value=0.0027  Score=54.86  Aligned_cols=70  Identities=21%  Similarity=0.227  Sum_probs=54.0

Q ss_pred             CeecCCCCCccch-hhcCCCCCCEEEccCCCc-cCCccc-ccCCc---cccccccccCcCCCC----CCCCcEEecCCCC
Q 020571            1 MNLVENKLESLPA-SIGCLSSLEFLHLTRNNL-SLPELP-VLLSH---IEARNCKQLQSLPEL----PSCPEELDTSILE   70 (324)
Q Consensus         1 ~~L~~~~l~~lP~-~i~~l~~L~~L~L~~n~~-~lP~~i-~~L~~---L~l~~C~~L~~lP~l----p~sL~~L~~~~C~   70 (324)
                      |+|++|+|+++|. .+..+++|++|++++|++ .++... ..+..   |.+.....++.++..    .++|+.|++.++.
T Consensus        37 L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~  116 (284)
T d1ozna_          37 IFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG  116 (284)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             EECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEecCCcc
Confidence            5899999999996 588999999999999999 776543 33443   556667778777643    2678999998864

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.44  E-value=0.002  Score=54.10  Aligned_cols=75  Identities=15%  Similarity=0.157  Sum_probs=57.5

Q ss_pred             CeecCCCCCccchh-hcCCCCCCEEEccCCCc-c-CCc-ccccCCc---cccccccccCcCCCC----CCCCcEEecCCC
Q 020571            1 MNLVENKLESLPAS-IGCLSSLEFLHLTRNNL-S-LPE-LPVLLSH---IEARNCKQLQSLPEL----PSCPEELDTSIL   69 (324)
Q Consensus         1 ~~L~~~~l~~lP~~-i~~l~~L~~L~L~~n~~-~-lP~-~i~~L~~---L~l~~C~~L~~lP~l----p~sL~~L~~~~C   69 (324)
                      |+|++|+|+.+|.. +..+++|++|+|++|.+ . +|. .+.++..   |.+..|.++..++.-    .++|+.|++.++
T Consensus        34 L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~  113 (242)
T d1xwdc1          34 LRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNT  113 (242)
T ss_dssp             EEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESC
T ss_pred             EECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccccchh
Confidence            58999999999874 68899999999999998 5 543 4666665   777777778776632    368999999886


Q ss_pred             CCCCccC
Q 020571           70 ESLSKHF   76 (324)
Q Consensus        70 ~sL~~~~   76 (324)
                       .+...+
T Consensus       114 -~l~~~~  119 (242)
T d1xwdc1         114 -GIKHLP  119 (242)
T ss_dssp             -CCCSCC
T ss_pred             -hhcccc
Confidence             455544

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.09  E-value=0.00073  Score=59.10  Aligned_cols=68  Identities=16%  Similarity=0.180  Sum_probs=37.5

Q ss_pred             eecCCCCC-ccchhhcCCCCCCEEEccCCC-c---cCCc---ccccCCccccccccccCc------CCCCCCCCcEEecC
Q 020571            2 NLVENKLE-SLPASIGCLSSLEFLHLTRNN-L---SLPE---LPVLLSHIEARNCKQLQS------LPELPSCPEELDTS   67 (324)
Q Consensus         2 ~L~~~~l~-~lP~~i~~l~~L~~L~L~~n~-~---~lP~---~i~~L~~L~l~~C~~L~~------lP~lp~sL~~L~~~   67 (324)
                      +|++|.+. ..+..++.+++|+.|+|++|. +   .+..   ...+|..|+|++|.++..      +...+++|+.|++.
T Consensus        77 ~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~  156 (284)
T d2astb2          77 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS  156 (284)
T ss_dssp             ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred             cccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhc
Confidence            56666665 456667778888888888763 2   1222   222333377777765421      12234555555555


Q ss_pred             CC
Q 020571           68 IL   69 (324)
Q Consensus        68 ~C   69 (324)
                      +|
T Consensus       157 ~~  158 (284)
T d2astb2         157 GY  158 (284)
T ss_dssp             SC
T ss_pred             cc
Confidence            54

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.77  E-value=0.0007  Score=59.23  Aligned_cols=13  Identities=15%  Similarity=-0.046  Sum_probs=6.7

Q ss_pred             CCcEEecCCCCCC
Q 020571           60 CPEELDTSILESL   72 (324)
Q Consensus        60 sL~~L~~~~C~sL   72 (324)
                      +|+.|++++|..+
T Consensus        96 ~L~~L~Ls~c~~i  108 (284)
T d2astb2          96 NLVRLNLSGCSGF  108 (284)
T ss_dssp             TCSEEECTTCBSC
T ss_pred             CCcCccccccccc
Confidence            4555555555444

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.70  E-value=0.0069  Score=48.20  Aligned_cols=53  Identities=25%  Similarity=0.181  Sum_probs=30.1

Q ss_pred             cCCCCCCEEEccCCCc-cCCc---ccccCCc---cccccccccCcCCCCC----CCCcEEecCCC
Q 020571           16 GCLSSLEFLHLTRNNL-SLPE---LPVLLSH---IEARNCKQLQSLPELP----SCPEELDTSIL   69 (324)
Q Consensus        16 ~~l~~L~~L~L~~n~~-~lP~---~i~~L~~---L~l~~C~~L~~lP~lp----~sL~~L~~~~C   69 (324)
                      ..++.|++|+|++|.+ .++.   .+..+++   |+|++ .++.+++++.    ..|+.|++.+.
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~-N~i~~l~~l~~l~~~~L~~L~L~~N  125 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSG-NELKSERELDKIKGLKLEELWLDGN  125 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTT-SCCCCGGGHHHHTTCCCSSCCCTTS
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCccccccccc-CccccchhhhhhhccccceeecCCC
Confidence            3467777777777776 6542   2333333   77766 4555555421    34566666663

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.04  E-value=0.0088  Score=47.55  Aligned_cols=32  Identities=19%  Similarity=0.166  Sum_probs=19.6

Q ss_pred             cccccccccCcCCCCC------CCCcEEecCCCCCCCccC
Q 020571           43 IEARNCKQLQSLPELP------SCPEELDTSILESLSKHF   76 (324)
Q Consensus        43 L~l~~C~~L~~lP~lp------~sL~~L~~~~C~sL~~~~   76 (324)
                      |+|++ .++..++.++      ++|+.|++++. .++.++
T Consensus        70 L~Ls~-N~i~~l~~~~~~~~~l~~L~~L~Ls~N-~i~~l~  107 (162)
T d1koha1          70 LNLSN-NRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSER  107 (162)
T ss_dssp             CCCCS-SCCCCCSGGGTHHHHSTTCCCCCCTTS-CCCCGG
T ss_pred             eeCCC-ccccCCchhHHHHhhCCcccccccccC-ccccch
Confidence            77876 4566665432      57777777773 455544

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.19  E-value=0.069  Score=47.53  Aligned_cols=29  Identities=10%  Similarity=0.162  Sum_probs=12.4

Q ss_pred             eecCCCCCc--cchhhcCCCCCCEEEccCCC
Q 020571            2 NLVENKLES--LPASIGCLSSLEFLHLTRNN   30 (324)
Q Consensus         2 ~L~~~~l~~--lP~~i~~l~~L~~L~L~~n~   30 (324)
                      |+++++|+.  +..-+..+++|+.|+|++|.
T Consensus         8 d~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~   38 (460)
T d1z7xw1           8 DIQCEELSDARWAELLPLLQQCQVVRLDDCG   38 (460)
T ss_dssp             EEESCCCCHHHHHHHHHHHTTCSEEEEESSC
T ss_pred             EeeCCcCChHHHHHHHHhCCCCCEEEeCCCC
Confidence            444444441  22223334444555555553

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.33  E-value=0.17  Score=44.88  Aligned_cols=68  Identities=21%  Similarity=0.238  Sum_probs=46.4

Q ss_pred             CeecCCCCC-----ccchhhcCCCCCCEEEccCCCc-c-----CCcccc----cCCccccccccccCc-----CCC---C
Q 020571            1 MNLVENKLE-----SLPASIGCLSSLEFLHLTRNNL-S-----LPELPV----LLSHIEARNCKQLQS-----LPE---L   57 (324)
Q Consensus         1 ~~L~~~~l~-----~lP~~i~~l~~L~~L~L~~n~~-~-----lP~~i~----~L~~L~l~~C~~L~~-----lP~---l   57 (324)
                      ++|++|.|+     .|...+...++|+.|+|++|++ .     |...+.    .|..|+|++|. +..     +++   -
T Consensus        32 L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-it~~~~~~l~~~l~~  110 (460)
T d1z7xw1          32 VRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC-LTGAGCGVLSSTLRT  110 (460)
T ss_dssp             EEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSC-CBGGGHHHHHHHTTS
T ss_pred             EEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCC-ccccccccccchhhc
Confidence            478899886     5677788999999999999986 3     222221    23338888875 332     221   2


Q ss_pred             CCCCcEEecCCC
Q 020571           58 PSCPEELDTSIL   69 (324)
Q Consensus        58 p~sL~~L~~~~C   69 (324)
                      .++|+.|++.++
T Consensus       111 ~~~L~~L~L~~N  122 (460)
T d1z7xw1         111 LPTLQELHLSDN  122 (460)
T ss_dssp             CTTCCEEECCSS
T ss_pred             cccccccccccc
Confidence            367899998875