Citrus Sinensis ID: 020587

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320----
Protein Sequence
MMSETALRDLNTLPSSDRKNESSSKGSFAKPFVGSANENVDVSLVSTHVNGNQTGNAGPGIANSEVEYIDSENLIDVEDIDTSVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSVYEKSHDSAPATVSDSPEMDSWENFCQSKLSPLSAQAVLRVTNIAREGLVIGS
Secondary Structure (PSIPRED)
cccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccHHcHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHcccccHHHHHHHHHHHcHHccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHcccccccccccHcccccccccccccccccccccccccccccccccccccccccccEEEccHHHccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccHHHHHHcHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHcccHccHHHHEEHHHHHccccEEcc
Coil and Loop (DISEMBL)
mmsetalrdlntlpssdrknessskgsfakpfvgsanenVDVSLVSTHvngnqtgnagpgianseveyidsenlidvediDTSVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVspilllpklqpylknrnprirakasmcfsrsvprlgvegikeYGIDKLIQVAASQLSDQLPESREAARTLLLELQSVYekshdsapatvsdspemdswenfcqsklsplsaQAVLRVTNIAREGLVIGS
Flexible Loop (DISEMBL)
mmsetalrdlntlpssdrknessskgsfakpfvgsANENVDVSLVSTHVngnqtgnagpgiaNSEVEYIDSENLIDVEDIDTSVKTLVagldskdwvVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPILLLPKLQPYLKNRNPRirakasmcfsrsvpRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSVYEKSHDSAPATVSDSPEMDSWENFCQSKLSPLSAQAVLRVTNIAREGLVIGS
Low Complexity Region (SEG)
MMSETALRDLNTLPSSDRKNESSSKGSFAKPFVGSANENVDVSLVSTHVNGNQTGNAGPGIANSEVEYIDSENLIDVEDIDTSVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDlldpllvqlllkssqdkRFVCEAAEKALVAMTTWVSPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSVYEKSHDSAPATVSDSPEMDSWENFCQSKLSPLSAQAVLRVTNIAREGLVIGS
Disordered region (IsUnstruct)
************************************************************IANSEVEYIDSENLIDVEDIDTSVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAA***********************************************FC******LSAQAVLRVTNIAREGLV***
Disordered Region (DISOPRED)
********************************************************************IDSENLIDVEDIDTSVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSVYE**************************************************
Disordered Region (DISEMBL)
MMSETALRDLNTL**************FAKPFVGSANENVDVSLVSTHVNGNQTGNAGPGIANSEVEYIDSENLIDVEDIDTSVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSVY*****************DSWENFCQSKLSPLSAQAVLRVTNIAREGLVIGS
Disordered Region (DISPRO)
**************************************************************NSEVEYIDSENLIDVEDIDTSVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSVYEKSHDS******DSPEMDSWENFCQSKLSPLSAQAVLRVTNIAREGLVI**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MMSETALRDLNTLPSSDRKNESSSKGSFAKPFVGSANENVDVSLVSTHVNGNQTGNAGPGIANSEVEYIDSENLIDVEDIDTSVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSVYEKSHDSAPATVSDSPEMDSWENFCQSKLSPLSAQAVLRVTNIAREGLVIGS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	324	2.2.26 [Sep-21-2011]
Q6A070	1759	Protein FAM179B OS=Mus mu	yes	no	0.608	0.111	0.267	7e-10
Q9Y4F4	1720	Protein FAM179B OS=Homo s	yes	no	0.330	0.062	0.345	6e-09
Q3TYG6	1002	Protein FAM179A OS=Mus mu	no	no	0.447	0.144	0.308	3e-08
Q6ZUX3	1019	Protein FAM179A OS=Homo s	no	no	0.441	0.140	0.304	3e-07

>sp|Q6A070|F179B_MOUSE Protein FAM179B OS=Mus musculus GN=Fam179b PE=3 SV=2

 Score = 65.1 bits (157), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 56/209 (26%), Positives = 89/209 (42%), Gaps = 12/209 (5%)

Query: 67   EYIDSENLIDVEDIDTSVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIP 126
            E +DS  L      D ++   +  L  +DW    E LN VR L+ FH + +   L +   
Sbjct: 1245 EIMDSLELRPFSKPDIALTEALRLLADEDWEKKMEGLNFVRCLAAFHSDLLNTKLHETTF 1304

Query: 127  LVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLLKSSQDKRFVCEAAEK 186
             VV+ +KN RS V + A++   D+F+     M   LD  +  LL K+ +   F+ E  +K
Sbjct: 1305 AVVQEVKNLRSGVSRAAVVCLGDLFTYLKKSMDQELDSAVRALLHKAGESNTFIREDVDK 1364

Query: 187  ALVAMTTWVSPILLLPKLQPYLKNRNPRIRAKASMCFSRSV--------PRLGVEGIKEY 238
            AL AM   V+P   +  L   +      +      C ++ +        P     G K+ 
Sbjct: 1365 ALKAMVNNVTPARAVTSL---INGGQSHLHIAVRRCTAQHLADVVECMDPERISSGTKDM 1421

Query: 239  GIDKLIQVAASQLSDQLPESREAARTLLL 267
              D+L+  AA    D   E+R   R +L 
Sbjct: 1422 A-DRLLPAAAKFAQDSSQETRYYGRKMLF 1449

Mus musculus (taxid: 10090)

>sp|Q9Y4F4|F179B_HUMAN Protein FAM179B OS=Homo sapiens GN=FAM179B PE=1 SV=4

 Score = 62.0 bits (149), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 37/107 (34%), Positives = 56/107 (52%)

Query: 91   LDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADI 150
            L  +DW    E LN +R L+ FH E +   L +    VV+ +KN RS V + A++  +D+
Sbjct: 1266 LADEDWEKKIEGLNFIRCLAAFHSEILNTKLHETNFAVVQEVKNLRSGVSRAAVVCLSDL 1325

Query: 151  FSAYNDRMIDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSP 197
            F+     M   LD  +  LL K+ +   F+ E  +KAL AM   V+P
Sbjct: 1326 FTYLKKSMDQELDTTVKVLLHKAGESNTFIREDVDKALRAMVNNVTP 1372

Homo sapiens (taxid: 9606)

>sp|Q3TYG6|F179A_MOUSE Protein FAM179A OS=Mus musculus GN=Fam179a PE=2 SV=1

 Score = 59.7 bits (143), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 69/146 (47%), Gaps = 1/146 (0%)

Query: 91  LDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADI 150
           L+S DW +  + L N++RL+  H E +   L DV   V   + N RS V + AI T  D+
Sbjct: 500 LNSNDWQMKEKGLVNIQRLAACHSEVLGTRLHDVSLAVTAEVTNLRSKVSRLAISTLGDL 559

Query: 151 FSAYNDRMIDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPILLLPKLQPY-LK 209
           F      M    + ++  LL K      F+  AA +AL AM   V+P   L  L    + 
Sbjct: 560 FRVLKKNMDQEAEEIVRCLLQKMGNTSEFIQRAANRALGAMVENVTPARALVALTSAGVY 619

Query: 210 NRNPRIRAKASMCFSRSVPRLGVEGI 235
           +RNP +R   +   S  + ++G E +
Sbjct: 620 HRNPLVRKCTAKHLSAVLEQIGAEKL 645

Mus musculus (taxid: 10090)

>sp|Q6ZUX3|F179A_HUMAN Protein FAM179A OS=Homo sapiens GN=FAM179A PE=2 SV=2

 Score = 56.2 bits (134), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 71/148 (47%), Gaps = 5/148 (3%)

Query: 91  LDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADI 150
           L+S DW +  + L +++RL+  H E +   L DV  +V   + N RS V   AI T  D+
Sbjct: 499 LNSSDWQMKEKGLVSIQRLAACHSEVLTGKLHDVCLVVTGEVTNLRSKVSHLAISTLGDL 558

Query: 151 FSAYNDRMIDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAM---TTWVSPILLLPKLQPY 207
           F A    M    + +   LL K +    F+  AA ++L AM    T    +++L     Y
Sbjct: 559 FQALKKNMDQEAEEIARCLLQKMADTNEFIQRAAGQSLRAMVENVTLARSLVVLTSAGVY 618

Query: 208 LKNRNPRIRAKASMCFSRSVPRLGVEGI 235
             +RNP IR  A+   S  + ++G E +
Sbjct: 619 --HRNPLIRKYAAEHLSAVLEQIGAEKL 644

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	324
225452496	330	PREDICTED: uncharacterized protein LOC10	0.996	0.978	0.772	1e-136
255552614	329	clasp, putative [Ricinus communis] gi|22	0.993	0.978	0.757	1e-135
356551753	345	PREDICTED: uncharacterized protein LOC10	0.987	0.927	0.732	1e-129
449446646	327	PREDICTED: uncharacterized protein LOC10	0.990	0.981	0.705	1e-129
356501051	342	PREDICTED: uncharacterized protein LOC10	0.987	0.935	0.741	1e-128
358347141	379	hypothetical protein MTR_092s0010 [Medic	0.987	0.844	0.634	1e-116
48716880	346	unknown protein [Oryza sativa Japonica G	0.972	0.910	0.607	1e-113
125562332	346	hypothetical protein OsI_30032 [Oryza sa	0.972	0.910	0.604	1e-113
115477511	346	Os08g0534900 [Oryza sativa Japonica Grou	0.972	0.910	0.604	1e-112
297807497	349	binding protein [Arabidopsis lyrata subs	0.953	0.885	0.637	1e-107

>gi|225452496|ref|XP_002279099.1| PREDICTED: uncharacterized protein LOC100247524 [Vitis vinifera] gi|296087686|emb|CBI34942.3| unnamed protein product [Vitis vinifera]

 Score =  491 bits (1265), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 255/330 (77%), Positives = 289/330 (87%), Gaps = 7/330 (2%)

Query: 2   MSETALRDLNTLPSSDRKNESSSKGSFAKPFVGSANENVD-------VSLVSTHVNGNQT 54
           MS  ALRDLN LP  +RKNE+SSKGS  KP V ++NEN +        SLVST  NG++T
Sbjct: 1   MSGKALRDLNMLPGLERKNENSSKGSLTKPCVENSNENSEEWKRKNSSSLVSTPNNGDET 60

Query: 55  GNAGPGIANSEVEYIDSENLIDVEDIDTSVKTLVAGLDSKDWVVVCEALNNVRRLSIFHK 114
                 IAN+EVEYI+SENL D++D+D S+KTL+ GLDSKDWV+VCEALNNVRRLSIFHK
Sbjct: 61  IKPEVEIANTEVEYIESENLNDLDDVDMSLKTLLDGLDSKDWVLVCEALNNVRRLSIFHK 120

Query: 115 EAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLLKSS 174
           EAML++L +VIPL+VKSLKNPRSAVCKTAIMT+ADIFSAY+D +ID LDPLLVQLLLKSS
Sbjct: 121 EAMLNMLENVIPLIVKSLKNPRSAVCKTAIMTSADIFSAYSDHIIDSLDPLLVQLLLKSS 180

Query: 175 QDKRFVCEAAEKALVAMTTWVSPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEG 234
           QDKRFVCEAAE+AL+AMTTW+SPI LLPKLQPYLKN+NPRIRAKASMCF RSVPRLGVEG
Sbjct: 181 QDKRFVCEAAERALIAMTTWISPITLLPKLQPYLKNKNPRIRAKASMCFCRSVPRLGVEG 240

Query: 235 IKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSVYEKSHDSAPATVSDSPEMDSWE 294
           +K YGIDKLIQ+AA+QLSDQLPESREAARTLLLELQ+VYEKSH+ AP TVS+  EM SWE
Sbjct: 241 VKAYGIDKLIQIAAAQLSDQLPESREAARTLLLELQNVYEKSHEHAPNTVSEQQEMGSWE 300

Query: 295 NFCQSKLSPLSAQAVLRVTNIAREGLVIGS 324
           +FCQSKLSPLSAQAVLRVTNIARE LV+GS
Sbjct: 301 HFCQSKLSPLSAQAVLRVTNIAREDLVLGS 330

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255552614|ref|XP_002517350.1| clasp, putative [Ricinus communis] gi|223543361|gb|EEF44892.1| clasp, putative [Ricinus communis]

 Score =  486 bits (1250), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 250/330 (75%), Positives = 285/330 (86%), Gaps = 8/330 (2%)

Query: 2   MSETALRDLNTLPSSDRKNESSSKGSFAKPFVGSANENVD-------VSLVSTHVNGNQT 54
           MSE ALRDLN LP S+RK+ESS K +F KP+ G+ +EN +        SLVS+  NG + 
Sbjct: 1   MSENALRDLNMLPGSERKSESSGKANFTKPYSGNIDENAEKCQRNNSASLVSSTANGVEA 60

Query: 55  GNAGPGIANSEVEYIDSENLIDVEDIDTSVKTLVAGLDSKDWVVVCEALNNVRRLSIFHK 114
            N+G  I N+EVEYI+SE+L DVED+D  VKTL+AGLDSKDWV+VCE+LNNVRRLSIFHK
Sbjct: 61  VNSGVEIGNAEVEYIESEDLSDVEDVDICVKTLLAGLDSKDWVMVCESLNNVRRLSIFHK 120

Query: 115 EAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLLKSS 174
           EA+ D+L DV+PL+VKSLKNPRSAV KTAIMT+ADIF+AYND++I+ LDPLLVQLLLKSS
Sbjct: 121 EALQDMLADVLPLIVKSLKNPRSAVIKTAIMTSADIFNAYNDQIIETLDPLLVQLLLKSS 180

Query: 175 QDKRFVCEAAEKALVAMTTWVSPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEG 234
           QDKRFVCEAAE+AL+AMT WVSP LLLPKLQPY KNRN RIRAKASMCF+RSVPRLGVEG
Sbjct: 181 QDKRFVCEAAERALIAMTNWVSPSLLLPKLQPYFKNRNSRIRAKASMCFARSVPRLGVEG 240

Query: 235 IKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSVYEKSHDSAPATVSDSPEMDSWE 294
           IK YGIDKLIQVAASQLSDQLPESREAAR LLLELQ VYEKSHD  P T+S+  E+ SWE
Sbjct: 241 IKSYGIDKLIQVAASQLSDQLPESREAARNLLLELQIVYEKSHDLTP-TISEHSELSSWE 299

Query: 295 NFCQSKLSPLSAQAVLRVTNIAREGLVIGS 324
           +FCQSKLSPLSAQAVLRVTN+AREGLV+GS
Sbjct: 300 HFCQSKLSPLSAQAVLRVTNVAREGLVLGS 329

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356551753|ref|XP_003544238.1| PREDICTED: uncharacterized protein LOC100779608 [Glycine max]

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 252/344 (73%), Positives = 285/344 (82%), Gaps = 24/344 (6%)

Query: 2   MSETALRDLNTLPSSDRKNESSSKGSFAKPFVGSANENVD--------VSLVSTHVNGNQ 53
           MSE ALRDLNT+  ++RKNE SSK   +KP V +A+EN++         SLVS  VNGNQ
Sbjct: 1   MSEKALRDLNTILGTERKNEDSSKACLSKPSVDNADENIEEWQKKKNSSSLVSPAVNGNQ 60

Query: 54  --TGNAGPGIANSEVEYIDSENLIDVEDIDTSVKTLVAGLDSKDWVVVCEALNNVRRLSI 111
             T N+   + N+EVEYI+SENL DV+D DT +KTL+AGLDSKDWV+VC+ LNNVRRLSI
Sbjct: 61  AVTANSSAEVVNAEVEYIESENLNDVDDADTCLKTLLAGLDSKDWVLVCDTLNNVRRLSI 120

Query: 112 FHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLL 171
           FHKEAMLD+LGDVI  + KSLK+PRSAVCKTAIMT+ADIFSAYNDR++D LDPLLVQLLL
Sbjct: 121 FHKEAMLDVLGDVITSIAKSLKSPRSAVCKTAIMTSADIFSAYNDRILDSLDPLLVQLLL 180

Query: 172 KSSQDKRFVCEAAEKALVAMTTWVSPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLG 231
           K+SQDKRFVCEAAEKAL+AMTTW+SPI LLPKLQP LKN+NPRIRAKASMCFSRSV RLG
Sbjct: 181 KASQDKRFVCEAAEKALIAMTTWISPISLLPKLQPCLKNKNPRIRAKASMCFSRSVSRLG 240

Query: 232 VEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSVYEK-SHDSAPAT------- 283
            EGIK YGIDKLIQVAASQLSDQLPESREAARTLLLELQ+VYEK SHD  PAT       
Sbjct: 241 EEGIKTYGIDKLIQVAASQLSDQLPESREAARTLLLELQNVYEKSSHDLMPATPVNSDHN 300

Query: 284 ------VSDSPEMDSWENFCQSKLSPLSAQAVLRVTNIAREGLV 321
                 V++  E+ SWE+FCQSKLSPLSAQAVLRVT+IAREGLV
Sbjct: 301 NVNGDSVNEDSEVRSWESFCQSKLSPLSAQAVLRVTSIAREGLV 344

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449446646|ref|XP_004141082.1| PREDICTED: uncharacterized protein LOC101211897 [Cucumis sativus] gi|449489451|ref|XP_004158315.1| PREDICTED: uncharacterized LOC101211897 [Cucumis sativus]

 Score =  466 bits (1200), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 232/329 (70%), Positives = 275/329 (83%), Gaps = 8/329 (2%)

Query: 2   MSETALRDLNTLPSSDRKNESSSKGSFAKPFVGSANENVD------VSLVSTHVNGNQTG 55
           MSE AL+ L+T+P  +  NESS KG  +K  +G+AN NV+       + +   VNG +  
Sbjct: 1   MSEKALKPLSTVPGLEGSNESSCKGDLSKQGIGTANGNVEELKNKGCASIRPQVNG-ENS 59

Query: 56  NAGPGIANSEVEYIDSENLIDVEDIDTSVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKE 115
           N+G  + +SEVEYI+SENL D+ED+ +S+KTL+AGL+SKDWV+VC ALNN RRL+I+H+E
Sbjct: 60  NSGAEVGSSEVEYIESENLTDLEDVSSSLKTLLAGLESKDWVLVCGALNNTRRLAIYHRE 119

Query: 116 AMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLLKSSQ 175
            MLD+LGDVI L+VKS+KNPRSAVCKTA+MT+ADIFSAYND+MI+ LDP+LVQLLLKSSQ
Sbjct: 120 DMLDMLGDVISLLVKSMKNPRSAVCKTALMTSADIFSAYNDKMIESLDPMLVQLLLKSSQ 179

Query: 176 DKRFVCEAAEKALVAMTTWVSPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGI 235
           DKRFVCEAAEKALVAMT+  SP LLLPKL+PYLKNRNPRIRAKASMCF RSVPRLGVEGI
Sbjct: 180 DKRFVCEAAEKALVAMTSSFSPELLLPKLEPYLKNRNPRIRAKASMCFCRSVPRLGVEGI 239

Query: 236 KEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSVYEKSHDSAPATVSDSPEMDSWEN 295
           + YGIDKLIQ AASQLSDQLPESREAAR LLLELQSVYEK   + P T+ + PE  SWE+
Sbjct: 240 RAYGIDKLIQTAASQLSDQLPESREAARILLLELQSVYEK-FPNLPTTMPEDPEKGSWED 298

Query: 296 FCQSKLSPLSAQAVLRVTNIAREGLVIGS 324
           FCQSKLSPLSAQAVLRVTN++REG+V  S
Sbjct: 299 FCQSKLSPLSAQAVLRVTNVSREGIVSSS 327

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356501051|ref|XP_003519342.1| PREDICTED: uncharacterized protein LOC100799668 [Glycine max]

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 253/341 (74%), Positives = 285/341 (83%), Gaps = 21/341 (6%)

Query: 2   MSETALRDLNTLPSSDRKNESSSKGSFAKPFVGSANENVDV--------SLVSTHVNGNQ 53
           MSE ALRDLNT+  ++RKNE SSK   +KP V +A EN++         SLVS  VNGN 
Sbjct: 1   MSEKALRDLNTILGTERKNEDSSKACLSKPSVDNAVENIEEWQKKNNSPSLVSPAVNGNL 60

Query: 54  --TGNAGPGIANSEVEYIDSENLIDVEDIDTSVKTLVAGLDSKDWVVVCEALNNVRRLSI 111
             T N+G  + N EVEYI+SENL DV+DIDT +KTL+AGLDSKDWV+VC+ LNNVRRLSI
Sbjct: 61  AVTANSGAEVVNPEVEYIESENLNDVDDIDTCLKTLLAGLDSKDWVLVCDTLNNVRRLSI 120

Query: 112 FHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLL 171
           FHKEAMLD+LGDVI  + KSLK+PRSAVCKTAIMT+ADIFSAYND +ID LDPLLVQLLL
Sbjct: 121 FHKEAMLDMLGDVITSIAKSLKSPRSAVCKTAIMTSADIFSAYNDLIIDSLDPLLVQLLL 180

Query: 172 KSSQDKRFVCEAAEKALVAMTTWVSPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLG 231
           KSSQDKRFVCEAAEKAL++MT W+SPI LLPKLQPYLKN+NPRIRAKASMCFSRSVP+LG
Sbjct: 181 KSSQDKRFVCEAAEKALISMTIWISPISLLPKLQPYLKNKNPRIRAKASMCFSRSVPQLG 240

Query: 232 VEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSVYEKSHD-SAPATVS----- 285
            EGIK YGIDKLIQVAASQLSDQLPESREAARTLLLELQ+VYEKSHD   PAT +     
Sbjct: 241 AEGIKTYGIDKLIQVAASQLSDQLPESREAARTLLLELQNVYEKSHDLIKPATPTVNNEH 300

Query: 286 ----DSPEMDSWENFCQSKLSPLSAQAVLRV-TNIAREGLV 321
               ++PE+ SWE+FCQSKLSPLSAQAVLRV T+IAREGLV
Sbjct: 301 TVNEENPEVSSWESFCQSKLSPLSAQAVLRVTTSIAREGLV 341

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358347141|ref|XP_003637620.1| hypothetical protein MTR_092s0010 [Medicago truncatula] gi|355503555|gb|AES84758.1| hypothetical protein MTR_092s0010 [Medicago truncatula]

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 240/378 (63%), Positives = 276/378 (73%), Gaps = 58/378 (15%)

Query: 2   MSETALRDLNTLPSSDRKNESSSKGSFAKPFVGSANENVD--------VSLVSTHVNGNQ 53
           MSETAL+DLN +P+++RK+E S K    KP V +AN N +         SLVS HVNGNQ
Sbjct: 1   MSETALKDLNNIPATERKSEGSGKACLTKPPVDNANGNTEESQKKKNCSSLVSPHVNGNQ 60

Query: 54  T--GNAGPGIANSEVEYIDSENLIDVEDIDTSVKTLVAGLDSKDWVVVCEALNNVRRLSI 111
               ++   +   EVEYIDSENL D+ED+D  VKTL+AGLDSKDWV+VC+ LNNVRRLSI
Sbjct: 61  AVPADSVVEVGTVEVEYIDSENLNDLEDVDACVKTLLAGLDSKDWVLVCDTLNNVRRLSI 120

Query: 112 FHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLL 171
           FHKEAMLDILGDVI  + K+LK+PRSAV KTAIMT+ADIF AYND +ID LDPLL+QLLL
Sbjct: 121 FHKEAMLDILGDVITRIAKALKSPRSAVIKTAIMTSADIFGAYNDLIIDSLDPLLLQLLL 180

Query: 172 KSSQDKRFVCEAAEKALVAMTTWVSPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLG 231
           KSSQDKRFVCEAAEKAL++MTT +SPI LLPKLQPYLK+++PR+RAKASMCFSRSVP+LG
Sbjct: 181 KSSQDKRFVCEAAEKALISMTTCISPISLLPKLQPYLKHKHPRVRAKASMCFSRSVPQLG 240

Query: 232 VEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSVYEK---------------- 275
            EGI  YGIDKLIQVAASQLSDQLPESREAARTLLLELQ+VYEK                
Sbjct: 241 AEGINTYGIDKLIQVAASQLSDQLPESREAARTLLLELQNVYEKFPNLVPAATVSEDPKT 300

Query: 276 ------------SHDSAPATVSDSPE--------------------MDSWENFCQSKLSP 303
                       S D+   TVS+ PE                     +SWE+FCQS LSP
Sbjct: 301 ETVSEDSKTETVSEDAKTVTVSEDPETVTVSEDPETETVSEEPEIATESWESFCQSNLSP 360

Query: 304 LSAQAVLRVTNIAREGLV 321
           LSAQAVLRVT+IAREGLV
Sbjct: 361 LSAQAVLRVTSIAREGLV 378

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|48716880|dbj|BAD23576.1| unknown protein [Oryza sativa Japonica Group] gi|215708755|dbj|BAG94024.1| unnamed protein product [Oryza sativa Japonica Group]

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 206/339 (60%), Positives = 256/339 (75%), Gaps = 24/339 (7%)

Query: 2   MSETALRDLNTLPSSD--RKNESSSKGSFAKPFVG-----SANENVDVSLVSTHVNGNQT 54
           MS++AL+DLN   S++  +  +SS+K    KP +      +  EN    L     NG + 
Sbjct: 1   MSDSALKDLNLAQSAELEKTKDSSAKSCITKPVLNGNKCNNTEENAPPVLPDAVTNGCEA 60

Query: 55  GNAGPGIANSEVEYIDSENLIDVEDIDTSVKTLVAGLDSKDWVVVCEALNNVRRLSIFHK 114
           GNA       +VEYIDSE+L D+ED   ++ TLVA LDSKDWV+ CEALNNVR+L+IFHK
Sbjct: 61  GNA-------DVEYIDSESLTDLEDAGATLSTLVARLDSKDWVMTCEALNNVRQLAIFHK 113

Query: 115 EAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLLKSS 174
           + + ++L  ++PL+VKS+KNPRSAVCKTA+MT ADIF AY D M+D +DPLLVQL LKSS
Sbjct: 114 DRLQELLEPLVPLIVKSVKNPRSAVCKTALMTCADIFKAYGDLMVDSIDPLLVQLFLKSS 173

Query: 175 QDKRFVCEAAEKALVAMTTWVSPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEG 234
           QDKRFVCEAAE AL++MT+W++P  LLPK+QPYLKNRNPRIRAKASMCFS+SVPRLGVEG
Sbjct: 174 QDKRFVCEAAEAALISMTSWIAPSALLPKMQPYLKNRNPRIRAKASMCFSKSVPRLGVEG 233

Query: 235 IKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSVYEKSHDSAPATVSDSPEM---- 290
           IKEYG+DKL+Q+AA+QLSDQLPESREAAR L LELQ+ YEKS  S+   V D+P      
Sbjct: 234 IKEYGMDKLVQIAATQLSDQLPESREAARKLALELQAFYEKSQASSSGEVDDAPATSPDA 293

Query: 291 ------DSWENFCQSKLSPLSAQAVLRVTNIAREGLVIG 323
                 +SWE FCQSKLSPLSAQA+LRVT+  +EG+ +G
Sbjct: 294 DADAGAESWEAFCQSKLSPLSAQAILRVTSTTKEGVAVG 332

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125562332|gb|EAZ07780.1| hypothetical protein OsI_30032 [Oryza sativa Indica Group]

 Score =  412 bits (1060), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 205/339 (60%), Positives = 256/339 (75%), Gaps = 24/339 (7%)

Query: 2   MSETALRDLNTLPSSD--RKNESSSKGSFAKPFVG-----SANENVDVSLVSTHVNGNQT 54
           MS++AL+DLN   S++  +  +SS+K    KP +      +  EN    L     NG + 
Sbjct: 1   MSDSALKDLNLAQSAELEKTKDSSAKSCITKPVLNGNKCNNTEENAPPVLPDAVTNGCEA 60

Query: 55  GNAGPGIANSEVEYIDSENLIDVEDIDTSVKTLVAGLDSKDWVVVCEALNNVRRLSIFHK 114
           GNA       +VEYIDSE+L ++ED   ++ TLVA LDSKDWV+ CEALNNVR+L+IFHK
Sbjct: 61  GNA-------DVEYIDSESLTELEDAGATLSTLVARLDSKDWVMTCEALNNVRQLAIFHK 113

Query: 115 EAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLLKSS 174
           + + ++L  ++PL+VKS+KNPRSAVCKTA+MT ADIF AY D M+D +DPLLVQL LKSS
Sbjct: 114 DRLQELLEPLVPLIVKSVKNPRSAVCKTALMTCADIFKAYGDLMVDSIDPLLVQLFLKSS 173

Query: 175 QDKRFVCEAAEKALVAMTTWVSPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEG 234
           QDKRFVCEAAE AL++MT+W++P  LLPK+QPYLKNRNPRIRAKASMCFS+SVPRLGVEG
Sbjct: 174 QDKRFVCEAAEAALISMTSWIAPSALLPKMQPYLKNRNPRIRAKASMCFSKSVPRLGVEG 233

Query: 235 IKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSVYEKSHDSAPATVSDSPEM---- 290
           IKEYG+DKL+Q+AA+QLSDQLPESREAAR L LELQ+ YEKS  S+   V D+P      
Sbjct: 234 IKEYGMDKLVQIAATQLSDQLPESREAARKLALELQAFYEKSQASSSGEVDDAPATSPDA 293

Query: 291 ------DSWENFCQSKLSPLSAQAVLRVTNIAREGLVIG 323
                 +SWE FCQSKLSPLSAQA+LRVT+  +EG+ +G
Sbjct: 294 DADAGAESWEAFCQSKLSPLSAQAILRVTSTTKEGVAVG 332

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115477511|ref|NP_001062351.1| Os08g0534900 [Oryza sativa Japonica Group] gi|45735800|dbj|BAD13163.1| unknown protein [Oryza sativa Japonica Group] gi|45736072|dbj|BAD13097.1| unknown protein [Oryza sativa Japonica Group] gi|113624320|dbj|BAF24265.1| Os08g0534900 [Oryza sativa Japonica Group] gi|125581790|gb|EAZ22721.1| hypothetical protein OsJ_06393 [Oryza sativa Japonica Group] gi|215692686|dbj|BAG88106.1| unnamed protein product [Oryza sativa Japonica Group] gi|215766622|dbj|BAG98684.1| unnamed protein product [Oryza sativa Japonica Group]

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 205/339 (60%), Positives = 255/339 (75%), Gaps = 24/339 (7%)

Query: 2   MSETALRDLNTLPSSD--RKNESSSKGSFAKPFVG-----SANENVDVSLVSTHVNGNQT 54
           MS++AL+DLN   S++  +  +SS+K    KP +      +  EN    L     NG + 
Sbjct: 1   MSDSALKDLNLAQSAELEKTKDSSAKSCITKPVLNGNKCNNTEENAPPVLPDAVTNGCEA 60

Query: 55  GNAGPGIANSEVEYIDSENLIDVEDIDTSVKTLVAGLDSKDWVVVCEALNNVRRLSIFHK 114
           GNA       +VEYIDSE+L D+ED   ++ TLVA LDSKDWV+ CEALNNVR+L+IFHK
Sbjct: 61  GNA-------DVEYIDSESLTDLEDAGATLSTLVARLDSKDWVMTCEALNNVRQLAIFHK 113

Query: 115 EAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLLKSS 174
           + + ++L  ++PL+VKS+KNPRSAVCKTA+MT ADIF AY D M+D +DPLLVQL LKSS
Sbjct: 114 DRLQELLEPLVPLIVKSVKNPRSAVCKTALMTCADIFKAYGDLMVDSIDPLLVQLFLKSS 173

Query: 175 QDKRFVCEAAEKALVAMTTWVSPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEG 234
           QDKRFVCEAAE AL++MT+W++P  LLPK+QPYLKNRNPRIRAKASMCFS+SVP LGVEG
Sbjct: 174 QDKRFVCEAAEAALISMTSWIAPSALLPKMQPYLKNRNPRIRAKASMCFSKSVPSLGVEG 233

Query: 235 IKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSVYEKSHDSAPATVSDSPEM---- 290
           IKEYG+DKL+Q+AA+QLSDQLPESREAAR L LELQ+ YEKS  S+   V D+P      
Sbjct: 234 IKEYGMDKLVQIAATQLSDQLPESREAARKLALELQAFYEKSQASSSGEVDDAPATSPDA 293

Query: 291 ------DSWENFCQSKLSPLSAQAVLRVTNIAREGLVIG 323
                 +SWE FCQSKLSPLSAQA+LRVT+  +EG+ +G
Sbjct: 294 DADAGAESWEAFCQSKLSPLSAQAILRVTSTTKEGVAVG 332

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297807497|ref|XP_002871632.1| binding protein [Arabidopsis lyrata subsp. lyrata] gi|297317469|gb|EFH47891.1| binding protein [Arabidopsis lyrata subsp. lyrata]

 Score =  393 bits (1010), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 223/350 (63%), Positives = 256/350 (73%), Gaps = 41/350 (11%)

Query: 2   MSETALRDLNTLPSSDRKNESSSKGSFAKPFVGSANENVD-------VSLVSTHVNGNQT 54
           M+   L+D+N+L  +++   S  K S  KP VG  N   +        SL S+     + 
Sbjct: 1   MASNTLKDMNSLHVTEKI--SDCKASLTKPCVGKMNGKSEDRPLPNSASLDSSDPKVAEA 58

Query: 55  GNAGPGIANSEVEYIDSENLIDVEDIDTSVKTLVAGLDSKDWVVVCEALNNVRRLSIFHK 114
               P  A  EVEYIDSENL +V+D DT +K+++AGL+SKDW+ VC+ALNNVRRLSIFHK
Sbjct: 59  EKPEPEKAIVEVEYIDSENLDNVDDADTVLKSVLAGLESKDWISVCDALNNVRRLSIFHK 118

Query: 115 EAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLLKSS 174
           EAML +L  VIPLVVKSLKNPRSAVCKTA MT+ADIFSAYN+ + DLL+PLL QLLLKSS
Sbjct: 119 EAMLHMLEKVIPLVVKSLKNPRSAVCKTACMTSADIFSAYNNHITDLLEPLLTQLLLKSS 178

Query: 175 QDKRFVCEAAEKALVAMTTWVSPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEG 234
           QDKRFVCEAAEKAL AMT +VSP LLLPKLQP LKNRNPRIRAKAS+CFSRSVPRLGVEG
Sbjct: 179 QDKRFVCEAAEKALTAMTKYVSPTLLLPKLQPCLKNRNPRIRAKASLCFSRSVPRLGVEG 238

Query: 235 IKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSVYEKSH----------------- 277
           IKEYGIDKL+Q AASQLSDQLPESREAART+LLELQ+VYEK+H                 
Sbjct: 239 IKEYGIDKLVQAAASQLSDQLPESREAARTVLLELQTVYEKAHPLINPETSSSSSPEEEQ 298

Query: 278 --DSAPATVSDSPEMDSWENFCQSKLSPLSAQAVLRVTNI----AREGLV 321
             ++ P T         WE FCQSKLS LSAQAVLRVTN+    AREGLV
Sbjct: 299 IAEAGPVT---------WEIFCQSKLSALSAQAVLRVTNVVTVNAREGLV 339

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	324
TAIR|locus:2185505	346	AT5G14790 "AT5G14790" [Arabido	0.981	0.919	0.612	2.1e-93
TAIR|locus:2096667	326	AT3G01450 "AT3G01450" [Arabido	0.987	0.981	0.577	8.6e-88
TAIR|locus:2130814	296	AT4G15830 [Arabidopsis thalian	0.765	0.837	0.412	3.7e-48
TAIR|locus:2086919	361	AT3G18530 [Arabidopsis thalian	0.814	0.731	0.429	7.3e-43
MGI|MGI:2443498	1002	Fam179a "family with sequence	0.441	0.142	0.291	1.1e-05
FB|FBgn0259818	1655	CG42399 [Drosophila melanogast	0.552	0.108	0.256	9.1e-05

TAIR|locus:2185505 AT5G14790 "AT5G14790" [Arabidopsis thaliana (taxid:3702)]

 Score = 930 (332.4 bits), Expect = 2.1e-93, P = 2.1e-93
 Identities = 207/338 (61%), Positives = 245/338 (72%)

Query:     2 MSETALRDLNTLPSSDRKNESSSKGSFAKPFVGSAN-ENVD------VSLVSTHVNGNQT 54
             M+   L+++N+L  +++   S  K S  KP VG  N ++ D       SL S+     + 
Sbjct:     1 MASNTLKEMNSLHVTEKI--SDCKASLTKPCVGKMNGKSEDRPLPNSASLDSSDSKVVEA 58

Query:    55 GNAGPGIANSEVEYIDSENLIDVEDIDTSVKTLVAGLDSKDWVVVCEALNNVRRLSIFHK 114
                 P IA  EVEYI+SENL +V+D D  +K+++AGL+SKDW+ +C+ALNNVRRLSIFHK
Sbjct:    59 EKPEPEIAIVEVEYIESENLDNVDDADAVLKSVLAGLESKDWISLCDALNNVRRLSIFHK 118

Query:   115 EAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDXXXXXXXXXXXXXX 174
             E M+ +L  VIPLVVKSLKNPRSAVCKTA MT+ADIFSAYN+ + D              
Sbjct:   119 EEMMHMLEKVIPLVVKSLKNPRSAVCKTACMTSADIFSAYNNHITDLLEPLLTQLLLKSS 178

Query:   175 XXXRFVCEAAEKALVAMTTWVSPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEG 234
                RFVCEAAEKAL AMT +VSP LLLPKLQP LKNRNPRIRAKAS+CFSRSVPRLGVEG
Sbjct:   179 QDKRFVCEAAEKALTAMTKYVSPTLLLPKLQPCLKNRNPRIRAKASLCFSRSVPRLGVEG 238

Query:   235 IKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSVYEKSHDSA-PATVSDS----PE 289
             IKEYGIDKL+Q AASQLSDQLPESREAART+LLELQSVYEK+H    P T S      PE
Sbjct:   239 IKEYGIDKLVQAAASQLSDQLPESREAARTVLLELQSVYEKAHPLINPETSSPEEQQIPE 298

Query:   290 MD--SWENFCQSKLSPLSAQAVLRVTNI----AREGLV 321
             ++  +WE FC+SKLS LSAQAVLRVTN+    AREGLV
Sbjct:   299 VEPITWETFCKSKLSALSAQAVLRVTNVVTVTAREGLV 336

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2096667 AT3G01450 "AT3G01450" [Arabidopsis thaliana (taxid:3702)]

 Score = 877 (313.8 bits), Expect = 8.6e-88, P = 8.6e-88
 Identities = 190/329 (57%), Positives = 231/329 (70%)

Query:     2 MSETALRDLNTLPSSDRKNESSSKGSFAKPFVGSANENVDVSLVS---THVNGNQTGNAG 58
             M+  AL+DL  LP S+R  +  +K    K   G+A +    + V     H  G++     
Sbjct:     1 MAAKALKDLKNLPVSERNIDYKTKLLVGK-MNGTAEDKPPQNSVPFDHNHPKGDEIEKPE 59

Query:    59 PGIANSEVEYIDSENLIDVEDIDTSVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAML 118
                   E+EYI+S++L +V  +D  +K+LV  LDSKDWV+VC+ALN +RRLSIFHKE ML
Sbjct:    60 AERVIVEIEYIESKDLNNVTQVDAVLKSLVTELDSKDWVLVCDALNTIRRLSIFHKEEML 119

Query:   119 DILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDXXXXXXXXXXXXXXXXXR 178
              +L  VI  +VKSLKNPRSAV KTA MT+ADIFS+YND  ID                 R
Sbjct:   120 HMLEKVILFIVKSLKNPRSAVSKTACMTSADIFSSYNDHTIDQLDLLLTQLLLKSSQDKR 179

Query:   179 FVCEAAEKALVAMTTWVSPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEY 238
             FVCEAAEKALVAMT  VSP LLLPKLQP+LKNRNPRIRAKAS CFSR VPRLG+EGI+EY
Sbjct:   180 FVCEAAEKALVAMTAHVSPALLLPKLQPFLKNRNPRIRAKASTCFSRCVPRLGIEGIREY 239

Query:   239 GIDKLIQVAASQLSDQLPESREAARTLLLELQSVYEKSHDSAPATVSDSPEMDSWENFCQ 298
             GI+KL+Q A+SQLSDQLPESREAAR +LLELQ+VY+K+ +  P    + PE  +W+ FCQ
Sbjct:   240 GIEKLVQAASSQLSDQLPESREAARAVLLELQTVYKKTTNVEPK--EEHPEPVTWQIFCQ 297

Query:   299 SKLSPLSAQAVLRVTNIA---REGLVIGS 324
             S LSPLSAQAV+RVTN+A   REGLV GS
Sbjct:   298 SNLSPLSAQAVIRVTNVAGVAREGLVAGS 326

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2130814 AT4G15830 [Arabidopsis thaliana (taxid:3702)]

 Score = 503 (182.1 bits), Expect = 3.7e-48, P = 3.7e-48
 Identities = 106/257 (41%), Positives = 167/257 (64%)

Query:    61 IANSEVEYIDSENLIDVEDIDTSVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDI 120
             +A S VEY+ SENL    D ++SV+ L+  L SKDW+ VC++LNN RR +I H   +L I
Sbjct:    40 VAESTVEYVASENLKPFSDPESSVQRLLEELASKDWIKVCDSLNNTRRFAIHHSSLLLPI 99

Query:   121 LGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMID-----XXXXXXXXXXXXXXX 175
             L  +I ++VK++KNPRSA+CKT+IMT +DIF+AY +++++                    
Sbjct:   100 LEKLIVVMVKAMKNPRSALCKTSIMTCSDIFTAYGEKLLEGPHLKSMDDLLLQLLMKASQ 159

Query:   176 XXRFVCEAAEKALVAMTTWVSPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGI 235
               +FVCE AEKAL  M   V+ + LL KLQ Y+++ NPR+RAKA++  S  V ++ V  +
Sbjct:   160 DKKFVCEEAEKALNTMVNSVARLPLLRKLQSYVRHSNPRVRAKAAVSTSNCVSKMEVNEM 219

Query:   236 KEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSVYEKSHDSAPATVSDSPEMDSWEN 295
             +E+G+  L Q+AA QLSD+LPE+REAAR+++    S++EK   +       S + ++W+ 
Sbjct:   220 EEFGMILLAQMAADQLSDKLPEAREAARSMV---NSLFEKFTWNEEEDEEGSKQ-EAWKK 275

Query:   296 FCQSKLSPLSAQAVLRV 312
             FC+  ++ L+AQA++++
Sbjct:   276 FCEKNVTGLNAQAMIKI 292

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0051225 "spindle assembly" evidence=RCA

TAIR|locus:2086919 AT3G18530 [Arabidopsis thaliana (taxid:3702)]

 Score = 453 (164.5 bits), Expect = 7.3e-43, P = 7.3e-43
 Identities = 116/270 (42%), Positives = 148/270 (54%)

Query:     2 MSETALRDLNTLPSSDRKNESSSKGSFAKPFVGSANENV---DVSLVSTHVNGNQTGNAG 58
             M+  AL+DL  LP S+R N    K   A    G A +      V L   H  G++     
Sbjct:     1 MAAKALKDLKNLPVSER-NIDCKKNPCAGKMNGKAEDRPPQNSVPLDHNHPTGDEIEKPE 59

Query:    59 PGIANSEVEYIDSENLIDVEDIDTSVKTLVAGLDSKDWVVVCEALNNVRRLSIFH-KEAM 117
                   E+EYI S++L +V ++D  +K  +  L     ++ C+   ++ R S FH  +  
Sbjct:    60 AERVIVELEYIKSKDLNNVAEVDAVLKVSIV-LSWYYTMLYCDFSFSLDRSSSFHFPQGR 118

Query:   118 LDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDXXXXXXXXXXXXXXXXX 177
                   VI  VVKSLKNPRSAV KTA MT+ DIFS+YND + D                 
Sbjct:   119 NAAFAKVILFVVKSLKNPRSAVSKTACMTSEDIFSSYNDHIFDQLDRLLTQLLLKSSQDK 178

Query:   178 RFVCEAAEKALVAMTTWVSPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKE 237
             RFVCEAAE+ALVAMTT VSP LLLPKL+P LKN++PRIRAKAS CFS  VPRLG+EG++E
Sbjct:   179 RFVCEAAERALVAMTTHVSPALLLPKLRPCLKNKSPRIRAKASACFSGCVPRLGIEGMRE 238

Query:   238 YGIDKLIQVAASQLSDQLPESREAARTLLL 267
             YGI+   Q             R+  R LLL
Sbjct:   239 YGIETNSQNLRRLHGQSSWNLRQCIRKLLL 268

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

MGI|MGI:2443498 Fam179a "family with sequence similarity 179, member A" [Mus musculus (taxid:10090)]

 Score = 135 (52.6 bits), Expect = 1.1e-05, P = 1.1e-05
 Identities = 42/144 (29%), Positives = 62/144 (43%)

Query:    91 LDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADI 150
             L+S DW +  + L N++RL+  H E +   L DV   V   + N RS V + AI T  D+
Sbjct:   500 LNSNDWQMKEKGLVNIQRLAACHSEVLGTRLHDVSLAVTAEVTNLRSKVSRLAISTLGDL 559

Query:   151 FSAYNDRMIDXXXXXXXXXXXXXXXXXRFVCEAAEKALVAMTTWVSPILLLPKLQPY-LK 209
             F      M                    F+  AA +AL AM   V+P   L  L    + 
Sbjct:   560 FRVLKKNMDQEAEEIVRCLLQKMGNTSEFIQRAANRALGAMVENVTPARALVALTSAGVY 619

Query:   210 NRNPRIRAKASMCFSRSVPRLGVE 233
             +RNP +R   +   S  + ++G E
Sbjct:   620 HRNPLVRKCTAKHLSAVLEQIGAE 643

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

FB|FBgn0259818 CG42399 [Drosophila melanogaster (taxid:7227)]

 Score = 130 (50.8 bits), Expect = 9.1e-05, Sum P(2) = 9.1e-05
 Identities = 47/183 (25%), Positives = 80/183 (43%)

Query:    91 LDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADI 150
             LDS +W V    L ++ RL  +H E + + +      + +S++N RS V + +   AA++
Sbjct:  1442 LDSSNWEVNVSGLKSMVRLIRYHAETLDNQMHMTCIQLTRSVRNLRSQVARASCQAAAEL 1501

Query:   151 FSAYNDRMIDXXXXXXXXXXXXXXXXXRFVCEAAEKALVAMTTWVSPILLLPKLQPY-LK 209
             FS  +  +                   RF+   A +AL +M     P  +L  L     +
Sbjct:  1502 FSLKSTSLQQECDDLVCALLHRTADTNRFLRADANRALESMVDHAQPQKILNILATKGAQ 1561

Query:   210 NRNPRIRAKASMCFSRSVPRLGVEGIKEYGI---DKLIQVAASQLSDQLPESREAARTLL 266
             ++N  +R  ++    R V RLG + I   G    DK   V A+ L +   E+R  A++L 
Sbjct:  1562 HQNALVRTTSAKLLFRLVERLGSDRIYAMGRESRDKFFVVGANLLLEGSLETRSYAKSLF 1621

Query:   267 LEL 269
               L
Sbjct:  1622 RAL 1624

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	324
KOG2933	334	consensus Uncharacterized conserved protein [Funct	100.0
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	100.0
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	99.67
KOG1242	569	consensus Protein containing adaptin N-terminal re	99.0
KOG1242	569	consensus Protein containing adaptin N-terminal re	98.37
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	98.13
PF05004	309	IFRD: Interferon-related developmental regulator (	98.01
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	97.97
PRK09687	280	putative lyase; Provisional	97.75
KOG2956	516	consensus CLIP-associating protein [General functi	97.63
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	97.59
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	97.56
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	97.52
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	97.48
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	97.46
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	97.42
PRK09687	280	putative lyase; Provisional	97.42
KOG0212	675	consensus Uncharacterized conserved protein [Funct	97.27
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	97.26
PTZ00429	746	beta-adaptin; Provisional	97.24
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	97.22
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.12
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	97.07
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	96.87
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	96.81
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	96.74
PF10274	183	ParcG: Parkin co-regulated protein; InterPro: IPR0	96.65
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	96.65
KOG2956	516	consensus CLIP-associating protein [General functi	96.65
PTZ00429	746	beta-adaptin; Provisional	96.62
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	96.57
COG5096	757	Vesicle coat complex, various subunits [Intracellu	96.56
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	96.38
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	96.35
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	96.33
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	96.3
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	96.19
KOG1824	1233	consensus TATA-binding protein-interacting protein	96.06
KOG1824	1233	consensus TATA-binding protein-interacting protein	96.0
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	95.92
KOG0212	675	consensus Uncharacterized conserved protein [Funct	95.86
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	95.84
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	95.75
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	95.68
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	95.66
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	95.42
PF04118	307	Dopey_N: Dopey, N-terminal; InterPro: IPR007249 Do	95.41
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	95.41
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	95.36
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	95.27
cd03568	144	VHS_STAM VHS domain family, STAM subfamily; member	95.12
KOG0392	1549	consensus SNF2 family DNA-dependent ATPase domain-	94.72
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	94.62
PF05004	309	IFRD: Interferon-related developmental regulator (	94.59
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	94.47
cd03561	133	VHS VHS domain family; The VHS domain is present i	94.34
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	94.21
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	94.05
KOG1243	690	consensus Protein kinase [General function predict	94.04
PF00790	140	VHS: VHS domain; InterPro: IPR002014 The VHS domai	93.83
PF08506	370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	93.69
KOG2032	533	consensus Uncharacterized conserved protein [Funct	93.69
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	93.47
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	93.43
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	93.42
KOG0414	1251	consensus Chromosome condensation complex Condensi	93.29
COG1413	335	FOG: HEAT repeat [Energy production and conversion	93.15
cd03567	139	VHS_GGA VHS domain family, GGA subfamily; GGA (Gol	93.06
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	92.98
cd03569	142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	92.88
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	92.86
PLN03076	1780	ARF guanine nucleotide exchange factor (ARF-GEF);	92.53
COG1413	335	FOG: HEAT repeat [Energy production and conversion	92.36
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	92.31
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	92.23
TIGR02270	410	conserved hypothetical protein. Members are found	92.12
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	92.04
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	92.02
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	92.01
KOG2149	393	consensus Uncharacterized conserved protein [Funct	91.82
PF10274	183	ParcG: Parkin co-regulated protein; InterPro: IPR0	91.76
PF14500	262	MMS19_N: Dos2-interacting transcription regulator	91.76
KOG4653	982	consensus Uncharacterized conserved protein [Funct	91.22
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	91.21
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	90.72
smart00288	133	VHS Domain present in VPS-27, Hrs and STAM. Unpubl	90.68
TIGR02270	410	conserved hypothetical protein. Members are found	90.59
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	90.4
KOG0803	1312	consensus Predicted E3 ubiquitin ligase [Posttrans	90.39
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	90.02
KOG2062	929	consensus 26S proteasome regulatory complex, subun	89.74
PF13251	182	DUF4042: Domain of unknown function (DUF4042)	89.53
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	89.52
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	89.2
KOG2025	892	consensus Chromosome condensation complex Condensi	88.97
PF12830	187	Nipped-B_C: Sister chromatid cohesion C-terminus	88.34
KOG2032	533	consensus Uncharacterized conserved protein [Funct	87.87
smart00802	107	UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1.	87.06
PF12231	372	Rif1_N: Rap1-interacting factor 1 N terminal; Inte	86.81
PF12783	168	Sec7_N: Guanine nucleotide exchange factor in Golg	86.12
cd03565	141	VHS_Tom1 VHS domain family, Tom1 subfamily; The VH	86.09
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	86.08
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	86.03
KOG4524	1014	consensus Uncharacterized conserved protein [Funct	85.96
PF08713	213	DNA_alkylation: DNA alkylation repair enzyme; Inte	85.12
PF12830	187	Nipped-B_C: Sister chromatid cohesion C-terminus	84.85
PF10521	282	DUF2454: Protein of unknown function (DUF2454); In	84.55
PF08623	169	TIP120: TATA-binding protein interacting (TIP20);	84.35
PF08064	107	UME: UME (NUC010) domain; InterPro: IPR012993 This	83.78
cd00197	115	VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamil	83.42
KOG1243	690	consensus Protein kinase [General function predict	83.41
PF08506	370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	83.4
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	83.3
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	83.21
PF05536	543	Neurochondrin: Neurochondrin	82.97
cd03572	122	ENTH_epsin_related ENTH domain, Epsin Related fami	82.85
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	82.63
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	82.27
PF12231	372	Rif1_N: Rap1-interacting factor 1 N terminal; Inte	81.66
PF00790	140	VHS: VHS domain; InterPro: IPR002014 The VHS domai	80.85
KOG4653	982	consensus Uncharacterized conserved protein [Funct	80.34
COG5116	926	RPN2 26S proteasome regulatory complex component [	80.32

>KOG2933 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=2.5e-58  Score=431.22  Aligned_cols=321  Identities=45%  Similarity=0.608  Sum_probs=302.1

Q ss_pred             CchhHhhhhcc-CCCC-ccCCCCCCCCccCCCcccCCCCCcc-------ccccccCCCCCCcCCCCCCCCcccceeccCC
Q 020587            2 MSETALRDLNT-LPSS-DRKNESSSKGSFAKPFVGSANENVD-------VSLVSTHVNGNQTGNAGPGIANSEVEYIDSE   72 (324)
Q Consensus         2 ~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~yi~~e   72 (324)
                      |..++|+|+++ +|++ +|++|  .|++..|||.|+++|+.+       .+.+|+++++.++++++.+.+.++++|+.++
T Consensus         1 ~~a~~l~~~~~~~p~sqer~~d--~~as~~~~~~gK~~gs~e~~p~~~~~pl~h~~~t~~~~~~~~~e~~~~~~e~~~sk   78 (334)
T KOG2933|consen    1 MDAKALKDLRNALPVSQERFQD--KKASIVKSCMGKMSGSHEDKPPTNHPPLDHNSPTPQEAIKQEGERLIHSVEYIVSK   78 (334)
T ss_pred             CcchhhhhccccCccchhcccc--cccccccchhhcccCccccCCCCCCCCccccCCCchhhhccccccccccHHHhhhc
Confidence            67899999999 8887 99999  889999999999999998       5668999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHH
Q 020587           73 NLIDVEDIDTSVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFS  152 (324)
Q Consensus        73 eL~pl~dpe~~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~  152 (324)
                      +|.||++|+..+++++.+|+|+||+..|+||+.||||+.||++.+..+|++++..|++.+|||||+|||+||+|++|||+
T Consensus        79 ~l~~fd~p~~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs  158 (334)
T KOG2933|consen   79 NLSPFDDPEAALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFS  158 (334)
T ss_pred             ccCccCcHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhhHHhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccc
Q 020587          153 AYNDRMIDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGV  232 (324)
Q Consensus       153 ~L~~~m~~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~  232 (324)
                      .|++.+++.+|.++.+||+|++++|+|||++|++||.+|+.+++|+++++.|+++++|.||.+|++.+.|+.+|+.++|+
T Consensus       159 ~ln~~i~~~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~v  238 (334)
T KOG2933|consen  159 SLNNSIDQELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQKLLRKLIPILQHSNPRVRAKAALCFSRCVIRLGV  238 (334)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChHHHHHHHHHHHhhhchhhhhhhhccccccceeccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhcCC-CCCCCCCCCcchhHHHHHHHhcCChhhHHHHHH
Q 020587          233 EGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSVYEKSHD-SAPATVSDSPEMDSWENFCQSKLSPLSAQAVLR  311 (324)
Q Consensus       233 ~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~~~a~-~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~  311 (324)
                      ..+..++...+.+++..-+.|..|+.|++||-.+..+..+|..... +.+...+.+-+...|+.||++++++.++|+++|
T Consensus       239 ~~~~~~~~~dl~~a~~~~~~d~Lp~~~~~a~~~~~~~~~v~~~~~~lv~~e~~n~e~r~~t~~~v~~~~~~~~~~~~~lr  318 (334)
T KOG2933|consen  239 LPVLLQGSCDLSRAAQEQGSDKLPELREAARFVRLELKEVLKTAQELVEDESENPEVRKATWRGVCPKSLTGLSAQAVLR  318 (334)
T ss_pred             cchhhHhHHHHHHHHHhhhcccccccccchhHHHHhHHHHHHHhhhhcchhhcCcchhhhhhhhcCccCCchhhHHHHHH
Confidence            9999999999999999999999999999999999999999987664 222222222357899999999999999999999


Q ss_pred             Hhhh---hccccccCC
Q 020587          312 VTNI---AREGLVIGS  324 (324)
Q Consensus       312 ~~~~---~~~~~~~~~  324 (324)
                      ++++   +|+|++.|+
T Consensus       319 ~~n~~~~~R~~~~~~~  334 (334)
T KOG2933|consen  319 VTNVAGWAREGLVLGS  334 (334)
T ss_pred             HhhhhhHhhhcccccC
Confidence            9995   799999875

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=100.00  E-value=5.8e-32  Score=245.86  Aligned_cols=187  Identities=29%  Similarity=0.373  Sum_probs=149.7

Q ss_pred             CCCCHHHHHHHHHHHHHHHhHc-----HHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhHHHHH
Q 020587           92 DSKDWVVVCEALNNVRRLSIFH-----KEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDPLL  166 (324)
Q Consensus        92 ~s~dW~~r~eaL~~LRrLa~~h-----~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d~ll  166 (324)
                      .+.||++|++||+.||+++.+|     ++.+...+++++..+.+.++|+||+|+++||.++++|+..+++.|+++++.++
T Consensus        17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l   96 (228)
T PF12348_consen   17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILL   96 (228)
T ss_dssp             T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence            5789999999999999999988     34455678888899999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHHHHhhcC-hhhh-HHHHhhhccCCCHHHHHHHHHHHHhhccccc--ccchhhc-cHH
Q 020587          167 VQLLLKSSQDKRFVCEAAEKALVAMTTWVS-PILL-LPKLQPYLKNRNPRIRAKASMCFSRSVPRLG--VEGIKEY-GID  241 (324)
Q Consensus       167 ~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs-~~~l-l~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g--~~~i~~~-~~~  241 (324)
                      +.||++++++|+||+++|..||..|+++++ +.++ ++.+..+.+||||.+|..++.|+..+++.++  ...+... .++
T Consensus        97 ~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~  176 (228)
T PF12348_consen   97 PPLLKKLGDSKKFIREAANNALDAIIESCSYSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLK  176 (228)
T ss_dssp             HHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHH
T ss_pred             HHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHH
Confidence            999999999999999999999999999999 6777 6788899999999999999999999999999  3333322 368


Q ss_pred             HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhcCC
Q 020587          242 KLIQVAASQLSDQLPESREAARTLLLELQSVYEKSHD  278 (324)
Q Consensus       242 ~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~~~a~  278 (324)
                      .+++.+.++++|++|+||++||++|+.|+++||+.+.
T Consensus       177 ~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a~  213 (228)
T PF12348_consen  177 QLVKALVKLLSDADPEVREAARECLWALYSHFPERAE  213 (228)
T ss_dssp             HHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH-
T ss_pred             HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhhc
Confidence            9999999999999999999999999999999999885

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=99.67  E-value=4e-15  Score=157.44  Aligned_cols=194  Identities=20%  Similarity=0.176  Sum_probs=175.8

Q ss_pred             HHHHhhcCCCCHHHHHHHHHHHHHHHhHcH-HHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhHH
Q 020587           85 KTLVAGLDSKDWVVVCEALNNVRRLSIFHK-EAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLD  163 (324)
Q Consensus        85 ~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~-~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d  163 (324)
                      ..+...+.++||++|.|||..+-....... +...+..+.+...+.-..+|.+..|+..|..++..|+..|+..+.+|..
T Consensus       256 ~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~  335 (815)
T KOG1820|consen  256 KNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAK  335 (815)
T ss_pred             hHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHH
Confidence            477788899999999999999988866544 2333445556667777889999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHHH
Q 020587          164 PLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKL  243 (324)
Q Consensus       164 ~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~l  243 (324)
                      .+.+.||+++++.+.++++++..++++++..++..++++.+..+++||||++|..+..++.+++..+++........+.+
T Consensus       336 ~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l  415 (815)
T KOG1820|consen  336 NVFPSLLDRLKEKKSELRDALLKALDAILNSTPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTL  415 (815)
T ss_pred             hhcchHHHHhhhccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999765556689999


Q ss_pred             HHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhcCC
Q 020587          244 IQVAASQLSDQLPESREAARTLLLELQSVYEKSHD  278 (324)
Q Consensus       244 l~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~~~a~  278 (324)
                      ++.+.+.++|.+.+||.+|..++..+++++++...
T Consensus       416 ~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~  450 (815)
T KOG1820|consen  416 VPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVF  450 (815)
T ss_pred             hHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHH
Confidence            99999999999999999999999999999987764

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=99.00  E-value=9.8e-09  Score=104.68  Aligned_cols=191  Identities=18%  Similarity=0.228  Sum_probs=152.3

Q ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhHH
Q 020587           84 VKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLD  163 (324)
Q Consensus        84 L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d  163 (324)
                      +...+..+.+..|..+.-++.-+..++..-|..+...+.++++.+.+.+.|....|.++|..|+-.+.....+   +.+.
T Consensus       256 lpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN---~dI~  332 (569)
T KOG1242|consen  256 LPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDN---PDIQ  332 (569)
T ss_pred             hhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhcc---HHHH
Confidence            4445555555699999999999999988889999999999999999999999999999999999998888763   3377


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHH-HHHhhcC---hhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccc-cccchhhc
Q 020587          164 PLLVQLLLKSSQDKRFVCEAAEKALV-AMTTWVS---PILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRL-GVEGIKEY  238 (324)
Q Consensus       164 ~ll~~LL~Ka~~sk~FI~e~A~~AL~-amv~~vs---~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~-g~~~i~~~  238 (324)
                      .++|.|+...++.+.-+.+....-.. +.+..+.   -.-++|.|.+++..++..++++++..+.+.+..+ ++..+..+
T Consensus       333 ~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapf  412 (569)
T KOG1242|consen  333 KIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPF  412 (569)
T ss_pred             HHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhh
Confidence            77888888877765333332222211 2233332   2337889999999999999999999999999988 44555556


Q ss_pred             cHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhcCC
Q 020587          239 GIDKLIQVAASQLSDQLPESREAARTLLLELQSVYEKSHD  278 (324)
Q Consensus       239 ~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~~~a~  278 (324)
                       ++.|++.+..-+.|..||+|.-+-++|..+.+-.+...+
T Consensus       413 -l~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~f  451 (569)
T KOG1242|consen  413 -LPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEVSF  451 (569)
T ss_pred             -HHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhcc
Confidence             999999999999999999999999999877776665553

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=98.37  E-value=1.4e-05  Score=81.94  Aligned_cols=191  Identities=20%  Similarity=0.122  Sum_probs=138.0

Q ss_pred             HHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHH-HHHHHHHHHHHhhhhH
Q 020587           80 IDTSVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKT-AIMTAADIFSAYNDRM  158 (324)
Q Consensus        80 pe~~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~-A~~tl~dLf~~L~~~m  158 (324)
                      ++..+..+++.+++.+-..+..+-..+-++.....-.. ..=..++..+.+.+.|..+..-|+ +..+..-.+..||+.+
T Consensus       132 ~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~-~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~  210 (569)
T KOG1242|consen  132 GEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIES-LKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPF  210 (569)
T ss_pred             HHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhh-hhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCC
Confidence            33344455555555544444444444444433221111 112346778889999999999996 8888899999999999


Q ss_pred             HhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhh---hHHHHhhhccCCCHHHHHHHHHHHHhhcccccccch
Q 020587          159 IDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPIL---LLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGI  235 (324)
Q Consensus       159 ~~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~---ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i  235 (324)
                      +||+-.++|.+|.++++..+-||++|..|..+|..+.++..   ++|.+..++.....+-...+.+++..+.. ..+. .
T Consensus       211 EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~-~ap~-q  288 (569)
T KOG1242|consen  211 EPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMAD-CAPK-Q  288 (569)
T ss_pred             CchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHH-hchH-H
Confidence            99999999999999999999999999999999999988754   66665555544455555555566653333 2222 3


Q ss_pred             hhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Q 020587          236 KEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSVY  273 (324)
Q Consensus       236 ~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~  273 (324)
                      ....+..+++.+..-+.|..||+|++|..++..+-.+.
T Consensus       289 Ls~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svi  326 (569)
T KOG1242|consen  289 LSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVI  326 (569)
T ss_pred             HHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhh
Confidence            44569999999999999999999999999998665544

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.13  E-value=0.00019  Score=78.04  Aligned_cols=188  Identities=19%  Similarity=0.211  Sum_probs=145.1

Q ss_pred             hhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHH
Q 020587           89 AGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQ  168 (324)
Q Consensus        89 ~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d~ll~~  168 (324)
                      ..|.|.+|..|.-||--|-.++...++.+.+.|.+|+..|+..++|+---|=-.||.++|.|...|...+..+....++.
T Consensus       355 ~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~  434 (1075)
T KOG2171|consen  355 AMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPP  434 (1075)
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccH
Confidence            44579999999999999999999999999999999999999999999999999999999999999999999887776665


Q ss_pred             HH-HHhcC-ChHHHHHHHHHHHHHHHhhcChhhhHHH--------HhhhccCCCHHHHHHHHHHHHhhcccccccchhhc
Q 020587          169 LL-LKSSQ-DKRFVCEAAEKALVAMTTWVSPILLLPK--------LQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEY  238 (324)
Q Consensus       169 LL-~Ka~~-sk~FI~e~A~~AL~amv~~vs~~~ll~~--------L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~  238 (324)
                      +| ...-+ .+.-|...|..||......|....+-|.        +..-.++.++.||..+..-|..+..-.+.. +..|
T Consensus       435 aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~-F~pY  513 (1075)
T KOG2171|consen  435 ALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEK-FIPY  513 (1075)
T ss_pred             HHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhh-hHhH
Confidence            44 44333 3667778888888888888877665442        334456888999999988888877766555 4445


Q ss_pred             cHHHHHHHHHHhccCCC-HHHHHHHHH---HHHHHHHHhhhcCC
Q 020587          239 GIDKLIQVAASQLSDQL-PESREAART---LLLELQSVYEKSHD  278 (324)
Q Consensus       239 ~~~~ll~~l~~~L~D~~-pEvR~~AR~---~l~~L~~~~~~~a~  278 (324)
                       .+++++.+..+|.-++ -|-|....+   ++..+-...++..+
T Consensus       514 -~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F  556 (1075)
T KOG2171|consen  514 -FDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKF  556 (1075)
T ss_pred             -HHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhh
Confidence             6889999999998777 444444433   44444445555555

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=98.01  E-value=0.0011  Score=64.07  Aligned_cols=196  Identities=16%  Similarity=0.090  Sum_probs=143.4

Q ss_pred             CHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhHc--HHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhh-
Q 020587           79 DIDTSVKTLVAGLDSKDWVVVCEALNNVRRLSIFH--KEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYN-  155 (324)
Q Consensus        79 dpe~~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h--~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~-  155 (324)
                      +.+..|.++++.+.++.=+.|..||..+.++..+|  ++++.....+++..+.+.+|..++.=...|+.+++-++-.+| 
T Consensus        40 ~~e~~L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~  119 (309)
T PF05004_consen   40 DLEDKLKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGA  119 (309)
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCC
Confidence            44567999999999888889999999999998766  789999999999999999999999888889999999999987 


Q ss_pred             -hhHHhhHHHHHHHHHHHhcCC--hHHHHHHHHHHHHHHHhh--cChhh------hHHHHhh--hcc----------CCC
Q 020587          156 -DRMIDLLDPLLVQLLLKSSQD--KRFVCEAAEKALVAMTTW--VSPIL------LLPKLQP--YLK----------NRN  212 (324)
Q Consensus       156 -~~m~~~~d~ll~~LL~Ka~~s--k~FI~e~A~~AL~amv~~--vs~~~------ll~~L~~--~~~----------hKN  212 (324)
                       ..-+..++.+.+.|..-+.+.  ..-+|..+-.||..++--  ..+..      ++..++.  +.+          ..+
T Consensus       120 g~~~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~  199 (309)
T PF05004_consen  120 GEDSEEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDD  199 (309)
T ss_pred             CccHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCc
Confidence             666777888888776665544  234556666666544322  22222      3332322  111          124


Q ss_pred             HHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhh
Q 020587          213 PRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSVYEK  275 (324)
Q Consensus       213 p~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~~  275 (324)
                      +.|...+...-.-++..++...+.. ..+..++.+..+|.-.+.+||-+|=+++..|.....+
T Consensus       200 ~~l~~aAL~aW~lLlt~~~~~~~~~-~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~  261 (309)
T PF05004_consen  200 AALVAAALSAWALLLTTLPDSKLED-LLEEALPALSELLDSDDVDVRIAAGEAIALLYELARD  261 (309)
T ss_pred             cHHHHHHHHHHHHHHhcCCHHHHHH-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhc
Confidence            5677776665555555555544443 3677888999999999999999999999988777764

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.97  E-value=0.00098  Score=72.76  Aligned_cols=195  Identities=18%  Similarity=0.179  Sum_probs=146.1

Q ss_pred             CCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHcc--CcchHHHHHHHHHHHHHHHH---hhhhHHhhHHHHHHH
Q 020587           94 KDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLK--NPRSAVCKTAIMTAADIFSA---YNDRMIDLLDPLLVQ  168 (324)
Q Consensus        94 ~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vk--sLRS~Vsk~A~~tl~dLf~~---L~~~m~~~~d~ll~~  168 (324)
                      .|=..-.++|+.+-.|+...|.++.+.+.+|+....+..+  ++...+=..|+.++.-+.++   ..+...++.+.++++
T Consensus       218 ~d~~~a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~  297 (1075)
T KOG2171|consen  218 GDDDAAKSALEALIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPV  297 (1075)
T ss_pred             cchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHH
Confidence            3433345666666677777889999999998876666554  58888888898888888877   445556788999999


Q ss_pred             HHHHhcC---Ch-------------HHHHHHHHHHHHHHHhhcChhhhHH----HHhhhccCCCHHHHHHHHHHHHhhcc
Q 020587          169 LLLKSSQ---DK-------------RFVCEAAEKALVAMTTWVSPILLLP----KLQPYLKNRNPRIRAKASMCFSRSVP  228 (324)
Q Consensus       169 LL~Ka~~---sk-------------~FI~e~A~~AL~amv~~vs~~~ll~----~L~~~~~hKNp~VR~~aa~~L~~~v~  228 (324)
                      +|+.+-+   +.             .-....|..+|+.+..+.++..++|    .+...+++-++.-|..+...|..+.+
T Consensus       298 ~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~E  377 (1075)
T KOG2171|consen  298 LLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAE  377 (1075)
T ss_pred             HHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHc
Confidence            9987643   11             1234568899999999999988776    45678889999999999888888777


Q ss_pred             cccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCcchhHHHHHHHhcCChhhH
Q 020587          229 RLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSVYEKSHDSAPATVSDSPEMDSWENFCQSKLSPLSA  306 (324)
Q Consensus       229 ~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~~~a~~~~~~~~~~~~~~~w~~~~~~~l~~~~~  306 (324)
                        |........++++++++..+|+|..|-||++|=.++..+..-|.                -..+.++++.++|...
T Consensus       378 --Gc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~----------------p~iqk~~~e~l~~aL~  437 (1075)
T KOG2171|consen  378 --GCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQ----------------PEIQKKHHERLPPALI  437 (1075)
T ss_pred             --ccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhc----------------HHHHHHHHHhccHHHH
Confidence              44434444699999999999999999999999988875544443                3456666666665543

>PRK09687 putative lyase; Provisional

Probab=97.75  E-value=0.0015  Score=62.14  Aligned_cols=166  Identities=18%  Similarity=0.122  Sum_probs=104.0

Q ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHHHHh-----------HcHH--------HHHHhhh-------hHHHHHHHH-ccCcc
Q 020587           84 VKTLVAGLDSKDWVVVCEALNNVRRLSI-----------FHKE--------AMLDILG-------DVIPLVVKS-LKNPR  136 (324)
Q Consensus        84 L~~~l~~L~s~dW~~r~eaL~~LRrLa~-----------~h~~--------~l~~~L~-------~iv~~l~~~-vksLR  136 (324)
                      +..++..|.++|...|..++..|+.+-.           .+++        ...++|+       +.++.+... .++.-
T Consensus        25 ~~~L~~~L~d~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D~d  104 (280)
T PRK09687         25 DDELFRLLDDHNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALEDKS  104 (280)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCCC
Confidence            4567777888888888888888775421           1110        0012232       233444433 34444


Q ss_pred             hHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhhhHHHHhhhccCCCHHHH
Q 020587          137 SAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPILLLPKLQPYLKNRNPRIR  216 (324)
Q Consensus       137 S~Vsk~A~~tl~dLf~~L~~~m~~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~ll~~L~~~~~hKNp~VR  216 (324)
                      ..|-+.|+.++|++....    ......++..|.....+.+..||..+-.+|.    .+.....++.|...+++.++.||
T Consensus       105 ~~VR~~A~~aLG~~~~~~----~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg----~~~~~~ai~~L~~~L~d~~~~VR  176 (280)
T PRK09687        105 ACVRASAINATGHRCKKN----PLYSPKIVEQSQITAFDKSTNVRFAVAFALS----VINDEAAIPLLINLLKDPNGDVR  176 (280)
T ss_pred             HHHHHHHHHHHhcccccc----cccchHHHHHHHHHhhCCCHHHHHHHHHHHh----ccCCHHHHHHHHHHhcCCCHHHH
Confidence            555557777777653211    1112334555556666667778888777774    34456677888888888888888


Q ss_pred             HHHHHHHHhhcccccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHH
Q 020587          217 AKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLL  267 (324)
Q Consensus       217 ~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~  267 (324)
                      ..++..|-.+    +.      +.+...+.+.+.+.|.+++||..|...+.
T Consensus       177 ~~A~~aLg~~----~~------~~~~~~~~L~~~L~D~~~~VR~~A~~aLg  217 (280)
T PRK09687        177 NWAAFALNSN----KY------DNPDIREAFVAMLQDKNEEIRIEAIIGLA  217 (280)
T ss_pred             HHHHHHHhcC----CC------CCHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence            8887777655    11      13456677777889999999999888885

>KOG2956 consensus CLIP-associating protein [General function prediction only]

Probab=97.63  E-value=0.0092  Score=60.22  Aligned_cols=192  Identities=11%  Similarity=0.170  Sum_probs=145.2

Q ss_pred             HHHHHHhhcCC-CCHHHHHHHHHHHHHHHhHcHHHHH-HhhhhHHHHHHHHccC-cchHHHHHHHHHHHHHHHHhhhhHH
Q 020587           83 SVKTLVAGLDS-KDWVVVCEALNNVRRLSIFHKEAML-DILGDVIPLVVKSLKN-PRSAVCKTAIMTAADIFSAYNDRMI  159 (324)
Q Consensus        83 ~L~~~l~~L~s-~dW~~r~eaL~~LRrLa~~h~~~l~-~~L~~iv~~l~~~vks-LRS~Vsk~A~~tl~dLf~~L~~~m~  159 (324)
                      .+.+.+.+++. +.=.++-+||..|..+......-+. ..+.+|+..+...+.+ =....-+.|+..+.+|+++-...|.
T Consensus       287 ~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~  366 (516)
T KOG2956|consen  287 LVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLF  366 (516)
T ss_pred             HHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhh
Confidence            45677777764 4788899999999998776543343 4678888888888887 5556667899999999999999999


Q ss_pred             hhHHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHhhcChhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhc
Q 020587          160 DLLDPLLVQLLLKSSQD-KRFVCEAAEKALVAMTTWVSPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEY  238 (324)
Q Consensus       160 ~~~d~ll~~LL~Ka~~s-k~FI~e~A~~AL~amv~~vs~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~  238 (324)
                      ++.+..+..+|.-+.++ +..++.+++.|+....++-+... +..|.+.+..---..-..+..++.++++++..+.+...
T Consensus       367 DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~-I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~l  445 (516)
T KOG2956|consen  367 DSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQC-IVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNL  445 (516)
T ss_pred             chHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhH-HHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHh
Confidence            99999999999999987 66777777777777666665554 33232222221222223345589999999988765544


Q ss_pred             cHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhc
Q 020587          239 GIDKLIQVAASQLSDQLPESREAARTLLLELQSVYEKS  276 (324)
Q Consensus       239 ~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~~~  276 (324)
                       ++-+.+++.+.-+-.+..||+.+--+|-.+....|..
T Consensus       446 -l~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~  482 (516)
T KOG2956|consen  446 -LPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGME  482 (516)
T ss_pred             -hhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHH
Confidence             8899999999999999999999999998888877733

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.59  E-value=0.0013  Score=66.48  Aligned_cols=176  Identities=17%  Similarity=0.128  Sum_probs=97.2

Q ss_pred             HHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhHHHHH
Q 020587           87 LVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDPLL  166 (324)
Q Consensus        87 ~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d~ll  166 (324)
                      +...+.+++|.-|..|+..+.++....|+.+...   +++.+.+.+++....|..+|+.++.++ +.-.+...+.+..++
T Consensus       119 v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~---~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~~~~~  194 (526)
T PF01602_consen  119 VIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDE---LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSLIPKLI  194 (526)
T ss_dssp             HHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGG---HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTHHHHHH
T ss_pred             HHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHH---HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhhHHHHH
Confidence            3333445555555555555555555444433221   344445555555555666666555555 111111113334444


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHHHHhhcCh----hhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHH
Q 020587          167 VQLLLKSSQDKRFVCEAAEKALVAMTTWVSP----ILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDK  242 (324)
Q Consensus       167 ~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~----~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~  242 (324)
                      ..|....+..+.|+....-+.|..++..-..    ..+++.+...+++.++.|+-.++.++..+-....       ....
T Consensus       195 ~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~-------~~~~  267 (526)
T PF01602_consen  195 RILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE-------LLQK  267 (526)
T ss_dssp             HHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH-------HHHH
T ss_pred             HHhhhcccccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH-------HHHh
Confidence            4444444555555555554444443332211    2255556666666666666666666664333211       2678


Q ss_pred             HHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Q 020587          243 LIQVAASQLSDQLPESREAARTLLLELQSVY  273 (324)
Q Consensus       243 ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~  273 (324)
                      +++.+.+++++.++++|..+-..+..+...+
T Consensus       268 ~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~  298 (526)
T PF01602_consen  268 AINPLIKLLSSSDPNVRYIALDSLSQLAQSN  298 (526)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC
T ss_pred             hHHHHHHHhhcccchhehhHHHHHHHhhccc
Confidence            8999999999999999999999988776666

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=97.56  E-value=0.00078  Score=54.36  Aligned_cols=92  Identities=21%  Similarity=0.193  Sum_probs=65.2

Q ss_pred             HHHHHHHHHHHHHhhhhHHhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhhhHHHHhhhccCCCHHHHHHHH
Q 020587          141 KTAIMTAADIFSAYNDRMIDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPILLLPKLQPYLKNRNPRIRAKAS  220 (324)
Q Consensus       141 k~A~~tl~dLf~~L~~~m~~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~ll~~L~~~~~hKNp~VR~~aa  220 (324)
                      +-++++++..+.+++..+.++++.+++++|.-+.|                                   .+++||..++
T Consensus         4 ~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D-----------------------------------~d~rVRy~Ac   48 (97)
T PF12755_consen    4 KGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDD-----------------------------------QDSRVRYYAC   48 (97)
T ss_pred             hHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCC-----------------------------------CcHHHHHHHH
Confidence            45778888888888877777777776666655544                                   5556666666


Q ss_pred             HHHHhhcccccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 020587          221 MCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLEL  269 (324)
Q Consensus       221 ~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L  269 (324)
                      +.|.++++..+.. +..+ ...+.+.+.+.+.|.++.||..|.-+-+.|
T Consensus        49 EaL~ni~k~~~~~-~l~~-f~~IF~~L~kl~~D~d~~Vr~~a~~Ld~ll   95 (97)
T PF12755_consen   49 EALYNISKVARGE-ILPY-FNEIFDALCKLSADPDENVRSAAELLDRLL   95 (97)
T ss_pred             HHHHHHHHHHHHH-HHHH-HHHHHHHHHHHHcCCchhHHHHHHHHHHHh
Confidence            6666666554433 3333 688999999999999999999997655443

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=97.52  E-value=0.0013  Score=52.28  Aligned_cols=109  Identities=21%  Similarity=0.208  Sum_probs=83.4

Q ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhh-hHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhH
Q 020587           84 VKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILG-DVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLL  162 (324)
Q Consensus        84 L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~-~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~  162 (324)
                      +..+++.|.+.+|..+..++..|..++...++.....+. ++++.+++.+.+-...|.+.|+.+++.|............
T Consensus         9 i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~   88 (120)
T cd00020           9 LPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIVL   88 (120)
T ss_pred             hHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHHH
Confidence            556777788889999999999999999876665555455 7888999999998999999999999999876654444333


Q ss_pred             H-HHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 020587          163 D-PLLVQLLLKSSQDKRFVCEAAEKALVAMT  192 (324)
Q Consensus       163 d-~ll~~LL~Ka~~sk~FI~e~A~~AL~amv  192 (324)
                      + .+++.|++...+.+.-+++.+..+|..++
T Consensus        89 ~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~  119 (120)
T cd00020          89 EAGGVPKLVNLLDSSNEDIQKNATGALSNLA  119 (120)
T ss_pred             HCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence            3 26777777776666677777777776654

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=97.48  E-value=0.0026  Score=51.33  Aligned_cols=88  Identities=18%  Similarity=0.177  Sum_probs=81.6

Q ss_pred             HHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHHHHhcCCh
Q 020587           98 VVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLLKSSQDK  177 (324)
Q Consensus        98 ~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d~ll~~LL~Ka~~sk  177 (324)
                      .|..||--|..+++.-+..+...+.+|++.|+..+.|--+.|=-.||.++..+.+..+..+.+++..+...|.+.++|..
T Consensus         2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d   81 (97)
T PF12755_consen    2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPD   81 (97)
T ss_pred             chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence            36778889999988877778889999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHH
Q 020587          178 RFVCEAAE  185 (324)
Q Consensus       178 ~FI~e~A~  185 (324)
                      .-|+..|+
T Consensus        82 ~~Vr~~a~   89 (97)
T PF12755_consen   82 ENVRSAAE   89 (97)
T ss_pred             hhHHHHHH
Confidence            88888874

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.46  E-value=0.0047  Score=62.44  Aligned_cols=171  Identities=18%  Similarity=0.174  Sum_probs=119.7

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHh-h
Q 020587           83 SVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMID-L  161 (324)
Q Consensus        83 ~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~-~  161 (324)
                      .+..+++... .+=.++.+++..|=.+.....     .+......+++.+.+-.-.+-|-+-..+..++     ..++ .
T Consensus         8 el~~~~~~~~-~~~~~~~~~l~kli~~~~~G~-----~~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~-----~~~~~~   76 (526)
T PF01602_consen    8 ELAKILNSFK-IDISKKKEALKKLIYLMMLGY-----DISFLFMEVIKLISSKDLELKRLGYLYLSLYL-----HEDPEL   76 (526)
T ss_dssp             HHHHHHHCSS-THHHHHHHHHHHHHHHHHTT--------GSTHHHHHCTCSSSSHHHHHHHHHHHHHHT-----TTSHHH
T ss_pred             HHHHHHhcCC-CCHHHHHHHHHHHHHHHHcCC-----CCchHHHHHHHHhCCCCHHHHHHHHHHHHHHh-----hcchhH
Confidence            4455555554 466778888777766544322     23344556777777666666555554443332     3333 3


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHH
Q 020587          162 LDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGID  241 (324)
Q Consensus       162 ~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~  241 (324)
                      +-.++..|.+-..+.|..++..|-++|..+...---..+++.+...+.|++|.||++++.++..+.+.. ++.+.   ..
T Consensus        77 ~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~-p~~~~---~~  152 (526)
T PF01602_consen   77 LILIINSLQKDLNSPNPYIRGLALRTLSNIRTPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKD-PDLVE---DE  152 (526)
T ss_dssp             HHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHC-HCCHH---GG
T ss_pred             HHHHHHHHHHhhcCCCHHHHHHHHhhhhhhcccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccC-HHHHH---HH
Confidence            566777788778888999999998888887754444557778889999999999999999999999873 32121   12


Q ss_pred             HHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 020587          242 KLIQVAASQLSDQLPESREAARTLLLEL  269 (324)
Q Consensus       242 ~ll~~l~~~L~D~~pEvR~~AR~~l~~L  269 (324)
                       +++.+.+++.|.++.|+.+|=.++..+
T Consensus       153 -~~~~l~~lL~d~~~~V~~~a~~~l~~i  179 (526)
T PF01602_consen  153 -LIPKLKQLLSDKDPSVVSAALSLLSEI  179 (526)
T ss_dssp             -HHHHHHHHTTHSSHHHHHHHHHHHHHH
T ss_pred             -HHHHHhhhccCCcchhHHHHHHHHHHH
Confidence             799999999999999999998888766

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=97.42  E-value=0.0024  Score=57.89  Aligned_cols=139  Identities=15%  Similarity=0.105  Sum_probs=95.8

Q ss_pred             hcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhHHHH-HHH
Q 020587           90 GLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDPL-LVQ  168 (324)
Q Consensus        90 ~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d~l-l~~  168 (324)
                      .+.+..=.-...|+..+..|+.+-...+.+.++.+++.+++.+.+-...+...|..|+..|+...+     +...+ +..
T Consensus        61 ~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~-----~~~~~~~~~  135 (228)
T PF12348_consen   61 QLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCS-----YSPKILLEI  135 (228)
T ss_dssp             -S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS------H--HHHHHH
T ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC-----cHHHHHHHH
Confidence            334334445566666666766654444666788889999999999999999999999999998766     12233 555


Q ss_pred             HHHHhcCChHHHHHHHHHHHHHHHhhcC--------h---hhhHHHHhhhccCCCHHHHHHHHHHHHhhccccccc
Q 020587          169 LLLKSSQDKRFVCEAAEKALVAMTTWVS--------P---ILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVE  233 (324)
Q Consensus       169 LL~Ka~~sk~FI~e~A~~AL~amv~~vs--------~---~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~  233 (324)
                      +..-..+.+..+|..+-..|..++...+        .   ..+++.|..++.+.++.||..+-.++..+...+|..
T Consensus       136 l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~  211 (228)
T PF12348_consen  136 LSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPER  211 (228)
T ss_dssp             HHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HH
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHh
Confidence            5556678899999999999999998887        1   236677889999999999999999998887777654

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>PRK09687 putative lyase; Provisional

Probab=97.42  E-value=0.0057  Score=58.24  Aligned_cols=118  Identities=14%  Similarity=0.029  Sum_probs=73.9

Q ss_pred             CCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHHH
Q 020587           92 DSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLL  171 (324)
Q Consensus        92 ~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d~ll~~LL~  171 (324)
                      +++||..|..|...|-.+...++..    ...++..+...+.|....|-+.|+.+++.+    +      -+..++.|+.
T Consensus       101 ~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~----~------~~~ai~~L~~  166 (280)
T PRK09687        101 EDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVI----N------DEAAIPLLIN  166 (280)
T ss_pred             cCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhcc----C------CHHHHHHHHH
Confidence            4455555555555554443222110    122334455556666666777777666543    1      1346677777


Q ss_pred             HhcCChHHHHHHHHHHHHHHHhhcChhhhHHHHhhhccCCCHHHHHHHHHHHHh
Q 020587          172 KSSQDKRFVCEAAEKALVAMTTWVSPILLLPKLQPYLKNRNPRIRAKASMCFSR  225 (324)
Q Consensus       172 Ka~~sk~FI~e~A~~AL~amv~~vs~~~ll~~L~~~~~hKNp~VR~~aa~~L~~  225 (324)
                      .+.+.+..||..|-.+|..|  .......++.|...+++.|+.||..++..|..
T Consensus       167 ~L~d~~~~VR~~A~~aLg~~--~~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~  218 (280)
T PRK09687        167 LLKDPNGDVRNWAAFALNSN--KYDNPDIREAFVAMLQDKNEEIRIEAIIGLAL  218 (280)
T ss_pred             HhcCCCHHHHHHHHHHHhcC--CCCCHHHHHHHHHHhcCCChHHHHHHHHHHHc
Confidence            77777888998888888887  33345677788888888899998888877753

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.27  E-value=0.0059  Score=62.77  Aligned_cols=152  Identities=21%  Similarity=0.188  Sum_probs=123.6

Q ss_pred             hhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHHHHhcCChHHHHHHHHHH---HHHHHhh--
Q 020587          120 ILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLLKSSQDKRFVCEAAEKA---LVAMTTW--  194 (324)
Q Consensus       120 ~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d~ll~~LL~Ka~~sk~FI~e~A~~A---L~amv~~--  194 (324)
                      .+..+++.++.+..+.-++|---||..+-.+++..+.++-.+++.+..+|=+-.+++..-++..|+--   +..|+..  
T Consensus        81 Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikdIVte~~  160 (675)
T KOG0212|consen   81 YLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGAELLDRLIKDIVTESA  160 (675)
T ss_pred             HHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHHHHHHHHHHHhccccc
Confidence            57889999999999999999999999999999999999999999999999999999877777666532   3333322  


Q ss_pred             --cChhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHH-HHH
Q 020587          195 --VSPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLE-LQS  271 (324)
Q Consensus       195 --vs~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~-L~~  271 (324)
                        -+-+.++|.|...+...||-.|.....|+..+-..-+-+ +..+ ++.+++-+.++|+|.++|+|...--++.. |++
T Consensus       161 ~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~-m~~y-l~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~e  238 (675)
T KOG0212|consen  161 STFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLE-MISY-LPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAE  238 (675)
T ss_pred             cccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHH-HHhc-chHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH
Confidence              234568889999998999999999999999776643322 4445 89999999999999999999888876654 344


Q ss_pred             Hh
Q 020587          272 VY  273 (324)
Q Consensus       272 ~~  273 (324)
                      +-
T Consensus       239 I~  240 (675)
T KOG0212|consen  239 IR  240 (675)
T ss_pred             Hh
Confidence            43

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.26  E-value=0.012  Score=61.79  Aligned_cols=185  Identities=18%  Similarity=0.159  Sum_probs=124.2

Q ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHH--hhhhHHhh
Q 020587           84 VKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSA--YNDRMIDL  161 (324)
Q Consensus        84 L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~--L~~~m~~~  161 (324)
                      +..+|..-.++|=+.|-.-...+--|...+|+-+.+.|+.|+.-++....+..=.|+-+||...-.+++.  .+.-+.||
T Consensus       217 le~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~  296 (885)
T KOG2023|consen  217 LEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPY  296 (885)
T ss_pred             HHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHH
Confidence            4444554566666666555555566677899999999999999999999999999999999877777665  34555666


Q ss_pred             HHHHHHHHHHH---------------------------------------------------------------------
Q 020587          162 LDPLLVQLLLK---------------------------------------------------------------------  172 (324)
Q Consensus       162 ~d~ll~~LL~K---------------------------------------------------------------------  172 (324)
                      ++.++|.||..                                                                     
T Consensus       297 l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSA  376 (885)
T KOG2023|consen  297 LDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSA  376 (885)
T ss_pred             HHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccH
Confidence            66666666522                                                                     


Q ss_pred             -------------------------hcCChHHHHHHHHHHHHHHHhhcC------hhhhHHHHhhhccCCCHHHHHHHHH
Q 020587          173 -------------------------SSQDKRFVCEAAEKALVAMTTWVS------PILLLPKLQPYLKNRNPRIRAKASM  221 (324)
Q Consensus       173 -------------------------a~~sk~FI~e~A~~AL~amv~~vs------~~~ll~~L~~~~~hKNp~VR~~aa~  221 (324)
                                               .+...=+++|++--||.+|.+.|-      .+.++|.|.+.+.+|.|.||+-+|=
T Consensus       377 AaLDVLanvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCW  456 (885)
T KOG2023|consen  377 AALDVLANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCW  456 (885)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeee
Confidence                                     222234677787788888777652      2347777788888888888887654


Q ss_pred             HHHhhcccccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 020587          222 CFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLEL  269 (324)
Q Consensus       222 ~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L  269 (324)
                      -|++.-.-.-... ...-...++.-+.+.+-|++-.|.++|=.++.+|
T Consensus       457 TLsRys~wv~~~~-~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtl  503 (885)
T KOG2023|consen  457 TLSRYSKWVVQDS-RDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATL  503 (885)
T ss_pred             eHhhhhhhHhcCC-hHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence            4443322111111 1111556666667777788888888887776433

>PTZ00429 beta-adaptin; Provisional

Probab=97.24  E-value=0.01  Score=63.72  Aligned_cols=176  Identities=13%  Similarity=0.083  Sum_probs=116.0

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhh-
Q 020587           83 SVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDL-  161 (324)
Q Consensus        83 ~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~-  161 (324)
                      .+.++.+.|.+.|=.++.+|++.+-.+-...-     ....+...|++.+.+-.-.+=|-....+..+    . ...|+ 
T Consensus        33 e~~ELr~~L~s~~~~~kk~alKkvIa~mt~G~-----DvS~LF~dVvk~~~S~d~elKKLvYLYL~~y----a-~~~pel  102 (746)
T PTZ00429         33 EGAELQNDLNGTDSYRKKAAVKRIIANMTMGR-----DVSYLFVDVVKLAPSTDLELKKLVYLYVLST----A-RLQPEK  102 (746)
T ss_pred             hHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC-----CchHHHHHHHHHhCCCCHHHHHHHHHHHHHH----c-ccChHH
Confidence            34556666777766677888876665433221     2223334455566655555555444333322    2 23344 


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHH
Q 020587          162 LDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGID  241 (324)
Q Consensus       162 ~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~  241 (324)
                      +-..+..|.+=+.+.|.+||--|-++|..|-..--...+++.|..++.|++|-||++++.++.++...- ++.+.   ..
T Consensus       103 alLaINtl~KDl~d~Np~IRaLALRtLs~Ir~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~-pelv~---~~  178 (746)
T PTZ00429        103 ALLAVNTFLQDTTNSSPVVRALAVRTMMCIRVSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDD-MQLFY---QQ  178 (746)
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhC-ccccc---cc
Confidence            456677787778889999999988887765444333446667889999999999999999999987753 33222   22


Q ss_pred             HHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Q 020587          242 KLIQVAASQLSDQLPESREAARTLLLELQSV  272 (324)
Q Consensus       242 ~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~  272 (324)
                      .+++.+.++|.|.+|.|...|-.++..+...
T Consensus       179 ~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~  209 (746)
T PTZ00429        179 DFKKDLVELLNDNNPVVASNAAAIVCEVNDY  209 (746)
T ss_pred             chHHHHHHHhcCCCccHHHHHHHHHHHHHHh
Confidence            3556677789999999999998877766543

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=97.22  E-value=0.0088  Score=65.57  Aligned_cols=156  Identities=20%  Similarity=0.175  Sum_probs=92.1

Q ss_pred             HHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHH------------------Hhhh----hHHHHHHHHccCcchHHHHHH
Q 020587           86 TLVAGLDSKDWVVVCEALNNVRRLSIFHKEAML------------------DILG----DVIPLVVKSLKNPRSAVCKTA  143 (324)
Q Consensus        86 ~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~------------------~~L~----~iv~~l~~~vksLRS~Vsk~A  143 (324)
                      .++..|.++||..|..|+..|.++-.  ++.+.                  ..++    ..+..+...++|.-..|-..|
T Consensus       718 ~l~~~L~D~d~~VR~~Av~aL~~~~~--~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~D~d~~VR~aA  795 (897)
T PRK13800        718 LFAAALGDPDHRVRIEAVRALVSVDD--VESVAGAATDENREVRIAVAKGLATLGAGGAPAGDAVRALTGDPDPLVRAAA  795 (897)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHhcccC--cHHHHHHhcCCCHHHHHHHHHHHHHhccccchhHHHHHHHhcCCCHHHHHHH
Confidence            34567789999999999988887521  11110                  0111    012344555555555555555


Q ss_pred             HHHHHHHHHHhhhhHHhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhhhHHHHhhhccCCCHHHHHHHHHHH
Q 020587          144 IMTAADIFSAYNDRMIDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPILLLPKLQPYLKNRNPRIRAKASMCF  223 (324)
Q Consensus       144 ~~tl~dLf~~L~~~m~~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~ll~~L~~~~~hKNp~VR~~aa~~L  223 (324)
                      +.+++.+..       +  +.+...|+.-..+..-.||..|-.+|..    +.....++.|...+++.++.||..++..|
T Consensus       796 ~~aLg~~g~-------~--~~~~~~l~~aL~d~d~~VR~~Aa~aL~~----l~~~~a~~~L~~~L~D~~~~VR~~A~~aL  862 (897)
T PRK13800        796 LAALAELGC-------P--PDDVAAATAALRASAWQVRQGAARALAG----AAADVAVPALVEALTDPHLDVRKAAVLAL  862 (897)
T ss_pred             HHHHHhcCC-------c--chhHHHHHHHhcCCChHHHHHHHHHHHh----ccccchHHHHHHHhcCCCHHHHHHHHHHH
Confidence            555444410       0  1122334444556666777777777754    34455667777777777777777777777


Q ss_pred             HhhcccccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHH
Q 020587          224 SRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLL  267 (324)
Q Consensus       224 ~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~  267 (324)
                      ..+    .       +-+...+.+.+.++|.+++||..|.++|.
T Consensus       863 ~~~----~-------~~~~a~~~L~~al~D~d~~Vr~~A~~aL~  895 (897)
T PRK13800        863 TRW----P-------GDPAARDALTTALTDSDADVRAYARRALA  895 (897)
T ss_pred             hcc----C-------CCHHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence            653    0       12334556667778888888888887764

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=97.12  E-value=0.0058  Score=46.65  Aligned_cols=85  Identities=27%  Similarity=0.257  Sum_probs=66.1

Q ss_pred             HHHHHHHh-cCChHHHHHHHHHHHHHHHhhcChhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHHHH
Q 020587          166 LVQLLLKS-SQDKRFVCEAAEKALVAMTTWVSPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLI  244 (324)
Q Consensus       166 l~~LL~Ka-~~sk~FI~e~A~~AL~amv~~vs~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll  244 (324)
                      ++.|++.+ .+.+..++..+-.+|.    .....++++.|...++|.|+.||..++..|..+    |        .+..+
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~----~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i----~--------~~~~~   64 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALG----ELGDPEAIPALIELLKDEDPMVRRAAARALGRI----G--------DPEAI   64 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHH----CCTHHHHHHHHHHHHTSSSHHHHHHHHHHHHCC----H--------HHHTH
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHH----HcCCHhHHHHHHHHHcCCCHHHHHHHHHHHHHh----C--------CHHHH
Confidence            46777777 6778999988888777    556778999999999999999999999988754    2        35566


Q ss_pred             HHHHHhccC-CCHHHHHHHHHHH
Q 020587          245 QVAASQLSD-QLPESREAARTLL  266 (324)
Q Consensus       245 ~~l~~~L~D-~~pEvR~~AR~~l  266 (324)
                      +.+.+.+.| .+..+|..|-.++
T Consensus        65 ~~L~~~l~~~~~~~vr~~a~~aL   87 (88)
T PF13646_consen   65 PALIKLLQDDDDEVVREAAAEAL   87 (88)
T ss_dssp             HHHHHHHTC-SSHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCcHHHHHHHHhhc
Confidence            677776655 5667798887665

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=97.07  E-value=0.018  Score=67.52  Aligned_cols=191  Identities=16%  Similarity=0.128  Sum_probs=140.5

Q ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHHHHhHc-HHH---------------HHH------h----------------hhhHH
Q 020587           84 VKTLVAGLDSKDWVVVCEALNNVRRLSIFH-KEA---------------MLD------I----------------LGDVI  125 (324)
Q Consensus        84 L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h-~~~---------------l~~------~----------------L~~iv  125 (324)
                      +..+++.|++.+++.+.+++..|-.|+... ++.               ...      .                -...+
T Consensus       532 IppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL  611 (2102)
T PLN03200        532 VPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDAL  611 (2102)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccH
Confidence            445667788889999999988888885321 110               000      0                01246


Q ss_pred             HHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHh-hHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhh-----
Q 020587          126 PLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMID-LLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPIL-----  199 (324)
Q Consensus       126 ~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~-~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~-----  199 (324)
                      +.+...+++....+-+.|+.+++.+|..-.+.... .....+++|+......+.=++.++..||..+........     
T Consensus       612 ~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v  691 (2102)
T PLN03200        612 RTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYA  691 (2102)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence            67888888888999999999999999854433222 235678888888877777789999999999987665442     


Q ss_pred             ---hHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhc
Q 020587          200 ---LLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSVYEKS  276 (324)
Q Consensus       200 ---ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~~~  276 (324)
                         +++.|...+++.+..++..++..|.+++..-..  .........++.+.++|.++++++|+.|-.++..|-..++..
T Consensus       692 ~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~--~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~  769 (2102)
T PLN03200        692 AEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEV--AAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVD  769 (2102)
T ss_pred             HcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchH--HHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChh
Confidence               455678888999999999999999999986322  222233445788888999999999999999998888777633

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.87  E-value=0.081  Score=58.53  Aligned_cols=186  Identities=18%  Similarity=0.163  Sum_probs=123.6

Q ss_pred             HhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHH--Hhhh-hHHhhHHH
Q 020587           88 VAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFS--AYND-RMIDLLDP  164 (324)
Q Consensus        88 l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~--~L~~-~m~~~~d~  164 (324)
                      ++..++..--.+...|..|-+|..-|+......+...++.++-.+|.-.-.--++|-.|+-.|..  ..-. .=+| ...
T Consensus       703 ~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~-~~~  781 (1176)
T KOG1248|consen  703 LDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEP-ASA  781 (1176)
T ss_pred             HHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccc-hHH
Confidence            33334444455556666666666666633334455555666666677777777888888888873  2211 1112 233


Q ss_pred             HHHHHHHH-----hcCChHHHHHHHHHHHHHHHh----hcCh---hhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccc
Q 020587          165 LLVQLLLK-----SSQDKRFVCEAAEKALVAMTT----WVSP---ILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGV  232 (324)
Q Consensus       165 ll~~LL~K-----a~~sk~FI~e~A~~AL~amv~----~vs~---~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~  232 (324)
                      .+...+..     +|+....++-+ -.|+..++.    .++.   .+++..+..++...++.||..+..++..++..+..
T Consensus       782 ~lnefl~~Isagl~gd~~~~~as~-Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe  860 (1176)
T KOG1248|consen  782 ILNEFLSIISAGLVGDSTRVVASD-IVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPE  860 (1176)
T ss_pred             HHHHHHHHHHhhhcccHHHHHHHH-HHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCH
Confidence            33333332     34444444433 444444443    2333   34666678999999999999999999999999977


Q ss_pred             cchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhc
Q 020587          233 EGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSVYEKS  276 (324)
Q Consensus       233 ~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~~~  276 (324)
                      ..+..+ ++.|++.+..++.|..-.+|...|.++..|-+.|+-.
T Consensus       861 ~~l~~~-~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg~~  903 (1176)
T KOG1248|consen  861 ECLSPH-LEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFGAE  903 (1176)
T ss_pred             HHHhhh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCHH
Confidence            755545 9999999999999999999999999999999888743

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=96.81  E-value=0.012  Score=52.04  Aligned_cols=89  Identities=25%  Similarity=0.268  Sum_probs=69.6

Q ss_pred             HHHHHHHHHHHHHHhhcCh--hhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccCCCH
Q 020587          179 FVCEAAEKALVAMTTWVSP--ILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLP  256 (324)
Q Consensus       179 FI~e~A~~AL~amv~~vs~--~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~p  256 (324)
                      .||.-+-.++..++..-+.  .+.++.|...+.+.+|.||..+..+|..++.. |-   ... ...++..+..++.|.++
T Consensus         3 ~vR~n~i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~-d~---ik~-k~~l~~~~l~~l~D~~~   77 (178)
T PF12717_consen    3 SVRNNAIIALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILE-DM---IKV-KGQLFSRILKLLVDENP   77 (178)
T ss_pred             HHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc-Cc---eee-hhhhhHHHHHHHcCCCH
Confidence            4666777777777766554  45788999999999999999999999999875 22   111 35565677778899999


Q ss_pred             HHHHHHHHHHHHHHHH
Q 020587          257 ESREAARTLLLELQSV  272 (324)
Q Consensus       257 EvR~~AR~~l~~L~~~  272 (324)
                      ++|..|+..+..+...
T Consensus        78 ~Ir~~A~~~~~e~~~~   93 (178)
T PF12717_consen   78 EIRSLARSFFSELLKK   93 (178)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999999866665

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=96.74  E-value=0.042  Score=60.31  Aligned_cols=129  Identities=20%  Similarity=0.163  Sum_probs=77.4

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHHhHc--HHHHH---------------Hhhhh----HHHHHHHHccCcchHHHH
Q 020587           83 SVKTLVAGLDSKDWVVVCEALNNVRRLSIFH--KEAML---------------DILGD----VIPLVVKSLKNPRSAVCK  141 (324)
Q Consensus        83 ~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h--~~~l~---------------~~L~~----iv~~l~~~vksLRS~Vsk  141 (324)
                      .+..+...|+++||..|..|+..|.++....  ...+.               ..|..    -...+++.++|..-.|-+
T Consensus       653 ~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~~~l~~~L~D~d~~VR~  732 (897)
T PRK13800        653 FGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRDHLGSPDPVVRAAALDVLRALRAGDAALFAAALGDPDHRVRI  732 (897)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHHHhcCCCHHHHHHHHHHHHhhccCCHHHHHHHhcCCCHHHHH
Confidence            3567777888999999999999998874321  11111               11221    124567788898999999


Q ss_pred             HHHHHHHHHHHHhhhhHHhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhhhHHHHhhhccCCCHHHHHHHHH
Q 020587          142 TAIMTAADIFSAYNDRMIDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPILLLPKLQPYLKNRNPRIRAKASM  221 (324)
Q Consensus       142 ~A~~tl~dLf~~L~~~m~~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~ll~~L~~~~~hKNp~VR~~aa~  221 (324)
                      .|+.+++.+-    .         .+.|+..+.+.+..||..+..+|..+-..-  ...++.|...+++.++.||..++.
T Consensus       733 ~Av~aL~~~~----~---------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~--~~~~~~L~~ll~D~d~~VR~aA~~  797 (897)
T PRK13800        733 EAVRALVSVD----D---------VESVAGAATDENREVRIAVAKGLATLGAGG--APAGDAVRALTGDPDPLVRAAALA  797 (897)
T ss_pred             HHHHHHhccc----C---------cHHHHHHhcCCCHHHHHHHHHHHHHhcccc--chhHHHHHHHhcCCCHHHHHHHHH
Confidence            9999888641    0         122344455666666666666665543221  112444555556666666666666


Q ss_pred             HHHhh
Q 020587          222 CFSRS  226 (324)
Q Consensus       222 ~L~~~  226 (324)
                      .|..+
T Consensus       798 aLg~~  802 (897)
T PRK13800        798 ALAEL  802 (897)
T ss_pred             HHHhc
Confidence            55443

>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter

Probab=96.65  E-value=0.06  Score=48.39  Aligned_cols=122  Identities=13%  Similarity=0.151  Sum_probs=102.9

Q ss_pred             CHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhH-cHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHH---HHHh
Q 020587           79 DIDTSVKTLVAGLDSKDWVVVCEALNNVRRLSIF-HKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADI---FSAY  154 (324)
Q Consensus        79 dpe~~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~-h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dL---f~~L  154 (324)
                      |-.--|..++++|...+=--++=|.+-+..|..+ .++-+.+.+.+++..+...+..-...|...++.+++.|   ....
T Consensus        35 dy~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~v  114 (183)
T PF10274_consen   35 DYHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMV  114 (183)
T ss_pred             chhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhh
Confidence            3445688999999987777788888888888887 77788899999999999999999999999999999999   7778


Q ss_pred             hhhHHhhHHHHHHHHH----HH--hc-----CChHHHHHHHHHHHHHHHhhcChhhh
Q 020587          155 NDRMIDLLDPLLVQLL----LK--SS-----QDKRFVCEAAEKALVAMTTWVSPILL  200 (324)
Q Consensus       155 ~~~m~~~~d~ll~~LL----~K--a~-----~sk~FI~e~A~~AL~amv~~vs~~~l  200 (324)
                      |..+-||...+++.|=    ++  .|     ..++-+.+..+.+|..+-++..+.-.
T Consensus       115 G~aLvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~dA~  171 (183)
T PF10274_consen  115 GEALVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGPDAF  171 (183)
T ss_pred             hHHHHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcChhHH
Confidence            9999999999999886    22  12     24578899999999999999887643

The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=96.65  E-value=0.017  Score=45.75  Aligned_cols=104  Identities=21%  Similarity=0.194  Sum_probs=80.7

Q ss_pred             HHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhHH-HHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhh---
Q 020587          124 VIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLD-PLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPIL---  199 (324)
Q Consensus       124 iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d-~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~---  199 (324)
                      +++.+.+.+++....+-..|+.+++.++..........++ .+++.|+.-..+.+.-++..+-.+|..++.+.+...   
T Consensus         8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~   87 (120)
T cd00020           8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIV   87 (120)
T ss_pred             ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHH
Confidence            5666777778888899999999999998764333333343 677777777778889999999999999988764321   


Q ss_pred             ----hHHHHhhhccCCCHHHHHHHHHHHHhhc
Q 020587          200 ----LLPKLQPYLKNRNPRIRAKASMCFSRSV  227 (324)
Q Consensus       200 ----ll~~L~~~~~hKNp~VR~~aa~~L~~~v  227 (324)
                          +++.|...+.+.+..+|..++..|..++
T Consensus        88 ~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~  119 (120)
T cd00020          88 LEAGGVPKLVNLLDSSNEDIQKNATGALSNLA  119 (120)
T ss_pred             HHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence                4667788888889999999998888765

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>KOG2956 consensus CLIP-associating protein [General function prediction only]

Probab=96.65  E-value=0.056  Score=54.71  Aligned_cols=145  Identities=18%  Similarity=0.212  Sum_probs=102.1

Q ss_pred             HhhcCC-CCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhHHHHH
Q 020587           88 VAGLDS-KDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDPLL  166 (324)
Q Consensus        88 l~~L~s-~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d~ll  166 (324)
                      ++-|++ ++-..+..||..||.++.+.|..+...-.-.+-.++..-+|.--.|.+.|-.++..+...+-.  ..-+..+.
T Consensus       335 ~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P--~~~I~~i~  412 (516)
T KOG2956|consen  335 LEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLP--LQCIVNIS  412 (516)
T ss_pred             HHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCc--hhHHHHHh
Confidence            344444 566667778888888888888888766666677788888899999999998876665544321  12244555


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHHHHhhcChhhh-------HHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhc
Q 020587          167 VQLLLKSSQDKRFVCEAAEKALVAMTTWVSPILL-------LPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEY  238 (324)
Q Consensus       167 ~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~l-------l~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~  238 (324)
                      +.++.  .|..+  .-.+-+.+..|++.++-..+       .|.+..+..+-+..||..+..||..++.++|.+.+..+
T Consensus       413 ~~Ilt--~D~~~--~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~mePh  487 (516)
T KOG2956|consen  413 PLILT--ADEPR--AVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPH  487 (516)
T ss_pred             hHHhc--CcchH--HHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhH
Confidence            55555  44332  34556677778888876553       34455677899999999999999999999997656544

>PTZ00429 beta-adaptin; Provisional

Probab=96.62  E-value=0.17  Score=54.69  Aligned_cols=179  Identities=17%  Similarity=0.192  Sum_probs=105.8

Q ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHH--hh
Q 020587           84 VKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMI--DL  161 (324)
Q Consensus        84 L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~--~~  161 (324)
                      +..+...+.+.|=.-|.-||..+-++  ..|+    .++.++..|.+.+.+...-|-|+|++|+..||......+.  .+
T Consensus       107 INtl~KDl~d~Np~IRaLALRtLs~I--r~~~----i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~  180 (746)
T PTZ00429        107 VNTFLQDTTNSSPVVRALAVRTMMCI--RVSS----VLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDF  180 (746)
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHcC--CcHH----HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccch
Confidence            34555555555544444444433333  1122    2345666778888999999999999999999886553321  12


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhh-------------------------------------cCh-----hh
Q 020587          162 LDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTW-------------------------------------VSP-----IL  199 (324)
Q Consensus       162 ~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~-------------------------------------vs~-----~~  199 (324)
                      ++.    |.....|.+..|.-.|-.+|..+...                                     .+.     ..
T Consensus       181 ~~~----L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~~~  256 (746)
T PTZ00429        181 KKD----LVELLNDNNPVVASNAAAIVCEVNDYGSEKIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKESAET  256 (746)
T ss_pred             HHH----HHHHhcCCCccHHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHHHH
Confidence            222    22223344444444444444444322                                     111     13


Q ss_pred             hHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhh
Q 020587          200 LLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSVYE  274 (324)
Q Consensus       200 ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~  274 (324)
                      ++..+.+.++|.|+.|.-.+++++..+....... +...-..++...+.. |..+.||+|+.+-+.+..+...++
T Consensus       257 il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~-~~~~~~~rl~~pLv~-L~ss~~eiqyvaLr~I~~i~~~~P  329 (746)
T PTZ00429        257 LLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQE-LIERCTVRVNTALLT-LSRRDAETQYIVCKNIHALLVIFP  329 (746)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHH-HHHHHHHHHHHHHHH-hhCCCccHHHHHHHHHHHHHHHCH
Confidence            5566778889999999999999888777654322 222223344444443 356889999999988877766665

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=96.57  E-value=0.13  Score=55.38  Aligned_cols=169  Identities=14%  Similarity=0.104  Sum_probs=127.7

Q ss_pred             CHHHHHHHHHHHHHHHhHcH-HHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHHHHh
Q 020587           95 DWVVVCEALNNVRRLSIFHK-EAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLLKS  173 (324)
Q Consensus        95 dW~~r~eaL~~LRrLa~~h~-~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d~ll~~LL~Ka  173 (324)
                      .|.-+.+-+..+-.++..-. .++.+.+.+++   ..++.|.=..+-+.|..++..+...+|  -.=+...+++.+|...
T Consensus       492 ~wRvr~ail~~ip~la~q~~~~~~~~~~~~l~---~~~l~d~v~~Ir~~aa~~l~~l~~~~G--~~w~~~~~i~k~L~~~  566 (759)
T KOG0211|consen  492 LWRVRLAILEYIPQLALQLGVEFFDEKLAELL---RTWLPDHVYSIREAAARNLPALVETFG--SEWARLEEIPKLLAMD  566 (759)
T ss_pred             hHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHH---HhhhhhhHHHHHHHHHHHhHHHHHHhC--cchhHHHhhHHHHHHh
Confidence            59999888888888876443 45555555543   344555555666677777888989999  3445677889999999


Q ss_pred             cCChHHHHHHHHHHHHHHHhhc----ChhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHH
Q 020587          174 SQDKRFVCEAAEKALVAMTTWV----SPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAAS  249 (324)
Q Consensus       174 ~~sk~FI~e~A~~AL~amv~~v----s~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~  249 (324)
                      ++++--.|...-.++..++.-+    ....++|.+.....+.+|.||-.+|.+|..++..+.....    -+.+.+..-.
T Consensus       567 ~q~~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~----~~~v~pll~~  642 (759)
T KOG0211|consen  567 LQDNYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESVR----DEEVLPLLET  642 (759)
T ss_pred             cCcccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHH----HHHHHHHHHH
Confidence            9887777777777766655544    4456888889999999999999999999999998766533    4567777777


Q ss_pred             hccCCCHHHHHHHHHHHHHHHHH
Q 020587          250 QLSDQLPESREAARTLLLELQSV  272 (324)
Q Consensus       250 ~L~D~~pEvR~~AR~~l~~L~~~  272 (324)
                      +..|.+.++|+.|..++..+...
T Consensus       643 L~~d~~~dvr~~a~~a~~~i~l~  665 (759)
T KOG0211|consen  643 LSSDQELDVRYRAILAFGSIELS  665 (759)
T ss_pred             hccCcccchhHHHHHHHHHHHHH
Confidence            88899999999999998855543

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=96.56  E-value=0.079  Score=56.84  Aligned_cols=176  Identities=14%  Similarity=0.153  Sum_probs=111.0

Q ss_pred             HHHHHHhh-cCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhh
Q 020587           83 SVKTLVAG-LDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDL  161 (324)
Q Consensus        83 ~L~~~l~~-L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~  161 (324)
                      .+...-.+ |.|.+=.+|++|++.+=+--...-+     +..+..-|++.+. .|..=.|-=|-..-..+..+.+   ..
T Consensus        19 ~~~~~~sg~l~s~n~~~kidAmK~iIa~M~~G~d-----mssLf~dViK~~~-trd~ElKrL~ylYl~~yak~~P---~~   89 (757)
T COG5096          19 SVAALSSGRLESSNDYKKIDAMKKIIAQMSLGED-----MSSLFPDVIKNVA-TRDVELKRLLYLYLERYAKLKP---EL   89 (757)
T ss_pred             HHhhhccccccccChHHHHHHHHHHHHHHhcCCC-----hHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHhccCH---HH
Confidence            44445555 7788888899999866543332222     3333344445444 3443333333222222222222   34


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHH
Q 020587          162 LDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGID  241 (324)
Q Consensus       162 ~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~  241 (324)
                      +-..++.+++-+++.|.+||--|-++|..|=..-=-..+++-|..++.|+++.||+.++.++..+.+. +.+ +.   .+
T Consensus        90 ~lLavNti~kDl~d~N~~iR~~AlR~ls~l~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~l-d~~-l~---~~  164 (757)
T COG5096          90 ALLAVNTIQKDLQDPNEEIRGFALRTLSLLRVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRL-DKD-LY---HE  164 (757)
T ss_pred             HHHHHHHHHhhccCCCHHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhc-CHh-hh---hc
Confidence            55677778888999999999999988876433222233555678999999999999999999998874 232 22   23


Q ss_pred             H-HHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhh
Q 020587          242 K-LIQVAASQLSDQLPESREAARTLLLELQSVYEK  275 (324)
Q Consensus       242 ~-ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~~  275 (324)
                      . +......++.|.+|.|-..|-..|   +.++++
T Consensus       165 ~g~~~~l~~l~~D~dP~Vi~nAl~sl---~~i~~e  196 (757)
T COG5096         165 LGLIDILKELVADSDPIVIANALASL---AEIDPE  196 (757)
T ss_pred             ccHHHHHHHHhhCCCchHHHHHHHHH---HHhchh
Confidence            3 556667778899999987776665   455554

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.38  E-value=0.09  Score=59.52  Aligned_cols=185  Identities=19%  Similarity=0.210  Sum_probs=119.9

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHHhHcH---------HHHHH------h---------------------------
Q 020587           83 SVKTLVAGLDSKDWVVVCEALNNVRRLSIFHK---------EAMLD------I---------------------------  120 (324)
Q Consensus        83 ~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~---------~~l~~------~---------------------------  120 (324)
                      .+++++.+|.++.|..|.-+.--|+.|...||         ++...      .                           
T Consensus      1040 Il~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~ 1119 (1702)
T KOG0915|consen 1040 ILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVT 1119 (1702)
T ss_pred             HHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Confidence            35677777889999999999888888877543         11110      0                           


Q ss_pred             --------hhhHHHHHHH-HccCcchHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHHHHhcCC-hHH----------H
Q 020587          121 --------LGDVIPLVVK-SLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLLKSSQD-KRF----------V  180 (324)
Q Consensus       121 --------L~~iv~~l~~-~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d~ll~~LL~Ka~~s-k~F----------I  180 (324)
                              +.-+.+.++. .+-+-=..|.|-++.|+.||.+..|+.+.||+..+++.|+.-.+.= .+.          +
T Consensus      1120 ~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~ 1199 (1702)
T KOG0915|consen 1120 NGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINI 1199 (1702)
T ss_pred             CcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhhhhh
Confidence                    1111222211 2223344678899999999999999999999999999999776542 111          1


Q ss_pred             HHHHHHH--------------HHHHHhhcCh---hhhHHHHhhhcc-CCCHHHHHHHHHHHHhhcccccccchhhccHHH
Q 020587          181 CEAAEKA--------------LVAMTTWVSP---ILLLPKLQPYLK-NRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDK  242 (324)
Q Consensus       181 ~e~A~~A--------------L~amv~~vs~---~~ll~~L~~~~~-hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~  242 (324)
                      ..+|-.+              ++..+.++..   .+++|.+...++ .=+---|-.+|.++..++.|.|.+ +..+ ..+
T Consensus      1200 e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~e-mtP~-sgK 1277 (1702)
T KOG0915|consen 1200 ETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSE-MTPY-SGK 1277 (1702)
T ss_pred             HHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccc-cCcc-hhH
Confidence            1222222              2222333322   335555443332 233345667889999999998887 5555 789


Q ss_pred             HHHHHHHhccCCCHHHHHHHHHHHHHH
Q 020587          243 LIQVAASQLSDQLPESREAARTLLLEL  269 (324)
Q Consensus       243 ll~~l~~~L~D~~pEvR~~AR~~l~~L  269 (324)
                      ++.++-.++.|.|+-+|.+=-.++..|
T Consensus      1278 ll~al~~g~~dRNesv~kafAsAmG~L 1304 (1702)
T KOG0915|consen 1278 LLRALFPGAKDRNESVRKAFASAMGYL 1304 (1702)
T ss_pred             HHHHHhhccccccHHHHHHHHHHHHHH
Confidence            999999999999999988765555443

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=96.35  E-value=0.35  Score=57.17  Aligned_cols=195  Identities=14%  Similarity=0.081  Sum_probs=143.3

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHH-hhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHH-h
Q 020587           83 SVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLD-ILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMI-D  160 (324)
Q Consensus        83 ~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~-~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~-~  160 (324)
                      .+..+.+.|++++=..+.+|...|-.++..+++.... ...+.++.++..+++-...+.|+|+.+++.||......-. .
T Consensus       610 gL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~  689 (2102)
T PLN03200        610 ALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVS  689 (2102)
T ss_pred             cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHH
Confidence            3556666667777677888888888888777765543 2456788899999999999999999999999985543322 2


Q ss_pred             hHH-HHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcCh------hhhHHHHhhhccCCCHHHHHHHHHHHHhhccccccc
Q 020587          161 LLD-PLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSP------ILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVE  233 (324)
Q Consensus       161 ~~d-~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~------~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~  233 (324)
                      .++ .++++|+..+...+.-+.+.|-.||..++.+...      ...++.|...+++.++.+|..++..|..++......
T Consensus       690 ~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~  769 (2102)
T PLN03200        690 YAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVD  769 (2102)
T ss_pred             HHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChh
Confidence            233 4788898888877788889999999988876633      235678889999999999999999999999987655


Q ss_pred             chh-hc-cHHHHHHHHHHhccCCCHHHHHH--HHHHHHHHHHHhhhcC
Q 020587          234 GIK-EY-GIDKLIQVAASQLSDQLPESREA--ARTLLLELQSVYEKSH  277 (324)
Q Consensus       234 ~i~-~~-~~~~ll~~l~~~L~D~~pEvR~~--AR~~l~~L~~~~~~~a  277 (324)
                      ... .+ ...-.+..+..+|+-.+.|.-..  |-..+..|-+.-+...
T Consensus       770 ~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~~~~~~  817 (2102)
T PLN03200        770 DVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALALLARTKGGAN  817 (2102)
T ss_pred             HHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHHhhcccCC
Confidence            422 22 34445666777887777777666  6666665655433333

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=96.33  E-value=0.34  Score=42.73  Aligned_cols=128  Identities=18%  Similarity=0.190  Sum_probs=95.3

Q ss_pred             CHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHHHHhc
Q 020587           95 DWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLLKSS  174 (324)
Q Consensus        95 dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d~ll~~LL~Ka~  174 (324)
                      |+.-|..++..+=-|+..||.++.+.    ++.+.+.++|.-..|=++|+.++..|..   .+|...-+.++..++....
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~~~ve~~----~~~l~~~L~D~~~~VR~~al~~Ls~Li~---~d~ik~k~~l~~~~l~~l~   73 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYPNLVEPY----LPNLYKCLRDEDPLVRKTALLVLSHLIL---EDMIKVKGQLFSRILKLLV   73 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCcHHHHhH----HHHHHHHHCCCCHHHHHHHHHHHHHHHH---cCceeehhhhhHHHHHHHc
Confidence            45678888888889999999877654    4556788899999999999999999875   4566666777777888889


Q ss_pred             CChHHHHHHHHHHHHHHHhhcChhh---hHHHHhhhc----c-----CCCHHHHHHHHHHHHhhccc
Q 020587          175 QDKRFVCEAAEKALVAMTTWVSPIL---LLPKLQPYL----K-----NRNPRIRAKASMCFSRSVPR  229 (324)
Q Consensus       175 ~sk~FI~e~A~~AL~amv~~vs~~~---ll~~L~~~~----~-----hKNp~VR~~aa~~L~~~v~~  229 (324)
                      |++.-|++.|..++..+...-.+..   .++.+...+    +     ..+..-|.....++...+.+
T Consensus        74 D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~~  140 (178)
T PF12717_consen   74 DENPEIRSLARSFFSELLKKRNPNIIYNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFIDK  140 (178)
T ss_pred             CCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcCc
Confidence            9999999999999999888855544   333322222    2     24566677777777766664

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=96.30  E-value=0.043  Score=58.34  Aligned_cols=177  Identities=17%  Similarity=0.150  Sum_probs=137.3

Q ss_pred             HHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHH-hhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhHHH
Q 020587           86 TLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLD-ILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDP  164 (324)
Q Consensus        86 ~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~-~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d~  164 (324)
                      .+.-.|.+..=+.+..+++.+-+++...|+.+.. -.=.|+-.++..+++-+-.+=|+|..|+|.|++..|.+      .
T Consensus       887 rltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaIGPq------d  960 (1172)
T KOG0213|consen  887 RLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAIGPQ------D  960 (1172)
T ss_pred             cchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCHH------H
Confidence            3334445555555777888889999988876642 23345667788888888889999999999999999975      5


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHHHH
Q 020587          165 LLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLI  244 (324)
Q Consensus       165 ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll  244 (324)
                      ++..||+-....-+-.|.-...|+..+.+.|.|-.++|.|..-...-+..|...+.+.+.-.++.+|.-+ +.+ .-.+.
T Consensus       961 VLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtPe~nVQnGVLkalsf~Feyigems-kdY-iyav~ 1038 (1172)
T KOG0213|consen  961 VLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMS-KDY-IYAVT 1038 (1172)
T ss_pred             HHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHh-hhH-HHHhh
Confidence            7788887765555666666677777888999999999998877778888899888888888888877642 223 55677


Q ss_pred             HHHHHhccCCCHHHHHHHHHHHHHHH
Q 020587          245 QVAASQLSDQLPESREAARTLLLELQ  270 (324)
Q Consensus       245 ~~l~~~L~D~~pEvR~~AR~~l~~L~  270 (324)
                      +.+...|.|.++--|+.|-.++.+|.
T Consensus      1039 PlleDAlmDrD~vhRqta~~~I~Hl~ 1064 (1172)
T KOG0213|consen 1039 PLLEDALMDRDLVHRQTAMNVIKHLA 1064 (1172)
T ss_pred             HHHHHhhccccHHHHHHHHHHHHHHh
Confidence            88888899999999999998887664

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.19  E-value=0.33  Score=53.97  Aligned_cols=182  Identities=14%  Similarity=0.121  Sum_probs=140.0

Q ss_pred             CHHHHHHHHHHHHHHHhH--cHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHHHH
Q 020587           95 DWVVVCEALNNVRRLSIF--HKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLLK  172 (324)
Q Consensus        95 dW~~r~eaL~~LRrLa~~--h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d~ll~~LL~K  172 (324)
                      +=..+..+...|+.+...  ...+....+.+|...+.+.+.+.-+..-+.+|.|+.-|++.+......++..+++-++.-
T Consensus       667 ~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~  746 (1176)
T KOG1248|consen  667 STKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILS  746 (1176)
T ss_pred             cHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHh
Confidence            334455666777777655  223445667778888899999999999999999999999999988889998888888888


Q ss_pred             hcCChHHHHHHHHHHHHHHH--hhcC----------hhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccH
Q 020587          173 SSQDKRFVCEAAEKALVAMT--TWVS----------PILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGI  240 (324)
Q Consensus       173 a~~sk~FI~e~A~~AL~amv--~~vs----------~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~  240 (324)
                      ..+-+.--|..|-.+|..|.  +...          -...+..|..++-...+.+++..-..+..++...... +-.--+
T Consensus       747 ~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~-ld~~~l  825 (1176)
T KOG1248|consen  747 LKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNI-LDDETL  825 (1176)
T ss_pred             cccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhcc-ccHHHH
Confidence            88888888999999999888  3211          1235556778887888888888655556666554322 222238


Q ss_pred             HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhcC
Q 020587          241 DKLIQVAASQLSDQLPESREAARTLLLELQSVYEKSH  277 (324)
Q Consensus       241 ~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~~~a  277 (324)
                      ..+++.+.-+|...++++|.+|-..+.++...|++.-
T Consensus       826 ~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~  862 (1176)
T KOG1248|consen  826 EKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEEC  862 (1176)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHH
Confidence            9999999999999999999999999998888887654

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=96.06  E-value=0.14  Score=55.87  Aligned_cols=179  Identities=18%  Similarity=0.195  Sum_probs=117.2

Q ss_pred             CHHHHHHHHHHHHHHHhHc-HHHHHHhhhhHHHHHHHHccCcchHHHHHHHH----------------------------
Q 020587           95 DWVVVCEALNNVRRLSIFH-KEAMLDILGDVIPLVVKSLKNPRSAVCKTAIM----------------------------  145 (324)
Q Consensus        95 dW~~r~eaL~~LRrLa~~h-~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~----------------------------  145 (324)
                      -=..++++|-.+..+...| |+.+-+.+..+.+.+..++.++==+|+-+|+.                            
T Consensus       491 ss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~  570 (1233)
T KOG1824|consen  491 SSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMY  570 (1233)
T ss_pred             hHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHH
Confidence            3566888888888876644 55555555545555555555554445544444                            


Q ss_pred             ----------------------HHHHHHHHhhhhHHhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhc---C----
Q 020587          146 ----------------------TAADIFSAYNDRMIDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWV---S----  196 (324)
Q Consensus       146 ----------------------tl~dLf~~L~~~m~~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~v---s----  196 (324)
                                            |+|.+...||+.+..++..+++.|++|.++  ..-|-.|-+|+.-|+.+.   +    
T Consensus       571 ~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~n--EiTRl~AvkAlt~Ia~S~l~i~l~~~  648 (1233)
T KOG1824|consen  571 DCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLERLGN--EITRLTAVKALTLIAMSPLDIDLSPV  648 (1233)
T ss_pred             HHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhc--hhHHHHHHHHHHHHHhccceeehhhh
Confidence                                  445555555544455566777777777776  455666777776666543   2    


Q ss_pred             hhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhc
Q 020587          197 PILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSVYEKS  276 (324)
Q Consensus       197 ~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~~~  276 (324)
                      ...+++.|..++..-+-..|-.+...+..+++..+.. +.....+.++..+..++++.+--+-+.|-.++..+...++..
T Consensus       649 l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~-~~~~~~e~vL~el~~Lisesdlhvt~~a~~~L~tl~~~~ps~  727 (1233)
T KOG1824|consen  649 LTEILPELASFLRKNQRALRLATLTALDKLVKNYSDS-IPAELLEAVLVELPPLISESDLHVTQLAVAFLTTLAIIQPSS  727 (1233)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcccHH
Confidence            2335555666665555567777777777777776443 333458888999999999999999999999998888777643

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=96.00  E-value=0.42  Score=52.25  Aligned_cols=187  Identities=17%  Similarity=0.171  Sum_probs=137.2

Q ss_pred             HHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHH-HHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhHHH
Q 020587           86 TLVAGLDSKDWVVVCEALNNVRRLSIFHKEAM-LDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDP  164 (324)
Q Consensus        86 ~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l-~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d~  164 (324)
                      .+++++.+.|=.-|+-|.+.|..=.....--+ ...-.++++.+++.+.|-+--|.-.|..|+|-|..-.+   +.+++.
T Consensus         9 ~LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvk---e~~le~   85 (1233)
T KOG1824|consen    9 NLLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVK---EDQLET   85 (1233)
T ss_pred             HHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhch---HHHHHH
Confidence            67888888777779999988764322222112 24567889999999999999999999999999996555   445666


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHHHHhhcCh-----------hhhHHHHhhhcc--CCCHHHHHHHHHHHHhhccccc
Q 020587          165 LLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSP-----------ILLLPKLQPYLK--NRNPRIRAKASMCFSRSVPRLG  231 (324)
Q Consensus       165 ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~-----------~~ll~~L~~~~~--hKNp~VR~~aa~~L~~~v~~~g  231 (324)
                      ++..|....-..|.-.|+-+.-+|.+|+.+++|           .+++|.+..+..  .-.-.|+..++..+...+.|.|
T Consensus        86 ~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g  165 (1233)
T KOG1824|consen   86 IVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFG  165 (1233)
T ss_pred             HHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhc
Confidence            666666665455777888899999999999987           234444443332  3344599999999999999988


Q ss_pred             ccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhcC
Q 020587          232 VEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSVYEKSH  277 (324)
Q Consensus       232 ~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~~~a  277 (324)
                      .= +..+ ...++.++.-.+...-.-+|+-|-.++..|....+...
T Consensus       166 ~l-l~~f-h~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~l  209 (1233)
T KOG1824|consen  166 TL-LPNF-HLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDL  209 (1233)
T ss_pred             cc-Ccch-HHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHH
Confidence            73 2233 67778888888888888889888888887776665554

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=95.92  E-value=0.079  Score=55.43  Aligned_cols=179  Identities=18%  Similarity=0.180  Sum_probs=138.4

Q ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHH-hhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhH
Q 020587           84 VKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLD-ILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLL  162 (324)
Q Consensus        84 L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~-~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~  162 (324)
                      +..+...|.++.=+....++..+-.++...|+.+.. -.-.|+-.++..+++-+-.+=|+|..|+|.+.+..|+.     
T Consensus       690 lP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGPq-----  764 (975)
T COG5181         690 LPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAIGPQ-----  764 (975)
T ss_pred             cccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCHH-----
Confidence            344445556666666777888888888887775432 23345667888888888999999999999999999965     


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHH
Q 020587          163 DPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDK  242 (324)
Q Consensus       163 d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~  242 (324)
                       .++..||+-....-+-.|.-...|+..+.++|.|-.++|.|..-...-+..|...+.+.+.-.++.+|... +.+ .-.
T Consensus       765 -dvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpfsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s-~dY-vy~  841 (975)
T COG5181         765 -DVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPFSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQAS-LDY-VYS  841 (975)
T ss_pred             -HHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCchhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHH-HHH-HHH
Confidence             57777887665555666666677788888999999999988777777888888888888888888887752 234 567


Q ss_pred             HHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 020587          243 LIQVAASQLSDQLPESREAARTLLLELQ  270 (324)
Q Consensus       243 ll~~l~~~L~D~~pEvR~~AR~~l~~L~  270 (324)
                      +.+.+...+.|.+|--|+.|-..+.+|.
T Consensus       842 itPlleDAltDrD~vhRqta~nvI~Hl~  869 (975)
T COG5181         842 ITPLLEDALTDRDPVHRQTAMNVIRHLV  869 (975)
T ss_pred             hhHHHHhhhcccchHHHHHHHHHHHHHh
Confidence            8888899999999999999998887664

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.86  E-value=0.17  Score=52.42  Aligned_cols=179  Identities=15%  Similarity=0.134  Sum_probs=139.2

Q ss_pred             HHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHH----HhhhhHHHHHHH-HccCcchHHHHHHHHHHHHHHHHhhhhHHh
Q 020587           86 TLVAGLDSKDWVVVCEALNNVRRLSIFHKEAML----DILGDVIPLVVK-SLKNPRSAVCKTAIMTAADIFSAYNDRMID  160 (324)
Q Consensus        86 ~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~----~~L~~iv~~l~~-~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~  160 (324)
                      .+..+|+++-+++|..|-..+.++.+.   ++.    .++++++..++. -+.++.+-.-|-+++.++...-+||.+-.+
T Consensus         4 ~i~r~ltdKlYekRKaaalelEk~Vk~---l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~   80 (675)
T KOG0212|consen    4 SIARGLTDKLYEKRKAAALELEKLVKD---LVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAG   80 (675)
T ss_pred             HhhhhhhhHHHHHHHHHHHHHHHHHHH---HHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHH
Confidence            456678888899999999999998773   222    457777764444 556777778889999999999999999999


Q ss_pred             hHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChh------hhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccc
Q 020587          161 LLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPI------LLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEG  234 (324)
Q Consensus       161 ~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~------~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~  234 (324)
                      |.+.++++.+...+|..--||--|..+|.-++.-+-..      .+...++.-...--+.||. .+.++.++++-+-.+.
T Consensus        81 Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~-~aeLLdRLikdIVte~  159 (675)
T KOG0212|consen   81 YLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRG-GAELLDRLIKDIVTES  159 (675)
T ss_pred             HHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCcccccc-HHHHHHHHHHHhcccc
Confidence            99999999999999999999999999999887765332      2334555555555555654 4688899888776665


Q ss_pred             hhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Q 020587          235 IKEYGIDKLIQVAASQLSDQLPESREAARTLLLE  268 (324)
Q Consensus       235 i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~  268 (324)
                      -..|.++.+++.+..-+.+-+|.+|.+--.=+..
T Consensus       160 ~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~  193 (675)
T KOG0212|consen  160 ASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYV  193 (675)
T ss_pred             ccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence            5567899999999999999999999986554443

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.84  E-value=0.06  Score=56.61  Aligned_cols=172  Identities=19%  Similarity=0.237  Sum_probs=120.4

Q ss_pred             CHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHHHHhc
Q 020587           95 DWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLLKSS  174 (324)
Q Consensus        95 dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d~ll~~LL~Ka~  174 (324)
                      ||.-|.=+-..|-=|+...++.+   |.-+.+.+.+.+.+-+=.|--.++.++|.|+++.-+.|-||+..++|-|+....
T Consensus       368 dWNLRkCSAAaLDVLanvf~~el---L~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~  444 (885)
T KOG2023|consen  368 DWNLRKCSAAALDVLANVFGDEL---LPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLD  444 (885)
T ss_pred             cccHhhccHHHHHHHHHhhHHHH---HHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhc
Confidence            59765433334444444444433   555667777788887877888899999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHHHHHhhc---Chhh-hHHH---HhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHHHHHHH
Q 020587          175 QDKRFVCEAAEKALVAMTTWV---SPIL-LLPK---LQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVA  247 (324)
Q Consensus       175 ~sk~FI~e~A~~AL~amv~~v---s~~~-ll~~---L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l  247 (324)
                      +.+..||.-...+|.---.++   ++.+ +.|.   |...+-++|..|...++..+..+-+.-|.+ +..+ ++.+++.+
T Consensus       445 DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~e-LVp~-l~~IL~~l  522 (885)
T KOG2023|consen  445 DKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEE-LVPY-LEYILDQL  522 (885)
T ss_pred             cCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccch-hHHH-HHHHHHHH
Confidence            999999999999988655554   3322 4443   445556899999999999999998888776 4444 55555555


Q ss_pred             HHhccCCCHHHHHHHHHHHHHHHHHhhhcCC
Q 020587          248 ASQLSDQLPESREAARTLLLELQSVYEKSHD  278 (324)
Q Consensus       248 ~~~L~D~~pEvR~~AR~~l~~L~~~~~~~a~  278 (324)
                      ....       -+|-|+=+..|....+--|+
T Consensus       523 ~~af-------~kYQ~KNLlILYDAIgtlAd  546 (885)
T KOG2023|consen  523 VFAF-------GKYQKKNLLILYDAIGTLAD  546 (885)
T ss_pred             HHHH-------HHHhhcceehHHHHHHHHHH
Confidence            4332       12444444445554444444

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=95.75  E-value=0.019  Score=40.51  Aligned_cols=53  Identities=23%  Similarity=0.163  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 020587          139 VCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAM  191 (324)
Q Consensus       139 Vsk~A~~tl~dLf~~L~~~m~~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~am  191 (324)
                      |=.+|+.++|.+....+..+.++.+.+++.|+..+.|++.-||..|-.||..|
T Consensus         3 vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    3 VRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             HHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            44689999999999999999999999999999999988889999999998643

...

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=95.68  E-value=0.032  Score=39.37  Aligned_cols=55  Identities=18%  Similarity=0.160  Sum_probs=50.5

Q ss_pred             HHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHH
Q 020587           96 WVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADI  150 (324)
Q Consensus        96 W~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dL  150 (324)
                      |..|..|+..|=+++...++.+.+.+.++++.+...++|..+.|-.+||.+++.|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            8889999999988888889999999999999999999999999999999988754

...

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=95.66  E-value=0.082  Score=40.16  Aligned_cols=84  Identities=26%  Similarity=0.259  Sum_probs=63.0

Q ss_pred             HHHHhhc-CCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhHH
Q 020587           85 KTLVAGL-DSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLD  163 (324)
Q Consensus        85 ~~~l~~L-~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d  163 (324)
                      ..+++.| ++++|..|..++..|.++  .++        ++++.+...+++....|.++|+.+++.+    |      -+
T Consensus         2 ~~L~~~l~~~~~~~vr~~a~~~L~~~--~~~--------~~~~~L~~~l~d~~~~vr~~a~~aL~~i----~------~~   61 (88)
T PF13646_consen    2 PALLQLLQNDPDPQVRAEAARALGEL--GDP--------EAIPALIELLKDEDPMVRRAAARALGRI----G------DP   61 (88)
T ss_dssp             HHHHHHHHTSSSHHHHHHHHHHHHCC--THH--------HHHHHHHHHHTSSSHHHHHHHHHHHHCC----H------HH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHc--CCH--------hHHHHHHHHHcCCCHHHHHHHHHHHHHh----C------CH
Confidence            4677778 788999999988877744  223        3456667777999999999999999987    2      24


Q ss_pred             HHHHHHHHHhcCC-hHHHHHHHHHHH
Q 020587          164 PLLVQLLLKSSQD-KRFVCEAAEKAL  188 (324)
Q Consensus       164 ~ll~~LL~Ka~~s-k~FI~e~A~~AL  188 (324)
                      ..++.|.+.+.++ ..+++..|..+|
T Consensus        62 ~~~~~L~~~l~~~~~~~vr~~a~~aL   87 (88)
T PF13646_consen   62 EAIPALIKLLQDDDDEVVREAAAEAL   87 (88)
T ss_dssp             HTHHHHHHHHTC-SSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCcHHHHHHHHhhc
Confidence            5677777777654 567799888887

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=95.42  E-value=0.74  Score=40.33  Aligned_cols=105  Identities=20%  Similarity=0.141  Sum_probs=75.6

Q ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHHHHhHc-HHHHHHhhhhHHHHHHHHccCcc-hHHHHHHHHHHHHHHHHhh--hh--
Q 020587           84 VKTLVAGLDSKDWVVVCEALNNVRRLSIFH-KEAMLDILGDVIPLVVKSLKNPR-SAVCKTAIMTAADIFSAYN--DR--  157 (324)
Q Consensus        84 L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h-~~~l~~~L~~iv~~l~~~vksLR-S~Vsk~A~~tl~dLf~~L~--~~--  157 (324)
                      ...+...|.|+++..|..|+..+.-++... ++.+...-...++.+.+.+++.. ..+-+.||.++.+||...+  .+  
T Consensus        27 ~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~l~  106 (165)
T PF08167_consen   27 VTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPTLT  106 (165)
T ss_pred             HHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCchH
Confidence            445666778999999999999999999987 78887777788888888777533 3566788999999998864  22  


Q ss_pred             ---HHhhHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 020587          158 ---MIDLLDPLLVQLLLKSSQDKRFVCEAAEKALVA  190 (324)
Q Consensus       158 ---m~~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~a  190 (324)
                         ..|.+..+++.|++...+  ..+.+.+-.+|..
T Consensus       107 Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~  140 (165)
T PF08167_consen  107 REIATPNLPKFIQSLLQLLQD--SSCPETALDALAT  140 (165)
T ss_pred             HHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHH
Confidence               246677788888777665  2333344444443

>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans)

Probab=95.41  E-value=0.88  Score=44.14  Aligned_cols=191  Identities=16%  Similarity=0.117  Sum_probs=132.6

Q ss_pred             HHHHHHhhcC-CCCHHHHHHHHHHHHHHHh-HcHHH-HHHhhhhHHHHHHHHcc-CcchHHHHHHHHHHHHHHHHhhh-h
Q 020587           83 SVKTLVAGLD-SKDWVVVCEALNNVRRLSI-FHKEA-MLDILGDVIPLVVKSLK-NPRSAVCKTAIMTAADIFSAYND-R  157 (324)
Q Consensus        83 ~L~~~l~~L~-s~dW~~r~eaL~~LRrLa~-~h~~~-l~~~L~~iv~~l~~~vk-sLRS~Vsk~A~~tl~dLf~~L~~-~  157 (324)
                      .+..++..-+ .++|.+-+..|.+|-+... .++.+ ..+.-..+...+.+++. .|=|.|=+-|+.+...+|+.+|. .
T Consensus        11 ~v~k~L~~Fe~~~EWAD~is~L~kL~k~lq~~~~~~~~IP~k~~v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~   90 (307)
T PF04118_consen   11 EVEKALKSFESSSEWADYISFLGKLLKALQNSNNQFPYIPHKLQVSKRLAQCLNPALPSGVHQKALEVYEYIFERIGPDG   90 (307)
T ss_pred             HHHHHHHHhhhhhhHHHHHHHHHHHHHHHhccCCCCceeCcHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHH
Confidence            4455555554 5699999999999999888 33322 22444556677888887 78899999999999999999873 3


Q ss_pred             HHhhHH-----------------------------------------HHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcC
Q 020587          158 MIDLLD-----------------------------------------PLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVS  196 (324)
Q Consensus       158 m~~~~d-----------------------------------------~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs  196 (324)
                      +..++.                                         .++..||--.-+.+.=+-+.+...|+.+...+.
T Consensus        91 L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~~L~p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~  170 (307)
T PF04118_consen   91 LAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGPALRPCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVG  170 (307)
T ss_pred             HHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcC
Confidence            432222                                         222223333333444455667777888888888


Q ss_pred             hhhhHHHHhhhccCCCHHHHHHHHHHHHhhccccc------cc----chhhccHHHHHHHHHHhccCCCHHHHHHHHHHH
Q 020587          197 PILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLG------VE----GIKEYGIDKLIQVAASQLSDQLPESREAARTLL  266 (324)
Q Consensus       197 ~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g------~~----~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l  266 (324)
                      .......++-.+- .||.+|..+..|+.+-+.+..      ..    .+.......++.++..+++|.+.=|+..   ++
T Consensus       171 ~~~F~~~lwl~ii-~sp~~Rl~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Llv~al~~~L~D~~iLVqR~---~L  246 (307)
T PF04118_consen  171 DKYFWQCLWLCII-TSPSRRLGALNYLLRRLPKFQNDELSLSSEEQEYCLGPDPGLLVRALCACLEDENILVQRG---FL  246 (307)
T ss_pred             hhHHHHHHHHHHh-cCcchhHHHHHHHHHhCCcccccccccchHHHHHhcCCCccHHHHHHHHHhCCchHHHHHH---HH
Confidence            8877777776663 788999999999999888866      11    1122257889999999999998887754   45


Q ss_pred             HHHHHHhhhcC
Q 020587          267 LELQSVYEKSH  277 (324)
Q Consensus       267 ~~L~~~~~~~a  277 (324)
                      -.|..+|+-..
T Consensus       247 DlLl~~~PL~s  257 (307)
T PF04118_consen  247 DLLLSHFPLDS  257 (307)
T ss_pred             HHHHHhCCCCC
Confidence            55567777544

DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.41  E-value=0.25  Score=52.96  Aligned_cols=165  Identities=19%  Similarity=0.188  Sum_probs=113.5

Q ss_pred             HHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhHHHH
Q 020587           86 TLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDPL  165 (324)
Q Consensus        86 ~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d~l  165 (324)
                      ++...|+|.+=..++||++.|-.+..+..+     ...+-+.|+|.+.+=++.|-|---     +|-.-.-+.+|.+-.+
T Consensus        39 dL~~lLdSnkd~~KleAmKRIia~iA~G~d-----vS~~Fp~VVKNVaskn~EVKkLVy-----vYLlrYAEeqpdLALL  108 (968)
T KOG1060|consen   39 DLKQLLDSNKDSLKLEAMKRIIALIAKGKD-----VSLLFPAVVKNVASKNIEVKKLVY-----VYLLRYAEEQPDLALL  108 (968)
T ss_pred             HHHHHHhccccHHHHHHHHHHHHHHhcCCc-----HHHHHHHHHHHhhccCHHHHHHHH-----HHHHHHhhcCCCceee
Confidence            455566787778899999998888665433     334445667777777777666422     2111112333443333


Q ss_pred             HHHHHHH-hcCChHHHHHHHHHHHHHHHhhcChhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHHHH
Q 020587          166 LVQLLLK-SSQDKRFVCEAAEKALVAMTTWVSPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLI  244 (324)
Q Consensus       166 l~~LL~K-a~~sk~FI~e~A~~AL~amv~~vs~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll  244 (324)
                      =-.-++| .+|.|+-||..|-++|..|=-.+=.+-++-++..+..+-+|.||..+|-.+..|-.. +++     .-+.|+
T Consensus       109 SIntfQk~L~DpN~LiRasALRvlSsIRvp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsL-d~e-----~k~qL~  182 (968)
T KOG1060|consen  109 SINTFQKALKDPNQLIRASALRVLSSIRVPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSL-DPE-----QKDQLE  182 (968)
T ss_pred             eHHHHHhhhcCCcHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcC-Chh-----hHHHHH
Confidence            2233444 689999999999999998766654555666788999999999999999888766542 332     235899


Q ss_pred             HHHHHhccCCCHHHHHHHHHHH
Q 020587          245 QVAASQLSDQLPESREAARTLL  266 (324)
Q Consensus       245 ~~l~~~L~D~~pEvR~~AR~~l  266 (324)
                      +.+.++|.|.+|-|--.|--+|
T Consensus       183 e~I~~LLaD~splVvgsAv~AF  204 (968)
T KOG1060|consen  183 EVIKKLLADRSPLVVGSAVMAF  204 (968)
T ss_pred             HHHHHHhcCCCCcchhHHHHHH
Confidence            9999999999998877766554

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.36  E-value=1.7  Score=46.71  Aligned_cols=195  Identities=17%  Similarity=0.189  Sum_probs=124.6

Q ss_pred             HHHHHHHhhcCCCC-HHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccC-cchHHHHHHHHHHHHHHHHhhhhHH
Q 020587           82 TSVKTLVAGLDSKD-WVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKN-PRSAVCKTAIMTAADIFSAYNDRMI  159 (324)
Q Consensus        82 ~~L~~~l~~L~s~d-W~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vks-LRS~Vsk~A~~tl~dLf~~L~~~m~  159 (324)
                      ..|.-++..+++++ =....+|+--+-.++.+-..-+...++.+.+-+..-++| --.+||-.|+-.+|||+++|+.+|.
T Consensus       596 ~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~  675 (859)
T KOG1241|consen  596 QIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDIL  675 (859)
T ss_pred             HHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            34555555555521 123455665566665544444456778888888888855 6799999999999999999999999


Q ss_pred             hhHHHHHHHHHHHhcCCh-------HHHHHHHHHHHHHHHhhcChhh-hHHHHhhhcc---CCC--------HHHHHHHH
Q 020587          160 DLLDPLLVQLLLKSSQDK-------RFVCEAAEKALVAMTTWVSPIL-LLPKLQPYLK---NRN--------PRIRAKAS  220 (324)
Q Consensus       160 ~~~d~ll~~LL~Ka~~sk-------~FI~e~A~~AL~amv~~vs~~~-ll~~L~~~~~---hKN--------p~VR~~aa  220 (324)
                      ||.|.++..|++..++.+       .++.-=++-||..=-.--++-. +++.|+....   .++        -.+|..+.
T Consensus       676 py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as~~~~d~~~~~~~dYvd~LRe~~l  755 (859)
T KOG1241|consen  676 PYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGADFEPYLEMVMPLLQQASSVQTDPADDSMVDYVDELREGIL  755 (859)
T ss_pred             hHHHHHHHHHHHHccCccccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHHH
Confidence            999999999999987642       2444445555443222223333 5556654442   221        36888888


Q ss_pred             HHHHhhccccccc---chhhccHHHHHHHHHHhccCCCH--HHHHHHHHHHHHHHHHhhhc
Q 020587          221 MCFSRSVPRLGVE---GIKEYGIDKLIQVAASQLSDQLP--ESREAARTLLLELQSVYEKS  276 (324)
Q Consensus       221 ~~L~~~v~~~g~~---~i~~~~~~~ll~~l~~~L~D~~p--EvR~~AR~~l~~L~~~~~~~  276 (324)
                      .....++.-++.+   .+..--++.++..+.+--.|..-  -+-..|-.++.-|-..||+.
T Consensus       756 eay~gi~qglk~~~~~~~~~p~v~~I~sfi~~I~~e~~~~~~~~~~a~GlIgDL~~~fg~~  816 (859)
T KOG1241|consen  756 EAYTGIIQGLKTHADVMLVQPYVPHIISFIDRIAAEPDVSEALHAAALGLIGDLATMFGKG  816 (859)
T ss_pred             HHHHHHHHHhhcccchhhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHcccc
Confidence            8888777766632   11111267777777666665553  34445566677777777743

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=95.27  E-value=1.2  Score=48.45  Aligned_cols=204  Identities=17%  Similarity=0.174  Sum_probs=139.5

Q ss_pred             HHHHHHHhhcCCC-CHHHHHHHHHHHHHHHhHc-HHHHHH-hhhhHHHHHHHHcc-CcchHHHHHHHHHHHHHHHHhhhh
Q 020587           82 TSVKTLVAGLDSK-DWVVVCEALNNVRRLSIFH-KEAMLD-ILGDVIPLVVKSLK-NPRSAVCKTAIMTAADIFSAYNDR  157 (324)
Q Consensus        82 ~~L~~~l~~L~s~-dW~~r~eaL~~LRrLa~~h-~~~l~~-~L~~iv~~l~~~vk-sLRS~Vsk~A~~tl~dLf~~L~~~  157 (324)
                      ..+++++.+|..+ |=..+++||..|=.+.... .+.+.+ .+..+++.+++.++ .-+--+--.||.|+..||..|.+.
T Consensus       167 Sk~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S  246 (1051)
T KOG0168|consen  167 SKAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRS  246 (1051)
T ss_pred             HHHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccch
Confidence            3578999999876 8889999999998876544 444442 35667777777665 244677789999999999999988


Q ss_pred             HHhhHH-HHHHHHHHHhcCC-hHHHHHHHHHHHHHHHhhcChhhhHHH-----HhhhccCCCHHHHHHHHHHHHhhcccc
Q 020587          158 MIDLLD-PLLVQLLLKSSQD-KRFVCEAAEKALVAMTTWVSPILLLPK-----LQPYLKNRNPRIRAKASMCFSRSVPRL  230 (324)
Q Consensus       158 m~~~~d-~ll~~LL~Ka~~s-k~FI~e~A~~AL~amv~~vs~~~ll~~-----L~~~~~hKNp~VR~~aa~~L~~~v~~~  230 (324)
                      ..--++ ..+|+|+.|...= =-=|+|.+-.||. ++...+|..+|..     ...|+.=-+.-+.+.+.....+|+..+
T Consensus       247 ~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE-~iSR~H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi  325 (1051)
T KOG0168|consen  247 SAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALE-KISRRHPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSI  325 (1051)
T ss_pred             hheeecccchHHHHHhhhhhhhhHHHHHHHHHHH-HHHhhccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            876665 5788888887541 1124444444554 3455677777762     346666677888888988999999998


Q ss_pred             cccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCcchhHHHHHHHhcC
Q 020587          231 GVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSVYEKSHDSAPATVSDSPEMDSWENFCQSKL  301 (324)
Q Consensus       231 g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~~~a~~~~~~~~~~~~~~~w~~~~~~~l  301 (324)
                      .++... + .-..++.+..+|+-.+-..-+++--++..+...|.+             ..++.+..|..-|
T Consensus       326 ~sd~f~-~-v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h-------------~~~kLdql~s~dL  381 (1051)
T KOG0168|consen  326 RSDEFH-F-VMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQH-------------GPDKLDQLCSHDL  381 (1051)
T ss_pred             CCccch-H-HHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhccc-------------ChHHHHHHhchhH
Confidence            877332 2 344567777777766666666665555544443332             3467777776555

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)

Probab=95.12  E-value=0.1  Score=44.99  Aligned_cols=83  Identities=13%  Similarity=0.182  Sum_probs=70.1

Q ss_pred             cChhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccC-CCHHHHHHHHHHHHHHHHHh
Q 020587          195 VSPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSD-QLPESREAARTLLLELQSVY  273 (324)
Q Consensus       195 vs~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D-~~pEvR~~AR~~l~~L~~~~  273 (324)
                      ..+..++..|..-++|+||.|...+..+|..|+++-|..-..+..-..+++.+.+++.+ .+++||+-...++......|
T Consensus        33 ~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f  112 (144)
T cd03568          33 NGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEF  112 (144)
T ss_pred             ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHh
Confidence            35556888888888999999999999999999999988744445678888999999999 89999999999998888888


Q ss_pred             hhcC
Q 020587          274 EKSH  277 (324)
Q Consensus       274 ~~~a  277 (324)
                      ....
T Consensus       113 ~~~~  116 (144)
T cd03568         113 KNDP  116 (144)
T ss_pred             CCCc
Confidence            7433

Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.

>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]

Probab=94.72  E-value=1  Score=50.61  Aligned_cols=205  Identities=16%  Similarity=0.172  Sum_probs=139.3

Q ss_pred             HHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHH---HHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhHH---HHHHHHH
Q 020587           97 VVVCEALNNVRRLSIFHKEAMLDILGDVIPLV---VKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLD---PLLVQLL  170 (324)
Q Consensus        97 ~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l---~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d---~ll~~LL  170 (324)
                      -+|..|...|.-|+++....+...+..+-..+   +...-+..+     -...-=+.|.++-..|..++.   ..++.|+
T Consensus       748 ~errgael~L~~l~~~fg~sl~~klp~l~~~L~~~L~~~~~~~d-----~~~~s~~vf~s~~~~m~s~l~~~~~~l~~l~  822 (1549)
T KOG0392|consen  748 FERRGAELFLKILSKMFGGSLAAKLPHLWDFLLKALSGLIDGND-----EFLSSFEVFNSLAPLMHSFLHPLGSLLPRLF  822 (1549)
T ss_pred             HHhhhHHHHHHHHHHHhhHHHHHhcchHHHHHHHhhhccCCCCc-----chhhhHHHHHHHHHhhhhhhhhhhhhhhHHH
Confidence            34777888888888877555554333332322   222223342     222222444444444444443   4555666


Q ss_pred             HHhcCChHHHHHHHHHHHHHHHhhcChhh---hHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHHHHHHH
Q 020587          171 LKSSQDKRFVCEAAEKALVAMTTWVSPIL---LLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVA  247 (324)
Q Consensus       171 ~Ka~~sk~FI~e~A~~AL~amv~~vs~~~---ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l  247 (324)
                      .-....-..+|-++.+|+..|....+-..   ++..+.+-++.-...+|+..+.++..++..++..++..+ ...++.-+
T Consensus       823 ~~~~s~~~a~r~~~ar~i~~~~k~~~~e~m~~v~~~~~~ll~~~~~~~~r~~a~e~~~~l~~~l~~~l~~~-~~Llv~pl  901 (1549)
T KOG0392|consen  823 FFVRSIHIAVRYAAARCIGTMFKSATRETMATVINGFLPLLGDLDKFVRRQGADELIELLDAVLMVGLVPY-NPLLVVPL  901 (1549)
T ss_pred             HhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHhhhhhHHHHHHHHHHhhccccccc-ceeehhhh
Confidence            65556678899999999999998877655   444566666777778999999999999999888777766 67788888


Q ss_pred             HHhccCCCHHHHHHHHHHHHHHHHHhhhcCCCCCCC--CCC-CcchhHHHHHHHhcCChhhHH
Q 020587          248 ASQLSDQLPESREAARTLLLELQSVYEKSHDSAPAT--VSD-SPEMDSWENFCQSKLSPLSAQ  307 (324)
Q Consensus       248 ~~~L~D~~pEvR~~AR~~l~~L~~~~~~~a~~~~~~--~~~-~~~~~~w~~~~~~~l~~~~~~  307 (324)
                      ...++|..-.+|++|-+.+..+....+-.+-.++.+  +++ -...++-..|.+.-|.|...-
T Consensus       902 lr~msd~~d~vR~aat~~fa~lip~~~le~g~~~p~gls~eLl~~ke~erkFLeqlldpski~  964 (1549)
T KOG0392|consen  902 LRRMSDQIDSVREAATKVFAKLIPLLPLEAGIPDPTGLSKELLASKEEERKFLEQLLDPSKIP  964 (1549)
T ss_pred             hcccccchHHHHHHHHHHHHHHhcccccccCCCCCccccHHHHHhHHHHHHHHHHhcCcccCC
Confidence            889999999999999999999998888777543321  111 123467777888888776543

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.62  E-value=0.57  Score=48.36  Aligned_cols=196  Identities=19%  Similarity=0.117  Sum_probs=125.7

Q ss_pred             HHHHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhh-hhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHh
Q 020587           82 TSVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDIL-GDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMID  160 (324)
Q Consensus        82 ~~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L-~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~  160 (324)
                      ..|..++..|.+.|=+...+|+..|+.|+.+-++.+.-.+ -.+++.++..+...--.|.--|+.++|-+..+-.....-
T Consensus       237 ~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~  316 (514)
T KOG0166|consen  237 PILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQV  316 (514)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHH
Confidence            3444445555566666666666666666655454443322 346788888888777777788999999876665444333


Q ss_pred             hHH-HHHHHHHHHhc-CChHHHHHHHHHHHHHHHhhcC-------hhhhHHHHhhhccCCCHHHHHHHHHHHHhhccccc
Q 020587          161 LLD-PLLVQLLLKSS-QDKRFVCEAAEKALVAMTTWVS-------PILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLG  231 (324)
Q Consensus       161 ~~d-~ll~~LL~Ka~-~sk~FI~e~A~~AL~amv~~vs-------~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g  231 (324)
                      -++ ..++.|..... ..+..|+.+|..++--|+....       ..-++|.|...+++---.+|.+++-.+.++...-.
T Consensus       317 vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~  396 (514)
T KOG0166|consen  317 VINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGT  396 (514)
T ss_pred             HHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCC
Confidence            333 35666666666 4477799999999988766433       23477777777777668899999999998887633


Q ss_pred             ccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhcC
Q 020587          232 VEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSVYEKSH  277 (324)
Q Consensus       232 ~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~~~a  277 (324)
                      .+.+.-.--.-+++.+..+|...+...=..+..++..+.++.+...
T Consensus       397 ~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~  442 (514)
T KOG0166|consen  397 PEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEK  442 (514)
T ss_pred             HHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhc
Confidence            3322211122277778888866666665555555555555555444

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=94.59  E-value=3.2  Score=40.19  Aligned_cols=152  Identities=16%  Similarity=0.152  Sum_probs=97.0

Q ss_pred             hhhhHHHHHHHHccCcc-hHHHHHHHH-HHHHHHHHhhhhHHhhHH--HHHHHH----HHHhcCC--------hHHHHHH
Q 020587          120 ILGDVIPLVVKSLKNPR-SAVCKTAIM-TAADIFSAYNDRMIDLLD--PLLVQL----LLKSSQD--------KRFVCEA  183 (324)
Q Consensus       120 ~L~~iv~~l~~~vksLR-S~Vsk~A~~-tl~dLf~~L~~~m~~~~d--~ll~~L----L~Ka~~s--------k~FI~e~  183 (324)
                      .+..+.+.+.+.+++-. +.-+|.+|. |++-+....+...+...+  .++..+    ..+....        ..-|..+
T Consensus       126 i~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~a  205 (309)
T PF05004_consen  126 IFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAA  205 (309)
T ss_pred             HHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHH
Confidence            34556667777777654 444666766 777666655555433221  333322    2332221        2456677


Q ss_pred             HHHHHHHHHhhcChhh-------hHHHHhhhccCCCHHHHHHHHHHHHhhccccccc--chhhccHHHHHHHHHHhccCC
Q 020587          184 AEKALVAMTTWVSPIL-------LLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVE--GIKEYGIDKLIQVAASQLSDQ  254 (324)
Q Consensus       184 A~~AL~amv~~vs~~~-------ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~--~i~~~~~~~ll~~l~~~L~D~  254 (324)
                      |-.+-..++..+++.+       .+|.|...+.+.+..||..+.+.|.-+.+.....  .....+.+.+++.+..+..|+
T Consensus       206 AL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~~~~~~~~~~~~~l~~~l~~La~dS  285 (309)
T PF05004_consen  206 ALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELARDHEEDFLYEDMEELLEQLRELATDS  285 (309)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhcccccccccCHHHHHHHHHHHHHhc
Confidence            7777777777777722       4566788889999999999999999998875532  122236899999999999997


Q ss_pred             CHHHHHHHHHHHHHHHHHhh
Q 020587          255 LPESREAARTLLLELQSVYE  274 (324)
Q Consensus       255 ~pEvR~~AR~~l~~L~~~~~  274 (324)
                         .+..+|+=-...+..|.
T Consensus       286 ---~K~~sKkdrk~qRs~Fr  302 (309)
T PF05004_consen  286 ---SKSRSKKDRKQQRSSFR  302 (309)
T ss_pred             ---cCccchhHHHHHHHHHH
Confidence               34455555555555554

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=94.47  E-value=0.078  Score=33.41  Aligned_cols=30  Identities=30%  Similarity=0.366  Sum_probs=25.1

Q ss_pred             HHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Q 020587          243 LIQVAASQLSDQLPESREAARTLLLELQSV  272 (324)
Q Consensus       243 ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~  272 (324)
                      |++.+.++++|.+++||++|-.++..+.++
T Consensus         1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~   30 (31)
T PF02985_consen    1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH   30 (31)
T ss_dssp             HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence            578899999999999999999999876553

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule)

Probab=94.34  E-value=0.46  Score=40.12  Aligned_cols=81  Identities=16%  Similarity=0.132  Sum_probs=65.0

Q ss_pred             ChhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccC---CCHHHHHHHHHHHHHHHHH
Q 020587          196 SPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSD---QLPESREAARTLLLELQSV  272 (324)
Q Consensus       196 s~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D---~~pEvR~~AR~~l~~L~~~  272 (324)
                      .+...+..|..-++|+||.+...+...|..|+++-|..-........++..+.+++..   .+++||.-...++......
T Consensus        34 ~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~  113 (133)
T cd03561          34 GPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSES  113 (133)
T ss_pred             CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHH
Confidence            5566888899999999999999999999999999887643444444555557777776   4889999999999888888


Q ss_pred             hhhc
Q 020587          273 YEKS  276 (324)
Q Consensus       273 ~~~~  276 (324)
                      |+..
T Consensus       114 f~~~  117 (133)
T cd03561         114 FGGH  117 (133)
T ss_pred             hcCC
Confidence            8754

It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=94.21  E-value=2.8  Score=43.21  Aligned_cols=180  Identities=19%  Similarity=0.178  Sum_probs=122.1

Q ss_pred             HHhhcCCCCHHHHHHHHHHHHHHHhH-cHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhH-HH
Q 020587           87 LVAGLDSKDWVVVCEALNNVRRLSIF-HKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLL-DP  164 (324)
Q Consensus        87 ~l~~L~s~dW~~r~eaL~~LRrLa~~-h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~-d~  164 (324)
                      +|..|.+.+=+....+...|+++... .|..+   +.++...+...+.+....|-+.+|..++.+...-.....-.. ..
T Consensus        43 lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l---~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~  119 (503)
T PF10508_consen   43 LFDCLNTSNREQVELICDILKRLLSALSPDSL---LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNE  119 (503)
T ss_pred             HHHHHhhcChHHHHHHHHHHHHHHhccCHHHH---HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCcc
Confidence            56666666555556666667776553 34444   556667778888889999999999887777644322222111 45


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhh-h-----HHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhc
Q 020587          165 LLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPIL-L-----LPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEY  238 (324)
Q Consensus       165 ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~-l-----l~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~  238 (324)
                      +++.++...++.+.-|++.|..+|..+..+-.... +     +..|...+.+.|..+|..+..++..+...- .+ ....
T Consensus       120 l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S-~~-~~~~  197 (503)
T PF10508_consen  120 LLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHS-PE-AAEA  197 (503)
T ss_pred             HHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcC-HH-HHHH
Confidence            78888888999999999999999999987644333 4     456777777779999999888887776542 21 2221


Q ss_pred             -cHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 020587          239 -GIDKLIQVAASQLSDQLPESREAARTLLLELQS  271 (324)
Q Consensus       239 -~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~  271 (324)
                       .-.-+++.+.+.+.+.+.=+|..+-.++..|-.
T Consensus       198 ~~~sgll~~ll~eL~~dDiLvqlnalell~~La~  231 (503)
T PF10508_consen  198 VVNSGLLDLLLKELDSDDILVQLNALELLSELAE  231 (503)
T ss_pred             HHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc
Confidence             112266777777777777788777777665544

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=94.05  E-value=4.6  Score=41.61  Aligned_cols=171  Identities=19%  Similarity=0.163  Sum_probs=106.3

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhh-hhHHhh
Q 020587           83 SVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYN-DRMIDL  161 (324)
Q Consensus        83 ~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~-~~m~~~  161 (324)
                      .+...++.|..+  ..+++.|..++.-....+ ++. .+..-+  +...+.+-.....-.+|.++..++..+. ...   
T Consensus         4 ~~~~~l~~l~~~--~~~~~~L~~l~~~~~~~~-~l~-~~~~~~--lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l---   74 (503)
T PF10508_consen    4 WINELLEELSSK--AERLEALPELKTELSSSP-FLE-RLPEPV--LFDCLNTSNREQVELICDILKRLLSALSPDSL---   74 (503)
T ss_pred             HHHHHHHHHhcc--cchHHHHHHHHHHHhhhh-HHH-hchHHH--HHHHHhhcChHHHHHHHHHHHHHHhccCHHHH---
Confidence            344555566555  456777777766444333 111 111111  4444444444555678888888888763 333   


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhc-------ChhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccc
Q 020587          162 LDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWV-------SPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEG  234 (324)
Q Consensus       162 ~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~v-------s~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~  234 (324)
                      ...+.+.|..-....+..|+.-+-.+|..++.+-       ....+++.|..++.+.+..|...++..|..+...-  .+
T Consensus        75 ~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~--~~  152 (503)
T PF10508_consen   75 LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHP--EG  152 (503)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCc--hh
Confidence            3444444444445567788888888877665443       44668889999999999999999999999888742  11


Q ss_pred             hhhccHHHH-----HHHHHHhccCCCHHHHHHHHHHHHHH
Q 020587          235 IKEYGIDKL-----IQVAASQLSDQLPESREAARTLLLEL  269 (324)
Q Consensus       235 i~~~~~~~l-----l~~l~~~L~D~~pEvR~~AR~~l~~L  269 (324)
                           .+.+     ...+..++.-.+..+|...-.++..+
T Consensus       153 -----~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i  187 (503)
T PF10508_consen  153 -----LEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEI  187 (503)
T ss_pred             -----HHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence                 2223     66677777666888886555544433

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=94.04  E-value=1.8  Score=46.06  Aligned_cols=144  Identities=11%  Similarity=0.126  Sum_probs=100.8

Q ss_pred             hhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChh----hhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccch
Q 020587          160 DLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPI----LLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGI  235 (324)
Q Consensus       160 ~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~----~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i  235 (324)
                      +|--.+++.|++..+..-+-||----.=++.-+.+.+++    +++|.+..|+.+.|+.+|..|..++..++..++.+.+
T Consensus       326 eyq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~L  405 (690)
T KOG1243|consen  326 EYQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNL  405 (690)
T ss_pred             ccccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhh
Confidence            345568899999998888899988888888888888754    4788999999999999999999999999988876522


Q ss_pred             hh-----c----c-------------------------HHHHHH-HHHHhccCCCHHHHHHHHHHHHHHHHHhhhcCCCC
Q 020587          236 KE-----Y----G-------------------------IDKLIQ-VAASQLSDQLPESREAARTLLLELQSVYEKSHDSA  280 (324)
Q Consensus       236 ~~-----~----~-------------------------~~~ll~-~l~~~L~D~~pEvR~~AR~~l~~L~~~~~~~a~~~  280 (324)
                      -.     +    .                         +..++. +-.+.+.|..+-+|.++-..++...+.|+...-+.
T Consensus       406 n~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~~~va~  485 (690)
T KOG1243|consen  406 NGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASVRKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQSEVAN  485 (690)
T ss_pred             cHHHHHHHHhhCccccCcccccceeeecccccccchhhhccccchhhhhhhcCCCCCchhhhhHHHhhcccccchhhhhh
Confidence            10     0    0                         111111 22335667888888888888888888887665422


Q ss_pred             CCC---------CCC---CcchhHHHHHHHhcCCh
Q 020587          281 PAT---------VSD---SPEMDSWENFCQSKLSP  303 (324)
Q Consensus       281 ~~~---------~~~---~~~~~~w~~~~~~~l~~  303 (324)
                      ..-         ++.   +.....|..|..+...-
T Consensus       486 kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl~~~  520 (690)
T KOG1243|consen  486 KILPSLVPLTVDPEKTVRDTAEKAIRQFLEKLEKV  520 (690)
T ss_pred             hccccccccccCcccchhhHHHHHHHHHHhhhhhh
Confidence            111         111   23457888888776544

>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM

Probab=93.83  E-value=0.37  Score=41.03  Aligned_cols=80  Identities=16%  Similarity=0.181  Sum_probs=64.2

Q ss_pred             ChhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccCCCHH----HHHHHHHHHHHHHH
Q 020587          196 SPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPE----SREAARTLLLELQS  271 (324)
Q Consensus       196 s~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pE----vR~~AR~~l~~L~~  271 (324)
                      .+..++..|...++|+||.+...+..+|..|+++-|..-....+...+++.+.+++.+....    ||+....++.....
T Consensus        39 ~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~  118 (140)
T PF00790_consen   39 GAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE  118 (140)
T ss_dssp             HHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence            34457788999999999999999999999999998887444556677888888877765432    89999988888888


Q ss_pred             Hhhh
Q 020587          272 VYEK  275 (324)
Q Consensus       272 ~~~~  275 (324)
                      .|+.
T Consensus       119 ~f~~  122 (140)
T PF00790_consen  119 AFKS  122 (140)
T ss_dssp             HTTT
T ss_pred             HHCC
Confidence            8843

Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=93.69  E-value=0.93  Score=45.03  Aligned_cols=140  Identities=16%  Similarity=0.157  Sum_probs=87.7

Q ss_pred             CHHHHHHHHHhhcCCCCHH-HHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHH-----ccCcchHHHHHHHHHHHHHHH
Q 020587           79 DIDTSVKTLVAGLDSKDWV-VVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKS-----LKNPRSAVCKTAIMTAADIFS  152 (324)
Q Consensus        79 dpe~~L~~~l~~L~s~dW~-~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~-----vksLRS~Vsk~A~~tl~dLf~  152 (324)
                      ||.+-+..-   ++..|+. .|..|.+.||.|+.+.++.+.+.+...+..++..     -.|.|+.  -.|+..++.|..
T Consensus       210 dP~EYIrrd---~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~K--D~Al~Li~ala~  284 (370)
T PF08506_consen  210 DPEEYIRRD---LEGSDSDTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSK--DGALYLIGALAS  284 (370)
T ss_dssp             SHHHHHHHH---SCSS---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHH--HHHHHHHHHHHB
T ss_pred             CHHHHHHhh---ccccccCCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHH--HHHHHHHHHHHh
Confidence            555544443   3334554 5889999999999987777766666666555542     2344433  235655566554


Q ss_pred             Hhhh------------hHHhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhh---hHHHHhhhccCCCHHHHH
Q 020587          153 AYND------------RMIDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPIL---LLPKLQPYLKNRNPRIRA  217 (324)
Q Consensus       153 ~L~~------------~m~~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~---ll~~L~~~~~hKNp~VR~  217 (324)
                      ....            .+.+++...+.+-|.-..+...+++.+|-+.+...-...+...   ++|.+..++++.+..|+.
T Consensus       285 k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~~~~~~~piLka~aik~~~~Fr~~l~~~~l~~~~~~l~~~L~~~~~vv~t  364 (370)
T PF08506_consen  285 KGSTTKSGVTQTNELVDVVDFFSQHVLPELQPDVNSHPILKADAIKFLYTFRNQLPKEQLLQIFPLLVNHLQSSSYVVHT  364 (370)
T ss_dssp             SS--BTTB-S-B-TTS-HHHHHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGGS-HHHHHHHHHHHHHHTTSS-HHHHH
T ss_pred             hhccccCCcccccccccHHHHHHHHhHHHhcccCCCCcchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCCcchhh
Confidence            4421            3466666554444443445678999999998888777777765   556788999999999999


Q ss_pred             HHHHHH
Q 020587          218 KASMCF  223 (324)
Q Consensus       218 ~aa~~L  223 (324)
                      ++|.++
T Consensus       365 yAA~~i  370 (370)
T PF08506_consen  365 YAAIAI  370 (370)
T ss_dssp             HHHHHH
T ss_pred             hhhhhC
Confidence            999875

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.69  E-value=0.9  Score=46.50  Aligned_cols=183  Identities=18%  Similarity=0.141  Sum_probs=128.6

Q ss_pred             HHHHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHH--HhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHH
Q 020587           82 TSVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAML--DILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMI  159 (324)
Q Consensus        82 ~~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~--~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~  159 (324)
                      ..+.++.....+..|+.++.....+-.+.  .|..+.  +.++.+...+....+++-..+-..||.+++.++........
T Consensus       217 ~il~q~~ss~ts~~~~~ritd~Af~ael~--~~~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~  294 (533)
T KOG2032|consen  217 KILAQLLSSITSEKENGRITDIAFFAELK--RPKELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVR  294 (533)
T ss_pred             HHHhhcccccchhcccchHHHHHHHHHHh--CcccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHH
Confidence            34555555556778999998887776663  344555  67889998999999999999999999999999999877777


Q ss_pred             hhHHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHhhcChhhh----HHH---HhhhccCCCHHHHHHHHHHHHhhccccc
Q 020587          160 DLLDPLLVQLLLKSSQD-KRFVCEAAEKALVAMTTWVSPILL----LPK---LQPYLKNRNPRIRAKASMCFSRSVPRLG  231 (324)
Q Consensus       160 ~~~d~ll~~LL~Ka~~s-k~FI~e~A~~AL~amv~~vs~~~l----l~~---L~~~~~hKNp~VR~~aa~~L~~~v~~~g  231 (324)
                      .|...++..++.-..|. +.=|.-++-.+|.-+....+.-.+    ++.   +.+...+-++++|..+-.++..+..--|
T Consensus       295 th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g  374 (533)
T KOG2032|consen  295 THKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAG  374 (533)
T ss_pred             HhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcC
Confidence            77766666666666543 456666777777777776665443    332   3466678999999999888887777554


Q ss_pred             ccchhhccHHHHHHHHHHh---ccCCCHHHHHHHHHHHH
Q 020587          232 VEGIKEYGIDKLIQVAASQ---LSDQLPESREAARTLLL  267 (324)
Q Consensus       232 ~~~i~~~~~~~ll~~l~~~---L~D~~pEvR~~AR~~l~  267 (324)
                      -. -+.+..+.+.+..+.+   |+|.+|-+=.+-|-.+.
T Consensus       375 ~~-~e~~Fte~v~k~~~~lllhl~d~~p~va~ACr~~~~  412 (533)
T KOG2032|consen  375 GG-WEEFFTEQVKKRLAPLLLHLQDPNPYVARACRSELR  412 (533)
T ss_pred             CC-chhhhHHHHHhccccceeeeCCCChHHHHHHHHHHH
Confidence            44 2223245454444444   48999976666665554

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.47  E-value=2.2  Score=45.91  Aligned_cols=110  Identities=20%  Similarity=0.257  Sum_probs=79.5

Q ss_pred             hhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHHHHhcC----ChHHHH---HHHHHHHHHHH
Q 020587          120 ILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLLKSSQ----DKRFVC---EAAEKALVAMT  192 (324)
Q Consensus       120 ~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d~ll~~LL~Ka~~----sk~FI~---e~A~~AL~amv  192 (324)
                      .++.+++.|..++.-..|-|=|+|+.|+..+|+. ..+|-|+...++...|..=.|    .|.|+.   .+=++||+...
T Consensus       131 Llepl~p~IracleHrhsYVRrNAilaifsIyk~-~~~L~pDapeLi~~fL~~e~DpsCkRNAFi~L~~~D~ErAl~Yl~  209 (948)
T KOG1058|consen  131 LLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKN-FEHLIPDAPELIESFLLTEQDPSCKRNAFLMLFTTDPERALNYLL  209 (948)
T ss_pred             HhhhhHHHHHHHHhCcchhhhhhhheeehhHHhh-hhhhcCChHHHHHHHHHhccCchhHHHHHHHHHhcCHHHHHHHHH
Confidence            4677888999999999999999999999999998 678889999999988876544    266764   23455665554


Q ss_pred             hhc---C-hhhhHH----HHhhhccCCCHHHHHHHHHHHHhhcccc
Q 020587          193 TWV---S-PILLLP----KLQPYLKNRNPRIRAKASMCFSRSVPRL  230 (324)
Q Consensus       193 ~~v---s-~~~ll~----~L~~~~~hKNp~VR~~aa~~L~~~v~~~  230 (324)
                      .++   + -...+.    .+..-.-|+||.-|+.--+|+..++.--
T Consensus       210 ~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~~i~~i~~lL~st  255 (948)
T KOG1058|consen  210 SNIDQIPSFNDSLQLVIVELIRKVCLANPAEKARYIRCIYNLLSST  255 (948)
T ss_pred             hhHhhccCccHHHHHHHHHHHHHHHhcCHHHhhHHHHHHHHHHhcC
Confidence            443   2 122333    2334444788888888888888888765

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.43  E-value=5.5  Score=42.94  Aligned_cols=181  Identities=17%  Similarity=0.161  Sum_probs=125.8

Q ss_pred             CCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHH-HHHHHHccCcchHHHHHHHHHHH-------HHHHHhhhhHHhhHH-
Q 020587           93 SKDWVVVCEALNNVRRLSIFHKEAMLDILGDVI-PLVVKSLKNPRSAVCKTAIMTAA-------DIFSAYNDRMIDLLD-  163 (324)
Q Consensus        93 s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv-~~l~~~vksLRS~Vsk~A~~tl~-------dLf~~L~~~m~~~~d-  163 (324)
                      ++|=+-+..|+.-|-+|..-..+++.+.+.+-+ ..-++.|+|-.=.|+-.|+..=+       ||+..++...+...+ 
T Consensus       228 ~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p  307 (859)
T KOG1241|consen  228 SPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPP  307 (859)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Confidence            567778888888888888777899998888844 44578999999999999887666       444445655554444 


Q ss_pred             -----------HHHHHHHHHhcC-------ChHHHHHHHHHHHHHHHhhcCh---hhhHHHHhhhccCCCHHHHHHHHHH
Q 020587          164 -----------PLLVQLLLKSSQ-------DKRFVCEAAEKALVAMTTWVSP---ILLLPKLQPYLKNRNPRIRAKASMC  222 (324)
Q Consensus       164 -----------~ll~~LL~Ka~~-------sk~FI~e~A~~AL~amv~~vs~---~~ll~~L~~~~~hKNp~VR~~aa~~  222 (324)
                                 .++|.||.....       +.=-++.+|..||.-..+.|..   ..++|-+-...++-+.+=|..++..
T Consensus       308 ~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmA  387 (859)
T KOG1241|consen  308 SSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVPHVLPFIEENIQNPDWRNREAAVMA  387 (859)
T ss_pred             hhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchhhhHHHHHHhcCCcchhhhhHHHHH
Confidence                       677777766421       2346889999999887777643   2355566667777777777777777


Q ss_pred             HHhhcccccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhh
Q 020587          223 FSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSVYE  274 (324)
Q Consensus       223 L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~  274 (324)
                      +-.+++--....+... ....++.+-.++.|++--+|..+--.|..+-.+.+
T Consensus       388 FGSIl~gp~~~~Lt~i-V~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~  438 (859)
T KOG1241|consen  388 FGSILEGPEPDKLTPI-VIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLP  438 (859)
T ss_pred             HHhhhcCCchhhhhHH-HhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhch
Confidence            7766664333333322 56667777888889999999776655554443333

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=93.42  E-value=0.63  Score=37.15  Aligned_cols=75  Identities=19%  Similarity=0.144  Sum_probs=64.2

Q ss_pred             HHHHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhh
Q 020587           82 TSVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDR  157 (324)
Q Consensus        82 ~~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~  157 (324)
                      ..++.++..|.++.=--|-.||..||+|...+. .-...++.+...+...+++.=|-|=-+|+.+++.|+..+.+.
T Consensus         3 ~~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~   77 (92)
T PF10363_consen    3 ETLQEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDE   77 (92)
T ss_pred             HHHHHHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHH
Confidence            567889999999988899999999999988766 222357778888899999999999999999999999888764

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=93.29  E-value=6.1  Score=44.45  Aligned_cols=152  Identities=18%  Similarity=0.106  Sum_probs=104.1

Q ss_pred             chHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhh-cCh-----------hhhHHH
Q 020587          136 RSAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTW-VSP-----------ILLLPK  203 (324)
Q Consensus       136 RS~Vsk~A~~tl~dLf~~L~~~m~~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~-vs~-----------~~ll~~  203 (324)
                      ++++.+.=-..+.+|...+.+-|-+++..+++ ||   ....-++|-+.-.++.-++.+ .+.           ..++..
T Consensus       288 d~~g~k~v~~fL~elS~~~P~l~~~~l~~lv~-ll---d~es~~lRnavlei~~n~V~~~l~d~e~~~~sk~~r~~~le~  363 (1251)
T KOG0414|consen  288 DCAGPKIVGNFLVELSERVPKLMLRQLTLLVD-LL---DSESYTLRNAVLEICANLVASELRDEELEEMSKSLRDELLEL  363 (1251)
T ss_pred             cccchhhHHHHHHHHHHHhHHHHHHHHHHHHH-hc---CCchHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHH
Confidence            66777777777888888877777777776666 22   222344444444443333322 221           136667


Q ss_pred             HhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhcCCCCCCC
Q 020587          204 LQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSVYEKSHDSAPAT  283 (324)
Q Consensus       204 L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~~~a~~~~~~  283 (324)
                      |...+..-|+-||.++...+.+++++....   ..-...++.-+..-+.|++.=||++|-+++..|....|....     
T Consensus       364 l~erl~Dvsa~vRskVLqv~~~l~~~~s~p---~~~~~eV~~la~grl~DkSslVRk~Ai~Ll~~~L~~~Pfs~~-----  435 (1251)
T KOG0414|consen  364 LRERLLDVSAYVRSKVLQVFRRLFQQHSIP---LGSRTEVLELAIGRLEDKSSLVRKNAIQLLSSLLDRHPFSSE-----  435 (1251)
T ss_pred             HHHHhhcccHHHHHHHHHHHHHHHHccCCC---ccHHHHHHHHHhcccccccHHHHHHHHHHHHHHHhcCCchhh-----
Confidence            888888999999999999999988874332   223677888888899999999999999999888777665442     


Q ss_pred             CCCCcchhHHHHHHHh
Q 020587          284 VSDSPEMDSWENFCQS  299 (324)
Q Consensus       284 ~~~~~~~~~w~~~~~~  299 (324)
                      -..+.-..+||.+.|.
T Consensus       436 ~~~~~~~~~~E~~~~~  451 (1251)
T KOG0414|consen  436 LRSDDLRAKLEKELQK  451 (1251)
T ss_pred             hcchhhhhhHHHHHHh
Confidence            1123345678887764

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=93.15  E-value=5.1  Score=38.27  Aligned_cols=62  Identities=21%  Similarity=0.212  Sum_probs=34.5

Q ss_pred             cChhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHH
Q 020587          195 VSPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLL  266 (324)
Q Consensus       195 vs~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l  266 (324)
                      +.....++.+..++.+....||..++..|..+....          ..+...+.+.++|.+.++|..+-..+
T Consensus       176 ~~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~----------~~~~~~l~~~~~~~~~~vr~~~~~~l  237 (335)
T COG1413         176 LGDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN----------VEAADLLVKALSDESLEVRKAALLAL  237 (335)
T ss_pred             cCChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch----------hhHHHHHHHHhcCCCHHHHHHHHHHh
Confidence            444555556666666666677776666655544432          23444455555566666655554443

>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins

Probab=93.06  E-value=0.47  Score=40.75  Aligned_cols=78  Identities=13%  Similarity=0.084  Sum_probs=62.6

Q ss_pred             hhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccC------CCHHHHHHHHHHHHHHH
Q 020587          197 PILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSD------QLPESREAARTLLLELQ  270 (324)
Q Consensus       197 ~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D------~~pEvR~~AR~~l~~L~  270 (324)
                      +...+..|..-++|+||.+.-.+..+|..|+++-|..--.......++..+.+++.+      ..++||+-...++....
T Consensus        36 ~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~  115 (139)
T cd03567          36 PQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWT  115 (139)
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence            344677788889999999999999999999999988744444566777777777754      57899999999998777


Q ss_pred             HHhh
Q 020587          271 SVYE  274 (324)
Q Consensus       271 ~~~~  274 (324)
                      ..|+
T Consensus       116 ~~f~  119 (139)
T cd03567         116 LELP  119 (139)
T ss_pred             HHhc
Confidence            7776

The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=92.98  E-value=0.13  Score=32.35  Aligned_cols=29  Identities=31%  Similarity=0.581  Sum_probs=22.2

Q ss_pred             hHHHHhhhccCCCHHHHHHHHHHHHhhcc
Q 020587          200 LLPKLQPYLKNRNPRIRAKASMCFSRSVP  228 (324)
Q Consensus       200 ll~~L~~~~~hKNp~VR~~aa~~L~~~v~  228 (324)
                      ++|.|...+++.++.||..++.+|..+++
T Consensus         1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~   29 (31)
T PF02985_consen    1 LLPILLQLLNDPSPEVRQAAAECLGAIAE   29 (31)
T ss_dssp             HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence            46777888888888888888888877654

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)

Probab=92.88  E-value=0.57  Score=40.28  Aligned_cols=82  Identities=16%  Similarity=0.223  Sum_probs=66.1

Q ss_pred             cChhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHHHHh
Q 020587          195 VSPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLS-DQLPESREAARTLLLELQSVY  273 (324)
Q Consensus       195 vs~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~-D~~pEvR~~AR~~l~~L~~~~  273 (324)
                      ..+...+..|..-++|+||.+...+..+|..|+++-|..-.....-..+++.+.+++. ...++||+-...++......|
T Consensus        37 ~~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f  116 (142)
T cd03569          37 VQPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAF  116 (142)
T ss_pred             CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHh
Confidence            4556688889999999999999999999999999988864444456777777777776 567899999999988877777


Q ss_pred             hhc
Q 020587          274 EKS  276 (324)
Q Consensus       274 ~~~  276 (324)
                      ...
T Consensus       117 ~~~  119 (142)
T cd03569         117 RNK  119 (142)
T ss_pred             CCC
Confidence            644

The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=92.86  E-value=2.7  Score=44.19  Aligned_cols=180  Identities=19%  Similarity=0.191  Sum_probs=95.4

Q ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHH-------H------------------------hhhh---HHHHHH
Q 020587           84 VKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAML-------D------------------------ILGD---VIPLVV  129 (324)
Q Consensus        84 L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~-------~------------------------~L~~---iv~~l~  129 (324)
                      +..+-.-|.+..-..|+.|+..|-+|+...|+.+.       .                        .+..   .++..+
T Consensus       305 vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN~evEsLIsd~Nr~IstyAITtLLKTGt~e~idrLv~~I~sfv  384 (898)
T COG5240         305 VSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCNKEVESLISDENRTISTYAITTLLKTGTEETIDRLVNLIPSFV  384 (898)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecChhHHHHhhcccccchHHHHHHHHHcCchhhHHHHHHHHHHHH
Confidence            33344445677888899999999998875443211       0                        0111   112222


Q ss_pred             HHccCcchHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHHHHhcCC-hH-----------HHHHHHHHHHHHHHh---h
Q 020587          130 KSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLLKSSQD-KR-----------FVCEAAEKALVAMTT---W  194 (324)
Q Consensus       130 ~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d~ll~~LL~Ka~~s-k~-----------FI~e~A~~AL~amv~---~  194 (324)
                      --|.|-=-.++-.|+.+++-+|..-+   +.+++-+...|+++-|-. |+           |+-+.-++||...|.   -
T Consensus       385 hD~SD~FKiI~ida~rsLsl~Fp~k~---~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEraLe~LC~fIED  461 (898)
T COG5240         385 HDMSDGFKIIAIDALRSLSLLFPSKK---LSYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKERALEVLCTFIED  461 (898)
T ss_pred             HhhccCceEEeHHHHHHHHhhCcHHH---HHHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHhh
Confidence            22222222333445544444444333   444444555555443321 32           332334455554444   4


Q ss_pred             cChhhhHHHHh-----hhccCC----------------CHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccC
Q 020587          195 VSPILLLPKLQ-----PYLKNR----------------NPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSD  253 (324)
Q Consensus       195 vs~~~ll~~L~-----~~~~hK----------------Np~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D  253 (324)
                      |..+++.-.|.     .+-+.+                |.-||+.+..+|...--.....    +.-+.+..++.++++|
T Consensus       462 cey~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~----~~~~sv~~~lkRclnD  537 (898)
T COG5240         462 CEYHQITVRILGILGREGPRAKTPGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDV----VSPQSVENALKRCLND  537 (898)
T ss_pred             cchhHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCcccc----ccHHHHHHHHHHHhhc
Confidence            55555333222     222333                3456666666665543332221    2357788889999999


Q ss_pred             CCHHHHHHHHHHHHHHH
Q 020587          254 QLPESREAARTLLLELQ  270 (324)
Q Consensus       254 ~~pEvR~~AR~~l~~L~  270 (324)
                      ++-|+|+.|--++..++
T Consensus       538 ~DdeVRdrAsf~l~~~~  554 (898)
T COG5240         538 QDDEVRDRASFLLRNMR  554 (898)
T ss_pred             ccHHHHHHHHHHHHhhh
Confidence            99999999998887665

>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional

Probab=92.53  E-value=12  Score=44.52  Aligned_cols=211  Identities=13%  Similarity=0.156  Sum_probs=124.8

Q ss_pred             HHHHHhhcCCC-CHHHHHHHHHHHHHHHhHc--HHHHH-H-hhhhHHHHHHHHccCcch-HHHHHHHHHHHHHHHHhhhh
Q 020587           84 VKTLVAGLDSK-DWVVVCEALNNVRRLSIFH--KEAML-D-ILGDVIPLVVKSLKNPRS-AVCKTAIMTAADIFSAYNDR  157 (324)
Q Consensus        84 L~~~l~~L~s~-dW~~r~eaL~~LRrLa~~h--~~~l~-~-~L~~iv~~l~~~vksLRS-~Vsk~A~~tl~dLf~~L~~~  157 (324)
                      +...|...... +=..++.|++.||+|+...  .+.+. - .-++++..+.-.|++.++ .|-...+.|+..|....+..
T Consensus      1138 l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~n 1217 (1780)
T PLN03076       1138 LSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNN 1217 (1780)
T ss_pred             HHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhh
Confidence            44444444333 5456889999999998742  11111 1 112344434333333333 67777888999998888877


Q ss_pred             HHhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhh----cC------hhhhHHHHhhhccCC-CHHHHHHHHHHHHhh
Q 020587          158 MIDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTW----VS------PILLLPKLQPYLKNR-NPRIRAKASMCFSRS  226 (324)
Q Consensus       158 m~~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~----vs------~~~ll~~L~~~~~hK-Np~VR~~aa~~L~~~  226 (324)
                      +..--..++..|-.-+.+...-+.+-|=.++..|+..    ++      ...++..|....+.+ +..+=-.+..+|-.|
T Consensus      1218 IkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~ 1297 (1780)
T PLN03076       1218 VKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFC 1297 (1780)
T ss_pred             hhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHH
Confidence            7766666666665555666666666677777766543    22      123555565565544 333333444444433


Q ss_pred             cccccc--------------------------cc---hhhc-----cHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Q 020587          227 VPRLGV--------------------------EG---IKEY-----GIDKLIQVAASQLSDQLPESREAARTLLLELQSV  272 (324)
Q Consensus       227 v~~~g~--------------------------~~---i~~~-----~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~  272 (324)
                      ...+-.                          +.   +...     .-=.++..+.....|..+|||..|-..|......
T Consensus      1298 ~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~ 1377 (1780)
T PLN03076       1298 ATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRN 1377 (1780)
T ss_pred             HHHHHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH
Confidence            221100                          00   0000     0123455666678899999999999988766677


Q ss_pred             hhhcCCCCCCCCCCCcchhHHHHHHHhcCChhh
Q 020587          273 YEKSHDSAPATVSDSPEMDSWENFCQSKLSPLS  305 (324)
Q Consensus       273 ~~~~a~~~~~~~~~~~~~~~w~~~~~~~l~~~~  305 (324)
                      ||+.-           .++-|+..|..-|-|+-
T Consensus      1378 yG~~F-----------s~~~W~~if~~VLFPIF 1399 (1780)
T PLN03076       1378 HGHLF-----------SLPLWERVFESVLFPIF 1399 (1780)
T ss_pred             hhccC-----------CHHHHHHHHHHHHHHHH
Confidence            77665           58999999998888873

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=92.36  E-value=4.4  Score=38.65  Aligned_cols=155  Identities=22%  Similarity=0.192  Sum_probs=101.2

Q ss_pred             HHHHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhh
Q 020587           82 TSVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDL  161 (324)
Q Consensus        82 ~~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~  161 (324)
                      .....++..+.+++|..|..+...+..+          -..+.++.+...+.+....|-..|..+++++       .+  
T Consensus        43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~----------~~~~av~~l~~~l~d~~~~vr~~a~~aLg~~-------~~--  103 (335)
T COG1413          43 EAADELLKLLEDEDLLVRLSAAVALGEL----------GSEEAVPLLRELLSDEDPRVRDAAADALGEL-------GD--  103 (335)
T ss_pred             hhHHHHHHHHcCCCHHHHHHHHHHHhhh----------chHHHHHHHHHHhcCCCHHHHHHHHHHHHcc-------CC--
Confidence            4667788888888998888777652222          2345567777888888888888887644443       22  


Q ss_pred             HHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHhhcChhhhHHHHhhhccCCCHHH------------HHHHHHHHHhhcc
Q 020587          162 LDPLLVQLLLKSS-QDKRFVCEAAEKALVAMTTWVSPILLLPKLQPYLKNRNPRI------------RAKASMCFSRSVP  228 (324)
Q Consensus       162 ~d~ll~~LL~Ka~-~sk~FI~e~A~~AL~amv~~vs~~~ll~~L~~~~~hKNp~V------------R~~aa~~L~~~v~  228 (324)
                       +..++.|+.... +.+.++|..+..+|..+-.    .+.+..|...+++.+..+            |..+..-      
T Consensus       104 -~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~----~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~------  172 (335)
T COG1413         104 -PEAVPPLVELLENDENEGVRAAAARALGKLGD----ERALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEA------  172 (335)
T ss_pred             -hhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCc----hhhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHH------
Confidence             333444444444 7899999999999987443    333555555555555333            2222222      


Q ss_pred             cccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Q 020587          229 RLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSV  272 (324)
Q Consensus       229 ~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~  272 (324)
                            +...+.+...+.+..++.|....+|..|...+..+...
T Consensus       173 ------l~~~~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~  210 (335)
T COG1413         173 ------LGELGDPEAIPLLIELLEDEDADVRRAAASALGQLGSE  210 (335)
T ss_pred             ------HHHcCChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcc
Confidence                  11235667778888899999999999999988754433

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=92.31  E-value=1  Score=49.11  Aligned_cols=108  Identities=22%  Similarity=0.264  Sum_probs=86.4

Q ss_pred             HHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHHHHhcCCh---HHHHHHHHHHHHHH
Q 020587          115 EAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLLKSSQDK---RFVCEAAEKALVAM  191 (324)
Q Consensus       115 ~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d~ll~~LL~Ka~~sk---~FI~e~A~~AL~am  191 (324)
                      +.+.+.+..+.+.+++.+.=+--.|--.+..|+..+..-.+.-+..|++.++|.||.-..+-+   ..||+.|-.+|.++
T Consensus       901 ~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL  980 (1030)
T KOG1967|consen  901 QVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNAL  980 (1030)
T ss_pred             HhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHH
Confidence            455688999999999987743333334456888888888889999999999999999876543   79999999999999


Q ss_pred             HhhcChhh-------hHHHHhhhccCCCHHHHHHHHHH
Q 020587          192 TTWVSPIL-------LLPKLQPYLKNRNPRIRAKASMC  222 (324)
Q Consensus       192 v~~vs~~~-------ll~~L~~~~~hKNp~VR~~aa~~  222 (324)
                      .+..++..       ++..|.+.+.||--.||..++.+
T Consensus       981 ~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen  981 TRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred             hccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence            99666644       55678899999999999998654

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=92.23  E-value=0.64  Score=50.70  Aligned_cols=112  Identities=14%  Similarity=0.156  Sum_probs=94.3

Q ss_pred             HHHHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcc--hHHHH-HHHHHHHHHHHHhh-hh
Q 020587           82 TSVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPR--SAVCK-TAIMTAADIFSAYN-DR  157 (324)
Q Consensus        82 ~~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLR--S~Vsk-~A~~tl~dLf~~L~-~~  157 (324)
                      ..+.-+++.|+=.|=..|+.+++.+.-+..-|+.++...+..+++.++..-++..  +.|+| .|++|+.-|.+.+. +.
T Consensus       909 ~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~  988 (1030)
T KOG1967|consen  909 MLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKS  988 (1030)
T ss_pred             hHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcc
Confidence            3455778888988999999999999999888888888899999988877666555  46666 58899999998765 78


Q ss_pred             HHhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHh
Q 020587          158 MIDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTT  193 (324)
Q Consensus       158 m~~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~  193 (324)
                      +.+|-+.++.+|.+-..|.|+.||++|-+|=..+..
T Consensus       989 l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W~~ 1024 (1030)
T KOG1967|consen  989 LLSFRPLVLRALIKILDDKKRLVRKEAVDTRQNWYM 1024 (1030)
T ss_pred             cccccHHHHHHhhhccCcHHHHHHHHHHHHhhhhhh
Confidence            899999999999999999999999999988665443

>TIGR02270 conserved hypothetical protein

Probab=92.12  E-value=2.5  Score=42.64  Aligned_cols=116  Identities=18%  Similarity=0.005  Sum_probs=70.7

Q ss_pred             HHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhhhHHHH
Q 020587          125 IPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPILLLPKL  204 (324)
Q Consensus       125 v~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~ll~~L  204 (324)
                      +..++..+.+....|..++...++.+       -++   ...+.|+....+...|++..+-.++.... .-    ..+.+
T Consensus        88 ~~~L~~~L~d~~~~vr~aaa~ALg~i-------~~~---~a~~~L~~~L~~~~p~vR~aal~al~~r~-~~----~~~~L  152 (410)
T TIGR02270        88 LRSVLAVLQAGPEGLCAGIQAALGWL-------GGR---QAEPWLEPLLAASEPPGRAIGLAALGAHR-HD----PGPAL  152 (410)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHhcC-------Cch---HHHHHHHHHhcCCChHHHHHHHHHHHhhc-cC----hHHHH
Confidence            56667777777766766666444432       222   33444445556667788877765555422 11    23345


Q ss_pred             hhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHH
Q 020587          205 QPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLL  267 (324)
Q Consensus       205 ~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~  267 (324)
                      ...++|.++.||+.++..|-.+-.            ...++.+...+.|.+++||..|-..+.
T Consensus       153 ~~~L~d~d~~Vra~A~raLG~l~~------------~~a~~~L~~al~d~~~~VR~aA~~al~  203 (410)
T TIGR02270       153 EAALTHEDALVRAAALRALGELPR------------RLSESTLRLYLRDSDPEVRFAALEAGL  203 (410)
T ss_pred             HHHhcCCCHHHHHHHHHHHHhhcc------------ccchHHHHHHHcCCCHHHHHHHHHHHH
Confidence            555668888898888887754322            112233446689999999999887764

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=92.04  E-value=1.6  Score=47.04  Aligned_cols=94  Identities=17%  Similarity=0.186  Sum_probs=76.1

Q ss_pred             hhhHHHHHHHHccCcchHHHH-HHHHHHHHHHHHhhhhHHhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhh
Q 020587          121 LGDVIPLVVKSLKNPRSAVCK-TAIMTAADIFSAYNDRMIDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPIL  199 (324)
Q Consensus       121 L~~iv~~l~~~vksLRS~Vsk-~A~~tl~dLf~~L~~~m~~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~  199 (324)
                      ++.+.+.+...++|-+|-=+| +++.+++.|+..+|...-||+..++..+=+-..|..+|||..+..||.+..+..+|-.
T Consensus       509 ip~llpfLkavc~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~gl~De~qkVR~itAlalsalaeaa~Pyg  588 (1172)
T KOG0213|consen  509 IPALLPFLKAVCGSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHGLKDEQQKVRTITALALSALAEAATPYG  588 (1172)
T ss_pred             cHHHHHHHHHHhccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhcCCcc
Confidence            345666666667777676665 5677899999999999999999999999999999999999999999999999998854


Q ss_pred             ------hHHHHhhhcc-CCCHH
Q 020587          200 ------LLPKLQPYLK-NRNPR  214 (324)
Q Consensus       200 ------ll~~L~~~~~-hKNp~  214 (324)
                            ++.-|+.+.+ |+...
T Consensus       589 ie~fDsVlkpLwkgir~hrgk~  610 (1172)
T KOG0213|consen  589 IEQFDSVLKPLWKGIRQHRGKE  610 (1172)
T ss_pred             hHHHHHHHHHHHHHHHHccChH
Confidence                  4555777764 66543

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=92.02  E-value=2.1  Score=40.79  Aligned_cols=126  Identities=17%  Similarity=0.154  Sum_probs=94.8

Q ss_pred             HHHHHHHHHhhhhHHh--hHHHHHHHHHHHh-cCChHHHHHHHHHHHHHHHh--hcChhhhHHHHhhhccCCCHHHHHHH
Q 020587          145 MTAADIFSAYNDRMID--LLDPLLVQLLLKS-SQDKRFVCEAAEKALVAMTT--WVSPILLLPKLQPYLKNRNPRIRAKA  219 (324)
Q Consensus       145 ~tl~dLf~~L~~~m~~--~~d~ll~~LL~Ka-~~sk~FI~e~A~~AL~amv~--~vs~~~ll~~L~~~~~hKNp~VR~~a  219 (324)
                      ..++.|.+.....+.+  .++.++..|+..+ .....-||+.|-+||...+-  .-....-++.+...++.-...||..+
T Consensus         5 ~i~~~lL~~~~~~~~~~~~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~~~a   84 (298)
T PF12719_consen    5 SITQSLLENVSSSLSPNISLESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVKITA   84 (298)
T ss_pred             HHHHHHHHhccccCCCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence            3455666666656665  4558888888775 44567999999999875443  32334456666666666689999999


Q ss_pred             HHHHHhhcccccccchhhc-------cHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 020587          220 SMCFSRSVPRLGVEGIKEY-------GIDKLIQVAASQLSDQLPESREAARTLLLELQ  270 (324)
Q Consensus       220 a~~L~~~v~~~g~~~i~~~-------~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~  270 (324)
                      .+.+..++-..|...+...       +...+++.+.+++.+.++++|..|-..+..|.
T Consensus        85 l~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLl  142 (298)
T PF12719_consen   85 LKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLL  142 (298)
T ss_pred             HHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence            9999999999888744433       25789999999999999999999999998654

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.01  E-value=5.7  Score=41.16  Aligned_cols=186  Identities=17%  Similarity=0.047  Sum_probs=126.1

Q ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHHHHh--HcHHHHHHhhhhHHHHHHHHcc-CcchHHHHHHHHHHHHHHHHhhhhHHh
Q 020587           84 VKTLVAGLDSKDWVVVCEALNNVRRLSI--FHKEAMLDILGDVIPLVVKSLK-NPRSAVCKTAIMTAADIFSAYNDRMID  160 (324)
Q Consensus        84 L~~~l~~L~s~dW~~r~eaL~~LRrLa~--~h~~~l~~~L~~iv~~l~~~vk-sLRS~Vsk~A~~tl~dLf~~L~~~m~~  160 (324)
                      ....+..+.|.|=+.++++...+|++..  .||.+-...-..+++.++..++ +-.-.+--+|.=++..|+..--..-.-
T Consensus        68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~  147 (514)
T KOG0166|consen   68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKV  147 (514)
T ss_pred             hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccc
Confidence            4566777788999999999999999865  3343332222356677777775 444566778888888888765544444


Q ss_pred             hHH-HHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhh--hH-----HHHhhhccCCC-HHHHHHHHHHHHhhccccc
Q 020587          161 LLD-PLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPIL--LL-----PKLQPYLKNRN-PRIRAKASMCFSRSVPRLG  231 (324)
Q Consensus       161 ~~d-~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~--ll-----~~L~~~~~hKN-p~VR~~aa~~L~~~v~~~g  231 (324)
                      .++ ..++.|+........-|+|.|-.||.-+.-..+.-|  ++     +-|...+.... -...+.+.-.|.+++..-.
T Consensus       148 vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~  227 (514)
T KOG0166|consen  148 VVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKN  227 (514)
T ss_pred             cccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCC
Confidence            443 466677777888899999999999998776665544  22     22333333322 3577777778888887543


Q ss_pred             ccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 020587          232 VEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQ  270 (324)
Q Consensus       232 ~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~  270 (324)
                      +..-. -.+..+++++..+|...+++|..-|--++..|.
T Consensus       228 P~P~~-~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLs  265 (514)
T KOG0166|consen  228 PSPPF-DVVAPILPALLRLLHSTDEEVLTDACWALSYLT  265 (514)
T ss_pred             CCCcH-HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence            32111 248899999999999999999976655554443

>KOG2149 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.82  E-value=3.4  Score=41.36  Aligned_cols=118  Identities=14%  Similarity=0.088  Sum_probs=94.9

Q ss_pred             HHHHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhh-hhHHh
Q 020587           82 TSVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYN-DRMID  160 (324)
Q Consensus        82 ~~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~-~~m~~  160 (324)
                      ..+++++.+++..+=+.|-+||..++.+...||+.+...+-.++..+...+.|--+.|-....+++..+....+ ..+.|
T Consensus        58 ltlkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp  137 (393)
T KOG2149|consen   58 LTLKELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSP  137 (393)
T ss_pred             ccHHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcc
Confidence            46889999999999999999999999999999999999999999999998888777777777766666444443 33577


Q ss_pred             hHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhh
Q 020587          161 LLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPIL  199 (324)
Q Consensus       161 ~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~  199 (324)
                      ++..+++-+..-+-....-|++++...|...+..++|.=
T Consensus       138 ~~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~  176 (393)
T KOG2149|consen  138 MVSLLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTF  176 (393)
T ss_pred             hHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHH
Confidence            877777777766666677888888888888888886644

>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter

Probab=91.76  E-value=1.8  Score=39.03  Aligned_cols=115  Identities=12%  Similarity=0.066  Sum_probs=85.1

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhhhHHH-------HhhhccCCCHHHHHHHHHHHHhh---ccccc
Q 020587          162 LDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPILLLPK-------LQPYLKNRNPRIRAKASMCFSRS---VPRLG  231 (324)
Q Consensus       162 ~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~ll~~-------L~~~~~hKNp~VR~~aa~~L~~~---v~~~g  231 (324)
                      ++.+++.++.=+.++..-.+--|......|+++....+++|.       |..++.+||+.|...+..+|..+   -+.+|
T Consensus        36 y~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG  115 (183)
T PF10274_consen   36 YHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVG  115 (183)
T ss_pred             hhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhh
Confidence            567888888888887666666777788888888777776652       44888999999999999998888   44555


Q ss_pred             ccchhhccHHHHHHHHHHhccC-----------CCHHHHHHHHHHHHHHHHHhhhcCC
Q 020587          232 VEGIKEYGIDKLIQVAASQLSD-----------QLPESREAARTLLLELQSVYEKSHD  278 (324)
Q Consensus       232 ~~~i~~~~~~~ll~~l~~~L~D-----------~~pEvR~~AR~~l~~L~~~~~~~a~  278 (324)
                      .. +..+ ...|++.+..|.+.           .....++....++..|.+..+++|+
T Consensus       116 ~a-LvPy-yrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~dA~  171 (183)
T PF10274_consen  116 EA-LVPY-YRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGPDAF  171 (183)
T ss_pred             HH-HHHH-HHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcChhHH
Confidence            43 5555 67778877754443           3467778888888888888877664

The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II

Probab=91.76  E-value=5.6  Score=37.65  Aligned_cols=159  Identities=11%  Similarity=0.184  Sum_probs=101.8

Q ss_pred             HHHHHHhhcCCC--CHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHcc---CcchHHHHHHHHHHHHHHHHhhhh
Q 020587           83 SVKTLVAGLDSK--DWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLK---NPRSAVCKTAIMTAADIFSAYNDR  157 (324)
Q Consensus        83 ~L~~~l~~L~s~--dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vk---sLRS~Vsk~A~~tl~dLf~~L~~~  157 (324)
                      .++.++....-.  -=..|...++.+..|..+|.+.+...=.+++..++..+.   |+|-      ++-+=+|+..+...
T Consensus        81 i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRn------Ll~~F~l~~~i~~~  154 (262)
T PF14500_consen   81 ILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRN------LLLSFKLLKVILQE  154 (262)
T ss_pred             HHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHH------HHHHHHHHHHHHHh
Confidence            444555444322  233477777777777777776664433445666666554   7873      23333444444333


Q ss_pred             H--HhhHHHHHHHHH-------H-HhcCChHHHHHHHHHHHHHHHhhcCh--hhhHHHHhhhccCCCHHHHHHHHHHHHh
Q 020587          158 M--IDLLDPLLVQLL-------L-KSSQDKRFVCEAAEKALVAMTTWVSP--ILLLPKLQPYLKNRNPRIRAKASMCFSR  225 (324)
Q Consensus       158 m--~~~~d~ll~~LL-------~-Ka~~sk~FI~e~A~~AL~amv~~vs~--~~ll~~L~~~~~hKNp~VR~~aa~~L~~  225 (324)
                      +  .++.+.+...+.       . ..++...+-+++-..+|...+.+.+.  ..++|.|..-+.+-++.++.-+...|..
T Consensus       155 ~~~~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~  234 (262)
T PF14500_consen  155 FDISEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFAPFAFPLLLEKLDSTSPSVKLDSLQTLKA  234 (262)
T ss_pred             cccchhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence            3  344555555553       2 23455678889999998887765433  3488999999988899999999999999


Q ss_pred             hcccccccchhhccHHHHHHHHH
Q 020587          226 SVPRLGVEGIKEYGIDKLIQVAA  248 (324)
Q Consensus       226 ~v~~~g~~~i~~~~~~~ll~~l~  248 (324)
                      |++..|...+..+ ...+-.++.
T Consensus       235 c~~~y~~~~~~~~-~~~iw~~lk  256 (262)
T PF14500_consen  235 CIENYGADSLSPH-WSTIWNALK  256 (262)
T ss_pred             HHHHCCHHHHHHH-HHHHHHHHH
Confidence            9999998766655 455554443

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.22  E-value=16  Score=40.11  Aligned_cols=196  Identities=15%  Similarity=0.062  Sum_probs=121.7

Q ss_pred             CCHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHc-cCcchHHHHHHHHHHHHHHHHhhh
Q 020587           78 EDIDTSVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSL-KNPRSAVCKTAIMTAADIFSAYND  156 (324)
Q Consensus        78 ~dpe~~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~v-ksLRS~Vsk~A~~tl~dLf~~L~~  156 (324)
                      ..++..++-+++.|.++|=-.-..+++-+-.|+.-.|+-+.+.+-+-...-.+.. -+-|=.|-    ..+..+...+|.
T Consensus       764 ~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~il~dL~e~Y~s~k~k~~~d~~lkVG----Eai~k~~qa~Ge  839 (982)
T KOG4653|consen  764 IQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPEDILPDLSEEYLSEKKKLQTDYRLKVG----EAILKVAQALGE  839 (982)
T ss_pred             hhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchhhHHHHHHHHHhcccCCCccceehHH----HHHHHHHHHhcc
Confidence            3455566677777777776666666666667766566655444433322222211 13333333    445566777787


Q ss_pred             hHHhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcC------hhhhHHHHh-hhccCCCHHHHHHHHHHHHhhccc
Q 020587          157 RMIDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVS------PILLLPKLQ-PYLKNRNPRIRAKASMCFSRSVPR  229 (324)
Q Consensus       157 ~m~~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs------~~~ll~~L~-~~~~hKNp~VR~~aa~~L~~~v~~  229 (324)
                      -+..|.+.++...|.-.-+.-...|..+-..|.-.++-..      -..++..|. -.-...++.||+.++..+..++.-
T Consensus       840 l~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~  919 (982)
T KOG4653|consen  840 LVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNG  919 (982)
T ss_pred             HHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhc
Confidence            7788888888888877766545556777777776666554      122444333 334589999999999999999998


Q ss_pred             ccccchhhccHH---HHHHHHHHhc-cCCCHHHHHHHHHHHHHHHHHhhhcCC
Q 020587          230 LGVEGIKEYGID---KLIQVAASQL-SDQLPESREAARTLLLELQSVYEKSHD  278 (324)
Q Consensus       230 ~g~~~i~~~~~~---~ll~~l~~~L-~D~~pEvR~~AR~~l~~L~~~~~~~a~  278 (324)
                      +|.. +...-+.   -+...+...+ .+..-.+|.+|..++..+..+....-|
T Consensus       920 tg~d-lLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei~a~l~n~~~  971 (982)
T KOG4653|consen  920 TGED-LLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEIQAALENDDD  971 (982)
T ss_pred             cchh-hHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHhccc
Confidence            8754 3222111   1122222222 466677999999999988888875554

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.21  E-value=0.63  Score=49.99  Aligned_cols=97  Identities=21%  Similarity=0.188  Sum_probs=65.6

Q ss_pred             HHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHHHH-hcCChHHHHHHHHHHHHHHHhhcChhhhHHHHhhh
Q 020587          129 VKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLLK-SSQDKRFVCEAAEKALVAMTTWVSPILLLPKLQPY  207 (324)
Q Consensus       129 ~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d~ll~~LL~K-a~~sk~FI~e~A~~AL~amv~~vs~~~ll~~L~~~  207 (324)
                      +|.+.+.|-.--|.     |+|...|=-+=.+++-.++.-.|++ ...+|+||.-.|-.||..|+..=-...+.|.+-.-
T Consensus        76 lKLias~~f~dKRi-----GYLaamLlLdE~qdvllLltNslknDL~s~nq~vVglAL~alg~i~s~EmardlapeVe~L  150 (866)
T KOG1062|consen   76 LKLIASDNFLDKRI-----GYLAAMLLLDERQDLLLLLTNSLKNDLNSSNQYVVGLALCALGNICSPEMARDLAPEVERL  150 (866)
T ss_pred             HHHhcCCCchHHHH-----HHHHHHHHhccchHHHHHHHHHHHhhccCCCeeehHHHHHHhhccCCHHHhHHhhHHHHHH
Confidence            45566666555554     3444333222234455555555555 67789999888777777655443344577778888


Q ss_pred             ccCCCHHHHHHHHHHHHhhcccc
Q 020587          208 LKNRNPRIRAKASMCFSRSVPRL  230 (324)
Q Consensus       208 ~~hKNp~VR~~aa~~L~~~v~~~  230 (324)
                      ++|++|-||.+++.|..+.+.+.
T Consensus       151 l~~~~~~irKKA~Lca~r~irK~  173 (866)
T KOG1062|consen  151 LQHRDPYIRKKAALCAVRFIRKV  173 (866)
T ss_pred             HhCCCHHHHHHHHHHHHHHHHcC
Confidence            99999999999999999999875

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=90.72  E-value=9.5  Score=38.12  Aligned_cols=122  Identities=16%  Similarity=0.126  Sum_probs=86.1

Q ss_pred             HHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhH-------------HhhHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 020587          124 VIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRM-------------IDLLDPLLVQLLLKSSQDKRFVCEAAEKALVA  190 (324)
Q Consensus       124 iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m-------------~~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~a  190 (324)
                      ++..++..+.+  ..+...|...++-|+.-...-+             .+++..++|.|+.+..+...-++...-.||-.
T Consensus       272 ~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~  349 (415)
T PF12460_consen  272 LLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSH  349 (415)
T ss_pred             HHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHH
Confidence            33445555555  4555666555555544422111             35688999999999887766688888999999


Q ss_pred             HHhhcChh-------hhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHH
Q 020587          191 MTTWVSPI-------LLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAAS  249 (324)
Q Consensus       191 mv~~vs~~-------~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~  249 (324)
                      ++.+++..       .++|.|..++...|+.+|..+...|..+++.- ++-+.+ .++.+++.+.+
T Consensus       350 ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~-~~~i~~-hl~sLI~~LL~  413 (415)
T PF12460_consen  350 LLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA-PELISE-HLSSLIPRLLK  413 (415)
T ss_pred             HHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC-HHHHHH-HHHHHHHHHHh
Confidence            99999873       47778889999999999999999999988864 332333 36666665543

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>smart00288 VHS Domain present in VPS-27, Hrs and STAM

Probab=90.68  E-value=1.1  Score=37.79  Aligned_cols=80  Identities=16%  Similarity=0.216  Sum_probs=64.1

Q ss_pred             ChhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccCCC--HHHHHHHHHHHHHHHHHh
Q 020587          196 SPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQL--PESREAARTLLLELQSVY  273 (324)
Q Consensus       196 s~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~--pEvR~~AR~~l~~L~~~~  273 (324)
                      .+...+..|..-++|+||.+...+..+|..|+++-|..-.....-..+++.+.+.+.+..  ++||+....++......|
T Consensus        34 ~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f  113 (133)
T smart00288       34 GPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAF  113 (133)
T ss_pred             cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHH
Confidence            355577889999999999999999999999999988864444566778888888888765  448888888888777777


Q ss_pred             hh
Q 020587          274 EK  275 (324)
Q Consensus       274 ~~  275 (324)
                      ..
T Consensus       114 ~~  115 (133)
T smart00288      114 KN  115 (133)
T ss_pred             cC
Confidence            54

Unpublished observations. Domain of unknown function.

>TIGR02270 conserved hypothetical protein

Probab=90.59  E-value=4.8  Score=40.59  Aligned_cols=88  Identities=23%  Similarity=0.207  Sum_probs=68.0

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHHHHH
Q 020587          166 LVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQ  245 (324)
Q Consensus       166 l~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~  245 (324)
                      +..|+..+.+....++.++..+|.    .+....+.+.|...++|.+|.||..+...+..    .+..         -.+
T Consensus        88 ~~~L~~~L~d~~~~vr~aaa~ALg----~i~~~~a~~~L~~~L~~~~p~vR~aal~al~~----r~~~---------~~~  150 (410)
T TIGR02270        88 LRSVLAVLQAGPEGLCAGIQAALG----WLGGRQAEPWLEPLLAASEPPGRAIGLAALGA----HRHD---------PGP  150 (410)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHh----cCCchHHHHHHHHHhcCCChHHHHHHHHHHHh----hccC---------hHH
Confidence            677777777878889999999986    47778888899999999999999877655443    1111         234


Q ss_pred             HHHHhccCCCHHHHHHHHHHHHHHH
Q 020587          246 VAASQLSDQLPESREAARTLLLELQ  270 (324)
Q Consensus       246 ~l~~~L~D~~pEvR~~AR~~l~~L~  270 (324)
                      .+..+|+|.++.||..|-+++..+.
T Consensus       151 ~L~~~L~d~d~~Vra~A~raLG~l~  175 (410)
T TIGR02270       151 ALEAALTHEDALVRAAALRALGELP  175 (410)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHhhc
Confidence            5667788999999999999997554

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=90.40  E-value=21  Score=35.73  Aligned_cols=188  Identities=19%  Similarity=0.112  Sum_probs=129.5

Q ss_pred             CHHHHHHHHHhhc-CCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHc-cCcchHHHHHHHHHHHHHHHHhhh
Q 020587           79 DIDTSVKTLVAGL-DSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSL-KNPRSAVCKTAIMTAADIFSAYND  156 (324)
Q Consensus        79 dpe~~L~~~l~~L-~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~v-ksLRS~Vsk~A~~tl~dLf~~L~~  156 (324)
                      +.+..+..++... .+.++..+.-++..+-.|+-.+++.  ..+.+++..+...+ .+-.+.....++..+.=+.++|=-
T Consensus       186 ~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~--~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~  263 (415)
T PF12460_consen  186 DLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDD--DDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVM  263 (415)
T ss_pred             CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCh--hhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHH
Confidence            5555666666664 3456777888888777776543211  13444444444444 566677777888888888888765


Q ss_pred             hHHhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcC---------------hhh----hHHHHhhhccCCCHHHHH
Q 020587          157 RMIDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVS---------------PIL----LLPKLQPYLKNRNPRIRA  217 (324)
Q Consensus       157 ~m~~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs---------------~~~----ll~~L~~~~~hKNp~VR~  217 (324)
                      .-+|....++..|+...++  .-+...+.+++..++.-..               -+|    ++|.|..+.+.-+..+|.
T Consensus       264 R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~  341 (415)
T PF12460_consen  264 RGHPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKS  341 (415)
T ss_pred             cCCchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHH
Confidence            5578888888888888877  4456666667665554411               122    566777777666666788


Q ss_pred             HHHHHHHhhcccccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 020587          218 KASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQS  271 (324)
Q Consensus       218 ~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~  271 (324)
                      .-...|..+++.+... +....++.+++.+.+.|.=.++++|.++-.++..+..
T Consensus       342 ~yL~ALs~ll~~vP~~-vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~  394 (415)
T PF12460_consen  342 NYLTALSHLLKNVPKS-VLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILE  394 (415)
T ss_pred             HHHHHHHHHHhhCCHH-HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            8888888888877544 5445699999999999999999999998888865443

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=90.39  E-value=24  Score=40.75  Aligned_cols=214  Identities=16%  Similarity=0.091  Sum_probs=144.8

Q ss_pred             cccceeccCCCCCCCCCHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhH-cHHHHHHhhhhHHHHHHHHccCcchHHHH
Q 020587           63 NSEVEYIDSENLIDVEDIDTSVKTLVAGLDSKDWVVVCEALNNVRRLSIF-HKEAMLDILGDVIPLVVKSLKNPRSAVCK  141 (324)
Q Consensus        63 ~~~~~yi~~eeL~pl~dpe~~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~-h~~~l~~~L~~iv~~l~~~vksLRS~Vsk  141 (324)
                      ..+..|.+..+-.-+.+.+..+..++..|...|=..++.||..+-.+... ..+.+.+.++.....+.+.+.|--=.|=.
T Consensus        22 ~~~~n~~~~~~~~~~~~~dsel~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~  101 (1312)
T KOG0803|consen   22 SASINSASSNPDPFVLELDSELDIIVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRL  101 (1312)
T ss_pred             cccccccccCCChHHhccCHHHHHHHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHH
Confidence            34444555443333445667799999999999999999999999999653 23445455777777778888887777777


Q ss_pred             HHHHHHHHHHHHhhhhHHhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH---------hhcChh--------------
Q 020587          142 TAIMTAADIFSAYNDRMIDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMT---------TWVSPI--------------  198 (324)
Q Consensus       142 ~A~~tl~dLf~~L~~~m~~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv---------~~vs~~--------------  198 (324)
                      .....+..+...+++.+.||+..+++..+--..+.-.-++..|-.+.....         ..|.+.              
T Consensus       102 ~t~~v~s~l~t~lkk~lsp~LK~li~~wl~~~~d~~~~vs~aa~~sf~~~f~~ek~~~v~~~c~~~i~~~~~~~~~~~~~  181 (1312)
T KOG0803|consen  102 LTHDVFSKLLTKLKKKLSPFLKSLIPPWLGGQFDLDYPVSEAAKASFKDGFAEEKDRHVWFKCDPEIFYLVTEILVKETP  181 (1312)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHhhhhhhhheecccchHHHHHHHHHHHhhcChhhhHHHHHHhhHHHHHHHHHHHhccCc
Confidence            777888889999999999999999999885555544444444444333211         111110              


Q ss_pred             hhHH---HH-hhhccCCCHHHHHHHHHHHHhhcccccccchhh-----ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 020587          199 LLLP---KL-QPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKE-----YGIDKLIQVAASQLSDQLPESREAARTLLLEL  269 (324)
Q Consensus       199 ~ll~---~L-~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~-----~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L  269 (324)
                      .-++   .+ ...+..|.++|-+.+..++..++...|...-..     ...-.-.+..-+++.+.+|.+|.+...++..+
T Consensus       182 ~slSd~~~~s~Ee~E~k~~Rvi~ssLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l  261 (1312)
T KOG0803|consen  182 DSLSDLRTLSSEELESKYQRVISSSLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSL  261 (1312)
T ss_pred             cccchhhhcchHHHHHhhHHHHHHHHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHH
Confidence            0111   12 245556778888888888888887766653322     12333456778899999999999999999877


Q ss_pred             HHHhhhc
Q 020587          270 QSVYEKS  276 (324)
Q Consensus       270 ~~~~~~~  276 (324)
                      .+-....
T Consensus       262 ~~~i~~~  268 (1312)
T KOG0803|consen  262 IDDILNR  268 (1312)
T ss_pred             HhhhHHh
Confidence            6555444

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=90.02  E-value=29  Score=36.83  Aligned_cols=189  Identities=16%  Similarity=0.168  Sum_probs=104.9

Q ss_pred             HHHHHhhcCCC----CHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHH
Q 020587           84 VKTLVAGLDSK----DWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMI  159 (324)
Q Consensus        84 L~~~l~~L~s~----dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~  159 (324)
                      +.-++..|.+.    -..+.+.|+..+.   ..-.+.+......+++-+.+.++-.-+.|+-.|+-.++||+.+|+.+|.
T Consensus       599 m~Lf~r~les~~~t~~~~dV~~aIsal~---~sl~e~Fe~y~~~fiPyl~~aln~~d~~v~~~avglvgdlantl~~df~  675 (858)
T COG5215         599 MELFIRILESTKPTTAFGDVYTAISALS---TSLEERFEQYASKFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGTDFN  675 (858)
T ss_pred             HHHHHHHHhccCCchhhhHHHHHHHHHH---HHHHHHHHHHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhHH
Confidence            34444445443    2344444444332   2123344456777888889999889999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHhcCCh-------HHHHHHHHHHHHHHHhhcChhhhHHHHhhhccC---CC-----HHHHHHHHHHHH
Q 020587          160 DLLDPLLVQLLLKSSQDK-------RFVCEAAEKALVAMTTWVSPILLLPKLQPYLKN---RN-----PRIRAKASMCFS  224 (324)
Q Consensus       160 ~~~d~ll~~LL~Ka~~sk-------~FI~e~A~~AL~amv~~vs~~~ll~~L~~~~~h---KN-----p~VR~~aa~~L~  224 (324)
                      +|.|.++..|....++.+       .++.-=.+-||..=....++-..+-.|....++   .|     -..|.++...+.
T Consensus       676 ~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga~F~~YL~~im~L~qqas~~~p~~~~~~~~dy~~~~~~~v~  755 (858)
T COG5215         676 IYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIALAIGANFESYLDMIMMLFQQASELDPHSDEVYVDDYRKNAVQLVN  755 (858)
T ss_pred             HHHHHHHHHHHHHhcChhhccccchHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCCceeHHHHHHHHHHHHH
Confidence            999999999998887642       133333333333222223343433333322221   11     134444444443


Q ss_pred             hhccccccc------chhhccHHHHHHHHHHhccCCCH-HHHH-HHHHHHHHHHHHhhhc
Q 020587          225 RSVPRLGVE------GIKEYGIDKLIQVAASQLSDQLP-ESRE-AARTLLLELQSVYEKS  276 (324)
Q Consensus       225 ~~v~~~g~~------~i~~~~~~~ll~~l~~~L~D~~p-EvR~-~AR~~l~~L~~~~~~~  276 (324)
                      ...--+|..      .+..+ .-.+..-+.....|++. |.-. +|-.++.-|-..|++.
T Consensus       756 ~ayVgI~~~~~nr~~~v~Py-v~sif~~i~~iaeDp~~se~~traalGLigDla~mfpkg  814 (858)
T COG5215         756 CAYVGIGDSSKNRVRSVLPY-VISIFHKIGMIAEDPNGSEAHTRAALGLIGDLAGMFPKG  814 (858)
T ss_pred             HHHHHhhhhhhhhHHHhhhH-HHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHhCCCc
Confidence            333323322      11222 34444455555567665 2222 3444455566677755

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=89.74  E-value=13  Score=40.20  Aligned_cols=136  Identities=21%  Similarity=0.173  Sum_probs=96.9

Q ss_pred             hhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHHHH-hcCChHHHHHHHHHHHHHHHhhcChh
Q 020587          120 ILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLLK-SSQDKRFVCEAAEKALVAMTTWVSPI  198 (324)
Q Consensus       120 ~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d~ll~~LL~K-a~~sk~FI~e~A~~AL~amv~~vs~~  198 (324)
                      ..++.-+.|.+.+.+..+.+=..++.+++--|.+-|+.      ..+..||+- .+|.|.=||.+|-.||..++-. .|.
T Consensus       516 rqe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgnn------kair~lLh~aVsD~nDDVrRaAVialGFVl~~-dp~  588 (929)
T KOG2062|consen  516 RQEDADPLIKELLRDKDPILRYGGMYTLALAYVGTGNN------KAIRRLLHVAVSDVNDDVRRAAVIALGFVLFR-DPE  588 (929)
T ss_pred             hhhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCch------hhHHHhhcccccccchHHHHHHHHHheeeEec-Chh
Confidence            34444455555666777777777777666555555432      467788888 4788999999999999886543 445


Q ss_pred             hhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 020587          199 LLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQ  270 (324)
Q Consensus       199 ~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~  270 (324)
                      .+...+..-..|-||-||..+|..|-.++...|.        ...+..+-.+..|...-||+.|--++.+.+
T Consensus       589 ~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~--------~eAi~lLepl~~D~~~fVRQgAlIa~amIm  652 (929)
T KOG2062|consen  589 QLPSTVSLLSESYNPHVRYGAAMALGIACAGTGL--------KEAINLLEPLTSDPVDFVRQGALIALAMIM  652 (929)
T ss_pred             hchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCc--------HHHHHHHhhhhcChHHHHHHHHHHHHHHHH
Confidence            5555556666789999999999999888775443        445556666778999999999988887554

>PF13251 DUF4042: Domain of unknown function (DUF4042)

Probab=89.53  E-value=4.2  Score=36.53  Aligned_cols=162  Identities=18%  Similarity=0.183  Sum_probs=105.6

Q ss_pred             HHHHHHHHHHHHHhH-cHHHHHHhhhhHH------------HHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhHHH
Q 020587           98 VVCEALNNVRRLSIF-HKEAMLDILGDVI------------PLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDP  164 (324)
Q Consensus        98 ~r~eaL~~LRrLa~~-h~~~l~~~L~~iv------------~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d~  164 (324)
                      -|..||..|..++++ .+..+.+.++.+.            ..+.-.++|+-..|=-.|+.+++.|+.+.+.-+.. ++.
T Consensus         2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~-Ae~   80 (182)
T PF13251_consen    2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQ-AEE   80 (182)
T ss_pred             hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHH-HHh
Confidence            478899999999887 4444443333222            23445667888888889999999998886433221 111


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhhhHHHHhhhc-cCCCHHHHHHHHHHHHhhcccccccchhhccHHHH
Q 020587          165 LLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPILLLPKLQPYL-KNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKL  243 (324)
Q Consensus       165 ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~ll~~L~~~~-~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~l  243 (324)
                      .-       +....|+.=...  |..|+..++     ..|...+ ..+++.+-..+.+|+..++....=+++...-+..+
T Consensus        81 ~~-------~~~~sFtslS~t--La~~i~~lH-----~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~  146 (182)
T PF13251_consen   81 SK-------GPSGSFTSLSST--LASMIMELH-----RGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEV  146 (182)
T ss_pred             cC-------CCCCCcccHHHH--HHHHHHHHH-----HHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHH
Confidence            00       122245443332  333333211     1233333 46788888899999999998755455554448899


Q ss_pred             HHHHHHhccCCCHHHHHHHHHHHHHHHHHhh
Q 020587          244 IQVAASQLSDQLPESREAARTLLLELQSVYE  274 (324)
Q Consensus       244 l~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~  274 (324)
                      +..+..++...++++|.++--++..+....+
T Consensus       147 v~~v~~~l~~~d~~v~v~~l~~~~~l~s~~~  177 (182)
T PF13251_consen  147 VTQVRPLLRHRDPNVRVAALSCLGALLSVQP  177 (182)
T ss_pred             HHHHHHHHhcCCCcHHHHHHHHHHHHHcCCC
Confidence            9999999999999999999988887776554

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=89.52  E-value=19  Score=33.96  Aligned_cols=172  Identities=16%  Similarity=0.096  Sum_probs=100.0

Q ss_pred             HHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHc--cCcchHHHHHHHHHHHHHHHHhhhhHHhhHH
Q 020587           86 TLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSL--KNPRSAVCKTAIMTAADIFSAYNDRMIDLLD  163 (324)
Q Consensus        86 ~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~v--ksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d  163 (324)
                      -+...|++++=..+..||+.+--++.......  .+...+..|.+.+  ..+.|.+-..|+..+..|...  ++....+-
T Consensus        58 lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~--~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~--~~~~~~l~  133 (254)
T PF04826_consen   58 LIGSLLNDPNPSVREKALNALNNLSVNDENQE--QIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVT--NDYHHMLA  133 (254)
T ss_pred             HHHHHcCCCChHHHHHHHHHHHhcCCChhhHH--HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCC--cchhhhHH
Confidence            44455667776777888888888766432221  2333344444432  247889988999888888432  32233344


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhh-hH-----HHHhhhcc-CCCHHHHHHHHHHHHhhcccccccchh
Q 020587          164 PLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPIL-LL-----PKLQPYLK-NRNPRIRAKASMCFSRSVPRLGVEGIK  236 (324)
Q Consensus       164 ~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~-ll-----~~L~~~~~-hKNp~VR~~aa~~L~~~v~~~g~~~i~  236 (324)
                      ..++.|+......+.-++..+-++|--+..+-...+ ++     ..+..-+. +-+..+...+..++.++-+.+..+...
T Consensus       134 ~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~  213 (254)
T PF04826_consen  134 NYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYV  213 (254)
T ss_pred             hhHHHHHHHHHcCChHHHHHHHHHHHHhccCHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccce
Confidence            455666655555556677777777665544433211 22     22322222 335666666767777666655444211


Q ss_pred             --------------hccHHHHHHHHHHhccCCCHHHHHH
Q 020587          237 --------------EYGIDKLIQVAASQLSDQLPESREA  261 (324)
Q Consensus       237 --------------~~~~~~ll~~l~~~L~D~~pEvR~~  261 (324)
                                    .++.+.+.+-+..++...++|||+.
T Consensus       214 ~~~~~~~~~~L~~~~~e~~~~~~~l~~l~~h~d~ev~~~  252 (254)
T PF04826_consen  214 FVQDDFSEDSLFSLFGESSQLAKKLQALANHPDPEVKEQ  252 (254)
T ss_pred             eccccCCchhHHHHHccHHHHHHHHHHHHcCCCHHHhhh
Confidence                          1256778888888888888888864

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.20  E-value=13  Score=40.34  Aligned_cols=171  Identities=19%  Similarity=0.182  Sum_probs=96.6

Q ss_pred             cCCCCHHHHHHHHHHHHHHHhHcHHHHHH----------------------------------hhhhHHHHHHHHccCcc
Q 020587           91 LDSKDWVVVCEALNNVRRLSIFHKEAMLD----------------------------------ILGDVIPLVVKSLKNPR  136 (324)
Q Consensus        91 L~s~dW~~r~eaL~~LRrLa~~h~~~l~~----------------------------------~L~~iv~~l~~~vksLR  136 (324)
                      +++.+=..|+.|+..|-++|..||.....                                  .|-..+...+-.|.+=-
T Consensus       291 lssp~~~lRfaAvRtLnkvAm~~P~~v~~cN~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeF  370 (865)
T KOG1078|consen  291 LSSPKVALRFAAVRTLNKVAMKHPQAVTVCNLDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEF  370 (865)
T ss_pred             hcCcHHHHHHHHHHHHHHHHHhCCccccccchhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccc
Confidence            35778888999999999999988753321                                  01111222233334444


Q ss_pred             hHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHHHHhcC-ChHHHHH-----------HHHHHHHHH---HhhcChhh--
Q 020587          137 SAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLLKSSQ-DKRFVCE-----------AAEKALVAM---TTWVSPIL--  199 (324)
Q Consensus       137 S~Vsk~A~~tl~dLf~~L~~~m~~~~d~ll~~LL~Ka~~-sk~FI~e-----------~A~~AL~am---v~~vs~~~--  199 (324)
                      -.|+-+|+.++.-.|......|..+++.++..   ..+- -|+-+-+           .=+..|...   ++.|-...  
T Consensus       371 Kivvvdai~sLc~~fp~k~~~~m~FL~~~Lr~---eGg~e~K~aivd~Ii~iie~~pdsKe~~L~~LCefIEDce~~~i~  447 (865)
T KOG1078|consen  371 KIVVVDAIRSLCLKFPRKHTVMMNFLSNMLRE---EGGFEFKRAIVDAIIDIIEENPDSKERGLEHLCEFIEDCEFTQIA  447 (865)
T ss_pred             eEEeHHHHHHHHhhccHHHHHHHHHHHHHHHh---ccCchHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHhccchHHH
Confidence            45556677777777777777776666655443   1111 1211111           111222222   22232222  


Q ss_pred             --hHHHHh-hhccC----------------CCHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccCCCHHHHH
Q 020587          200 --LLPKLQ-PYLKN----------------RNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESRE  260 (324)
Q Consensus       200 --ll~~L~-~~~~h----------------KNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~  260 (324)
                        ++..|- .|-+.                -|..||+.+..+|...-  .+.+.+    ...+.-.+.+++.|++-|+|+
T Consensus       448 ~rILhlLG~EgP~a~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg--~~~~~l----~~sI~vllkRc~~D~DdevRd  521 (865)
T KOG1078|consen  448 VRILHLLGKEGPKAPNPSKYIRFIYNRVILENAIVRAAAVSALAKFG--AQDVVL----LPSILVLLKRCLNDSDDEVRD  521 (865)
T ss_pred             HHHHHHHhccCCCCCCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHh--cCCCCc----cccHHHHHHHHhcCchHHHHH
Confidence              222221 23232                34567777777766655  222222    566777889999999999999


Q ss_pred             HHHHHHHHHH
Q 020587          261 AARTLLLELQ  270 (324)
Q Consensus       261 ~AR~~l~~L~  270 (324)
                      .|+-.+..+.
T Consensus       522 rAtf~l~~l~  531 (865)
T KOG1078|consen  522 RATFYLKNLE  531 (865)
T ss_pred             HHHHHHHHhh
Confidence            9999988777

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=88.97  E-value=10  Score=40.87  Aligned_cols=169  Identities=19%  Similarity=0.151  Sum_probs=112.0

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhH
Q 020587           83 SVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLL  162 (324)
Q Consensus        83 ~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~  162 (324)
                      .+..++.+.+++|=..|+..|..|++|.-...+.=...+..+...+...++|--+.|=.+|..+++.+=   ++.-++.+
T Consensus        86 ~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ---~d~~dee~  162 (892)
T KOG2025|consen   86 TFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQ---GDPKDEEC  162 (892)
T ss_pred             HHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHh---cCCCCCcc
Confidence            356777778899999999999999999763322222335556677788888888999999998876553   24455555


Q ss_pred             HHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHhhcChhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHH
Q 020587          163 DPLLVQLLLKSSQD-KRFVCEAAEKALVAMTTWVSPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGID  241 (324)
Q Consensus       163 d~ll~~LL~Ka~~s-k~FI~e~A~~AL~amv~~vs~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~  241 (324)
                      + ++..|..-..++ +.=||    ++.-.++  ...+.-+|.|..-..+-+..+|+.+-.   +|+++++   +.....+
T Consensus       163 ~-v~n~l~~liqnDpS~EVR----RaaLsnI--~vdnsTlp~IveRarDV~~anRrlvY~---r~lpkid---~r~lsi~  229 (892)
T KOG2025|consen  163 P-VVNLLKDLIQNDPSDEVR----RAALSNI--SVDNSTLPCIVERARDVSGANRRLVYE---RCLPKID---LRSLSID  229 (892)
T ss_pred             c-HHHHHHHHHhcCCcHHHH----HHHHHhh--ccCcccchhHHHHhhhhhHHHHHHHHH---Hhhhhhh---hhhhhHH
Confidence            4 334444444332 43333    3322222  223446677777778888888887744   3455542   2233567


Q ss_pred             HHHHHHHHhccCCCHHHHHHHHHHHH
Q 020587          242 KLIQVAASQLSDQLPESREAARTLLL  267 (324)
Q Consensus       242 ~ll~~l~~~L~D~~pEvR~~AR~~l~  267 (324)
                      +-+..+..+|+|+.-.||.+..+++.
T Consensus       230 krv~LlewgLnDRe~sVk~A~~d~il  255 (892)
T KOG2025|consen  230 KRVLLLEWGLNDREFSVKGALVDAIL  255 (892)
T ss_pred             HHHHHHHHhhhhhhhHHHHHHHHHHH
Confidence            78888889999999999999888876

>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus

Probab=88.34  E-value=2.3  Score=37.93  Aligned_cols=74  Identities=16%  Similarity=0.128  Sum_probs=57.8

Q ss_pred             hhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhcC
Q 020587          198 ILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSVYEKSH  277 (324)
Q Consensus       198 ~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~~~a  277 (324)
                      ++-++.|...+.+.+..+|..+..++..+++. |--     .....++.+..+..|.++.+|..|..++..+.+-|+..-
T Consensus         7 Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~q-GLv-----nP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v   80 (187)
T PF12830_consen    7 QRYLKNILELCLSSDDSVRLAALQVLELILRQ-GLV-----NPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLV   80 (187)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhc-CCC-----ChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHH
Confidence            34566777788899999999999988887775 221     246688888889999999999999999988877776544

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.87  E-value=11  Score=38.97  Aligned_cols=130  Identities=15%  Similarity=0.121  Sum_probs=97.6

Q ss_pred             HHHHHHHhhhh-HH--hhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcCh------hhhHHHHhhhcc-CCCHHHH
Q 020587          147 AADIFSAYNDR-MI--DLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSP------ILLLPKLQPYLK-NRNPRIR  216 (324)
Q Consensus       147 l~dLf~~L~~~-m~--~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~------~~ll~~L~~~~~-hKNp~VR  216 (324)
                      ++.+.+..+.. ++  +-++.++..|..|+.+.+..++..|.+.|..+..-++.      +.++..|..++- .-|..|-
T Consensus       238 ~Af~ael~~~~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~  317 (533)
T KOG2032|consen  238 IAFFAELKRPKELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQ  317 (533)
T ss_pred             HHHHHHHhCcccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHH
Confidence            33444444433 33  45788999999999999999999999999999887443      235556666664 4668899


Q ss_pred             HHHHHHHHhhcccccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhcC
Q 020587          217 AKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSVYEKSH  277 (324)
Q Consensus       217 ~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~~~a  277 (324)
                      -++..+|..+++......+..+ .-.+.-.+..+..|.+++.|.+|-.++..|-..-+...
T Consensus       318 leam~~Lt~v~~~~~~~~l~~~-~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~  377 (533)
T KOG2032|consen  318 LEAMKCLTMVLEKASNDDLESY-LLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGW  377 (533)
T ss_pred             HHHHHHHHHHHHhhhhcchhhh-chhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCc
Confidence            9999999999988766656555 44555667789999999999999999988876655443

>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1

Probab=87.06  E-value=13  Score=30.43  Aligned_cols=90  Identities=11%  Similarity=0.067  Sum_probs=69.5

Q ss_pred             HHHHHHhhhhHHHHHHHHccCcc--h--HHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 020587          114 KEAMLDILGDVIPLVVKSLKNPR--S--AVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLLKSSQDKRFVCEAAEKALV  189 (324)
Q Consensus       114 ~~~l~~~L~~iv~~l~~~vksLR--S--~Vsk~A~~tl~dLf~~L~~~m~~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~  189 (324)
                      ++++.+.+=.++..+...+.|.+  -  .--+.++..+++|-+..|+.+......+...|..-...  .=+++.+-.|..
T Consensus         2 ~~fL~~~~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~--~eL~~~al~~W~   79 (107)
T smart00802        2 ADFLKDHFLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALEI--PELRSLALRCWH   79 (107)
T ss_pred             hHHHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc--hhHHHHHHHHHH
Confidence            35566666666667777777776  2  22678999999999999998888888888887766654  349999999999


Q ss_pred             HHHhhcChhhhHHHHh
Q 020587          190 AMTTWVSPILLLPKLQ  205 (324)
Q Consensus       190 amv~~vs~~~ll~~L~  205 (324)
                      .++++..+..+-+.|.
T Consensus        80 ~~i~~L~~~~l~~ll~   95 (107)
T smart00802       80 VLIKTLKEEELGPLLD   95 (107)
T ss_pred             HHHHhCCHHHHHHHHH
Confidence            9999999988776553

Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.

>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length

Probab=86.81  E-value=33  Score=33.94  Aligned_cols=151  Identities=15%  Similarity=0.133  Sum_probs=94.5

Q ss_pred             HHHHHHHHHHHHHHhHcHHHHHHhhh----hHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHHHH
Q 020587           97 VVVCEALNNVRRLSIFHKEAMLDILG----DVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLLK  172 (324)
Q Consensus        97 ~~r~eaL~~LRrLa~~h~~~l~~~L~----~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d~ll~~LL~K  172 (324)
                      .-.+|.|.-+++|...+|+.+....+    .++..+....++.|+.    |..+..++...++.  ...+-..+...+.+
T Consensus       149 si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~----a~~l~~~~~~~l~~--~~~~s~~~~~~~~~  222 (372)
T PF12231_consen  149 SIISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTK----AISLLLEAKKCLGP--NKELSKSVLEDLQR  222 (372)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHH----HHHHHHHHHHHhCh--hHHHHHHHHHHhcc
Confidence            45789999999999999998876655    4455555556666655    44444455455553  22344444555555


Q ss_pred             hcCChHHHHHHHHHHHHHHHhhcChhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhh-ccHHHHHHHHHHhc
Q 020587          173 SSQDKRFVCEAAEKALVAMTTWVSPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKE-YGIDKLIQVAASQL  251 (324)
Q Consensus       173 a~~sk~FI~e~A~~AL~amv~~vs~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~-~~~~~ll~~l~~~L  251 (324)
                      .-..+ -+.+.-..-|..|+..-...+..+.|+...           ..+|       |...+.. .-....+...-.+.
T Consensus       223 ~~~~~-~~~~~~~~~L~~mi~~~~~~~~a~~iW~~~-----------i~LL-------~~~~~~~w~~~n~wL~v~e~cF  283 (372)
T PF12231_consen  223 SLENG-KLIQLYCERLKEMIKSKDEYKLAMQIWSVV-----------ILLL-------GSSRLDSWEHLNEWLKVPEKCF  283 (372)
T ss_pred             ccccc-cHHHHHHHHHHHHHhCcCCcchHHHHHHHH-----------HHHh-------CCchhhccHhHhHHHHHHHHHh
Confidence            44434 344555666777776645555555555443           1111       2221111 12788899999999


Q ss_pred             cCCCHHHHHHHHHHHHHHHHH
Q 020587          252 SDQLPESREAARTLLLELQSV  272 (324)
Q Consensus       252 ~D~~pEvR~~AR~~l~~L~~~  272 (324)
                      ++++|.+|..|-.+-..|...
T Consensus       284 n~~d~~~k~~A~~aW~~liy~  304 (372)
T PF12231_consen  284 NSSDPQVKIQAFKAWRRLIYA  304 (372)
T ss_pred             cCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999887766653

Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.

>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal

Probab=86.12  E-value=11  Score=32.69  Aligned_cols=109  Identities=15%  Similarity=0.159  Sum_probs=75.3

Q ss_pred             CHHHHHHHHHHHHHHHhHcHH----------HHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhHHH
Q 020587           95 DWVVVCEALNNVRRLSIFHKE----------AMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDP  164 (324)
Q Consensus        95 dW~~r~eaL~~LRrLa~~h~~----------~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d~  164 (324)
                      ++..+.=||..+..+...|+.          ++...-.++++.+.+.+.+-...+...++..+.-|+..++..+..+++.
T Consensus        35 ~~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele~  114 (168)
T PF12783_consen   35 DERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELEV  114 (168)
T ss_pred             hHHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            446677888888877665433          3333335677888888877679999999999999999999999999999


Q ss_pred             HHHHHHHHhcCC-hHHHHHHHHHHHHHHHhhcChhhhHHHH
Q 020587          165 LLVQLLLKSSQD-KRFVCEAAEKALVAMTTWVSPILLLPKL  204 (324)
Q Consensus       165 ll~~LL~Ka~~s-k~FI~e~A~~AL~amv~~vs~~~ll~~L  204 (324)
                      ++..++.+.-++ +.-.. .=..+|..+..-+..+.++-.+
T Consensus       115 ~l~~i~~~il~~~~~~~~-~k~~~Le~l~~l~~~p~~l~~l  154 (168)
T PF12783_consen  115 FLSHIILRILESDNSSLW-QKELALEILRELCKDPQFLVDL  154 (168)
T ss_pred             HHHHHHHHHHccCCCcHH-HHHHHHHHHHHHHhChhHHHHH
Confidence            999999976432 21111 2223455555555555554433

>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein

Probab=86.09  E-value=3.7  Score=35.19  Aligned_cols=81  Identities=14%  Similarity=0.085  Sum_probs=60.0

Q ss_pred             ChhhhHHHHhhhcc-CCCHHHHHHHHHHHHhhcccccccchhhccHHHHHHH-HHHhccC---CCHHHHHHHHHHHHHHH
Q 020587          196 SPILLLPKLQPYLK-NRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQV-AASQLSD---QLPESREAARTLLLELQ  270 (324)
Q Consensus       196 s~~~ll~~L~~~~~-hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~-l~~~L~D---~~pEvR~~AR~~l~~L~  270 (324)
                      .|...+..|..-++ ++||.+...+..+|..|+++-|..-..+.....+++. +.+.+.+   ...+|+.-...++....
T Consensus        35 ~~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~  114 (141)
T cd03565          35 GPKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWA  114 (141)
T ss_pred             cHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHH
Confidence            45557777777776 6899999999999999999998864433345566665 7777764   34588988888888777


Q ss_pred             HHhhhc
Q 020587          271 SVYEKS  276 (324)
Q Consensus       271 ~~~~~~  276 (324)
                      ..|...
T Consensus       115 ~~f~~~  120 (141)
T cd03565         115 DAFRGS  120 (141)
T ss_pred             HHhCCC
Confidence            777543

The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.08  E-value=6.5  Score=45.34  Aligned_cols=134  Identities=19%  Similarity=0.169  Sum_probs=98.1

Q ss_pred             HHHHHHHHHHhhhhHHhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhh---cC---hhhhHHHHhhhccCCCHHHHH
Q 020587          144 IMTAADIFSAYNDRMIDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTW---VS---PILLLPKLQPYLKNRNPRIRA  217 (324)
Q Consensus       144 ~~tl~dLf~~L~~~m~~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~---vs---~~~ll~~L~~~~~hKNp~VR~  217 (324)
                      .--++.|.+.-|..++||+..++|-|..==-|-++-|+.+-..--+++++-   +-   ...++..|..++.+|-.+||.
T Consensus       978 AfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVRe 1057 (1702)
T KOG0915|consen  978 AFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVRE 1057 (1702)
T ss_pred             hhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHH
Confidence            344555555567778999999999998665555555554433333333321   11   123566788899999999999


Q ss_pred             HHHHHHHhhcccccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhcCC
Q 020587          218 KASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSVYEKSHD  278 (324)
Q Consensus       218 ~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~~~a~  278 (324)
                      .+|..|..+++......+.+. +..+-.++.+-..|=-.-||++|-++...|.++--..-+
T Consensus      1058 asclAL~dLl~g~~~~~~~e~-lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d 1117 (1702)
T KOG0915|consen 1058 ASCLALADLLQGRPFDQVKEK-LPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICD 1117 (1702)
T ss_pred             HHHHHHHHHHcCCChHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            999999999998655545444 788899999999999999999999999988887766655

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=86.03  E-value=16  Score=39.79  Aligned_cols=190  Identities=16%  Similarity=0.139  Sum_probs=127.8

Q ss_pred             CHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHHHhHcHHHHH-----Hhhh------------------------------
Q 020587           79 DIDTSVKTLVAGLD-SKDWVVVCEALNNVRRLSIFHKEAML-----DILG------------------------------  122 (324)
Q Consensus        79 dpe~~L~~~l~~L~-s~dW~~r~eaL~~LRrLa~~h~~~l~-----~~L~------------------------------  122 (324)
                      .-...+-..++.+. .++|..|-.++..++.++..||+.-.     +.+.                              
T Consensus       155 ~~~~~ll~~le~l~~~eet~vr~k~ve~l~~v~~~~~~~~~~~~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~~~v  234 (759)
T KOG0211|consen  155 EYAHMLLPPLELLATVEETGVREKAVESLLKVAVGLPKEKLREHLVPLLKRLATGDWFQSRLSACGLFGKLYVSLPDDAV  234 (759)
T ss_pred             hHHHHhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHccchhhhhcchhhhhhhHHhccCCChHHH
Confidence            33445555666664 56899999999999998887754322     1000                              


Q ss_pred             --hHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChh--
Q 020587          123 --DVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPI--  198 (324)
Q Consensus       123 --~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~--  198 (324)
                        ++.+..-...++--.-|=++++.-++.++.++..  +...+.+++.+.....|+..-|++.|-.++..+.......  
T Consensus       235 k~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~--~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~d  312 (759)
T KOG0211|consen  235 KRELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLES--EIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDDD  312 (759)
T ss_pred             HHHHHHHHHhhccccchhhHHHHHhhhHHHHHHHHH--HHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCchh
Confidence              0001111111111122223333444455555554  3334556666777778888999999999999999998777  


Q ss_pred             ---hhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhh
Q 020587          199 ---LLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSVYE  274 (324)
Q Consensus       199 ---~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~  274 (324)
                         .+.+.+......++.++|..++.....+-..+|+..    +...+.+.....+.|.-.|+|++.-.-...|...+.
T Consensus       313 ~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~----~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~  387 (759)
T KOG0211|consen  313 VVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGPSA----TRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLN  387 (759)
T ss_pred             hhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhcccc----CcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcC
Confidence               567778888899999999999999999999988842    245566777788899999999988777766665555

>KOG4524 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.96  E-value=14  Score=40.92  Aligned_cols=113  Identities=17%  Similarity=0.166  Sum_probs=77.8

Q ss_pred             CCCCCCCCcccceeccCCCCCCCCCHHHHH----HHHHhhcCCCCHHHHHHHHHHHHH---HHhHcHHHHHHhhhhHHHH
Q 020587           55 GNAGPGIANSEVEYIDSENLIDVEDIDTSV----KTLVAGLDSKDWVVVCEALNNVRR---LSIFHKEAMLDILGDVIPL  127 (324)
Q Consensus        55 ~~~~~~~~~~~~~yi~~eeL~pl~dpe~~L----~~~l~~L~s~dW~~r~eaL~~LRr---La~~h~~~l~~~L~~iv~~  127 (324)
                      ++++++.+|..-+|-+.|  +++++--..+    .....-|++++=..|+++|+-++-   +...|++.+.+..|..=+.
T Consensus       774 ~e~~~e~edens~~~d~e--p~~~~qv~iv~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~  851 (1014)
T KOG4524|consen  774 EEREEEVEDENSEYTDTE--PILPDQVKIVLKILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPS  851 (1014)
T ss_pred             CCCCCCccccccCCCCCC--CCCChHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhH
Confidence            344455555555555544  4444444443    444555789999999999999986   3455677788999998888


Q ss_pred             HHHHccCcchHHHHHHHHHHHHHHHHhhhhHH-hhHHHHHHHH
Q 020587          128 VVKSLKNPRSAVCKTAIMTAADIFSAYNDRMI-DLLDPLLVQL  169 (324)
Q Consensus       128 l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~-~~~d~ll~~L  169 (324)
                      |+..++.=.--+.--|+.|+-.|...-|+-+. +++..++|.|
T Consensus       852 vie~~~~k~~L~v~~a~~~i~~m~~~sgDFv~sR~l~dvlP~l  894 (1014)
T KOG4524|consen  852 VIECLLCKDPLIVQRAFSCIEQMGKYSGDFVASRFLEDVLPWL  894 (1014)
T ss_pred             HHHHHhcCchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            99988887778888899988888877776554 3344444444

>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes

Probab=85.12  E-value=5.7  Score=35.30  Aligned_cols=91  Identities=20%  Similarity=0.109  Sum_probs=64.5

Q ss_pred             hhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhhhH
Q 020587          122 GDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPILLL  201 (324)
Q Consensus       122 ~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~ll  201 (324)
                      ......+.++++|-+.=+-|.|+.++...+..      .+++.++..+-..+.+...||+.+...+|..+... .|..+.
T Consensus       119 ~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~------~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~-~~~~v~  191 (213)
T PF08713_consen  119 PEALELLEKWAKSDNEWVRRAAIVMLLRYIRK------EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKK-DPDEVL  191 (213)
T ss_dssp             GGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG------CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT--HHHHH
T ss_pred             HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh------cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHh-CHHHHH
Confidence            44556778899999999999999776433222      66777888877788888999999999999997766 777788


Q ss_pred             HHHhhhccCCCHHHHHHH
Q 020587          202 PKLQPYLKNRNPRIRAKA  219 (324)
Q Consensus       202 ~~L~~~~~hKNp~VR~~a  219 (324)
                      +.|.....+=++.+++++
T Consensus       192 ~~l~~~~~~~~~~~~r~A  209 (213)
T PF08713_consen  192 EFLQKNSDRLSRWTLRYA  209 (213)
T ss_dssp             HHHHHS-----HHHHHHH
T ss_pred             HHHHHCcccCchhHHHHH
Confidence            888776555555555554

The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.

>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus

Probab=84.85  E-value=22  Score=31.60  Aligned_cols=132  Identities=20%  Similarity=0.192  Sum_probs=86.7

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHHHHhh--cChhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhc----cH
Q 020587          167 VQLLLKSSQDKRFVCEAAEKALVAMTTW--VSPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEY----GI  240 (324)
Q Consensus       167 ~~LL~Ka~~sk~FI~e~A~~AL~amv~~--vs~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~----~~  240 (324)
                      +.+|+-+-..+.-+|..|-..+..+++.  ++|..++|.|..-..+.|+.+|..+...+..+.++.+.  +...    |.
T Consensus        11 ~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s--~v~~~~~~gi   88 (187)
T PF12830_consen   11 KNILELCLSSDDSVRLAALQVLELILRQGLVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHES--LVESRYSEGI   88 (187)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHH--HHHHHHHHHH
Confidence            3444455566788999999999999987  59999999998888899999999999999999998743  2211    23


Q ss_pred             HHHHHHHHHhccCCCH------------------HHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCcchhHHHHHHHhcCC
Q 020587          241 DKLIQVAASQLSDQLP------------------ESREAARTLLLELQSVYEKSHDSAPATVSDSPEMDSWENFCQSKLS  302 (324)
Q Consensus       241 ~~ll~~l~~~L~D~~p------------------EvR~~AR~~l~~L~~~~~~~a~~~~~~~~~~~~~~~w~~~~~~~l~  302 (324)
                      ..-.+.-...-.|...                  ..|..-++.+..|.+.|....-..  +.++....-..-.||-.+|.
T Consensus        89 ~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~Fl~~l~k~f~~~~~~~--~~~~~~~~l~~~~Fla~nLA  166 (187)
T PF12830_consen   89 RLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKFLKSLLKQFDFDLTKL--SSESSPSDLDFLLFLAENLA  166 (187)
T ss_pred             HHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhcccc--ccccchhHHHHHHHHHHHHh
Confidence            3333333333333332                  236777777777888887654211  02223334455566666554

>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p []

Probab=84.55  E-value=22  Score=33.71  Aligned_cols=140  Identities=13%  Similarity=0.135  Sum_probs=96.2

Q ss_pred             HHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhH----Hhh--HHHHHHHHHHHhc--------CChHH
Q 020587          114 KEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRM----IDL--LDPLLVQLLLKSS--------QDKRF  179 (324)
Q Consensus       114 ~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m----~~~--~d~ll~~LL~Ka~--------~sk~F  179 (324)
                      ...+...++-+++.++..++|....+-..||.++..|........    ...  .+.+-.+|.....        +..--
T Consensus       110 ~~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~  189 (282)
T PF10521_consen  110 RPWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLE  189 (282)
T ss_pred             cchHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHH
Confidence            345667889999999999999999999999999999999765333    211  2333333333333        44566


Q ss_pred             HHHHHHHHHHHHHhhc----------ChhhhHHH-HhhhccC--C--CHHHHHHHHHHHHhhcccccccchhhccHHHHH
Q 020587          180 VCEAAEKALVAMTTWV----------SPILLLPK-LQPYLKN--R--NPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLI  244 (324)
Q Consensus       180 I~e~A~~AL~amv~~v----------s~~~ll~~-L~~~~~h--K--Np~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll  244 (324)
                      +-..+-.||...+...          ...+++.. |..+..|  +  ++.+|...+..+..++..+|...++ + +.+++
T Consensus       190 Ll~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~-h-L~rii  267 (282)
T PF10521_consen  190 LLQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVK-H-LQRII  267 (282)
T ss_pred             HHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHH-H-HHHHH
Confidence            7777888887775431          11233332 4444432  3  6999999999999999999997444 3 68888


Q ss_pred             HHHHHhccCCC
Q 020587          245 QVAASQLSDQL  255 (324)
Q Consensus       245 ~~l~~~L~D~~  255 (324)
                      +.+...+.+..
T Consensus       268 ~~l~~~l~npf  278 (282)
T PF10521_consen  268 PVLSQILENPF  278 (282)
T ss_pred             HHHHHHhcCCC
Confidence            88888777654

>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []

Probab=84.35  E-value=1.6  Score=38.86  Aligned_cols=91  Identities=19%  Similarity=0.196  Sum_probs=61.8

Q ss_pred             HHhhHHHHHHHHHHHhcCChH------------------HHHHHHHHHHHHHHhhcC----hhhhHHHHhhhccCCCHHH
Q 020587          158 MIDLLDPLLVQLLLKSSQDKR------------------FVCEAAEKALVAMTTWVS----PILLLPKLQPYLKNRNPRI  215 (324)
Q Consensus       158 m~~~~d~ll~~LL~Ka~~sk~------------------FI~e~A~~AL~amv~~vs----~~~ll~~L~~~~~hKNp~V  215 (324)
                      +.|+++.++|.|+..+.-.+.                  =+|..|=.+|.++...+.    ...++..+..|+++ ...|
T Consensus         3 i~~~L~~llP~ly~et~v~~elir~V~mGPFKh~vDDGLelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D-~~DI   81 (169)
T PF08623_consen    3 IRPHLDQLLPNLYAETKVKPELIREVDMGPFKHKVDDGLELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD-EHDI   81 (169)
T ss_dssp             TTTTHHHHHHHHHHTTS--STTEEEEEETTCEEEEEGGGHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS--HHH
T ss_pred             hHHHHHHHHHHHHHHhccCHHHheeeecCCceeeecCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC-cHHH
Confidence            357788888888866554333                  478899999999987753    35566778899999 9999


Q ss_pred             HHHHHHHHHhhcccccccchhhccHHHHHHHHHHhc
Q 020587          216 RAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQL  251 (324)
Q Consensus       216 R~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L  251 (324)
                      |--+...|.+++..- +..+... ++.+++.+.+.|
T Consensus        82 k~L~~~~l~kl~~~~-p~~v~~~-Ld~l~~~l~~~L  115 (169)
T PF08623_consen   82 KMLCHLMLSKLAQLA-PEEVLQR-LDSLVEPLRKTL  115 (169)
T ss_dssp             HHHHHHHHHHHHHS--HHHHHHC-CTTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC-HHHHHHH-HHHHHHHHHHHh
Confidence            999999999997764 3323333 444444444444

; PDB: 4A0C_A 1U6G_C.

>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 []

Probab=83.78  E-value=22  Score=28.88  Aligned_cols=89  Identities=10%  Similarity=0.018  Sum_probs=65.0

Q ss_pred             HHHHHhhhhHHHHHHHHccC----cchHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 020587          115 EAMLDILGDVIPLVVKSLKN----PRSAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLLKSSQDKRFVCEAAEKALVA  190 (324)
Q Consensus       115 ~~l~~~L~~iv~~l~~~vks----LRS~Vsk~A~~tl~dLf~~L~~~m~~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~a  190 (324)
                      +++.+.+=.++..+...+.|    --..-=+.++..+++|.+..++.+......++..|-.-...  .-+++.+-.|...
T Consensus         3 ~fL~~~~Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~--~~l~~~al~~W~~   80 (107)
T PF08064_consen    3 DFLQPHILGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEI--PELREEALSCWNC   80 (107)
T ss_pred             HHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCC--hhhHHHHHHHHHH
Confidence            34554444455555555555    22233467899999999977888888888888877766555  3789999999999


Q ss_pred             HHhhcChhhhHHHHh
Q 020587          191 MTTWVSPILLLPKLQ  205 (324)
Q Consensus       191 mv~~vs~~~ll~~L~  205 (324)
                      ++++.++..+-+.|.
T Consensus        81 fi~~L~~~~l~~ll~   95 (107)
T PF08064_consen   81 FIKTLDEEDLGPLLD   95 (107)
T ss_pred             HHHHCCHHHHHHHHH
Confidence            999999988777654

; GO: 0004674 protein serine/threonine kinase activity

>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain

Probab=83.42  E-value=4.4  Score=32.90  Aligned_cols=73  Identities=21%  Similarity=0.183  Sum_probs=51.5

Q ss_pred             hhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHh-----c-cCCCHHHHHHHHHHHHHH
Q 020587          197 PILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQ-----L-SDQLPESREAARTLLLEL  269 (324)
Q Consensus       197 ~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~-----L-~D~~pEvR~~AR~~l~~L  269 (324)
                      +..++..|..-++|+||.+..++..+|..|+++-|..-........++.-+.++     . .|.+..||+.++.++...
T Consensus        35 ~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w  113 (115)
T cd00197          35 PKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW  113 (115)
T ss_pred             HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence            345777888888999999999999999999999777633333222233333222     2 355899999999888643

The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=83.41  E-value=11  Score=40.15  Aligned_cols=155  Identities=17%  Similarity=0.183  Sum_probs=107.7

Q ss_pred             HHHHHhhhhHHhhHH-----HHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhh----hHHHHhhhccCCCHHHHHHH
Q 020587          149 DIFSAYNDRMIDLLD-----PLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPIL----LLPKLQPYLKNRNPRIRAKA  219 (324)
Q Consensus       149 dLf~~L~~~m~~~~d-----~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~----ll~~L~~~~~hKNp~VR~~a  219 (324)
                      ++|..|.+.++.+-+     .+++.||....-..  -..+.-..|-.+........    ++|.|..-.+....+||-..
T Consensus       273 ~Ff~~L~~~l~~~pe~i~~~kvlp~Ll~~~~~g~--a~~~~ltpl~k~~k~ld~~eyq~~i~p~l~kLF~~~Dr~iR~~L  350 (690)
T KOG1243|consen  273 KFFSGLIDRLDNFPEEIIASKVLPILLAALEFGD--AASDFLTPLFKLGKDLDEEEYQVRIIPVLLKLFKSPDRQIRLLL  350 (690)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccc--cchhhhhHHHHhhhhccccccccchhhhHHHHhcCcchHHHHHH
Confidence            677777776655543     45555655543211  11111222334444444433    89999999999999999999


Q ss_pred             HHHHHhhcccccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhcCCCC-------CCCCCCCcchhH
Q 020587          220 SMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSVYEKSHDSA-------PATVSDSPEMDS  292 (324)
Q Consensus       220 a~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~~~a~~~-------~~~~~~~~~~~~  292 (324)
                      ..++...++.+..+.+    -+.+++.++.++.|.++-.|+.+-+.+..|........-..       -.++.++..--.
T Consensus       351 L~~i~~~i~~Lt~~~~----~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~Ln~Ellr~~ar~q~d~~~~irt  426 (690)
T KOG1243|consen  351 LQYIEKYIDHLTKQIL----NDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNLNGELLRYLARLQPDEHGGIRT  426 (690)
T ss_pred             HHhHHHHhhhcCHHhh----cchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhhcHHHHHHHHhhCccccCcccc
Confidence            9999999999877644    47799999999999999999999999998888877763211       123434445677


Q ss_pred             HHHHHHhcCChhhHHHH
Q 020587          293 WENFCQSKLSPLSAQAV  309 (324)
Q Consensus       293 w~~~~~~~l~~~~~~~~  309 (324)
                      |..-|-.+.++..+..+
T Consensus       427 ntticlgki~~~l~~~~  443 (690)
T KOG1243|consen  427 NTTICLGKIAPHLAASV  443 (690)
T ss_pred             cceeeecccccccchhh
Confidence            88888888877765544

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=83.40  E-value=27  Score=34.69  Aligned_cols=123  Identities=15%  Similarity=0.133  Sum_probs=78.2

Q ss_pred             hHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHHHHhcC--ChHHHHHHH-HHHHHHHHhhcCh----------------
Q 020587          137 SAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLLKSSQ--DKRFVCEAA-EKALVAMTTWVSP----------------  197 (324)
Q Consensus       137 S~Vsk~A~~tl~dLf~~L~~~m~~~~d~ll~~LL~Ka~~--sk~FI~e~A-~~AL~amv~~vs~----------------  197 (324)
                      .+--++|+..+-.|.+.++..+.+.+-..+..+|..-+.  .+..-..++ -.-+.++......                
T Consensus       225 ~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~  304 (370)
T PF08506_consen  225 DTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVD  304 (370)
T ss_dssp             -SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHH
T ss_pred             CCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHH
Confidence            344567888888888888888888888888888875321  233333333 2333344433311                


Q ss_pred             ---hhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHH
Q 020587          198 ---ILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTL  265 (324)
Q Consensus       198 ---~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~  265 (324)
                         ..++|.|+ .-..+.|-+|+.+..++..--..+..+     .+..+++.+..+|.+.+.-|+.||-.+
T Consensus       305 Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~-----~l~~~~~~l~~~L~~~~~vv~tyAA~~  369 (370)
T PF08506_consen  305 FFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKE-----QLLQIFPLLVNHLQSSSYVVHTYAAIA  369 (370)
T ss_dssp             HHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HH-----HHHHHHHHHHHHTTSS-HHHHHHHHHH
T ss_pred             HHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHH-----HHHHHHHHHHHHhCCCCcchhhhhhhh
Confidence               11234444 233788999999999998777765432     367799999999999999999998755

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=83.30  E-value=21  Score=39.20  Aligned_cols=148  Identities=16%  Similarity=0.148  Sum_probs=109.1

Q ss_pred             hhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHHHH-hcCChHHHHHHHHHHHHHHHhhcChh
Q 020587          120 ILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLLK-SSQDKRFVCEAAEKALVAMTTWVSPI  198 (324)
Q Consensus       120 ~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d~ll~~LL~K-a~~sk~FI~e~A~~AL~amv~~vs~~  198 (324)
                      .+..+...+...|-|..=.-=++|+.-+.+..+.-+.........++-.+++. ..|.|..+..-+..+|..|+....+.
T Consensus       250 i~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~  329 (815)
T KOG1820|consen  250 ILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPL  329 (815)
T ss_pred             hhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchh
Confidence            44555556666666666666667777666666666533344444455555544 56889999999999999999887543


Q ss_pred             ------hhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Q 020587          199 ------LLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSV  272 (324)
Q Consensus       199 ------~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~  272 (324)
                            .++|.|..+++.|.+.+|..+..++...+.        .+.+..+.+.+..++.+++|..|......+..+...
T Consensus       330 ~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~n--------s~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~  401 (815)
T KOG1820|consen  330 FRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILN--------STPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRK  401 (815)
T ss_pred             hHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHh--------cccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhh
Confidence                  256678899999999999999888888777        234889999999999999999999877777766666


Q ss_pred             hhh
Q 020587          273 YEK  275 (324)
Q Consensus       273 ~~~  275 (324)
                      +++
T Consensus       402 ~~~  404 (815)
T KOG1820|consen  402 LGP  404 (815)
T ss_pred             cCC
Confidence            663

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=83.21  E-value=33  Score=36.53  Aligned_cols=170  Identities=18%  Similarity=0.107  Sum_probs=99.4

Q ss_pred             HHHHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhh
Q 020587           82 TSVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDL  161 (324)
Q Consensus        82 ~~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~  161 (324)
                      ..+..++.+++++|=..|...|+.|+++...-.++=......++..+.+.+=|--++|=++|..|+..+-.   ...++.
T Consensus        91 ~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe---~~~nee  167 (885)
T COG5218          91 GTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQE---MELNEE  167 (885)
T ss_pred             HHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHh---ccCChH
Confidence            35778889999999999999999999997644332222234445566677778889999999988876542   111222


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHH--HHHHHhhcChhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhcc
Q 020587          162 LDPLLVQLLLKSSQDKRFVCEAAEKA--LVAMTTWVSPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYG  239 (324)
Q Consensus       162 ~d~ll~~LL~Ka~~sk~FI~e~A~~A--L~amv~~vs~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~  239 (324)
                      -+ +...|+.-..++  -- .+.+++  |...+.+-    -.|.|..-+.+-|...|+.+   ..+|+.++|.-....  
T Consensus       168 n~-~~n~l~~~vqnD--PS-~EVRr~allni~vdns----T~p~IlERarDv~~anRr~v---Y~r~Lp~iGd~~~ls--  234 (885)
T COG5218         168 NR-IVNLLKDIVQND--PS-DEVRRLALLNISVDNS----TYPCILERARDVSGANRRMV---YERCLPRIGDLKSLS--  234 (885)
T ss_pred             HH-HHHHHHHHHhcC--cH-HHHHHHHHHHeeeCCC----cchhHHHHhhhhhHHHHHHH---HHHHhhhhcchhhcc--
Confidence            11 222222222222  11 122222  12222222    23444555556666677654   456778887643222  


Q ss_pred             HHHHHHHHHHhccCCCHHHHHHHHHHHH
Q 020587          240 IDKLIQVAASQLSDQLPESREAARTLLL  267 (324)
Q Consensus       240 ~~~ll~~l~~~L~D~~pEvR~~AR~~l~  267 (324)
                      .++=+-.+..+|.|+.-.||.++..++.
T Consensus       235 i~kri~l~ewgl~dRe~sv~~a~~d~ia  262 (885)
T COG5218         235 IDKRILLMEWGLLDREFSVKGALVDAIA  262 (885)
T ss_pred             ccceehhhhhcchhhhhhHHHHHHHHHH
Confidence            2222236778888888888888887764

>PF05536 Neurochondrin: Neurochondrin

Probab=82.97  E-value=58  Score=34.11  Aligned_cols=224  Identities=19%  Similarity=0.166  Sum_probs=133.4

Q ss_pred             HHHHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHH---HhhhhHH-HHHHHHccC-------cchHHHHHHHHHHHHH
Q 020587           82 TSVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAML---DILGDVI-PLVVKSLKN-------PRSAVCKTAIMTAADI  150 (324)
Q Consensus        82 ~~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~---~~L~~iv-~~l~~~vks-------LRS~Vsk~A~~tl~dL  150 (324)
                      ..+..++..|++++=++|+-||..+.++....+..-.   ..++.+- ..+...++.       .+.....-|+..++-+
T Consensus         5 ~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f   84 (543)
T PF05536_consen    5 ASLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAF   84 (543)
T ss_pred             HHHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHH
Confidence            5688999999999877899999999999885542111   1111111 222223222       3344444455444444


Q ss_pred             HHHhhhhH--HhhHHHHHHHHHHHhcCChH-HHHHHHHHHHHHHHhhcChhh-hH-----HHHhhhccCCCHHHHHHHHH
Q 020587          151 FSAYNDRM--IDLLDPLLVQLLLKSSQDKR-FVCEAAEKALVAMTTWVSPIL-LL-----PKLQPYLKNRNPRIRAKASM  221 (324)
Q Consensus       151 f~~L~~~m--~~~~d~ll~~LL~Ka~~sk~-FI~e~A~~AL~amv~~vs~~~-ll-----~~L~~~~~hKNp~VR~~aa~  221 (324)
                      +.  -+++  ++.+-..+|.|+.-...... -+.+++-.+|..++.+=...+ ++     +.|...+.+ ++.....+..
T Consensus        85 ~~--~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~  161 (543)
T PF05536_consen   85 CR--DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIALN  161 (543)
T ss_pred             cC--ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHH
Confidence            43  2333  46677788888877755444 788888889998885433332 33     345555555 7778888888


Q ss_pred             HHHhhcccccccchhhc--cHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCcchhHHH-----
Q 020587          222 CFSRSVPRLGVEGIKEY--GIDKLIQVAASQLSDQLPESREAARTLLLELQSVYEKSHDSAPATVSDSPEMDSWE-----  294 (324)
Q Consensus       222 ~L~~~v~~~g~~~i~~~--~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~~~a~~~~~~~~~~~~~~~w~-----  294 (324)
                      .+..++.+.+...+...  .+..+++.++.......-+.+-.   ++..|...++...   .. +......++|-     
T Consensus       162 lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfe---ll~~L~~~L~~~~---~~-~~~~~~~~~W~~~l~~  234 (543)
T PF05536_consen  162 LLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFE---LLEFLSAFLPRSP---IL-PLESPPSPKWLSDLRK  234 (543)
T ss_pred             HHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHH---HHHHHHHhcCcCC---cc-ccccCChhhhHHHHHH
Confidence            88888888775544332  46677777776665444443333   3445556665541   11 22233445664     


Q ss_pred             ---HHHHhcCChhhHHHHHHHhhh
Q 020587          295 ---NFCQSKLSPLSAQAVLRVTNI  315 (324)
Q Consensus       295 ---~~~~~~l~~~~~~~~~~~~~~  315 (324)
                         ...++++++..=.+.+++.+.
T Consensus       235 gl~~iL~sr~~~~~R~~al~Laa~  258 (543)
T PF05536_consen  235 GLRDILQSRLTPSQRDPALNLAAS  258 (543)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHH
Confidence               456777777766666665543

>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain

Probab=82.85  E-value=3.4  Score=34.81  Aligned_cols=72  Identities=19%  Similarity=0.134  Sum_probs=51.3

Q ss_pred             hhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhc--cHHHHHHHHHHhcc--------CCCHHHHHHHHHHH
Q 020587          197 PILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEY--GIDKLIQVAASQLS--------DQLPESREAARTLL  266 (324)
Q Consensus       197 ~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~--~~~~ll~~l~~~L~--------D~~pEvR~~AR~~l  266 (324)
                      ...++..|..-+++++|-|+.++.++|..|+..- .+.....  ....+++.+..|-.        |.+..||..|+.++
T Consensus        36 ~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G-~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~  114 (122)
T cd03572          36 CQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKG-NSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELI  114 (122)
T ss_pred             HHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhC-CHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHH
Confidence            3457778889999999999999999999999974 4323221  23345555555554        34578999999998


Q ss_pred             HHH
Q 020587          267 LEL  269 (324)
Q Consensus       267 ~~L  269 (324)
                      ..+
T Consensus       115 ~~i  117 (122)
T cd03572         115 KAI  117 (122)
T ss_pred             HHH
Confidence            644

The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=82.63  E-value=31  Score=39.41  Aligned_cols=103  Identities=19%  Similarity=0.221  Sum_probs=74.8

Q ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhh----hHH
Q 020587           84 VKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYND----RMI  159 (324)
Q Consensus        84 L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~----~m~  159 (324)
                      +..++..|...  +.+.+||..|+.|+.+-.+..  .|..|++-++-...|.=..|=-+|+.|+.++....++    +-.
T Consensus       427 lts~IR~lk~~--~tK~~ALeLl~~lS~~i~de~--~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~dan  502 (1431)
T KOG1240|consen  427 LTSCIRALKTI--QTKLAALELLQELSTYIDDEV--KLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDAN  502 (1431)
T ss_pred             HHHHHHhhhcc--hhHHHHHHHHHHHhhhcchHH--HHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccch
Confidence            45556666543  458899999999988765443  4888889899999999999999999999999877652    223


Q ss_pred             hhHHHHHHHHHHHhcC-ChHHHHHHHHHHHHH
Q 020587          160 DLLDPLLVQLLLKSSQ-DKRFVCEAAEKALVA  190 (324)
Q Consensus       160 ~~~d~ll~~LL~Ka~~-sk~FI~e~A~~AL~a  190 (324)
                      -|.|.|+|.|=+.+.+ ++..+|-+-..+|..
T Consensus       503 iF~eYlfP~L~~l~~d~~~~~vRiayAsnla~  534 (1431)
T KOG1240|consen  503 IFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQ  534 (1431)
T ss_pred             hhHhhhhhhhHhhhccCccceehhhHHhhHHH
Confidence            4567788887777777 566666555544443

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=82.27  E-value=77  Score=34.10  Aligned_cols=136  Identities=13%  Similarity=0.137  Sum_probs=102.8

Q ss_pred             HHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChh-----
Q 020587          124 VIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPI-----  198 (324)
Q Consensus       124 iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~-----  198 (324)
                      +++.+...-.-+...|----+.+++.+|+..|..-.+|+-.+.|-|-...-|..-.-|+-|...+..++-+|+..     
T Consensus       801 VlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda  880 (975)
T COG5181         801 VLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDA  880 (975)
T ss_pred             hHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcccHHH
Confidence            344455544556666666677889999999999989999988888888888888888999999999888887542     


Q ss_pred             --hhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHH
Q 020587          199 --LLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLL  267 (324)
Q Consensus       199 --~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~  267 (324)
                        .++.+|++..-..+|-|....-+++..+-.-+|+.        .+..-+.++|--.+..||+.-...+.
T Consensus       881 ~IHLlNllwpNIle~sPhvi~~~~Eg~e~~~~~lg~g--------~~m~Yv~qGLFHPs~~VRk~ywtvyn  943 (975)
T COG5181         881 AIHLLNLLWPNILEPSPHVIQSFDEGMESFATVLGSG--------AMMKYVQQGLFHPSSTVRKRYWTVYN  943 (975)
T ss_pred             HHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHhccH--------HHHHHHHHhccCchHHHHHHHHHHHh
Confidence              25556889999999999888877777666655553        45566777888888888876665554

>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length

Probab=81.66  E-value=31  Score=34.06  Aligned_cols=178  Identities=12%  Similarity=0.089  Sum_probs=119.1

Q ss_pred             HcHHHHHHhhhhHHHHHHHHccC-cc-hHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 020587          112 FHKEAMLDILGDVIPLVVKSLKN-PR-SAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLLKSSQDKRFVCEAAEKALV  189 (324)
Q Consensus       112 ~h~~~l~~~L~~iv~~l~~~vks-LR-S~Vsk~A~~tl~dLf~~L~~~m~~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~  189 (324)
                      +.+.++.....+.+..++..+++ .. .++..+++.++.-|...+...|..+++.=++.|+...-.+.+-++..|...+.
T Consensus       121 f~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~  200 (372)
T PF12231_consen  121 FSPKIMTSDRVERLLAALHNIKNRFPSKSIISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLL  200 (372)
T ss_pred             CCCcccchhhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence            34555555555555566666665 44 46788999999999999999999998888888888887778889999999988


Q ss_pred             HHHhhcChhhhHHH-HhhhccCCCH--HHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHH
Q 020587          190 AMTTWVSPILLLPK-LQPYLKNRNP--RIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLL  266 (324)
Q Consensus       190 amv~~vs~~~ll~~-L~~~~~hKNp--~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l  266 (324)
                      .+...+.+.+.+.. +...++....  .+......-|..++..-+.    ......+=..+..+|.+..-+-..+....+
T Consensus       201 ~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~L~~mi~~~~~----~~~a~~iW~~~i~LL~~~~~~~w~~~n~wL  276 (372)
T PF12231_consen  201 EAKKCLGPNKELSKSVLEDLQRSLENGKLIQLYCERLKEMIKSKDE----YKLAMQIWSVVILLLGSSRLDSWEHLNEWL  276 (372)
T ss_pred             HHHHHhChhHHHHHHHHHHhccccccccHHHHHHHHHHHHHhCcCC----cchHHHHHHHHHHHhCCchhhccHhHhHHH
Confidence            88888887775553 4344432221  2333333333333332111    112556666777778666678888888888


Q ss_pred             HHHHHHhhhcCCCCCCCCCC-CcchhHHHHHHHh
Q 020587          267 LELQSVYEKSHDSAPATVSD-SPEMDSWENFCQS  299 (324)
Q Consensus       267 ~~L~~~~~~~a~~~~~~~~~-~~~~~~w~~~~~~  299 (324)
                      ......|...-      ++. .+....|..|+..
T Consensus       277 ~v~e~cFn~~d------~~~k~~A~~aW~~liy~  304 (372)
T PF12231_consen  277 KVPEKCFNSSD------PQVKIQAFKAWRRLIYA  304 (372)
T ss_pred             HHHHHHhcCCC------HHHHHHHHHHHHHHHHH
Confidence            88888887533      211 2357899998873

Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.

>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM

Probab=80.85  E-value=22  Score=30.07  Aligned_cols=98  Identities=17%  Similarity=0.136  Sum_probs=62.2

Q ss_pred             hcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhH--HHHHH
Q 020587           90 GLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLL--DPLLV  167 (324)
Q Consensus        90 ~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~--d~ll~  167 (324)
                      .+.++||..-.+=.+.+++= .       ..-.+.++.|.+.+++....|.-.|+..+..+.+..|..|..++  ...+.
T Consensus        17 ~~~~~Dw~~~l~icD~i~~~-~-------~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~   88 (140)
T PF00790_consen   17 SLPSPDWSLILEICDLINSS-P-------DGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLD   88 (140)
T ss_dssp             TSSS--HHHHHHHHHHHHTS-T-------THHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHcC-C-------ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHH
Confidence            34577998877655555443 1       12356677888999999999999999999999999998886553  22333


Q ss_pred             HHHHHh----cCChHHHHHHHHHHHHHHHhhc
Q 020587          168 QLLLKS----SQDKRFVCEAAEKALVAMTTWV  195 (324)
Q Consensus       168 ~LL~Ka----~~sk~FI~e~A~~AL~amv~~v  195 (324)
                      .|.+.+    ......|++.+...+..+....
T Consensus        89 ~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f  120 (140)
T PF00790_consen   89 ELVKLIKSKKTDPETPVKEKILELLQEWAEAF  120 (140)
T ss_dssp             HHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHccCCCCchhHHHHHHHHHHHHHHHHH
Confidence            333222    2111226766666666665555

Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=80.34  E-value=21  Score=39.21  Aligned_cols=147  Identities=16%  Similarity=0.146  Sum_probs=117.5

Q ss_pred             HHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhhhHHHH
Q 020587          125 IPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPILLLPKL  204 (324)
Q Consensus       125 v~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~ll~~L  204 (324)
                      ....+..+.|.-+.+--.|++.+.++++.-.+.-.-.-+.++...+....+...||==.|-+.+...|.- =|..++|.+
T Consensus       729 ~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev-y~e~il~dL  807 (982)
T KOG4653|consen  729 LQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV-YPEDILPDL  807 (982)
T ss_pred             HHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh-cchhhHHHH
Confidence            4556777888888888999999999999776665666778899999999999999988888877666654 677799988


Q ss_pred             hh-hcc--CCC-HHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhh
Q 020587          205 QP-YLK--NRN-PRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSVYE  274 (324)
Q Consensus       205 ~~-~~~--hKN-p~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~  274 (324)
                      .. |..  .|+ +.-|-++.+.+.+++++.|.=  ...=.+.++.+...++.|.+-+-|..+-..+..|.+...
T Consensus       808 ~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel--~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a  879 (982)
T KOG4653|consen  808 SEEYLSEKKKLQTDYRLKVGEAILKVAQALGEL--VFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLA  879 (982)
T ss_pred             HHHHHhcccCCCccceehHHHHHHHHHHHhccH--HHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHh
Confidence            75 553  333 578889999999999998873  322267899999999999988889999888888777665

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=80.32  E-value=16  Score=38.72  Aligned_cols=160  Identities=16%  Similarity=0.070  Sum_probs=106.1

Q ss_pred             HHHHHHHHHHHHhH--cHHHHH-----------HhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhHHHH
Q 020587           99 VCEALNNVRRLSIF--HKEAML-----------DILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDPL  165 (324)
Q Consensus        99 r~eaL~~LRrLa~~--h~~~l~-----------~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d~l  165 (324)
                      ..+++..+|..+..  |..+..           +.-+..-.-|.+.+.|.-|.+=-++..+++--|-.-|+.      .+
T Consensus       479 s~eai~dm~tya~ETqhe~i~Rglgig~aLi~ygrqe~add~I~ell~d~ds~lRy~G~fs~alAy~GTgn~------~v  552 (926)
T COG5116         479 SVEAIEDMRTYAGETQHERIKRGLGIGFALILYGRQEMADDYINELLYDKDSILRYNGVFSLALAYVGTGNL------GV  552 (926)
T ss_pred             CHHHHHHHHHHhcchhhhhHHhhhhhhhhHhhhhhHHHHHHHHHHHhcCchHHhhhccHHHHHHHHhcCCcc------hh
Confidence            46788888877642  222211           111112223444555677766666666666555554432      47


Q ss_pred             HHHHHHH-hcCChHHHHHHHHHHHHHHHhhcChhhhHH-HHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHHH
Q 020587          166 LVQLLLK-SSQDKRFVCEAAEKALVAMTTWVSPILLLP-KLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKL  243 (324)
Q Consensus       166 l~~LL~K-a~~sk~FI~e~A~~AL~amv~~vs~~~ll~-~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~l  243 (324)
                      +..||+- .++.|.=||.+|--||..+|.  ....+++ .+..-..+.|+-||+.+|..|-..+..-|        ....
T Consensus       553 v~~lLh~avsD~nDDVrRAAViAlGfvc~--~D~~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G--------~~~a  622 (926)
T COG5116         553 VSTLLHYAVSDGNDDVRRAAVIALGFVCC--DDRDLLVGTVELLSESHNFHVRAGVAVALGIACAGTG--------DKVA  622 (926)
T ss_pred             HhhhheeecccCchHHHHHHHHheeeeEe--cCcchhhHHHHHhhhccchhhhhhhHHHhhhhhcCCc--------cHHH
Confidence            7888888 578899999999999887653  2333444 45566678999999999998877666443        4566


Q ss_pred             HHHHHHhccCCCHHHHHHHHHHHHH-HHHHhh
Q 020587          244 IQVAASQLSDQLPESREAARTLLLE-LQSVYE  274 (324)
Q Consensus       244 l~~l~~~L~D~~pEvR~~AR~~l~~-L~~~~~  274 (324)
                      .+.+..+..|.+.-||+.|--++.+ |+++-+
T Consensus       623 ~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~  654 (926)
T COG5116         623 TDILEALMYDTNDFVRQSAMIAVGMILMQCNP  654 (926)
T ss_pred             HHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCc
Confidence            7778888999999999999887763 344444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	324
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	1e-27
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	4e-06
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	9e-11
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	3e-09
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	2e-08
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	6e-06
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	6e-06
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	3e-05
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	5e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	4e-07
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	5e-05
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	5e-05
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	2e-04
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	3e-04
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	9e-04

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242

 Score =  107 bits (267), Expect = 1e-27
 Identities = 39/202 (19%), Positives = 81/202 (40%), Gaps = 2/202 (0%)

Query: 70  DSENLIDVEDIDTSV-KTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLV 128
              +L+D  DI + + K     L+ K W +  E+L  + +L   H +      G ++  +
Sbjct: 2   SHMDLLDPVDILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSAL 61

Query: 129 VKSL-KNPRSAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLLKSSQDKRFVCEAAEKA 187
            K + K+    +   A    A +      R  +     +  LL K  + K  V  A  +A
Sbjct: 62  KKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREA 121

Query: 188 LVAMTTWVSPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVA 247
           + A+    S       +   L N+NP ++++ ++  +R++ R     + +  +  L    
Sbjct: 122 IDAIYASTSLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSL 181

Query: 248 ASQLSDQLPESREAARTLLLEL 269
              L++  P  R+++   L  L
Sbjct: 182 VKTLNEPDPTVRDSSAEALGTL 203

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242

 Score = 46.2 bits (109), Expect = 4e-06
 Identities = 22/194 (11%), Positives = 65/194 (33%), Gaps = 8/194 (4%)

Query: 75  IDVEDIDTSVKTLVAGLDS-KDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLK 133
           ++  +    V  L   +    + V+V  A   +  L+    +   +     +P +++  K
Sbjct: 49  LENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFK 108

Query: 134 NPRSAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTT 193
             +  V          I+++ +  +    + ++  L  K+   K        +AL     
Sbjct: 109 EKKPNVVTALREAIDAIYASTS--LEAQQESIVESLSNKNPSVKSETALFIARALTRTQP 166

Query: 194 WVSPILLLPKLQPYLKN----RNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAAS 249
                 LL  L   L       +P +R  ++      +  +G + +    +  +  +  +
Sbjct: 167 TALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPL-LADVDPLKMA 225

Query: 250 QLSDQLPESREAAR 263
           ++ +   ++    +
Sbjct: 226 KIKECQEKAEIKIK 239

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Length = 266

 Score = 60.6 bits (146), Expect = 9e-11
 Identities = 33/189 (17%), Positives = 71/189 (37%), Gaps = 7/189 (3%)

Query: 85  KTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAI 144
            +L++ L  KD+     AL+++ RL+     ++L     ++            A     +
Sbjct: 49  VSLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVL 108

Query: 145 MTAADIFSAYNDRMIDLLDP----LLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPILL 200
                I     D    +        +  LLLK+ + K  +  +    +  ++  V P+ +
Sbjct: 109 ELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPLKM 168

Query: 201 LPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESRE 260
            P L   LK++N R R++  +     +   G+  +       + +  A  + D+    R 
Sbjct: 169 TPMLLDALKSKNARQRSECLLVIEYYITNAGISPL---KSLSVEKTVAPFVGDKDVNVRN 225

Query: 261 AARTLLLEL 269
           AA  +L+  
Sbjct: 226 AAINVLVAC 234

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Length = 249

 Score = 55.4 bits (133), Expect = 3e-09
 Identities = 34/216 (15%), Positives = 76/216 (35%), Gaps = 16/216 (7%)

Query: 70  DSENLIDVEDIDTSV-KTLVAGLDSKDWVVVCEALNNVRRL---SIFHKEAMLDILGDVI 125
              +++  E I   + K     + S  W    EAL              ++      +++
Sbjct: 3   HMASMLPEETILDKLPKDFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLL 62

Query: 126 PLVVKSLKN-PRSAVCKTAIMTAADIFSAYNDRMI--DLLDPLLVQLLLKSSQDKRFVCE 182
            +    ++          A  +   I           D +  +   LL ++ + K  V E
Sbjct: 63  GIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIE 122

Query: 183 AAEKALVAMTTWVSPIL-------LLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEG- 234
           A  KAL+ +  +  P+        +L  +  ++K++ P+IR + +  F+ S+        
Sbjct: 123 AIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYS 182

Query: 235 -IKEYGIDKLIQVAASQLSDQLPESREAARTLLLEL 269
            ++ Y  D+++ +    ++D  P  R         L
Sbjct: 183 TLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAIL 218

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 54.3 bits (130), Expect = 2e-08
 Identities = 36/205 (17%), Positives = 65/205 (31%), Gaps = 15/205 (7%)

Query: 73  NLIDVEDIDTS-VKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLD--ILGDVIPLVV 129
             +  E   T  V      +   +  V   A + V+           +  I+  ++P + 
Sbjct: 271 KAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIK 330

Query: 130 KSLKNPRSAVCKTAIMTAADIFSAY-NDRMIDLLDPLLVQLLLKSSQDKRFVCEAAEKAL 188
           + + +    V          +      D  I+ L PL +  L     +   V       L
Sbjct: 331 ELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPE---VRLNIISNL 387

Query: 189 VAMTTWVSPIL----LLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLI 244
             +   +        LLP +    ++   R+R            +LGVE   E     L 
Sbjct: 388 DCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEK----LN 443

Query: 245 QVAASQLSDQLPESREAARTLLLEL 269
            +  + L D +   REAA + L +L
Sbjct: 444 SLCMAWLVDHVYAIREAATSNLKKL 468

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 46.9 bits (111), Expect = 6e-06
 Identities = 28/192 (14%), Positives = 70/192 (36%), Gaps = 12/192 (6%)

Query: 84  VKTLVAGLDSKDWVVVCEALNNVRRL-SIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKT 142
            +           +V   A + +     +   +   ++  ++IP+      + + +V   
Sbjct: 166 RQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD---NVKSEIIPMFSNLASDEQDSVRLL 222

Query: 143 AIMTAADIFSAYNDRMIDLLDPLLVQLLLKSSQDK-RFVCEAAEKALVAMTTWVSPIL-- 199
           A+    +I         + L+ L++  L ++++DK   V          +   V P +  
Sbjct: 223 AVEACVNIAQLLPQ---EDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITK 279

Query: 200 --LLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPE 257
             L+P  Q  +K+    +RA AS         L  +  +   + +++      +SD    
Sbjct: 280 TDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQH 339

Query: 258 SREAARTLLLEL 269
            + A  ++++ L
Sbjct: 340 VKSALASVIMGL 351

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 46.9 bits (111), Expect = 6e-06
 Identities = 26/148 (17%), Positives = 47/148 (31%), Gaps = 11/148 (7%)

Query: 123 DVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLLKSSQDKRFVCE 182
             I +++  L+N    +   +I   + I  A     ++     L+  L  +  D+  V  
Sbjct: 10  YPIAVLIDELRNEDVQLRLNSIKKLSTIALALG---VERTRSELLPFLTDTIYDEDEVLL 66

Query: 183 AAEKALVAMTTWVSP----ILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEY 238
           A  + L   TT V        LLP L+         +R KA               ++ +
Sbjct: 67  ALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAH 126

Query: 239 GIDKLIQVAASQLSDQLPESREAARTLL 266
                + +           SR +A  L 
Sbjct: 127 ----FVPLVKRLAGGDWFTSRTSACGLF 150

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 44.6 bits (105), Expect = 3e-05
 Identities = 30/212 (14%), Positives = 71/212 (33%), Gaps = 16/212 (7%)

Query: 71  SENLIDVEDIDTSVKTLVAGLDSKDWVVVCEALNNVRRL-SIFHKEAMLDILGDVIPLVV 129
           S  L     I+  +   +A L  +   V    ++N+  +  +     +   L   +P +V
Sbjct: 352 SPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSL---LPAIV 408

Query: 130 KSLKNPRSAVCKTAIMTAADIFSAYN-DRMIDLLDPLLVQLLLKSSQDKRFVCEAAEKAL 188
           +  ++ +  V    I     +      +   + L+ L +  L+      R   EAA   L
Sbjct: 409 ELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIR---EAATSNL 465

Query: 189 VAMTTWVSP----ILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLI 244
             +            ++PK+     + N   R     C +      G +   ++ +  ++
Sbjct: 466 KKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVL 525

Query: 245 QVAASQLSDQLPESREAARTLLLELQSVYEKS 276
           ++      D +   R      L ++  + + S
Sbjct: 526 RM----AGDPVANVRFNVAKSLQKIGPILDNS 553

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 40.8 bits (95), Expect = 5e-04
 Identities = 27/173 (15%), Positives = 57/173 (32%), Gaps = 12/173 (6%)

Query: 84  VKTLVAGLDSKDWVVVCEALNNVRRLS-IFHKEAMLDILGDVIPLVVKSLKNPRSAVCKT 142
           +  +   +   +  V     + +  LS I  K+  ++    ++PL +  LK+    V   
Sbjct: 326 LPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIE---HLLPLFLAQLKDECPEVRLN 382

Query: 143 AIMTAADIFSAYN-DRMIDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPI--- 198
            I     +       ++   L P +V+L        R      E  +  +   +      
Sbjct: 383 IISNLDCVNEVIGIRQLSQSLLPAIVELA--EDAKWRVRLAIIE-YMPLLAGQLGVEFFD 439

Query: 199 -LLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQ 250
             L      +L +    IR  A+    + V + G E      I K++ ++   
Sbjct: 440 EKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDP 492

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.5 bits (125), Expect = 1e-07
 Identities = 32/231 (13%), Positives = 72/231 (31%), Gaps = 52/231 (22%)

Query: 63  NSEVEYIDSENLIDVEDIDTSVKTLVAGLDSKDWVVVCEALNNVR--------RLSIF-- 112
           + ++ +++ +N    E +   ++ L+  +D  +W    +  +N++         L     
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLYQID-PNWTSRSDHSSNIKLRIHSIQAELRRLLK 239

Query: 113 ---HKEAMLDILGDV-IPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQ 168
              ++  +L +L +V       +  N     CK  ++T          ++ D L      
Sbjct: 240 SKPYENCLL-VLLNVQNAKAWNAF-NLS---CKI-LLTTRFK------QVTDFLSAATTT 287

Query: 169 LLLKSSQDKRFVCEAAEKALVAMTTWVSPILLLPKLQPYLKNRNPR----IRAKASMCFS 224
            +               K+L+       P      L   +   NPR    I        +
Sbjct: 288 HISLDHHSMTLT-PDEVKSLLLKYLDCRP----QDLPREVLTTNPRRLSIIAESIRDGLA 342

Query: 225 RSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSVYEK 275
                   +  K    DKL  +  S L+   P           E + ++++
Sbjct: 343 TW------DNWKHVNCDKLTTIIESSLNVLEPA----------EYRKMFDR 377

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 2e-04
 Identities = 40/269 (14%), Positives = 86/269 (31%), Gaps = 79/269 (29%)

Query: 75  IDVEDIDTSVKTLVAGLDSKDWVVVCEALNNVRRL-SIF---HKEAMLDILGDVIPLVVK 130
            D +D+    K++++  +    ++  +A++   RL        +E +   + +V+ +  K
Sbjct: 33  FDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYK 92

Query: 131 SLKNPRSAVCK-TAIMTAADIFSAYNDRM---IDLLDPLLV---------QLLLKSSQDK 177
            L +P     +  ++MT   ++    DR+     +     V         +  L   +  
Sbjct: 93  FLMSPIKTEQRQPSMMT--RMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPA 150

Query: 178 RFV-----------CEAAE-----KALVAMTT---WVS------PILLLPKLQPYLKNRN 212
           + V             A +     K    M     W++      P  +L  LQ  L   +
Sbjct: 151 KNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID 210

Query: 213 PRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSV 272
           P   +++      S  +L +  I+   + +L++      S             LL L +V
Sbjct: 211 PNWTSRSD---HSSNIKLRIHSIQAE-LRRLLK------SKPYENC-------LLVLLNV 253

Query: 273 YEKSHDSAPATVSDSPEMDSWENF---CQ 298
                               W  F   C+
Sbjct: 254 QNAKA---------------WNAFNLSCK 267

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 49.3 bits (117), Expect = 4e-07
 Identities = 28/192 (14%), Positives = 67/192 (34%), Gaps = 12/192 (6%)

Query: 78  EDIDTSVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRS 137
           +  +  +K L + L   + + + + +   +      KE   +++  +IP++  + +    
Sbjct: 65  DLYEPMLKKLFSLLKKSEAIPLTQEI--AKAFGQMAKEKP-ELVKSMIPVLFANYRIGDE 121

Query: 138 AVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSP 197
                      +I  A    M  ++   +  L  K+ +DK       E        +V+P
Sbjct: 122 KTKINVSYALEEIAKANPMLMASIVRDFMSMLSSKNREDKLTALNFIEAMGENSFKYVNP 181

Query: 198 ILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPE 257
            L  P++   L + +  +RA A          L         + K++     +L+D    
Sbjct: 182 FL--PRIINLLHDGDEIVRASAVEA-------LVHLATLNDKLRKVVIKRLEELNDTSSL 232

Query: 258 SREAARTLLLEL 269
             +  +  +  L
Sbjct: 233 VNKTVKEGISRL 244

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861

 Score = 44.0 bits (103), Expect = 5e-05
 Identities = 24/165 (14%), Positives = 59/165 (35%), Gaps = 10/165 (6%)

Query: 119 DILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAY--NDRMIDLLDPLLVQLLLKSSQD 176
           +    +    + +L +    +   A    A I      +    +L+  ++     +  ++
Sbjct: 91  EAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPEN 150

Query: 177 KR--------FVCEAAEKALVAMTTWVSPILLLPKLQPYLKNRNPRIRAKASMCFSRSVP 228
            +        ++CE+A+    A+ +  + IL+           +  +R  A    + S+ 
Sbjct: 151 VKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLI 210

Query: 229 RLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSVY 273
            +     +E   + L+QV       +  E + AA   L ++ S Y
Sbjct: 211 FIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKY 255

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Length = 278

 Score = 43.2 bits (101), Expect = 5e-05
 Identities = 35/209 (16%), Positives = 76/209 (36%), Gaps = 16/209 (7%)

Query: 78  EDIDTSVKTLVAGLDSKDWVVVCEALNNVRRL-----SIFHKEAMLDILGDVIPLVVKSL 132
           E++D +   L   L  K W    EA   + +L         ++  + I      L  + +
Sbjct: 5   EEVDYTTLPLEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYI 64

Query: 133 KNPRSAVCKTAI---------MTAADIFSAYNDRMIDLLDPLLVQLLLKSSQDKRFVCEA 183
            +      + AI           ++ + +A+N  +I    PLLV+  L SS+      ++
Sbjct: 65  TDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRAT-TKTQS 123

Query: 184 AEKALVAMTTWVSPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIK-EYGIDK 242
               L       S    +  + P+ + + P++ A A+ C    +   G+  +  +  + +
Sbjct: 124 MSCILSLCGLDTSITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPE 183

Query: 243 LIQVAASQLSDQLPESREAARTLLLELQS 271
           L++             R     L++E+  
Sbjct: 184 LLKHVPQLAGHGDRNVRSQTMNLIVEIYK 212

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230

 Score = 42.4 bits (98), Expect = 2e-04
 Identities = 30/210 (14%), Positives = 67/210 (31%), Gaps = 6/210 (2%)

Query: 89  AGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAA 148
           A    +D  V  EAL+ +  +       +++    ++  ++  L +PR AV K  I+   
Sbjct: 141 AIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALG 200

Query: 149 DIFSAYNDRMIDLLDPLLVQLLLKSSQ--DKRFVCEAAEKALVAMTTWVSPIL--LLPKL 204
            +  +  + +   L   L+  L K+      R   +            +   L  ++P +
Sbjct: 201 HLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLV 260

Query: 205 QPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAART 264
             +    +  +R      F   V R   E      +  +I +    L+     + +    
Sbjct: 261 VKFCNVDDDELREYCIQAFESFVRRCPKEVYPH--VSTIINICLKYLTYDPNYNYDDEDE 318

Query: 265 LLLELQSVYEKSHDSAPATVSDSPEMDSWE 294
               + +      D          +  SW+
Sbjct: 319 DENAMDADGGDDDDQGSDDEYSDDDDMSWK 348

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986

 Score = 41.6 bits (97), Expect = 3e-04
 Identities = 40/213 (18%), Positives = 80/213 (37%), Gaps = 24/213 (11%)

Query: 86  TLVAGLDSKD-WVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAI 144
            L   +   + W      L     +    K+ +   + ++IP++ +++ + +  V   A 
Sbjct: 137 HLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAAT 196

Query: 145 MTAADIFSAYNDRMIDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPI------ 198
                     +++ I+   P L+Q +   ++            L A TT+V+ +      
Sbjct: 197 AAMTKATETVDNKDIERFIPSLIQCIADPTE-----VPETVHLLGA-TTFVAEVTPATLS 250

Query: 199 LLLPKLQPYLKNRNPRIRAKA-----SMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSD 253
           +++P L   L  R   I+ K+     +MC     P    + I  + + KL+    S  + 
Sbjct: 251 IMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDP----QVIAPF-LGKLLPGLKSNFAT 305

Query: 254 -QLPESREAARTLLLELQSVYEKSHDSAPATVS 285
              PE+RE     L  L+ V     D A   +S
Sbjct: 306 IADPEAREVTLRALKTLRRVGNVGEDDAIPELS 338

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 38.8 bits (91), Expect = 9e-04
 Identities = 36/155 (23%), Positives = 72/155 (46%), Gaps = 19/155 (12%)

Query: 84  VKTLVAGLDSKDWVVVCEALNNVRRLSIF---HKEAMLDILGDVIPLVVKSLKNPRSAVC 140
           +  LV  L S +  ++ EAL  +  ++       +A++D     +P +V+ L +P   + 
Sbjct: 56  LPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID--AGALPALVQLLSSPNEQIL 113

Query: 141 KTAIMTAADIFSAYNDRMIDLLD----PLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVS 196
           + A+   ++I S  N+++  ++D    P LVQLL  SS +++ + EA   AL  + +  +
Sbjct: 114 QEALWALSNIASGGNEQIQAVIDAGALPALVQLL--SSPNEQILQEALW-ALSNIASGGN 170

Query: 197 PILL-------LPKLQPYLKNRNPRIRAKASMCFS 224
                      L KL+    + N +I+ +A     
Sbjct: 171 EQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALE 205

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	324
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	99.91
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	99.9
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	99.79
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	99.67
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.26
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	99.06
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	98.92
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	98.91
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	98.9
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	98.89
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	98.81
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	98.78
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	98.77
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	98.75
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	98.75
1qgr_A	876	Protein (importin beta subunit); transport recepto	98.74
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	98.74
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	98.73
1qgr_A	876	Protein (importin beta subunit); transport recepto	98.71
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	98.7
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	98.69
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	98.62
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	98.58
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	98.56
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	98.55
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.54
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	98.54
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	98.54
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	98.52
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	98.49
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	98.49
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	98.46
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	98.43
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	98.34
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	98.3
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	98.3
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	98.15
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	98.14
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	98.09
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	98.08
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	98.07
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	98.03
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	98.01
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	97.96
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	97.95
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	97.81
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	97.76
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	97.62
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	97.59
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	97.57
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	97.45
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	97.39
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	97.32
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	97.31
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	97.22
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	97.2
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	97.01
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	97.01
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	96.87
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	96.84
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	96.8
3nmz_A	458	APC variant protein; protein-protein complex, arma	96.79
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	96.62
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	96.57
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	96.57
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	96.48
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	96.47
2x19_B	963	Importin-13; nuclear transport, protein transport;	96.26
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	96.17
2x1g_F	971	Cadmus; transport protein, developmental protein,	96.14
2x1g_F	971	Cadmus; transport protein, developmental protein,	96.13
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	96.07
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	96.0
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	95.99
2x19_B	963	Importin-13; nuclear transport, protein transport;	95.79
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	95.68
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	95.38
3nmz_A	458	APC variant protein; protein-protein complex, arma	95.29
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	95.28
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	95.21
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	95.17
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	95.08
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	94.95
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	94.61
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	94.57
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	94.57
1x5b_A	163	Signal transducing adaptor molecule 2; VHS domain,	94.39
1mhq_A	148	ADP-ribosylation factor binding protein GGA2; supe	94.12
3ldz_A	140	STAM-1, signal transducing adapter molecule 1; ubi	94.05
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	94.03
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	93.83
3g2s_A	149	C-terminal fragment of sortilin-related receptor;	93.78
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	93.55
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	93.12
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	92.48
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	92.36
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	92.33
1juq_A	171	ADP-ribosylation factor binding protein GGA3; prot	91.93
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	91.48
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	90.23
3gs3_A	257	Symplekin, LD45768P; helix-turn-helix heat repeat	90.05
3zyq_A	226	Hepatocyte growth factor-regulated tyrosine kinas	89.96
1dvp_A	220	HRS, hepatocyte growth factor-regulated tyrosine k	89.07
1elk_A	157	Target of MYB1; superhelix of helices, endocytosis	88.58
3gs3_A	257	Symplekin, LD45768P; helix-turn-helix heat repeat	86.51
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	86.23
3o2t_A	386	Symplekin; heat repeat, scaffold, protein binding;	85.79
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	85.44
1vsy_5	997	Proteasome activator BLM10; 20S proteasome BLM10,	85.43
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	84.27
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	81.94
1sz9_A	144	PCF11 protein; RNA polymerase II CTD interacting d	81.06
3grl_A	651	General vesicular transport factor P115; vesicle t	80.15
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	80.08

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=99.91  E-value=1e-23  Score=190.66  Aligned_cols=214  Identities=17%  Similarity=0.190  Sum_probs=187.3

Q ss_pred             HHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHc-cCcchHHHHHHHHHHHHHHHHhhhhHHhhHHH
Q 020587           86 TLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSL-KNPRSAVCKTAIMTAADIFSAYNDRMIDLLDP  164 (324)
Q Consensus        86 ~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~v-ksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d~  164 (324)
                      .+++.++++||..|.+|+..|..++..++.+....+.+++..+.+.+ ++.+..|...||.+++.|+..++..|.+|++.
T Consensus        19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~   98 (242)
T 2qk2_A           19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASA   98 (242)
T ss_dssp             THHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHH
T ss_pred             HHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            58888999999999999999999998877665566788999999999 59999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHHHH
Q 020587          165 LLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLI  244 (324)
Q Consensus       165 ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll  244 (324)
                      +++.|+.++++.+..||+.|..||..++.+++...+++.|..+++|+|+++|..+..+|..++..+++.......++.++
T Consensus        99 ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~  178 (242)
T 2qk2_A           99 CVPSLLEKFKEKKPNVVTALREAIDAIYASTSLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLT  178 (242)
T ss_dssp             HHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999998876533333488999


Q ss_pred             HHHHHhccCCCHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCcchhHHHHHHHh
Q 020587          245 QVAASQLSDQLPESREAARTLLLELQSVYEKSHDSAPATVSDSPEMDSWENFCQS  299 (324)
Q Consensus       245 ~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~~~a~~~~~~~~~~~~~~~w~~~~~~  299 (324)
                      +.+..+++|.++++|..|..++..+..+++.....+-...-++.+..+...||++
T Consensus       179 p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~~L~~~~~~~i~~~~~~  233 (242)
T 2qk2_A          179 TSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLADVDPLKMAKIKECQEK  233 (242)
T ss_dssp             HHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGGGGTTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999986543222222234456666666654

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=99.90  E-value=1.9e-23  Score=192.40  Aligned_cols=229  Identities=15%  Similarity=0.194  Sum_probs=195.4

Q ss_pred             cceeccCCCCCCCCCHHHHHHHHHhhcCCCCHHHHHHHHHHHHH-HHhHcHHHH--HHhhhhHHHHHHHHc-cCcchHHH
Q 020587           65 EVEYIDSENLIDVEDIDTSVKTLVAGLDSKDWVVVCEALNNVRR-LSIFHKEAM--LDILGDVIPLVVKSL-KNPRSAVC  140 (324)
Q Consensus        65 ~~~yi~~eeL~pl~dpe~~L~~~l~~L~s~dW~~r~eaL~~LRr-La~~h~~~l--~~~L~~iv~~l~~~v-ksLRS~Vs  140 (324)
                      .++++++.|+.+--.+     .+.+.+.|++|.+|.+|+..|.. ++..+|++.  ...+.+++..+.+.+ ++.+..|.
T Consensus         4 ~~d~~~~~~i~~kl~~-----~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~   78 (249)
T 2qk1_A            4 MASMLPEETILDKLPK-----DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAV   78 (249)
T ss_dssp             SCCCCCCBCCGGGSCT-----THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHH
T ss_pred             hHhhcChhhhhhhCCh-----hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHH
Confidence            3566677666432223     57888899999999999999999 887677766  456788999999999 89999999


Q ss_pred             HHHHHHHHHHHHHhh-hhHH-hhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhc------C-hhhhHHHHhhhccCC
Q 020587          141 KTAIMTAADIFSAYN-DRMI-DLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWV------S-PILLLPKLQPYLKNR  211 (324)
Q Consensus       141 k~A~~tl~dLf~~L~-~~m~-~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~v------s-~~~ll~~L~~~~~hK  211 (324)
                      ..||.+++.|+..++ ..|. +|...+++.+|.++++.+.-|++.+..||++++.++      + ...+++.|..+++||
T Consensus        79 ~~A~~al~~la~~l~~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k  158 (249)
T 2qk1_A           79 ALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHK  158 (249)
T ss_dssp             HHHHHHHHHHHHHHCTTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCS
T ss_pred             HHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCC
Confidence            999999999999999 9999 999999999999999999999999999999999999      5 667999999999999


Q ss_pred             CHHHHHHHHHHHHhhcccccc--cchhhccH-HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCc
Q 020587          212 NPRIRAKASMCFSRSVPRLGV--EGIKEYGI-DKLIQVAASQLSDQLPESREAARTLLLELQSVYEKSHDSAPATVSDSP  288 (324)
Q Consensus       212 Np~VR~~aa~~L~~~v~~~g~--~~i~~~~~-~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~~~a~~~~~~~~~~~  288 (324)
                      ||++|..+..+|..++...+.  ..+.. .+ +.+++.+.++++|.++++|..|..++..+..++|+....+-...-++.
T Consensus       159 ~~~vk~~al~~l~~~~~~~~~~~~~l~~-~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~Ld~~  237 (249)
T 2qk1_A          159 TPQIRMECTQLFNASMKEEKDGYSTLQR-YLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHLDNL  237 (249)
T ss_dssp             SHHHHHHHHHHHHHHHHHCCSCSHHHHH-HHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHHSCHH
T ss_pred             ChHHHHHHHHHHHHHHHHcCCcchhHHH-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhHH
Confidence            999999999999999998765  22322 37 889999999999999999999999999999999976543222233566


Q ss_pred             chhHHHHHHHh
Q 020587          289 EMDSWENFCQS  299 (324)
Q Consensus       289 ~~~~w~~~~~~  299 (324)
                      +..+..+||++
T Consensus       238 k~~ki~~~~~~  248 (249)
T 2qk1_A          238 KRKKIEETVKT  248 (249)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHhc
Confidence            78888888874

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=99.79  E-value=3.8e-18  Score=157.79  Aligned_cols=191  Identities=14%  Similarity=0.206  Sum_probs=159.4

Q ss_pred             HHhhcCCCCHHHHHHHHHHHHHHHhHcHHHH-----HHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhh------
Q 020587           87 LVAGLDSKDWVVVCEALNNVRRLSIFHKEAM-----LDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYN------  155 (324)
Q Consensus        87 ~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l-----~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~------  155 (324)
                      +-++|.|++|+.|.+|++.|+.+...++...     ...+..+...+.+.++|.+.+|...|+.++..++..++      
T Consensus        14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~   93 (278)
T 4ffb_C           14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN   93 (278)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred             HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence            4578999999999999999999877654332     22467778888999999999999999999999998654      


Q ss_pred             hhHHhhHHHHHHHHHHH-hcCChHHHHHHHHHHHHHHHhhcCh-hhhHHHHhhhccCCCHHHHHHHHHHHHhhccccccc
Q 020587          156 DRMIDLLDPLLVQLLLK-SSQDKRFVCEAAEKALVAMTTWVSP-ILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVE  233 (324)
Q Consensus       156 ~~m~~~~d~ll~~LL~K-a~~sk~FI~e~A~~AL~amv~~vs~-~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~  233 (324)
                      ..+..++..+++.|+.| +++.+..+++.+..++..++..+.+ ..+++.|..+++||||++|..+..||..++..+|..
T Consensus        94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~  173 (278)
T 4ffb_C           94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLT  173 (278)
T ss_dssp             HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTT
T ss_pred             chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCC
Confidence            44667889999999999 6999999999999999888877654 668889999999999999999999999999999987


Q ss_pred             chhh-ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhcC
Q 020587          234 GIKE-YGIDKLIQVAASQLSDQLPESREAARTLLLELQSVYEKSH  277 (324)
Q Consensus       234 ~i~~-~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~~~a  277 (324)
                      .+.. ..++.+++.+.++++|++++||..|..++..++..+|...
T Consensus       174 ~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~~~  218 (278)
T 4ffb_C          174 NVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNNS  218 (278)
T ss_dssp             TCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC-----
T ss_pred             cCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCcch
Confidence            5532 2477889999999999999999999999999998888544

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=99.67  E-value=4.6e-15  Score=138.38  Aligned_cols=183  Identities=19%  Similarity=0.220  Sum_probs=158.9

Q ss_pred             HHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhh---HH-hh
Q 020587           86 TLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDR---MI-DL  161 (324)
Q Consensus        86 ~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~---m~-~~  161 (324)
                      .+...|-++||+.+.+|++.|.......++.+...+.-+.+.+.-.+.+-+.+|...++..+..++..++..   |. .+
T Consensus        50 ~~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~e  129 (266)
T 2of3_A           50 SLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEE  129 (266)
T ss_dssp             HHHHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHH
Confidence            556667789999999999999998877888777777766676666666889999999999999999999864   43 44


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHH
Q 020587          162 LDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGID  241 (324)
Q Consensus       162 ~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~  241 (324)
                      +..++|.|+.|+|+.|.-+|+.+...+..|..-++|.++++.|..+++|||+++|..+..++..++++.|...      .
T Consensus       130 a~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~~------~  203 (266)
T 2of3_A          130 VSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGISP------L  203 (266)
T ss_dssp             HHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSGG------G
T ss_pred             HHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCCc------c
Confidence            7899999999999999999999999999999888999999999999999999999999999999999999872      2


Q ss_pred             HHH---HHHHHhccCCCHHHHHHHHHHHHHHHHHhh
Q 020587          242 KLI---QVAASQLSDQLPESREAARTLLLELQSVYE  274 (324)
Q Consensus       242 ~ll---~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~  274 (324)
                      +.+   +.++++++|++++||++|-.++..+..+.|
T Consensus       204 ~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~G  239 (266)
T 2of3_A          204 KSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEG  239 (266)
T ss_dssp             GGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHT
T ss_pred             ccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhh
Confidence            245   999999999999999999999875555544

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.26  E-value=6.4e-11  Score=127.44  Aligned_cols=183  Identities=16%  Similarity=0.195  Sum_probs=156.8

Q ss_pred             HHHHHHhhcCC-CCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhh-hhHHh
Q 020587           83 SVKTLVAGLDS-KDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYN-DRMID  160 (324)
Q Consensus        83 ~L~~~l~~L~s-~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~-~~m~~  160 (324)
                      .+..+++.|.+ .+|+.++.||+.+.+|+...|+.+...|.++++.+...|.|.+..|.+.|..|+..++..++ ++++|
T Consensus       134 ~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~  213 (986)
T 2iw3_A          134 LLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIER  213 (986)
T ss_dssp             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGG
T ss_pred             HHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchhh
Confidence            35566777754 48999999999999999988999999999999999999999999999999999999999986 78899


Q ss_pred             hHHHHHHHHH---------HHhcCChHHHHHHHHHHHHHHHhhcChhhhHHHHhhhccCCCHHHHHHHHHHHHhhccccc
Q 020587          161 LLDPLLVQLL---------LKSSQDKRFVCEAAEKALVAMTTWVSPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLG  231 (324)
Q Consensus       161 ~~d~ll~~LL---------~Ka~~sk~FI~e~A~~AL~amv~~vs~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g  231 (324)
                      +++.++.++-         ++.+. .+||.+.-..+|..         ++|+|..++..+...++++++..+.++++...
T Consensus       214 ~~~~~~~~~~~p~~~~~~~~~l~~-~tfv~~v~~~~l~~---------~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~  283 (986)
T 2iw3_A          214 FIPSLIQCIADPTEVPETVHLLGA-TTFVAEVTPATLSI---------MVPLLSRGLNERETGIKRKSAVIIDNMCKLVE  283 (986)
T ss_dssp             GHHHHHHHHHCTTHHHHHHHHHTT-CCCCSCCCHHHHHH---------HHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCC
T ss_pred             hHHHHHHHhcChhhhHHHHHHhhc-CeeEeeecchhHHH---------HHHHHHhhhccCcchhheeeEEEEcchhhhcC
Confidence            9998887774         56666 56888877777777         77999999999999999999999999999877


Q ss_pred             ccchhhccHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHHHHHhhh
Q 020587          232 VEGIKEYGIDKLIQVAASQL-SDQLPESREAARTLLLELQSVYEK  275 (324)
Q Consensus       232 ~~~i~~~~~~~ll~~l~~~L-~D~~pEvR~~AR~~l~~L~~~~~~  275 (324)
                      .+.....-+++|++.+.+-. +=++||+|+.|.+++..|.++.+.
T Consensus       284 ~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~~~~  328 (986)
T 2iw3_A          284 DPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLRRVGNV  328 (986)
T ss_dssp             CHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred             CHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHhhcc
Confidence            65443322888888887744 456799999999999999999876

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=99.06  E-value=7.4e-09  Score=102.06  Aligned_cols=178  Identities=12%  Similarity=0.100  Sum_probs=146.0

Q ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHHHHhHc-HHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhH
Q 020587           84 VKTLVAGLDSKDWVVVCEALNNVRRLSIFH-KEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLL  162 (324)
Q Consensus        84 L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h-~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~  162 (324)
                      +..+...+.+.+|..|..++..+..++..- +++   ....+++.+...+++....|-..|+.+++.++..+|..+  +.
T Consensus       404 lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~---~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~--~~  478 (588)
T 1b3u_A          404 LPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEF---FDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEW--AH  478 (588)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGG---CCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHH--HH
T ss_pred             HHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHH---HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchh--HH
Confidence            445555667889999999999888887532 221   124577888888999999999999999999999998764  46


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChh----hhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhc
Q 020587          163 DPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPI----LLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEY  238 (324)
Q Consensus       163 d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~----~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~  238 (324)
                      +.+++.|+....+.+.-+|..+-.++..++..+.+.    .++|.|...+++.++.||..++..|..++..+|...+   
T Consensus       479 ~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~---  555 (588)
T 1b3u_A          479 ATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTL---  555 (588)
T ss_dssp             HHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHHH---
T ss_pred             HHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchhhh---
Confidence            788888887777778899999999999999887654    5778888889999999999999999999998876422   


Q ss_pred             cHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 020587          239 GIDKLIQVAASQLSDQLPESREAARTLLLELQ  270 (324)
Q Consensus       239 ~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~  270 (324)
                       .+.+++.+.++++|.++++|.+|..++..+.
T Consensus       556 -~~~~~p~l~~l~~d~d~~vr~~a~~al~~l~  586 (588)
T 1b3u_A          556 -QSEVKPILEKLTQDQDVDVKYFAQEALTVLS  586 (588)
T ss_dssp             -HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred             -HHHHHHHHHHHcCCCchhHHHHHHHHHHHhh
Confidence             3678888888999999999999999987654

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=98.92  E-value=2.4e-08  Score=98.44  Aligned_cols=184  Identities=17%  Similarity=0.138  Sum_probs=143.8

Q ss_pred             HHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHH--HHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhHH
Q 020587           86 TLVAGLDSKDWVVVCEALNNVRRLSIFHKEAM--LDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLD  163 (324)
Q Consensus        86 ~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l--~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d  163 (324)
                      .++..+.+++|..|..+...+-+++...+...  ...++.+++.+...+++....|-+.++.+++.++..+|+..  ..+
T Consensus       285 ~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~--~~~  362 (588)
T 1b3u_A          285 AFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDN--TIE  362 (588)
T ss_dssp             HHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHH--HHH
T ss_pred             HHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhH--HHH
Confidence            34444556667666666666666655432110  12356677778888899999999999999999999998754  356


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcCh----hhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhcc
Q 020587          164 PLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSP----ILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYG  239 (324)
Q Consensus       164 ~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~----~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~  239 (324)
                      .+++.|+..+.+....|+..+-.+|..++..+..    ..++|.|...+++++..+|..++.++..+...+|.+..    
T Consensus       363 ~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~----  438 (588)
T 1b3u_A          363 HLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFF----  438 (588)
T ss_dssp             HTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGC----
T ss_pred             HHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHHH----
Confidence            6778888888888899999999999999988775    34778888888999999999999999999888876522    


Q ss_pred             HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhh
Q 020587          240 IDKLIQVAASQLSDQLPESREAARTLLLELQSVYEK  275 (324)
Q Consensus       240 ~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~~  275 (324)
                      .+.+++.+..++.|.++++|+.|-.++..+...++.
T Consensus       439 ~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~  474 (588)
T 1b3u_A          439 DEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGK  474 (588)
T ss_dssp             CHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH
T ss_pred             HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCc
Confidence            367889999999999999999999999988877664

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=98.91  E-value=7e-08  Score=101.18  Aligned_cols=192  Identities=13%  Similarity=0.082  Sum_probs=158.4

Q ss_pred             HHHHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHH--hhhhHH
Q 020587           82 TSVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSA--YNDRMI  159 (324)
Q Consensus        82 ~~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~--L~~~m~  159 (324)
                      ..+..++..+.++++..|..++..+-+|+..+|+.+.+.++.++..+.+.+++.-..|...|+.++..+++.  +++.+.
T Consensus       215 ~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~  294 (852)
T 4fdd_A          215 SFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLV  294 (852)
T ss_dssp             HHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHT
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHH
Confidence            456677777888999999999999999999999999999999999999999999899999999988887763  455678


Q ss_pred             hhHHHHHHHHHHHh-----------cC-----------ChHHHHHHHHHHHHHHHhhcCh---hhhHHHHhhhccCCCHH
Q 020587          160 DLLDPLLVQLLLKS-----------SQ-----------DKRFVCEAAEKALVAMTTWVSP---ILLLPKLQPYLKNRNPR  214 (324)
Q Consensus       160 ~~~d~ll~~LL~Ka-----------~~-----------sk~FI~e~A~~AL~amv~~vs~---~~ll~~L~~~~~hKNp~  214 (324)
                      +++..+++.|+..+           ++           ..--+|..|..+|+.+....+.   ..+++.|...+++.++.
T Consensus       295 ~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~~~~~  374 (852)
T 4fdd_A          295 RHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWV  374 (852)
T ss_dssp             TTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTCSSHH
T ss_pred             HHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCHH
Confidence            89999999999887           33           2334788999999999887653   23556677788899999


Q ss_pred             HHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhh
Q 020587          215 IRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSVYEK  275 (324)
Q Consensus       215 VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~~  275 (324)
                      +|..++..|..+.+..+. .+.. -++.+++.+..++.|.++.+|..|-.++..+-...+.
T Consensus       375 ~R~aa~~alg~i~~~~~~-~~~~-~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~  433 (852)
T 4fdd_A          375 VKESGILVLGAIAEGCMQ-GMIP-YLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVS  433 (852)
T ss_dssp             HHHHHHHHHHHTTTTTHH-HHGG-GHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHH
T ss_pred             HHHHHHHHHHHHHhcchH-HHHH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc
Confidence            999999999999886543 2333 3788999999999999999999999888877766554

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=98.90  E-value=9.8e-08  Score=91.13  Aligned_cols=191  Identities=17%  Similarity=0.166  Sum_probs=152.5

Q ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhh-hHHHHHHHHccCcchHHHHHHHHHHHHHHHHh--------
Q 020587           84 VKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILG-DVIPLVVKSLKNPRSAVCKTAIMTAADIFSAY--------  154 (324)
Q Consensus        84 L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~-~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L--------  154 (324)
                      +..+...+.+.++..|..++..+..++..+++.+.+.+. .++..+...+++.-..|...|+..+..+....        
T Consensus       219 ~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~  298 (462)
T 1ibr_B          219 MQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEAS  298 (462)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            334444567789999999999999999988888878888 89888888889988899999999888887763        


Q ss_pred             -------------hhhHHhhHHHHHHHHHHHhcC-------ChHHHHHHHHHHHHHHHhhcCh---hhhHHHHhhhccCC
Q 020587          155 -------------NDRMIDLLDPLLVQLLLKSSQ-------DKRFVCEAAEKALVAMTTWVSP---ILLLPKLQPYLKNR  211 (324)
Q Consensus       155 -------------~~~m~~~~d~ll~~LL~Ka~~-------sk~FI~e~A~~AL~amv~~vs~---~~ll~~L~~~~~hK  211 (324)
                                   ..-+.+++..+++.|+....+       +.--+|..|..+|..++...+.   ..+++.+..++++.
T Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~~~~~~~l~~~l~~~  378 (462)
T 1ibr_B          299 EAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNP  378 (462)
T ss_dssp             CTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTCS
T ss_pred             cccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCC
Confidence                         112345678899998887753       2346899999999999998762   22455667788899


Q ss_pred             CHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhh
Q 020587          212 NPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSVYEK  275 (324)
Q Consensus       212 Np~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~~  275 (324)
                      ++.+|..++..|..+.+..+...+.. .++.+++.+..++.|.++.+|.+|-.++..+...++.
T Consensus       379 ~~~~r~aal~~l~~l~~~~~~~~~~~-~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~  441 (462)
T 1ibr_B          379 DWRYRDAAVMAFGCILEGPEPSQLKP-LVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPE  441 (462)
T ss_dssp             SHHHHHHHHHHHHHTSSSSCTTTTCT-TTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGG
T ss_pred             ChHHHHHHHHHHHHHhcCCcHHHHHH-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccc
Confidence            99999999999999998544333333 3678999999999999999999999999988887765

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=98.89  E-value=8.8e-08  Score=82.77  Aligned_cols=186  Identities=18%  Similarity=0.181  Sum_probs=140.5

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhh-hHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhh
Q 020587           83 SVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILG-DVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDL  161 (324)
Q Consensus        83 ~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~-~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~  161 (324)
                      ....+...|.++|+..+..|+..|+.|+..+++.....+. .+++.++..+++....|...|+.+++.|...-.......
T Consensus        13 ~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i   92 (210)
T 4db6_A           13 ELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV   92 (210)
T ss_dssp             CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred             hhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHH
Confidence            3446777788999999999999999999776655443332 578889999999999999999999999875332222222


Q ss_pred             H-HHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcCh-------hhhHHHHhhhccCCCHHHHHHHHHHHHhhccccccc
Q 020587          162 L-DPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSP-------ILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVE  233 (324)
Q Consensus       162 ~-d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~-------~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~  233 (324)
                      + ...++.|+....+.+.-+++.|-.+|..++.+...       ...++.|...+++.++.+|..++..|..++..- .+
T Consensus        93 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~-~~  171 (210)
T 4db6_A           93 IDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NE  171 (210)
T ss_dssp             HHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSC-HH
T ss_pred             HHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-cH
Confidence            2 23678888888888899999999999998864332       236788888999999999999999999988742 22


Q ss_pred             chhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 020587          234 GIKEYGIDKLIQVAASQLSDQLPESREAARTLLLEL  269 (324)
Q Consensus       234 ~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L  269 (324)
                      ..........++.+..++.+.++++|+.|..++..|
T Consensus       172 ~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l  207 (210)
T 4db6_A          172 QKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL  207 (210)
T ss_dssp             HHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence            111111234677888899999999999999988755

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=98.81  E-value=3.5e-07  Score=94.45  Aligned_cols=192  Identities=14%  Similarity=0.125  Sum_probs=153.7

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhh-hHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhh-----
Q 020587           83 SVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILG-DVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYND-----  156 (324)
Q Consensus        83 ~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~-~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~-----  156 (324)
                      .+..+...+.+.+|+.|..++..+.+++..+|+.+.+.+. .++..+...+.+....|...|+.++..++.....     
T Consensus       225 ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~  304 (861)
T 2bpt_A          225 LMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYEL  304 (861)
T ss_dssp             HHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            3445555667889999999999999999988887778888 8888899999999999999999999888877421     


Q ss_pred             ------------hHHhhHHHHHHHHHHHhcC-------ChHHHHHHHHHHHHHHHhhcCh---hhhHHHHhhhccCCCHH
Q 020587          157 ------------RMIDLLDPLLVQLLLKSSQ-------DKRFVCEAAEKALVAMTTWVSP---ILLLPKLQPYLKNRNPR  214 (324)
Q Consensus       157 ------------~m~~~~d~ll~~LL~Ka~~-------sk~FI~e~A~~AL~amv~~vs~---~~ll~~L~~~~~hKNp~  214 (324)
                                  .+.+++..+++.|+..+.+       +.--++..+..+|..++.....   ..+++.+...+++.++.
T Consensus       305 ~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~  384 (861)
T 2bpt_A          305 AQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWR  384 (861)
T ss_dssp             HHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHH
T ss_pred             hhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHcCCCChh
Confidence                        2456778999999988763       2346888999999998887652   33666677888899999


Q ss_pred             HHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhh
Q 020587          215 IRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSVYEK  275 (324)
Q Consensus       215 VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~~  275 (324)
                      +|..++..+..+.+..+...+..+ ++.+++.+...+.|.++.+|..+-.++..+...++.
T Consensus       385 ~r~~a~~~l~~i~~~~~~~~~~~~-l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~  444 (861)
T 2bpt_A          385 NREAAVMAFGSIMDGPDKVQRTYY-VHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAE  444 (861)
T ss_dssp             HHHHHHHHHHHTSSSSCHHHHHHH-HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGG
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHH-HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhh
Confidence            999999999998875443334333 778999999999999999999998888777766653

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=98.78  E-value=5.6e-07  Score=78.87  Aligned_cols=192  Identities=20%  Similarity=0.129  Sum_probs=145.3

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhh-hhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhh
Q 020587           83 SVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDIL-GDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDL  161 (324)
Q Consensus        83 ~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L-~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~  161 (324)
                      .+..++..|.+.+...+..++..|..|+..+++.....+ ..+++.++..+++....|...|+.+++.|+..-.......
T Consensus        45 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~  124 (252)
T 4hxt_A           45 GVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAI  124 (252)
T ss_dssp             HHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred             CHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            466778888999999999999999999887665444333 2478889999999999999999999999985332222222


Q ss_pred             H-HHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChh-------hhHHHHhhhccCCCHHHHHHHHHHHHhhccccccc
Q 020587          162 L-DPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPI-------LLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVE  233 (324)
Q Consensus       162 ~-d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~-------~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~  233 (324)
                      + ...++.|+....+.+.-++..+-.+|..++......       ..++.|...+++.++.+|..++..|..+...- ..
T Consensus       125 ~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~  203 (252)
T 4hxt_A          125 VDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP-TS  203 (252)
T ss_dssp             HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSB-HH
T ss_pred             HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-HH
Confidence            2 246788888888888889999999999887653322       27788889999999999999999999988631 11


Q ss_pred             chhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhh
Q 020587          234 GIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSVYEK  275 (324)
Q Consensus       234 ~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~~  275 (324)
                      ......-..+++.+..++.+.++++|+.|-.++..|....+.
T Consensus       204 ~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~  245 (252)
T 4hxt_A          204 AIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGGWL  245 (252)
T ss_dssp             HHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTCBC
T ss_pred             HHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCCCc
Confidence            111112234678888899999999999999999877765543

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=98.77  E-value=1.6e-07  Score=96.90  Aligned_cols=192  Identities=16%  Similarity=0.151  Sum_probs=153.7

Q ss_pred             HHHHHHHhhcCCCCH-HHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHh
Q 020587           82 TSVKTLVAGLDSKDW-VVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMID  160 (324)
Q Consensus        82 ~~L~~~l~~L~s~dW-~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~  160 (324)
                      ..+..++..+++.++ ..+..++..+..++....+.+.+.+..+++.+...+++-...+...|+.++++|+..+|..+.+
T Consensus       597 ~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~  676 (861)
T 2bpt_A          597 MLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRR  676 (861)
T ss_dssp             HHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHH
T ss_pred             HHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhchhccc
Confidence            345555666666667 7788888888888776555455678888888888888777889999999999999999999999


Q ss_pred             hHHHHHHHHHHHhcCCh--HHHHHHHHHHHHHHHhhcChh------hhHHHHhhhccCCC-----------HHHHHHHHH
Q 020587          161 LLDPLLVQLLLKSSQDK--RFVCEAAEKALVAMTTWVSPI------LLLPKLQPYLKNRN-----------PRIRAKASM  221 (324)
Q Consensus       161 ~~d~ll~~LL~Ka~~sk--~FI~e~A~~AL~amv~~vs~~------~ll~~L~~~~~hKN-----------p~VR~~aa~  221 (324)
                      +++.+++.|+....+.+  .-+++.+-.++..|+.++...      .++|.|...+.+..           ..+|..+..
T Consensus       677 ~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~  756 (861)
T 2bpt_A          677 YSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLD  756 (861)
T ss_dssp             HHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHH
Confidence            99999999999887654  779999999999999877442      46666666665432           568999999


Q ss_pred             HHHhhcccccc--cchhhccHHHHHHHHHHhccCC----CHHHHHHHHHHHHHHHHHhh
Q 020587          222 CFSRSVPRLGV--EGIKEYGIDKLIQVAASQLSDQ----LPESREAARTLLLELQSVYE  274 (324)
Q Consensus       222 ~L~~~v~~~g~--~~i~~~~~~~ll~~l~~~L~D~----~pEvR~~AR~~l~~L~~~~~  274 (324)
                      .+..++..+|.  ..+..+ ++.+++.+.+.+.|.    +.++|..|-.++..|...|+
T Consensus       757 ~~~~i~~~l~~~~~~~~~~-~~~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~~~~  814 (861)
T 2bpt_A          757 AYVGIVAGLHDKPEALFPY-VGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFP  814 (861)
T ss_dssp             HHHHHHHHTTTCHHHHGGG-HHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHccCHHHHHHH-HHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHHHcC
Confidence            99999988773  223333 788888898888885    89999999999999999883

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=98.75  E-value=7.8e-07  Score=77.96  Aligned_cols=188  Identities=20%  Similarity=0.148  Sum_probs=142.9

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhh-hhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhh
Q 020587           83 SVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDIL-GDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDL  161 (324)
Q Consensus        83 ~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L-~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~  161 (324)
                      .+..++..|.+.++..+..|+..|+.++..+++...... ..+++.++..+++....|...|+.+++.|...-.......
T Consensus         3 ~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~   82 (252)
T 4hxt_A            3 DVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAI   82 (252)
T ss_dssp             HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred             cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHH
Confidence            356788899999999999999999999988774443333 3578889999999999999999999999875422222222


Q ss_pred             HH-HHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChh-------hhHHHHhhhccCCCHHHHHHHHHHHHhhccccccc
Q 020587          162 LD-PLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPI-------LLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVE  233 (324)
Q Consensus       162 ~d-~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~-------~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~  233 (324)
                      ++ ..++.|+....+.+.-+++.|-.+|..++......       ..++.|...+++.++.+|..++..|..+.......
T Consensus        83 ~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~  162 (252)
T 4hxt_A           83 VDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEA  162 (252)
T ss_dssp             HHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred             HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHH
Confidence            22 36777888887888999999999999988643322       36778889999999999999999999988742211


Q ss_pred             chhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 020587          234 GIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQS  271 (324)
Q Consensus       234 ~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~  271 (324)
                       ........+++.+..++.+.++++|..|-.++..|..
T Consensus       163 -~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~  199 (252)
T 4hxt_A          163 -IKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS  199 (252)
T ss_dssp             -HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred             -HHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHc
Confidence             1111123477888889999999999999988876653

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=98.75  E-value=6.6e-07  Score=97.35  Aligned_cols=190  Identities=12%  Similarity=0.136  Sum_probs=154.7

Q ss_pred             HHhhcCCCCHHHHHHHHHHHHHHHhHc-------------------HHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHH
Q 020587           87 LVAGLDSKDWVVVCEALNNVRRLSIFH-------------------KEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTA  147 (324)
Q Consensus        87 ~l~~L~s~dW~~r~eaL~~LRrLa~~h-------------------~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl  147 (324)
                      ++..+.+.++..|..++..+..+....                   ...+...++.+++.+.+.+++-...+-..+|.++
T Consensus       379 l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L  458 (1230)
T 1u6g_C          379 LISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNML  458 (1230)
T ss_dssp             HHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred             HHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHH
Confidence            334455667888888988888776521                   2345667888888888989988888888899999


Q ss_pred             HHHHHHhhhhHHhhHHHHHHHHHHHhcCCh--HHHHHHHHHHHHHHHhhcChh-------hhHHHHhhhccCCCHHHHHH
Q 020587          148 ADIFSAYNDRMIDLLDPLLVQLLLKSSQDK--RFVCEAAEKALVAMTTWVSPI-------LLLPKLQPYLKNRNPRIRAK  218 (324)
Q Consensus       148 ~dLf~~L~~~m~~~~d~ll~~LL~Ka~~sk--~FI~e~A~~AL~amv~~vs~~-------~ll~~L~~~~~hKNp~VR~~  218 (324)
                      +++...++..+.++++.+++.++..+.+.+  ..++.++-.++..++....+.       .++|.|..+++++++.||..
T Consensus       459 ~~l~~~~~~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~  538 (1230)
T 1u6g_C          459 TELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSE  538 (1230)
T ss_dssp             HHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHH
T ss_pred             HHHHHHchhhhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccchHHHHH
Confidence            999999988899999999999999998875  488999999999998876655       46777778889999999999


Q ss_pred             HHHHHHhhcccccc------cchhhccHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHHHHhhhcC
Q 020587          219 ASMCFSRSVPRLGV------EGIKEYGIDKLIQVAASQL--SDQLPESREAARTLLLELQSVYEKSH  277 (324)
Q Consensus       219 aa~~L~~~v~~~g~------~~i~~~~~~~ll~~l~~~L--~D~~pEvR~~AR~~l~~L~~~~~~~a  277 (324)
                      +...+..+++.+|.      ..+..+ .+.+++.+...+  .|.++++|..|-.++..|...+++..
T Consensus       539 al~~l~~l~~~~~~~~~~~~~~~~~~-~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~  604 (1230)
T 1u6g_C          539 ALLVTQQLVKVIRPLDQPSSFDATPY-IKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNL  604 (1230)
T ss_dssp             HHHHHHHHHHHHCCSSSCCCCCCHHH-HHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGC
T ss_pred             HHHHHHHHHHHhcCcccccccchHHH-HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCchh
Confidence            98889888887765      223334 688899988888  89999999999999999988877553

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=98.74  E-value=2.3e-07  Score=96.05  Aligned_cols=189  Identities=16%  Similarity=0.151  Sum_probs=141.1

Q ss_pred             HHHHHhhcCCC-CHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccC--cchHHHHHHHHHHHHHHHHhhhhHHh
Q 020587           84 VKTLVAGLDSK-DWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKN--PRSAVCKTAIMTAADIFSAYNDRMID  160 (324)
Q Consensus        84 L~~~l~~L~s~-dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vks--LRS~Vsk~A~~tl~dLf~~L~~~m~~  160 (324)
                      +..++..|.+. +|..+..++..+..|+....+.+.+.+.+++..+...+++  ....+...++.++++++..+|..|.+
T Consensus       651 ~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~  730 (876)
T 1qgr_A          651 KPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKK  730 (876)
T ss_dssp             HHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGG
T ss_pred             HHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchhHHH
Confidence            34445555554 7888999999998887755444556678888888888876  44568889999999999999999999


Q ss_pred             hHHHHHHHHHHHhcCCh-----------HHHHHHHHHHHHHHHhhcCh----------------hhhHHHHhhhccCC--
Q 020587          161 LLDPLLVQLLLKSSQDK-----------RFVCEAAEKALVAMTTWVSP----------------ILLLPKLQPYLKNR--  211 (324)
Q Consensus       161 ~~d~ll~~LL~Ka~~sk-----------~FI~e~A~~AL~amv~~vs~----------------~~ll~~L~~~~~hK--  211 (324)
                      +++.+++.|+.......           .-+++.+..++..++.....                ..+++.|.....+.  
T Consensus       731 ~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~  810 (876)
T 1qgr_A          731 YLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDH  810 (876)
T ss_dssp             GHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHHTCSCC
T ss_pred             HHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCcccccchHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            99999999887665331           37888899999988876532                11233333333565  


Q ss_pred             CHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHH-hccCCCHHHHHHHHHHHHHHHHH
Q 020587          212 NPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAAS-QLSDQLPESREAARTLLLELQSV  272 (324)
Q Consensus       212 Np~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~-~L~D~~pEvR~~AR~~l~~L~~~  272 (324)
                      +..||..++.+|..++..+|...+..+-.+.+++.+.. ++.|.++++|..|..++..+.+.
T Consensus       811 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~i~~ll~~~l~~~~~~~r~~a~~a~~~~~~~  872 (876)
T 1qgr_A          811 TDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGRRSKTNKAKTLARWATKELRKL  872 (876)
T ss_dssp             CHHHHHHHHHHHHHHHHHHCTHHHHHHHTSHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHhCcHHHHHHHhcHHHHHHHHHHhhcCCHhHHHHHHHHHHHHHHh
Confidence            78999999999999999987723433323445555555 88999999999999999877754

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=98.74  E-value=5.4e-07  Score=94.44  Aligned_cols=188  Identities=19%  Similarity=0.162  Sum_probs=148.0

Q ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHHHHhH--cHHHHHHhhhhHHHHHHHHc-----------cC-----------cchHH
Q 020587           84 VKTLVAGLDSKDWVVVCEALNNVRRLSIF--HKEAMLDILGDVIPLVVKSL-----------KN-----------PRSAV  139 (324)
Q Consensus        84 L~~~l~~L~s~dW~~r~eaL~~LRrLa~~--h~~~l~~~L~~iv~~l~~~v-----------ks-----------LRS~V  139 (324)
                      +..++..+++.|...+..|+..+..++.+  ....+.+.+..+++.+...+           .+           ....|
T Consensus       258 ~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~v  337 (852)
T 4fdd_A          258 VEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNL  337 (852)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCH
T ss_pred             HHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchH
Confidence            44455566788999999999999998753  23455667777888887776           33           45568


Q ss_pred             HHHHHHHHHHHHHHhhhhHHhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcCh------hhhHHHHhhhccCCCH
Q 020587          140 CKTAIMTAADIFSAYNDRMIDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSP------ILLLPKLQPYLKNRNP  213 (324)
Q Consensus       140 sk~A~~tl~dLf~~L~~~m~~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~------~~ll~~L~~~~~hKNp  213 (324)
                      .+.|..+++.|+..+++.   .++.+++.|.....+.+--+|+.|-.+|..+...+..      ..+++.|...+++.++
T Consensus       338 r~~a~~~L~~la~~~~~~---~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~  414 (852)
T 4fdd_A          338 RKCSAAALDVLANVYRDE---LLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKA  414 (852)
T ss_dssp             HHHHHHHHHHHHHHHGGG---GHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSH
T ss_pred             HHHHHHHHHHHHHhccHH---HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCH
Confidence            899999999999999854   4456677777777777899999999999999887643      3477888899999999


Q ss_pred             HHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhh
Q 020587          214 RIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSVYEK  275 (324)
Q Consensus       214 ~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~~  275 (324)
                      .||..++..+..+.+..+...... ....+++.+.+.+.|.++++|..|-.++..+....+.
T Consensus       415 ~Vr~~a~~~l~~l~~~~~~~~~~~-~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~  475 (852)
T 4fdd_A          415 LVRSITCWTLSRYAHWVVSQPPDT-YLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACT  475 (852)
T ss_dssp             HHHHHHHHHHHHTHHHHHHSCTTT-THHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGG
T ss_pred             HHHHHHHHHHHHHHHHhccchHHH-HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhH
Confidence            999999999998887665433222 3788999999999999999999999999877766553

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=98.73  E-value=2.6e-07  Score=81.89  Aligned_cols=188  Identities=18%  Similarity=0.162  Sum_probs=141.4

Q ss_pred             HHHHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhh-hhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHh
Q 020587           82 TSVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDIL-GDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMID  160 (324)
Q Consensus        82 ~~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L-~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~  160 (324)
                      ..+..++..|.++|.+.+..|+..|+.+...+++.....+ ..+++.++..+++....|...|+.+++.|...-......
T Consensus        12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~   91 (252)
T 4db8_A           12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA   91 (252)
T ss_dssp             CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred             chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            3466889999999999999999999987765544333222 357888999999988999999999999998643322222


Q ss_pred             hHH-HHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChh-------hhHHHHhhhccCCCHHHHHHHHHHHHhhcccccc
Q 020587          161 LLD-PLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPI-------LLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGV  232 (324)
Q Consensus       161 ~~d-~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~-------~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~  232 (324)
                      .++ ..++.|+....+.+.-+++.|-.+|..+..+-...       ..++.|...+++.++.+|..++..|.++...-. 
T Consensus        92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-  170 (252)
T 4db8_A           92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN-  170 (252)
T ss_dssp             HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH-
T ss_pred             HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCh-
Confidence            232 37888888888888999999999999887654433       367788889999999999999999999886421 


Q ss_pred             cchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 020587          233 EGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQ  270 (324)
Q Consensus       233 ~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~  270 (324)
                      .......-..+++.+..++.+.++++|..|-.++..|-
T Consensus       171 ~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~  208 (252)
T 4db8_A          171 EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA  208 (252)
T ss_dssp             HHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHh
Confidence            11111112345677788889999999999988887664

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=98.71  E-value=8.2e-07  Score=91.85  Aligned_cols=193  Identities=17%  Similarity=0.164  Sum_probs=153.5

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhh-hHHHHHHHHccCcchHHHHHHHHHHHHHHHHhh------
Q 020587           83 SVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILG-DVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYN------  155 (324)
Q Consensus        83 ~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~-~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~------  155 (324)
                      .+..+...+.+.||+.|..++..+-.++..+++.+.+.+. .++..+...+++.-..|...|+.++..+.....      
T Consensus       218 il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~  297 (876)
T 1qgr_A          218 IMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEA  297 (876)
T ss_dssp             HHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhh
Confidence            3555566677889999999999999999988888888888 899989888888888899999988888876531      


Q ss_pred             ---------------hhHHhhHHHHHHHHHHHhc-------CChHHHHHHHHHHHHHHHhhcCh---hhhHHHHhhhccC
Q 020587          156 ---------------DRMIDLLDPLLVQLLLKSS-------QDKRFVCEAAEKALVAMTTWVSP---ILLLPKLQPYLKN  210 (324)
Q Consensus       156 ---------------~~m~~~~d~ll~~LL~Ka~-------~sk~FI~e~A~~AL~amv~~vs~---~~ll~~L~~~~~h  210 (324)
                                     ..+.++++.+++.|+..+.       ++.--+|..|..+|..++..++.   ..+++.+...+++
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~l~~~l~~  377 (876)
T 1qgr_A          298 SEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKN  377 (876)
T ss_dssp             HHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTC
T ss_pred             ccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHhhHHHHHHHHHHHccC
Confidence                           1123456788898888875       23456889999999999988753   2355667788889


Q ss_pred             CCHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhc
Q 020587          211 RNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSVYEKS  276 (324)
Q Consensus       211 KNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~~~  276 (324)
                      .++.+|..++..+..+.+..+++.+..+ ++.+++.+..+++|.++.+|..|-.++..+...++..
T Consensus       378 ~~~~~r~~a~~~l~~i~~~~~~~~~~~~-~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~  442 (876)
T 1qgr_A          378 PDWRYRDAAVMAFGCILEGPEPSQLKPL-VIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEA  442 (876)
T ss_dssp             SSHHHHHHHHHHHHHTSSSSCHHHHHHH-HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGG
T ss_pred             CChHHHHHHHHHHHHHHcCCCHHHHHHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchh
Confidence            9999999999999988876653333333 6789999999999999999999999998888777653

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=98.70  E-value=5.2e-07  Score=98.18  Aligned_cols=190  Identities=14%  Similarity=0.090  Sum_probs=155.2

Q ss_pred             HHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcch--HHHHHHHHHHHHHHHHhhhh-HHhhH
Q 020587           86 TLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRS--AVCKTAIMTAADIFSAYNDR-MIDLL  162 (324)
Q Consensus        86 ~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS--~Vsk~A~~tl~dLf~~L~~~-m~~~~  162 (324)
                      .+...+.+++|..|..++..+..++...++.+.+.++.+++.+...+++-..  .|...++.+++.++..++.. +.+++
T Consensus       438 ~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l  517 (1230)
T 1u6g_C          438 ALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHV  517 (1230)
T ss_dssp             HHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHH
T ss_pred             HHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHH
Confidence            3444588999999999999999998877777777889999999999998764  78889999999999888755 89999


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcCh-------------hhhHHHHhhhc--cCCCHHHHHHHHHHHHhhc
Q 020587          163 DPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSP-------------ILLLPKLQPYL--KNRNPRIRAKASMCFSRSV  227 (324)
Q Consensus       163 d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~-------------~~ll~~L~~~~--~hKNp~VR~~aa~~L~~~v  227 (324)
                      +.+++.|+....+.+.-|+..+-.++..++..+.+             ..+++.|...+  .+.++.+|..+..++..++
T Consensus       518 ~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~  597 (1230)
T 1u6g_C          518 QALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQII  597 (1230)
T ss_dssp             TTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence            99999999999998888888888899999977654             35777777777  6788999999999999988


Q ss_pred             ccccccchhh--------------------------------------ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 020587          228 PRLGVEGIKE--------------------------------------YGIDKLIQVAASQLSDQLPESREAARTLLLEL  269 (324)
Q Consensus       228 ~~~g~~~i~~--------------------------------------~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L  269 (324)
                      ...|..-...                                      .....+++.+..++.|.+..+|..+-.++..+
T Consensus       598 ~~~g~~~~~~~~~~l~~L~~~l~~e~~r~~~~~al~~i~~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~r~~a~~al~~l  677 (1230)
T 1u6g_C          598 CNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDIL  677 (1230)
T ss_dssp             HHTGGGCCTHHHHHHHHHHHHTTSSSHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHH
T ss_pred             HHhCchhhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            8776531100                                      01356677778888899999999999999988


Q ss_pred             HHHhhh
Q 020587          270 QSVYEK  275 (324)
Q Consensus       270 ~~~~~~  275 (324)
                      ...++.
T Consensus       678 ~~~~~~  683 (1230)
T 1u6g_C          678 IKNYSD  683 (1230)
T ss_dssp             HHHCCT
T ss_pred             Hhcccc
Confidence            877764

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=98.69  E-value=4.8e-07  Score=80.10  Aligned_cols=185  Identities=19%  Similarity=0.181  Sum_probs=140.4

Q ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhh-hHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhH
Q 020587           84 VKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILG-DVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLL  162 (324)
Q Consensus        84 L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~-~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~  162 (324)
                      +..++..|.+.++..+..|+..|..|+..+++.-...+. ..++.++..+++....|...|+.+++.|...-.......+
T Consensus        56 i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~  135 (252)
T 4db8_A           56 LPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI  135 (252)
T ss_dssp             HHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHH
Confidence            345677788889999999999999998866655443332 4788899999999999999999999999765444433333


Q ss_pred             H-HHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcCh-------hhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccc
Q 020587          163 D-PLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSP-------ILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEG  234 (324)
Q Consensus       163 d-~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~-------~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~  234 (324)
                      + ..++.|+..+.+.+.-++..|-.+|..++.+...       ..+++.|...+++.++.+|..++..|..++..- ...
T Consensus       136 ~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~  214 (252)
T 4db8_A          136 DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQ  214 (252)
T ss_dssp             HTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSC-HHH
T ss_pred             HCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCC-HHH
Confidence            3 3788888888888888999999999988864422       336778888899999999999999999998531 111


Q ss_pred             hhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 020587          235 IKEYGIDKLIQVAASQLSDQLPESREAARTLLLEL  269 (324)
Q Consensus       235 i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L  269 (324)
                      .....-...++.+..++.+.++++|..|-.++..|
T Consensus       215 ~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l  249 (252)
T 4db8_A          215 KQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL  249 (252)
T ss_dssp             HHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTT
T ss_pred             HHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            11111234678888999999999999998887644

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=98.62  E-value=1.1e-06  Score=76.15  Aligned_cols=168  Identities=16%  Similarity=0.145  Sum_probs=92.2

Q ss_pred             HHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhHc--HHHHH-----------------Hhh--hhHHHHHHHHccCcchHH
Q 020587           81 DTSVKTLVAGLDSKDWVVVCEALNNVRRLSIFH--KEAML-----------------DIL--GDVIPLVVKSLKNPRSAV  139 (324)
Q Consensus        81 e~~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h--~~~l~-----------------~~L--~~iv~~l~~~vksLRS~V  139 (324)
                      ...+..++..|.++||..|..|+..|.++....  +.++.                 +.+  .+.++.+...+++....|
T Consensus        18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~v   97 (211)
T 3ltm_A           18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWV   97 (211)
T ss_dssp             GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHH
T ss_pred             HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHH
Confidence            455677888888889988888888877653200  10000                 011  123444455555555555


Q ss_pred             HHHHHHHHHHHHHHhhhhHHhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhhhHHHHhhhccCCCHHHHHHH
Q 020587          140 CKTAIMTAADIFSAYNDRMIDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPILLLPKLQPYLKNRNPRIRAKA  219 (324)
Q Consensus       140 sk~A~~tl~dLf~~L~~~m~~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~ll~~L~~~~~hKNp~VR~~a  219 (324)
                      -..|+.+++.+..          +..++.|+..+.+.+..|+..|-.+|..+    .....++.|...+++.++.||..+
T Consensus        98 r~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~----~~~~~~~~L~~~l~d~~~~vr~~a  163 (211)
T 3ltm_A           98 RQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEI----GDERAVEPLIKALKDEDGWVRQSA  163 (211)
T ss_dssp             HHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHH----CCGGGHHHHHHHTTCSSHHHHHHH
T ss_pred             HHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHcCCCHHHHHHH
Confidence            5555555544311          12334444444555566666666666554    233455555555666666666666


Q ss_pred             HHHHHhhcccccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhh
Q 020587          220 SMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSVYE  274 (324)
Q Consensus       220 a~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~  274 (324)
                      +..|..+            +-+..++.+..++.|.++++|..|..++..+...++
T Consensus       164 ~~aL~~~------------~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~~  206 (211)
T 3ltm_A          164 ADALGEI------------GGERVRAAMEKLAETGTGFARKVAVNYLETHKSFNH  206 (211)
T ss_dssp             HHHHHHH------------CSHHHHHHHHHHHHHCCHHHHHHHHHHHHC------
T ss_pred             HHHHHHh------------CchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC
Confidence            6555543            124566667777778888888888887765544433

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=98.58  E-value=1.4e-06  Score=83.08  Aligned_cols=193  Identities=18%  Similarity=0.091  Sum_probs=146.0

Q ss_pred             HHHHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhh-hhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHh
Q 020587           82 TSVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDIL-GDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMID  160 (324)
Q Consensus        82 ~~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L-~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~  160 (324)
                      ..+..++..+.+.|+..+..++..|+.|+.+.++...... ..+++.++..+++....|...|+.+++.|..........
T Consensus       192 ~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~  271 (450)
T 2jdq_A          192 PCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQV  271 (450)
T ss_dssp             GGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred             HHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHH
Confidence            3466777788889999999999999999886655443222 357888889999888999999999999998654433322


Q ss_pred             hHH-HHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcCh-------hhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccc
Q 020587          161 LLD-PLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSP-------ILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGV  232 (324)
Q Consensus       161 ~~d-~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~-------~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~  232 (324)
                      .++ .+++.|+..+.+.+.-++..|-.+|..++.....       ..+++.|...+++.++.||..++..|.++.....+
T Consensus       272 ~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~  351 (450)
T 2jdq_A          272 ILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSA  351 (450)
T ss_dssp             HHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCH
T ss_pred             HHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCH
Confidence            222 4778888888888889999999999988764322       35777888888899999999999999998875333


Q ss_pred             cchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhh
Q 020587          233 EGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSVYE  274 (324)
Q Consensus       233 ~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~  274 (324)
                      +.+...--..+++.+..++.+.++++|..+-.++..|....+
T Consensus       352 ~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~  393 (450)
T 2jdq_A          352 EQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGE  393 (450)
T ss_dssp             HHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhch
Confidence            322222123477888889999999999999988887776554

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=98.56  E-value=1.9e-06  Score=82.13  Aligned_cols=188  Identities=19%  Similarity=0.146  Sum_probs=139.6

Q ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhh-hHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhH
Q 020587           84 VKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILG-DVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLL  162 (324)
Q Consensus        84 L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~-~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~  162 (324)
                      +..++..|.+.+|..+..++..|..|+..+++.....+. .+++.+...+++....|.+.|+.+++.|...-.......+
T Consensus       236 i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~  315 (450)
T 2jdq_A          236 CRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVI  315 (450)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred             HHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            556777788999999999999999998877655433332 5788899999999999999999999999864333333333


Q ss_pred             H-HHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChh--------hhHHHHhhhccCCCHHHHHHHHHHHHhhccccccc
Q 020587          163 D-PLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPI--------LLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVE  233 (324)
Q Consensus       163 d-~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~--------~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~  233 (324)
                      + .+++.|+..+.+...-++..|..+|..++...++.        .+++.|...+++.++.||..++..|..++......
T Consensus       316 ~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~  395 (450)
T 2jdq_A          316 DANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQE  395 (450)
T ss_dssp             HTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhh
Confidence            2 57777777777777889999999999998775442        36778888889999999999999999888743221


Q ss_pred             ------chhhccHHHH-----HHHHHHhccCCCHHHHHHHHHHHHHHHHHhhh
Q 020587          234 ------GIKEYGIDKL-----IQVAASQLSDQLPESREAARTLLLELQSVYEK  275 (324)
Q Consensus       234 ------~i~~~~~~~l-----l~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~~  275 (324)
                            .+..+ .+.+     ++.+..++.+.+.++|+.|..++.   ..|++
T Consensus       396 ~~~~~~~~~~~-~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~---~~~~~  444 (450)
T 2jdq_A          396 AKRNGTGINPY-CALIEEAYGLDKIEFLQSHENQEIYQKAFDLIE---HYFGT  444 (450)
T ss_dssp             HHHSCSCCCHH-HHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHH---HHHCC
T ss_pred             hhccccchhHH-HHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHH---HHCCc
Confidence                  01111 2222     345566788889999988887775   55543

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=98.55  E-value=1.6e-06  Score=85.82  Aligned_cols=193  Identities=17%  Similarity=0.088  Sum_probs=146.4

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhh-hHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhh
Q 020587           83 SVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILG-DVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDL  161 (324)
Q Consensus        83 ~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~-~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~  161 (324)
                      .+..++..|.+.|+..+..++..|..|+...++.....+. .+++.++..+++....|...|+.+++.|...-.......
T Consensus       258 ~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~  337 (530)
T 1wa5_B          258 ALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVV  337 (530)
T ss_dssp             GHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHH
Confidence            4667777788889999999999999999877765544443 678889999999999999999999999875433322222


Q ss_pred             HH-HHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcCh-------hhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccc-
Q 020587          162 LD-PLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSP-------ILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGV-  232 (324)
Q Consensus       162 ~d-~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~-------~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~-  232 (324)
                      ++ .+++.|+..+.+.+.-++..|-.+|..++.....       ..+++.|...+++.++.+|..++..|..++...+. 
T Consensus       338 ~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~  417 (530)
T 1wa5_B          338 INAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQR  417 (530)
T ss_dssp             HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCc
Confidence            22 5778888888888889999999999988764322       24677788888889999999999999998875333 


Q ss_pred             -cchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhh
Q 020587          233 -EGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSVYEK  275 (324)
Q Consensus       233 -~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~~  275 (324)
                       +.........+++.+..++.+.++++|..+-.++..|....+.
T Consensus       418 ~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~  461 (530)
T 1wa5_B          418 PDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEA  461 (530)
T ss_dssp             THHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhh
Confidence             2222111223677788889999999999999888877766554

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.54  E-value=1.5e-06  Score=77.56  Aligned_cols=149  Identities=15%  Similarity=0.186  Sum_probs=123.7

Q ss_pred             HHHHHHHhhcC-CCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHh
Q 020587           82 TSVKTLVAGLD-SKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMID  160 (324)
Q Consensus        82 ~~L~~~l~~L~-s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~  160 (324)
                      ..+..+...+. +.+-..+..|++.+..|+..-...+.+....+++.+...+++.+..|...|+.++..++..++     
T Consensus        56 ~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~-----  130 (242)
T 2qk2_A           56 ALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS-----  130 (242)
T ss_dssp             HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC-----
T ss_pred             HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC-----
Confidence            34555666664 788889999999999998754444567788899999999999999999999999999988653     


Q ss_pred             hHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChh--------hhHHHHhhhccCCCHHHHHHHHHHHHhhcccccc
Q 020587          161 LLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPI--------LLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGV  232 (324)
Q Consensus       161 ~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~--------~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~  232 (324)
                       ++.+++.|+....+.+..++..+-..|..++....+.        .++|.|...+.+.++.||..+..++..+...+|.
T Consensus       131 -~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~  209 (242)
T 2qk2_A          131 -LEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGD  209 (242)
T ss_dssp             -HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCH
T ss_pred             -HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCH
Confidence             5778888888888889999999999999988776433        4778889999999999999999999999998886


Q ss_pred             cchh
Q 020587          233 EGIK  236 (324)
Q Consensus       233 ~~i~  236 (324)
                      +.+.
T Consensus       210 ~~~~  213 (242)
T 2qk2_A          210 KAVT  213 (242)
T ss_dssp             HHHG
T ss_pred             HHHH
Confidence            5443

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=98.54  E-value=2.2e-06  Score=73.80  Aligned_cols=120  Identities=17%  Similarity=0.190  Sum_probs=66.9

Q ss_pred             HHHHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhh
Q 020587           82 TSVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDL  161 (324)
Q Consensus        82 ~~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~  161 (324)
                      .....+++.|+++||..|..|+..|.++..          .+.+..++..+++....|-..|+.+++.+..         
T Consensus        14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~---------   74 (201)
T 3ltj_A           14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD---------   74 (201)
T ss_dssp             HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC---------
T ss_pred             cchHHHHHHhcCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC---------
Confidence            556788899999999999999888876632          1233444455555555555555555544311         


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhhhHHHHhhhccCCCHHHHHHHHHHHHh
Q 020587          162 LDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPILLLPKLQPYLKNRNPRIRAKASMCFSR  225 (324)
Q Consensus       162 ~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~ll~~L~~~~~hKNp~VR~~aa~~L~~  225 (324)
                       ...++.|+..+.+.+..++..|-.+|..+    .....++.|...+++.++.||..++..|..
T Consensus        75 -~~~~~~L~~~l~d~~~~vr~~a~~aL~~~----~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~  133 (201)
T 3ltj_A           75 -ERAVEPLIKALKDEDGWVRQSAAVALGQI----GDERAVEPLIKALKDEDWFVRIAAAFALGE  133 (201)
T ss_dssp             -GGGHHHHHHHTTCSSHHHHHHHHHHHHHH----CCGGGHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHcCCCHHHHHHHHHHHHHh----CcHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence             12233334444444555555555555443    223344555555555555555555555443

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=98.54  E-value=3.2e-06  Score=73.31  Aligned_cols=121  Identities=19%  Similarity=0.198  Sum_probs=94.0

Q ss_pred             hHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhhhHH
Q 020587          123 DVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPILLLP  202 (324)
Q Consensus       123 ~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~ll~  202 (324)
                      +.++.++..+++....|-..|+.+++.+..          +..++.|+..+.+.+..++..|-.+|..+    .....++
T Consensus        50 ~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~----~~~~~~~  115 (211)
T 3ltm_A           50 RAVEPLIKALKDEDAWVRRAAADALGQIGD----------ERAVEPLIKALKDEDGWVRQSAAVALGQI----GDERAVE  115 (211)
T ss_dssp             GGHHHHHHHTTCSCHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHH----CCGGGHH
T ss_pred             cHHHHHHHHHcCCCHHHHHHHHHHHHhhCC----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHh----CcHHHHH
Confidence            577888899999888888888888877631          23456666667788888999988888765    3356788


Q ss_pred             HHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 020587          203 KLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLEL  269 (324)
Q Consensus       203 ~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L  269 (324)
                      .|...+++.++.||..++..|..+    |.        +..++.+..++.|.++++|..|-.++..+
T Consensus       116 ~L~~~l~d~~~~vr~~a~~aL~~~----~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~  170 (211)
T 3ltm_A          116 PLIKALKDEDWFVRIAAAFALGEI----GD--------ERAVEPLIKALKDEDGWVRQSAADALGEI  170 (211)
T ss_dssp             HHHHHTTCSSHHHHHHHHHHHHHH----CC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHc----CC--------HHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence            888888999999999999888765    22        12456677788999999999999888654

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=98.52  E-value=5.7e-06  Score=71.12  Aligned_cols=152  Identities=18%  Similarity=0.172  Sum_probs=119.0

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhH
Q 020587           83 SVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLL  162 (324)
Q Consensus        83 ~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~  162 (324)
                      .+..++..|.++||..|..++..|.++..          .+.++.+...+++....|-..|+.+++.+..          
T Consensus        46 ~~~~L~~~l~~~~~~vr~~a~~~L~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------  105 (201)
T 3ltj_A           46 AVEPLIKALKDEDAWVRRAAADALGQIGD----------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------  105 (201)
T ss_dssp             GHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHhhCC----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------
Confidence            34566777888899999888887766521          2456777888999999999999998887631          


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHH
Q 020587          163 DPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDK  242 (324)
Q Consensus       163 d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~  242 (324)
                      +..++.|+..+.+.+..|+..|..+|..+    .....++.|...+++.++.||..++..|..+    |        .+.
T Consensus       106 ~~~~~~L~~~l~d~~~~vr~~a~~aL~~~----~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~----~--------~~~  169 (201)
T 3ltj_A          106 ERAVEPLIKALKDEDWFVRIAAAFALGEI----GDERAVEPLIKALKDEDGWVRQSAADALGEI----G--------GER  169 (201)
T ss_dssp             GGGHHHHHHHTTCSSHHHHHHHHHHHHHH----TCGGGHHHHHHHTTCSSHHHHHHHHHHHHHH----C--------SHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHh----CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHh----C--------chh
Confidence            12455666666788899999999999876    3456888889999999999999999988765    2        245


Q ss_pred             HHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 020587          243 LIQVAASQLSDQLPESREAARTLLLELQ  270 (324)
Q Consensus       243 ll~~l~~~L~D~~pEvR~~AR~~l~~L~  270 (324)
                      .++.+..++.|.++++|..|..++..+.
T Consensus       170 ~~~~L~~~l~d~~~~vr~~A~~aL~~l~  197 (201)
T 3ltj_A          170 VRAAMEKLAETGTGFARKVAVNYLETHK  197 (201)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence            6777888889999999999999987554

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=98.49  E-value=6.2e-06  Score=78.51  Aligned_cols=193  Identities=12%  Similarity=0.058  Sum_probs=144.7

Q ss_pred             HHHHHHhhcCCC--CHHHHHHHHHHHHHHHhHc-HHHHHHhhhhHHHHHHHHccCc--chHHHHHHHHHHHHHHHHhhhh
Q 020587           83 SVKTLVAGLDSK--DWVVVCEALNNVRRLSIFH-KEAMLDILGDVIPLVVKSLKNP--RSAVCKTAIMTAADIFSAYNDR  157 (324)
Q Consensus        83 ~L~~~l~~L~s~--dW~~r~eaL~~LRrLa~~h-~~~l~~~L~~iv~~l~~~vksL--RS~Vsk~A~~tl~dLf~~L~~~  157 (324)
                      .+..++..+.+.  ||..+..|+..++.++... ++.+...+..++..+...+++.  ...|-+.|+.+++.+...++..
T Consensus       129 ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~  208 (462)
T 1ibr_B          129 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKAN  208 (462)
T ss_dssp             HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHH
T ss_pred             HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence            456677777777  9999999999999998755 6666677788888899999988  6788889999999887666655


Q ss_pred             HHhh--HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcCh------h-hhHHHHhhhccCCCHHHHHHHHHHHHhhcc
Q 020587          158 MIDL--LDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSP------I-LLLPKLQPYLKNRNPRIRAKASMCFSRSVP  228 (324)
Q Consensus       158 m~~~--~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~------~-~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~  228 (324)
                      ++.+  .+.+++.|.....+...-++..+-.+|..++.....      . .+++.+...+++.++.||..+..++..+++
T Consensus       209 ~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~  288 (462)
T 1ibr_B          209 FDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCD  288 (462)
T ss_dssp             HTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHH
Confidence            5432  234566666556666788999999999999876543      2 677777778889999999999999888876


Q ss_pred             cc-------------------cccchhhccHHHHHHHHHHhccC-------CCHHHHHHHHHHHHHHHHHhhh
Q 020587          229 RL-------------------GVEGIKEYGIDKLIQVAASQLSD-------QLPESREAARTLLLELQSVYEK  275 (324)
Q Consensus       229 ~~-------------------g~~~i~~~~~~~ll~~l~~~L~D-------~~pEvR~~AR~~l~~L~~~~~~  275 (324)
                      ..                   ....+.......+++.+.+.+.+       .++.+|..|-.++..|...+++
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~  361 (462)
T 1ibr_B          289 EEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED  361 (462)
T ss_dssp             HHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH
Confidence            52                   00011111247788888777753       4578999999999988888773

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=98.49  E-value=3.3e-06  Score=83.58  Aligned_cols=189  Identities=15%  Similarity=0.097  Sum_probs=139.5

Q ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhh-hhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhH
Q 020587           84 VKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDIL-GDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLL  162 (324)
Q Consensus        84 L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L-~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~  162 (324)
                      +..++..|.+.+|..+..|+..|..|+..+++.....+ ..+++.++..+.+....|.+.|+.+++.|...-...+...+
T Consensus       301 v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~  380 (530)
T 1wa5_B          301 PKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVI  380 (530)
T ss_dssp             HHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred             HHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            45667778889999999999999999877665443333 35788899999999999999999999999864433333333


Q ss_pred             H-HHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcCh----------hhhHHHHhhhccCCCHHHHHHHHHHHHhhccccc
Q 020587          163 D-PLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSP----------ILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLG  231 (324)
Q Consensus       163 d-~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~----------~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g  231 (324)
                      + .+++.|+..+.+...-++..|..+|..++...++          ..+++.|...+.+.++.||..++..|..++....
T Consensus       381 ~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~  460 (530)
T 1wa5_B          381 DANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGE  460 (530)
T ss_dssp             HTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhh
Confidence            2 4566666666666778999999999999887654          2367788888899999999999999998887532


Q ss_pred             cc------chhhc----cHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhh
Q 020587          232 VE------GIKEY----GIDKLIQVAASQLSDQLPESREAARTLLLELQSVYEK  275 (324)
Q Consensus       232 ~~------~i~~~----~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~~  275 (324)
                      ..      .+..+    .-...++.+..++++.++++|+.|..++.   .+|..
T Consensus       461 ~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~---~~~~~  511 (530)
T 1wa5_B          461 ADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIE---TYFGE  511 (530)
T ss_dssp             HHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHH---HHSSS
T ss_pred             hhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHH---HHCCc
Confidence            21      01111    11123566778899999999998887775   55543

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=98.46  E-value=3.1e-06  Score=77.22  Aligned_cols=156  Identities=12%  Similarity=0.102  Sum_probs=130.5

Q ss_pred             HHHHHHHhhc-CCCCHHHHHHHHHHHHHHHhHcH-HHHH-HhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhH
Q 020587           82 TSVKTLVAGL-DSKDWVVVCEALNNVRRLSIFHK-EAML-DILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRM  158 (324)
Q Consensus        82 ~~L~~~l~~L-~s~dW~~r~eaL~~LRrLa~~h~-~~l~-~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m  158 (324)
                      ..+..+...| ++.+-..+..|++.|..|+..-. ..+. +....+++.++..+++-+..|...|..++..++..+.. .
T Consensus        60 ~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~-~  138 (249)
T 2qk1_A           60 NLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDP-L  138 (249)
T ss_dssp             HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCT-T
T ss_pred             HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccc-c
Confidence            4466666667 57788888999999999986544 3455 67778899999999999999999999999999998765 3


Q ss_pred             Hhh--HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcC----------hhhhHHHHhhhccCCCHHHHHHHHHHHHhh
Q 020587          159 IDL--LDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVS----------PILLLPKLQPYLKNRNPRIRAKASMCFSRS  226 (324)
Q Consensus       159 ~~~--~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs----------~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~  226 (324)
                      ..+  ++.+++.|+.-+...|..+++.+-.+|...+....          +..++|.|..++.+.++.||..+..++..+
T Consensus       139 ~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i  218 (249)
T 2qk1_A          139 ASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAIL  218 (249)
T ss_dssp             CTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred             ccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence            344  89999999988888899999999999999998876          256888899999999999999999999999


Q ss_pred             cccccccchhhc
Q 020587          227 VPRLGVEGIKEY  238 (324)
Q Consensus       227 v~~~g~~~i~~~  238 (324)
                      ...+|.+.+..+
T Consensus       219 ~~~vG~~~~~p~  230 (249)
T 2qk1_A          219 IKIFGMNTFVKT  230 (249)
T ss_dssp             HHHHCSGGGHHH
T ss_pred             HHHhCHHHHHHH
Confidence            999998765544

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=98.43  E-value=4.1e-06  Score=82.61  Aligned_cols=193  Identities=18%  Similarity=0.118  Sum_probs=145.3

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhh-hHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhh
Q 020587           83 SVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILG-DVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDL  161 (324)
Q Consensus        83 ~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~-~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~  161 (324)
                      .+..++..|.+.||..+..++..|..|+.+.++.....+. .+++.++..+++....|...|+.+++.|...-.......
T Consensus       245 ~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~  324 (528)
T 4b8j_A          245 ALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCI  324 (528)
T ss_dssp             HHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHH
Confidence            4667777888999999999999999998776655433332 578889999999999999999999999987443333333


Q ss_pred             H-HHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHhhcCh-------hhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccc
Q 020587          162 L-DPLLVQLLLKSSQD-KRFVCEAAEKALVAMTTWVSP-------ILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGV  232 (324)
Q Consensus       162 ~-d~ll~~LL~Ka~~s-k~FI~e~A~~AL~amv~~vs~-------~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~  232 (324)
                      + ..+++.|+..+.+. +.-++..|..+|..++.....       ..+++.|...+.+.++.+|..++..|.++......
T Consensus       325 ~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~  404 (528)
T 4b8j_A          325 IDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSH  404 (528)
T ss_dssp             HTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCH
T ss_pred             HHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCH
Confidence            2 23567777777676 889999999999988864322       24567788888888999999999999998875333


Q ss_pred             cchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhh
Q 020587          233 EGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSVYEK  275 (324)
Q Consensus       233 ~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~~  275 (324)
                      +......-..+++.+..++.+.++++|..+-.++..|....+.
T Consensus       405 ~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~  447 (528)
T 4b8j_A          405 DQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGET  447 (528)
T ss_dssp             HHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence            3222111234677888899999999999999998888766654

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=98.34  E-value=1.4e-05  Score=72.14  Aligned_cols=127  Identities=10%  Similarity=0.024  Sum_probs=68.5

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhH
Q 020587           83 SVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLL  162 (324)
Q Consensus        83 ~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~  162 (324)
                      .+..++..|.++||..|..|+..|..+.  .+        +.++.+...+++....|-..|+.+++.+...     ...+
T Consensus        24 ~i~~L~~~L~~~~~~vr~~A~~~L~~~~--~~--------~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~-----~~~~   88 (280)
T 1oyz_A           24 NDDELFRLLDDHNSLKRISSARVLQLRG--GQ--------DAVRLAIEFCSDKNYIRRDIGAFILGQIKIC-----KKCE   88 (280)
T ss_dssp             CHHHHHHHTTCSSHHHHHHHHHHHHHHC--CH--------HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCC-----TTTH
T ss_pred             hHHHHHHHHHcCCHHHHHHHHHHHHccC--Cc--------hHHHHHHHHHcCCCHHHHHHHHHHHHHhccc-----cccc
Confidence            3567888899999999999998888764  22        2334445555566666666666555544210     1112


Q ss_pred             HHHHHHHHHH-hcCChHHHHHHHHHHHHHHHhhcC--hhhhHHHHhhhccCCCHHHHHHHHHHHH
Q 020587          163 DPLLVQLLLK-SSQDKRFVCEAAEKALVAMTTWVS--PILLLPKLQPYLKNRNPRIRAKASMCFS  224 (324)
Q Consensus       163 d~ll~~LL~K-a~~sk~FI~e~A~~AL~amv~~vs--~~~ll~~L~~~~~hKNp~VR~~aa~~L~  224 (324)
                      +.+++.|... ..+.+..|+..+-.+|..+....+  ...+++.|...+++.++.||..++..|.
T Consensus        89 ~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~  153 (280)
T 1oyz_A           89 DNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAIS  153 (280)
T ss_dssp             HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence            2233333321 234445555555555555543221  2334555555555555555555555544

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=98.30  E-value=2.3e-05  Score=73.57  Aligned_cols=191  Identities=13%  Similarity=-0.013  Sum_probs=137.1

Q ss_pred             CHHHHHHHHHhhcCCC------------CHHHHHHHHHHHHHHHhHcH--HHHHHhhhhHHHHHHH-HccCcchHHHHHH
Q 020587           79 DIDTSVKTLVAGLDSK------------DWVVVCEALNNVRRLSIFHK--EAMLDILGDVIPLVVK-SLKNPRSAVCKTA  143 (324)
Q Consensus        79 dpe~~L~~~l~~L~s~------------dW~~r~eaL~~LRrLa~~h~--~~l~~~L~~iv~~l~~-~vksLRS~Vsk~A  143 (324)
                      |+-..|+.++.-|.+.            +=+.++.||..|..++....  ..+ ..++ .++.++. .+++....|-..|
T Consensus        25 d~~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~~dna~~~-~~~G-~l~~Lv~~lL~s~~~~vr~~A  102 (296)
T 1xqr_A           25 GEVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADF-CQLS-GMHLLVGRYLEAGAAGLRWRA  102 (296)
T ss_dssp             HHHHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHH-HHTT-HHHHHHHTTTTCSSHHHHHHH
T ss_pred             CHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhChhhHHHH-HHcC-CHHHHHHHHHcCCCHHHHHHH
Confidence            4456788888888763            23579999999999976322  112 1223 4567778 8999999999999


Q ss_pred             HHHHHHHHHHhhhhHHhhHH-HHHHHHHHHhc-CChHHHHHHHHHHHHHHHhhcChh-------hhHHHHhhhccCCCHH
Q 020587          144 IMTAADIFSAYNDRMIDLLD-PLLVQLLLKSS-QDKRFVCEAAEKALVAMTTWVSPI-------LLLPKLQPYLKNRNPR  214 (324)
Q Consensus       144 ~~tl~dLf~~L~~~m~~~~d-~ll~~LL~Ka~-~sk~FI~e~A~~AL~amv~~vs~~-------~ll~~L~~~~~hKNp~  214 (324)
                      +.+++.++..-...-+..++ ..++.|+..+. +.+.-+++.|-.||..++.+-.+.       ..++.|...+++.++.
T Consensus       103 a~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~  182 (296)
T 1xqr_A          103 AQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQK  182 (296)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHH
Confidence            99999998642221111222 46677776665 446788999999999998765442       2566788888999999


Q ss_pred             HHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Q 020587          215 IRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSV  272 (324)
Q Consensus       215 VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~  272 (324)
                      +|..++..|..+... +.+......-..+++.+..+|...++++|+.|-.++..|...
T Consensus       183 v~~~A~~aLs~L~~~-~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~  239 (296)
T 1xqr_A          183 LKVKSAFLLQNLLVG-HPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTD  239 (296)
T ss_dssp             HHHHHHHHHHHHHHH-CGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhC-ChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence            999999999998875 333222222334667778889999999999999999877655

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=98.30  E-value=1.9e-05  Score=77.86  Aligned_cols=185  Identities=16%  Similarity=0.061  Sum_probs=136.1

Q ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhh-hhHHHHHHHHccCc-chHHHHHHHHHHHHHHHHhhhhHHhh
Q 020587           84 VKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDIL-GDVIPLVVKSLKNP-RSAVCKTAIMTAADIFSAYNDRMIDL  161 (324)
Q Consensus        84 L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L-~~iv~~l~~~vksL-RS~Vsk~A~~tl~dLf~~L~~~m~~~  161 (324)
                      +..++..|.+.+|..+..|+..|..|+...+......+ ..+++.++..+++. ...|.++||.+++.|...-.......
T Consensus       288 v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~  367 (528)
T 4b8j_A          288 CPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAV  367 (528)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred             HHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence            45677778889999999999999999886665544333 45778888888888 89999999999999986433333332


Q ss_pred             HH-HHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChh--------hhHHHHhhhccCCCHHHHHHHHHHHHhhcccccc
Q 020587          162 LD-PLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPI--------LLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGV  232 (324)
Q Consensus       162 ~d-~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~--------~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~  232 (324)
                      ++ .+++.|+..+.+...-++..|-.+|..++.+.++.        .+++.|...+.+.++.++..++..|..++.....
T Consensus       368 ~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~  447 (528)
T 4b8j_A          368 INAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGET  447 (528)
T ss_dssp             HHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence            22 45677776666667789999999999998885543        3667788888999999999999999999875322


Q ss_pred             c---------chhh-ccHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Q 020587          233 E---------GIKE-YGIDKLIQVAASQLSDQLPESREAARTLLLE  268 (324)
Q Consensus       233 ~---------~i~~-~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~  268 (324)
                      .         .... ..-...++.+..+..+.++++++.|..++..
T Consensus       448 ~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~  493 (528)
T 4b8j_A          448 DKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEA  493 (528)
T ss_dssp             HHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHH
T ss_pred             hhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            1         0111 0111224556677899999999999888753

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=98.15  E-value=9.2e-05  Score=66.76  Aligned_cols=163  Identities=17%  Similarity=0.125  Sum_probs=117.3

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHH-HHccCcchHHHHHHHHHHHHHHHHhhhhHHhh
Q 020587           83 SVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVV-KSLKNPRSAVCKTAIMTAADIFSAYNDRMIDL  161 (324)
Q Consensus        83 ~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~-~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~  161 (324)
                      .+..++..|.+++|..|..|+..|.++... +.    .+..++..+. ...++....|-..|+.+++.+.....    .+
T Consensus        55 ~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~-~~----~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~----~~  125 (280)
T 1oyz_A           55 AVRLAIEFCSDKNYIRRDIGAFILGQIKIC-KK----CEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNP----IY  125 (280)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHSCCC-TT----THHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GG
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHhccc-cc----cchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC----cc
Confidence            456677778889999888888877766421 11    1222333333 23567778888999998888765432    23


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHH
Q 020587          162 LDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGID  241 (324)
Q Consensus       162 ~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~  241 (324)
                      .+.+++.|+....+.+..||..|-.+|..+-    ....++.|...+++.++.||..++..|..+    +..      .+
T Consensus       126 ~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~----~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~----~~~------~~  191 (280)
T 1oyz_A          126 SPKIVEQSQITAFDKSTNVRRATAFAISVIN----DKATIPLLINLLKDPNGDVRNWAAFAININ----KYD------NS  191 (280)
T ss_dssp             HHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-------CCHHHHHHHHTCSSHHHHHHHHHHHHHH----TCC------CH
T ss_pred             cHHHHHHHHHHhhCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHcCCCHHHHHHHHHHHHhh----ccC------cH
Confidence            4567788888888889999999998887643    355888888889999999999999888654    211      34


Q ss_pred             HHHHHHHHhccCCCHHHHHHHHHHHHH
Q 020587          242 KLIQVAASQLSDQLPESREAARTLLLE  268 (324)
Q Consensus       242 ~ll~~l~~~L~D~~pEvR~~AR~~l~~  268 (324)
                      ..++.+..++.|.++++|..|-.++..
T Consensus       192 ~~~~~L~~~l~d~~~~vR~~A~~aL~~  218 (280)
T 1oyz_A          192 DIRDCFVEMLQDKNEEVRIEAIIGLSY  218 (280)
T ss_dssp             HHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence            567788889999999999998888754

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=98.14  E-value=9.2e-05  Score=63.50  Aligned_cols=146  Identities=19%  Similarity=0.223  Sum_probs=114.1

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhh-hhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhh
Q 020587           83 SVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDIL-GDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDL  161 (324)
Q Consensus        83 ~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L-~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~  161 (324)
                      .+..++..|.+.++..+..|+..|..|+..+++.....+ ...++.++..+++....|.+.|+.+++.|...-.......
T Consensus        55 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~  134 (210)
T 4db6_A           55 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV  134 (210)
T ss_dssp             HHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred             CHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            356677888899999999999999999876665443333 3478889999999999999999999999986433332222


Q ss_pred             H-HHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChh-------hhHHHHhhhccCCCHHHHHHHHHHHHhhcc
Q 020587          162 L-DPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPI-------LLLPKLQPYLKNRNPRIRAKASMCFSRSVP  228 (324)
Q Consensus       162 ~-d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~-------~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~  228 (324)
                      + ...++.|+..+.+.+.-+++.|-.+|..++.+....       ..++.|...+.+.++.+|..++..|..+..
T Consensus       135 ~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  209 (210)
T 4db6_A          135 IDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS  209 (210)
T ss_dssp             HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred             HHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence            2 247888888888778899999999999998764332       356778888899999999999999887653

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=98.09  E-value=1.6e-05  Score=85.67  Aligned_cols=148  Identities=18%  Similarity=0.236  Sum_probs=128.0

Q ss_pred             hHHHHHHHHccCcchHHHHHHHHHHHHHHHHhh--hhHHhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhh-
Q 020587          123 DVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYN--DRMIDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPIL-  199 (324)
Q Consensus       123 ~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~--~~m~~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~-  199 (324)
                      .++..+.+.+++=.+.  -.||..++.|++..+  ..++||+-.+++.+|...+|....|+++|..|+++++..++|.. 
T Consensus        54 ~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~  131 (986)
T 2iw3_A           54 HFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI  131 (986)
T ss_dssp             HHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH
T ss_pred             hHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH
Confidence            5677788888888888  899999999997775  58899999999999999999999999999999999999999844 


Q ss_pred             --hHHHHhhhccCC-CHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhh
Q 020587          200 --LLPKLQPYLKNR-NPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSVYE  274 (324)
Q Consensus       200 --ll~~L~~~~~hK-Np~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~  274 (324)
                        ++|.|..++++. -.+.+..+..++..+++.. +. .....+..+++.+..++.|--+||..+|++++..+-...+
T Consensus       132 ~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~-~~-~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~  207 (986)
T 2iw3_A          132 KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA-KD-QVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVD  207 (986)
T ss_dssp             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS-HH-HHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCC
T ss_pred             HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh-HH-HHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCC
Confidence              788898998765 4899999999999999865 33 3344599999999999999999999999999986665543

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=98.08  E-value=8.6e-05  Score=75.20  Aligned_cols=176  Identities=15%  Similarity=0.150  Sum_probs=125.1

Q ss_pred             HHHHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhh
Q 020587           82 TSVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDL  161 (324)
Q Consensus        82 ~~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~  161 (324)
                      ..+.++-+.|++.|=.++.+++..+-.+-....     ........+++.+.+....+-|.+...+..++..-    ...
T Consensus        13 ~e~~~i~~~L~~~~~~~k~~~~~kli~~~~~G~-----d~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~----~e~   83 (591)
T 2vgl_B           13 GEIFELKAELNNEKKEKRKEAVKKVIAAMTVGK-----DVSSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQ----PDM   83 (591)
T ss_dssp             SHHHHHHHHTTSSCHHHHHHHHHHHHHHHHTTC-----CCGGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHS----HHH
T ss_pred             ChHHHHHHHHcCCCHHHHHHHHHHHHHHHHCCC-----ChHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccC----chH
Confidence            356778888888887788888887766533221     23444556777889999888888888887775531    122


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHH
Q 020587          162 LDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGID  241 (324)
Q Consensus       162 ~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~  241 (324)
                      +-.+++.|.+-..+.+.++|..|-++|..+...--...+++.|...+.|.||.||.+++.++.++... +++.+.   -.
T Consensus        84 ~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~-~p~~~~---~~  159 (591)
T 2vgl_B           84 AIMAVNSFVKDCEDPNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDI-NAQMVE---DQ  159 (591)
T ss_dssp             HHTTHHHHGGGSSSSSHHHHHHHHHHHHTCCSGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHS-SCCCHH---HH
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhh-Chhhcc---cc
Confidence            34455666677888899999877555544321111133666688999999999999999999999884 344222   24


Q ss_pred             HHHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 020587          242 KLIQVAASQLSDQLPESREAARTLLLELQ  270 (324)
Q Consensus       242 ~ll~~l~~~L~D~~pEvR~~AR~~l~~L~  270 (324)
                      .+++.+..+|+|.++.||..|-.++..+.
T Consensus       160 ~~~~~l~~lL~d~d~~V~~~A~~aL~~i~  188 (591)
T 2vgl_B          160 GFLDSLRDLIADSNPMVVANAVAALSEIS  188 (591)
T ss_dssp             HHHHHHHHTTSCSCHHHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHhCCCChhHHHHHHHHHHHHH
Confidence            68899999999999999999987776543

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=98.07  E-value=6.7e-05  Score=76.00  Aligned_cols=183  Identities=14%  Similarity=0.105  Sum_probs=122.6

Q ss_pred             HHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhh-HHhhHHH
Q 020587           86 TLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDR-MIDLLDP  164 (324)
Q Consensus        86 ~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~-m~~~~d~  164 (324)
                      .+...|.+.++.-|..|...+.++...+|+.+..  ..++..+...+.|....|..+|+.+++++...-... ..+....
T Consensus       125 ~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~--~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~  202 (591)
T 2vgl_B          125 PLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVED--QGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQ  202 (591)
T ss_dssp             HHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHH--HHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHH
T ss_pred             HHHHHcCCCChHHHHHHHHHHHHHHhhChhhccc--ccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHH
Confidence            3556667777877877887777777666654421  356677778888888888888888888876543211 1223345


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHHHHhhcCh-----hhhHHHHhhhccCCCHHHHHHHHHHHHhhcccc--cccchhh
Q 020587          165 LLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSP-----ILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRL--GVEGIKE  237 (324)
Q Consensus       165 ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~-----~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~--g~~~i~~  237 (324)
                      .+..|+....+.+.|.+-..   |+.+...++.     ..+++.|...++|.|+.|+..++.++..+...+  +++.+. 
T Consensus       203 ~~~~Ll~~l~~~~~~~q~~i---l~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~-  278 (591)
T 2vgl_B          203 NINKLLTALNECTEWGQIFI---LDCLSNYNPKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYN-  278 (591)
T ss_dssp             HHHHHHHHHHHCCHHHHHHH---HHHHHTSCCCSHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHH-
T ss_pred             HHHHHHHcCCCCCchHHHHH---HHHHHHhCCCChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHH-
Confidence            56666666666667765533   3333333332     357888889999999999999999999887654  222222 


Q ss_pred             ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhh
Q 020587          238 YGIDKLIQVAASQLSDQLPESREAARTLLLELQSVYEK  275 (324)
Q Consensus       238 ~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~~  275 (324)
                      .-.+++.+.+..+ .+.++++|+.|-+.+..+...+++
T Consensus       279 ~~~~~~~~~L~~L-~~~d~~vr~~aL~~l~~i~~~~p~  315 (591)
T 2vgl_B          279 MLLKKLAPPLVTL-LSGEPEVQYVALRNINLIVQKRPE  315 (591)
T ss_dssp             HHHHHTHHHHHHH-TTSCHHHHHHHHHHHHHHHHHCCS
T ss_pred             HHHHHHHHHHHHH-hcCCccHHHHHHHHHHHHHHhChH
Confidence            1134555555544 468999999999999988877654

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=98.03  E-value=0.00016  Score=72.02  Aligned_cols=196  Identities=16%  Similarity=0.102  Sum_probs=140.4

Q ss_pred             HHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHh-hhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHH
Q 020587           81 DTSVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDI-LGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMI  159 (324)
Q Consensus        81 e~~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~-L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~  159 (324)
                      ...+..+...|.+.+-+.+.+++..|..++.++.+..... -..+++.++..+.+....|...|+.+++.|+..-.....
T Consensus       250 ~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~  329 (529)
T 3tpo_A          250 EQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQ  329 (529)
T ss_dssp             HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             hhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHH
Confidence            3456677777888888889999999999988766544322 235778888999999999999999999998643221111


Q ss_pred             hhH-HHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcCh-------hhhHHHHhhhccCCCHHHHHHHHHHHHhhccccc
Q 020587          160 DLL-DPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSP-------ILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLG  231 (324)
Q Consensus       160 ~~~-d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~-------~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g  231 (324)
                      ..+ ...++.|+......+.-|+..|..+|.-++.+...       ..++|.|...+++.+..+|..++..|.++...-.
T Consensus       330 ~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~  409 (529)
T 3tpo_A          330 KVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGT  409 (529)
T ss_dssp             HHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSC
T ss_pred             HHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCC
Confidence            111 12456666667777888999999999988765332       2367778888899999999999999988876432


Q ss_pred             ccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhc
Q 020587          232 VEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSVYEKS  276 (324)
Q Consensus       232 ~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~~~  276 (324)
                      .+.+....-..+++.+..+|...+++++..+-.++..+....++.
T Consensus       410 ~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~  454 (529)
T 3tpo_A          410 VEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKL  454 (529)
T ss_dssp             HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhc
Confidence            222211111224666778899999999999988888776665543

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=98.01  E-value=6.5e-05  Score=74.64  Aligned_cols=195  Identities=17%  Similarity=0.118  Sum_probs=139.8

Q ss_pred             HHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHh-hhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHH
Q 020587           81 DTSVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDI-LGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMI  159 (324)
Q Consensus        81 e~~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~-L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~  159 (324)
                      ...+..+...|.+.+.+.+..++..|+.|+.+..+..... -..+++.++..+.+....|...|+.+++.|+..-.....
T Consensus       231 ~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~  310 (510)
T 3ul1_B          231 EQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQ  310 (510)
T ss_dssp             HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             HhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHH
Confidence            3456677778889999999999999999988766544322 234778888999999999999999999988654322211


Q ss_pred             hhHH-HHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcCh-------hhhHHHHhhhccCCCHHHHHHHHHHHHhhccccc
Q 020587          160 DLLD-PLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSP-------ILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLG  231 (324)
Q Consensus       160 ~~~d-~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~-------~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g  231 (324)
                      ..++ ..++.|+....+.+.-++..|..+|..++.+...       ..+++.|...+++.+..+|..++..|.++...-.
T Consensus       311 ~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~  390 (510)
T 3ul1_B          311 KVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGT  390 (510)
T ss_dssp             HHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCC
T ss_pred             HHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCC
Confidence            1121 2455555666677888999999999887654332       2367778888899999999999999998876432


Q ss_pred             ccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhh
Q 020587          232 VEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSVYEK  275 (324)
Q Consensus       232 ~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~~  275 (324)
                      .+.+....-...++.+..+|...+++++..+-.++..+.+..++
T Consensus       391 ~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~  434 (510)
T 3ul1_B          391 VEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEK  434 (510)
T ss_dssp             HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHh
Confidence            32221111223466777889999999999998888777666554

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=97.96  E-value=0.00041  Score=68.97  Aligned_cols=188  Identities=15%  Similarity=0.130  Sum_probs=133.9

Q ss_pred             HHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhh-hhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhHH
Q 020587           85 KTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDIL-GDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLD  163 (324)
Q Consensus        85 ~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L-~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d  163 (324)
                      ..++..|.+.++..+..++..|..|+.+.++.....+ ..+++.+...+++....+.++||.+++.|+..-.......++
T Consensus       296 ~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~  375 (529)
T 3tpo_A          296 PQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVN  375 (529)
T ss_dssp             HHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred             HHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHh
Confidence            4566777889999999999999999876554332222 345677888899999999999999999998754444333333


Q ss_pred             -HHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhh--------hHHHHhhhccCCCHHHHHHHHHHHHhhcccc---c
Q 020587          164 -PLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPIL--------LLPKLQPYLKNRNPRIRAKASMCFSRSVPRL---G  231 (324)
Q Consensus       164 -~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~--------ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~---g  231 (324)
                       .+++.|+....+...-++.+|..||..++.+.++..        +++.|...+.++++.++..+...|.++++..   +
T Consensus       376 ~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~  455 (529)
T 3tpo_A          376 HGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLG  455 (529)
T ss_dssp             TTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             cCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhcc
Confidence             477888877777778899999999998888776643        4667788889999999999999998887632   1


Q ss_pred             cc-chhhc-cHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhh
Q 020587          232 VE-GIKEY-GIDKLIQVAASQLSDQLPESREAARTLLLELQSVYEK  275 (324)
Q Consensus       232 ~~-~i~~~-~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~~  275 (324)
                      .. .+... .---.++.+-.+....+.++++.|.+++.   ..|+.
T Consensus       456 ~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie---~yf~~  498 (529)
T 3tpo_A          456 ETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIE---KYFSV  498 (529)
T ss_dssp             CHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHH---HHC--
T ss_pred             ChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHH---HHCCC
Confidence            11 11000 00011334556778999999998887774   55653

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=97.95  E-value=0.00073  Score=63.21  Aligned_cols=188  Identities=14%  Similarity=0.170  Sum_probs=130.3

Q ss_pred             HHHHHh-hcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhh-hHHHHHHHHcc-CcchHHHHHHHHHHHHHHHHhhhhHHh
Q 020587           84 VKTLVA-GLDSKDWVVVCEALNNVRRLSIFHKEAMLDILG-DVIPLVVKSLK-NPRSAVCKTAIMTAADIFSAYNDRMID  160 (324)
Q Consensus        84 L~~~l~-~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~-~iv~~l~~~vk-sLRS~Vsk~A~~tl~dLf~~L~~~m~~  160 (324)
                      +..++. .|.+.+=.-+..|+..|..++..+|..-...+. ..++.++..++ +....|-++|+-+++-|..........
T Consensus        83 l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~  162 (296)
T 1xqr_A           83 MHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQ  162 (296)
T ss_dssp             HHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHH
Confidence            456777 788888888889999999998877653322222 45666777776 457899999999999998776655544


Q ss_pred             hHH-HHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcCh-------hhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccc
Q 020587          161 LLD-PLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSP-------ILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGV  232 (324)
Q Consensus       161 ~~d-~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~-------~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~  232 (324)
                      +.+ ..++.|+..+.+...-++..|..+|..++..-..       .-+++.|...+.+.++.||..++..|..++.. +.
T Consensus       163 ~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~-~~  241 (296)
T 1xqr_A          163 FLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTD-FP  241 (296)
T ss_dssp             HHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT-CH
T ss_pred             HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhC-Ch
Confidence            443 4677777776666788899999999998876221       23666788888999999999999999999875 22


Q ss_pred             cchhh-----ccHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHHHHhhh
Q 020587          233 EGIKE-----YGIDKLIQVAASQLS--DQLPESREAARTLLLELQSVYEK  275 (324)
Q Consensus       233 ~~i~~-----~~~~~ll~~l~~~L~--D~~pEvR~~AR~~l~~L~~~~~~  275 (324)
                      .....     ..+..+++.....+.  +.+.|.++++.+++   ...|.+
T Consensus       242 ~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il---~~~f~~  288 (296)
T 1xqr_A          242 QGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLL---QTCFSS  288 (296)
T ss_dssp             HHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHH---HHHCC-
T ss_pred             hHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHH---HHHcCC
Confidence            21211     124455544455555  34566666665555   566754

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=97.81  E-value=0.0018  Score=62.76  Aligned_cols=183  Identities=16%  Similarity=0.130  Sum_probs=119.3

Q ss_pred             HHHHHHhhcC-CCCHHHHHHHHHHHHHHHhHcHHHHHHh-hhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHh
Q 020587           83 SVKTLVAGLD-SKDWVVVCEALNNVRRLSIFHKEAMLDI-LGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMID  160 (324)
Q Consensus        83 ~L~~~l~~L~-s~dW~~r~eaL~~LRrLa~~h~~~l~~~-L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~  160 (324)
                      .+..++..|. +.||..+..++..|+.|+.. ++..... -...++.++..+++....+...|+.++..|+..-......
T Consensus        60 ~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~-~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~  138 (529)
T 1jdh_A           60 MVSAIVRTMQNTNDVETARCTAGTLHNLSHH-REGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMA  138 (529)
T ss_dssp             HHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHH
T ss_pred             hHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC-chhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHH
Confidence            3455566665 45999999999999999764 3322111 1257888899999988999999999999998764322221


Q ss_pred             hH-HHHHHHHHHHhcCChHHHHHHHHHHHHHHHhh-----------------------cC--------------------
Q 020587          161 LL-DPLLVQLLLKSSQDKRFVCEAAEKALVAMTTW-----------------------VS--------------------  196 (324)
Q Consensus       161 ~~-d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~-----------------------vs--------------------  196 (324)
                      .. ...++.|+..+.+.+.-++..+..+|..+...                       .+                    
T Consensus       139 i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~  218 (529)
T 1jdh_A          139 VRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSS  218 (529)
T ss_dssp             HHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTT
T ss_pred             HHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcc
Confidence            11 23556666655554444444444344322211                       00                    


Q ss_pred             ------hhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 020587          197 ------PILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQ  270 (324)
Q Consensus       197 ------~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~  270 (324)
                            ....++.|...+++.++.+|..++..|..+.......    .....+++.+.+++.+.++++|..|-.++..|.
T Consensus       219 ~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~----~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~  294 (529)
T 1jdh_A          219 NKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ----EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLT  294 (529)
T ss_dssp             HHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTC----SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred             cHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhh----HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence                  0124555666777778888888888887776543211    124578889999999999999999887777653

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=97.76  E-value=0.00077  Score=66.86  Aligned_cols=189  Identities=15%  Similarity=0.139  Sum_probs=133.7

Q ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhh-hhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhH
Q 020587           84 VKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDIL-GDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLL  162 (324)
Q Consensus        84 L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L-~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~  162 (324)
                      +..++..|.+.++..+..++..|..|+.+.+......+ ..+++.+...+++.+..+-+.||.+++.|+..-.......+
T Consensus       276 i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~  355 (510)
T 3ul1_B          276 VPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVV  355 (510)
T ss_dssp             HHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred             chhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence            34566778889999999999999999776554332222 23556677888999999999999999999765443333333


Q ss_pred             H-HHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhh--------hHHHHhhhccCCCHHHHHHHHHHHHhhcccc---
Q 020587          163 D-PLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPIL--------LLPKLQPYLKNRNPRIRAKASMCFSRSVPRL---  230 (324)
Q Consensus       163 d-~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~--------ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~---  230 (324)
                      + .+++.|+....+...-++.+|..||..++.+.++..        +++.|...++++++.++..+...|.++++..   
T Consensus       356 ~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~  435 (510)
T 3ul1_B          356 NHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKL  435 (510)
T ss_dssp             HTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTT
T ss_pred             hcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhc
Confidence            2 477888888877788899999999998888776643        4567788889999999999999998888642   


Q ss_pred             cccc-hhh-ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhh
Q 020587          231 GVEG-IKE-YGIDKLIQVAASQLSDQLPESREAARTLLLELQSVYEK  275 (324)
Q Consensus       231 g~~~-i~~-~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~~  275 (324)
                      +... +.. +.-.-.++.+-.+....+.++++.|..++   .+.|+.
T Consensus       436 ~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~ii---e~yf~~  479 (510)
T 3ul1_B          436 GETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI---EKYFSV  479 (510)
T ss_dssp             TCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHH---HHHCC-
T ss_pred             cchHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHH---HHHCCC
Confidence            2111 100 00011234556677889999999888776   466654

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=97.62  E-value=0.0035  Score=65.72  Aligned_cols=182  Identities=16%  Similarity=0.136  Sum_probs=117.7

Q ss_pred             HHHHHhhcC-CCCHHHHHHHHHHHHHHHhHcHHHHHHh-hhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhh
Q 020587           84 VKTLVAGLD-SKDWVVVCEALNNVRRLSIFHKEAMLDI-LGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDL  161 (324)
Q Consensus        84 L~~~l~~L~-s~dW~~r~eaL~~LRrLa~~h~~~l~~~-L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~  161 (324)
                      +..++..|. ++|+..+..|+..|+.|+.. ++..... -..+++.++..+++....|.+.|+.++..|+..........
T Consensus       194 i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~-~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v  272 (780)
T 2z6g_A          194 VSAIVRTMQNTNDVETARCTSGTLHNLSHH-REGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAV  272 (780)
T ss_dssp             HHHHHHHHHHCCCHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHH
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-chhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHH
Confidence            344445554 34899999999999998764 2221111 12578889999999999999999999999988754333222


Q ss_pred             H-HHHHHHHHHHhcCChHHHHHHHHHHHHHHHh-------------------------------------------hcCh
Q 020587          162 L-DPLLVQLLLKSSQDKRFVCEAAEKALVAMTT-------------------------------------------WVSP  197 (324)
Q Consensus       162 ~-d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~-------------------------------------------~vs~  197 (324)
                      . ..+++.|+..+.+.+.-+++.+..+|..+..                                           +-..
T Consensus       273 ~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~  352 (780)
T 2z6g_A          273 RLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSN  352 (780)
T ss_dssp             HHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTH
T ss_pred             HHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHH
Confidence            2 2355555555554444444444334332221                                           1000


Q ss_pred             ------hhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 020587          198 ------ILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQ  270 (324)
Q Consensus       198 ------~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~  270 (324)
                            ...++.|...+++.++.++..++..|..+......    ..+...+++.+..++.+.++++|..|-.++..|.
T Consensus       353 ~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~----~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~  427 (780)
T 2z6g_A          353 KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK----QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLT  427 (780)
T ss_dssp             HHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTT----CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchh----hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence                  11345666777777888888888887777654322    1134678889999999999999999888877653

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=97.59  E-value=0.0056  Score=56.08  Aligned_cols=180  Identities=9%  Similarity=0.002  Sum_probs=146.1

Q ss_pred             HHHHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHH-HhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHh
Q 020587           82 TSVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAML-DILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMID  160 (324)
Q Consensus        82 ~~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~-~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~  160 (324)
                      ..+..+++.|.++|=..+..+|..|..+.+.-|+.+. ..+.++.+.++...++-.=.|+-.|+.|+..|.....-+ ..
T Consensus        33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~-~~  111 (265)
T 3b2a_A           33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMG-SK  111 (265)
T ss_dssp             HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBC-HH
T ss_pred             hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCC-HH
Confidence            3677888888999999999999999999988766654 467888888999999999999999999999987764322 23


Q ss_pred             hHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcCh-hhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhcc
Q 020587          161 LLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSP-ILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYG  239 (324)
Q Consensus       161 ~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~-~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~  239 (324)
                      .++.+..+|..-....+..++++|...|..+ .-.++ .+++..|.+-+++||++++.....++..+..+-+...+.   
T Consensus       112 ~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl-kv~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i~---  187 (265)
T 3b2a_A          112 TFLKAAKTLVSLLESPDDMMRIETIDVLSKL-QPLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHL---  187 (265)
T ss_dssp             HHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC-CBSCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCCG---
T ss_pred             HHHHHHHHHHHHhcCCCchHHHHHHHHhCcC-CcccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHHH---
Confidence            4666777777777788999999999999998 44554 447778888889999999999999999998887766554   


Q ss_pred             HHHHHHHHHHhccCCCHHHHHHHHHHHH
Q 020587          240 IDKLIQVAASQLSDQLPESREAARTLLL  267 (324)
Q Consensus       240 ~~~ll~~l~~~L~D~~pEvR~~AR~~l~  267 (324)
                       +.++.-+..+|+--+|++++.|--++.
T Consensus       188 -~~I~~eI~elL~~eD~~l~e~aLd~Le  214 (265)
T 3b2a_A          188 -TLILDEIPSLLQNDNEFIVELALDVLE  214 (265)
T ss_dssp             -GGTTTTHHHHHTCSCHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence             457777888888889999998876653

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=97.57  E-value=0.0063  Score=61.71  Aligned_cols=185  Identities=16%  Similarity=0.128  Sum_probs=119.0

Q ss_pred             HHHHHHHhhcCCC-CHHHHHHHHHHHHHHHhHcHHHHHHh-hhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHH
Q 020587           82 TSVKTLVAGLDSK-DWVVVCEALNNVRRLSIFHKEAMLDI-LGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMI  159 (324)
Q Consensus        82 ~~L~~~l~~L~s~-dW~~r~eaL~~LRrLa~~h~~~l~~~-L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~  159 (324)
                      ..+..++..|.+. +...+..|+..|+.|+.. ++..... -...++.++..+++....|...|+.++..|+........
T Consensus        56 ~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~  134 (644)
T 2z6h_A           56 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHH-REGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKM  134 (644)
T ss_dssp             HHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS-HHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHH
T ss_pred             ChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-hhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHH
Confidence            3456677777654 788899999999988764 3322111 125788899999999999999999999999877432222


Q ss_pred             hhH-HHHHHHHHHHhcCChHHHHHHHHHHHHHHHhh-----------------------cC-------------------
Q 020587          160 DLL-DPLLVQLLLKSSQDKRFVCEAAEKALVAMTTW-----------------------VS-------------------  196 (324)
Q Consensus       160 ~~~-d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~-----------------------vs-------------------  196 (324)
                      ... ...++.|+..+.+.+.-++..+..+|..+...                       .+                   
T Consensus       135 ~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~  214 (644)
T 2z6h_A          135 AVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS  214 (644)
T ss_dssp             HHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCT
T ss_pred             HHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCc
Confidence            222 23455555444443333333333333322211                       00                   


Q ss_pred             h-------hhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 020587          197 P-------ILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLEL  269 (324)
Q Consensus       197 ~-------~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L  269 (324)
                      .       ...++.|...+++.++.+|..++..|..+......    ......+++.+.+++.+.++++|..|-.++..|
T Consensus       215 ~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~----~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L  290 (644)
T 2z6h_A          215 SNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK----QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNL  290 (644)
T ss_dssp             THHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTT----CCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchh----hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            0       11355666677777888888888888887654211    123457889999999999999999998888766


Q ss_pred             HH
Q 020587          270 QS  271 (324)
Q Consensus       270 ~~  271 (324)
                      ..
T Consensus       291 ~~  292 (644)
T 2z6h_A          291 TC  292 (644)
T ss_dssp             HT
T ss_pred             Hc
Confidence            43

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=97.45  E-value=0.0051  Score=59.59  Aligned_cols=142  Identities=17%  Similarity=0.120  Sum_probs=104.0

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhh--hhHHHHHHHHccC-cchHHHHHHHHHHHHHHHHhh--hh
Q 020587           83 SVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDIL--GDVIPLVVKSLKN-PRSAVCKTAIMTAADIFSAYN--DR  157 (324)
Q Consensus        83 ~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L--~~iv~~l~~~vks-LRS~Vsk~A~~tl~dLf~~L~--~~  157 (324)
                      .+..+...|.++|...+..|+..|..|+.+.+.. ...+  ...++.++..+.+ ....+.+.|+.++..|...-.  ..
T Consensus        18 ~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~-~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~~   96 (529)
T 1jdh_A           18 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASR-HAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLA   96 (529)
T ss_dssp             HHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHH-HHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred             hHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccH-HHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHHH
Confidence            4677888888999999999999999998754421 1112  2466667776653 366788999999888765421  11


Q ss_pred             HHhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcCh-------hhhHHHHhhhccCCCHHHHHHHHHHHHhhc
Q 020587          158 MIDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSP-------ILLLPKLQPYLKNRNPRIRAKASMCFSRSV  227 (324)
Q Consensus       158 m~~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~-------~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v  227 (324)
                      +..  ...++.|+....+...-++..|-.+|..++..-..       ...++.|...+++.++.+|..++..|..+.
T Consensus        97 i~~--~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la  171 (529)
T 1jdh_A           97 IFK--SGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILA  171 (529)
T ss_dssp             HHH--TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHH
T ss_pred             HHH--cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence            111  24788888888887888999999999999877432       346778888899999999998877776544

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=97.39  E-value=0.00047  Score=70.31  Aligned_cols=171  Identities=13%  Similarity=0.107  Sum_probs=115.3

Q ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhh-H
Q 020587           84 VKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDL-L  162 (324)
Q Consensus        84 L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~-~  162 (324)
                      +.++-..+++.|=..+++++..|-.+-....     ........+++.+.+.+-.+=|.+-..+..++..     +++ +
T Consensus        36 ~~~ir~~l~~~~~~~k~~~l~kli~~~~~G~-----d~~~~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~-----~~e~~  105 (618)
T 1w63_A           36 CAAIRSSFREEDNTYRCRNVAKLLYMHMLGY-----PAHFGQLECLKLIASQKFTDKRIGYLGAMLLLDE-----RQDVH  105 (618)
T ss_dssp             HHHHHHHHTTTCTTTHHHHHHHHHHHHHTTC-----CCGGGHHHHHHHHHSSSHHHHHHHHHHHHHHCCC-----CHHHH
T ss_pred             HHHHHHHhhCCCHHHHHHHHHHHHHHHHcCC-----CCcchHHHHHHHHcCCchHHHHHHHHHHHHHhCC-----CcHHH
Confidence            4455556666554557777665555432211     1233445566777777777777666654444322     344 3


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHH
Q 020587          163 DPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDK  242 (324)
Q Consensus       163 d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~  242 (324)
                      -.++..|.+-..+.|.++|..|-++|..|...--...+++.|..+++|.||.||.+++.++.++.... ++ +    .+.
T Consensus       106 ~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~-p~-~----v~~  179 (618)
T 1w63_A          106 LLMTNCIKNDLNHSTQFVQGLALCTLGCMGSSEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKV-PE-L----MEM  179 (618)
T ss_dssp             HHHHHHHHHHHSCSSSHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHC-GG-G----GGG
T ss_pred             HHHHHHHHHhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHC-hH-H----HHH
Confidence            45666777778889999999888888776532112335778889999999999999999999998853 32 2    235


Q ss_pred             HHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 020587          243 LIQVAASQLSDQLPESREAARTLLLELQ  270 (324)
Q Consensus       243 ll~~l~~~L~D~~pEvR~~AR~~l~~L~  270 (324)
                      +++.+..+|+|.++.|+.+|-.++..+.
T Consensus       180 ~~~~l~~lL~D~d~~V~~~Al~~L~~i~  207 (618)
T 1w63_A          180 FLPATKNLLNEKNHGVLHTSVVLLTEMC  207 (618)
T ss_dssp             GGGGTTTSTTCCCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhCCCCHhHHHHHHHHHHHHH
Confidence            6777888999999999999877776553

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=97.32  E-value=0.0078  Score=61.02  Aligned_cols=146  Identities=16%  Similarity=0.069  Sum_probs=107.5

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHH-hhhhHHHHHHHHccCc-chHHHHHHHHHHHHHHHHhhhhHHh
Q 020587           83 SVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLD-ILGDVIPLVVKSLKNP-RSAVCKTAIMTAADIFSAYNDRMID  160 (324)
Q Consensus        83 ~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~-~L~~iv~~l~~~vksL-RS~Vsk~A~~tl~dLf~~L~~~m~~  160 (324)
                      .+..++..|.++|+..+..|+..|..|+.+.+....- ....++..++..+.+- ...+.+.|+.++..|...-.....-
T Consensus        15 ~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i   94 (644)
T 2z6h_A           15 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAI   94 (644)
T ss_dssp             THHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred             hHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHH
Confidence            3667778888999999999999999999866432211 1235677778877754 6778889998888776542211111


Q ss_pred             hHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcCh-------hhhHHHHhhhccCCCHHHHHHHHHHHHhhcc
Q 020587          161 LLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSP-------ILLLPKLQPYLKNRNPRIRAKASMCFSRSVP  228 (324)
Q Consensus       161 ~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~-------~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~  228 (324)
                      .-...++.|+..+.+....++..|-.+|..++..-..       ...++.|...+++.+++++..++.+|..+..
T Consensus        95 ~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~  169 (644)
T 2z6h_A           95 FKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY  169 (644)
T ss_dssp             HTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT
T ss_pred             HHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHh
Confidence            1124788888888888889999999999999877532       2367788899999999999999888877664

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=97.31  E-value=0.0026  Score=61.22  Aligned_cols=182  Identities=9%  Similarity=0.048  Sum_probs=126.5

Q ss_pred             CCCCCHHH--HHHHHHhhcCCC--CHHHHHHHHHHHHHHHhHc---HHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHH
Q 020587           75 IDVEDIDT--SVKTLVAGLDSK--DWVVVCEALNNVRRLSIFH---KEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTA  147 (324)
Q Consensus        75 ~pl~dpe~--~L~~~l~~L~s~--dW~~r~eaL~~LRrLa~~h---~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl  147 (324)
                      .|+.+++.  .+++. ...++.  |=.+..+++..+=.+-...   |+..   ...+-..+++.+.+-+-.+=|-.-..+
T Consensus        17 ~p~~~~~k~~v~qe~-r~fn~~~~~~~kc~~~l~kll~l~~~G~~f~~~e---~t~lf~~v~kl~~s~d~~lKrLvYLyl   92 (355)
T 3tjz_B           17 NPFQHLEKSAVLQEA-RVFNETPINPRKCAHILTKILYLINQGEHLGTTE---ATEAFFAMTKLFQSNDPTLRRMCYLTI   92 (355)
T ss_dssp             ---CCCCHHHHHHHG-GGTTSSSCCHHHHHHHHHHHHHHHHHTCCCCHHH---HHHHHHHHHGGGGCCCHHHHHHHHHHH
T ss_pred             CccccchHHHHHHHH-HHhcCCCCcHHHHHHHHHHHHHHHHCCCCCchhH---HHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence            45644443  66663 445433  5555556777666654322   1111   223445678899999988888777766


Q ss_pred             HHHHHHhhhhHHhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhhhHHHHhhhccCCCHHHHHHHHHHHHhhc
Q 020587          148 ADIFSAYNDRMIDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPILLLPKLQPYLKNRNPRIRAKASMCFSRSV  227 (324)
Q Consensus       148 ~dLf~~L~~~m~~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v  227 (324)
                      ..+...     .+++=.++..|.+=+.+.|.++|--|-++|..+...---..+.+.+..++.|+||-||.+++.+..+++
T Consensus        93 ~~~~~~-----~~e~iLv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~  167 (355)
T 3tjz_B           93 KEMSCI-----AEDVIIVTSSLTKDMTGKEDSYRGPAVRALCQITDSTMLQAIERYMKQAIVDKVPSVSSSALVSSLHLL  167 (355)
T ss_dssp             HHHTTT-----SSCGGGGHHHHHHHHHSSCHHHHHHHHHHHHHHCCTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHT
T ss_pred             HHhCCC-----HHHHHHHHHHHHhhcCCCcHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHh
Confidence            655544     233336777777778999999999988888877655555667778889999999999999999999888


Q ss_pred             ccccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 020587          228 PRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQS  271 (324)
Q Consensus       228 ~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~  271 (324)
                      ... ++ +    .+.+++.+..++.|.+|-|-.+|-.++..+.+
T Consensus       168 ~~~-pe-~----v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~  205 (355)
T 3tjz_B          168 KCS-FD-V----VKRWVNEAQEAASSDNIMVQYHALGLLYHVRK  205 (355)
T ss_dssp             TTC-HH-H----HHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHT
T ss_pred             ccC-HH-H----HHHHHHHHHHHhcCCCccHHHHHHHHHHHHHh
Confidence            753 22 2    34578888889999999999988887776654

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=97.22  E-value=0.0061  Score=63.83  Aligned_cols=180  Identities=11%  Similarity=0.024  Sum_probs=118.6

Q ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHH-hhH
Q 020587           84 VKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMI-DLL  162 (324)
Q Consensus        84 L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~-~~~  162 (324)
                      +..++..|.+.+...+..++..++.+.   ...+.   ...++.++..+++-...|-..|+.+++.|...-..... ...
T Consensus       117 i~~lv~~L~~~~~~~r~~a~~~l~~~~---~~~i~---~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~  190 (780)
T 2z6g_A          117 HPTNVQRLAEPSQMLKHAVVNLINYQD---DAELA---TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRS  190 (780)
T ss_dssp             ---------CCSCHHHHHHHHHHHHHH---HHHHH---HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTC
T ss_pred             HHHHHHHhcCccHHHHHHHHHHHHhhh---HHHHH---hCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhc
Confidence            467888888888888888888877552   12221   44566666777777889999999999999875432211 113


Q ss_pred             HHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHhhcC------hhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccch
Q 020587          163 DPLLVQLLLKSSQD-KRFVCEAAEKALVAMTTWVS------PILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGI  235 (324)
Q Consensus       163 d~ll~~LL~Ka~~s-k~FI~e~A~~AL~amv~~vs------~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i  235 (324)
                      ..+++.|+..+... +..++..|..+|..+...-.      ....++.|...+++.++.+|..++..|..+....... .
T Consensus       191 ~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~-~  269 (780)
T 2z6g_A          191 PQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGA-K  269 (780)
T ss_dssp             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTH-H
T ss_pred             cChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhh-H
Confidence            46778877776533 67889999999988654321      1246778888899999999999999999988753221 1


Q ss_pred             hhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 020587          236 KEYGIDKLIQVAASQLSDQLPESREAARTLLLELQ  270 (324)
Q Consensus       236 ~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~  270 (324)
                      ........++.+..++.+.++++|..+-.++..|.
T Consensus       270 ~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La  304 (780)
T 2z6g_A          270 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILA  304 (780)
T ss_dssp             HHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence            10111346777888888999999998877776554

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=97.20  E-value=0.0072  Score=64.07  Aligned_cols=189  Identities=14%  Similarity=0.112  Sum_probs=132.7

Q ss_pred             HHHHHhhcCCC-CHHHHHHHHHHHHHHHhHcHHHHHHhhh-hHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhh
Q 020587           84 VKTLVAGLDSK-DWVVVCEALNNVRRLSIFHKEAMLDILG-DVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDL  161 (324)
Q Consensus        84 L~~~l~~L~s~-dW~~r~eaL~~LRrLa~~h~~~l~~~L~-~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~  161 (324)
                      +..++..|.++ +=..+++|+.-|+.|+.+.++.-...+. ..++.+...+.+-...|-+.|+.+++.|+..- .....+
T Consensus       582 IppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~-~~~~~~  660 (810)
T 3now_A          582 IRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSE-DVIKMF  660 (810)
T ss_dssp             HHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSH-HHHHHH
T ss_pred             HHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCh-HHHHHH
Confidence            45566666654 3345678999999998765443322222 35677777777888889999999999998632 223334


Q ss_pred             HH--HHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcC-------h-hhhHHHHhhhccCCCHHHHHHHHHHHHhhccccc
Q 020587          162 LD--PLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVS-------P-ILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLG  231 (324)
Q Consensus       162 ~d--~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs-------~-~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g  231 (324)
                      ++  ..++.|+..+...+.-++.+|..||..+.....       . ...++.|...+.+.+..+|..++..|.+++.. +
T Consensus       661 v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~-s  739 (810)
T 3now_A          661 EGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINA-G  739 (810)
T ss_dssp             HSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTT-C
T ss_pred             HhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhC-C
Confidence            42  478888888888888899999999988876311       1 34667788889999999999999999998872 2


Q ss_pred             ccchhhccHHHHHHHHHHhccCC---CHHHHHHHHHHHHHHHHHhh
Q 020587          232 VEGIKEYGIDKLIQVAASQLSDQ---LPESREAARTLLLELQSVYE  274 (324)
Q Consensus       232 ~~~i~~~~~~~ll~~l~~~L~D~---~pEvR~~AR~~l~~L~~~~~  274 (324)
                      .+......-.-.++.+..++.+.   ++++++.|.+++..+.....
T Consensus       740 ~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~g~  785 (810)
T 3now_A          740 EEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERYRI  785 (810)
T ss_dssp             HHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhCCC
Confidence            22111111223566677777554   89999999999987775543

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=97.01  E-value=0.03  Score=53.46  Aligned_cols=187  Identities=13%  Similarity=0.060  Sum_probs=124.8

Q ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHHHHhH-cHHHHHHh-hhhHHHHHHHH-ccCcchHHHHHHHHHHHHHHHHh---hhh
Q 020587           84 VKTLVAGLDSKDWVVVCEALNNVRRLSIF-HKEAMLDI-LGDVIPLVVKS-LKNPRSAVCKTAIMTAADIFSAY---NDR  157 (324)
Q Consensus        84 L~~~l~~L~s~dW~~r~eaL~~LRrLa~~-h~~~l~~~-L~~iv~~l~~~-vksLRS~Vsk~A~~tl~dLf~~L---~~~  157 (324)
                      +..++..|++.+=+.+..|...|+.|+.. .++.-... -...++.++.. .++....+.+.|+.++..|....   +..
T Consensus       129 Ip~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~  208 (354)
T 3nmw_A          129 MRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKAD  208 (354)
T ss_dssp             HHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHH
Confidence            56677778888888888899999999764 23211111 12355666665 45566788889999998887632   222


Q ss_pred             HHhhHHHHHHHHHHHhcCChH----HHHHHHHHHHHHHHhh--cCh-h-------hhHHHHhhhccCCCHHHHHHHHHHH
Q 020587          158 MIDLLDPLLVQLLLKSSQDKR----FVCEAAEKALVAMTTW--VSP-I-------LLLPKLQPYLKNRNPRIRAKASMCF  223 (324)
Q Consensus       158 m~~~~d~ll~~LL~Ka~~sk~----FI~e~A~~AL~amv~~--vs~-~-------~ll~~L~~~~~hKNp~VR~~aa~~L  223 (324)
                      +.. ....++.|.......+.    -+.+.|..+|..+..+  .++ .       -.++.|...+++.+..++..++..|
T Consensus       209 i~~-~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL  287 (354)
T 3nmw_A          209 ICA-VDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTL  287 (354)
T ss_dssp             HHH-STTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred             HHH-hcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHH
Confidence            211 23467777766654322    4778888888887763  122 1       2567778888899999999999999


Q ss_pred             HhhcccccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Q 020587          224 SRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSV  272 (324)
Q Consensus       224 ~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~  272 (324)
                      .++...- .+........-.++.+..++..+++++|+.|-.++..|...
T Consensus       288 ~nLa~~~-~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~  335 (354)
T 3nmw_A          288 WNLSARN-PKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN  335 (354)
T ss_dssp             HHHTSSC-HHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTT
T ss_pred             HHHhCCC-HHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence            9987531 11111111234577888899999999999999888877654

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=97.01  E-value=0.055  Score=48.16  Aligned_cols=171  Identities=18%  Similarity=0.226  Sum_probs=119.8

Q ss_pred             HHHHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhh--hhHH
Q 020587           82 TSVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYN--DRMI  159 (324)
Q Consensus        82 ~~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~--~~m~  159 (324)
                      ..+++++..|++.-|..+-.||.-+..++...|+...+.+.+++.-+-+.          +|+-.-+++.+.+|  -...
T Consensus        32 ~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~ks----------EaIpltqeIa~a~G~la~i~  101 (253)
T 2db0_A           32 SVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKKS----------EAIPLTQEIAKAFGQMAKEK  101 (253)
T ss_dssp             HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHC----------CSHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhc----------ccCchHHHHHHHHhHHHHhC
Confidence            45788889999999999999999999999888998888888776655553          46666678888877  3334


Q ss_pred             hh-HHHHHHHHHHH--hcCChHHHHHHHHHHHHHHHhhcCh--hhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccc
Q 020587          160 DL-LDPLLVQLLLK--SSQDKRFVCEAAEKALVAMTTWVSP--ILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEG  234 (324)
Q Consensus       160 ~~-~d~ll~~LL~K--a~~sk~FI~e~A~~AL~amv~~vs~--~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~  234 (324)
                      |+ ++.++|.|+.-  +|+.  -++---.-+|..|...-+.  .-+...|..-+.+||-.=|..+.-|+..    +|..+
T Consensus       102 Pe~v~~vVp~lfanyrigd~--kikIn~~yaLeeIaranP~l~~~v~rdi~smltskd~~Dkl~aLnFi~a----lGen~  175 (253)
T 2db0_A          102 PELVKSMIPVLFANYRIGDE--KTKINVSYALEEIAKANPMLMASIVRDFMSMLSSKNREDKLTALNFIEA----MGENS  175 (253)
T ss_dssp             HHHHHHHHHHHHHHSCCCSH--HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHT----CCTTT
T ss_pred             HHHHHhhHHHHHHHHhcCCc--cceecHHHHHHHHHHhChHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH----HhccC
Confidence            44 68889998865  4543  3444555667766554322  2244457777789997777666666543    44443


Q ss_pred             hhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 020587          235 IKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQ  270 (324)
Q Consensus       235 i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~  270 (324)
                      .. + ..-+++-+..+|.|.+.-||..|-.++..+-
T Consensus       176 ~~-y-v~PfLprL~aLL~D~deiVRaSaVEtL~~lA  209 (253)
T 2db0_A          176 FK-Y-VNPFLPRIINLLHDGDEIVRASAVEALVHLA  209 (253)
T ss_dssp             HH-H-HGGGHHHHHGGGGCSSHHHHHHHHHHHHHHH
T ss_pred             cc-c-cCcchHHHHHHHcCcchhhhHHHHHHHHHHH
Confidence            22 2 3445666778999999999999988887554

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=96.87  E-value=0.011  Score=60.55  Aligned_cols=164  Identities=10%  Similarity=0.032  Sum_probs=110.4

Q ss_pred             CHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHHHHhc
Q 020587           95 DWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLLKSS  174 (324)
Q Consensus        95 dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d~ll~~LL~Ka~  174 (324)
                      |=.++.+++..+=.+-.     +..........+++.+.+.+-.+=|.+-..+..++..-    .+.+-.++..+.+-..
T Consensus        51 ~~~~k~~~l~Kli~l~~-----~G~d~s~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~----~e~~~L~iN~l~kDl~  121 (621)
T 2vgl_A           51 DGYSKKKYVCKLLFIFL-----LGHDIDFGHMEAVNLLSSNRYTEKQIGYLFISVLVNSN----SELIRLINNAIKNDLA  121 (621)
T ss_dssp             CHHHHHHHHHHHHHHHH-----HSCCCCSCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCC----HHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHH-----cCCCCchhHHHHHHHhcCCCHHHHHHHHHHHHHHccCC----cHHHHHHHHHHHHhcC
Confidence            44455566655443322     11123344566788888888888777776666665321    1224455666666688


Q ss_pred             CChHHHHHHHHHHHHHHHhhcChhhhHHHHhhhc--cCCCHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhcc
Q 020587          175 QDKRFVCEAAEKALVAMTTWVSPILLLPKLQPYL--KNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLS  252 (324)
Q Consensus       175 ~sk~FI~e~A~~AL~amv~~vs~~~ll~~L~~~~--~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~  252 (324)
                      +.|.+++..|-++|..+...--...+++.+..++  .|.+|.||.+++.++.++.+. .++.+..   +.+.+.+.++|+
T Consensus       122 ~~n~~ir~lALr~L~~i~~~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~-~p~~~~~---~~~~~~l~~lL~  197 (621)
T 2vgl_A          122 SRNPTFMGLALHCIANVGSREMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRT-SPDLVPM---GDWTSRVVHLLN  197 (621)
T ss_dssp             SCCHHHHHHHHHHHHHHCCHHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHH-CGGGCCC---CSCHHHHHHHTT
T ss_pred             CCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHh-ChhhcCc---hhHHHHHHHHhC
Confidence            8899999888777776633221233566777888  899999999999999999984 4443321   256777788999


Q ss_pred             CCCHHHHHHHHHHHHHHHH
Q 020587          253 DQLPESREAARTLLLELQS  271 (324)
Q Consensus       253 D~~pEvR~~AR~~l~~L~~  271 (324)
                      |.+|.|+.+|-.++..+..
T Consensus       198 d~d~~V~~~a~~~l~~i~~  216 (621)
T 2vgl_A          198 DQHLGVVTAATSLITTLAQ  216 (621)
T ss_dssp             CSCHHHHHHHHHHHHHHHH
T ss_pred             CCCccHHHHHHHHHHHHHH
Confidence            9999999999888776544

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=96.84  E-value=0.03  Score=59.30  Aligned_cols=187  Identities=16%  Similarity=0.059  Sum_probs=131.9

Q ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhh-hhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHH---
Q 020587           84 VKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDIL-GDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMI---  159 (324)
Q Consensus        84 L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L-~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~---  159 (324)
                      +..+...|++.+=..+.+|...|..|+. +++.-...+ ...++.++..+++--..+-++|+.+++.|...-.+...   
T Consensus       497 Vp~LV~LL~s~s~~vqe~Aa~aL~NLA~-d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~  575 (810)
T 3now_A          497 TTALCALAKTESHNSQELIARVLNAVCG-LKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSG  575 (810)
T ss_dssp             HHHHHHHHTCCCHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTT
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcc
Confidence            4566677788887889999999999985 444222212 34677888888887778889999999999876543321   


Q ss_pred             hhHHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHhhcCh-------hhhHHHHhhhccCCCHHHHHHHHHHHHhhccccc
Q 020587          160 DLLDPLLVQLLLKSSQD-KRFVCEAAEKALVAMTTWVSP-------ILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLG  231 (324)
Q Consensus       160 ~~~d~ll~~LL~Ka~~s-k~FI~e~A~~AL~amv~~vs~-------~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g  231 (324)
                      ......+++|+.....+ +.....+|-.||..+..+-..       ...++.|...+.|.|+.||+.++.+|.+++..  
T Consensus       576 ~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~--  653 (810)
T 3now_A          576 QRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMS--  653 (810)
T ss_dssp             HHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTS--
T ss_pred             hhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC--
Confidence            12234788888877643 445556777777766654211       12566778888899999999999999998873  


Q ss_pred             ccchhhcc-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Q 020587          232 VEGIKEYG-IDKLIQVAASQLSDQLPESREAARTLLLELQSVY  273 (324)
Q Consensus       232 ~~~i~~~~-~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~  273 (324)
                      .+....+. -...++.+.+++...+.++|..|=.++..|....
T Consensus       654 ~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s  696 (810)
T 3now_A          654 EDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVS  696 (810)
T ss_dssp             HHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHC
T ss_pred             hHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCC
Confidence            33222221 0236778888999999999999999998887643

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=96.80  E-value=0.05  Score=57.81  Aligned_cols=173  Identities=11%  Similarity=0.064  Sum_probs=105.8

Q ss_pred             CHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHcc---CcchHHHHHHHHHHHHHHHHhh
Q 020587           79 DIDTSVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLK---NPRSAVCKTAIMTAADIFSAYN  155 (324)
Q Consensus        79 dpe~~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vk---sLRS~Vsk~A~~tl~dLf~~L~  155 (324)
                      ||+.-+..-++  ++..|..|.-|.+.|..|+.+.++.+.+.+-..+...+....   +..=..-..|+.+++-++....
T Consensus       360 dp~e~i~~d~e--~~d~~s~R~aa~~~L~~l~~~~~~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~  437 (960)
T 1wa5_C          360 DPIEYIRRDLE--GSDTDTRRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGN  437 (960)
T ss_dssp             CHHHHHHHHHH--C----CHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSC
T ss_pred             CHHHHHHhccC--cccccCcHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhc
Confidence            56554443333  345678899999999999988776554433333333332111   1222344567888888865421


Q ss_pred             -------h-----hHHhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhh---hHHHHhhhccCCCHHHHHHHH
Q 020587          156 -------D-----RMIDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPIL---LLPKLQPYLKNRNPRIRAKAS  220 (324)
Q Consensus       156 -------~-----~m~~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~---ll~~L~~~~~hKNp~VR~~aa  220 (324)
                             .     .+.+++...+.+.|.--.....+||..|-.++..+....++..   +++.|..++.+.++.||..++
T Consensus       438 ~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~~~l~~~l~~l~~~L~d~~~~V~~~A~  517 (960)
T 1wa5_C          438 ITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQLIELMPILATFLQTDEYVVYTYAA  517 (960)
T ss_dssp             CBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred             cccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCChhHHHHHH
Confidence                   1     4445443322222221111288999999999999998886543   555677888889999999999


Q ss_pred             HHHHhhccccc----------ccchhhccHHHHHHHHHHhccCC
Q 020587          221 MCFSRSVPRLG----------VEGIKEYGIDKLIQVAASQLSDQ  254 (324)
Q Consensus       221 ~~L~~~v~~~g----------~~~i~~~~~~~ll~~l~~~L~D~  254 (324)
                      ..|..+++...          ...+..+ .+.+++.+..+++..
T Consensus       518 ~Al~~~~~~~~~~~~~~~~~~~~~l~p~-l~~ll~~L~~ll~~~  560 (960)
T 1wa5_C          518 ITIEKILTIRESNTSPAFIFHKEDISNS-TEILLKNLIALILKH  560 (960)
T ss_dssp             HHHHHHTTCBSCSSSCCBSSCGGGTTTT-HHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhcccccccccccccHHHhhhh-HHHHHHHHHHHHHhc
Confidence            99999887532          1223333 677777777777664

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=96.79  E-value=0.074  Score=52.62  Aligned_cols=187  Identities=13%  Similarity=0.076  Sum_probs=122.0

Q ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHHHHhH-cHHHHHHh-hhhHHHHHHHH-ccCcchHHHHHHHHHHHHHHHHhhhhHHh
Q 020587           84 VKTLVAGLDSKDWVVVCEALNNVRRLSIF-HKEAMLDI-LGDVIPLVVKS-LKNPRSAVCKTAIMTAADIFSAYNDRMID  160 (324)
Q Consensus        84 L~~~l~~L~s~dW~~r~eaL~~LRrLa~~-h~~~l~~~-L~~iv~~l~~~-vksLRS~Vsk~A~~tl~dLf~~L~~~m~~  160 (324)
                      +..++..|.+.+=+.+..|...|+.|+.. .++.-... -...++.++.. +++....+.+.|+.++..|.......-..
T Consensus       245 Ip~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~  324 (458)
T 3nmz_A          245 MRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKAD  324 (458)
T ss_dssp             HHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHH
Confidence            55666677777777778888888888763 22211111 12356667775 45566788999999999998743211111


Q ss_pred             hH--HHHHHHHHHHhcCChH----HHHHHHHHHHHHHHhh--cCh--------hhhHHHHhhhccCCCHHHHHHHHHHHH
Q 020587          161 LL--DPLLVQLLLKSSQDKR----FVCEAAEKALVAMTTW--VSP--------ILLLPKLQPYLKNRNPRIRAKASMCFS  224 (324)
Q Consensus       161 ~~--d~ll~~LL~Ka~~sk~----FI~e~A~~AL~amv~~--vs~--------~~ll~~L~~~~~hKNp~VR~~aa~~L~  224 (324)
                      ..  ...++.|.......+.    -+.+.|..+|..+..+  .++        .-.++.|...+++.+..++..++..|.
T Consensus       325 I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~  404 (458)
T 3nmz_A          325 ICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLW  404 (458)
T ss_dssp             HHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHH
T ss_pred             HHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHH
Confidence            11  3467777766654322    4788888898887763  222        124667778888999999999999999


Q ss_pred             hhcccccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 020587          225 RSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQS  271 (324)
Q Consensus       225 ~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~  271 (324)
                      ++... ..+......-.-.++.+..++..+++++|+.|-.++..|..
T Consensus       405 nLa~~-~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~  450 (458)
T 3nmz_A          405 NLSAR-NPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMA  450 (458)
T ss_dssp             HHHSS-CHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHT
T ss_pred             HHHcC-CHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHc
Confidence            88743 12211111233467788889999999999999888876543

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=96.62  E-value=0.18  Score=46.22  Aligned_cols=184  Identities=14%  Similarity=0.079  Sum_probs=130.9

Q ss_pred             HHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHh
Q 020587           81 DTSVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMID  160 (324)
Q Consensus        81 e~~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~  160 (324)
                      +..+..++..+.++|=.-.+.|+.-+++|....|- =...+..++.++...+++.+--+.-.|.-.++-|      ....
T Consensus        74 e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL-~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl------kv~~  146 (265)
T 3b2a_A           74 ERHLDVFINALSQENEKVTIKALRALGYLVKDVPM-GSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKL------QPLE  146 (265)
T ss_dssp             HHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCB-CHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC------CBSC
T ss_pred             HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcC------Cccc
Confidence            34566777778888888899999999998775420 1134666777788888888877776666444444      2222


Q ss_pred             hHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhh----hHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchh
Q 020587          161 LLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPIL----LLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIK  236 (324)
Q Consensus       161 ~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~----ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~  236 (324)
                      ....++..++.-....+.-+..+|-++|..|..+.....    ++.-+...++|.+|.++..+...+..++.+-=.+.+.
T Consensus       147 ~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~  226 (265)
T 3b2a_A          147 DSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHLTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVK  226 (265)
T ss_dssp             CCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCH
T ss_pred             chHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHH
Confidence            233344444444466689999999999999988876443    4455778889999999999999999888863222222


Q ss_pred             hccHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHHHHH
Q 020587          237 EYGIDKLIQVAASQL-SDQLPESREAARTLLLELQSV  272 (324)
Q Consensus       237 ~~~~~~ll~~l~~~L-~D~~pEvR~~AR~~l~~L~~~  272 (324)
                      . ++.++...+..+. --+.|+.|.-||...-.+...
T Consensus       227 ~-~~~~~~~~v~~l~~~~~~~~~~~ka~~v~~~le~~  262 (265)
T 3b2a_A          227 I-ELLKISRIVDGLVYREGAPIIRLKAKKVSDLIDSV  262 (265)
T ss_dssp             H-HHHHHHHHHHHGGGCSSCHHHHHHHHHHHHHHHHH
T ss_pred             H-HHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHh
Confidence            1 4777888888888 899999999999987666543

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=96.57  E-value=0.006  Score=49.02  Aligned_cols=115  Identities=12%  Similarity=0.045  Sum_probs=78.0

Q ss_pred             HHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhhhHHHHh
Q 020587          126 PLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPILLLPKLQ  205 (324)
Q Consensus       126 ~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~ll~~L~  205 (324)
                      ..+...+++....|-..|+.+++.+    +.   +.    ++.|+..+.+.+..||..|-.+|..+    .....++.|.
T Consensus        15 ~~l~~~L~~~~~~vR~~A~~~L~~~----~~---~~----~~~L~~~L~d~~~~vR~~A~~aL~~~----~~~~a~~~L~   79 (131)
T 1te4_A           15 VPRGSHMADENKWVRRDVSTALSRM----GD---EA----FEPLLESLSNEDWRIRGAAAWIIGNF----QDERAVEPLI   79 (131)
T ss_dssp             ------CCSSCCCSSSSCCSSTTSC----SS---TT----HHHHHHGGGCSCHHHHHHHHHHHGGG----CSHHHHHHHH
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHh----Cc---hH----HHHHHHHHcCCCHHHHHHHHHHHHhc----CCHHHHHHHH
Confidence            3344555555555555555444433    11   11    36666777788899999988887664    3456788888


Q ss_pred             hhccCCCHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHH
Q 020587          206 PYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLL  267 (324)
Q Consensus       206 ~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~  267 (324)
                      ..+++.++.||..++..|..+-    .        +..++.+..++.|.++.+|..|..++.
T Consensus        80 ~~L~d~~~~VR~~A~~aL~~~~----~--------~~a~~~L~~~l~d~~~~vr~~A~~aL~  129 (131)
T 1te4_A           80 KLLEDDSGFVRSGAARSLEQIG----G--------ERVRAAMEKLAETGTGFARKVAVNYLE  129 (131)
T ss_dssp             HHHHHCCTHHHHHHHHHHHHHC----S--------HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             HHHcCCCHHHHHHHHHHHHHhC----c--------HHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence            8889999999999998887542    1        345677778889999999999988764

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=96.57  E-value=0.015  Score=56.79  Aligned_cols=182  Identities=14%  Similarity=0.061  Sum_probs=116.5

Q ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHH-HHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhH
Q 020587           84 VKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAM-LDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLL  162 (324)
Q Consensus        84 L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l-~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~  162 (324)
                      +..++..|++.|+..++.|...|+.|+.+++..- .-.-...++.++..+++....+.+.|+.++..|... .+.....+
T Consensus         4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~-~~~~k~~i   82 (457)
T 1xm9_A            4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFR-STTNKLET   82 (457)
T ss_dssp             HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSS-CHHHHHHH
T ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcC-CHHHHHHH
Confidence            5577888889999999999999999987654211 111345688899999999999999999999999863 11111111


Q ss_pred             --HHHHHHHHHHhc-CChHHHHHHHHHHHHHHHhhcChhh------hHHHHhhhc--------cC--------CCHHHHH
Q 020587          163 --DPLLVQLLLKSS-QDKRFVCEAAEKALVAMTTWVSPIL------LLPKLQPYL--------KN--------RNPRIRA  217 (324)
Q Consensus       163 --d~ll~~LL~Ka~-~sk~FI~e~A~~AL~amv~~vs~~~------ll~~L~~~~--------~h--------KNp~VR~  217 (324)
                        ...++.|+.... ..+.-+++.|..||..+..+ ...+      .+|.|...+        ++        ..+.+.+
T Consensus        83 ~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~  161 (457)
T 1xm9_A           83 RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFF  161 (457)
T ss_dssp             HHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHH
T ss_pred             HHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHHH
Confidence              134677777766 55678899999999888876 3222      344444444        11        3456777


Q ss_pred             HHHHHHHhhccccccc---chhh--ccHHHHHHHHHHhccC--CCHHHHHHHHHHHHHH
Q 020587          218 KASMCFSRSVPRLGVE---GIKE--YGIDKLIQVAASQLSD--QLPESREAARTLLLEL  269 (324)
Q Consensus       218 ~aa~~L~~~v~~~g~~---~i~~--~~~~~ll~~l~~~L~D--~~pEvR~~AR~~l~~L  269 (324)
                      .++..|.++...  ++   .+..  ..++.|++.+.....+  .+..+.+.+-.+++.|
T Consensus       162 ~a~~aL~nLs~~--~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nL  218 (457)
T 1xm9_A          162 NATGCLRNLSSA--DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNL  218 (457)
T ss_dssp             HHHHHHHHHTTS--HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHccC--HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhc
Confidence            888888888764  22   1222  2355565555544322  3445566665555444

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=96.48  E-value=0.071  Score=54.13  Aligned_cols=99  Identities=9%  Similarity=0.020  Sum_probs=71.5

Q ss_pred             HHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhhhHHHHhhhc
Q 020587          129 VKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPILLLPKLQPYL  208 (324)
Q Consensus       129 ~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~ll~~L~~~~  208 (324)
                      ...+.+-...|-..|+.+++.+...-...+.++.+    .++....+....|+..|-..|..|+...+-..++..|..++
T Consensus       319 ~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~~~~~~----~i~~~l~d~d~~Ir~~alelL~~l~~~~nv~~iv~eL~~~l  394 (618)
T 1w63_A          319 GRFLLNNDKNIRYVALTSLLKTVQTDHNAVQRHRS----TIVDCLKDLDVSIKRRAMELSFALVNGNNIRGMMKELLYFL  394 (618)
T ss_dssp             HHHHTCSSTTTHHHHHHHHHHHHHHHHHHHGGGHH----HHHHGGGSSCHHHHHHHHHHHHHHCCSSSTHHHHHHHHHHH
T ss_pred             HHHHhCCCCchHHHHHHHHHHHHhhCHHHHHHHHH----HHHHHccCCChhHHHHHHHHHHHHcccccHHHHHHHHHHHH
Confidence            33344444555555666666665554444444444    34444567788899999999999888877788899999999


Q ss_pred             cCCCHHHHHHHHHHHHhhccccc
Q 020587          209 KNRNPRIRAKASMCFSRSVPRLG  231 (324)
Q Consensus       209 ~hKNp~VR~~aa~~L~~~v~~~g  231 (324)
                      .+.+..+|..+...+..|..+..
T Consensus       395 ~~~d~e~r~~~v~~I~~la~k~~  417 (618)
T 1w63_A          395 DSCEPEFKADCASGIFLAAEKYA  417 (618)
T ss_dssp             HHCCHHHHHHHHHHHHHHHHSSC
T ss_pred             HhCCHHHHHHHHHHHHHHHHHhC
Confidence            99999999999999999988764

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=96.47  E-value=0.09  Score=47.52  Aligned_cols=138  Identities=11%  Similarity=0.106  Sum_probs=95.7

Q ss_pred             cCCCCHHHHHHHHHHHHHHHhHc------HHHHHHhhhhHHHHHH-HHccCcchHHHHHHHHHHHHHHHHhhhhHHhhHH
Q 020587           91 LDSKDWVVVCEALNNVRRLSIFH------KEAMLDILGDVIPLVV-KSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLD  163 (324)
Q Consensus        91 L~s~dW~~r~eaL~~LRrLa~~h------~~~l~~~L~~iv~~l~-~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d  163 (324)
                      +.+.+=.-...||+.+..++...      ..........+++.++ +.+.+.|..+...|+.++.+++....     ..+
T Consensus        64 l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~-----~~~  138 (278)
T 4ffb_C           64 ITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDT-----SIT  138 (278)
T ss_dssp             TTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSS-----SSH
T ss_pred             hccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcC-----cHH
Confidence            34566667778888888887632      2333344566666665 56899999999999998888875433     223


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHHHHhh-----cChhhhH----HHHhhhccCCCHHHHHHHHHHHHhhccccccc
Q 020587          164 PLLVQLLLKSSQDKRFVCEAAEKALVAMTTW-----VSPILLL----PKLQPYLKNRNPRIRAKASMCFSRSVPRLGVE  233 (324)
Q Consensus       164 ~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~-----vs~~~ll----~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~  233 (324)
                      .++..++.-....|.-++.++-..|..++..     +++...+    +.|...+.|.|+.||..+..++..+...+|..
T Consensus       139 ~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~~  217 (278)
T 4ffb_C          139 QSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNN  217 (278)
T ss_dssp             HHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC----
T ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCcc
Confidence            4455555556777888888888888887765     2334333    35667789999999999999999988888864

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=96.26  E-value=0.062  Score=56.56  Aligned_cols=179  Identities=13%  Similarity=0.106  Sum_probs=113.8

Q ss_pred             CCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHHH
Q 020587           92 DSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLL  171 (324)
Q Consensus        92 ~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d~ll~~LL~  171 (324)
                      ++.+|..+.-++-.+..++..-.+...+.+..++..+ ..+.+....|-..+|.+++.+...++... .+++.+++.|+.
T Consensus       459 ~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l-~~l~~~~~~vr~~~~~~l~~~~~~l~~~~-~~l~~vl~~l~~  536 (963)
T 2x19_B          459 EPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLI-PRISISNVQLADTVMFTIGALSEWLADHP-VMINSVLPLVLH  536 (963)
T ss_dssp             CSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHG-GGSCCCSHHHHHHHHHHHHHTHHHHHHCH-HHHTTTHHHHHH
T ss_pred             CCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHH-HhCCCCcHHHHHHHHHHHHHHHHHHHhCH-HHHHHHHHHHHH
Confidence            5679999999999898887643221122344444422 23343456688999999999998887543 677888888887


Q ss_pred             HhcCChHHHHHHHHHHHHHHHhhcChh------hhHHHHhhhccC--CCHHHHHHHHHHHHhhcccccccchhhccHHHH
Q 020587          172 KSSQDKRFVCEAAEKALVAMTTWVSPI------LLLPKLQPYLKN--RNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKL  243 (324)
Q Consensus       172 Ka~~sk~FI~e~A~~AL~amv~~vs~~------~ll~~L~~~~~h--KNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~l  243 (324)
                      ...+  .-|+..|..|+..+++.+...      .++..|...+.+  -+...|..+...+..++...+.+....+ .+.+
T Consensus       537 ~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~-~~~l  613 (963)
T 2x19_B          537 ALGN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKN-LHSL  613 (963)
T ss_dssp             HTTC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHH-HHHH
T ss_pred             HhCC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHH-HHHH
Confidence            7765  568899999999999876431      133333343432  3568888888888888877652323333 3444


Q ss_pred             HHHHHHh----c-cCCCHHHHHHHHHHHHHHHHHhhh
Q 020587          244 IQVAASQ----L-SDQLPESREAARTLLLELQSVYEK  275 (324)
Q Consensus       244 l~~l~~~----L-~D~~pEvR~~AR~~l~~L~~~~~~  275 (324)
                      ++.+...    + ++.+++.|......+..|-.++..
T Consensus       614 ~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~  650 (963)
T 2x19_B          614 ISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTT  650 (963)
T ss_dssp             HHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            4333322    2 234788887666666555555543

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=96.17  E-value=0.011  Score=56.81  Aligned_cols=146  Identities=13%  Similarity=0.088  Sum_probs=78.7

Q ss_pred             hhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhh-----
Q 020587          120 ILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTW-----  194 (324)
Q Consensus       120 ~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~-----  194 (324)
                      .++.+.+.+.+.+.|-...|.|+|+.|+..|+..-.+-...+++.+    -....+.+.+|.-.|-.+|..|.++     
T Consensus       136 m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v~~~~~~l----~~ll~d~n~~V~~~Al~lL~ei~~~d~~a~  211 (355)
T 3tjz_B          136 MLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVKRWVNEA----QEAASSDNIMVQYHALGLLYHVRKNDRLAV  211 (355)
T ss_dssp             THHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHHHTTHHHH----HHHTTCSSHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHHHHHHHHH----HHHhcCCCccHHHHHHHHHHHHHhhchHHH
Confidence            3567778889999999999999999999988876555554444332    2223444444444333333333321     


Q ss_pred             ----------------------------cC------hhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccH
Q 020587          195 ----------------------------VS------PILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGI  240 (324)
Q Consensus       195 ----------------------------vs------~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~  240 (324)
                                                  +.      ..++++.|.+.++|+|+.|--.++..+..+-. .+..     .+
T Consensus       212 ~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~-~~~~-----~~  285 (355)
T 3tjz_B          212 SKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPG-CSAK-----EL  285 (355)
T ss_dssp             HHHHHHHHSSCCSCHHHHHHHHHHHTCC-----------------CCCCCSSHHHHHHHHHHHTC---------------
T ss_pred             HHHHHHHhcCCCcChHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccC-CCHH-----HH
Confidence                                        00      12244456666777777777777777665322 1111     12


Q ss_pred             HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhh
Q 020587          241 DKLIQVAASQLSDQLPESREAARTLLLELQSVYEK  275 (324)
Q Consensus       241 ~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~~  275 (324)
                      ......+..|++.+++++|+.|-+.+..+...+++
T Consensus       286 ~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~  320 (355)
T 3tjz_B          286 APAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPS  320 (355)
T ss_dssp             --CCCTHHHHHHSSSSSSHHHHHHCC---------
T ss_pred             HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcH
Confidence            33455666778888899999998888877777663

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=96.14  E-value=0.079  Score=56.01  Aligned_cols=177  Identities=11%  Similarity=0.099  Sum_probs=113.8

Q ss_pred             CCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHcc--CcchHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHHH
Q 020587           94 KDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLK--NPRSAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLL  171 (324)
Q Consensus        94 ~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vk--sLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d~ll~~LL~  171 (324)
                      .+|..+.-+|-.+..++..-++...+.+..++. ++..+.  +....|-..||.+++.+...+.... .+++.+++.|+.
T Consensus       476 ~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~-~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~-~~l~~vl~~l~~  553 (971)
T 2x1g_F          476 THWTKLEACIYSFQSVAEHFGGEEKRQIPRLMR-VLAEIPYEKLNVKLLGTALETMGSYCNWLMENP-AYIPPAINLLVR  553 (971)
T ss_dssp             TCCHHHHHHHHHHHHTTTC------CHHHHHHH-HHHHSCTTTSCHHHHHHHHHHHHHTHHHHC-----CHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHH-HHHhcCccccCHHHHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHH
Confidence            699999999999999977544444456677766 555555  4578899999999999999988654 678888888887


Q ss_pred             HhcCChHHHHHHHHHHHHHHHhhcChh------hhHHHHhhhccC--CCHHHHHHHHHHHHhhcccccccchhhc---cH
Q 020587          172 KSSQDKRFVCEAAEKALVAMTTWVSPI------LLLPKLQPYLKN--RNPRIRAKASMCFSRSVPRLGVEGIKEY---GI  240 (324)
Q Consensus       172 Ka~~sk~FI~e~A~~AL~amv~~vs~~------~ll~~L~~~~~h--KNp~VR~~aa~~L~~~v~~~g~~~i~~~---~~  240 (324)
                      .. +  .-|+..|..|+..+++.+...      .++..|...+.+  -....+..+...+..++...+.+....+   -+
T Consensus       554 ~l-~--~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll  630 (971)
T 2x1g_F          554 GL-N--SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIV  630 (971)
T ss_dssp             HH-H--SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHH
T ss_pred             Hh-C--hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            77 3  457899999999999877432      133333344443  2467888888888888876653333222   13


Q ss_pred             HHHHHHHHHhccCC--CHHHHHHHHHHHHHHHHHhhh
Q 020587          241 DKLIQVAASQLSDQ--LPESREAARTLLLELQSVYEK  275 (324)
Q Consensus       241 ~~ll~~l~~~L~D~--~pEvR~~AR~~l~~L~~~~~~  275 (324)
                      +.+++.+...+...  +++.+...-..+..|-.++..
T Consensus       631 ~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~  667 (971)
T 2x1g_F          631 SPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSS  667 (971)
T ss_dssp             HHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhh
Confidence            44444444444443  555666666666666655553

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=96.13  E-value=0.13  Score=54.31  Aligned_cols=182  Identities=14%  Similarity=0.142  Sum_probs=111.8

Q ss_pred             HHhhcCCC--CHHHHHHHHHHHHHHHhH---cHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhh
Q 020587           87 LVAGLDSK--DWVVVCEALNNVRRLSIF---HKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDL  161 (324)
Q Consensus        87 ~l~~L~s~--dW~~r~eaL~~LRrLa~~---h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~  161 (324)
                      ++..+.++  +=.-|..++..+-+++.+   |++    .+..+++.++..+ +  ..|+..||.++..|.+.++..+.||
T Consensus       509 ~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~----~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l~p~  581 (971)
T 2x1g_F          509 VLAEIPYEKLNVKLLGTALETMGSYCNWLMENPA----YIPPAINLLVRGL-N--SSMSAQATLGLKELCRDCQLQLKPY  581 (971)
T ss_dssp             HHHHSCTTTSCHHHHHHHHHHHHHTHHHHC--------CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHHHHHH
T ss_pred             HHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHH----HHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHhcccc
Confidence            44445532  444577777777777653   343    3455555555555 3  4589999999999999999999999


Q ss_pred             HHHHHHHHHHHhcC--ChHHHHHHHHHHHHHHHhhcChhhhHH-----------HHhhhccCC--CHHHHHHHHHHHH--
Q 020587          162 LDPLLVQLLLKSSQ--DKRFVCEAAEKALVAMTTWVSPILLLP-----------KLQPYLKNR--NPRIRAKASMCFS--  224 (324)
Q Consensus       162 ~d~ll~~LL~Ka~~--sk~FI~e~A~~AL~amv~~vs~~~ll~-----------~L~~~~~hK--Np~VR~~aa~~L~--  224 (324)
                      ++.++..|+.-...  ...-.+..+-.|+..++..+++....+           .+...++..  ++.-+.....++.  
T Consensus       582 ~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L  661 (971)
T 2x1g_F          582 ADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMI  661 (971)
T ss_dssp             HHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHH
Confidence            99999999887765  356778888888888888765332222           122222222  3334444444443  


Q ss_pred             -hhccccccc------------chhhccHHHHHHHHHHhccC--CCHHHHHHHHHHHHHHHHHhhhc
Q 020587          225 -RSVPRLGVE------------GIKEYGIDKLIQVAASQLSD--QLPESREAARTLLLELQSVYEKS  276 (324)
Q Consensus       225 -~~v~~~g~~------------~i~~~~~~~ll~~l~~~L~D--~~pEvR~~AR~~l~~L~~~~~~~  276 (324)
                       .++..++..            .+..+ .+.+++.+...+.+  .++++.+.+-+++..+...|+..
T Consensus       662 ~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~  727 (971)
T 2x1g_F          662 STLFSSLNTDVDEQATDQPIVQPVLLV-MQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSS  727 (971)
T ss_dssp             HHHHHHHTC-------------CCHHH-HHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHhhcCCCcCcccccccCCCchHHH-HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhh
Confidence             333333221            11111 45555655555543  36789888888888877777644

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=96.07  E-value=0.77  Score=41.25  Aligned_cols=183  Identities=14%  Similarity=0.101  Sum_probs=116.5

Q ss_pred             HHHHHHhhcCCCCH--HHHHHHHHHHHHHHhHcHHHHHHh-hhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHh---hh
Q 020587           83 SVKTLVAGLDSKDW--VVVCEALNNVRRLSIFHKEAMLDI-LGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAY---ND  156 (324)
Q Consensus        83 ~L~~~l~~L~s~dW--~~r~eaL~~LRrLa~~h~~~l~~~-L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L---~~  156 (324)
                      .+..++..|.+.|.  +.++.|...|+.|+..+++.-... -...++.++..+++....+-..|+-++.-|...-   +.
T Consensus         9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~   88 (233)
T 3tt9_A            9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKL   88 (233)
T ss_dssp             CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence            46788999999998  788899999999988765422211 2245688999999999999999999999997531   11


Q ss_pred             hHHhhHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHhhcChhhh-----HHHHh-----hhcc-----------CCCHH
Q 020587          157 RMIDLLDPLLVQLLLKSS-QDKRFVCEAAEKALVAMTTWVSPILL-----LPKLQ-----PYLK-----------NRNPR  214 (324)
Q Consensus       157 ~m~~~~d~ll~~LL~Ka~-~sk~FI~e~A~~AL~amv~~vs~~~l-----l~~L~-----~~~~-----------hKNp~  214 (324)
                      .+..  ...++.|+.-.. ....-+++.|..+|-.+..+-.....     ++.|.     ++..           ..++.
T Consensus        89 ~I~~--~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~  166 (233)
T 3tt9_A           89 EVAE--LNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFD  166 (233)
T ss_dssp             HHHH--TTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHH
T ss_pred             HHHH--cCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhccHHHHHHHHhccccCCcccccccccccchHH
Confidence            1111  134566655554 23566888888888877654333221     23222     1211           24679


Q ss_pred             HHHHHHHHHHhhcccc--cccchhhc-c-HHHHHHHHHHhccCCC--HHHHHHHHHHHH
Q 020587          215 IRAKASMCFSRSVPRL--GVEGIKEY-G-IDKLIQVAASQLSDQL--PESREAARTLLL  267 (324)
Q Consensus       215 VR~~aa~~L~~~v~~~--g~~~i~~~-~-~~~ll~~l~~~L~D~~--pEvR~~AR~~l~  267 (324)
                      |+..++.+|..+--.-  +...+... | .+.|+..+...+.++.  ...++.+-.++.
T Consensus       167 v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~  225 (233)
T 3tt9_A          167 IFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILH  225 (233)
T ss_dssp             HHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHH
Confidence            9999999988876521  12224332 3 5888888887776554  344555544443

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=96.00  E-value=0.11  Score=56.48  Aligned_cols=139  Identities=8%  Similarity=0.052  Sum_probs=104.6

Q ss_pred             CCHHHHHHHHHHHHHHHhHc-HHHHHHhhhhHHHHHHHHcc-----CcchHHHHHHHHHHHHHHHHhhhhHHhhHHHHHH
Q 020587           94 KDWVVVCEALNNVRRLSIFH-KEAMLDILGDVIPLVVKSLK-----NPRSAVCKTAIMTAADIFSAYNDRMIDLLDPLLV  167 (324)
Q Consensus        94 ~dW~~r~eaL~~LRrLa~~h-~~~l~~~L~~iv~~l~~~vk-----sLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d~ll~  167 (324)
                      .+|..+.-++--++.++..- ++...+.+..+++.++..+.     +.+..|..++|-++|...+.+..+ -.+++.++.
T Consensus       465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~-~~~L~~vl~  543 (1023)
T 4hat_C          465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAH-WNFLRTVIL  543 (1023)
T ss_dssp             CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHC-HHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhcc-HHHHHHHHH
Confidence            58999999999999987642 44466778888887777665     355566668999999999988654 346899999


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHHHHhhcChhh--------------hHHHHhhhccCCCHHHHHHHHHHHHhhccccccc
Q 020587          168 QLLLKSSQDKRFVCEAAEKALVAMTTWVSPIL--------------LLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVE  233 (324)
Q Consensus       168 ~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~--------------ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~  233 (324)
                      .|+..+.+++.-|++.|..|+..+++.|...-              ++..+......-.+.-+..+...+..++...+..
T Consensus       544 ~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~~  623 (1023)
T 4hat_C          544 KLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSV  623 (1023)
T ss_dssp             HHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCSH
T ss_pred             HHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCH
Confidence            99999998888899999999999999876321              2223334334445666677778888888877654

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=95.99  E-value=0.13  Score=54.48  Aligned_cols=190  Identities=14%  Similarity=0.154  Sum_probs=125.5

Q ss_pred             CHHHHHH-HHHhhcCCC---CHHHHHHHHHHHHHHHhH-cHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHH
Q 020587           79 DIDTSVK-TLVAGLDSK---DWVVVCEALNNVRRLSIF-HKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSA  153 (324)
Q Consensus        79 dpe~~L~-~~l~~L~s~---dW~~r~eaL~~LRrLa~~-h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~  153 (324)
                      +.+..+. .++..|.+.   .=..|..++..+-+++.+ +++    .+..++..++..+.+..--|...||.++..++..
T Consensus       451 ~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~~----~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~  526 (960)
T 1wa5_C          451 NVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKA----QLIELMPILATFLQTDEYVVYTYAAITIEKILTI  526 (960)
T ss_dssp             CHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHH----HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred             cHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCHH----HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhc
Confidence            4444432 345555544   444577888888888764 343    4666777788888887777889999999998874


Q ss_pred             h-----------hhhHHhhHHHHHHHHHHHhcCC-----hHHHHHHHHHHHHHHHhh----cCh--hhhHHHHh----hh
Q 020587          154 Y-----------NDRMIDLLDPLLVQLLLKSSQD-----KRFVCEAAEKALVAMTTW----VSP--ILLLPKLQ----PY  207 (324)
Q Consensus       154 L-----------~~~m~~~~d~ll~~LL~Ka~~s-----k~FI~e~A~~AL~amv~~----vs~--~~ll~~L~----~~  207 (324)
                      .           +..+.||++.++..|+..+...     +....+.+-.||..++..    +.|  ..+++.|.    ..
T Consensus       527 ~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~  606 (960)
T 1wa5_C          527 RESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIM  606 (960)
T ss_dssp             BSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence            2           4668899999999998776552     111224455555555443    333  12333332    22


Q ss_pred             cc-CCCHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Q 020587          208 LK-NRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSVY  273 (324)
Q Consensus       208 ~~-hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~  273 (324)
                      .+ ..++..+..+..++..++...+++....+ .+.+++.+...++....+.+.++..++..+....
T Consensus       607 ~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~-~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~~  672 (960)
T 1wa5_C          607 AKNPSNPRFTHYTFESIGAILNYTQRQNLPLL-VDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQS  672 (960)
T ss_dssp             TTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHH-HHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHC
T ss_pred             HhCCCCcHHHHHHHHHHHHHHhcCCcchHHHH-HHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHhc
Confidence            22 35778888889999888887555544444 6677777777776666788888888888777665

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=95.79  E-value=0.58  Score=49.11  Aligned_cols=182  Identities=15%  Similarity=0.128  Sum_probs=114.0

Q ss_pred             HHhhcCCCCHHHHHHHHHHHHHHHhH---cHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhHH
Q 020587           87 LVAGLDSKDWVVVCEALNNVRRLSIF---HKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLD  163 (324)
Q Consensus        87 ~l~~L~s~dW~~r~eaL~~LRrLa~~---h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d  163 (324)
                      .+..+.+++-.-+..++..+-+++.+   |++    .+..++..+...+.+  ..|...||.++..++..+++.+.||++
T Consensus       494 ~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~----~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~~  567 (963)
T 2x19_B          494 LIPRISISNVQLADTVMFTIGALSEWLADHPV----MINSVLPLVLHALGN--PELSVSSVSTLKKICRECKYDLPPYAA  567 (963)
T ss_dssp             HGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHH----HHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTHH
T ss_pred             HHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHH----HHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            33445545566677788877777654   443    466677777788887  568899999999999999999999999


Q ss_pred             HHHHHHHHHhcC--ChHHHHHHHHHHHHHHHhhcChhh-------hHHHHhhhc----c-CCCHHHHHHH---HHHHHhh
Q 020587          164 PLLVQLLLKSSQ--DKRFVCEAAEKALVAMTTWVSPIL-------LLPKLQPYL----K-NRNPRIRAKA---SMCFSRS  226 (324)
Q Consensus       164 ~ll~~LL~Ka~~--sk~FI~e~A~~AL~amv~~vs~~~-------ll~~L~~~~----~-hKNp~VR~~a---a~~L~~~  226 (324)
                      .++..|+.-+..  -..-.++.+-.|+..++..+++..       +++.+...+    + ..++..|...   ..+|..+
T Consensus       568 ~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i  647 (963)
T 2x19_B          568 NIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNL  647 (963)
T ss_dssp             HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence            999998876653  355677888888888887765222       222222211    1 2366665543   3444444


Q ss_pred             ccccccc---------------------chhhccHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHHHHhhh
Q 020587          227 VPRLGVE---------------------GIKEYGIDKLIQVAASQLS--DQLPESREAARTLLLELQSVYEK  275 (324)
Q Consensus       227 v~~~g~~---------------------~i~~~~~~~ll~~l~~~L~--D~~pEvR~~AR~~l~~L~~~~~~  275 (324)
                      +..++..                     .+.. -.+.+.+.+.+.++  -.++++++.+-+++..+...++.
T Consensus       648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~  718 (963)
T 2x19_B          648 FTTLDISHHEDDHEGPELRKLPVPQGPNPVVV-VLQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLD  718 (963)
T ss_dssp             HHHCCSSCCC---------------CCCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSS
T ss_pred             HHHcCCCcccccccccccccCCCCCCCCchHH-HHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhcc
Confidence            4443321                     0111 13444444444332  13568888888787776666653

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=95.68  E-value=0.096  Score=53.44  Aligned_cols=59  Identities=14%  Similarity=-0.002  Sum_probs=39.3

Q ss_pred             ccCCCH--HHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Q 020587          208 LKNRNP--RIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSVY  273 (324)
Q Consensus       208 ~~hKNp--~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~  273 (324)
                      ++|+|.  .|.-.++.++..+-    ..   ..-+...+..+.++|...++++|+.|-..+..+...+
T Consensus       300 l~~~n~~~aVl~ea~~~i~~l~----~~---~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~  360 (621)
T 2vgl_A          300 VQHSNAKNAVLFEAISLIIHHD----SE---PNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSE  360 (621)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHC----CC---HHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCT
T ss_pred             ccccchHHHHHHHHHHHHHhcC----Cc---HHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcc
Confidence            345555  56555555555432    11   0115567788889999999999999999888776554

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=95.38  E-value=0.33  Score=46.11  Aligned_cols=146  Identities=15%  Similarity=0.142  Sum_probs=101.9

Q ss_pred             HHHHHhhc-CCCCHHHHHHHHHHHHHHHhHcHHHHHHh--hhhHHHHHHHHccCcch----HHHHHHHHHHHHHHHHh--
Q 020587           84 VKTLVAGL-DSKDWVVVCEALNNVRRLSIFHKEAMLDI--LGDVIPLVVKSLKNPRS----AVCKTAIMTAADIFSAY--  154 (324)
Q Consensus        84 L~~~l~~L-~s~dW~~r~eaL~~LRrLa~~h~~~l~~~--L~~iv~~l~~~vksLRS----~Vsk~A~~tl~dLf~~L--  154 (324)
                      +..++..| ++.+...+..++..|+.|+.++++.-...  -...++.++..+++...    .|.++|+-++..|...+  
T Consensus       172 Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~  251 (354)
T 3nmw_A          172 VKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIAT  251 (354)
T ss_dssp             HHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccC
Confidence            44555543 56778888888889999987554321111  24577888888876543    58999999999887632  


Q ss_pred             hhhHHhh-H-HHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChh-------hhHHHHhhhccCCCHHHHHHHHHHHHh
Q 020587          155 NDRMIDL-L-DPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPI-------LLLPKLQPYLKNRNPRIRAKASMCFSR  225 (324)
Q Consensus       155 ~~~m~~~-~-d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~-------~ll~~L~~~~~hKNp~VR~~aa~~L~~  225 (324)
                      ...-... . ...++.|+......+.-+.+.|..||..++......       -.+|.|..-++++++.+|..++..|.+
T Consensus       252 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~n  331 (354)
T 3nmw_A          252 NEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRN  331 (354)
T ss_dssp             CHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            1221111 1 136788888887777778999999998876432221       246678888889999999999999999


Q ss_pred             hccc
Q 020587          226 SVPR  229 (324)
Q Consensus       226 ~v~~  229 (324)
                      +...
T Consensus       332 L~~~  335 (354)
T 3nmw_A          332 LMAN  335 (354)
T ss_dssp             HHTT
T ss_pred             HHcC
Confidence            9886

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=95.29  E-value=0.66  Score=45.75  Aligned_cols=147  Identities=16%  Similarity=0.162  Sum_probs=103.3

Q ss_pred             HHHHHhh-cCCCCHHHHHHHHHHHHHHHhHcHHHHHHh--hhhHHHHHHHHccCcch----HHHHHHHHHHHHHHHHh--
Q 020587           84 VKTLVAG-LDSKDWVVVCEALNNVRRLSIFHKEAMLDI--LGDVIPLVVKSLKNPRS----AVCKTAIMTAADIFSAY--  154 (324)
Q Consensus        84 L~~~l~~-L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~--L~~iv~~l~~~vksLRS----~Vsk~A~~tl~dLf~~L--  154 (324)
                      +..++.. +.+.+...+..++..|+.|+.++++.-...  -...++.++..+.+...    .+.++|+-++..|...+  
T Consensus       288 I~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~  367 (458)
T 3nmz_A          288 VKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIAT  367 (458)
T ss_dssp             HHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccC
Confidence            4456665 356788888889999999988654322111  24577888888876543    58999999999888631  


Q ss_pred             hhhHHhh-H-HHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcCh-------hhhHHHHhhhccCCCHHHHHHHHHHHHh
Q 020587          155 NDRMIDL-L-DPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSP-------ILLLPKLQPYLKNRNPRIRAKASMCFSR  225 (324)
Q Consensus       155 ~~~m~~~-~-d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~-------~~ll~~L~~~~~hKNp~VR~~aa~~L~~  225 (324)
                      ...-... . ...++.|+......+.-+.+.|..||..++.....       .-.++.|...++++++.+|..++..|.+
T Consensus       368 ~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~n  447 (458)
T 3nmz_A          368 NEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRN  447 (458)
T ss_dssp             CHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            2222222 1 13678888888777777999999999888743222       1246677788889999999999999999


Q ss_pred             hcccc
Q 020587          226 SVPRL  230 (324)
Q Consensus       226 ~v~~~  230 (324)
                      ++..-
T Consensus       448 L~~~~  452 (458)
T 3nmz_A          448 LMANR  452 (458)
T ss_dssp             HHTCC
T ss_pred             HHcCC
Confidence            88763

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=95.28  E-value=0.64  Score=45.10  Aligned_cols=110  Identities=18%  Similarity=0.090  Sum_probs=75.5

Q ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHh-hhhHHHHHHHHcc-CcchHHHHHHHHHHHHHHHHhhhhHHhh
Q 020587           84 VKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDI-LGDVIPLVVKSLK-NPRSAVCKTAIMTAADIFSAYNDRMIDL  161 (324)
Q Consensus        84 L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~-L~~iv~~l~~~vk-sLRS~Vsk~A~~tl~dLf~~L~~~m~~~  161 (324)
                      +..++..|++.+-..+..|...|+.|+..+++.-... -...++.++..++ +....+..+|+-++..|... ...-...
T Consensus        46 i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i  124 (457)
T 1xm9_A           46 ICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEEL  124 (457)
T ss_dssp             HHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHH
Confidence            5677888888888899999999999988655433222 1346788888888 78889999999999999876 2111112


Q ss_pred             HHHHHHHHHHHh--------cCC--------hHHHHHHHHHHHHHHHhh
Q 020587          162 LDPLLVQLLLKS--------SQD--------KRFVCEAAEKALVAMTTW  194 (324)
Q Consensus       162 ~d~ll~~LL~Ka--------~~s--------k~FI~e~A~~AL~amv~~  194 (324)
                      ++..++.|+...        ...        ..-+...|..||..++.+
T Consensus       125 ~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~  173 (457)
T 1xm9_A          125 IADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSA  173 (457)
T ss_dssp             HHHHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTS
T ss_pred             HhccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccC
Confidence            336777777776        221        223444777777776654

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=95.21  E-value=0.91  Score=47.81  Aligned_cols=186  Identities=13%  Similarity=0.142  Sum_probs=125.6

Q ss_pred             HHHHHhhcCCC-CHH--HHHHHHHHHHHHHhH-cHHHHHHh--hhhHHHHHHHHccC-c------------chHH-HHHH
Q 020587           84 VKTLVAGLDSK-DWV--VVCEALNNVRRLSIF-HKEAMLDI--LGDVIPLVVKSLKN-P------------RSAV-CKTA  143 (324)
Q Consensus        84 L~~~l~~L~s~-dW~--~r~eaL~~LRrLa~~-h~~~l~~~--L~~iv~~l~~~vks-L------------RS~V-sk~A  143 (324)
                      ++.++..|.+. +..  -+..|...|-+|.+. +|..+.+.  ..+.++.++..+.. +            ++.+ ..+|
T Consensus       500 l~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feA  579 (778)
T 3opb_A          500 VKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEA  579 (778)
T ss_dssp             HHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHH
T ss_pred             HHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHH
Confidence            45566666655 332  578888889898864 47765421  12678888888771 2            3334 6699


Q ss_pred             HHHHHHHHHHhh---hhHHh-hHH--HHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcCh--hhh-----------HHHH
Q 020587          144 IMTAADIFSAYN---DRMID-LLD--PLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSP--ILL-----------LPKL  204 (324)
Q Consensus       144 ~~tl~dLf~~L~---~~m~~-~~d--~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~--~~l-----------l~~L  204 (324)
                      ++++.-|+..=.   ..... .+.  ..++.|.....+.+..|+.+|..++..++.+-..  .++           ++.|
T Consensus       580 L~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lL  659 (778)
T 3opb_A          580 LLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNIL  659 (778)
T ss_dssp             HHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHH
T ss_pred             HHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHH
Confidence            999999987531   12211 222  3677777777778999999999999998865432  122           5567


Q ss_pred             hhhccCCCHHHHHHHHHHHHhhcccccc--cchhhccHHHHHHHHHHhccC--CCHHHHHHHHHHHHHHHH
Q 020587          205 QPYLKNRNPRIRAKASMCFSRSVPRLGV--EGIKEYGIDKLIQVAASQLSD--QLPESREAARTLLLELQS  271 (324)
Q Consensus       205 ~~~~~hKNp~VR~~aa~~L~~~v~~~g~--~~i~~~~~~~ll~~l~~~L~D--~~pEvR~~AR~~l~~L~~  271 (324)
                      ...+...+..+|+.++..|..+......  ..+.  .....++.+...+.|  .++++|..|-.++.-|..
T Consensus       660 V~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll--~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~  728 (778)
T 3opb_A          660 VKLLQLSDVESQRAVAAIFANIATTIPLIAKELL--TKKELIENAIQVFADQIDDIELRQRLLMLFFGLFE  728 (778)
T ss_dssp             HHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHT--TCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred             HHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHH--HccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence            7788899999999999988887542211  1122  234566667777778  799999999888876655

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=95.17  E-value=0.041  Score=43.96  Aligned_cols=118  Identities=12%  Similarity=0.088  Sum_probs=82.0

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhH
Q 020587           83 SVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLL  162 (324)
Q Consensus        83 ~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~  162 (324)
                      .+..+...|+++||..|..|+..|.++..  +         -+..+++.+++....|-..|+.+++.+..          
T Consensus        13 ~~~~l~~~L~~~~~~vR~~A~~~L~~~~~--~---------~~~~L~~~L~d~~~~vR~~A~~aL~~~~~----------   71 (131)
T 1te4_A           13 GLVPRGSHMADENKWVRRDVSTALSRMGD--E---------AFEPLLESLSNEDWRIRGAAAWIIGNFQD----------   71 (131)
T ss_dssp             --------CCSSCCCSSSSCCSSTTSCSS--T---------THHHHHHGGGCSCHHHHHHHHHHHGGGCS----------
T ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHhCc--h---------HHHHHHHHHcCCCHHHHHHHHHHHHhcCC----------
Confidence            34467777888899888777766554421  1         13667788889888898999988776531          


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhhhHHHHhhhccCCCHHHHHHHHHHHHh
Q 020587          163 DPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPILLLPKLQPYLKNRNPRIRAKASMCFSR  225 (324)
Q Consensus       163 d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~ll~~L~~~~~hKNp~VR~~aa~~L~~  225 (324)
                      ...++.|+..+.+.+..||..|-.+|..+-    ....++.|...+++.++.||..++..|..
T Consensus        72 ~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~----~~~a~~~L~~~l~d~~~~vr~~A~~aL~~  130 (131)
T 1te4_A           72 ERAVEPLIKLLEDDSGFVRSGAARSLEQIG----GERVRAAMEKLAETGTGFARKVAVNYLET  130 (131)
T ss_dssp             HHHHHHHHHHHHHCCTHHHHHHHHHHHHHC----SHHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----cHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence            234566666666778899999999998753    45678888888899999999999877643

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=95.08  E-value=0.055  Score=50.00  Aligned_cols=81  Identities=16%  Similarity=0.019  Sum_probs=67.3

Q ss_pred             CHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHH---HHHHHHccCcchHHHHHHHHHHHHHHHHhh
Q 020587           79 DIDTSVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVI---PLVVKSLKNPRSAVCKTAIMTAADIFSAYN  155 (324)
Q Consensus        79 dpe~~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv---~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~  155 (324)
                      .|...+..+++++.+++|..|.+.|..+..+...|.-.    -...+   +.|.+.+.|..+.|=.+|+.|+.++|...|
T Consensus       164 ~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~G  239 (266)
T 2of3_A          164 GPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEG  239 (266)
T ss_dssp             CHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhh
Confidence            55556778888999999999999999999997766321    13356   889999999999999999999999999999


Q ss_pred             hhHHhhHH
Q 020587          156 DRMIDLLD  163 (324)
Q Consensus       156 ~~m~~~~d  163 (324)
                      +.+-.++.
T Consensus       240 d~v~k~lg  247 (266)
T 2of3_A          240 DQMWKAAG  247 (266)
T ss_dssp             THHHHHHC
T ss_pred             HHHHHHHh
Confidence            98766653

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=94.95  E-value=0.11  Score=53.24  Aligned_cols=164  Identities=21%  Similarity=0.155  Sum_probs=103.9

Q ss_pred             HHHHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhh
Q 020587           82 TSVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDL  161 (324)
Q Consensus        82 ~~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~  161 (324)
                      ..+..++.++....|+.|-.||.-|+-+    .+++.. +..+++.++..+.|.-=-|--.|..++..++  ....    
T Consensus       263 ~IL~qLV~~l~~~~WEVRHGGLLGLKYL----~DLL~~-Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA--~p~~----  331 (800)
T 3oc3_A          263 DIIEQLVGFLDSGDWQVQFSGLIALGYL----KEFVED-KDGLCRKLVSLLSSPDEDIKLLSAELLCHFP--ITDS----  331 (800)
T ss_dssp             CHHHHHTTGGGCSCHHHHHHHHHHHHHT----GGGCCC-HHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC--CSST----
T ss_pred             HHHHHHHhhcCCCCeeehhhhHHHHHHH----HHHHHH-HHHHHHHHHhhcCCcccHHHHHHHHHhhhhc--chhh----
Confidence            3455566666788999999999999988    334433 7888888888888776666666777766666  2222    


Q ss_pred             HHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHhh----cChhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccch
Q 020587          162 LDPLLVQLLLKSS--QDKRFVCEAAEKALVAMTTW----VSPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGI  235 (324)
Q Consensus       162 ~d~ll~~LL~Ka~--~sk~FI~e~A~~AL~amv~~----vs~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i  235 (324)
                      ++.++..|-....  ++-..-....-.-|.+++.+    ...+.++|.|.+.+.|--+.||..+.+.+...+    .   
T Consensus       332 l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a~~dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL----~---  404 (800)
T 3oc3_A          332 LDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPELSIPPERLKDIFPCFTSPVPEVRTSILNMVKNLS----E---  404 (800)
T ss_dssp             HHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTCCCCSGGGGGTGGGGTCSSHHHHHHHHHHTTTCC----C---
T ss_pred             HHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcccccChHHHHHHHhhhcCCcHHHHHHHHHHHHHHH----h---
Confidence            3333333322222  21000001111122222222    233479999999999999999999999987777    1   


Q ss_pred             hhccHHHHHHHHHHhccCCCHHHHHHHHHHHH
Q 020587          236 KEYGIDKLIQVAASQLSDQLPESREAARTLLL  267 (324)
Q Consensus       236 ~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~  267 (324)
                          -+.+--.--..|-+.++++|+.+.++..
T Consensus       405 ----~~~LRLIFQNILLE~neeIl~lS~~VWk  432 (800)
T 3oc3_A          405 ----ESIDFLVAEVVLIEEKDEIREMAIKLLK  432 (800)
T ss_dssp             ----HHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred             ----hhHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence                1112223345678999999999998773

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=94.61  E-value=0.52  Score=50.56  Aligned_cols=170  Identities=10%  Similarity=0.068  Sum_probs=101.5

Q ss_pred             CHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccC--cchHHHHHHHHHHHHHHHHhhhhHH-hhHHHHHHHHHH
Q 020587           95 DWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKN--PRSAVCKTAIMTAADIFSAYNDRMI-DLLDPLLVQLLL  171 (324)
Q Consensus        95 dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vks--LRS~Vsk~A~~tl~dLf~~L~~~m~-~~~d~ll~~LL~  171 (324)
                      +|..+..+-+.|+.++...++.+...+-   ..+...+.+  ..=...-.||.+++-+...+...++ ++++.+++.|+.
T Consensus       426 ~~~~~~~~~~~L~~l~~~~~~~~l~~v~---~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~  502 (1049)
T 3m1i_C          426 TIQLYKSEREVLVYLTHLNVIDTEEIMI---SKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLD  502 (1049)
T ss_dssp             HHHHHHHHHHHHHHHHHHCHHHHHHHHH---HHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHccCHHHHHHHHH---HHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHH
Confidence            3555656666777776544543322222   222223321  2223455688888888776665554 447777777775


Q ss_pred             Hhc-----CChHHHHHHHHHHHHHHHhhc--Ch---hhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchh-----
Q 020587          172 KSS-----QDKRFVCEAAEKALVAMTTWV--SP---ILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIK-----  236 (324)
Q Consensus       172 Ka~-----~sk~FI~e~A~~AL~amv~~v--s~---~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~-----  236 (324)
                      -..     +.+..++..+-.++..+..+.  ++   ..+++.|..++.+.|+.||..+|..+.++++..+.. +.     
T Consensus       503 l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~-l~~~~~~  581 (1049)
T 3m1i_C          503 LTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYH-FVIQQPR  581 (1049)
T ss_dssp             HTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHH-HHSCCTT
T ss_pred             HHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH-hhcccCC
Confidence            332     123334434556666444442  22   225556778899999999999999999999875433 22     


Q ss_pred             ---hccHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 020587          237 ---EYGIDKLIQVAASQLSDQLPESREAARTLLLEL  269 (324)
Q Consensus       237 ---~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L  269 (324)
                         .+ .+.+++.+...+.+-..+.+...-+++..+
T Consensus       582 ~~~p~-~~~il~~l~~~~~~~~~~~~~~~~eai~~i  616 (1049)
T 3m1i_C          582 ESEPF-IQTIIRDIQKTTADLQPQQVHTFYKACGII  616 (1049)
T ss_dssp             CSSCH-HHHHHHTHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred             CCCcH-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence               22 677888777778776666665544444433

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=94.57  E-value=0.5  Score=50.86  Aligned_cols=92  Identities=22%  Similarity=0.214  Sum_probs=64.2

Q ss_pred             HHHHHHHhc-CChHHHHHHHHHHHHHHHhhcChhhhHHHHh-hhccCCCHHHHHHHHHHHHhhcccccccchhhccHHHH
Q 020587          166 LVQLLLKSS-QDKRFVCEAAEKALVAMTTWVSPILLLPKLQ-PYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKL  243 (324)
Q Consensus       166 l~~LL~Ka~-~sk~FI~e~A~~AL~amv~~vs~~~ll~~L~-~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~l  243 (324)
                      +..||+.+. +.+.+||..|-.+|..|.-. .+ ..++.+. ...++.+|.||..++..|-.+..  |.      +...+
T Consensus       579 Iq~LL~~~~~d~~d~VRraAViaLGlI~~g-~~-e~v~rlv~~L~~~~d~~VR~gAalALGli~a--Gn------~~~~a  648 (963)
T 4ady_A          579 VKRLLHVAVSDSNDDVRRAAVIALGFVLLR-DY-TTVPRIVQLLSKSHNAHVRCGTAFALGIACA--GK------GLQSA  648 (963)
T ss_dssp             HHHHHHHHHHCSCHHHHHHHHHHHHHHTSS-SC-SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTS--SS------CCHHH
T ss_pred             HHHHHHHhccCCcHHHHHHHHHHHHhhccC-CH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcc--CC------CcHHH
Confidence            445777754 55778888877777654332 23 3445444 45567889999998887765543  12      24667


Q ss_pred             HHHHHHhccCCCHHHHHHHHHHHH
Q 020587          244 IQVAASQLSDQLPESREAARTLLL  267 (324)
Q Consensus       244 l~~l~~~L~D~~pEvR~~AR~~l~  267 (324)
                      ++.+..++.|.+.+||+.|-.++.
T Consensus       649 id~L~~L~~D~d~~Vrq~Ai~ALG  672 (963)
T 4ady_A          649 IDVLDPLTKDPVDFVRQAAMIALS  672 (963)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred             HHHHHHHccCCCHHHHHHHHHHHH
Confidence            888999999999999999998875

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=94.57  E-value=0.76  Score=46.85  Aligned_cols=186  Identities=17%  Similarity=0.132  Sum_probs=114.1

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHh-hhhHHHHHHHHccCcchHHHHHHHHHHHHHHHH----hhhh
Q 020587           83 SVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDI-LGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSA----YNDR  157 (324)
Q Consensus        83 ~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~-L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~----L~~~  157 (324)
                      .+..++..|.+.|-..+++|...|+.|+..+++.-... -...++.++..+++....|..+|+.++.-|...    .+..
T Consensus        49 ~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~  128 (584)
T 3l6x_A           49 ELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIA  128 (584)
T ss_dssp             CHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHH
T ss_pred             cHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHH
Confidence            36788889999998999999999999997665432211 234578899999999999999999999999752    2222


Q ss_pred             HHhhHHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHhhcCh---------hhhHHHH-hhhcc-------------CCCH
Q 020587          158 MIDLLDPLLVQLLLKSSQ-DKRFVCEAAEKALVAMTTWVSP---------ILLLPKL-QPYLK-------------NRNP  213 (324)
Q Consensus       158 m~~~~d~ll~~LL~Ka~~-sk~FI~e~A~~AL~amv~~vs~---------~~ll~~L-~~~~~-------------hKNp  213 (324)
                      +..  ...++.|+..+.. ....+.+.|..||-.+..+-..         +.++..| .++..             ...+
T Consensus       129 I~~--~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~  206 (584)
T 3l6x_A          129 IKN--CDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWE  206 (584)
T ss_dssp             HHH--TTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC----------CCCCH
T ss_pred             HHH--cCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhcccccccccccccccccccccH
Confidence            221  1345666655543 3456778888787665442111         1122222 11111             1247


Q ss_pred             HHHHHHHHHHHhhccccc--ccchhh-cc-HHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHH
Q 020587          214 RIRAKASMCFSRSVPRLG--VEGIKE-YG-IDKLIQVAASQL--SDQLPESREAARTLLLELQ  270 (324)
Q Consensus       214 ~VR~~aa~~L~~~v~~~g--~~~i~~-~~-~~~ll~~l~~~L--~D~~pEvR~~AR~~l~~L~  270 (324)
                      .|+..++.+|.++...-.  ...+.. .| .+.|+..+...+  .+.+....+.+-.+++.|.
T Consensus       207 ~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs  269 (584)
T 3l6x_A          207 SVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLS  269 (584)
T ss_dssp             HHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhh
Confidence            999999999998875321  112222 12 456676666554  3444555555554554443

>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B

Probab=94.39  E-value=0.11  Score=44.45  Aligned_cols=81  Identities=14%  Similarity=0.161  Sum_probs=62.0

Q ss_pred             ChhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccC-CCHHHHHHHHHHHHHHHHHhh
Q 020587          196 SPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSD-QLPESREAARTLLLELQSVYE  274 (324)
Q Consensus       196 s~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D-~~pEvR~~AR~~l~~L~~~~~  274 (324)
                      .+...+..|..-++|+||.+...+..+|..|+++-|..-.....-..+++.+.+.+.. .+++||+-...++......|+
T Consensus        49 ~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~f~  128 (163)
T 1x5b_A           49 GAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEFQ  128 (163)
T ss_dssp             HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred             cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhc
Confidence            4445777788888999999999999999999999887633333445566666666655 678999999999887777776


Q ss_pred             hc
Q 020587          275 KS  276 (324)
Q Consensus       275 ~~  276 (324)
                      ..
T Consensus       129 ~~  130 (163)
T 1x5b_A          129 KD  130 (163)
T ss_dssp             TC
T ss_pred             CC
Confidence            44

>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2

Probab=94.12  E-value=0.31  Score=40.91  Aligned_cols=79  Identities=10%  Similarity=0.026  Sum_probs=64.1

Q ss_pred             hhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccC------CCHHHHHHHHHHHHHHH
Q 020587          197 PILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSD------QLPESREAARTLLLELQ  270 (324)
Q Consensus       197 ~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D------~~pEvR~~AR~~l~~L~  270 (324)
                      |...+..|..-++|+||.+...+..+|..|+++-|..--....-..+++.+.+.+.+      .+++||+-...++....
T Consensus        36 ~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~  115 (148)
T 1mhq_A           36 PTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWT  115 (148)
T ss_dssp             HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHH
Confidence            455777788888999999999999999999999887644445667888888888875      37899999988887777


Q ss_pred             HHhhh
Q 020587          271 SVYEK  275 (324)
Q Consensus       271 ~~~~~  275 (324)
                      ..|+.
T Consensus       116 ~~f~~  120 (148)
T 1mhq_A          116 VWFPE  120 (148)
T ss_dssp             HHCTT
T ss_pred             HHcCC
Confidence            77653

>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0

Probab=94.05  E-value=0.1  Score=43.39  Aligned_cols=80  Identities=15%  Similarity=0.202  Sum_probs=62.5

Q ss_pred             hhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhc
Q 020587          197 PILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSVYEKS  276 (324)
Q Consensus       197 ~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~~~  276 (324)
                      |...+..|..-++|+||.+...+..+|..|+++-|..--....-..+++.+.+.+...+++||+-...++......|+..
T Consensus        40 ~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f~~~  119 (140)
T 3ldz_A           40 PKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFKND  119 (140)
T ss_dssp             HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhCCC
Confidence            44477778888999999999999999999999988763333344556666666666788999999999998888877644

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=94.03  E-value=0.91  Score=48.63  Aligned_cols=138  Identities=9%  Similarity=0.041  Sum_probs=91.5

Q ss_pred             CCCHHHHHHHHHHHHHHHhHcHHHHH-HhhhhHHHHHHHHccCc----chHHHH-HHHHHHHHHHHHhhhhHHhhHHHHH
Q 020587           93 SKDWVVVCEALNNVRRLSIFHKEAML-DILGDVIPLVVKSLKNP----RSAVCK-TAIMTAADIFSAYNDRMIDLLDPLL  166 (324)
Q Consensus        93 s~dW~~r~eaL~~LRrLa~~h~~~l~-~~L~~iv~~l~~~vksL----RS~Vsk-~A~~tl~dLf~~L~~~m~~~~d~ll  166 (324)
                      +.+|..+.-+|-.+..++....+... ..+..++..+.....-.    ...+.+ .+|.+++.+...+... ..++..++
T Consensus       464 ~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~-~~~l~~vl  542 (1049)
T 3m1i_C          464 EWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAH-WNFLRTVI  542 (1049)
T ss_dssp             SCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHC-HHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhH-HHHHHHHH
Confidence            46999999999999988653322222 23566666655533221    123444 6889999888777654 46789999


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHHHHhhcChh----------h----hHHHHhhhccCCCHHHHHHHHHHHHhhccccc
Q 020587          167 VQLLLKSSQDKRFVCEAAEKALVAMTTWVSPI----------L----LLPKLQPYLKNRNPRIRAKASMCFSRSVPRLG  231 (324)
Q Consensus       167 ~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~----------~----ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g  231 (324)
                      +.|+....+.+.-|+..|..|+..+++.+...          .    ++..|......-...-+..+.+.+..++...+
T Consensus       543 ~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~  621 (1049)
T 3m1i_C          543 LKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEER  621 (1049)
T ss_dssp             HHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCC
Confidence            99999888888999999999999999987642          1    22223333333344445566666666666655

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=93.83  E-value=0.97  Score=46.40  Aligned_cols=152  Identities=16%  Similarity=0.065  Sum_probs=104.8

Q ss_pred             CCCCCHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHh
Q 020587           75 IDVEDIDTSVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAY  154 (324)
Q Consensus        75 ~pl~dpe~~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L  154 (324)
                      .+...|.+....++..|=+..|+.|-.|---||.+.+.|..-. +..           ...+.   --|+          
T Consensus       167 ~~~eWPfqfcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GA-GR~-----------~~~N~---DLAv----------  221 (800)
T 3oc3_A          167 RPIENVLDFFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGG-DIQ-----------IRVDS---KLFS----------  221 (800)
T ss_dssp             -CCCSGGGTTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC-----CC-----------CCCCT---THHH----------
T ss_pred             cCCCCHHHHHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCC-cee-----------ccccH---HHHH----------
Confidence            4456777766788888999999999999999999999886422 111           11111   1122          


Q ss_pred             hhhHHhhHHHHHHHHHHHhcC-----ChHHHHHHHHHHHHHHHhhcChh-hhHHHHhhhccCCCHHHHHHHHHHHHhhcc
Q 020587          155 NDRMIDLLDPLLVQLLLKSSQ-----DKRFVCEAAEKALVAMTTWVSPI-LLLPKLQPYLKNRNPRIRAKASMCFSRSVP  228 (324)
Q Consensus       155 ~~~m~~~~d~ll~~LL~Ka~~-----sk~FI~e~A~~AL~amv~~vs~~-~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~  228 (324)
                              ..++--.|.|.+|     .-.-|||.+..+|.++ .++++. +++..|...+.+...+||-....-|-.+- 
T Consensus       222 --------RLLCVLALDRFGDYVSDqVVAPVRETaAQtLGaL-~hLp~e~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~-  291 (800)
T 3oc3_A          222 --------KIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSRI-YPLIGPNDIIEQLVGFLDSGDWQVQFSGLIALGYLK-  291 (800)
T ss_dssp             --------HHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHHH-TTTSCSCCHHHHHTTGGGCSCHHHHHHHHHHHHHTG-
T ss_pred             --------HHHHHHHhccccccccCeeeeehHHHHHHHHHHH-HhCChhHHHHHHHHhhcCCCCeeehhhhHHHHHHHH-
Confidence                    1222233455543     2568999999999999 888665 35555667778889999987655555441 


Q ss_pred             cccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHH
Q 020587          229 RLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLL  267 (324)
Q Consensus       229 ~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~  267 (324)
                          + +.. .++.+++++..+|.|.+-|||..|-.++.
T Consensus       292 ----D-LL~-~Ld~Vv~aVL~GL~D~DDDVRAVAAetLi  324 (800)
T 3oc3_A          292 ----E-FVE-DKDGLCRKLVSLLSSPDEDIKLLSAELLC  324 (800)
T ss_dssp             ----G-GCC-CHHHHHHHHHHHTTCSSHHHHHHHHHHHT
T ss_pred             ----H-HHH-HHHHHHHHHHhhcCCcccHHHHHHHHHhh
Confidence                1 221 28999999999999999999999987663

>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*

Probab=93.78  E-value=0.17  Score=42.65  Aligned_cols=79  Identities=13%  Similarity=0.062  Sum_probs=64.2

Q ss_pred             hhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccC------CCHHHHHHHHHHHHHHH
Q 020587          197 PILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSD------QLPESREAARTLLLELQ  270 (324)
Q Consensus       197 ~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D------~~pEvR~~AR~~l~~L~  270 (324)
                      |...+..|..-++|+||.+.-.+..+|..|+++-|..-.....-..+++.+.+.+.+      .+++||+-...++....
T Consensus        46 pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~  125 (149)
T 3g2s_A           46 PPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWT  125 (149)
T ss_dssp             HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHH
Confidence            455777888888999999999999999999999888744444567777888888876      47899999999988777


Q ss_pred             HHhhh
Q 020587          271 SVYEK  275 (324)
Q Consensus       271 ~~~~~  275 (324)
                      ..|++
T Consensus       126 ~~f~~  130 (149)
T 3g2s_A          126 VGLPE  130 (149)
T ss_dssp             HHCTT
T ss_pred             HHhCC
Confidence            77753

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=93.55  E-value=0.78  Score=50.01  Aligned_cols=138  Identities=9%  Similarity=0.047  Sum_probs=98.6

Q ss_pred             CHHHHHHHHHHHHHHHhHc-HHHHHHhhhhHHHHHHHHccCcc-----hHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHH
Q 020587           95 DWVVVCEALNNVRRLSIFH-KEAMLDILGDVIPLVVKSLKNPR-----SAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQ  168 (324)
Q Consensus        95 dW~~r~eaL~~LRrLa~~h-~~~l~~~L~~iv~~l~~~vksLR-----S~Vsk~A~~tl~dLf~~L~~~m~~~~d~ll~~  168 (324)
                      +|.....++-.++.++..- ++.-...|.++++.++......|     --|+.+.|-++|...+.+..+ -.+++.++..
T Consensus       492 sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h-~~~L~~vl~~  570 (1073)
T 3gjx_A          492 SWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAH-WKFLKTVVNK  570 (1073)
T ss_dssp             CHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHC-HHHHHHHHHH
T ss_pred             CHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhC-HHHHHHHHHH
Confidence            6999999999999997543 34445678888887777665554     344444566888888888765 4589999999


Q ss_pred             HHHHhcCChHHHHHHHHHHHHHHHhhcChh----------hhHH-HH---hhhccCCCHHHHHHHHHHHHhhccccccc
Q 020587          169 LLLKSSQDKRFVCEAAEKALVAMTTWVSPI----------LLLP-KL---QPYLKNRNPRIRAKASMCFSRSVPRLGVE  233 (324)
Q Consensus       169 LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~----------~ll~-~L---~~~~~hKNp~VR~~aa~~L~~~v~~~g~~  233 (324)
                      |+..+.++++-|.+.|..|+..+++.|...          ..+. .+   .....+-.+.-.......+..++...+.+
T Consensus       571 L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~lyeav~~vi~~~p~~  649 (1073)
T 3gjx_A          571 LFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQTDQ  649 (1073)
T ss_dssp             HHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHHHHHHTTCCCH
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCc
Confidence            999999999999999999999999998753          1233 22   23333445555555566666666666554

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=93.12  E-value=5.4  Score=42.02  Aligned_cols=210  Identities=8%  Similarity=0.031  Sum_probs=132.6

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHHhHc--HHHHHHhhhhHHHHHHHHccCcchH---HHHHHHHHHHHHHHHhhhh
Q 020587           83 SVKTLVAGLDSKDWVVVCEALNNVRRLSIFH--KEAMLDILGDVIPLVVKSLKNPRSA---VCKTAIMTAADIFSAYNDR  157 (324)
Q Consensus        83 ~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h--~~~l~~~L~~iv~~l~~~vksLRS~---Vsk~A~~tl~dLf~~L~~~  157 (324)
                      .+..+...+++.+-..+..+...|..|+..-  ...+..  ...++.++..+.+--..   +-.+|+.+++.|...-.+.
T Consensus       458 vIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvq--qGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~  535 (778)
T 3opb_A          458 LISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQ--QGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPG  535 (778)
T ss_dssp             HHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHH--TTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHH
T ss_pred             CHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHH--CCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHH
Confidence            3455667777888888999999999887541  222221  24556677766655332   5568999888888554322


Q ss_pred             HH--h-hHHHHHHHHHHHhcC-Ch-H------------HHHHHHHHHHHHHHhhcCh------h------hhHHHHhhhc
Q 020587          158 MI--D-LLDPLLVQLLLKSSQ-DK-R------------FVCEAAEKALVAMTTWVSP------I------LLLPKLQPYL  208 (324)
Q Consensus       158 m~--~-~~d~ll~~LL~Ka~~-sk-~------------FI~e~A~~AL~amv~~vs~------~------~ll~~L~~~~  208 (324)
                      ..  . ..-..+++|+..... .. .            .-.-+|-.||.-++..-..      .      ..++.|...+
T Consensus       536 ~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL  615 (778)
T 3opb_A          536 LIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLM  615 (778)
T ss_dssp             HHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGG
T ss_pred             HHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHH
Confidence            21  1 112677888877652 11 1            1133566666666554311      1      2456777888


Q ss_pred             cCCCHHHHHHHHHHHHhhcccccccch-hhc---cHH---HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 020587          209 KNRNPRIRAKASMCFSRSVPRLGVEGI-KEY---GID---KLIQVAASQLSDQLPESREAARTLLLELQSVYEKSHDSAP  281 (324)
Q Consensus       209 ~hKNp~VR~~aa~~L~~~v~~~g~~~i-~~~---~~~---~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~~~a~~~~  281 (324)
                      .+-|..||+.++.++.+++..  +..+ ..+   +-+   .=++.+.+++...+.++|.+|-.++..+-..++..+..- 
T Consensus       616 ~s~n~~VrrAA~elI~NL~~~--~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~l-  692 (778)
T 3opb_A          616 LDENVPLQRSTLELISNMMSH--PLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKEL-  692 (778)
T ss_dssp             GCSSHHHHHHHHHHHHHHHTS--GGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHH-
T ss_pred             hCCCHHHHHHHHHHHHHHhCC--cHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHH-
Confidence            889999999999999999973  3332 121   212   237788889999999999999999988876666543200 


Q ss_pred             CCCCCCcchhHHHHHHHh
Q 020587          282 ATVSDSPEMDSWENFCQS  299 (324)
Q Consensus       282 ~~~~~~~~~~~w~~~~~~  299 (324)
                        -.....-+.|-..|+.
T Consensus       693 --l~~~~gi~~Ll~lL~~  708 (778)
T 3opb_A          693 --LTKKELIENAIQVFAD  708 (778)
T ss_dssp             --TTCHHHHHHHHHHHHH
T ss_pred             --HHccccHHHHHHHHhc
Confidence              0111245788889988

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=92.48  E-value=1.8  Score=44.42  Aligned_cols=78  Identities=9%  Similarity=0.041  Sum_probs=58.6

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhh-hhHHH-HHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHh
Q 020587           83 SVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDIL-GDVIP-LVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMID  160 (324)
Q Consensus        83 ~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L-~~iv~-~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~  160 (324)
                      .+..+++.|.|.|...|..|+..|..|+. .+....-.+ ..++. .+...+.|....|..+|.-++.-|+..-|.++-.
T Consensus        35 ~i~Pll~~L~S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~  113 (684)
T 4gmo_A           35 KILPVLKDLKSPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCV  113 (684)
T ss_dssp             TTHHHHHHHSSSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred             hHHHHHHHcCCCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHH
Confidence            34578889999999999999999999986 454333223 33554 4566789999999999999999888776655443


Q ss_pred             h
Q 020587          161 L  161 (324)
Q Consensus       161 ~  161 (324)
                      +
T Consensus       114 ~  114 (684)
T 4gmo_A          114 H  114 (684)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=92.36  E-value=5.6  Score=40.44  Aligned_cols=169  Identities=9%  Similarity=0.076  Sum_probs=106.8

Q ss_pred             CHHH-HHHHHHHHHHHHhHcHH---HHHHhhhhHHHHHHHHcc------CcchHHHHHHHHHHHHHHHHhhhhHH---hh
Q 020587           95 DWVV-VCEALNNVRRLSIFHKE---AMLDILGDVIPLVVKSLK------NPRSAVCKTAIMTAADIFSAYNDRMI---DL  161 (324)
Q Consensus        95 dW~~-r~eaL~~LRrLa~~h~~---~l~~~L~~iv~~l~~~vk------sLRS~Vsk~A~~tl~dLf~~L~~~m~---~~  161 (324)
                      +|.. +..|...||-|+..+++   .+. ..+.++..++..++      +....+..+|+-++.-|...+...+.   .+
T Consensus       204 ~d~~V~~nAa~~L~NLs~~~~~~R~~i~-~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~  282 (584)
T 3l6x_A          204 EWESVLTNTAGCLRNVSSERSEARRKLR-ECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERY  282 (584)
T ss_dssp             CCHHHHHHHHHHHHHHTSSCHHHHHHHH-HSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC-
T ss_pred             ccHHHHHHHHHHHHHHhcCCHHHHHHHH-HcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhh
Confidence            3544 55577888888776543   222 12334444444443      35667888888888777755433221   00


Q ss_pred             ------------------H-----HHHHHHHHHHhc-CChHHHHHHHHHHHHHHHhhc-----------ChhhhHHHHhh
Q 020587          162 ------------------L-----DPLLVQLLLKSS-QDKRFVCEAAEKALVAMTTWV-----------SPILLLPKLQP  206 (324)
Q Consensus       162 ------------------~-----d~ll~~LL~Ka~-~sk~FI~e~A~~AL~amv~~v-----------s~~~ll~~L~~  206 (324)
                                        +     ...++.|+..+. .++.-+.+.|..||..++..-           .....+|.|..
T Consensus       283 ~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~  362 (584)
T 3l6x_A          283 QEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIAD  362 (584)
T ss_dssp             -------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHH
T ss_pred             hhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHH
Confidence                              0     134566666663 346788999999998876432           22346788889


Q ss_pred             hccCCCHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccCC--------CHHHHHHHHHHHH
Q 020587          207 YLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQ--------LPESREAARTLLL  267 (324)
Q Consensus       207 ~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~--------~pEvR~~AR~~l~  267 (324)
                      .+.+.+..|+..++..|.++...-....+.   ....++.+..+|..+        +.+++..|-.++.
T Consensus       363 LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I---~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~  428 (584)
T 3l6x_A          363 LLTNEHERVVKAASGALRNLAVDARNKELI---GKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTIN  428 (584)
T ss_dssp             GGGCSCHHHHHHHHHHHHHHHTTCSCHHHH---HHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHH
T ss_pred             HHcCCCHHHHHHHHHHHHHHhCChhHHHHH---HhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHH
Confidence            999999999999999999988743332222   245667777788776        4677766655554

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=92.33  E-value=4.1  Score=43.76  Aligned_cols=180  Identities=12%  Similarity=0.115  Sum_probs=111.6

Q ss_pred             CCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHHHHh
Q 020587           94 KDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLLKS  173 (324)
Q Consensus        94 ~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d~ll~~LL~Ka  173 (324)
                      ++..-+-.+...++|+...-...+.+.+..++..++.   +....-....+..++.|...+|+++.+.++.++++|+.++
T Consensus       713 ~~~~irea~~~~~~r~i~~lg~~~~p~lp~~i~~ll~---~~~~~e~~~fL~l~~qli~~f~~~~~~~l~~ll~~l~~~i  789 (980)
T 3ibv_A          713 FNEDIRGAVRFTSGRIINVVGPDMLPKVPQLISILLN---SIDMNELVDVLSFISQLIHIYKDNMMEITNRMLPTLLMRI  789 (980)
T ss_dssp             CSHHHHHHHHHHHHHHTTTTHHHHTTTHHHHHHHHHH---HCCTTTHHHHHHHHHHHHHHTTTTSHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566666677777777665455566788888877774   3334445567888999999999999999999999999874


Q ss_pred             ----cC---------ChHHHHHHHHHHHHHHHhhc-Chh-----------hhHHHHhhhc-cCCCHHHHHHHHHHHHhhc
Q 020587          174 ----SQ---------DKRFVCEAAEKALVAMTTWV-SPI-----------LLLPKLQPYL-KNRNPRIRAKASMCFSRSV  227 (324)
Q Consensus       174 ----~~---------sk~FI~e~A~~AL~amv~~v-s~~-----------~ll~~L~~~~-~hKNp~VR~~aa~~L~~~v  227 (324)
                          .+         .+.+++.+--.-|..|+.+- +.-           .++..|..+. .+..+..++.+..+|.+++
T Consensus       790 f~~l~~~~~~td~~r~~~~l~r~~~~fl~~i~~~~~~~v~~s~~n~~~l~~~l~~l~~~a~~~~d~~~~K~a~~~l~~~v  869 (980)
T 3ibv_A          790 FSSLSAAPQGTDDAVKQNDLRKSYISFILQLLNKGFGSILFTEENQVYFDPLINSILHFANLVGEPATQKSSIALVSKMV  869 (980)
T ss_dssp             HHHTTC----CCHHHHHHHHHHHHHHHHHHHHHTTCTGGGGSHHHHTTHHHHHHHHHHHC-----CHHHHHHHHHHHHHH
T ss_pred             HHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCcchHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHH
Confidence                22         12334444444566666632 221           2344455554 4688999999999999999


Q ss_pred             ccccccc----hhhccHHHHHHHHHHhccCCC-----HHHHHHHHHHHHHHHHHhhhcC
Q 020587          228 PRLGVEG----IKEYGIDKLIQVAASQLSDQL-----PESREAARTLLLELQSVYEKSH  277 (324)
Q Consensus       228 ~~~g~~~----i~~~~~~~ll~~l~~~L~D~~-----pEvR~~AR~~l~~L~~~~~~~a  277 (324)
                      +.||..+    ...|-.+ +++.+-....+++     ...|...-.+...++.+|.+.+
T Consensus       870 ~~~~~~~~~~gf~~f~~~-~~~~~f~~p~~~~f~~~Daq~~~~~~e~~~~~k~~~~~~g  927 (980)
T 3ibv_A          870 SLWGGKDGIAGFENFTLS-LTPLCFEMPVNPNFNTRDGQSLVVLGELAGLQKIILEKLG  927 (980)
T ss_dssp             HC-------CCHHHHHHH-HHHHHHHGGGC----------CHHHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCCcchHHHHHHHH-HHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHHHHHHhcC
Confidence            9997543    3334466 7887766665554     4455555566666666666554

>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*

Probab=91.93  E-value=0.37  Score=41.40  Aligned_cols=79  Identities=11%  Similarity=0.074  Sum_probs=62.3

Q ss_pred             ChhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccC------CCHHHHHHHHHHHHHH
Q 020587          196 SPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSD------QLPESREAARTLLLEL  269 (324)
Q Consensus       196 s~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D------~~pEvR~~AR~~l~~L  269 (324)
                      .+...+..|..-++|+|+.+...+..+|..|+++-|..--....-..+++.+.+.+..      .+++||+-...++...
T Consensus        47 ~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W  126 (171)
T 1juq_A           47 GPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSW  126 (171)
T ss_dssp             HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHH
Confidence            3444777888889999999999999999999999887633344566777777777763      4689999999998877


Q ss_pred             HHHhh
Q 020587          270 QSVYE  274 (324)
Q Consensus       270 ~~~~~  274 (324)
                      ...|+
T Consensus       127 ~~~f~  131 (171)
T 1juq_A          127 TMALP  131 (171)
T ss_dssp             HHHCT
T ss_pred             HHHcC
Confidence            77775

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=91.48  E-value=4.5  Score=36.65  Aligned_cols=103  Identities=17%  Similarity=0.092  Sum_probs=80.1

Q ss_pred             HHHHHHHHHH-HhcCChHHHHHHHHHHHHHHHhhcChhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccH
Q 020587          162 LDPLLVQLLL-KSSQDKRFVCEAAEKALVAMTTWVSPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGI  240 (324)
Q Consensus       162 ~d~ll~~LL~-Ka~~sk~FI~e~A~~AL~amv~~vs~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~  240 (324)
                      ...+++.+.. -+.+.+=-|++-+..++...+....|.++++.+..-+++.|+-||+.+...+-.    |+...-.....
T Consensus       101 ~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~~l~~~~~W~~d~n~~VRR~Ase~~rp----W~~~~~~k~dp  176 (240)
T 3l9t_A          101 DKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKKALPIIDEWLKSSNLHTRRAATEGLRI----WTNRPYFKENP  176 (240)
T ss_dssp             SHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTTTHHHHHHHHHCSSHHHHHHHHHHTCS----GGGSTTTTTCH
T ss_pred             cHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCHHHHHHHHHhhHH----HhccchhhcCH
Confidence            3556665555 345667779999999999999888888899999999999999999999887653    33221123468


Q ss_pred             HHHHHHHHHhccCCCHHHHHHHHHHHHH
Q 020587          241 DKLIQVAASQLSDQLPESREAARTLLLE  268 (324)
Q Consensus       241 ~~ll~~l~~~L~D~~pEvR~~AR~~l~~  268 (324)
                      +.+++.+..+..|.+.-||.+-=..|.-
T Consensus       177 ~~ll~iL~~L~~D~s~yVrKSVan~LrD  204 (240)
T 3l9t_A          177 NEAIRRIADLKEDVSEYVRKSVGNALRD  204 (240)
T ss_dssp             HHHHHHHHTTTTCSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence            9999999999999999999887666643

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=90.23  E-value=7.5  Score=34.66  Aligned_cols=104  Identities=13%  Similarity=-0.011  Sum_probs=72.4

Q ss_pred             HHHHHHHHccCcch--HHHHHHHHHHHHHHHHhhhhHHhhH-HHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhh-
Q 020587          124 VIPLVVKSLKNPRS--AVCKTAIMTAADIFSAYNDRMIDLL-DPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPIL-  199 (324)
Q Consensus       124 iv~~l~~~vksLRS--~Vsk~A~~tl~dLf~~L~~~m~~~~-d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~-  199 (324)
                      .++.++..+.+...  .+-.+|+.++.-|+..-...-...+ ...+|.|+......+.-+++.|..||..+....+..+ 
T Consensus         9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~   88 (233)
T 3tt9_A            9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKL   88 (233)
T ss_dssp             CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence            35667777777766  8888888888877754321111111 1356889888887889999999999998876433332 


Q ss_pred             ------hHHHHhhhcc-CCCHHHHHHHHHHHHhhc
Q 020587          200 ------LLPKLQPYLK-NRNPRIRAKASMCFSRSV  227 (324)
Q Consensus       200 ------ll~~L~~~~~-hKNp~VR~~aa~~L~~~v  227 (324)
                            .+|.|...++ +.+..++..++..|..+-
T Consensus        89 ~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS  123 (233)
T 3tt9_A           89 EVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLS  123 (233)
T ss_dssp             HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence                  4566777776 578999999886666554

>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}

Probab=90.05  E-value=9  Score=34.82  Aligned_cols=137  Identities=16%  Similarity=0.175  Sum_probs=87.7

Q ss_pred             HHHHHHhhcCC-CCHHHHHHHHHHHHHHHhHc-HHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHh
Q 020587           83 SVKTLVAGLDS-KDWVVVCEALNNVRRLSIFH-KEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMID  160 (324)
Q Consensus        83 ~L~~~l~~L~s-~dW~~r~eaL~~LRrLa~~h-~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~  160 (324)
                      .+-.++..... .| ..+++.|..+|.|+.+. |.+    +.++++.++....+.+..|-|-....+.+.|..    -..
T Consensus        16 ~v~~lln~A~~~~~-~~kl~~L~qa~el~~~~dp~l----l~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~----k~~   86 (257)
T 3gs3_A           16 KVVDWCNELVIASP-STKCELLAKVQETVLGSCAEL----AEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKV----KVE   86 (257)
T ss_dssp             HHHHHHHHHTTCCH-HHHHHHHHHHHHHHTTTTGGG----HHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHH----CGG
T ss_pred             HHHHHHHHhhhcCc-HHHHHHHHHHHHHHHccCHhH----HHHHHHHHHHhccCChHHHHHHHHHHHHHHHHH----HHH
Confidence            34455555543 56 79999999999998763 543    455555566667778888888888777777732    234


Q ss_pred             hHHHHHHHHHHHhcCChHHHHHHHHHH--------HHHHHhhcCh----hhhHH-------HHhhhccCCCHHHHHHHHH
Q 020587          161 LLDPLLVQLLLKSSQDKRFVCEAAEKA--------LVAMTTWVSP----ILLLP-------KLQPYLKNRNPRIRAKASM  221 (324)
Q Consensus       161 ~~d~ll~~LL~Ka~~sk~FI~e~A~~A--------L~amv~~vs~----~~ll~-------~L~~~~~hKNp~VR~~aa~  221 (324)
                      ++..+++.|.....+....|...+-.|        +..++.+-..    ..+..       .|.....+.|.-||..+.+
T Consensus        87 l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iK  166 (257)
T 3gs3_A           87 LLPHVINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIK  166 (257)
T ss_dssp             GHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHH
Confidence            566777777666666544443333333        3344443221    22222       3455577899999999999


Q ss_pred             HHHhhcc
Q 020587          222 CFSRSVP  228 (324)
Q Consensus       222 ~L~~~v~  228 (324)
                      ++..++-
T Consensus       167 F~e~vIl  173 (257)
T 3gs3_A          167 FLEGVVV  173 (257)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999884

>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*

Probab=89.96  E-value=1.1  Score=39.98  Aligned_cols=83  Identities=11%  Similarity=0.111  Sum_probs=61.9

Q ss_pred             cChhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccC-CCHHHHHHHHHHHHHHHHHh
Q 020587          195 VSPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSD-QLPESREAARTLLLELQSVY  273 (324)
Q Consensus       195 vs~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D-~~pEvR~~AR~~l~~L~~~~  273 (324)
                      ..+...+..|..-++|+||.+...+..+|..|+++-|..-.....-..+++.+.+++.. .+++||+-...++......|
T Consensus        41 ~~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f  120 (226)
T 3zyq_A           41 TQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAF  120 (226)
T ss_dssp             SCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHT
T ss_pred             ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Confidence            45666888899889999999999999999999999887633333334444445444433 46899999999998888777


Q ss_pred             hhcC
Q 020587          274 EKSH  277 (324)
Q Consensus       274 ~~~a  277 (324)
                      ....
T Consensus       121 ~~~~  124 (226)
T 3zyq_A          121 RNEP  124 (226)
T ss_dssp             TTCG
T ss_pred             CCCc
Confidence            6543

>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1

Probab=89.07  E-value=0.95  Score=40.06  Aligned_cols=81  Identities=14%  Similarity=0.140  Sum_probs=60.7

Q ss_pred             ChhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHHHHhh
Q 020587          196 SPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLS-DQLPESREAARTLLLELQSVYE  274 (324)
Q Consensus       196 s~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~-D~~pEvR~~AR~~l~~L~~~~~  274 (324)
                      .+...+..|..-++|+||.+...+..+|..|+++-|..--....-..+++.+.+++. ..+++||+....++......|.
T Consensus        39 ~~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~  118 (220)
T 1dvp_A           39 TPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAFR  118 (220)
T ss_dssp             CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhc
Confidence            556677888888899999999999999999999987753233333445555555554 4578999999988888777776


Q ss_pred             hc
Q 020587          275 KS  276 (324)
Q Consensus       275 ~~  276 (324)
                      ..
T Consensus       119 ~~  120 (220)
T 1dvp_A          119 SS  120 (220)
T ss_dssp             TC
T ss_pred             cc
Confidence            43

>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2

Probab=88.58  E-value=1.2  Score=37.43  Aligned_cols=80  Identities=10%  Similarity=0.060  Sum_probs=59.6

Q ss_pred             ChhhhHHHHhhhcc-CCCHHHHHHHHHHHHhhcccccccchhhccHHHHHHH-HHHhcc---CCCHHHHHHHHHHHHHHH
Q 020587          196 SPILLLPKLQPYLK-NRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQV-AASQLS---DQLPESREAARTLLLELQ  270 (324)
Q Consensus       196 s~~~ll~~L~~~~~-hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~-l~~~L~---D~~pEvR~~AR~~l~~L~  270 (324)
                      .+...+..|..-++ ++|+.+...+..+|..|+++-|..--....-..+++. +.+.+.   +...+||+-...++....
T Consensus        50 ~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~  129 (157)
T 1elk_A           50 GPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWA  129 (157)
T ss_dssp             HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHH
Confidence            44557777887887 5999999999999999999988764333445566665 666664   345689999888888777


Q ss_pred             HHhhh
Q 020587          271 SVYEK  275 (324)
Q Consensus       271 ~~~~~  275 (324)
                      ..|+.
T Consensus       130 ~~f~~  134 (157)
T 1elk_A          130 DAFRS  134 (157)
T ss_dssp             HHHTT
T ss_pred             HHcCC
Confidence            77753

>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}

Probab=86.51  E-value=19  Score=32.70  Aligned_cols=128  Identities=10%  Similarity=0.033  Sum_probs=76.6

Q ss_pred             HHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHhhcCh---hhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhc
Q 020587          163 DPLLVQLLLKSSQ-DKRFVCEAAEKALVAMTTWVSP---ILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEY  238 (324)
Q Consensus       163 d~ll~~LL~Ka~~-sk~FI~e~A~~AL~amv~~vs~---~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~  238 (324)
                      ..-+-.||+.+.. ++.--.+.-..+-+.++. -.|   +.+++-+.+.....+..||+..+.++...+..-      ..
T Consensus        14 ~~~v~~lln~A~~~~~~~kl~~L~qa~el~~~-~dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k------~~   86 (257)
T 3gs3_A           14 RAKVVDWCNELVIASPSTKCELLAKVQETVLG-SCAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVK------VE   86 (257)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTT-TTGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHC------GG
T ss_pred             HHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHc-cCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHH------HH
Confidence            3455667777765 332222222222222232 233   234555666666799999999999998887441      12


Q ss_pred             cHHHHHHHHHHhccCCCHHHHHHHHHHHH-HHHHHhhhcCCCCCCCCCCCcchhHHHHHHHhc
Q 020587          239 GIDKLIQVAASQLSDQLPESREAARTLLL-ELQSVYEKSHDSAPATVSDSPEMDSWENFCQSK  300 (324)
Q Consensus       239 ~~~~ll~~l~~~L~D~~pEvR~~AR~~l~-~L~~~~~~~a~~~~~~~~~~~~~~~w~~~~~~~  300 (324)
                      -...+++.+..+++|.++.|-+.+=.+.. .+..+|..-+..+   ..++...+.|+.+++-|
T Consensus        87 l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~~i~~~~---~~~~~~~~~W~~m~~lK  146 (257)
T 3gs3_A           87 LLPHVINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQYLCSLM---EPGDSAEQAWNILSLIK  146 (257)
T ss_dssp             GHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHTTSS---SCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCC---CCcchHHHHHHHHHHHH
Confidence            37889999999999999887655555444 3334444444211   12233478999988754

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=86.23  E-value=23  Score=33.57  Aligned_cols=138  Identities=15%  Similarity=0.157  Sum_probs=92.7

Q ss_pred             HHHhhcCCCCHHHHHHHHHHHHHHHhHcH----HHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhh
Q 020587           86 TLVAGLDSKDWVVVCEALNNVRRLSIFHK----EAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDL  161 (324)
Q Consensus        86 ~~l~~L~s~dW~~r~eaL~~LRrLa~~h~----~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~  161 (324)
                      .+|+.+...+.+--.+|..+++.|...|+    +++..++..+....-+.+.+-+=..-|.++..+|+|...=       
T Consensus       168 ~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLgelLldr-------  240 (341)
T 1upk_A          168 DFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDR-------  240 (341)
T ss_dssp             HHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHSG-------
T ss_pred             HHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhCc-------
Confidence            56667778889999999999999988885    5566678888888889999999999999999999885431       


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhhhHHHHhhhccCCCHHHHHHHHHHHHhhccccc-c---cchhh
Q 020587          162 LDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLG-V---EGIKE  237 (324)
Q Consensus       162 ~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g-~---~~i~~  237 (324)
                                 .   |          -..|..+++...-|..+-..+++++..|+-.+.-.+--.|..=. +   ..+..
T Consensus       241 -----------~---N----------~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~  296 (341)
T 1upk_A          241 -----------H---N----------FTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILL  296 (341)
T ss_dssp             -----------G---G----------HHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHH
T ss_pred             -----------h---H----------HHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCChHHHHHHH
Confidence                       1   0          12355555555555555555555555555554433333332200 0   11223


Q ss_pred             ccHHHHHHHHHHhccCC
Q 020587          238 YGIDKLIQVAASQLSDQ  254 (324)
Q Consensus       238 ~~~~~ll~~l~~~L~D~  254 (324)
                      ...++|+..+..|..|.
T Consensus       297 ~Nr~kLl~fl~~f~~d~  313 (341)
T 1upk_A          297 KNQAKLIEFLSKFQNDR  313 (341)
T ss_dssp             HTHHHHHHHHHHTTTTC
T ss_pred             HHHHHHHHHHHhCCCCC
Confidence            35888888888888888

>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*

Probab=85.79  E-value=16  Score=35.30  Aligned_cols=124  Identities=18%  Similarity=0.091  Sum_probs=80.2

Q ss_pred             HHHHHHHHHHHHHHhH-cHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHHHHhcC
Q 020587           97 VVVCEALNNVRRLSIF-HKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLLKSSQ  175 (324)
Q Consensus        97 ~~r~eaL~~LRrLa~~-h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d~ll~~LL~Ka~~  175 (324)
                      ..+++.|..++.|+.+ +|.    .|.++++.++....+....|=|-....+++.|..    -..++..+++.|...+.+
T Consensus        40 ~~Kl~~L~q~~EL~l~~dps----Ll~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~----~~el~~~~l~~L~~LL~d  111 (386)
T 3o2t_A           40 DSKITVLKQVQELIINKDPT----LLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKR----DIELLLKLIANLNMLLRD  111 (386)
T ss_dssp             THHHHHHHHHHHHHHTTCGG----GGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH----CGGGHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHhccCHH----HHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHcC
Confidence            4799999999998764 464    4566777777777788888888888888888853    122345555555555555


Q ss_pred             ChHHHHHHHHHH--------HHHHHhhcCh----hhhHH-------HHhhhccCCCHHHHHHHHHHHHhhcc
Q 020587          176 DKRFVCEAAEKA--------LVAMTTWVSP----ILLLP-------KLQPYLKNRNPRIRAKASMCFSRSVP  228 (324)
Q Consensus       176 sk~FI~e~A~~A--------L~amv~~vs~----~~ll~-------~L~~~~~hKNp~VR~~aa~~L~~~v~  228 (324)
                      ....|...+-.|        +..++.+-..    ..+..       .|.....+.|.-||..+.+|+..+|-
T Consensus       112 ~d~~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl  183 (386)
T 3o2t_A          112 ENVNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIV  183 (386)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHH
Confidence            433333333332        3333333221    12222       34555678999999999999999884

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=85.44  E-value=17  Score=32.77  Aligned_cols=129  Identities=9%  Similarity=-0.010  Sum_probs=85.4

Q ss_pred             hhHHHHHHH-HccCcchHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHh----hcC
Q 020587          122 GDVIPLVVK-SLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTT----WVS  196 (324)
Q Consensus       122 ~~iv~~l~~-~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~----~vs  196 (324)
                      .+++..+.. ...+--=.|.-.+...+++++...+.      +.+++.+..=+.+.+-.||-.|...+.-.+.    ...
T Consensus       102 ~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~p------e~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~d  175 (240)
T 3l9t_A          102 KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEY------KKALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKEN  175 (240)
T ss_dssp             HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCT------TTTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTC
T ss_pred             HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCH------HHHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcC
Confidence            334444444 33344455666666666666653322      2356677777889999999998888654333    367


Q ss_pred             hhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHH
Q 020587          197 PILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLL  266 (324)
Q Consensus       197 ~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l  266 (324)
                      |..+++.|.....+.+--||..++-+|..+-+..         .+.+...+..-.. .+++++..-|.+.
T Consensus       176 p~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~---------Pd~V~~~~~~w~~-~~~~~~~i~k~A~  235 (240)
T 3l9t_A          176 PNEAIRRIADLKEDVSEYVRKSVGNALRDISKKF---------PDLVKIELKNWKL-ESKEINQVYKLAS  235 (240)
T ss_dssp             HHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTC---------HHHHHHHHHTCCC-CSHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhC---------HHHHHHHHHHhhc-cCHhHHHHHHHHH
Confidence            7889999999999999999999999988765532         3444444444332 3678777777664

>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6

Probab=85.43  E-value=0.5  Score=51.12  Aligned_cols=124  Identities=10%  Similarity=-0.005  Sum_probs=80.5

Q ss_pred             HHHHHHhhhh----HHhhHHH-HHHHHHHHhcCChH-HHHHH-HHHHHHHHHhhcChhhhHH----HHhhhcc-CCCHHH
Q 020587          148 ADIFSAYNDR----MIDLLDP-LLVQLLLKSSQDKR-FVCEA-AEKALVAMTTWVSPILLLP----KLQPYLK-NRNPRI  215 (324)
Q Consensus       148 ~dLf~~L~~~----m~~~~d~-ll~~LL~Ka~~sk~-FI~e~-A~~AL~amv~~vs~~~ll~----~L~~~~~-hKNp~V  215 (324)
                      .-|...++..    +.+++.. ++|.|++....+.. -+... +..++..|.+..-+...++    .|....+ +.|. +
T Consensus       739 ~wl~~~l~~~~~~~l~~~~~~~llP~ll~l~~~~d~~eL~~~~a~~~l~~ls~~~~~~~~~~~~l~~l~~~~~~s~sW-~  817 (997)
T 1vsy_5          739 YWIKEMARGPNKVLLVPYLVDYVLPFLIGLVKHKDVCALASLDPVRLYAGLGYMPIRKNHVAAIVDYVCSSNVALSSN-Q  817 (997)
T ss_dssp             HHHHHHSSGGGHHHHHHHHTTTTTTTTCTTSSCSHHHHHTTCCSHHHHHHTSSSCCCHHHHHHHHHHSSCTTTTSCSS-S
T ss_pred             HHHHHHhcCCCccchhhhhHHHHHHHHHHHhhcCcHHHHHhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCcH-H
Confidence            3455555544    6677766 77777766654433 45555 6666777665544544444    4445455 5788 9


Q ss_pred             HHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccCCC-HHHHHHHHHHHHHHHHHh
Q 020587          216 RAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQL-PESREAARTLLLELQSVY  273 (324)
Q Consensus       216 R~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~-pEvR~~AR~~l~~L~~~~  273 (324)
                      |..+..++-..+-+.-- .+.......+.+.+..+|.|.. .|||+.|..+|..|....
T Consensus       818 R~~~L~~lq~~~f~n~f-~l~~~~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~  875 (997)
T 1vsy_5          818 TKLQLAFIQHFLSAELL-QLTEEEKNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNW  875 (997)
T ss_dssp             HHHHHHHHHHHHHHHTT-TSCTTHHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHHHH-HcCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcC
Confidence            99888776544443110 1112246789999999999999 999999999998775554

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=84.27  E-value=6.3  Score=42.63  Aligned_cols=79  Identities=11%  Similarity=0.053  Sum_probs=63.8

Q ss_pred             hhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhH--------HhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 020587          121 LGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRM--------IDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMT  192 (324)
Q Consensus       121 L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m--------~~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv  192 (324)
                      |+.++..+...+.+....|+..||.++..|++..+..+        .||++.++..+..-+..-..--...+-.|+..|+
T Consensus       538 L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi  617 (1023)
T 4hat_C          538 LRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIII  617 (1023)
T ss_dssp             HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            55666777888877777899999999999999999888        4799999988887765444445578888999999


Q ss_pred             hhcChhh
Q 020587          193 TWVSPIL  199 (324)
Q Consensus       193 ~~vs~~~  199 (324)
                      ++.++..
T Consensus       618 ~~~~~~~  624 (1023)
T 4hat_C          618 SEERSVA  624 (1023)
T ss_dssp             TTCCSHH
T ss_pred             HhCCCHh
Confidence            9987543

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=81.94  E-value=44  Score=33.34  Aligned_cols=164  Identities=12%  Similarity=0.060  Sum_probs=100.5

Q ss_pred             HHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHh
Q 020587           81 DTSVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMID  160 (324)
Q Consensus        81 e~~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~  160 (324)
                      +.....++.+.+... +.+.-|-+.|-+..++.|++-.    +.+.+++..+.+--.+|=++|+.-+-.+++.      .
T Consensus        28 ~~~y~~Il~~~kg~~-k~K~LaaQ~I~kffk~FP~l~~----~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~------~   96 (507)
T 3u0r_A           28 KDAYQVILDGVKGGT-KEKRLAAQFIPKFFKHFPELAD----SAINAQLDLCEDEDVSIRRQAIKELPQFATG------E   96 (507)
T ss_dssp             HHHHHHHHHGGGSCH-HHHHHHHHHHHHHGGGCGGGHH----HHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT------T
T ss_pred             HHHHHHHHHhcCCCH-HHHHHHHHHHHHHHhhChhhHH----HHHHHHHHHHhcccHHHHHHHHHhhHHHhhh------h
Confidence            345667777665543 3344456667777677776443    3455667778887888878887666555543      4


Q ss_pred             hHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccH
Q 020587          161 LLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGI  240 (324)
Q Consensus       161 ~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~  240 (324)
                      ++..+.-.|......+-..-.+....+|..+... .|...+..|...+..-...+|.++..+|..-+..++.+-+..-.-
T Consensus        97 ~i~kiaDvL~QlLqtdd~~E~~~V~~sL~sllk~-Dpk~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E  175 (507)
T 3u0r_A           97 NLPRVADILTQLLQTDDSAEFNLVNNALLSIFKM-DAKGTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVE  175 (507)
T ss_dssp             CHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTSCHHHH
T ss_pred             hhhhHHHHHHHHHhccchHHHHHHHHHHHHHHhc-ChHHHHHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhccHHHH
Confidence            4555555555555444555667777777766553 344444433333322368999999999988888877764422224


Q ss_pred             HHHHHHHHHhccCCCH
Q 020587          241 DKLIQVAASQLSDQLP  256 (324)
Q Consensus       241 ~~ll~~l~~~L~D~~p  256 (324)
                      +.+...+.+.|.|=+.
T Consensus       176 ~~i~~~ikK~L~DVT~  191 (507)
T 3u0r_A          176 ELILTESKKVLEDVTG  191 (507)
T ss_dssp             HHHHHHHHHHTTSCCH
T ss_pred             HHHHHHHHHHhccccH
Confidence            4556666777766654

>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X

Probab=81.06  E-value=6.9  Score=32.35  Aligned_cols=89  Identities=8%  Similarity=0.024  Sum_probs=55.4

Q ss_pred             CChHHHHHHHHHHHHHHHhhcChhh-hHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhc--cHHHHHHHHHHhc
Q 020587          175 QDKRFVCEAAEKALVAMTTWVSPIL-LLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEY--GIDKLIQVAASQL  251 (324)
Q Consensus       175 ~sk~FI~e~A~~AL~amv~~vs~~~-ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~--~~~~ll~~l~~~L  251 (324)
                      +++.-|..-..-|+    .|....+ ++..+...+++-+|.-+-....+++.++++.|.+-...|  .+..++..+.   
T Consensus        22 nSk~~I~~LT~~a~----~~~~~a~~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~f~~~~---   94 (144)
T 1sz9_A           22 NSRPIITTLTKLAE----ENISCAQYFVDAIESRIEKCMPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTY---   94 (144)
T ss_dssp             CCHHHHHHHHHHHH----HTGGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHHHHHHH---
T ss_pred             ccHhHHHHHHHHHH----HHHHHHHHHHHHHHHHhccCCHhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH---
Confidence            45555655443333    3454444 667788888877888888888999999998887633223  2333333333   


Q ss_pred             cCCCHHHHHHHHHHHHHHH
Q 020587          252 SDQLPESREAARTLLLELQ  270 (324)
Q Consensus       252 ~D~~pEvR~~AR~~l~~L~  270 (324)
                      ...++++|..-.+++..-.
T Consensus        95 ~~~d~~~r~k~~rL~~~W~  113 (144)
T 1sz9_A           95 LLVDNTTRTKLINMFKLWL  113 (144)
T ss_dssp             HTSCHHHHHHHHHHHHHHT
T ss_pred             HhCCHHHHHHHHHHHHHHh
Confidence            3356888877777764433

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=80.15  E-value=17  Score=37.53  Aligned_cols=168  Identities=14%  Similarity=0.138  Sum_probs=113.9

Q ss_pred             CHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHHHhHcHHHHHH-hhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhh
Q 020587           79 DIDTSVKTLVAGLD-SKDWVVVCEALNNVRRLSIFHKEAMLD-ILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYND  156 (324)
Q Consensus        79 dpe~~L~~~l~~L~-s~dW~~r~eaL~~LRrLa~~h~~~l~~-~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~  156 (324)
                      .+.+.+..+.+.|+ +.--++|.+|+..||.+++.++..+.. -|+.++..+.+-  .--..++|.++.|+.-++..-..
T Consensus        18 s~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~~~Vg~~~l~~li~~L~~d--~~D~e~v~~~LetL~~l~~~~~~   95 (651)
T 3grl_A           18 TEAETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYRLEVGIQAMEHLIHVLQTD--RSDSEIIGYALDTLYNIISNDEE   95 (651)
T ss_dssp             CHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTTTHHHHHTHHHHHHHHHSC--TTCHHHHHHHHHHHHHHHCCC--
T ss_pred             ChhhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHhcc--cccHHHHHHHHHHHHHHhCCCCc
Confidence            66778888999886 457889999999999999988766543 255444433332  13457788888888776653221


Q ss_pred             h------------H-HhhHH------HHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcCh--hh-------hHHHHhhhc
Q 020587          157 R------------M-IDLLD------PLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSP--IL-------LLPKLQPYL  208 (324)
Q Consensus       157 ~------------m-~~~~d------~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~--~~-------ll~~L~~~~  208 (324)
                      .            + ..+.|      .-++.|+.......-.+|-.+-..|..++.+-+.  ++       -++.|...+
T Consensus        96 ~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL  175 (651)
T 3grl_A           96 EEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLL  175 (651)
T ss_dssp             ------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGG
T ss_pred             ccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHH
Confidence            0            0 11222      3477788888877888999999999998877544  22       344677888


Q ss_pred             cCCCHHHHHHHHHHHHhhcccccc-cchhhc--cHHHHHHHHH
Q 020587          209 KNRNPRIRAKASMCFSRSVPRLGV-EGIKEY--GIDKLIQVAA  248 (324)
Q Consensus       209 ~hKNp~VR~~aa~~L~~~v~~~g~-~~i~~~--~~~~ll~~l~  248 (324)
                      ++.+-.||..+..+|..+...-.. ..+..|  +.++++..+.
T Consensus       176 ~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~  218 (651)
T 3grl_A          176 ADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIIT  218 (651)
T ss_dssp             GCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred             hCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHH
Confidence            889999999999999988884311 122223  4666666664

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=80.08  E-value=1.7  Score=44.62  Aligned_cols=72  Identities=24%  Similarity=0.209  Sum_probs=52.8

Q ss_pred             hhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHH-HHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Q 020587          198 ILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGID-KLIQVAASQLSDQLPESREAARTLLLELQSV  272 (324)
Q Consensus       198 ~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~-~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~  272 (324)
                      .+++|.|.. +++-++..|..++..|..+++.  ++.......+ .+...+..+|.|.+.+||..|-.+|..|...
T Consensus        34 ~~i~Pll~~-L~S~~~~~r~~A~~al~~l~~~--~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~  106 (684)
T 4gmo_A           34 DKILPVLKD-LKSPDAKSRTTAAGAIANIVQD--AKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQE  106 (684)
T ss_dssp             HTTHHHHHH-HSSSCCSHHHHHHHHHHHHTTS--HHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHH-cCCCCHHHHHHHHHHHHHHHcC--cHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence            457777654 7889999999999999999963  3311112223 3445678899999999999999998766543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	324
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	2e-07
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	1e-04
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	0.002
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	8e-05
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	0.002

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.5 bits (119), Expect = 2e-07
 Identities = 29/192 (15%), Positives = 59/192 (30%), Gaps = 10/192 (5%)

Query: 75   IDVEDIDTSVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKN 134
            ID+         ++    S    V   A   +  +S+ +         + +P V++ + +
Sbjct: 846  IDLSGQLELKSVILEAFSSPSEEVKSAASYALGSISVGNLP-------EYLPFVLQEITS 898

Query: 135  PRSAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTW 194
                           I SA    +   ++ +   LL      +        + L  +T  
Sbjct: 899  QPKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTL- 957

Query: 195  VSPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQ 254
            + P  LLP+L+ YL + +   R+        ++     + I    +   I      L D 
Sbjct: 958  IDPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHP-QPIDPL-LKNCIGDFLKTLEDP 1015

Query: 255  LPESREAARTLL 266
                R  A    
Sbjct: 1016 DLNVRRVALVTF 1027

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (95), Expect = 1e-04
 Identities = 16/131 (12%), Positives = 37/131 (28%), Gaps = 8/131 (6%)

Query: 80   IDTSVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAV 139
            ++     L+   +  +          + +L++   E        ++P +   L +  S  
Sbjct: 926  VENIWALLLKHCECAEEGTRNVVAECLGKLTLIDPE-------TLLPRLKGYLISGSSYA 978

Query: 140  CKTAIMTAADIFSAYNDRMIDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPIL 199
              + +       S +   +  LL   +   L         V   A     +      P L
Sbjct: 979  RSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAH-NKPSL 1037

Query: 200  LLPKLQPYLKN 210
            +   L   L +
Sbjct: 1038 IRDLLDTVLPH 1048

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (86), Expect = 0.002
 Identities = 18/151 (11%), Positives = 50/151 (33%), Gaps = 7/151 (4%)

Query: 77   VEDIDTSVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPR 136
            V ++   +  ++  + S+         +    +S      +   + ++  L++K  +   
Sbjct: 882  VGNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAE 941

Query: 137  SAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLLKSSQDKR-FVCEAAEKALVAMTTWV 195
                         +     + ++    P L   L+  S   R  V  A +  +      +
Sbjct: 942  EGTRNVVAECLGKLTLIDPETLL----PRLKGYLISGSSYARSSVVTAVKFTISDHPQPI 997

Query: 196  SPIL--LLPKLQPYLKNRNPRIRAKASMCFS 224
             P+L   +      L++ +  +R  A + F+
Sbjct: 998  DPLLKNCIGDFLKTLEDPDLNVRRVALVTFN 1028

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.7 bits (96), Expect = 8e-05
 Identities = 28/147 (19%), Positives = 47/147 (31%), Gaps = 13/147 (8%)

Query: 125 IPLVVKSLKNPRSAVCKTAIMTAADIFSAY-NDRMIDLLDPLLVQLLLKSSQDKRFVCEA 183
           I +++  L+N    +   +I   + I  A   +R    L P L   +     D+  V  A
Sbjct: 12  IAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTI----YDEDEVLLA 67

Query: 184 AEKALVAMTTWVSPI----LLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYG 239
             + L   TT V        LLP L+         +R KA               ++ + 
Sbjct: 68  LAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAH- 126

Query: 240 IDKLIQVAASQLSDQLPESREAARTLL 266
               + +           SR +A  L 
Sbjct: 127 ---FVPLVKRLAGGDWFTSRTSACGLF 150

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (84), Expect = 0.002
 Identities = 22/171 (12%), Positives = 54/171 (31%), Gaps = 12/171 (7%)

Query: 111 IFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLL 170
           +     +  +   ++P +V+  ++ +  V    I     +         D     L  L 
Sbjct: 390 VNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFD---EKLNSLC 446

Query: 171 LKSSQDKRFVC-EAAEKALVAMTTWVSPI----LLLPKLQPYLKNRNPRIRAKASMCFSR 225
           +    D  +   EAA   L  +            ++PK+     + N   R     C + 
Sbjct: 447 MAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINV 506

Query: 226 SVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSVYEKS 276
                G +   ++ +  ++++      D +   R      L ++  + + S
Sbjct: 507 LSEVCGQDITTKHMLPTVLRM----AGDPVANVRFNVAKSLQKIGPILDNS 553

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	324
d1b3ua_	588	Constant regulatory domain of protein phosphatase	99.07
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.68
d1b3ua_	588	Constant regulatory domain of protein phosphatase	98.61
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	98.6
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	98.51
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	98.37
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	98.18
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	98.13
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	98.06
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	98.01
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	98.0
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	97.9
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	97.89
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	97.89
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	97.78
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	97.76
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	97.58
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	97.58
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	97.5
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	97.44
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	97.36
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	97.22
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	97.14
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	96.95
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	96.66
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	96.59
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	95.58
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	95.58
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	94.76
d1dvpa1	145	Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7	93.84
d1mhqa_	143	ADP-ribosylation factor binding protein Gga2 {Huma	93.6
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	93.3
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	91.7
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	91.04
d1ujka_	145	ADP-ribosylation factor binding protein Gga1 {Huma	90.07
d1juqa_	151	ADP-ribosylation factor binding protein Gga3 {Huma	89.15
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	86.34
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	84.95

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=2.5e-09  Score=103.41  Aligned_cols=177  Identities=12%  Similarity=0.105  Sum_probs=142.7

Q ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHHHHhHc-HHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhH
Q 020587           84 VKTLVAGLDSKDWVVVCEALNNVRRLSIFH-KEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLL  162 (324)
Q Consensus        84 L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h-~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~  162 (324)
                      +..+...+++.+|..|..++..+..++... ++++   .+.+.+.+...+.|.-..|-..|+.+++.|+..+|...  ..
T Consensus       404 l~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~~~~~---~~~l~~~l~~~l~D~~~~VR~~A~~~L~~l~~~~~~~~--~~  478 (588)
T d1b3ua_         404 LPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFF---DEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEW--AH  478 (588)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGC---CHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHH--HH
T ss_pred             HHHHHHHHhcccHHHHHHHHHHHHHHHHHcChHhH---HHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHhCcHH--HH
Confidence            345556678999999999999999887542 2222   23355567778889889999999999999999998753  34


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcCh----hhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhc
Q 020587          163 DPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSP----ILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEY  238 (324)
Q Consensus       163 d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~----~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~  238 (324)
                      +.+++.++....+.+..+|..+-.++..+...+++    ..++|.|...+++..|.||..++..|..+...++...+   
T Consensus       479 ~~i~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~ilp~ll~~~~D~v~nVR~~a~~~l~~i~~~~~~~~~---  555 (588)
T d1b3ua_         479 ATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTL---  555 (588)
T ss_dssp             HHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHHH---
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCcHhH---
Confidence            56778888878888889999999999998887765    45788899999999999999999999998877655422   


Q ss_pred             cHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 020587          239 GIDKLIQVAASQLSDQLPESREAARTLLLEL  269 (324)
Q Consensus       239 ~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L  269 (324)
                       ...+.+.+.++++|.+++||++|.+++..|
T Consensus       556 -~~~i~~~l~~L~~D~d~dVr~~A~~al~~l  585 (588)
T d1b3ua_         556 -QSEVKPILEKLTQDQDVDVKYFAQEALTVL  585 (588)
T ss_dssp             -HHHHHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred             -HHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence             456788888999999999999999998754

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=8.5e-07  Score=80.57  Aligned_cols=192  Identities=17%  Similarity=0.164  Sum_probs=144.5

Q ss_pred             HHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHH-HHHHccCcchHHHHHHHHHHHHHHHHhhhhH-----
Q 020587           85 KTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPL-VVKSLKNPRSAVCKTAIMTAADIFSAYNDRM-----  158 (324)
Q Consensus        85 ~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~-l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m-----  158 (324)
                      ..+...+.++||+.+..++..+..++..+++.+.+.+.+++.. +....++-.-.+.+.|+..+..++.......     
T Consensus       219 ~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~  298 (458)
T d1ibrb_         219 QVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASE  298 (458)
T ss_dssp             HHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             hhHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            3445556788999999999999999999998887777776544 4556677777888999988888876643222     


Q ss_pred             ----------------HhhHHHHHHHHHHHhcC-------ChHHHHHHHHHHHHHHHhhcChh---hhHHHHhhhccCCC
Q 020587          159 ----------------IDLLDPLLVQLLLKSSQ-------DKRFVCEAAEKALVAMTTWVSPI---LLLPKLQPYLKNRN  212 (324)
Q Consensus       159 ----------------~~~~d~ll~~LL~Ka~~-------sk~FI~e~A~~AL~amv~~vs~~---~ll~~L~~~~~hKN  212 (324)
                                      ...++.+++.+..-..+       ...-++..+..++..++...+..   .+++.|..++++.+
T Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~~i~~~l~s~~  378 (458)
T d1ibrb_         299 AAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPD  378 (458)
T ss_dssp             TTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTCSS
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccHhhhhHHHHHHHHHhcCCC
Confidence                            23345556666554432       23347888999999998877542   35667778899999


Q ss_pred             HHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhcC
Q 020587          213 PRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSVYEKSH  277 (324)
Q Consensus       213 p~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~~~a  277 (324)
                      +.+|..+...|..+.+..+...+..+ ++.+++.+..+++|.++.+|++|-.++..+...+++..
T Consensus       379 ~~~r~aal~~l~~i~~~~~~~~~~~~-l~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~~~~~~~  442 (458)
T d1ibrb_         379 WRYRDAAVMAFGCILEGPEPSQLKPL-VIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAA  442 (458)
T ss_dssp             HHHHHHHHHHHHHTSSSSCTTTTCTT-TTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGC
T ss_pred             HHHHHHHHHHHHHHHHhcCHhHHHHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhccc
Confidence            99999999998888876544444444 77899999999999999999999999988888877554

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=5.5e-07  Score=86.57  Aligned_cols=181  Identities=12%  Similarity=0.093  Sum_probs=139.4

Q ss_pred             HHHHhhcCCCCHHHHHHHHHHHHHHHhHc-HHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhHH
Q 020587           85 KTLVAGLDSKDWVVVCEALNNVRRLSIFH-KEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLD  163 (324)
Q Consensus        85 ~~~l~~L~s~dW~~r~eaL~~LRrLa~~h-~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d  163 (324)
                      ..++..+.+++++.+..++..+..+...- +..   ....+++.+...++|....+-..++.+++.++..++..+  +-+
T Consensus       366 p~l~~~l~d~~~~v~~~~~~~l~~~~~~~~~~~---~~~~ll~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~~~~--~~~  440 (588)
T d1b3ua_         366 PLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQ---LSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEF--FDE  440 (588)
T ss_dssp             HHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHH---HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGG--CCH
T ss_pred             HHHHHHHHhhhhhhhhHHHHHHHHHHhhcchhh---hhhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcChHh--HHH
Confidence            34455667788888877777776665432 222   234566777788888888899999999999999988554  234


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChh----hhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhcc
Q 020587          164 PLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPI----LLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYG  239 (324)
Q Consensus       164 ~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~----~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~  239 (324)
                      .+.+.++....+...-||+.|..+|..+++..++.    .+++.|....+++|..+|..++.++..+.+..+...    -
T Consensus       441 ~l~~~l~~~l~D~~~~VR~~A~~~L~~l~~~~~~~~~~~~i~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~----~  516 (588)
T d1b3ua_         441 KLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDI----T  516 (588)
T ss_dssp             HHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHH----H
T ss_pred             HHHHHHHhhccCCchhHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcChHH----H
Confidence            55566666678889999999999999999988764    377888888999999999999999888877655432    2


Q ss_pred             HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhh
Q 020587          240 IDKLIQVAASQLSDQLPESREAARTLLLELQSVYE  274 (324)
Q Consensus       240 ~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~  274 (324)
                      .+.+++.+.+++.|..|.||..+-+++..+...++
T Consensus       517 ~~~ilp~ll~~~~D~v~nVR~~a~~~l~~i~~~~~  551 (588)
T d1b3ua_         517 TKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILD  551 (588)
T ss_dssp             HHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSC
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcC
Confidence            56789999999999999999999988876655444

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=2.4e-06  Score=86.67  Aligned_cols=209  Identities=12%  Similarity=0.125  Sum_probs=163.6

Q ss_pred             HHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhHHH
Q 020587           85 KTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDP  164 (324)
Q Consensus        85 ~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d~  164 (324)
                      .-++..+.+.++..|..|+..+-.++.+.+..+.+.++.+++.+.+.+++--..|+.+|+.++|+|+..+|..|.||++.
T Consensus       668 ~~l~~~l~~~~~~vr~~a~~llgdl~~~~~~~~~~~l~~~~~~l~~~L~~~~~~v~~~a~~~ig~ia~~~~~~~~py~~~  747 (888)
T d1qbkb_         668 TLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPM  747 (888)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHTGGGGGGGSHH
T ss_pred             HHHHHHhCCCChHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence            34455567788888999998888888877777888899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcC--ChHHHHHHHHHHHHHHHhhcCh------hhhHHHHhhhccC-CCHHHHHHHHHHHHhhcccccccch
Q 020587          165 LLVQLLLKSSQ--DKRFVCEAAEKALVAMTTWVSP------ILLLPKLQPYLKN-RNPRIRAKASMCFSRSVPRLGVEGI  235 (324)
Q Consensus       165 ll~~LL~Ka~~--sk~FI~e~A~~AL~amv~~vs~------~~ll~~L~~~~~h-KNp~VR~~aa~~L~~~v~~~g~~~i  235 (324)
                      +++.|+....+  .++-|.+.+..||..|...++.      ..+++.+...+.+ ++..-+..+...+..+++.. +.++
T Consensus       748 il~~L~~il~~~~~~~~v~~n~~~~lgrl~~~~p~~~~~~l~~~~~~~~~~l~~~~d~~ek~~~~~g~~~~i~~~-p~~~  826 (888)
T d1qbkb_         748 VLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVN-PSGV  826 (888)
T ss_dssp             HHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCHHHHGGGGGGTHHHHHHHHTTSCCSHHHHHHHHHHHHHHHHC-GGGT
T ss_pred             HHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHCHHHHHhhHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHC-cHHH
Confidence            99999999865  3566888888899887765432      2244444445543 56677888888888888754 3434


Q ss_pred             hhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCcchhHHHHHHHhcCChhhHHHHHHH
Q 020587          236 KEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSVYEKSHDSAPATVSDSPEMDSWENFCQSKLSPLSAQAVLRV  312 (324)
Q Consensus       236 ~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~~~a~~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~  312 (324)
                      .. .+..++++++... +..++++....+++..+.+.++               .+.|++|.. .|+|...+..-.+
T Consensus       827 ~~-~l~~~~~~i~~~~-~~~~~~~~~~~~~l~~~~~~~~---------------~~~w~~~~~-~~~~~~~~~l~~~  885 (888)
T d1qbkb_         827 IQ-DFIFFCDAVASWI-NPKDDLRDMFCKILHGFKNQVG---------------DENWRRFSD-QFPLPLKERLAAF  885 (888)
T ss_dssp             GG-GHHHHHHHHTTCS-SCCHHHHHHHHHHHHHHHHHHC---------------HHHHHHHHH-SSCHHHHHHHHHH
T ss_pred             HH-HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHcC---------------cHhHHHHHH-cCCHHHHHHHHHh
Confidence            43 4778888887654 4569999999999988888776               456999874 6999988876543

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=9.3e-07  Score=91.58  Aligned_cols=189  Identities=14%  Similarity=0.120  Sum_probs=149.1

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHHhHcH-HHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhh
Q 020587           83 SVKTLVAGLDSKDWVVVCEALNNVRRLSIFHK-EAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDL  161 (324)
Q Consensus        83 ~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~-~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~  161 (324)
                      .+..+++++.+.|+.-|+-|++.|........ ..-.....++++.+++.+.|....|-..|+.|++.|...++.   +.
T Consensus         4 ~~~~ll~k~~~~D~d~R~ma~~dl~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~---~~   80 (1207)
T d1u6gc_           4 HISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE---YQ   80 (1207)
T ss_dssp             HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH---HH
T ss_pred             hHHHHHHhcCCCCHhHHHHHHHHHHHHHhhcccccChHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcH---hh
Confidence            46789999999999999999999988654211 011123567889999999999999999999999999887764   45


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcCh------------hhhHHHHhhh-ccCCCHHHHHHHHHHHHhhcc
Q 020587          162 LDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSP------------ILLLPKLQPY-LKNRNPRIRAKASMCFSRSVP  228 (324)
Q Consensus       162 ~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~------------~~ll~~L~~~-~~hKNp~VR~~aa~~L~~~v~  228 (324)
                      ++.++..|+....+.+...++.+..+|..++..+..            ..+++.+... .+.+++.+|..+...+..++.
T Consensus        81 ~~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~  160 (1207)
T d1u6gc_          81 VETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLS  160 (1207)
T ss_dssp             HHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHH
Confidence            678888888888888889999999999999987653            2244444443 457889999999999999999


Q ss_pred             cccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhc
Q 020587          229 RLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSVYEKS  276 (324)
Q Consensus       229 ~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~~~  276 (324)
                      ++|.. +..+ .+.+++.+...++|..+.+|..|-.++..|...++..
T Consensus       161 ~~g~~-l~~~-~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~  206 (1207)
T d1u6gc_         161 RQGGL-LVNF-HPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI  206 (1207)
T ss_dssp             HTCSS-CTTT-HHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC---
T ss_pred             HhhHh-hHHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCHH
Confidence            98864 3333 6789999999999999999999999988776665543

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.37  E-value=5.1e-06  Score=81.08  Aligned_cols=193  Identities=14%  Similarity=0.144  Sum_probs=145.8

Q ss_pred             HHHHHhhcC-CCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhH
Q 020587           84 VKTLVAGLD-SKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLL  162 (324)
Q Consensus        84 L~~~l~~L~-s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~  162 (324)
                      +..++..+. ..+|..+..++..+..++...++.+.+.++.+++.+...+.+.-..|...|+.++++++..++..+.+++
T Consensus       599 ~~~l~~~l~~~~~~~v~~~~l~~l~~l~~~~~~~~~~~l~~i~p~l~~~l~~~~~~v~~~a~~~l~~i~~~~~~~~~~~~  678 (861)
T d2bpta1         599 MGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYS  678 (861)
T ss_dssp             HHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHH
T ss_pred             HHHHhhhcccCCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHhCCCCHHHHHHHHHHHHHHHHHhHHHhHhhH
Confidence            344444443 4568778888888888888766666788899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCC--hHHHHHHHHHHHHHHHhhcCh------hhhHHHHhhhccCCC-----------HHHHHHHHHHH
Q 020587          163 DPLLVQLLLKSSQD--KRFVCEAAEKALVAMTTWVSP------ILLLPKLQPYLKNRN-----------PRIRAKASMCF  223 (324)
Q Consensus       163 d~ll~~LL~Ka~~s--k~FI~e~A~~AL~amv~~vs~------~~ll~~L~~~~~hKN-----------p~VR~~aa~~L  223 (324)
                      +.+++.|+...++.  ...++..+-.|+..++.++.+      ..+++.+...++.+.           ..+|..+...+
T Consensus       679 ~~i~~~L~~~l~~~~~~~~~k~~~~~~l~~i~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  758 (861)
T d2bpta1         679 DAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAY  758 (861)
T ss_dssp             HHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCcccHHHHHHHHHHHHHHHHHH
Confidence            99999999988654  567889999999999887754      235555555554433           24677777766


Q ss_pred             Hhhccccccc--chhhccHHHHHHHHHHhccCC----CHHHHHHHHHHHHHHHHHhhhcC
Q 020587          224 SRSVPRLGVE--GIKEYGIDKLIQVAASQLSDQ----LPESREAARTLLLELQSVYEKSH  277 (324)
Q Consensus       224 ~~~v~~~g~~--~i~~~~~~~ll~~l~~~L~D~----~pEvR~~AR~~l~~L~~~~~~~a  277 (324)
                      ..++..+...  .+..+ ++.+++.+...+.|.    ..+++..+=.++.-|...|++..
T Consensus       759 ~~i~~~~~~~~~~~~p~-~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~  817 (861)
T d2bpta1         759 VGIVAGLHDKPEALFPY-VGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDGS  817 (861)
T ss_dssp             HHHHHHTTTCHHHHGGG-HHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHCTTST
T ss_pred             HHHHHHhcCCHHHHHHH-HHHHHHHHHHHHhCCccCCCHHHHHHHHHHHHHHHHHCcchh
Confidence            6666544322  23334 778888888888774    56778787778888888887644

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=3.4e-05  Score=67.46  Aligned_cols=176  Identities=13%  Similarity=-0.029  Sum_probs=126.3

Q ss_pred             CCCHHHHHHHHHHHHHHHhHcHHHHH--HhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhh-HHHHHHHH
Q 020587           93 SKDWVVVCEALNNVRRLSIFHKEAML--DILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDL-LDPLLVQL  169 (324)
Q Consensus        93 s~dW~~r~eaL~~LRrLa~~h~~~l~--~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~-~d~ll~~L  169 (324)
                      +.|++.+..|+..|..|+.. .+.-.  ..++.+...+...+++....|-..|+.+++.++..-....... -...++.|
T Consensus        28 ~~~~~~~~~Al~~L~~L~~~-~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~L  106 (264)
T d1xqra1          28 AADQQEREGALELLADLCEN-MDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKL  106 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHcC-HHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHH
Confidence            34789999999999999742 32211  2355555555667888999999999999999997532221111 12467777


Q ss_pred             HHHhc-CChHHHHHHHHHHHHHHHhhcChhh-------hHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHH
Q 020587          170 LLKSS-QDKRFVCEAAEKALVAMTTWVSPIL-------LLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGID  241 (324)
Q Consensus       170 L~Ka~-~sk~FI~e~A~~AL~amv~~vs~~~-------ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~  241 (324)
                      +.... +....++..+-.||..++.+.++.+       .++.|...+++.++.++..++..|..++..-. .......-.
T Consensus       107 v~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~  185 (264)
T d1xqra1         107 LRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHP-EHKGTLCSM  185 (264)
T ss_dssp             HHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCG-GGHHHHHHT
T ss_pred             HHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccH-HHHHHHHHh
Confidence            76664 4566789999999999998776544       35678888999999999999999998876422 212222223


Q ss_pred             HHHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 020587          242 KLIQVAASQLSDQLPESREAARTLLLELQ  270 (324)
Q Consensus       242 ~ll~~l~~~L~D~~pEvR~~AR~~l~~L~  270 (324)
                      ..++.+..++.+.++++|+.+-.+++.|.
T Consensus       186 ~~v~~L~~lL~~~~~~~~~~a~~aL~~L~  214 (264)
T d1xqra1         186 GMVQQLVALVRTEHSPFHEHVLGALCSLV  214 (264)
T ss_dssp             THHHHHHHHHTSCCSTHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence            35788888999999999999988887664

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=6e-06  Score=83.67  Aligned_cols=179  Identities=17%  Similarity=0.208  Sum_probs=142.8

Q ss_pred             CCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHHHH
Q 020587           93 SKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLLK  172 (324)
Q Consensus        93 s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d~ll~~LL~K  172 (324)
                      ..+|..|.-+...|..++...++.   .++.+++.+...+.+....+-..|+.+++.+..+..+.+.++++.+++.|+..
T Consensus       368 ~~~~~~r~~a~~~L~~l~~~~~~~---il~~~l~~l~~~l~s~~~~~reaa~~alg~i~eg~~~~~~~~l~~li~~l~~~  444 (888)
T d1qbkb_         368 ISDWNLRKCSAAALDVLANVYRDE---LLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQC  444 (888)
T ss_dssp             TSCCSSHHHHHHHSTTTTTTCCSS---SHHHHHHHHHHTTTSSSHHHHHHHHHHHHHHTTTSHHHHTTTHHHHHHHHHHH
T ss_pred             hhhhhHHHHHHHHHhhHhhhhHHH---HHHHHHHHHHHhhccchhHHHHHHHHHhhhhhhhHHHHhcccchhhhHHHHHh
Confidence            356988777777777776543332   24445566667777777777778899999999988899999999999999999


Q ss_pred             hcCChHHHHHHHHHHHHHHHhhcCh-------hhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHHHHH
Q 020587          173 SSQDKRFVCEAAEKALVAMTTWVSP-------ILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQ  245 (324)
Q Consensus       173 a~~sk~FI~e~A~~AL~amv~~vs~-------~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~  245 (324)
                      ..+.+..||..+..+|..++.++.+       ..+++.|...+.+.|+.||..++..|..+++..+.. +..+ .+.+++
T Consensus       445 l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~-l~p~-~~~il~  522 (888)
T d1qbkb_         445 LSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTE-LVPY-LAYILD  522 (888)
T ss_dssp             TTSSCHHHHHHHHHHHHHTHHHHHSSCHHHHTTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTS-SGGG-HHHHHH
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhh-hhhH-HHHHHH
Confidence            9999999999999999877765532       347777888889999999999999999999877654 5455 788999


Q ss_pred             HHHHhccCCCHHHHHHHHHHHHHHHHHhhhc
Q 020587          246 VAASQLSDQLPESREAARTLLLELQSVYEKS  276 (324)
Q Consensus       246 ~l~~~L~D~~pEvR~~AR~~l~~L~~~~~~~  276 (324)
                      .+...+.+.....+..+-.++..+....+..
T Consensus       523 ~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~  553 (888)
T d1qbkb_         523 TLVFAFSKYQHKNLLILYDAIGTLADSVGHH  553 (888)
T ss_dssp             HHHHHTTTCCHHHHHHHHHHHHHHHHHHGGG
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHhhhcc
Confidence            9999999999999988888887776655433

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=2.5e-05  Score=80.61  Aligned_cols=179  Identities=15%  Similarity=0.132  Sum_probs=132.6

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhh-hhHHhh
Q 020587           83 SVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYN-DRMIDL  161 (324)
Q Consensus        83 ~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~-~~m~~~  161 (324)
                      ....++..+++++++.|..|...+-+++..+++...+       .+.+.+.+- .......+..+.++....+ ..+.++
T Consensus       854 l~~~l~~~l~~~~~~vr~aAa~aLg~l~~~~~~~~lp-------~il~~l~~~-~~~~~~ll~al~ei~~~~~~~~~~~~  925 (1207)
T d1u6gc_         854 LKSVILEAFSSPSEEVKSAASYALGSISVGNLPEYLP-------FVLQEITSQ-PKRQYLLLHSLKEIISSASVVGLKPY  925 (1207)
T ss_dssp             HHHHHHHGGGCSCHHHHHHHHHHHHHHHHHTHHHHHH-------HHHHHHHSC-GGGHHHHHHHHHHHHHSSCSTTTHHH
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhHHHHhH-------HHHHHHhcC-chHHHHHHHHHHHHHHhcchhhhHHH
Confidence            3455667778888888888888887777766543322       223333211 1122234556666666554 556788


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHH
Q 020587          162 LDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGID  241 (324)
Q Consensus       162 ~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~  241 (324)
                      ++.+++.|+....+....+|..+..||..++. ..|..++|.|..++++.++.+|..+...+..++...+.. +..+ +.
T Consensus       926 ~~~i~~~L~~~~~~~~~~vr~~~a~~lg~L~~-~~~~~~lp~L~~~l~~~~~~~r~~ai~~l~~~~~~~~~~-~~~~-l~ 1002 (1207)
T d1u6gc_         926 VENIWALLLKHCECAEEGTRNVVAECLGKLTL-IDPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQP-IDPL-LK 1002 (1207)
T ss_dssp             HHHHHHHHTTCCCCSSTTHHHHHHHHHHHHHH-SSGGGTHHHHTTTSSSSCHHHHHHHHHHTGGGCCSSCCT-HHHH-HH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcchh-hHHH-HH
Confidence            99999999888877778899999999998764 677889999999999999999999999999888876644 4444 66


Q ss_pred             HHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Q 020587          242 KLIQVAASQLSDQLPESREAARTLLLELQSV  272 (324)
Q Consensus       242 ~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~  272 (324)
                      .+++.+...++|.++++|..|-.++..+...
T Consensus      1003 ~li~~ll~~l~d~~~~vR~~al~~l~~~~~~ 1033 (1207)
T d1u6gc_        1003 NCIGDFLKTLEDPDLNVRRVALVTFNSAAHN 1033 (1207)
T ss_dssp             HHSTTTHHHHSSSSTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Confidence            7777777889999999999999998866544

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.01  E-value=5e-05  Score=69.01  Aligned_cols=194  Identities=16%  Similarity=0.105  Sum_probs=138.1

Q ss_pred             HHHHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHh-hhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHh
Q 020587           82 TSVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDI-LGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMID  160 (324)
Q Consensus        82 ~~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~-L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~  160 (324)
                      ..+..+...+.+.|++.+..++..+..|+.++++..... -..+++.++..+++....+...|+.+++.++..-......
T Consensus       188 ~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~~l~~l~~~~~~~~~~  267 (434)
T d1q1sc_         188 QILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQK  267 (434)
T ss_dssp             HHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred             hHHHHHHHHHhccccchhhhHHhhhcccchhhhhhHHHHhhcccchhcccccccchhhhhhchhhhhhhHHhhhhHHHHH
Confidence            456666777889999999999999999987765544322 2347788888999999999999999998887532211111


Q ss_pred             hH-HHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcCh-------hhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccc
Q 020587          161 LL-DPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSP-------ILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGV  232 (324)
Q Consensus       161 ~~-d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~-------~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~  232 (324)
                      .+ ..+++.|..-..+.+.-++..+-.+|..++.+...       ..+++.+...+.+.++.+|..++..+.+++.....
T Consensus       268 ~~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~  347 (434)
T d1q1sc_         268 VIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTV  347 (434)
T ss_dssp             HHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCH
T ss_pred             HHhccccchHHHhhcccchhhhHHHHHHHhhhccccchhHHHHhhhhhHHHHHHHHhccChHHHHHHHHHHHHHHhcCCH
Confidence            11 22445555556666777888888888887764332       23667777888899999999999999988875443


Q ss_pred             cchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhh
Q 020587          233 EGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSVYEK  275 (324)
Q Consensus       233 ~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~~  275 (324)
                      +.+....-..+++.+..++.+.+++++..+-.++..|....++
T Consensus       348 ~~~~~l~~~~~i~~L~~ll~~~d~~~~~~~l~~l~~ll~~~~~  390 (434)
T d1q1sc_         348 EQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEK  390 (434)
T ss_dssp             HHHHHHHHTTCHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHh
Confidence            3222211122467777899999999999998888877766553

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.00  E-value=0.00033  Score=67.81  Aligned_cols=193  Identities=14%  Similarity=0.122  Sum_probs=146.5

Q ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHH-HHHccCcchHHHHHHHHHHHHHHHHhhh------
Q 020587           84 VKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLV-VKSLKNPRSAVCKTAIMTAADIFSAYND------  156 (324)
Q Consensus        84 L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l-~~~vksLRS~Vsk~A~~tl~dLf~~L~~------  156 (324)
                      +..+...+.+++|+.+..++..+..++..+++.+.+.+.+++..+ ....++....+...++..+..++.....      
T Consensus       226 ~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~  305 (861)
T d2bpta1         226 MQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELA  305 (861)
T ss_dssp             HHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445566778899999999999999999988888888887766544 5677888889999999888777655321      


Q ss_pred             -----------hHHhhHHHHHHHHHHHhcC-------ChHHHHHHHHHHHHHHHhhcChh---hhHHHHhhhccCCCHHH
Q 020587          157 -----------RMIDLLDPLLVQLLLKSSQ-------DKRFVCEAAEKALVAMTTWVSPI---LLLPKLQPYLKNRNPRI  215 (324)
Q Consensus       157 -----------~m~~~~d~ll~~LL~Ka~~-------sk~FI~e~A~~AL~amv~~vs~~---~ll~~L~~~~~hKNp~V  215 (324)
                                 ...+.+..+++.++.-...       +..-++..+..+|..+....+..   .+++.+.....+.++..
T Consensus       306 ~~~~~~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (861)
T d2bpta1         306 QFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRN  385 (861)
T ss_dssp             HCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHH
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhcchhhhhhhcchhhhhhhhHHHHH
Confidence                       1234566777777766532       23357788888898888776542   23344567778999999


Q ss_pred             HHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhcC
Q 020587          216 RAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSVYEKSH  277 (324)
Q Consensus       216 R~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~~~a  277 (324)
                      |..+...+..+.+..+...+..+ .+.+++.+..++.|.++.+|+.+-.++..+...++...
T Consensus       386 ~~~a~~~l~~i~~~~~~~~~~~~-l~~~l~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~  446 (861)
T d2bpta1         386 REAAVMAFGSIMDGPDKVQRTYY-VHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESI  446 (861)
T ss_dssp             HHHHHHHHHHTSSSSCHHHHHHH-HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGS
T ss_pred             HHHHHHHHHHHHhhcchhhHHHH-HHHHHHHHHHHhcCcchhhhhHHHHHHHHHHHHhchhh
Confidence            99999999888876655433333 78899999999999999999999999998888877654

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.90  E-value=0.0003  Score=63.66  Aligned_cols=184  Identities=15%  Similarity=0.116  Sum_probs=129.6

Q ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhh-hhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhH
Q 020587           84 VKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDIL-GDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLL  162 (324)
Q Consensus        84 L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L-~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~  162 (324)
                      +..++..+.+.++..+..++..++.++.+.++.....+ ..++..+...+++.+..|.+.|+.+++.|+..-........
T Consensus       232 ~~~Lv~ll~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~  311 (434)
T d1q1sc_         232 VPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVV  311 (434)
T ss_dssp             HHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred             chhcccccccchhhhhhchhhhhhhHHhhhhHHHHHHHhccccchHHHhhcccchhhhHHHHHHHhhhccccchhHHHHh
Confidence            34556667888999999999999999876554433222 34566778889999999999999999999865443333333


Q ss_pred             H-HHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhh--------hHHHHhhhccCCCHHHHHHHHHHHHhhccccc--
Q 020587          163 D-PLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPIL--------LLPKLQPYLKNRNPRIRAKASMCFSRSVPRLG--  231 (324)
Q Consensus       163 d-~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~--------ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g--  231 (324)
                      + .+++.|+.-..+.+.-++..|..+|..++.+.++..        +++.|...++.+++.++..+...|..+++...  
T Consensus       312 ~~~~i~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~d~~~~~~~l~~l~~ll~~~~~~  391 (434)
T d1q1sc_         312 NHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKL  391 (434)
T ss_dssp             HTTCHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHTT
T ss_pred             hhhhHHHHHHHHhccChHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhc
Confidence            2 256677766666667789999999998888876653        35667788889999999999988888876322  


Q ss_pred             -cc-chhh-ccHHHHHHHHHHhccCCCHHHHHHHHHHHH
Q 020587          232 -VE-GIKE-YGIDKLIQVAASQLSDQLPESREAARTLLL  267 (324)
Q Consensus       232 -~~-~i~~-~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~  267 (324)
                       .. .+.. ..-..+++.+-.+.+..++++|+.|-+++.
T Consensus       392 ~~~~~~~~~~~~~~~~~~i~~L~~~~n~~i~~~a~~il~  430 (434)
T d1q1sc_         392 GETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIE  430 (434)
T ss_dssp             TCHHHHHHHHHHTTSHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHH
Confidence             11 0110 000012334556778999999999888774

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=0.00024  Score=69.34  Aligned_cols=112  Identities=20%  Similarity=0.194  Sum_probs=86.6

Q ss_pred             HHHHhhcC--CCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcc-hHHHHHHHHHHHHHHHHhhhhHHhh
Q 020587           85 KTLVAGLD--SKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPR-SAVCKTAIMTAADIFSAYNDRMIDL  161 (324)
Q Consensus        85 ~~~l~~L~--s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLR-S~Vsk~A~~tl~dLf~~L~~~m~~~  161 (324)
                      ..++..+.  ..++..+..++..+..++...++.+.+.+..+++.+.+.+++.- ..|...|+.++++++..++..+.|+
T Consensus       609 ~~l~~~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~l~~ii~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~  688 (876)
T d1qgra_         609 ASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPF  688 (876)
T ss_dssp             HHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHH
T ss_pred             HHHHHHHhcCCCCcchHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhHHhhhhh
Confidence            34444443  34677788888888888877666677788888888888887544 5689999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCC--hHHHHHHHHHHHHHHHhhcC
Q 020587          162 LDPLLVQLLLKSSQD--KRFVCEAAEKALVAMTTWVS  196 (324)
Q Consensus       162 ~d~ll~~LL~Ka~~s--k~FI~e~A~~AL~amv~~vs  196 (324)
                      ++.+++.|+....+.  ..-++..+-.|+..|+..+.
T Consensus       689 ~~~i~~~l~~~l~~~~~~~~~k~~~~~~i~~i~~~~~  725 (876)
T d1qgra_         689 CDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIG  725 (876)
T ss_dssp             HHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHG
T ss_pred             HHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHh
Confidence            999999999998754  35677777778777776654

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.78  E-value=0.0011  Score=64.48  Aligned_cols=193  Identities=17%  Similarity=0.177  Sum_probs=139.7

Q ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhH-HHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhH----
Q 020587           84 VKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDV-IPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRM----  158 (324)
Q Consensus        84 L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~i-v~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m----  158 (324)
                      ++.+...+.+++|..+..++..+..+....++.+.+.+.+. ...+....++-.-.+.+.++.....++.......    
T Consensus       219 ~~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  298 (876)
T d1qgra_         219 MQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEAS  298 (876)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            44455566788999999999999999988888777766553 4455667777777888888887777765432211    


Q ss_pred             -----------------HhhHHHHHHHHHHHhcC-------ChHHHHHHHHHHHHHHHhhcChh---hhHHHHhhhccCC
Q 020587          159 -----------------IDLLDPLLVQLLLKSSQ-------DKRFVCEAAEKALVAMTTWVSPI---LLLPKLQPYLKNR  211 (324)
Q Consensus       159 -----------------~~~~d~ll~~LL~Ka~~-------sk~FI~e~A~~AL~amv~~vs~~---~ll~~L~~~~~hK  211 (324)
                                       ......+++.++.-..+       +..-++..|..++..+.......   .+++.+..++.+.
T Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~  378 (876)
T d1qgra_         299 EAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNP  378 (876)
T ss_dssp             HHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCS
T ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccccchHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhccc
Confidence                             12344555555544322       23347888999999888876542   3556677888899


Q ss_pred             CHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhcC
Q 020587          212 NPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSVYEKSH  277 (324)
Q Consensus       212 Np~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~~~a  277 (324)
                      ++..|..+...+..+....+...+..+ ...+++.+..++.|.++.+|.++-.++..+...++...
T Consensus       379 ~~~~r~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~  443 (876)
T d1qgra_         379 DWRYRDAAVMAFGCILEGPEPSQLKPL-VIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAA  443 (876)
T ss_dssp             SHHHHHHHHHHHHHTSSSSCHHHHHHH-HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGT
T ss_pred             hHHHHHHHHHHHHhhhhhhhHHHHHHH-HHHHHHHHHHhhcCCccHHHHHHHHHHHHHHHHcchhh
Confidence            999999988888877776544434333 78899999999999999999999999988877776544

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.58  E-value=0.00015  Score=55.04  Aligned_cols=85  Identities=15%  Similarity=0.091  Sum_probs=69.4

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHHHHH
Q 020587          166 LVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQ  245 (324)
Q Consensus       166 l~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~  245 (324)
                      ++.|+..+.+.+..||..|-.+|..    +.....++.|...++|.++.||..++..|..+    |        -+..++
T Consensus        24 ~~~L~~~l~d~~~~vR~~a~~~L~~----~~~~~~~~~L~~~l~d~~~~VR~~a~~aL~~i----~--------~~~~~~   87 (111)
T d1te4a_          24 FEPLLESLSNEDWRIRGAAAWIIGN----FQDERAVEPLIKLLEDDSGFVRSGAARSLEQI----G--------GERVRA   87 (111)
T ss_dssp             HHHHHHGGGCSCHHHHHHHHHHHGG----GCSHHHHHHHHHHHHHCCTHHHHHHHHHHHHH----C--------SHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHh----cchhhhHHHHHhhhccchhHHHHHHHHHHHHh----C--------ccchHH
Confidence            4566777788899999999888754    45566889899999999999999999987643    2        355778


Q ss_pred             HHHHhccCCCHHHHHHHHHHH
Q 020587          246 VAASQLSDQLPESREAARTLL  266 (324)
Q Consensus       246 ~l~~~L~D~~pEvR~~AR~~l  266 (324)
                      .+..++.|.++++|..|-.+|
T Consensus        88 ~L~~ll~d~~~~vr~~A~~aL  108 (111)
T d1te4a_          88 AMEKLAETGTGFARKVAVNYL  108 (111)
T ss_dssp             HHHHHTTSCCTHHHHHHHHHG
T ss_pred             HHHHHHcCCCHHHHHHHHHHH
Confidence            888999999999999998776

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.58  E-value=0.0012  Score=58.93  Aligned_cols=155  Identities=16%  Similarity=0.147  Sum_probs=107.8

Q ss_pred             cCCCCHHHHHHHHHHHHHHHhHcHHHH---------------------HHhhhhHHHHHHHHcc-------CcchHHHHH
Q 020587           91 LDSKDWVVVCEALNNVRRLSIFHKEAM---------------------LDILGDVIPLVVKSLK-------NPRSAVCKT  142 (324)
Q Consensus        91 L~s~dW~~r~eaL~~LRrLa~~h~~~l---------------------~~~L~~iv~~l~~~vk-------sLRS~Vsk~  142 (324)
                      +.+.+-..+..++..+..++.......                     ...+..+++.+...+.       +-...+.+.
T Consensus       267 ~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~  346 (458)
T d1ibrb_         267 MKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKA  346 (458)
T ss_dssp             HHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHH
T ss_pred             hccccHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHH
Confidence            346667778888888888876543322                     1223444455555443       233357788


Q ss_pred             HHHHHHHHHHHhhhhHHhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcCh-------hhhHHHHhhhccCCCHHH
Q 020587          143 AIMTAADIFSAYNDRMIDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSP-------ILLLPKLQPYLKNRNPRI  215 (324)
Q Consensus       143 A~~tl~dLf~~L~~~m~~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~-------~~ll~~L~~~~~hKNp~V  215 (324)
                      |..++..++..+++.+   ++.+++.+.....+++-.+|++|-.+|..|+..+.+       ..+++.|..+++|.++.|
T Consensus       347 a~~~l~~l~~~~~~~~---~~~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~i~~~l~~~l~d~~~~V  423 (458)
T d1ibrb_         347 AGVCLMLLATCCEDDI---VPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVV  423 (458)
T ss_dssp             HHHHHHHHHHHTTTTH---HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHH
T ss_pred             HHHHHHHHHHhccHhh---hhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHhCCCCHHH
Confidence            9999999999999765   455666666666777888999999999998876532       347888999999999999


Q ss_pred             HHHHHHHHHhhcccccccchhhccHHHHHHHHH
Q 020587          216 RAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAA  248 (324)
Q Consensus       216 R~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~  248 (324)
                      |..++.+|.++.+.++........+..+++.+.
T Consensus       424 R~~a~~~l~~i~~~~~~~~~~~~~l~~ll~~ll  456 (458)
T d1ibrb_         424 RDTAAWTVGRICELLPEAAINDVYLAPLLQCLI  456 (458)
T ss_dssp             HHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhcccchhhHHHHHHHHHh
Confidence            999999999998876554333223555555443

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.50  E-value=0.0012  Score=61.69  Aligned_cols=191  Identities=17%  Similarity=0.098  Sum_probs=138.2

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhh-hHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhh
Q 020587           83 SVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILG-DVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDL  161 (324)
Q Consensus        83 ~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~-~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~  161 (324)
                      .+..+...+.+.|++.+..++..+..|+..+++.....+. .+++.+...+++....+...|+.+++.|...-.......
T Consensus       247 ~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~~~~~~~  326 (503)
T d1wa5b_         247 ALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVV  326 (503)
T ss_dssp             GHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred             HHHHHHHHhccccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHHHHHHHHHhh
Confidence            4667778888999999999999999999877766554443 477888999999999999999999998876443333222


Q ss_pred             HH-HHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcCh-------hhhHHHHhhhccCCCHHHHHHHHHHHHhhccccccc
Q 020587          162 LD-PLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSP-------ILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVE  233 (324)
Q Consensus       162 ~d-~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~-------~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~  233 (324)
                      ++ .+++.|.......+.-|+..+-.+|..++.+...       ..+++.|...+.+-++.||..++.+|..++......
T Consensus       327 ~~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~~~~~~~~~i~~~~~l~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~  406 (503)
T d1wa5b_         327 INAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQR  406 (503)
T ss_dssp             HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTC
T ss_pred             hccchHHHHHHHhcCCCHHHHHHHHHHHHHHhhccHHHHHHHHHccccchhHHhcccCChhHHHHHHHHHHHHHhccccc
Confidence            22 3566777777777888899999998887654221       335667778888899999999999999887643221


Q ss_pred             -chhhc-cHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Q 020587          234 -GIKEY-GIDKLIQVAASQLSDQLPESREAARTLLLELQSVY  273 (324)
Q Consensus       234 -~i~~~-~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~  273 (324)
                       ....+ .-..+++.+..+|...++++...+-.++..+....
T Consensus       407 ~~~~~~l~~~~~l~~l~~~L~~~d~~~~~~~L~~l~~ll~~~  448 (503)
T d1wa5b_         407 PDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMG  448 (503)
T ss_dssp             THHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence             11111 11235567778888899999988887777665443

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.44  E-value=0.0072  Score=51.93  Aligned_cols=182  Identities=12%  Similarity=0.090  Sum_probs=122.8

Q ss_pred             HHHh-hcCCCCHHHHHHHHHHHHHHHhHcHHHHHHh-hhhHHHHHHHHcc-CcchHHHHHHHHHHHHHHHHhhhhHHhhH
Q 020587           86 TLVA-GLDSKDWVVVCEALNNVRRLSIFHKEAMLDI-LGDVIPLVVKSLK-NPRSAVCKTAIMTAADIFSAYNDRMIDLL  162 (324)
Q Consensus        86 ~~l~-~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~-L~~iv~~l~~~vk-sLRS~Vsk~A~~tl~dLf~~L~~~m~~~~  162 (324)
                      .++. .+++++.+-+..|+..|..++.++|..-... -..+++.++..+. +.-..|-+.|+.+++.|+.........+.
T Consensus        62 ~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~  141 (264)
T d1xqra1          62 LLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFL  141 (264)
T ss_dssp             HHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHH
Confidence            4444 4678899999999999999999887543322 2356777777764 45567888999999999876554433322


Q ss_pred             -HHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhh-------hHHHHhhhccCCCHHHHHHHHHHHHhhccccccc-
Q 020587          163 -DPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPIL-------LLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVE-  233 (324)
Q Consensus       163 -d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~-------ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~-  233 (324)
                       ...++.|+......+.-++..+..+|..++..-+..+       .++.|..-+++.++.+|..++..|..+....... 
T Consensus       142 ~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~  221 (264)
T d1xqra1         142 RLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGV  221 (264)
T ss_dssp             HTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHH
T ss_pred             HhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCHHHH
Confidence             2345666666666677788888899988876643322       4677888889999999999999998887643221 


Q ss_pred             -chhh--ccHHHHHHHHHHhcc--CCCHHHHHHHHHHHH
Q 020587          234 -GIKE--YGIDKLIQVAASQLS--DQLPESREAARTLLL  267 (324)
Q Consensus       234 -~i~~--~~~~~ll~~l~~~L~--D~~pEvR~~AR~~l~  267 (324)
                       .+..  .++..++....+.+.  +...|.+++.+.++.
T Consensus       222 ~~~~~~~l~~~~~L~~~~~~~~~~~~~~e~~~~~~~ll~  260 (264)
T d1xqra1         222 RECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQ  260 (264)
T ss_dssp             HHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred             HHHHHhhhhHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence             1111  135556666555543  333566666666654

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.36  E-value=0.0036  Score=58.19  Aligned_cols=190  Identities=14%  Similarity=0.075  Sum_probs=129.6

Q ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhh-hhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhH
Q 020587           84 VKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDIL-GDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLL  162 (324)
Q Consensus        84 L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L-~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~  162 (324)
                      +..++..+.+.++..+..++..+..++..+.+.....+ ..+++.+...+++....+.+.++.+++.|+..-.......+
T Consensus       290 ~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~~~~~~~~~i~  369 (503)
T d1wa5b_         290 PKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVI  369 (503)
T ss_dssp             HHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred             hhhhhhcccCCchhhhhhHHHHHHHHHHHHHHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence            34566777888999999999999999876655443222 35778888999999999999999999999764333333333


Q ss_pred             -HHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChh----------hhHHHHhhhccCCCHHHHHHHHHHHHhhccccc
Q 020587          163 -DPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPI----------LLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLG  231 (324)
Q Consensus       163 -d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~----------~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g  231 (324)
                       ..+++.|+..+.....-++.++..+|..++.+.+..          .+++.|...+++.++.+...+...|..+++...
T Consensus       370 ~~~~l~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~l~~~~~l~~l~~~L~~~d~~~~~~~L~~l~~ll~~~~  449 (503)
T d1wa5b_         370 DANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGE  449 (503)
T ss_dssp             HTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HccccchhHHhcccCChhHHHHHHHHHHHHHhcccccHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence             246666766666556668888889988888765421          134556777888999999988888888775321


Q ss_pred             c---------cchhh-ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhc
Q 020587          232 V---------EGIKE-YGIDKLIQVAASQLSDQLPESREAARTLLLELQSVYEKS  276 (324)
Q Consensus       232 ~---------~~i~~-~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~~~  276 (324)
                      .         ..... ..--..++.+-.+.++.+.++++.|.+++   ...|+++
T Consensus       450 ~~~~~~~~~~~~~~~~iee~g~~~~i~~Lq~~~~~~i~~~A~~il---~~~f~~~  501 (503)
T d1wa5b_         450 ADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKII---ETYFGEE  501 (503)
T ss_dssp             HHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHH---HHHSSSC
T ss_pred             HHhhhhcccchHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHH---HHHcCCc
Confidence            1         00000 00111344466677889999998887766   4667654

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=97.22  E-value=0.0015  Score=55.02  Aligned_cols=127  Identities=10%  Similarity=-0.012  Sum_probs=82.2

Q ss_pred             HHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhc-ChhhhHH
Q 020587          124 VIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWV-SPILLLP  202 (324)
Q Consensus       124 iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~v-s~~~ll~  202 (324)
                      ....+++.+++....|=..|+.+++.+    |.      +..++.|+..+.+.+..++..|-.+|..+.... .....++
T Consensus        20 ~~~~L~~~L~d~~~~vR~~A~~~L~~~----~~------~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~~~~~~~   89 (276)
T d1oyza_          20 NDDELFRLLDDHNSLKRISSARVLQLR----GG------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFN   89 (276)
T ss_dssp             CHHHHHHHTTCSSHHHHHHHHHHHHHH----CC------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHHHHH
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHhh----CC------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccccchHH
Confidence            345677788888888888888777654    21      345666777777777888888888777664332 2233444


Q ss_pred             HH-hhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHH
Q 020587          203 KL-QPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLL  266 (324)
Q Consensus       203 ~L-~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l  266 (324)
                      .+ ...+++.++.||..++..|..+.....      ...+.+++.+...+.|.++.+|..+-.++
T Consensus        90 ~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~------~~~~~~~~~l~~~~~d~~~~vr~~a~~~l  148 (276)
T d1oyza_          90 ILNNMALNDKSACVRATAIESTAQRCKKNP------IYSPKIVEQSQITAFDKSTNVRRATAFAI  148 (276)
T ss_dssp             HHHHHHHHCSCHHHHHHHHHHHHHHHHHCG------GGHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred             HHHHHHhcCCChhHHHHHHHHHHHHccccc------hhhHHHHHHHHHHhcCcchHHHHHHHHHH
Confidence            33 355677888888888777765544211      11456777777777888887776665444

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=97.14  E-value=0.011  Score=49.34  Aligned_cols=169  Identities=12%  Similarity=0.025  Sum_probs=112.2

Q ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhHH
Q 020587           84 VKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLD  163 (324)
Q Consensus        84 L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d  163 (324)
                      ...++..|++.|...|..|+..|..+..          .+.++.++..+++....|-..|+.+++.+...     ...-+
T Consensus        21 ~~~L~~~L~d~~~~vR~~A~~~L~~~~~----------~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~-----~~~~~   85 (276)
T d1oyza_          21 DDELFRLLDDHNSLKRISSARVLQLRGG----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKIC-----KKCED   85 (276)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHCC----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCC-----TTTHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHhhCC----------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhccc-----ccccc
Confidence            4478889999999999999998877631          23456677788899999988999888766322     11223


Q ss_pred             HHHHHHHHHh-cCChHHHHHHHHHHHHHHHhhcCh--hhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccch-----
Q 020587          164 PLLVQLLLKS-SQDKRFVCEAAEKALVAMTTWVSP--ILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGI-----  235 (324)
Q Consensus       164 ~ll~~LL~Ka-~~sk~FI~e~A~~AL~amv~~vs~--~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i-----  235 (324)
                      .+++.|+... .+.+..|+..+-.+|..|...-+.  ..+++.+...+.+.++.||..++..+...-.......+     
T Consensus        86 ~~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~~~~~~~~l~~l~~  165 (276)
T d1oyza_          86 NVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVINDKATIPLLINLLK  165 (276)
T ss_dssp             HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---CCHHHHHHHHT
T ss_pred             chHHHHHHHHhcCCChhHHHHHHHHHHHHccccchhhHHHHHHHHHHhcCcchHHHHHHHHHHhhcchHHHHHHHHHhcc
Confidence            3344444443 467889999999999988876433  44777888888999999999887766543221100000     


Q ss_pred             ----------------hhccHHHHHHHHHHhccCCCHHHHHHHHHHHH
Q 020587          236 ----------------KEYGIDKLIQVAASQLSDQLPESREAARTLLL  267 (324)
Q Consensus       236 ----------------~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~  267 (324)
                                      ...+.....+.+...+.|.++.+|..+-.++.
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~  213 (276)
T d1oyza_         166 DPNGDVRNWAAFAININKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLS  213 (276)
T ss_dssp             CSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             cccchhhhhHHHHHHhhhccccccchhhhhhhhhhhhhhhhhhccccc
Confidence                            00123444555666777778877777666553

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.95  E-value=0.02  Score=53.15  Aligned_cols=181  Identities=14%  Similarity=0.060  Sum_probs=120.6

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHH-HhhhhHHHHHHHHccC-cchHHHHHHHHHHHHHHHHhh--hhH
Q 020587           83 SVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAML-DILGDVIPLVVKSLKN-PRSAVCKTAIMTAADIFSAYN--DRM  158 (324)
Q Consensus        83 ~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~-~~L~~iv~~l~~~vks-LRS~Vsk~A~~tl~dLf~~L~--~~m  158 (324)
                      .+..+...|+++|=..+..|+..+..|+.+.+.... ..-.++++.+++.+.+ -...+.+.|+.++..|+..-.  ..+
T Consensus        18 aip~L~~lL~~~~~~v~~~A~~~l~~l~~~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~i   97 (529)
T d1jdha_          18 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAI   97 (529)
T ss_dssp             HHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccHHHHHHHHhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHH
Confidence            356788888999988999999999999865432221 1124567777777754 346788899999988864321  111


Q ss_pred             HhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhh-------hHHHHhhhccCCCHHHHHHHHHHHHhhccccc
Q 020587          159 IDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPIL-------LLPKLQPYLKNRNPRIRAKASMCFSRSVPRLG  231 (324)
Q Consensus       159 ~~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~-------ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g  231 (324)
                      ..  ...++.|+...++...-++..|-.+|..++......+       .++.|...+++.++.++..++.++..+...-.
T Consensus        98 ~~--~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~  175 (529)
T d1jdha_          98 FK--SGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQ  175 (529)
T ss_dssp             HH--TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCH
T ss_pred             HH--CCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhhhh
Confidence            11  2457888888888888999999999998887655432       56778888899999999999999988765421


Q ss_pred             ccch--hh-ccHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Q 020587          232 VEGI--KE-YGIDKLIQVAASQLSDQLPESREAARTLLLE  268 (324)
Q Consensus       232 ~~~i--~~-~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~  268 (324)
                      ....  .. .+.+.++..+.   ....+.++..+-.++..
T Consensus       176 ~~~~~~~~~~~~~~L~~ll~---~~~~~~~~~~~~~~l~~  212 (529)
T d1jdha_         176 ESKLIILASGGPQALVNIMR---TYTYEKLLWTTSRVLKV  212 (529)
T ss_dssp             HHHHHHHHTTHHHHHHHHHH---HCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcccchHHHHHHH---hhhhHHHHHHHHHHHhh
Confidence            1111  11 12344443332   23345666666555543

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.66  E-value=0.1  Score=48.14  Aligned_cols=182  Identities=14%  Similarity=0.065  Sum_probs=120.3

Q ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHH-hhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhH
Q 020587           84 VKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLD-ILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLL  162 (324)
Q Consensus        84 L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~-~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~  162 (324)
                      +..++..|++.|=..+..++..|..|+.+++..-.. .-...++.++..+++....+...|+.++..|...-...-....
T Consensus       103 i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~  182 (529)
T d1jdha_         103 IPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIIL  182 (529)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence            456666677777677888999999998876532111 2345678888999999999999999999988643211111111


Q ss_pred             H-HHHHHHHHHhc-CChHHHHHHHHHHHHHHHhhcChhh------hHHHHhhhccCCCHHHHHHHHHHHHhhcccccccc
Q 020587          163 D-PLLVQLLLKSS-QDKRFVCEAAEKALVAMTTWVSPIL------LLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEG  234 (324)
Q Consensus       163 d-~ll~~LL~Ka~-~sk~FI~e~A~~AL~amv~~vs~~~------ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~  234 (324)
                      + ..++.|+.... .+..-+...+..++..+..+-...+      .++.|...+++.++.++..++.++..+-... .  
T Consensus       183 ~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls~~~-~--  259 (529)
T d1jdha_         183 ASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAA-T--  259 (529)
T ss_dssp             HTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTC-T--
T ss_pred             hcccchHHHHHHHhhhhHHHHHHHHHHHhhhhccccccchhhhhhhhhhHHHHhcccchhhhhhhhhHHHhccccc-c--
Confidence            1 12344433332 2234566667777766544333222      4556778889999999999988887764321 1  


Q ss_pred             hhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 020587          235 IKEYGIDKLIQVAASQLSDQLPESREAARTLLLEL  269 (324)
Q Consensus       235 i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L  269 (324)
                       ........++.+.+++.+.++++|+.|-.+++.|
T Consensus       260 -~~~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l  293 (529)
T d1jdha_         260 -KQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNL  293 (529)
T ss_dssp             -TCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred             -chhhhhhcchhhhhhcccccHHHHHHHHHHHHhh
Confidence             1123466788888899999999999988888765

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.59  E-value=0.0027  Score=47.67  Aligned_cols=87  Identities=14%  Similarity=0.100  Sum_probs=68.8

Q ss_pred             HHHHHHHHccCcchHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhhhHHH
Q 020587          124 VIPLVVKSLKNPRSAVCKTAIMTAADIFSAYNDRMIDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPILLLPK  203 (324)
Q Consensus       124 iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~~~m~~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~ll~~  203 (324)
                      .+..+++.+++....|-..|+.+++.+.          -...++.|+..+.+.+..||..|-.+|..|    .....++.
T Consensus        23 ~~~~L~~~l~d~~~~vR~~a~~~L~~~~----------~~~~~~~L~~~l~d~~~~VR~~a~~aL~~i----~~~~~~~~   88 (111)
T d1te4a_          23 AFEPLLESLSNEDWRIRGAAAWIIGNFQ----------DERAVEPLIKLLEDDSGFVRSGAARSLEQI----GGERVRAA   88 (111)
T ss_dssp             THHHHHHGGGCSCHHHHHHHHHHHGGGC----------SHHHHHHHHHHHHHCCTHHHHHHHHHHHHH----CSHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHhcc----------hhhhHHHHHhhhccchhHHHHHHHHHHHHh----CccchHHH
Confidence            3455678889999999999998887542          123456666666777889999999999875    56788999


Q ss_pred             HhhhccCCCHHHHHHHHHHHH
Q 020587          204 LQPYLKNRNPRIRAKASMCFS  224 (324)
Q Consensus       204 L~~~~~hKNp~VR~~aa~~L~  224 (324)
                      |...+++.++.||..+...|.
T Consensus        89 L~~ll~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          89 MEKLAETGTGFARKVAVNYLE  109 (111)
T ss_dssp             HHHHTTSCCTHHHHHHHHHGG
T ss_pred             HHHHHcCCCHHHHHHHHHHHH
Confidence            999999999999999887654

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.76  E-value=0.048  Score=47.24  Aligned_cols=104  Identities=14%  Similarity=0.066  Sum_probs=76.9

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChhh-------hHHHHhhhccCCCHHHHHHHHHHHHhhccccccc--ch
Q 020587          165 LLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPIL-------LLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVE--GI  235 (324)
Q Consensus       165 ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~-------ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~--~i  235 (324)
                      .+|.|++....++.-++..|..+|..++..-...+       .+|.|...++|.|+.+|..++..|.++...-...  .+
T Consensus         3 ~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~i   82 (457)
T d1xm9a1           3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET   82 (457)
T ss_dssp             CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred             CHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            47889988888889999999999999886544322       3677888999999999999999999887542221  12


Q ss_pred             hh-ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 020587          236 KE-YGIDKLIQVAASQLSDQLPESREAARTLLLELQS  271 (324)
Q Consensus       236 ~~-~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~  271 (324)
                      .. .+++.++..   +..+.++++|..|-.++..|..
T Consensus        83 ~~~g~v~~li~~---l~~~~~~~~~~~a~~~l~~l~~  116 (457)
T d1xm9a1          83 RRQNGIREAVSL---LRRTGNAEIQKQLTGLLWNLSS  116 (457)
T ss_dssp             HHTTCHHHHHHH---HTTCCCHHHHHHHHHHHHHHHT
T ss_pred             HHCCChHHHHHH---HhccCcHHHHHHHHHHHHHHHh
Confidence            22 245554443   3467889999999988887654

>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: Hrs
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=93.84  E-value=0.11  Score=41.41  Aligned_cols=82  Identities=13%  Similarity=0.142  Sum_probs=62.2

Q ss_pred             ChhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccC-CCHHHHHHHHHHHHHHHHHhh
Q 020587          196 SPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSD-QLPESREAARTLLLELQSVYE  274 (324)
Q Consensus       196 s~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D-~~pEvR~~AR~~l~~L~~~~~  274 (324)
                      .+...+..|..-++|+||.+...+..+|..|+++-|..--....-..+++.+.+++.. ....||+....++......|+
T Consensus        39 ~~k~a~ral~krl~~~n~~v~l~aL~LLd~~vkNcG~~f~~~i~s~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~  118 (145)
T d1dvpa1          39 TPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAFR  118 (145)
T ss_dssp             CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHTT
T ss_pred             cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHccchHHHHHHhhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhC
Confidence            4566888888889999999999999999999999887633333344556666666643 367899999999888777776


Q ss_pred             hcC
Q 020587          275 KSH  277 (324)
Q Consensus       275 ~~a  277 (324)
                      ...
T Consensus       119 ~~~  121 (145)
T d1dvpa1         119 SSD  121 (145)
T ss_dssp             TCS
T ss_pred             CCc
Confidence            443

>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.60  E-value=0.19  Score=39.94  Aligned_cols=78  Identities=10%  Similarity=0.022  Sum_probs=63.6

Q ss_pred             hhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccC------CCHHHHHHHHHHHHHHH
Q 020587          197 PILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSD------QLPESREAARTLLLELQ  270 (324)
Q Consensus       197 ~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D------~~pEvR~~AR~~l~~L~  270 (324)
                      |...+..|..-++|+||.+...+..+|..|+++-|..-.....-..+++.+.+++.+      .+++||+-...++....
T Consensus        36 ~k~a~ral~krl~~~n~~~~l~aL~LLe~~vkNcG~~fh~evask~Fl~~l~~li~~k~~~~~~~~~Vk~kil~li~~Wa  115 (143)
T d1mhqa_          36 PTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWT  115 (143)
T ss_dssp             HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHH
Confidence            444777788888999999999999999999999888744445677888888888875      47889999999887777


Q ss_pred             HHhh
Q 020587          271 SVYE  274 (324)
Q Consensus       271 ~~~~  274 (324)
                      ..|+
T Consensus       116 ~~f~  119 (143)
T d1mhqa_         116 VWFP  119 (143)
T ss_dssp             HHCT
T ss_pred             HHcC
Confidence            7775

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.30  E-value=0.32  Score=47.45  Aligned_cols=175  Identities=13%  Similarity=0.115  Sum_probs=114.6

Q ss_pred             HHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhh-----------hhHHhhHHH
Q 020587           96 WVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYN-----------DRMIDLLDP  164 (324)
Q Consensus        96 W~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~-----------~~m~~~~d~  164 (324)
                      ...+..++..+-+.+..-+   ...+..++..++..+.+.--.|...||.++..++....           ..+.|+++.
T Consensus       472 ~~lr~~~~~~i~~~~~~~~---~~~~~~~~~~l~~~L~~~~~~V~~~a~~al~~~~~~~~~~~~~~~~~~~~~l~p~l~~  548 (959)
T d1wa5c_         472 IILRVDAIKYIYTFRNQLT---KAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEI  548 (959)
T ss_dssp             HHHHHHHHHHHHHTGGGSC---HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHH
T ss_pred             HHHHHHHHHHHHHHHhhcc---HHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhhcccccchhhccHHHHHhhHHH
Confidence            3355556665555544321   23466788888899999888888899999998886432           457789999


Q ss_pred             HHHHHHHHhcCC-----hHHHHHHHHHHHHHHHhhcCh------hhhHHHH----hhhcc-CCCHHHHHHHHHHHHhhcc
Q 020587          165 LLVQLLLKSSQD-----KRFVCEAAEKALVAMTTWVSP------ILLLPKL----QPYLK-NRNPRIRAKASMCFSRSVP  228 (324)
Q Consensus       165 ll~~LL~Ka~~s-----k~FI~e~A~~AL~amv~~vs~------~~ll~~L----~~~~~-hKNp~VR~~aa~~L~~~v~  228 (324)
                      ++..|+....+.     +.+..+..-.++..++.....      ..+++.|    ....+ ..++..+..+..++..++.
T Consensus       549 ll~~L~~~l~~~~~~~~~~~~~~~ll~~l~~ii~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~e~l~~l~~  628 (959)
T d1wa5c_         549 LLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILN  628 (959)
T ss_dssp             HHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH
Confidence            998888776443     223344566666666655432      1233333    23333 3568888888888988887


Q ss_pred             cccccchhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhh
Q 020587          229 RLGVEGIKEYGIDKLIQVAASQLSDQLPESREAARTLLLELQSVYE  274 (324)
Q Consensus       229 ~~g~~~i~~~~~~~ll~~l~~~L~D~~pEvR~~AR~~l~~L~~~~~  274 (324)
                      ..+++..... .+.+++.+...++....+....+-.++..+....+
T Consensus       629 ~~~~~~~~~l-~~~l~p~i~~~~~~~~~~~~~~~~~l~~~~~~~~~  673 (959)
T d1wa5c_         629 YTQRQNLPLL-VDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQSA  673 (959)
T ss_dssp             TSCGGGHHHH-HHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHCS
T ss_pred             hcCchhHHHH-HHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCC
Confidence            6666544333 57778888877777777777777777766655543

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.70  E-value=5.9  Score=37.95  Aligned_cols=152  Identities=11%  Similarity=0.036  Sum_probs=92.8

Q ss_pred             CCHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHHhhhhHHHHHHHHccCcc--hHHHHH-HHHHHHHHHHHh
Q 020587           78 EDIDTSVKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLDILGDVIPLVVKSLKNPR--SAVCKT-AIMTAADIFSAY  154 (324)
Q Consensus        78 ~dpe~~L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~~L~~iv~~l~~~vksLR--S~Vsk~-A~~tl~dLf~~L  154 (324)
                      .||+.-+..-..  .+..|..+..+.+.++.++.++++.+.+.+...+..+.....+..  .-..+. ++..++.+....
T Consensus       359 ~dp~~~~~~~~~--~~~~~~~r~~a~~ll~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~e~~~~~~~al~~~~  436 (959)
T d1wa5c_         359 DDPIEYIRRDLE--GSDTDTRRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAING  436 (959)
T ss_dssp             TCHHHHHHHHHH--C----CHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSS
T ss_pred             cchHHHHHHHhh--hcccccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhhccCCccchHHHHHHHHHHHHHHhhh
Confidence            467665544433  234566788888899999888877665544444443333322211  112222 333444433211


Q ss_pred             ------------hhhHHhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhcChh---hhHHHHhhhccCCCHHHHHHH
Q 020587          155 ------------NDRMIDLLDPLLVQLLLKSSQDKRFVCEAAEKALVAMTTWVSPI---LLLPKLQPYLKNRNPRIRAKA  219 (324)
Q Consensus       155 ------------~~~m~~~~d~ll~~LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~---~ll~~L~~~~~hKNp~VR~~a  219 (324)
                                  ...+.+++...+...+........+++..+-.++........+.   .+++.+...+++.++.||..+
T Consensus       437 ~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~~~lr~~~~~~i~~~~~~~~~~~~~~~~~~l~~~L~~~~~~V~~~a  516 (959)
T d1wa5c_         437 NITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQLIELMPILATFLQTDEYVVYTYA  516 (959)
T ss_dssp             CCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred             hhhhhhhhcccchhhHHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhCCCchhHHHHH
Confidence                        01244555555555555555557899998888888887776653   366778889999999999999


Q ss_pred             HHHHHhhccccc
Q 020587          220 SMCFSRSVPRLG  231 (324)
Q Consensus       220 a~~L~~~v~~~g  231 (324)
                      +..+..++....
T Consensus       517 ~~al~~~~~~~~  528 (959)
T d1wa5c_         517 AITIEKILTIRE  528 (959)
T ss_dssp             HHHHHHHTTCBS
T ss_pred             HHHHHHHHHhhc
Confidence            999999887554

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.04  E-value=1.8  Score=36.63  Aligned_cols=144  Identities=13%  Similarity=0.010  Sum_probs=93.9

Q ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHHHHhHcHHHHHH-hhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHHhh---hhHH
Q 020587           84 VKTLVAGLDSKDWVVVCEALNNVRRLSIFHKEAMLD-ILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSAYN---DRMI  159 (324)
Q Consensus        84 L~~~l~~L~s~dW~~r~eaL~~LRrLa~~h~~~l~~-~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~L~---~~m~  159 (324)
                      +..++..|+++|=+.+..|...|..|+..+++.-.. .-...++.+++.+++....|-+.|+.++..|...-.   ..+.
T Consensus         4 ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~i~   83 (457)
T d1xm9a1           4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETR   83 (457)
T ss_dssp             HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            457888889999999999999999998755432211 122357788899999999999999999999973222   2221


Q ss_pred             hhHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHhhcChhhh-----HHHHh----------------hhccCCCHHHHH
Q 020587          160 DLLDPLLVQLLLKSS-QDKRFVCEAAEKALVAMTTWVSPILL-----LPKLQ----------------PYLKNRNPRIRA  217 (324)
Q Consensus       160 ~~~d~ll~~LL~Ka~-~sk~FI~e~A~~AL~amv~~vs~~~l-----l~~L~----------------~~~~hKNp~VR~  217 (324)
                      ..  ..++.|+.... ..+.-+++.+..+|..+.........     ++.+.                ....+.++.++.
T Consensus        84 ~~--g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  161 (457)
T d1xm9a1          84 RQ--NGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFF  161 (457)
T ss_dssp             HT--TCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHH
T ss_pred             HC--CChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHHHHhcccHHHHHHHHhhhhhhhcchhhhhcccccHHHHH
Confidence            11  12455555443 34567888899999888775433221     11111                122456788999


Q ss_pred             HHHHHHHhhccc
Q 020587          218 KASMCFSRSVPR  229 (324)
Q Consensus       218 ~aa~~L~~~v~~  229 (324)
                      .++..+..+...
T Consensus       162 ~a~~~l~~~~~~  173 (457)
T d1xm9a1         162 NATGCLRNLSSA  173 (457)
T ss_dssp             HHHHHHHHHTTS
T ss_pred             HHHHHHHHHhcC
Confidence            888888776653

>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.07  E-value=0.92  Score=35.78  Aligned_cols=78  Identities=13%  Similarity=0.058  Sum_probs=60.6

Q ss_pred             hhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccC------CCHHHHHHHHHHHHHHH
Q 020587          197 PILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSD------QLPESREAARTLLLELQ  270 (324)
Q Consensus       197 ~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D------~~pEvR~~AR~~l~~L~  270 (324)
                      +...+..|..-++|+||.+...+..+|..|+++-|..--....-..+++.+.+.+.+      .+++||+-...++....
T Consensus        43 ~k~a~r~l~krl~~~~~~~~l~aL~LLe~~vkNCG~~f~~evas~~Fl~~L~kli~~k~~~~~~~~~Vk~kil~li~~W~  122 (145)
T d1ujka_          43 PPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWT  122 (145)
T ss_dssp             HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHTSCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHH
Confidence            344677788888999999999999999999999888744444667777788888765      46789988888886665


Q ss_pred             HHhh
Q 020587          271 SVYE  274 (324)
Q Consensus       271 ~~~~  274 (324)
                      ..|+
T Consensus       123 ~~fp  126 (145)
T d1ujka_         123 VGLP  126 (145)
T ss_dssp             HHCT
T ss_pred             HHCC
Confidence            5554

>d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.15  E-value=0.47  Score=37.84  Aligned_cols=78  Identities=12%  Similarity=0.086  Sum_probs=59.2

Q ss_pred             hhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHHHhccCC------CHHHHHHHHHHHHHHH
Q 020587          197 PILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAASQLSDQ------LPESREAARTLLLELQ  270 (324)
Q Consensus       197 ~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~~~L~D~------~pEvR~~AR~~l~~L~  270 (324)
                      +...+..|..-++|+||.+...+..+|..|+++-|..--....-..+++.+.+++.+.      +++|++-...++....
T Consensus        37 ~k~a~rai~krl~~~~~~~~l~aL~LLe~~vkNCG~~F~~evask~Fl~~l~kli~~k~~~~~~~~~Vk~kil~ll~~Wa  116 (151)
T d1juqa_          37 PQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWT  116 (151)
T ss_dssp             HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccHHHHHHHhhHHHHHHHHHHHcccCCCCcccHHHHHHHHHHHHHHH
Confidence            3446677787889999999999999999999998886333344566777787777653      5788888888877666


Q ss_pred             HHhh
Q 020587          271 SVYE  274 (324)
Q Consensus       271 ~~~~  274 (324)
                      ..|+
T Consensus       117 ~~f~  120 (151)
T d1juqa_         117 MALP  120 (151)
T ss_dssp             HHCT
T ss_pred             HHcc
Confidence            6654

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=86.34  E-value=0.31  Score=41.75  Aligned_cols=65  Identities=22%  Similarity=0.116  Sum_probs=37.4

Q ss_pred             HHHHhcCChHHHHHHHHHHHHHHHhhcChhhhHHHHhhhccCCCHHHHHHHHHHHHhhcccccccchhhccHHHHHHHHH
Q 020587          169 LLLKSSQDKRFVCEAAEKALVAMTTWVSPILLLPKLQPYLKNRNPRIRAKASMCFSRSVPRLGVEGIKEYGIDKLIQVAA  248 (324)
Q Consensus       169 LL~Ka~~sk~FI~e~A~~AL~amv~~vs~~~ll~~L~~~~~hKNp~VR~~aa~~L~~~v~~~g~~~i~~~~~~~ll~~l~  248 (324)
                      |+..+.+....|+..+-..|       ++    +.|...+++.++.||..++..+                    -+.+.
T Consensus       167 L~~l~~D~d~~VR~~aa~~L-------~~----~~L~~l~~D~d~~VR~aaae~~--------------------~~~ll  215 (233)
T d1lrva_         167 LGLMTQDPEPEVRRIVASRL-------RG----DDLLELLHDPDWTVRLAAVEHA--------------------SLEAL  215 (233)
T ss_dssp             GGGSTTCSSHHHHHHHHHHC-------CG----GGGGGGGGCSSHHHHHHHHHHS--------------------CHHHH
T ss_pred             HHHHccCCCHHHHHHHHHhc-------Cc----HHHHHHHhCCCHHHHHHHHHhc--------------------cHHHH
Confidence            33444555666666554433       21    3445555677777776665321                    11233


Q ss_pred             HhccCCCHHHHHHHHH
Q 020587          249 SQLSDQLPESREAART  264 (324)
Q Consensus       249 ~~L~D~~pEvR~~AR~  264 (324)
                      +.|.|.+++||..+.+
T Consensus       216 ~~L~D~d~~VR~aA~~  231 (233)
T d1lrva_         216 RELDEPDPEVRLAIAG  231 (233)
T ss_dssp             HHCCCCCHHHHHHHHC
T ss_pred             HHhCCCCHHHHHHHHH
Confidence            4678999999998863

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.95  E-value=12  Score=33.04  Aligned_cols=104  Identities=11%  Similarity=0.072  Sum_probs=70.9

Q ss_pred             HHHhhcCCCCHHHHHHHHHHHHHHHhHcH----HHHHHhhhhHHHHHHHHccCcchHHHHHHHHHHHHHHHH--hhhhHH
Q 020587           86 TLVAGLDSKDWVVVCEALNNVRRLSIFHK----EAMLDILGDVIPLVVKSLKNPRSAVCKTAIMTAADIFSA--YNDRMI  159 (324)
Q Consensus        86 ~~l~~L~s~dW~~r~eaL~~LRrLa~~h~----~~l~~~L~~iv~~l~~~vksLRS~Vsk~A~~tl~dLf~~--L~~~m~  159 (324)
                      .+|+.+.....+-..+|..+++.|...|+    +++..++..+.....+.+.+.+=...|.++..+++|...  -..-|.
T Consensus       159 ~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrRqSlKLLgelLldr~N~~vm~  238 (330)
T d1upka_         159 DFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHNFTIMT  238 (330)
T ss_dssp             HHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHSGGGHHHHH
T ss_pred             HHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhhHHHHHH
Confidence            55666778889999999999999998886    556677888888888999999999999999999988632  223333


Q ss_pred             hhH--HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 020587          160 DLL--DPLLVQLLLKSSQDKRFVCEAAEKALV  189 (324)
Q Consensus       160 ~~~--d~ll~~LL~Ka~~sk~FI~e~A~~AL~  189 (324)
                      .|+  ..-+..+++...+..+-|+-+|=....
T Consensus       239 ~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFK  270 (330)
T d1upka_         239 KYISKPENLKLMMNLLRDKSRNIQFEAFHVFK  270 (330)
T ss_dssp             HHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             HHhCCHHHHHHHHHHhcCchhhHHHHhhhHhh
Confidence            443  233333444444444444444433333