Citrus Sinensis ID: 020623
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 323 | 2.2.26 [Sep-21-2011] | |||||||
| Q94F09 | 440 | Protein disulfide-isomera | yes | no | 0.981 | 0.720 | 0.639 | 1e-121 | |
| Q0JD42 | 423 | Protein disulfide isomera | yes | no | 0.910 | 0.695 | 0.603 | 1e-104 | |
| Q0E0I1 | 425 | Protein disulfide isomera | no | no | 0.904 | 0.687 | 0.544 | 2e-86 | |
| Q54EN4 | 513 | Protein disulfide-isomera | yes | no | 0.538 | 0.339 | 0.313 | 1e-08 | |
| Q67IX6 | 563 | Protein disulfide isomera | no | no | 0.541 | 0.310 | 0.287 | 4e-05 |
| >sp|Q94F09|PDI52_ARATH Protein disulfide-isomerase 5-2 OS=Arabidopsis thaliana GN=PDIL5-2 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 434 bits (1117), Expect = e-121, Method: Compositional matrix adjust.
Identities = 211/330 (63%), Positives = 267/330 (80%), Gaps = 13/330 (3%)
Query: 2 HGIPTEYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFGLDESV 61
HG+P EYYGPRKA+LLVRYLKKFVAPDV++L SD+ V +FVE+AGTFFP+FIGFGL+ES+
Sbjct: 115 HGVPMEYYGPRKADLLVRYLKKFVAPDVAVLESDSTVKEFVEDAGTFFPVFIGFGLNESI 174
Query: 62 MSNLALKYKKKAWFAVAKDFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEE 121
+S L KYKKKAWFAV+K+ SEDTMV YDFDK PALVA P+YNEH++FYGPF++ FLEE
Sbjct: 175 ISGLGRKYKKKAWFAVSKEVSEDTMVSYDFDKAPALVANHPTYNEHSVFYGPFEDGFLEE 234
Query: 122 FIKQNFLPLSVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVF 181
F+KQ+FLPL +PIN DTL LLKDD+RKIVL IVEDET E +KL L+AAA ANR+LVF
Sbjct: 235 FVKQSFLPLILPINHDTLKLLKDDERKIVLTIVEDETHESLEKLYKALRAAAHANRDLVF 294
Query: 182 CYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYLTVIGSESI-DEEDQGSQISRFLEG 240
YVG+KQF +F D+F +KK+ LPK+VVWDG+E Y V G E+I EED +Q+SRFLEG
Sbjct: 295 GYVGVKQFEEFVDSFHVDKKTNLPKIVVWDGDEEYDQVTGIETITQEEDHLTQVSRFLEG 354
Query: 241 YREGRTEQKKVAGPSIFGFVNSLIGIRSVYIIVFMVAMLMLLRTLGKDDEEPSRVGTS-- 298
YREGRTE+KK+ GPS GF+NS+IGIRSVYI+VF+VA++M+LR+LG+ EEP+ V T+
Sbjct: 355 YREGRTEKKKINGPSFMGFINSMIGIRSVYILVFLVAVIMMLRSLGQ-VEEPTGVRTATA 413
Query: 299 -----DQSEHARSTVSRAENDEYRSGEKED 323
DQ+ +TV E+ E++ +K++
Sbjct: 414 VRERVDQA----TTVPEDESSEHKPSDKKE 439
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Acts as a protein-folding catalyst that interacts with nascent polypeptides to catalyze the formation, isomerization, and reduction or oxidation of disulfide bonds. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0JD42|PDI52_ORYSJ Protein disulfide isomerase-like 5-2 OS=Oryza sativa subsp. japonica GN=PDIL5-2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 377 bits (969), Expect = e-104, Method: Compositional matrix adjust.
Identities = 178/295 (60%), Positives = 235/295 (79%), Gaps = 1/295 (0%)
Query: 1 MHGIPTEYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFGLDES 60
+HG+P EY G RKA+LLVR L KFVAPDVSIL SD+ + FVENAGT FP+FIGFG++ES
Sbjct: 124 IHGVPIEYTGSRKADLLVRNLNKFVAPDVSILESDSAIKSFVENAGTSFPMFIGFGVNES 183
Query: 61 VMSNLALKYKKKAWFAVAKDFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLE 120
+++ KYKK+AWFAVAKDFSED MV YDFDKVPALV+L P Y E ++FYGPF+ FLE
Sbjct: 184 LIAGYGGKYKKRAWFAVAKDFSEDFMVTYDFDKVPALVSLHPKYKEQSVFYGPFEGSFLE 243
Query: 121 EFIKQNFLPLSVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELV 180
+FI+Q+ LPL+VPIN +TL +L DD RK+VLAI+ED+++E S +LV L++AA+ANR+LV
Sbjct: 244 DFIRQSLLPLTVPINTETLKMLDDDDRKVVLAILEDDSDETSSQLVKVLRSAANANRDLV 303
Query: 181 FCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEG 240
F YVGIKQ+ +F +TF+ +K S+LPK++VWD NE Y V GSE ++E DQ SQIS+FLEG
Sbjct: 304 FGYVGIKQWDEFVETFDISKSSQLPKLIVWDRNEEYEVVEGSEKLEEGDQASQISQFLEG 363
Query: 241 YREGRTEQKKVAGPSIFGFVNSLIGIRSVYIIVFMVAML-MLLRTLGKDDEEPSR 294
YR GRT +KKV+GPS GF+NSL+ + S+YI++ + A+L +++ G+DD R
Sbjct: 364 YRAGRTTKKKVSGPSFMGFLNSLVSLNSLYILICVFALLGVMIYFTGQDDTPQVR 418
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Acts as a protein-folding catalyst that interacts with nascent polypeptides to catalyze the formation, isomerization, and reduction or oxidation of disulfide bonds. May play a role in storage protein biogenesis. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q0E0I1|PDI53_ORYSJ Protein disulfide isomerase-like 5-3 OS=Oryza sativa subsp. japonica GN=PDIL5-3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 319 bits (817), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 165/303 (54%), Positives = 220/303 (72%), Gaps = 11/303 (3%)
Query: 2 HGIPTEYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFGLDESV 61
HG PTEY G RKA+LLV LKK VAPDVS+L SD+ + FVE+AG FPLF+GFG+DES+
Sbjct: 129 HGTPTEYTGSRKADLLVENLKKLVAPDVSVLESDSAIKSFVEDAGMGFPLFLGFGVDESL 188
Query: 62 MSNLALKYKKKAWFAVAKDFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDE-EFLE 120
+ KYK +AWF+VAKDFSED MV YDFDKVPALV++ P Y E +IFYGPFD+ FLE
Sbjct: 189 IVEYGAKYKNRAWFSVAKDFSEDMMVFYDFDKVPALVSVNPKYREQSIFYGPFDDGAFLE 248
Query: 121 EFIKQNFLPLSVPINQDTLNLLKDDKRKIVLAIVE-DETEEKSQKLVTTLKAAASANREL 179
+FI+ + LPL VP+N++T+ +L DD RK+VL I++ DE++E S +L+ L++AASANR+L
Sbjct: 249 DFIRNSLLPLVVPMNRETVKMLNDDGRKVVLMILQDDESDENSPRLIKVLRSAASANRDL 308
Query: 180 VFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLE 239
VF YVG+ Q+ +F +TF+ K S+LP M+VWD E Y V GSE ++E D GSQISRFLE
Sbjct: 309 VFGYVGVNQWEEFTETFDV-KSSELPTMIVWDKKEEYEIVEGSERLEEGDYGSQISRFLE 367
Query: 240 GYREGRTEQKKVAGPSIFGFVNSLIGIRSVYI---IVFMVAMLMLLRTLGKDDEEPSRVG 296
GYR GRT +KKV S +L+G+ +VYI +V ++ +LM G++D+ P +
Sbjct: 368 GYRAGRTIKKKVGDRS-----PTLLGVNAVYILVFLVAVLVLLMYFSGQGEEDQRPRQRA 422
Query: 297 TSD 299
D
Sbjct: 423 HED 425
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Acts as a protein-folding catalyst that interacts with nascent polypeptides to catalyze the formation, isomerization, and reduction or oxidation of disulfide bonds. May play a role in storage protein biogenesis. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q54EN4|PDI2_DICDI Protein disulfide-isomerase 2 OS=Dictyostelium discoideum GN=pdi2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 96/188 (51%), Gaps = 14/188 (7%)
Query: 8 YYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFGLDE--SVMSNL 65
Y G R + +V+ L++ + P +S L S+ ++ +F + F D+ + S L
Sbjct: 129 YEGDRTTKSIVQTLEEELKPTISTLESNEDIEEFKKQHPISVVGFFDNDHDDRFKLFSEL 188
Query: 66 ALKYKKKAWFAVA--KDFSEDTMVLYDFDKVPALVALQPSYNEHNIFY-GPFDEEFLEEF 122
A KK A FAV KDFS++ + + P +V + S++E + + G FD E L +F
Sbjct: 189 AGNNKKSAKFAVVIDKDFSKEHV-----ESTPNVVLFR-SFDEPTVAHKGEFDSESLIKF 242
Query: 123 IKQNFLPLSVPINQDTLNLLKDDKRKIVLA-IVEDETEEKSQKLVTTLKAAASANRELVF 181
IK N +PL IN++T K + + LA + D T++ +Q L K A S VF
Sbjct: 243 IKGNSVPLLGEINRNTYK--KYESIAVPLAYLFIDSTQDNTQVLEDVKKIATSQKGNAVF 300
Query: 182 CYVGIKQF 189
C+V +K+F
Sbjct: 301 CWVDMKKF 308
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Participates in the folding of proteins containing disulfide bonds, may be involved in glycosylation, prolyl hydroxylation and triglyceride transfer. Dictyostelium discoideum (taxid: 44689) EC: 5 EC: . EC: 3 EC: . EC: 4 EC: . EC: 1 |
| >sp|Q67IX6|PDI14_ORYSJ Protein disulfide isomerase-like 1-4 OS=Oryza sativa subsp. japonica GN=PDIL1-4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 93/195 (47%), Gaps = 20/195 (10%)
Query: 1 MHGIPTEYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFV--ENAGTFFPL--FIGFG 56
+ G+P +Y G R E +V ++ K +AP V + + E + E+ L G
Sbjct: 155 IDGVPKDYNGARTKEAIVSWVNKKLAPGVQNITTVDEAEKILTGEDKAILAVLDSLSGAH 214
Query: 57 LDE-SVMSNL--ALKYKKKAWFAVAKDFSEDTMVLYDFDKVPALVALQPSYNEHNIFY-G 112
DE + S L A+ + + + VAK F D K P+LV L+ E FY G
Sbjct: 215 SDEIAAASRLEDAINFYQTSNPDVAKLFHLDPAA-----KRPSLVLLKKQEEEKLTFYDG 269
Query: 113 PFDEEFLEEFIKQNFLPLSVPINQDTLNLLKDD--KRKIVLAIVEDETEEKSQKLVTTLK 170
PF + +F+ N LPL + Q+T + D+ K++I+L +V +E S K + K
Sbjct: 270 PFKASAIADFVSANKLPLVNTLTQETAPSIFDNPIKKQILLFVVANE----SSKFLPIFK 325
Query: 171 AAASANR-ELVFCYV 184
A+ + + +L+F +V
Sbjct: 326 EASKSFKGKLLFVFV 340
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Acts as a protein-folding catalyst that interacts with nascent polypeptides to catalyze the formation, isomerization, and reduction or oxidation of disulfide bonds. May play a role in storage protein biogenesis. Oryza sativa subsp. japonica (taxid: 39947) EC: 5 EC: . EC: 3 EC: . EC: 4 EC: . EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 323 | ||||||
| 255586469 | 433 | protein disulfide isomerase, putative [R | 0.990 | 0.739 | 0.687 | 1e-129 | |
| 224135931 | 419 | predicted protein [Populus trichocarpa] | 0.984 | 0.758 | 0.705 | 1e-128 | |
| 225470790 | 438 | PREDICTED: protein disulfide-isomerase 5 | 0.993 | 0.732 | 0.661 | 1e-125 | |
| 321266521 | 422 | protein disulfide isomerase-like protein | 0.990 | 0.758 | 0.671 | 1e-125 | |
| 297846626 | 440 | hypothetical protein ARALYDRAFT_473690 [ | 0.993 | 0.729 | 0.647 | 1e-120 | |
| 18399786 | 440 | protein PDI-like 5-2 [Arabidopsis thalia | 0.981 | 0.720 | 0.639 | 1e-119 | |
| 8778373 | 473 | F15O4.20 [Arabidopsis thaliana] | 0.990 | 0.676 | 0.645 | 1e-119 | |
| 224145166 | 398 | predicted protein [Populus trichocarpa] | 0.863 | 0.701 | 0.720 | 1e-116 | |
| 449528051 | 369 | PREDICTED: protein disulfide-isomerase 5 | 0.996 | 0.872 | 0.642 | 1e-113 | |
| 449441752 | 441 | PREDICTED: protein disulfide-isomerase 5 | 0.996 | 0.730 | 0.642 | 1e-113 |
| >gi|255586469|ref|XP_002533878.1| protein disulfide isomerase, putative [Ricinus communis] gi|223526179|gb|EEF28509.1| protein disulfide isomerase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 468 bits (1204), Expect = e-129, Method: Compositional matrix adjust.
Identities = 222/323 (68%), Positives = 275/323 (85%), Gaps = 3/323 (0%)
Query: 1 MHGIPTEYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFGLDES 60
MHG+P +YYGPRKA+LLVRYLKKFVAPDV++L+SD ++DFV+ AG FP+FIGFG++E+
Sbjct: 114 MHGVPVDYYGPRKADLLVRYLKKFVAPDVAVLDSDVAITDFVQEAGMSFPIFIGFGVNET 173
Query: 61 VMSNLALKYKKKAWFAVAKDFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLE 120
++SNL LKYKKKAWF+VA DFSE MV YDFDKVPALVA+ PSYNE +IFYGPF+E+FLE
Sbjct: 174 MVSNLGLKYKKKAWFSVANDFSEGVMVQYDFDKVPALVAVHPSYNEQSIFYGPFEEKFLE 233
Query: 121 EFIKQNFLPLSVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELV 180
+FIKQNFLP +VP+N DTL +LKDD+RKIVL I+EDE++EKSQKL+ LKAAASANR+LV
Sbjct: 234 DFIKQNFLPPAVPMNHDTLKILKDDERKIVLTIMEDESDEKSQKLIKLLKAAASANRDLV 293
Query: 181 FCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEG 240
F YVG+KQ+ FADTF NKK+KLPKMVVW+G+E YL VIG ES+++EDQGSQIS FLEG
Sbjct: 294 FGYVGVKQWEGFADTFGGNKKTKLPKMVVWNGDEEYLLVIGLESLEDEDQGSQISLFLEG 353
Query: 241 YREGRTEQKKVAGPSIFGFVNSLIGIRSVYIIVFMVAMLMLLRTLGKDDEEPSRVGTSDQ 300
YR+G+T QK+++GPS G++NSLIGIR+VYIIVFMVAMLML++T+GK EEP RVGT DQ
Sbjct: 354 YRKGQTIQKQLSGPSFMGYINSLIGIRTVYIIVFMVAMLMLIQTIGK--EEPLRVGTRDQ 411
Query: 301 SEHARSTVSRAENDEYRSGEKED 323
E S+ + Y G+K+D
Sbjct: 412 VEDVSSSEPESST-AYGPGDKQD 433
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224135931|ref|XP_002327339.1| predicted protein [Populus trichocarpa] gi|222835709|gb|EEE74144.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 464 bits (1194), Expect = e-128, Method: Compositional matrix adjust.
Identities = 228/323 (70%), Positives = 285/323 (88%), Gaps = 5/323 (1%)
Query: 1 MHGIPTEYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFGLDES 60
MHG+PTEYYGPRKAELLVR+L+KFVAPDV +LNSD+ + +FVE AGT FP+FIGFGL+E+
Sbjct: 102 MHGVPTEYYGPRKAELLVRFLRKFVAPDVVVLNSDSAIREFVEEAGTHFPIFIGFGLNET 161
Query: 61 VMSNLALKYKKKAWFAVAKDFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLE 120
++SNLA+KYKKKAWF+VA DFS+D MV YDFDK+P +V++ PSY++H+IFYGPF+EEFLE
Sbjct: 162 LISNLAIKYKKKAWFSVASDFSDDVMVQYDFDKIPTVVSIHPSYDDHSIFYGPFEEEFLE 221
Query: 121 EFIKQNFLPLSVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELV 180
EFI+QNFLPL+VPIN DTL +LKDD+RKIVL I+EDE+EEKSQKL+ TLKAAASANR LV
Sbjct: 222 EFIEQNFLPLAVPINYDTLKVLKDDQRKIVLTILEDESEEKSQKLIKTLKAAASANRNLV 281
Query: 181 FCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEG 240
F YVG+KQ+A+FA+TF A K +KLPKM+VWDG E YL+VIGSESI+EEDQGSQIS+FL G
Sbjct: 282 FGYVGVKQWAEFAETFGA-KGTKLPKMIVWDGGEEYLSVIGSESIEEEDQGSQISQFLAG 340
Query: 241 YREGRTEQKKVAGPSIFGFVNSLIGIRSVYIIVFMVAMLMLLRTLGKDDEEPSRVGTSDQ 300
YREG+TE+ +++GPS+ G++NSLIG+R+VYIIVF+VAML+L+R + K EEP VGT DQ
Sbjct: 341 YREGKTERNRISGPSLMGYLNSLIGVRTVYIIVFLVAMLILIRHISK--EEPLTVGTGDQ 398
Query: 301 SEHARSTVSRAENDEYRSGEKED 323
EHA S S AE+ +YR G+K+D
Sbjct: 399 VEHATS--SEAESSDYRPGDKQD 419
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225470790|ref|XP_002269656.1| PREDICTED: protein disulfide-isomerase 5-2 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 453 bits (1166), Expect = e-125, Method: Compositional matrix adjust.
Identities = 215/325 (66%), Positives = 273/325 (84%), Gaps = 4/325 (1%)
Query: 1 MHGIPTEYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFGLDES 60
+ G+P +YYGPRKA+LLVR+LKKFVAPDVS+L SD+ +S FVE AGT FP++IGFGL+ES
Sbjct: 116 IRGVPMDYYGPRKADLLVRFLKKFVAPDVSVLVSDSAISSFVEAAGTHFPIYIGFGLNES 175
Query: 61 VMSNLALKYKKKAWFAVAKDFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLE 120
++SNLA+KYKKKAWF+VAKDFSED MV YDFDKVPALV+L PSYNEH++FYGPFD EFLE
Sbjct: 176 MISNLAIKYKKKAWFSVAKDFSEDVMVAYDFDKVPALVSLHPSYNEHSVFYGPFDGEFLE 235
Query: 121 EFIKQNFLPLSVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELV 180
+F+KQ PL +PIN DTL LLKDD RKI L V+DE +EKS+KL+ LKAAASANR+LV
Sbjct: 236 DFMKQTLFPLVLPINYDTLKLLKDDDRKIFLTFVDDELDEKSKKLINLLKAAASANRDLV 295
Query: 181 FCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEG 240
F +VGIKQ+ +FAD+F ANKK+KLPKMVVWDG+ Y VIGSES DE DQGSQI+RF+EG
Sbjct: 296 FGFVGIKQWGEFADSFGANKKTKLPKMVVWDGDNQYFEVIGSESFDEIDQGSQITRFIEG 355
Query: 241 YREGRTEQKKVAGPSIFGFVNSLIGIRSVYIIVFMVAMLMLLRTLGKDDEEPSRVGTS-D 299
Y+EGRT +KK+ GPS+ G++NSLIGIR+VYIIVF+VA++M+++++ K EEP +G+ D
Sbjct: 356 YKEGRTVEKKIGGPSLIGYINSLIGIRTVYIIVFVVAVMMIIQSINK--EEPLTIGSGED 413
Query: 300 QSEHA-RSTVSRAENDEYRSGEKED 323
Q++ A S+++ +EYR +KED
Sbjct: 414 QTDQAWSSSLTDESREEYRPRDKED 438
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|321266521|gb|ADW78597.1| protein disulfide isomerase-like protein [Hibiscus cannabinus] | Back alignment and taxonomy information |
|---|
Score = 453 bits (1166), Expect = e-125, Method: Compositional matrix adjust.
Identities = 217/323 (67%), Positives = 271/323 (83%), Gaps = 3/323 (0%)
Query: 1 MHGIPTEYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFGLDES 60
MHG+ EY GPRKA+LLV+YLKKFVAPDVSIL+SD+ ++DFVE AGTFFP++IGFGL+E+
Sbjct: 103 MHGVSMEYSGPRKADLLVQYLKKFVAPDVSILSSDSAINDFVEAAGTFFPIYIGFGLNET 162
Query: 61 VMSNLALKYKKKAWFAVAKDFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLE 120
V+SNLA+KYKKKAWF+VAKDFS+D MVLYDFDKVP+LVAL PSY + ++FYGPF++ FL
Sbjct: 163 VVSNLAVKYKKKAWFSVAKDFSDDAMVLYDFDKVPSLVALHPSYKQQSVFYGPFEDTFLG 222
Query: 121 EFIKQNFLPLSVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELV 180
+FIKQN LPL VP+N DTL LLKD+ RKIVL I+ DE E++SQ L+ L+AAASANR+LV
Sbjct: 223 DFIKQNLLPLVVPLNHDTLKLLKDEDRKIVLTIIADENEDQSQNLIKLLRAAASANRDLV 282
Query: 181 FCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEG 240
F YVG+KQ+ DFAD FEAN+KSKLPKM+VW+G+ YL+V+G ES+D EDQGSQISRFLEG
Sbjct: 283 FSYVGVKQWEDFADKFEANEKSKLPKMIVWNGDVEYLSVVGVESLDNEDQGSQISRFLEG 342
Query: 241 YREGRTEQKKVAGPSIFGFVNSLIGIRSVYIIVFMVAMLMLLRTLGKDDEEPSRVGTSDQ 300
YREGRTE+K V GPS F++SLIGIRSVYIIVF+VA++ML++++GK+DE R G+
Sbjct: 343 YREGRTERKTVKGPSFMDFIHSLIGIRSVYIIVFIVAIMMLIQSIGKEDES-VRDGSRGA 401
Query: 301 SEHARSTVSRAENDEYRSGEKED 323
+ A S AE+ YR +KED
Sbjct: 402 VDGAESF--GAESSRYRPEKKED 422
|
Source: Hibiscus cannabinus Species: Hibiscus cannabinus Genus: Hibiscus Family: Malvaceae Order: Malvales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297846626|ref|XP_002891194.1| hypothetical protein ARALYDRAFT_473690 [Arabidopsis lyrata subsp. lyrata] gi|297337036|gb|EFH67453.1| hypothetical protein ARALYDRAFT_473690 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust.
Identities = 211/326 (64%), Positives = 263/326 (80%), Gaps = 5/326 (1%)
Query: 2 HGIPTEYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFGLDESV 61
HG+P EYYGPRKA+LLVRYLKKFVAPDV++L SD+ V +FVE+AGTFFP+FIGFGL+ES+
Sbjct: 115 HGVPMEYYGPRKADLLVRYLKKFVAPDVAVLESDSAVKEFVEDAGTFFPVFIGFGLNESL 174
Query: 62 MSNLALKYKKKAWFAVAKDFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEE 121
+S L KYKKKAWFAVAKD SEDTMV YDFDK PALV P+YNEH++FYGPF++ FLEE
Sbjct: 175 ISGLGGKYKKKAWFAVAKDVSEDTMVSYDFDKAPALVVKHPTYNEHSVFYGPFEDGFLEE 234
Query: 122 FIKQNFLPLSVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVF 181
F+KQ+F PL +PINQDTL LLKDD+RKIVL IVEDET E KL+ L+AAA ANR+LVF
Sbjct: 235 FVKQSFFPLILPINQDTLKLLKDDERKIVLTIVEDETHESLDKLIKALRAAAHANRDLVF 294
Query: 182 CYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYLTVIGSESI-DEEDQGSQISRFLEG 240
YVG+KQF +F D+F +KK+ LPK+VVWDG+E Y V G E+I EED +Q+SRFLEG
Sbjct: 295 GYVGVKQFEEFVDSFHVDKKTNLPKIVVWDGDEEYDQVTGIETISQEEDHLTQVSRFLEG 354
Query: 241 YREGRTEQKKVAGPSIFGFVNSLIGIRSVYIIVFMVAMLMLLRTLGKDDEEPSRVGTSDQ 300
YREGRTE+KK+ GPS GF+NS+IGIRSVYIIVF+VA++M+LR+LG+ EEP+ V T+
Sbjct: 355 YREGRTEKKKINGPSFMGFINSMIGIRSVYIIVFLVAVIMMLRSLGQ-VEEPAGVRTAPA 413
Query: 301 SEH---ARSTVSRAENDEYRSGEKED 323
S ++V+ E E+ +K++
Sbjct: 414 SRERVDQTTSVTEGETSEHTPSDKKE 439
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18399786|ref|NP_564462.1| protein PDI-like 5-2 [Arabidopsis thaliana] gi|75332171|sp|Q94F09.1|PDI52_ARATH RecName: Full=Protein disulfide-isomerase 5-2; Short=AtPDIL5-2; AltName: Full=Protein disulfide-isomerase 7-1; Short=AtPDIL7-1; AltName: Full=Protein disulfide-isomerase 8; Short=PDI8; Flags: Precursor gi|14423498|gb|AAK62431.1|AF386986_1 Unknown protein [Arabidopsis thaliana] gi|31376373|gb|AAP49513.1| At1g35620 [Arabidopsis thaliana] gi|332193697|gb|AEE31818.1| protein PDI-like 5-2 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust.
Identities = 211/330 (63%), Positives = 267/330 (80%), Gaps = 13/330 (3%)
Query: 2 HGIPTEYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFGLDESV 61
HG+P EYYGPRKA+LLVRYLKKFVAPDV++L SD+ V +FVE+AGTFFP+FIGFGL+ES+
Sbjct: 115 HGVPMEYYGPRKADLLVRYLKKFVAPDVAVLESDSTVKEFVEDAGTFFPVFIGFGLNESI 174
Query: 62 MSNLALKYKKKAWFAVAKDFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEE 121
+S L KYKKKAWFAV+K+ SEDTMV YDFDK PALVA P+YNEH++FYGPF++ FLEE
Sbjct: 175 ISGLGRKYKKKAWFAVSKEVSEDTMVSYDFDKAPALVANHPTYNEHSVFYGPFEDGFLEE 234
Query: 122 FIKQNFLPLSVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVF 181
F+KQ+FLPL +PIN DTL LLKDD+RKIVL IVEDET E +KL L+AAA ANR+LVF
Sbjct: 235 FVKQSFLPLILPINHDTLKLLKDDERKIVLTIVEDETHESLEKLYKALRAAAHANRDLVF 294
Query: 182 CYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYLTVIGSESI-DEEDQGSQISRFLEG 240
YVG+KQF +F D+F +KK+ LPK+VVWDG+E Y V G E+I EED +Q+SRFLEG
Sbjct: 295 GYVGVKQFEEFVDSFHVDKKTNLPKIVVWDGDEEYDQVTGIETITQEEDHLTQVSRFLEG 354
Query: 241 YREGRTEQKKVAGPSIFGFVNSLIGIRSVYIIVFMVAMLMLLRTLGKDDEEPSRVGTS-- 298
YREGRTE+KK+ GPS GF+NS+IGIRSVYI+VF+VA++M+LR+LG+ EEP+ V T+
Sbjct: 355 YREGRTEKKKINGPSFMGFINSMIGIRSVYILVFLVAVIMMLRSLGQ-VEEPTGVRTATA 413
Query: 299 -----DQSEHARSTVSRAENDEYRSGEKED 323
DQ+ +TV E+ E++ +K++
Sbjct: 414 VRERVDQA----TTVPEDESSEHKPSDKKE 439
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|8778373|gb|AAF79381.1|AC007887_40 F15O4.20 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust.
Identities = 208/322 (64%), Positives = 258/322 (80%), Gaps = 2/322 (0%)
Query: 2 HGIPTEYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFGLDESV 61
HG+P EYYGPRKA+LLVRYLKKFVAPDV++L SD+ V +FVE+AGTFFP+FIGFGL+ES+
Sbjct: 115 HGVPMEYYGPRKADLLVRYLKKFVAPDVAVLESDSTVKEFVEDAGTFFPVFIGFGLNESI 174
Query: 62 MSNLALKYKKKAWFAVAKDFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEE 121
+S L KYKKKAWFAV+K+ SEDTMV YDFDK PALVA P+YNEH++FYGPF++ FLEE
Sbjct: 175 ISGLGRKYKKKAWFAVSKEVSEDTMVSYDFDKAPALVANHPTYNEHSVFYGPFEDGFLEE 234
Query: 122 FIKQNFLPLSVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVF 181
F+KQ+FLPL +PIN DTL LLKDD+RKIVL IVEDET E +KL L+AAA ANR+LVF
Sbjct: 235 FVKQSFLPLILPINHDTLKLLKDDERKIVLTIVEDETHESLEKLYKALRAAAHANRDLVF 294
Query: 182 CYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYLTVIGSESI-DEEDQGSQISRFLEG 240
YVG+KQF +F D+F +KK+ LPK+VVWDG+E Y V G E+I EED +Q+SRFLEG
Sbjct: 295 GYVGVKQFEEFVDSFHVDKKTNLPKIVVWDGDEEYDQVTGIETITQEEDHLTQVSRFLEG 354
Query: 241 YREGRTEQKKVAGPSIFGFVNSLIGIRSVYIIVFMVAMLMLLRTLGKDDEEPSRVGTSDQ 300
YREGRTE+KK+ GPS GF+NS+IGIRSVYI+VF+VA++M+LR+LG+ EEP+ V T+
Sbjct: 355 YREGRTEKKKINGPSFMGFINSMIGIRSVYILVFLVAVIMMLRSLGQ-VEEPTGVRTATA 413
Query: 301 SEHARSTVSRAENDEYRSGEKE 322
+ DE + G E
Sbjct: 414 VRERVDQATTVPEDESKFGPGE 435
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224145166|ref|XP_002325550.1| predicted protein [Populus trichocarpa] gi|222862425|gb|EEE99931.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust.
Identities = 201/279 (72%), Positives = 252/279 (90%)
Query: 1 MHGIPTEYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFGLDES 60
MHG+PT+YYGPRKAELLV +L+KFVAPDV+ILNSD+ + +FVE AGT FP+FIGFGL+E+
Sbjct: 120 MHGVPTDYYGPRKAELLVCFLRKFVAPDVTILNSDSAIREFVEEAGTHFPIFIGFGLNET 179
Query: 61 VMSNLALKYKKKAWFAVAKDFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLE 120
VMSNLA+KYKKKAWF+VA DFS+D MV YDFDK+PALV++ PSYN+H +FYGPF+EEF+E
Sbjct: 180 VMSNLAIKYKKKAWFSVASDFSDDVMVQYDFDKIPALVSIHPSYNDHTVFYGPFEEEFME 239
Query: 121 EFIKQNFLPLSVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELV 180
EFI QN LPL+VPIN +TL +LKDD+RKIVL I+ED++EEKSQ L+ LKAAASANR+LV
Sbjct: 240 EFITQNSLPLAVPINSETLKVLKDDQRKIVLTILEDDSEEKSQNLIKILKAAASANRDLV 299
Query: 181 FCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEG 240
F +VG+KQ+ +F +TF ANK++KLPKM+VWDG+E YL+VIGSESI+EEDQGSQIS+FL G
Sbjct: 300 FGFVGVKQWEEFTETFGANKETKLPKMIVWDGDEEYLSVIGSESIEEEDQGSQISQFLAG 359
Query: 241 YREGRTEQKKVAGPSIFGFVNSLIGIRSVYIIVFMVAML 279
YR GRTE+ +V+GPS+ G+++SLIGIR+VYIIVF+VAML
Sbjct: 360 YRGGRTERNRVSGPSLLGYISSLIGIRTVYIIVFLVAML 398
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449528051|ref|XP_004171020.1| PREDICTED: protein disulfide-isomerase 5-2-like, partial [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust.
Identities = 210/327 (64%), Positives = 265/327 (81%), Gaps = 5/327 (1%)
Query: 1 MHGIPTEYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFGLDES 60
MHG+P +YYGPRKAELL RYLKKFVAPDVS+L SD+ +++FVE AG +FP+++GFGLDES
Sbjct: 44 MHGVPVDYYGPRKAELLARYLKKFVAPDVSVLESDSSINEFVEAAGPYFPIYLGFGLDES 103
Query: 61 VMSNLALKYKKKAWFAVAKDFSEDTMVLYDFDKVPALVALQPSY-NEHNIFYGPFDEEFL 119
V+S +KYKKKAWF+VAK FSED MV YDFDKVPALV++ P+Y NE +IFYGPF+E+FL
Sbjct: 104 VISKFGIKYKKKAWFSVAKGFSEDIMVSYDFDKVPALVSIHPNYNNERSIFYGPFEEQFL 163
Query: 120 EEFIKQNFLPLSVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANREL 179
EEFIKQ+ PL +PIN DTL LLKDD RKI L IVEDE E++++KL+ LKAAASANR+L
Sbjct: 164 EEFIKQSLFPLVLPINYDTLKLLKDDDRKIALTIVEDEDEDQTKKLINLLKAAASANRDL 223
Query: 180 VFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLE 239
VF YVG KQ+ +FAD+F +KK+ LPKMV+WDG ++YL V GSE+I D S+IS+F+E
Sbjct: 224 VFAYVGAKQWGEFADSF-GDKKTTLPKMVIWDGEDDYLMVTGSETIVGNDHASEISKFIE 282
Query: 240 GYREGRTEQKKVAGPSIFGFVNSLIGIRSVYIIVFMVAMLMLLRTLGKDDEEPSRVGTS- 298
GYREGRTE+++VAGP+I GF+NSLIGIR++YIIV +VA +ML + L KDD E RV TS
Sbjct: 283 GYREGRTEKRRVAGPAILGFINSLIGIRTIYIIVIIVAGIMLYQNLTKDDSEYPRVDTSA 342
Query: 299 -DQSEH-ARSTVSRAENDEYRSGEKED 323
DQ E + S+ E EY++G+KED
Sbjct: 343 RDQVEQTSSSSAPEVERSEYKAGDKED 369
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449441752|ref|XP_004138646.1| PREDICTED: protein disulfide-isomerase 5-2-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust.
Identities = 210/327 (64%), Positives = 265/327 (81%), Gaps = 5/327 (1%)
Query: 1 MHGIPTEYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFGLDES 60
MHG+P +YYGPRKAELL RYLKKFVAPDVS+L SD+ +++FVE AG +FP+++GFGLDES
Sbjct: 116 MHGVPVDYYGPRKAELLARYLKKFVAPDVSVLESDSSINEFVEAAGPYFPIYLGFGLDES 175
Query: 61 VMSNLALKYKKKAWFAVAKDFSEDTMVLYDFDKVPALVALQPSY-NEHNIFYGPFDEEFL 119
V+S +KYKKKAWF+VAK FSED MV YDFDKVPALV++ P+Y NE +IFYGPF+E+FL
Sbjct: 176 VISKFGIKYKKKAWFSVAKGFSEDIMVSYDFDKVPALVSIHPNYNNERSIFYGPFEEQFL 235
Query: 120 EEFIKQNFLPLSVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANREL 179
EEFIKQ+ PL +PIN DTL LLKDD RKI L IVEDE E++++KL+ LKAAASANR+L
Sbjct: 236 EEFIKQSLFPLVLPINYDTLKLLKDDDRKIALTIVEDEDEDQTKKLINLLKAAASANRDL 295
Query: 180 VFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLE 239
VF YVG KQ+ +FAD+F +KK+ LPKMV+WDG ++YL V GSE+I D S+IS+F+E
Sbjct: 296 VFAYVGAKQWGEFADSF-GDKKTTLPKMVIWDGEDDYLMVTGSETIVGNDHASEISKFIE 354
Query: 240 GYREGRTEQKKVAGPSIFGFVNSLIGIRSVYIIVFMVAMLMLLRTLGKDDEEPSRVGTS- 298
GYREGRTE+++VAGP+I GF+NSLIGIR++YIIV +VA +ML + L KDD E RV TS
Sbjct: 355 GYREGRTEKRRVAGPAILGFINSLIGIRTIYIIVIIVAGIMLYQNLTKDDSEYPRVDTSA 414
Query: 299 -DQSEH-ARSTVSRAENDEYRSGEKED 323
DQ E + S+ E EY++G+KED
Sbjct: 415 RDQVEQTSSSSAPEVERSEYKAGDKED 441
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 323 | ||||||
| TAIR|locus:2014681 | 440 | PDIL5-2 "PDI-like 5-2" [Arabid | 0.990 | 0.727 | 0.649 | 1.6e-111 | |
| DICTYBASE|DDB_G0291434 | 513 | pdi2 "protein disulfide isomer | 0.557 | 0.350 | 0.309 | 3e-11 | |
| RGD|3244 | 509 | P4hb "prolyl 4-hydroxylase, be | 0.712 | 0.451 | 0.248 | 1.8e-06 | |
| UNIPROTKB|P12244 | 508 | P12244 "Dolichyl-diphosphoolig | 0.708 | 0.450 | 0.247 | 3e-06 | |
| ZFIN|ZDB-GENE-080610-1 | 509 | p4hb "procollagen-proline, 2-o | 0.551 | 0.349 | 0.270 | 6.4e-06 | |
| UNIPROTKB|P05307 | 510 | P4HB "Protein disulfide-isomer | 0.702 | 0.445 | 0.265 | 6.5e-06 | |
| UNIPROTKB|A6H7J6 | 510 | P4HB "Prolyl 4-hydroxylase, be | 0.702 | 0.445 | 0.265 | 8.3e-06 | |
| TAIR|locus:2082712 | 579 | PDIL1-3 "PDI-like 1-3" [Arabid | 0.628 | 0.350 | 0.255 | 1.7e-05 | |
| TAIR|locus:2036906 | 501 | PDIL1-1 "AT1G21750" [Arabidops | 0.724 | 0.467 | 0.238 | 1.8e-05 | |
| UNIPROTKB|P07237 | 508 | P4HB "Protein disulfide-isomer | 0.702 | 0.446 | 0.261 | 5e-05 |
| TAIR|locus:2014681 PDIL5-2 "PDI-like 5-2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1101 (392.6 bits), Expect = 1.6e-111, P = 1.6e-111
Identities = 213/328 (64%), Positives = 269/328 (82%)
Query: 2 HGIPTEYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFGLDESV 61
HG+P EYYGPRKA+LLVRYLKKFVAPDV++L SD+ V +FVE+AGTFFP+FIGFGL+ES+
Sbjct: 115 HGVPMEYYGPRKADLLVRYLKKFVAPDVAVLESDSTVKEFVEDAGTFFPVFIGFGLNESI 174
Query: 62 MSNLALKYKKKAWFAVAKDFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEE 121
+S L KYKKKAWFAV+K+ SEDTMV YDFDK PALVA P+YNEH++FYGPF++ FLEE
Sbjct: 175 ISGLGRKYKKKAWFAVSKEVSEDTMVSYDFDKAPALVANHPTYNEHSVFYGPFEDGFLEE 234
Query: 122 FIKQNFLPLSVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVF 181
F+KQ+FLPL +PIN DTL LLKDD+RKIVL IVEDET E +KL L+AAA ANR+LVF
Sbjct: 235 FVKQSFLPLILPINHDTLKLLKDDERKIVLTIVEDETHESLEKLYKALRAAAHANRDLVF 294
Query: 182 CYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYLTVIGSESI-DEEDQGSQISRFLEG 240
YVG+KQF +F D+F +KK+ LPK+VVWDG+E Y V G E+I EED +Q+SRFLEG
Sbjct: 295 GYVGVKQFEEFVDSFHVDKKTNLPKIVVWDGDEEYDQVTGIETITQEEDHLTQVSRFLEG 354
Query: 241 YREGRTEQKKVAGPSIFGFVNSLIGIRSVYIIVFMVAMLMLLRTLGKDDEEPSRVGTS-- 298
YREGRTE+KK+ GPS GF+NS+IGIRSVYI+VF+VA++M+LR+LG+ EEP+ V T+
Sbjct: 355 YREGRTEKKKINGPSFMGFINSMIGIRSVYILVFLVAVIMMLRSLGQV-EEPTGVRTATA 413
Query: 299 --DQSEHARSTVSRAENDEYR-SGEKED 323
++ + A +TV E+ E++ S +KED
Sbjct: 414 VRERVDQA-TTVPEDESSEHKPSDKKED 440
|
|
| DICTYBASE|DDB_G0291434 pdi2 "protein disulfide isomerase" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 181 (68.8 bits), Expect = 3.0e-11, P = 3.0e-11
Identities = 60/194 (30%), Positives = 98/194 (50%)
Query: 2 HGIPTEYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFGLDE-- 59
+G Y G R + +V+ L++ + P +S L S+ ++ +F + F D+
Sbjct: 123 NGKAEPYEGDRTTKSIVQTLEEELKPTISTLESNEDIEEFKKQHPISVVGFFDNDHDDRF 182
Query: 60 SVMSNLALKYKKKAWFAVA--KDFSEDTMVLYDFDKVPALVALQPSYNEHNIFY-GPFDE 116
+ S LA KK A FAV KDFS++ + + P +V + S++E + + G FD
Sbjct: 183 KLFSELAGNNKKSAKFAVVIDKDFSKEHV-----ESTPNVVLFR-SFDEPTVAHKGEFDS 236
Query: 117 EFLEEFIKQNFLPLSVPINQDTLNLLKDDKRKIVLA-IVEDETEEKSQKLVTTLKAAASA 175
E L +FIK N +PL IN++T K + + LA + D T++ +Q L K A S
Sbjct: 237 ESLIKFIKGNSVPLLGEINRNTYK--KYESIAVPLAYLFIDSTQDNTQVLEDVKKIATSQ 294
Query: 176 NRELVFCYVGIKQF 189
VFC+V +K+F
Sbjct: 295 KGNAVFCWVDMKKF 308
|
|
| RGD|3244 P4hb "prolyl 4-hydroxylase, beta polypeptide" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 139 (54.0 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 62/249 (24%), Positives = 103/249 (41%)
Query: 5 PTEYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAG-TFFPLFIGFGLDESVMS 63
P EY R+A+ +V +LKK P + L+ A V+++ T F G D +
Sbjct: 115 PKEYTAGREADDIVNWLKKRTGPAATTLSDTAAAESLVDSSEVTVIGFFKDAGSDSAKQF 174
Query: 64 NLALKYKKKAWFAVAKDFSEDTMVLYDFDKVPALVALQPSYNE-HNIFYGPFDEEFLEEF 122
LA + F + + D Y DK V L ++E N F G +E L +F
Sbjct: 175 LLAAEAVDDIPFGITSN--SDVFSKYQLDKDG--VVLFKKFDEGRNNFEGEITKEKLLDF 230
Query: 123 IKQNFLPLSVPINQDTL-NLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVF 181
IK N LPL + + T + + + +L + + KL KAA +++F
Sbjct: 231 IKHNQLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKKAAEGFKGKILF 290
Query: 182 CYVGIKQFADFADT-----FEANKKSKLPKMVVWDGNENYLTVIGSESIDEEDQGSQISR 236
++ +D D F KK + P + + E +T ES +E +I++
Sbjct: 291 IFID----SDHTDNQRILEFFGLKKEECPAVRLITLEEE-MTKYKPES--DELTAEKITQ 343
Query: 237 FLEGYREGR 245
F + EG+
Sbjct: 344 FCHHFLEGK 352
|
|
| UNIPROTKB|P12244 P12244 "Dolichyl-diphosphooligosaccharide--protein glycotransferase" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 137 (53.3 bits), Expect = 3.0e-06, P = 3.0e-06
Identities = 62/251 (24%), Positives = 105/251 (41%)
Query: 5 PTEYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGF----GLDES 60
P EY R+A+ +V +LKK P + L+ A V+++ + IGF G D +
Sbjct: 112 PKEYTAGREADDIVNWLKKRTGPAATTLSDTAAAESLVDSSE--ITVIIGFFKDPGSDSA 169
Query: 61 VMSNLALKYKKKAWFAVAKDFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLE 120
LA F + + + D Y DK A+V + N F G +E L
Sbjct: 170 RQFLLAADAVDDVPFGI--NSNSDVYSKYQMDK-DAVVLFKKFAEGRNNFEGEITKEKLL 226
Query: 121 EFIKQNFLPLSVPINQDTL-NLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANREL 179
+FIK N LPL + + T + + + +L + + KL KAA ++
Sbjct: 227 DFIKHNNLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNLKKAADGFKGKI 286
Query: 180 VFCYVGIKQFADFADT-----FEANKKSKLPKMVVWDGNENYLTVIGSESIDEEDQGSQI 234
+F ++ +D D F KK + P + + +E LT E+ EE ++
Sbjct: 287 LFVFID----SDHTDNQRILEFFGLKKEECPAVRLITLDEE-LTKYKPET--EELTAEKL 339
Query: 235 SRFLEGYREGR 245
++F + EG+
Sbjct: 340 TQFCHHFLEGK 350
|
|
| ZFIN|ZDB-GENE-080610-1 p4hb "procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), beta polypeptide" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 134 (52.2 bits), Expect = 6.4e-06, P = 6.4e-06
Identities = 50/185 (27%), Positives = 78/185 (42%)
Query: 3 GIPTEYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFGLD-ESV 61
G P EY R+AE +V +LKK P + LN + + + IGF D ES
Sbjct: 109 GNPKEYSAGRQAEDIVSWLKKRTGPAATTLNDVMQAESIIADNEV---AVIGFFKDVESE 165
Query: 62 MSNLALKYKKKAWFAVAKDFSEDTMVLYDFDKVPALVALQPSYNE-HNIFYGPFDEEFLE 120
S +K +A + + D V F+ V L ++E N F G +E L
Sbjct: 166 DSKAFIK-TAEAVDDIPFGITSDDSVFAKFEVAKDSVVLFKKFDEGRNTFDGEVSKESLL 224
Query: 121 EFIKQNFLPLSVPINQDTL-NLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANREL 179
FIK N LPL + + T + D + +L V ++ K+ KAA ++
Sbjct: 225 NFIKANQLPLVIEFTEQTAPKIFGGDIKSHILMFVPKAAKDFQDKMDQFKKAAEGFKGKI 284
Query: 180 VFCYV 184
+F ++
Sbjct: 285 LFIFI 289
|
|
| UNIPROTKB|P05307 P4HB "Protein disulfide-isomerase" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 134 (52.2 bits), Expect = 6.5e-06, P = 6.5e-06
Identities = 67/252 (26%), Positives = 105/252 (41%)
Query: 5 PTEYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFGLD-ESVMS 63
P EY R+A+ +V +LKK P S L+ A VE++ IGF D ES +
Sbjct: 115 PKEYTAGREADDIVNWLKKRTGPAASTLSDGAAAEALVESSEV---AVIGFFKDMESDSA 171
Query: 64 N---LALKYKKKAWFAVAKDFSEDTMVLYDFDKVPALVALQPSYNE-HNIFYGPFDEEFL 119
LA + F + + D Y DK V L ++E N F G +E L
Sbjct: 172 KQFFLAAEVIDDIPFGITSN--SDVFSKYQLDKDG--VVLFKKFDEGRNNFEGEVTKEKL 227
Query: 120 EEFIKQNFLPLSVPINQDTL-NLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE 178
+FIK N LPL + + T + + + +L + + KL KAA S +
Sbjct: 228 LDFIKHNQLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYEGKLSNFKKAAESFKGK 287
Query: 179 LVFCYVGIKQFADFADT-----FEANKKSKLPKMVVWDGNENYLTVIGSESIDEEDQGSQ 233
++F ++ +D D F KK + P + + E +T ES +E +
Sbjct: 288 ILFIFID----SDHTDNQRILEFFGLKKEECPAVRLITLEEE-MTKYKPES--DELTAEK 340
Query: 234 ISRFLEGYREGR 245
I+ F + EG+
Sbjct: 341 ITEFCHRFLEGK 352
|
|
| UNIPROTKB|A6H7J6 P4HB "Prolyl 4-hydroxylase, beta subunit" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 133 (51.9 bits), Expect = 8.3e-06, P = 8.3e-06
Identities = 67/252 (26%), Positives = 105/252 (41%)
Query: 5 PTEYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFGLD-ESVMS 63
P EY R+A+ +V +LKK P S L+ A VE++ IGF D ES +
Sbjct: 115 PKEYTAGREADDIVNWLKKRTGPAASTLSDGAAAEALVESSEV---AVIGFFKDMESDSA 171
Query: 64 N---LALKYKKKAWFAVAKDFSEDTMVLYDFDKVPALVALQPSYNE-HNIFYGPFDEEFL 119
LA + F + + D Y DK V L ++E N F G +E L
Sbjct: 172 KQFLLAAEAIDDIPFGITSN--SDVFSKYQLDKDG--VVLFKKFDEGRNNFEGEVTKEKL 227
Query: 120 EEFIKQNFLPLSVPINQDTL-NLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE 178
+FIK N LPL + + T + + + +L + + KL KAA S +
Sbjct: 228 LDFIKHNQLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYEGKLSNFKKAAESFKGK 287
Query: 179 LVFCYVGIKQFADFADT-----FEANKKSKLPKMVVWDGNENYLTVIGSESIDEEDQGSQ 233
++F ++ +D D F KK + P + + E +T ES +E +
Sbjct: 288 ILFIFID----SDHTDNQRILEFFGLKKEECPAVRLITLEEE-MTKYKPES--DELTAEK 340
Query: 234 ISRFLEGYREGR 245
I+ F + EG+
Sbjct: 341 ITEFCHRFLEGK 352
|
|
| TAIR|locus:2082712 PDIL1-3 "PDI-like 1-3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 131 (51.2 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 55/215 (25%), Positives = 96/215 (44%)
Query: 8 YYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGF--GLDESVMSNL 65
Y G R + +V +LKK +P + + + E ++ V +A L GF L S L
Sbjct: 186 YEGERTKDGIVTWLKKKASPSIHNITTKEE-AERVLSAEP--KLVFGFLNSLVGSESEEL 242
Query: 66 ALKYKKKAWFAVAKDFSEDTMVLYDFD---KVPALVALQPSYNEHNIFYGPFDEEFLEEF 122
A + + + + S D L++ + K PALV L+ + F G F + + EF
Sbjct: 243 AAASRLEDDLSFYQTASPDIAKLFEIETQVKRPALVLLKKEEEKLARFDGNFTKTAIAEF 302
Query: 123 IKQNFLPLSVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFC 182
+ N +PL + ++ +L+ + K L I+ + E + L T + A S + VF
Sbjct: 303 VSANKVPLVINFTREGASLIFESSVKNQL-ILFAKANESEKHLPTLREVAKSFKGKFVFV 361
Query: 183 YVGIKQFADFADTFEA--NKKSKLPKMVVWDGNEN 215
YV + D+ + PK++V+ GNE+
Sbjct: 362 YVQMDN-EDYGEAVSGFFGVTGAAPKVLVYTGNED 395
|
|
| TAIR|locus:2036906 PDIL1-1 "AT1G21750" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 130 (50.8 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 62/260 (23%), Positives = 121/260 (46%)
Query: 7 EYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGT----FFPLFIGFGLDESVM 62
EY GPR+AE +V YLKK P + + S + S+ V + FP G D S M
Sbjct: 122 EYNGPREAEGIVTYLKKQSGPASAEIKSADDASEVVSDKKVVVVGIFPKLSGSEFD-SFM 180
Query: 63 SNLALKYKKKAWFAVAKDFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEF 122
+ +A K + + FA D + + +V L ++E + FD E LE+F
Sbjct: 181 A-IAEKLRSELDFAHTSDAK--LLPRGESSVTGPVVRLFKPFDEQFVDSKDFDGEALEKF 237
Query: 123 IKQNFLPLSVPINQDTLN---LLK---DDKRKIVLAIVEDETEEKSQKLVTTLKAAASAN 176
+K++ +PL ++D N ++K K +L I + T E ++ L + + A++N
Sbjct: 238 VKESSIPLITVFDKDPNNHPYVIKFFESTNTKAMLFI--NFTGEGAESLKSKYREVATSN 295
Query: 177 RELVFCYV-GIKQFADFADTFEANKKSKLPKMVVWDGNEN-YLTVIGSESIDEEDQGSQI 234
+ ++ G + + A + ++S++P +++ ++ YL + +D QI
Sbjct: 296 KGQGLSFLLGDAENSQGAFQYFGLEESQVPLIIIQTADDKKYLKT--NVEVD------QI 347
Query: 235 SRFLEGYREGRTEQKKVAGP 254
+++ +++G+ K + P
Sbjct: 348 ESWVKDFKDGKIAPHKKSQP 367
|
|
| UNIPROTKB|P07237 P4HB "Protein disulfide-isomerase" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 126 (49.4 bits), Expect = 5.0e-05, P = 5.0e-05
Identities = 66/252 (26%), Positives = 104/252 (41%)
Query: 5 PTEYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFGLDESVMSN 64
P EY R+A+ +V +LKK P + L A VE++ IGF D V S+
Sbjct: 113 PKEYTAGREADDIVNWLKKRTGPAATTLPDGAAAESLVESSEV---AVIGFFKD--VESD 167
Query: 65 LALKYKKKAWFAVAKDF----SEDTMVLYDFDKVPALVALQPSYNE-HNIFYGPFDEEFL 119
A ++ + A F + D Y DK V L ++E N F G +E L
Sbjct: 168 SAKQFLQAAEAIDDIPFGITSNSDVFSKYQLDKDG--VVLFKKFDEGRNNFEGEVTKENL 225
Query: 120 EEFIKQNFLPLSVPINQDTL-NLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE 178
+FIK N LPL + + T + + + +L + + KL AA S +
Sbjct: 226 LDFIKHNQLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGK 285
Query: 179 LVFCYVGIKQFADFADT-----FEANKKSKLPKMVVWDGNENYLTVIGSESIDEEDQGSQ 233
++F ++ +D D F KK + P + + E +T ES EE +
Sbjct: 286 ILFIFID----SDHTDNQRILEFFGLKKEECPAVRLITLEEE-MTKYKPES--EELTAER 338
Query: 234 ISRFLEGYREGR 245
I+ F + EG+
Sbjct: 339 ITEFCHRFLEGK 350
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q0JD42 | PDI52_ORYSJ | No assigned EC number | 0.6033 | 0.9102 | 0.6950 | yes | no |
| Q94F09 | PDI52_ARATH | No assigned EC number | 0.6393 | 0.9814 | 0.7204 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 323 | |||
| TIGR01130 | 462 | TIGR01130, ER_PDI_fam, protein disulfide isomerase | 1e-10 | |
| pfam13848 | 183 | pfam13848, Thioredoxin_6, Thioredoxin-like domain | 4e-07 | |
| PTZ00102 | 477 | PTZ00102, PTZ00102, disulphide isomerase; Provisio | 5e-05 |
| >gnl|CDD|233282 TIGR01130, ER_PDI_fam, protein disulfide isomerase, eukaryotic | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 1e-10
Identities = 55/257 (21%), Positives = 96/257 (37%), Gaps = 25/257 (9%)
Query: 5 PTEYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFGLDESVMSN 64
++Y GPR A+ +V+Y+KK P V + + A++ F+ + + IGF + + S
Sbjct: 89 VSDYNGPRDADGIVKYMKKQSGPAVKEIETVADLEAFLADD---DVVVIGF--FKDLDSE 143
Query: 65 LALKYKKKA------WFAVAKDFSEDTMVLYD-FDKVPALVALQPSYNEHNIFYG--PFD 115
L + A +F A F L + + + G D
Sbjct: 144 LNDTFLSVAEKLRDVYFFFAHSSDVAAFAKLGAFPDSVVLFKPKDEDEKFSKVDGEMDTD 203
Query: 116 EEFLEEFIKQNFLPLSVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASA 175
LE+FI+ LPL Q+T + +VL DE+ + ++L AA
Sbjct: 204 VSDLEKFIRAESLPLVGEFTQETAAKYFESGPLVVLYYNVDESLDPFEELRNRFLEAAKK 263
Query: 176 NR--ELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNEN--YLTVIGSESIDEEDQG 231
R + F + F + F K K P + + D N Y EE
Sbjct: 264 FRGKFVNFAVADEEDFGRELEYFGL-KAEKFPAVAIQDLEGNKKYPMD------QEEFSS 316
Query: 232 SQISRFLEGYREGRTEQ 248
+ F++ + +G+ +
Sbjct: 317 ENLEAFVKDFLDGKLKP 333
|
This model represents eukaryotic protein disulfide isomerases retained in the endoplasmic reticulum (ER) and closely related forms. Some members have been assigned alternative or additional functions such as prolyl 4-hydroxylase and dolichyl-diphosphooligosaccharide-protein glycotransferase. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs). Length = 462 |
| >gnl|CDD|222416 pfam13848, Thioredoxin_6, Thioredoxin-like domain | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 4e-07
Identities = 37/177 (20%), Positives = 65/177 (36%), Gaps = 21/177 (11%)
Query: 76 AVAKDFSEDTMVLYDFDK---------VPALVALQPSYNEHNIFY---GPFDEEFLEEFI 123
AK+ D FDK P ++ L ++E + Y + L++FI
Sbjct: 14 KAAKELRGDVRFGVTFDKEVAKKYGIKEPTIL-LFRKFDEKQVTYPGEDKTTFDDLKKFI 72
Query: 124 KQNFLPLSVPINQDTLNLLKDDKRKIVLAIVED-ETEEKSQKLVTTLKAAASANRELVFC 182
++N LPL + L + + ++L I +D E EK + V + A ++ F
Sbjct: 73 QKNSLPLVGEFTPENAEELFESGKPLLLFIKKDSEETEKLKNRV--EEVAKKFKGKINFA 130
Query: 183 YVGIKQFADFADTFEANKKSKLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLE 239
V K F + + LP +V+ D + + E + FL
Sbjct: 131 TVDGKSFGRVLEYLGL-SSADLPVIVIVDSASHKKKYFPEDEFSPES----LKEFLN 182
|
Length = 183 |
| >gnl|CDD|240266 PTZ00102, PTZ00102, disulphide isomerase; Provisional | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 5e-05
Identities = 53/254 (20%), Positives = 91/254 (35%), Gaps = 35/254 (13%)
Query: 3 GIPTEYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFGLDES-- 60
G P Y G R A+ +V ++KK P V+ + S +E+ + F+ F + +
Sbjct: 116 GNPVNYSGGRTADGIVSWIKKLTGPAVTEVESASEIKLIAKKI------FVAFYGEYTSK 169
Query: 61 ------VMSNLALKYKKKAWFAVAKDFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPF 114
+A K+++ A F V K ++ + + D E +
Sbjct: 170 DSELYKKFEEVADKHREHAKFFVKKHEGKNKIYVLHKD------------EEGVELFMGK 217
Query: 115 DEEFLEEFIKQNFLPLSVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAAS 174
+E LEEF+ PL IN + + +V T E K + ++ A
Sbjct: 218 TKEELEEFVSTESFPLFAEINAENYRRYISSGKDLVWFC---GTTEDYDKYKSVVRKVAR 274
Query: 175 ANRELV-FCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYLTVIGSESIDEEDQGSQ 233
RE F ++ +QF A E + P + YL ES D +
Sbjct: 275 KLREKYAFVWLDTEQFGSHAK--EHLLIEEFPGLAYQSPAGRYLLPPAKESFDSVE---A 329
Query: 234 ISRFLEGYREGRTE 247
+ F + G+ E
Sbjct: 330 LIEFFKDVEAGKVE 343
|
Length = 477 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 323 | |||
| KOG0190 | 493 | consensus Protein disulfide isomerase (prolyl 4-hy | 100.0 | |
| TIGR01130 | 462 | ER_PDI_fam protein disulfide isomerases, eukaryoti | 99.96 | |
| PTZ00102 | 477 | disulphide isomerase; Provisional | 99.96 | |
| PF01216 | 383 | Calsequestrin: Calsequestrin; InterPro: IPR001393 | 99.93 | |
| PF13848 | 184 | Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_ | 99.93 | |
| KOG0912 | 375 | consensus Thiol-disulfide isomerase and thioredoxi | 99.91 | |
| KOG4277 | 468 | consensus Uncharacterized conserved protein, conta | 99.69 | |
| cd03072 | 111 | PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second | 99.64 | |
| cd02983 | 130 | P5_C P5 family, C-terminal redox inactive TRX-like | 99.52 | |
| cd03073 | 111 | PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 s | 99.5 | |
| cd02982 | 103 | PDI_b'_family Protein Disulfide Isomerase (PDIb') | 99.23 | |
| cd03066 | 102 | PDI_b_Calsequestrin_middle PDIb family, Calsequest | 99.22 | |
| cd03069 | 104 | PDI_b_ERp57 PDIb family, ERp57 subfamily, first re | 99.2 | |
| cd02981 | 97 | PDI_b_family Protein Disulfide Isomerase (PDIb) fa | 99.14 | |
| PTZ00102 | 477 | disulphide isomerase; Provisional | 99.13 | |
| cd03068 | 107 | PDI_b_ERp72 PDIb family, ERp72 subfamily, first re | 99.01 | |
| TIGR01130 | 462 | ER_PDI_fam protein disulfide isomerases, eukaryoti | 98.88 | |
| KOG0190 | 493 | consensus Protein disulfide isomerase (prolyl 4-hy | 98.85 | |
| cd03074 | 120 | PDI_b'_Calsequestrin_C Protein Disulfide Isomerase | 98.79 | |
| TIGR02187 | 215 | GlrX_arch Glutaredoxin-like domain protein. This f | 98.44 | |
| PF13848 | 184 | Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_ | 98.42 | |
| PF00085 | 103 | Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio | 98.34 | |
| cd03071 | 116 | PDI_b'_NRX PDIb' family, NRX subgroup, redox inact | 98.27 | |
| cd03003 | 101 | PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfam | 98.19 | |
| PF01216 | 383 | Calsequestrin: Calsequestrin; InterPro: IPR001393 | 98.17 | |
| cd03007 | 116 | PDI_a_ERp29_N PDIa family, endoplasmic reticulum p | 98.16 | |
| PF00085 | 103 | Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio | 98.07 | |
| cd03004 | 104 | PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam | 98.02 | |
| cd03004 | 104 | PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam | 97.99 | |
| cd03001 | 103 | PDI_a_P5 PDIa family, P5 subfamily; composed of eu | 97.9 | |
| KOG0912 | 375 | consensus Thiol-disulfide isomerase and thioredoxi | 97.89 | |
| KOG0191 | 383 | consensus Thioredoxin/protein disulfide isomerase | 97.89 | |
| cd03001 | 103 | PDI_a_P5 PDIa family, P5 subfamily; composed of eu | 97.87 | |
| cd02983 | 130 | P5_C P5 family, C-terminal redox inactive TRX-like | 97.87 | |
| PRK10996 | 139 | thioredoxin 2; Provisional | 97.83 | |
| TIGR01126 | 102 | pdi_dom protein disulfide-isomerase domain. This m | 97.83 | |
| PRK09381 | 109 | trxA thioredoxin; Provisional | 97.75 | |
| cd03002 | 109 | PDI_a_MPD1_like PDI family, MPD1-like subfamily; c | 97.69 | |
| cd02989 | 113 | Phd_like_TxnDC9 Phosducin (Phd)-like family, Thior | 97.68 | |
| cd02996 | 108 | PDI_a_ERp44 PDIa family, endoplasmic reticulum pro | 97.68 | |
| cd03006 | 113 | PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamil | 97.68 | |
| cd03003 | 101 | PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfam | 97.64 | |
| cd03006 | 113 | PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamil | 97.62 | |
| cd02961 | 101 | PDI_a_family Protein Disulfide Isomerase (PDIa) fa | 97.62 | |
| cd02957 | 113 | Phd_like Phosducin (Phd)-like family; composed of | 97.61 | |
| cd02996 | 108 | PDI_a_ERp44 PDIa family, endoplasmic reticulum pro | 97.57 | |
| cd02995 | 104 | PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain | 97.57 | |
| cd03065 | 120 | PDI_b_Calsequestrin_N PDIb family, Calsequestrin s | 97.55 | |
| cd03002 | 109 | PDI_a_MPD1_like PDI family, MPD1-like subfamily; c | 97.53 | |
| cd03065 | 120 | PDI_b_Calsequestrin_N PDIb family, Calsequestrin s | 97.5 | |
| cd02998 | 105 | PDI_a_ERp38 PDIa family, endoplasmic reticulum pro | 97.47 | |
| PTZ00443 | 224 | Thioredoxin domain-containing protein; Provisional | 97.47 | |
| KOG0910 | 150 | consensus Thioredoxin-like protein [Posttranslatio | 97.43 | |
| TIGR01068 | 101 | thioredoxin thioredoxin. Several proteins, such as | 97.41 | |
| TIGR01126 | 102 | pdi_dom protein disulfide-isomerase domain. This m | 97.4 | |
| cd02965 | 111 | HyaE HyaE family; HyaE is also called HupG and Hox | 97.33 | |
| cd02997 | 104 | PDI_a_PDIR PDIa family, PDIR subfamily; composed o | 97.33 | |
| PF07912 | 126 | ERp29_N: ERp29, N-terminal domain; InterPro: IPR01 | 97.32 | |
| cd02994 | 101 | PDI_a_TMX PDIa family, TMX subfamily; composed of | 97.29 | |
| cd03005 | 102 | PDI_a_ERp46 PDIa family, endoplasmic reticulum pro | 97.28 | |
| cd02961 | 101 | PDI_a_family Protein Disulfide Isomerase (PDIa) fa | 97.24 | |
| cd02956 | 96 | ybbN ybbN protein family; ybbN is a hypothetical p | 97.23 | |
| cd02993 | 109 | PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfat | 97.22 | |
| cd02950 | 142 | TxlA TRX-like protein A (TxlA) family; TxlA was or | 97.22 | |
| cd02998 | 105 | PDI_a_ERp38 PDIa family, endoplasmic reticulum pro | 97.2 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 97.17 | |
| KOG0910 | 150 | consensus Thioredoxin-like protein [Posttranslatio | 97.15 | |
| cd02995 | 104 | PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain | 97.13 | |
| cd02993 | 109 | PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfat | 97.11 | |
| cd02963 | 111 | TRX_DnaJ TRX domain, DnaJ domain containing protei | 97.08 | |
| cd02987 | 175 | Phd_like_Phd Phosducin (Phd)-like family, Phd subf | 97.04 | |
| cd03070 | 91 | PDI_b_ERp44 PDIb family, ERp44 subfamily, first re | 97.04 | |
| PRK10996 | 139 | thioredoxin 2; Provisional | 97.03 | |
| cd02999 | 100 | PDI_a_ERp44_like PDIa family, endoplasmic reticulu | 97.02 | |
| PRK11509 | 132 | hydrogenase-1 operon protein HyaE; Provisional | 97.01 | |
| TIGR01068 | 101 | thioredoxin thioredoxin. Several proteins, such as | 96.99 | |
| PTZ00051 | 98 | thioredoxin; Provisional | 96.99 | |
| PRK09381 | 109 | trxA thioredoxin; Provisional | 96.95 | |
| cd02984 | 97 | TRX_PICOT TRX domain, PICOT (for PKC-interacting c | 96.95 | |
| cd03005 | 102 | PDI_a_ERp46 PDIa family, endoplasmic reticulum pro | 96.94 | |
| cd03067 | 112 | PDI_b_PDIR_N PDIb family, PDIR subfamily, N-termin | 96.94 | |
| cd02982 | 103 | PDI_b'_family Protein Disulfide Isomerase (PDIb') | 96.93 | |
| cd02947 | 93 | TRX_family TRX family; composed of two groups: Gro | 96.93 | |
| cd02948 | 102 | TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus | 96.92 | |
| cd02988 | 192 | Phd_like_VIAF Phosducin (Phd)-like family, Viral i | 96.84 | |
| cd02989 | 113 | Phd_like_TxnDC9 Phosducin (Phd)-like family, Thior | 96.84 | |
| cd02999 | 100 | PDI_a_ERp44_like PDIa family, endoplasmic reticulu | 96.83 | |
| cd02949 | 97 | TRX_NTR TRX domain, novel NADPH thioredoxin reduct | 96.81 | |
| cd02948 | 102 | TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus | 96.79 | |
| cd02994 | 101 | PDI_a_TMX PDIa family, TMX subfamily; composed of | 96.7 | |
| cd02997 | 104 | PDI_a_PDIR PDIa family, PDIR subfamily; composed o | 96.66 | |
| cd03007 | 116 | PDI_a_ERp29_N PDIa family, endoplasmic reticulum p | 96.64 | |
| cd02956 | 96 | ybbN ybbN protein family; ybbN is a hypothetical p | 96.58 | |
| cd03000 | 104 | PDI_a_TMX3 PDIa family, TMX3 subfamily; composed o | 96.55 | |
| cd02965 | 111 | HyaE HyaE family; HyaE is also called HupG and Hox | 96.54 | |
| PHA02278 | 103 | thioredoxin-like protein | 96.49 | |
| TIGR00424 | 463 | APS_reduc 5'-adenylylsulfate reductase, thioredoxi | 96.48 | |
| cd02975 | 113 | PfPDO_like_N Pyrococcus furiosus protein disulfide | 96.44 | |
| cd02962 | 152 | TMX2 TMX2 family; composed of proteins similar to | 96.35 | |
| cd02953 | 104 | DsbDgamma DsbD gamma family; DsbD gamma is the C-t | 96.35 | |
| PTZ00443 | 224 | Thioredoxin domain-containing protein; Provisional | 96.34 | |
| PRK11509 | 132 | hydrogenase-1 operon protein HyaE; Provisional | 96.28 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.26 | |
| cd02953 | 104 | DsbDgamma DsbD gamma family; DsbD gamma is the C-t | 96.25 | |
| PLN02309 | 457 | 5'-adenylylsulfate reductase | 96.21 | |
| KOG4277 | 468 | consensus Uncharacterized conserved protein, conta | 96.18 | |
| cd02954 | 114 | DIM1 Dim1 family; Dim1 is also referred to as U5 s | 96.17 | |
| PF07912 | 126 | ERp29_N: ERp29, N-terminal domain; InterPro: IPR01 | 96.16 | |
| TIGR00424 | 463 | APS_reduc 5'-adenylylsulfate reductase, thioredoxi | 96.15 | |
| cd02985 | 103 | TRX_CDSP32 TRX family, chloroplastic drought-induc | 96.13 | |
| PLN02309 | 457 | 5'-adenylylsulfate reductase | 96.1 | |
| TIGR03143 | 555 | AhpF_homolog putative alkyl hydroperoxide reductas | 96.06 | |
| cd02957 | 113 | Phd_like Phosducin (Phd)-like family; composed of | 96.03 | |
| KOG0191 | 383 | consensus Thioredoxin/protein disulfide isomerase | 95.79 | |
| cd03000 | 104 | PDI_a_TMX3 PDIa family, TMX3 subfamily; composed o | 95.77 | |
| cd02963 | 111 | TRX_DnaJ TRX domain, DnaJ domain containing protei | 95.72 | |
| PTZ00051 | 98 | thioredoxin; Provisional | 95.65 | |
| cd03072 | 111 | PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second | 95.63 | |
| cd02949 | 97 | TRX_NTR TRX domain, novel NADPH thioredoxin reduct | 95.49 | |
| cd02984 | 97 | TRX_PICOT TRX domain, PICOT (for PKC-interacting c | 95.27 | |
| cd02954 | 114 | DIM1 Dim1 family; Dim1 is also referred to as U5 s | 95.26 | |
| cd02987 | 175 | Phd_like_Phd Phosducin (Phd)-like family, Phd subf | 95.23 | |
| cd02950 | 142 | TxlA TRX-like protein A (TxlA) family; TxlA was or | 95.01 | |
| TIGR02187 | 215 | GlrX_arch Glutaredoxin-like domain protein. This f | 94.96 | |
| cd02992 | 114 | PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidas | 94.91 | |
| PHA02278 | 103 | thioredoxin-like protein | 94.87 | |
| cd02947 | 93 | TRX_family TRX family; composed of two groups: Gro | 94.82 | |
| cd02981 | 97 | PDI_b_family Protein Disulfide Isomerase (PDIb) fa | 94.7 | |
| PLN00410 | 142 | U5 snRNP protein, DIM1 family; Provisional | 94.67 | |
| cd02992 | 114 | PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidas | 94.66 | |
| cd03073 | 111 | PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 s | 94.62 | |
| cd02951 | 125 | SoxW SoxW family; SoxW is a bacterial periplasmic | 94.61 | |
| TIGR00411 | 82 | redox_disulf_1 small redox-active disulfide protei | 94.61 | |
| cd02985 | 103 | TRX_CDSP32 TRX family, chloroplastic drought-induc | 94.44 | |
| PF02114 | 265 | Phosducin: Phosducin; InterPro: IPR024253 The oute | 94.25 | |
| cd03066 | 102 | PDI_b_Calsequestrin_middle PDIb family, Calsequest | 94.23 | |
| PTZ00062 | 204 | glutaredoxin; Provisional | 94.01 | |
| cd03069 | 104 | PDI_b_ERp57 PDIb family, ERp57 subfamily, first re | 93.79 | |
| PLN00410 | 142 | U5 snRNP protein, DIM1 family; Provisional | 93.75 | |
| KOG0907 | 106 | consensus Thioredoxin [Posttranslational modificat | 93.21 | |
| cd02952 | 119 | TRP14_like Human TRX-related protein 14 (TRP14)-li | 92.87 | |
| PTZ00062 | 204 | glutaredoxin; Provisional | 92.78 | |
| cd03068 | 107 | PDI_b_ERp72 PDIb family, ERp72 subfamily, first re | 92.76 | |
| TIGR01295 | 122 | PedC_BrcD bacteriocin transport accessory protein, | 92.52 | |
| cd02986 | 114 | DLP Dim1 family, Dim1-like protein (DLP) subfamily | 92.34 | |
| KOG0907 | 106 | consensus Thioredoxin [Posttranslational modificat | 92.12 | |
| KOG0908 | 288 | consensus Thioredoxin-like protein [Posttranslatio | 92.08 | |
| cd02951 | 125 | SoxW SoxW family; SoxW is a bacterial periplasmic | 91.97 | |
| cd02975 | 113 | PfPDO_like_N Pyrococcus furiosus protein disulfide | 91.6 | |
| cd02986 | 114 | DLP Dim1 family, Dim1-like protein (DLP) subfamily | 91.55 | |
| cd02962 | 152 | TMX2 TMX2 family; composed of proteins similar to | 91.34 | |
| cd02988 | 192 | Phd_like_VIAF Phosducin (Phd)-like family, Viral i | 91.25 | |
| cd02955 | 124 | SSP411 TRX domain, SSP411 protein family; members | 91.14 | |
| TIGR01295 | 122 | PedC_BrcD bacteriocin transport accessory protein, | 90.61 | |
| PRK03147 | 173 | thiol-disulfide oxidoreductase; Provisional | 89.91 | |
| cd02973 | 67 | TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)- | 89.88 | |
| cd03026 | 89 | AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxid | 89.7 | |
| cd03067 | 112 | PDI_b_PDIR_N PDIb family, PDIR subfamily, N-termin | 89.52 | |
| PF02114 | 265 | Phosducin: Phosducin; InterPro: IPR024253 The oute | 88.5 | |
| KOG2603 | 331 | consensus Oligosaccharyltransferase, gamma subunit | 88.24 | |
| cd02966 | 116 | TlpA_like_family TlpA-like family; composed of Tlp | 86.98 | |
| PRK15317 | 517 | alkyl hydroperoxide reductase subunit F; Provision | 86.47 | |
| KOG1672 | 211 | consensus ATP binding protein [Posttranslational m | 86.37 | |
| TIGR03140 | 515 | AhpF alkyl hydroperoxide reductase, F subunit. Thi | 86.21 | |
| PF11009 | 105 | DUF2847: Protein of unknown function (DUF2847); In | 85.51 | |
| PRK14018 | 521 | trifunctional thioredoxin/methionine sulfoxide red | 84.11 | |
| cd02959 | 117 | ERp19 Endoplasmic reticulum protein 19 (ERp19) fam | 84.1 | |
| TIGR02740 | 271 | TraF-like TraF-like protein. This protein is relat | 83.44 | |
| PF13905 | 95 | Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_ | 83.31 | |
| TIGR03143 | 555 | AhpF_homolog putative alkyl hydroperoxide reductas | 82.61 | |
| TIGR00411 | 82 | redox_disulf_1 small redox-active disulfide protei | 82.44 | |
| PF13192 | 76 | Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZY | 81.73 | |
| cd02952 | 119 | TRP14_like Human TRX-related protein 14 (TRP14)-li | 81.44 | |
| cd02958 | 114 | UAS UAS family; UAS is a domain of unknown functio | 81.39 |
| >KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-40 Score=314.04 Aligned_cols=275 Identities=20% Similarity=0.292 Sum_probs=231.1
Q ss_pred CCc-ccccCCCCChHHHHHHHHHhcCCCceecCChHHHHHHHHhcCCcccEEEEecCC----hhHHHHHHHhhcCceeEE
Q 020623 2 HGI-PTEYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFGLD----ESVMSNLALKYKKKAWFA 76 (323)
Q Consensus 2 ~G~-~~eY~G~R~a~~Iv~~l~k~~~p~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~----~~~f~~~A~~~~~~~~F~ 76 (323)
||. +.+|+|+|++++||.||+++++|+++.|.+.++++.|+...+ +++||||.+ .+.|...|..+++++.|+
T Consensus 108 nG~~~~~Y~G~r~adgIv~wl~kq~gPa~~~l~~~~~a~~~l~~~~---~~vig~F~d~~~~~~~~~~~a~~l~~d~~F~ 184 (493)
T KOG0190|consen 108 NGRSAQDYNGPREADGIVKWLKKQSGPASKTLKTVDEAEEFLSKKD---VVVIGFFKDLESLAESFFDAASKLRDDYKFA 184 (493)
T ss_pred cCCcceeccCcccHHHHHHHHHhccCCCceecccHHHHHhhccCCc---eEEEEEecccccchHHHHHHHHhccccceee
Confidence 687 599999999999999999999999999999999999999977 479998763 346778888999999999
Q ss_pred eecccchhhHhhcCCCC--CCeEEEecCCCCCCccccCCCCHHHHHHHHHhhcCCCeeecChhhHHHhhcCCCcE-EEEE
Q 020623 77 VAKDFSEDTMVLYDFDK--VPALVALQPSYNEHNIFYGPFDEEFLEEFIKQNFLPLSVPINQDTLNLLKDDKRKI-VLAI 153 (323)
Q Consensus 77 ~~~~~~~~~~~~~~~~~--~p~ivv~k~~~~~~~~y~g~~~~~~L~~fI~~~~~Plv~~~t~~~~~~~~~~~~~~-v~~f 153 (323)
++ .+.+++.++++.. .+.++++++.++....|+|+++.+.|.+||+.+++|+|+++|.++...++.+..+. +++|
T Consensus 185 ~t--s~~~~~~~~~~~~~~~~~i~l~kk~d~~~~~~~~~~~~~~l~~Fi~~~~~plv~~ft~~~~~~~~~~~~~~~~~~~ 262 (493)
T KOG0190|consen 185 HT--SDSDVAKKLELNTEGTFPIVLFKKFDELLVKYDGSFTPELLKKFIQENSLPLVTEFTVANNAKIYSSFVKLGLDFF 262 (493)
T ss_pred cc--CcHhHHhhccCCCCCcceEEeccccccchhhcccccCHHHHHHHHHHhcccccceecccccceeeccccccceeEE
Confidence 87 5678888777632 34588888865556667899999999999999999999999999998888765444 3445
Q ss_pred EeCCChhHHHHHHHHHHHHHHhCCC-eEEEEEcCcchhhHhhhcCCcCCCCCC-eEEEEeCC-cceeeccCCCCCCCCCC
Q 020623 154 VEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLP-KMVVWDGN-ENYLTVIGSESIDEEDQ 230 (323)
Q Consensus 154 ~~~~~~e~~~~~~~~l~~~A~~~~~-l~F~~vd~~~~~~~~~~~gl~~~~~~P-~ivI~~~~-~kY~~~~~~~~~~~~~t 230 (323)
++. .....+.+++.++++|++||+ ++|+++|...+++.++.||+ .....| .+++.+.+ +||.+. .++++
T Consensus 263 ~~~-~~~~~e~~~~~~~~vAk~f~~~l~Fi~~d~e~~~~~~~~~Gl-~~~~~~~~~v~~~~~~~Ky~~~------~e~~~ 334 (493)
T KOG0190|consen 263 VFF-KCNRFEELRKKFEEVAKKFKGKLRFILIDPESFARVLEFFGL-EEEQLPIRAVILNEDGSKYPLE------EEELD 334 (493)
T ss_pred ecc-ccccHHHHHHHHHHHHHhcccceEEEEEChHHhhHHHHhcCc-ccccCCeeEEeeccccccccCc------ccccc
Confidence 543 223568899999999999998 99999999999999999999 667777 44445544 577653 34578
Q ss_pred HHHHHHHHHHHHcCcccccccCC--CCCC--CCeeEEeccCcceehHHH--HHHHHHHHHhcCCC
Q 020623 231 GSQISRFLEGYREGRTEQKKVAG--PSIF--GFVNSLIGIRSVYIIVFM--VAMLMLLRTLGKDD 289 (323)
Q Consensus 231 ~~~I~~Fi~~~~~Gkl~~~~kSe--P~~~--g~v~~vVg~~~~~iv~~~--~~~~~~~~~~~~~~ 289 (323)
.++|.+|+.+|++|+++|++||+ |+.| ++||+|||+||+.||+-- ..++.+...|||||
T Consensus 335 ~~~ie~f~~~~l~Gk~~p~~kSqpiPe~~~~~pVkvvVgknfd~iv~de~KdVLvEfyAPWCgHC 399 (493)
T KOG0190|consen 335 QENIESFVKDFLDGKVKPHLKSQPIPEDNDRSPVKVVVGKNFDDIVLDEGKDVLVEFYAPWCGHC 399 (493)
T ss_pred HHHHHHHHHHHhcCccccccccCCCCcccccCCeEEEeecCHHHHhhccccceEEEEcCcccchh
Confidence 88999999999999999999999 7777 799999999999999964 88999999999999
|
|
| >TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.7e-28 Score=238.42 Aligned_cols=275 Identities=21% Similarity=0.300 Sum_probs=219.9
Q ss_pred CCcc--cccCCCCChHHHHHHHHHhcCCCceecCChHHHHHHHHhcCCcccEEEEecCC-----hhHHHHHHHhhcCcee
Q 020623 2 HGIP--TEYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFGLD-----ESVMSNLALKYKKKAW 74 (323)
Q Consensus 2 ~G~~--~eY~G~R~a~~Iv~~l~k~~~p~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~-----~~~f~~~A~~~~~~~~ 74 (323)
+|.. ..|.|.|+++.|++|+.++++|++..+++.++++.++..++ +.+|+|+.+ ...|.++|..+++.+.
T Consensus 84 ~g~~~~~~~~g~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~~~~~---~~vi~~~~~~~~~~~~~~~~~a~~~~~~~~ 160 (462)
T TIGR01130 84 NGEDSVSDYNGPRDADGIVKYMKKQSGPAVKEIETVADLEAFLADDD---VVVIGFFKDLDSELNDTFLSVAEKLRDVYF 160 (462)
T ss_pred CCccceeEecCCCCHHHHHHHHHHhcCCCceeecCHHHHHHHHhcCC---cEEEEEECCCCcHHHHHHHHHHHHhhhccc
Confidence 4554 78999999999999999999999999999999999999876 468887653 2478899999887765
Q ss_pred -EEeecccchhhHhhcCCCCCCeEEEecCCCCCC--ccccCCC--CHHHHHHHHHhhcCCCeeecChhhHHHhhcCCCcE
Q 020623 75 -FAVAKDFSEDTMVLYDFDKVPALVALQPSYNEH--NIFYGPF--DEEFLEEFIKQNFLPLSVPINQDTLNLLKDDKRKI 149 (323)
Q Consensus 75 -F~~~~~~~~~~~~~~~~~~~p~ivv~k~~~~~~--~~y~g~~--~~~~L~~fI~~~~~Plv~~~t~~~~~~~~~~~~~~ 149 (323)
|+.. .+..+...++. ..+.+++|++..+.. ..|.|+. +.++|.+||..+++|++.++|.+++..++..+ |+
T Consensus 161 ~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~fi~~~~~p~v~~~~~~~~~~~~~~~-~~ 236 (462)
T TIGR01130 161 FFAHS--SDVAAFAKLGA-FPDSVVLFKPKDEDEKFSKVDGEMDTDVSDLEKFIRAESLPLVGEFTQETAAKYFESG-PL 236 (462)
T ss_pred eEEec--CCHHHHhhcCC-CCCcEEEecccccccccccccCcccCCHHHHHHHHHHcCCCceEeeCCcchhhHhCCC-Cc
Confidence 4443 34455566665 357788887643333 3567764 56899999999999999999999999998776 77
Q ss_pred EEEEEeCC-ChhHHHHHHHHHHHHHHhCCC--eEEEEEcCcchhhHhhhcCCcCCCCCCeEEEEeCC--cceeeccCCCC
Q 020623 150 VLAIVEDE-TEEKSQKLVTTLKAAASANRE--LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGN--ENYLTVIGSES 224 (323)
Q Consensus 150 v~~f~~~~-~~e~~~~~~~~l~~~A~~~~~--l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI~~~~--~kY~~~~~~~~ 224 (323)
+++|+..+ +....+++.+.++++|+++++ +.|+++|+.++.+++..||+ ....+|+++|++.+ .+|.+.
T Consensus 237 ~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~f~~~d~~~~~~~~~~~~~-~~~~~P~~vi~~~~~~~~y~~~----- 310 (462)
T TIGR01130 237 VVLYYNVDESLDPFEELRNRFLEAAKKFRGKFVNFAVADEEDFGRELEYFGL-KAEKFPAVAIQDLEGNKKYPMD----- 310 (462)
T ss_pred eeEEEEecCCchHHHHHHHHHHHHHHHCCCCeEEEEEecHHHhHHHHHHcCC-CccCCceEEEEeCCcccccCCC-----
Confidence 77666532 222247888999999999994 99999999999999999999 66789999999986 456653
Q ss_pred CCCCCCHHHHHHHHHHHHcCcccccccCC--CCCC-CCeeEEeccCcceehHH--HHHHHHHHHHhcCCCC
Q 020623 225 IDEEDQGSQISRFLEGYREGRTEQKKVAG--PSIF-GFVNSLIGIRSVYIIVF--MVAMLMLLRTLGKDDE 290 (323)
Q Consensus 225 ~~~~~t~~~I~~Fi~~~~~Gkl~~~~kSe--P~~~-g~v~~vVg~~~~~iv~~--~~~~~~~~~~~~~~~~ 290 (323)
++.++.++|.+|++++++|+++|+++|+ |+.+ +.|++++|.||..++.- -..++.+...||+.|.
T Consensus 311 -~~~~~~~~i~~fi~~~~~g~~~~~~~se~~p~~~~~~v~~l~~~~f~~~v~~~~~~vlv~f~a~wC~~C~ 380 (462)
T TIGR01130 311 -QEEFSSENLEAFVKDFLDGKLKPYLKSEPIPEDDEGPVKVLVGKNFDEIVLDETKDVLVEFYAPWCGHCK 380 (462)
T ss_pred -cCCCCHHHHHHHHHHHhcCCCCeeeccCCCCccCCCccEEeeCcCHHHHhccCCCeEEEEEECCCCHhHH
Confidence 2268999999999999999999999999 5543 89999999999877653 2456667788999884
|
Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs). |
| >PTZ00102 disulphide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-28 Score=240.68 Aligned_cols=265 Identities=21% Similarity=0.274 Sum_probs=211.4
Q ss_pred CCcccccCCCCChHHHHHHHHHhcCCCceecCChHHHHHHHHhcCCcccEEEEecCC--h---hHHHHHHHhhcCceeEE
Q 020623 2 HGIPTEYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFGLD--E---SVMSNLALKYKKKAWFA 76 (323)
Q Consensus 2 ~G~~~eY~G~R~a~~Iv~~l~k~~~p~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--~---~~f~~~A~~~~~~~~F~ 76 (323)
+|....|.|+|++++|++|+.+.++|++..|++..+++.+..... ++++|++.+ + +.|.++|..+++.+.|.
T Consensus 115 ~g~~~~y~g~~~~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~f~~~a~~~~~~~~F~ 191 (477)
T PTZ00102 115 KGNPVNYSGGRTADGIVSWIKKLTGPAVTEVESASEIKLIAKKIF---VAFYGEYTSKDSELYKKFEEVADKHREHAKFF 191 (477)
T ss_pred CCceEEecCCCCHHHHHHHHHHhhCCCceeecCHHHHHHhhccCc---EEEEEEeccCCcHHHHHHHHHHHhccccceEE
Confidence 455568999999999999999999999999999888877655444 467776542 2 36788899998888776
Q ss_pred eecccchhhHhhcCCCCCCeEEEecCCCCCCccccCCCCHHHHHHHHHhhcCCCeeecChhhHHHhhcCCCcEEEEEEeC
Q 020623 77 VAKDFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQNFLPLSVPINQDTLNLLKDDKRKIVLAIVED 156 (323)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~p~ivv~k~~~~~~~~y~g~~~~~~L~~fI~~~~~Plv~~~t~~~~~~~~~~~~~~v~~f~~~ 156 (323)
.... .+.+.+.+|++ .+....+.+..+.++|.+||+.+++|++.++|.+++..++..++++++++ .
T Consensus 192 ~~~~-----------~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~fI~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~-~- 257 (477)
T PTZ00102 192 VKKH-----------EGKNKIYVLHK-DEEGVELFMGKTKEELEEFVSTESFPLFAEINAENYRRYISSGKDLVWFC-G- 257 (477)
T ss_pred EEcC-----------CCCCcEEEEec-CCCCcccCCCCCHHHHHHHHHHcCCCceeecCccchHHHhcCCccEEEEe-c-
Confidence 6521 13467888886 35555555556889999999999999999999999999998877665433 2
Q ss_pred CChhHHHHHHHHHHHHHHhCCC-eEEEEEcCcchhh-HhhhcCCcCCCCCCeEEEEeCCcceeeccCCCCCCCCCCHHHH
Q 020623 157 ETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFAD-FADTFEANKKSKLPKMVVWDGNENYLTVIGSESIDEEDQGSQI 234 (323)
Q Consensus 157 ~~~e~~~~~~~~l~~~A~~~~~-l~F~~vd~~~~~~-~~~~~gl~~~~~~P~ivI~~~~~kY~~~~~~~~~~~~~t~~~I 234 (323)
..++.+++.+.++++|+++++ ++|+|+|+++++. +++.||+ . .+|+++|.+..++|.++.+. ..-.+.++|
T Consensus 258 -~~~~~~~~~~~~~~~A~~~~~~~~f~~vd~~~~~~~~~~~~gi-~--~~P~~~i~~~~~~y~~~~~~---~~~~~~~~l 330 (477)
T PTZ00102 258 -TTEDYDKYKSVVRKVARKLREKYAFVWLDTEQFGSHAKEHLLI-E--EFPGLAYQSPAGRYLLPPAK---ESFDSVEAL 330 (477)
T ss_pred -CHHHHHHHHHHHHHHHHhccCceEEEEEechhcchhHHHhcCc-c--cCceEEEEcCCcccCCCccc---cccCCHHHH
Confidence 234567788999999999999 9999999999875 7889999 3 58999998877788764211 123689999
Q ss_pred HHHHHHHHcCcccccccCC--CCCC-CCeeEEeccCcceehHHH--HHHHHHHHHhcCCCC
Q 020623 235 SRFLEGYREGRTEQKKVAG--PSIF-GFVNSLIGIRSVYIIVFM--VAMLMLLRTLGKDDE 290 (323)
Q Consensus 235 ~~Fi~~~~~Gkl~~~~kSe--P~~~-g~v~~vVg~~~~~iv~~~--~~~~~~~~~~~~~~~ 290 (323)
.+|++++.+|+++++++|+ |+.+ ++|++++|.+|..+|+-- ..++.+...||++|-
T Consensus 331 ~~Fv~~~~~gk~~~~~~se~~p~~~~~~v~~l~~~~f~~~v~~~~k~vlv~f~a~wC~~C~ 391 (477)
T PTZ00102 331 IEFFKDVEAGKVEKSIKSEPIPEEQDGPVKVVVGNTFEEIVFKSDKDVLLEIYAPWCGHCK 391 (477)
T ss_pred HHHHHHHhCCCCCcccccCCCCCCCCCCeEEecccchHHHHhcCCCCEEEEEECCCCHHHH
Confidence 9999999999999999999 5544 899999999998877643 567777789999993
|
|
| >PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle [] | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.3e-24 Score=192.09 Aligned_cols=236 Identities=20% Similarity=0.325 Sum_probs=169.5
Q ss_pred CCcccccCCCCChHHHHHHHHHhcCCCceecCChHHHHHHHHhcCCcccEEEEecCC--hh---HHHHHHHhhcCceeEE
Q 020623 2 HGIPTEYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFGLD--ES---VMSNLALKYKKKAWFA 76 (323)
Q Consensus 2 ~G~~~eY~G~R~a~~Iv~~l~k~~~p~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--~~---~f~~~A~~~~~~~~F~ 76 (323)
+|..++|.|.|+|+.+|+|+......||..|+++.+++.|-.-++. +.+||||++ ++ .|.++|..++.-+.|.
T Consensus 121 d~~~IEydG~~saDtLVeFl~dl~edPVeiIn~~~e~~~Fe~ied~--~klIGyFk~~~s~~yk~FeeAAe~F~p~IkFf 198 (383)
T PF01216_consen 121 DGEVIEYDGERSADTLVEFLLDLLEDPVEIINNKHELKAFERIEDD--IKLIGYFKSEDSEHYKEFEEAAEHFQPYIKFF 198 (383)
T ss_dssp TTEEEEE-S--SHHHHHHHHHHHHSSSEEEE-SHHHHHHHHH--SS---EEEEE-SSTTSHHHHHHHHHHHHCTTTSEEE
T ss_pred CCcEEEecCccCHHHHHHHHHHhcccchhhhcChhhhhhhhhcccc--eeEEEEeCCCCcHHHHHHHHHHHhhcCceeEE
Confidence 5788999999999999999999999999999999999999886543 689999875 32 6778899988777665
Q ss_pred eecccchhhHhhcCCCCCCeEEEecCCCCCCccccC-CCCHHHHHHHHHhhcCCCeeecChhhHHHhhcCC--CcEEEEE
Q 020623 77 VAKDFSEDTMVLYDFDKVPALVALQPSYNEHNIFYG-PFDEEFLEEFIKQNFLPLSVPINQDTLNLLKDDK--RKIVLAI 153 (323)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~p~ivv~k~~~~~~~~y~g-~~~~~~L~~fI~~~~~Plv~~~t~~~~~~~~~~~--~~~v~~f 153 (323)
.+ +++.++++.++ +.+.|-+|+++.+++.+..| +.+.++|.+||+.|..|.+..++++++.....+. .-++++|
T Consensus 199 At--fd~~vAk~L~l-K~nev~fyepF~~~pi~ip~~p~~e~e~~~fi~~h~rptlrkl~~~~m~e~Wedd~~g~hIvaF 275 (383)
T PF01216_consen 199 AT--FDKKVAKKLGL-KLNEVDFYEPFMDEPITIPGKPYTEEELVEFIEEHKRPTLRKLRPEDMFETWEDDIDGIHIVAF 275 (383)
T ss_dssp EE---SHHHHHHHT--STT-EEEE-TTSSSEEEESSSS--HHHHHHHHHHT-S-SEEE--GGGHHHHHHSSSSSEEEEEE
T ss_pred EE--ecchhhhhcCc-cccceeeeccccCCCccCCCCCCCHHHHHHHHHHhchhHhhhCChhhhhhhhcccCCCceEEEE
Confidence 55 68899999998 58899999998778777664 6789999999999999999999999988766543 4566778
Q ss_pred EeCCChhHHHHHHHHHHHHHHhCCC---eEEEEEcCcchhh----HhhhcCCcCCCCCCeEEEEeCC---cceeeccCCC
Q 020623 154 VEDETEEKSQKLVTTLKAAASANRE---LVFCYVGIKQFAD----FADTFEANKKSKLPKMVVWDGN---ENYLTVIGSE 223 (323)
Q Consensus 154 ~~~~~~e~~~~~~~~l~~~A~~~~~---l~F~~vd~~~~~~----~~~~~gl~~~~~~P~ivI~~~~---~kY~~~~~~~ 223 (323)
...+ ..++-++.+.|+++|+.+.+ +.++|+|.+.|+- |-..|||+ -.-|+|.++|.. +.|.-+++.
T Consensus 276 aee~-dpdG~efleilk~va~~nt~np~LsivwIDPD~fPllv~yWE~tF~Id--l~~PqIGvVnvtdadsvW~dm~d~- 351 (383)
T PF01216_consen 276 AEEE-DPDGFEFLEILKQVARDNTDNPDLSIVWIDPDDFPLLVPYWEKTFGID--LSRPQIGVVNVTDADSVWMDMDDD- 351 (383)
T ss_dssp --TT-SHHHHHHHHHHHHHHHHCTT-TT--EEEE-GGG-HHHHHHHHHHHTT---TTS-EEEEEETTTSEEEEC-STTT-
T ss_pred ecCC-CCchHHHHHHHHHHHHhcCcCCceeEEEECCCCCchhHHHHHhhcCcc--ccCCceeEEeccccccchhccCCc-
Confidence 7753 44577899999999999764 9999999999975 44689994 446999999973 467666543
Q ss_pred CCCCCCCHHHHHHHHHHHHcCcccc
Q 020623 224 SIDEEDQGSQISRFLEGYREGRTEQ 248 (323)
Q Consensus 224 ~~~~~~t~~~I~~Fi~~~~~Gkl~~ 248 (323)
++..|.+.++.||+++++|++.+
T Consensus 352 --~d~pt~~~LedWieDVlsg~i~~ 374 (383)
T PF01216_consen 352 --DDLPTAEELEDWIEDVLSGKINT 374 (383)
T ss_dssp --SS---HHHHHHHHHHHHCTCCTB
T ss_pred --ccCCcHHHHHHHHHHHhcCCCCC
Confidence 23468999999999999999875
|
It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A. |
| >PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A | Back alignment and domain information |
|---|
Probab=99.93 E-value=3e-24 Score=184.56 Aligned_cols=172 Identities=24% Similarity=0.427 Sum_probs=145.0
Q ss_pred hHHHHHHHhhcCceeEEeecccchhhHhhcCCCCCCeEEEecCCCCCCccccCC-CCHHHHHHHHHhhcCCCeeecChhh
Q 020623 60 SVMSNLALKYKKKAWFAVAKDFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGP-FDEEFLEEFIKQNFLPLSVPINQDT 138 (323)
Q Consensus 60 ~~f~~~A~~~~~~~~F~~~~~~~~~~~~~~~~~~~p~ivv~k~~~~~~~~y~g~-~~~~~L~~fI~~~~~Plv~~~t~~~ 138 (323)
+.|.++|..+++++.|+++ .+++++..++++ .|+|++||+..++...|.|+ ++.++|.+||+.+++|+|.++|.+|
T Consensus 10 ~~f~~~A~~~~~~~~F~~~--~~~~~~~~~~~~-~p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~~~P~v~~~t~~n 86 (184)
T PF13848_consen 10 EIFEEAAEKLKGDYQFGVT--FNEELAKKYGIK-EPTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKNSFPLVPELTPEN 86 (184)
T ss_dssp HHHHHHHHHHTTTSEEEEE--E-HHHHHHCTCS-SSEEEEEECTTTSEEEESSSTTSHHHHHHHHHHHSSTSCEEESTTH
T ss_pred HHHHHHHHhCcCCcEEEEE--cHHHHHHHhCCC-CCcEEEeccCCCCceecccccCCHHHHHHHHHHhccccccccchhh
Confidence 4788999999988999988 477888899986 49999999855566789997 8999999999999999999999999
Q ss_pred HHHhhcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC-eEEEEEcCcchhhHhhhcCCcCCCCCCeEEEEeCC-cce
Q 020623 139 LNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGN-ENY 216 (323)
Q Consensus 139 ~~~~~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~-l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI~~~~-~kY 216 (323)
+..++..++|++++++...+.+..+.+.+.|+++|+++++ +.|+|+|++.++++++.||+ ++.++|+++|++.. ++|
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~~~~~~~~~~i-~~~~~P~~vi~~~~~~~~ 165 (184)
T PF13848_consen 87 FEKLFSSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADDFPRLLKYFGI-DEDDLPALVIFDSNKGKY 165 (184)
T ss_dssp HHHHHSTSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTTTHHHHHHTTT-TTSSSSEEEEEETTTSEE
T ss_pred HHHHhcCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHHhHHHHHHcCC-CCccCCEEEEEECCCCcE
Confidence 9999998887444444333456678899999999999999 99999999989999999999 78899999999963 455
Q ss_pred eeccCCCCCCCCCCHHHHHHHHHH
Q 020623 217 LTVIGSESIDEEDQGSQISRFLEG 240 (323)
Q Consensus 217 ~~~~~~~~~~~~~t~~~I~~Fi~~ 240 (323)
+++. +++++.++|.+|+++
T Consensus 166 ~~~~-----~~~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 166 YYLP-----EGEITPESIEKFLND 184 (184)
T ss_dssp EE-------SSCGCHHHHHHHHHH
T ss_pred EcCC-----CCCCCHHHHHHHhcC
Confidence 4432 347999999999986
|
... |
| >KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.6e-23 Score=185.02 Aligned_cols=241 Identities=16% Similarity=0.268 Sum_probs=185.6
Q ss_pred CCcc--cccCCCCChHHHHHHHHHhcCCCceecCChHHHHHHHHhcCCcccEEEEecCC--h---hHHHHHHHhhcCcee
Q 020623 2 HGIP--TEYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFGLD--E---SVMSNLALKYKKKAW 74 (323)
Q Consensus 2 ~G~~--~eY~G~R~a~~Iv~~l~k~~~p~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--~---~~f~~~A~~~~~~~~ 74 (323)
||.. .||+|.|+.+++.+|++++...++.++.|.++++....... -.+||||.+ + +.|.++|.-+++++.
T Consensus 81 nG~~~~rEYRg~RsVeaL~efi~kq~s~~i~Ef~sl~~l~n~~~p~K---~~vIgyF~~kdspey~~~~kva~~lr~dc~ 157 (375)
T KOG0912|consen 81 NGEMMKREYRGQRSVEALIEFIEKQLSDPINEFESLDQLQNLDIPSK---RTVIGYFPSKDSPEYDNLRKVASLLRDDCV 157 (375)
T ss_pred ccchhhhhhccchhHHHHHHHHHHHhccHHHHHHhHHHHHhhhcccc---ceEEEEeccCCCchHHHHHHHHHHHhhccE
Confidence 5653 59999999999999999999999999999999988776343 268998863 3 367789999999999
Q ss_pred EEeecccchhhHhhcCCCCCCeEEEecCCCCC-CccccCCCC-HHHHHHHHHhhcCCCeeecChhhHHHhhcCCCcEEEE
Q 020623 75 FAVAKDFSEDTMVLYDFDKVPALVALQPSYNE-HNIFYGPFD-EEFLEEFIKQNFLPLSVPINQDTLNLLKDDKRKIVLA 152 (323)
Q Consensus 75 F~~~~~~~~~~~~~~~~~~~p~ivv~k~~~~~-~~~y~g~~~-~~~L~~fI~~~~~Plv~~~t~~~~~~~~~~~~~~v~~ 152 (323)
|-+. +. ++.....-++. .+.++++.... ...|.|+++ .+.|+.||.+.+.|+|.++|-+|...+...|.|++++
T Consensus 158 f~V~--~g-D~~~~~~~~~~-~~~~f~pd~~~~~~~f~G~~~nf~el~~Wi~dKcvpLVREiTFeN~EELtEEGlPflIL 233 (375)
T KOG0912|consen 158 FLVG--FG-DLLKPHEPPGK-NILVFDPDHSEPNHEFLGSMTNFDELKQWIQDKCVPLVREITFENAEELTEEGLPFLIL 233 (375)
T ss_pred EEee--cc-ccccCCCCCCC-ceEEeCCCcCCcCcccccccccHHHHHHHHHhcchhhhhhhhhccHHHHhhcCCceEEE
Confidence 9776 32 22221111112 26777763222 236899875 6999999999999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHH-HHHHhCCCeEEEEEcCcchhhHhhhcCCcCCCCCCeEEEEeCCcceeeccCCCCCCCCCCH
Q 020623 153 IVEDETEEKSQKLVTTLK-AAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYLTVIGSESIDEEDQG 231 (323)
Q Consensus 153 f~~~~~~e~~~~~~~~l~-~~A~~~~~l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI~~~~~kY~~~~~~~~~~~~~t~ 231 (323)
|...++.+..+.+..+++ ++-.+-+-++|+.+|+..|.+.+..||- .+.++|.|+|-+....|.++. . .+-..+
T Consensus 234 f~~kdD~~s~k~F~~aI~ReL~~e~~~in~l~ADG~~f~hpL~HlgK-s~~DLPviaIDsF~Hmylfp~-f---~di~~p 308 (375)
T KOG0912|consen 234 FRKKDDKESEKIFKNAIARELDDETLAINFLTADGKVFKHPLRHLGK-SPDDLPVIAIDSFRHMYLFPD-F---NDINIP 308 (375)
T ss_pred EecCCcccHHHHHHHHHHHHhhhhhhccceeecCcceecchHHHhCC-CcccCcEEEeeccceeeecCc-h---hhhcCc
Confidence 988755544444443332 2222222299999999999999999998 789999999998888898863 2 233677
Q ss_pred HHHHHHHHHHHcCcccccccCCC
Q 020623 232 SQISRFLEGYREGRTEQKKVAGP 254 (323)
Q Consensus 232 ~~I~~Fi~~~~~Gkl~~~~kSeP 254 (323)
.+|.+|+.|..+|++++.+.-+|
T Consensus 309 GkLkqFv~DL~sgklHrefH~~~ 331 (375)
T KOG0912|consen 309 GKLKQFVADLHSGKLHREFHEGP 331 (375)
T ss_pred cHHHHHHHHHhCchhhHHhhcCC
Confidence 89999999999999999876664
|
|
| >KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=7.4e-16 Score=137.51 Aligned_cols=231 Identities=17% Similarity=0.272 Sum_probs=154.0
Q ss_pred CcccccCCCCChHHHHHHHHHhcCCCceecCChHHHHHHHHhcCCcccEEEEecCC-h---hHHHHHHHhhcCceeEEee
Q 020623 3 GIPTEYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFGLD-E---SVMSNLALKYKKKAWFAVA 78 (323)
Q Consensus 3 G~~~eY~G~R~a~~Iv~~l~k~~~p~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~-~---~~f~~~A~~~~~~~~F~~~ 78 (323)
|...+|+|+|+.++|++|..|-+++-+..|++-.....-++.... |.+|.|+.. . +.|-++|....--..|..+
T Consensus 110 d~a~dYRG~R~Kd~iieFAhR~a~aiI~pi~enQ~~fehlq~Rhq--~ffVf~Gtge~PL~d~fidAASe~~~~a~FfSa 187 (468)
T KOG4277|consen 110 DHAIDYRGGREKDAIIEFAHRCAAAIIEPINENQIEFEHLQARHQ--PFFVFFGTGEGPLFDAFIDAASEKFSVARFFSA 187 (468)
T ss_pred CeeeecCCCccHHHHHHHHHhcccceeeecChhHHHHHHHhhccC--ceEEEEeCCCCcHHHHHHHHhhhheeeeeeecc
Confidence 467899999999999999999999998888653332334444443 456666543 2 4555566543212223222
Q ss_pred cccchhhHhhcC-CCCCCeEEEecCCCCCCccccCCCCHHHHHHHHHhhcCCCeeecChhhHHHhhcCCCcEEEEEEeCC
Q 020623 79 KDFSEDTMVLYD-FDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQNFLPLSVPINQDTLNLLKDDKRKIVLAIVEDE 157 (323)
Q Consensus 79 ~~~~~~~~~~~~-~~~~p~ivv~k~~~~~~~~y~g~~~~~~L~~fI~~~~~Plv~~~t~~~~~~~~~~~~~~v~~f~~~~ 157 (323)
+.+++..+. .+..|++.||+. +...+++ ..+.++|..||...++|-+...+..++..+-.+++-+++++++..
T Consensus 188 ---seeVaPe~~~~kempaV~VFKD--etf~i~d-e~dd~dLseWinRERf~~fLa~dgflL~EiG~sGKLVaLaVidEk 261 (468)
T KOG4277|consen 188 ---SEEVAPEENDAKEMPAVAVFKD--ETFEIED-EGDDEDLSEWINRERFPGFLAADGFLLAEIGASGKLVALAVIDEK 261 (468)
T ss_pred ---ccccCCcccchhhccceEEEcc--ceeEEEe-cCchhHHHHHHhHhhccchhhcccchHHHhCcCCceEEEEEeccc
Confidence 445554443 234799999984 4444443 225688999999999999999999999998888776666555421
Q ss_pred ----ChhHHHHHHHHHHHHHHhCC-------CeEEEEEcCcchhhHhhhcCCcCCCCCCeEEEEeC-CcceeeccCCCCC
Q 020623 158 ----TEEKSQKLVTTLKAAASANR-------ELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDG-NENYLTVIGSESI 225 (323)
Q Consensus 158 ----~~e~~~~~~~~l~~~A~~~~-------~l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI~~~-~~kY~~~~~~~~~ 225 (323)
+......+.+..+++|+.+| +++|+|+|+.++...+. + ..-..|.++|.|. +..|+..++.
T Consensus 262 hk~nns~eh~~~~ki~eEaakd~Rd~pdfh~dFQF~hlDGnD~~nqil---M-~als~P~l~i~NtsnqeYfLse~d--- 334 (468)
T KOG4277|consen 262 HKFNNSSEHREFHKIAEEAAKDLRDHPDFHNDFQFAHLDGNDLANQIL---M-AALSEPHLFIFNTSNQEYFLSEDD--- 334 (468)
T ss_pred cccCCcchhHHHHHHHHHHHHHHHhChhhhhhceeeccchhHHHHHHH---H-HhhcCCeEEEEecCchheeeccCC---
Confidence 11224567788888888765 39999999987754332 3 2345799999997 5578774321
Q ss_pred CCCCCHHHHHHHHHHHHcCcccc
Q 020623 226 DEEDQGSQISRFLEGYREGRTEQ 248 (323)
Q Consensus 226 ~~~~t~~~I~~Fi~~~~~Gkl~~ 248 (323)
....+.++|.+||++-..|-..-
T Consensus 335 ~qikniedilqFientsegI~d~ 357 (468)
T KOG4277|consen 335 PQIKNIEDILQFIENTSEGIDDE 357 (468)
T ss_pred hhhhhHHHHHHHHhccccccccc
Confidence 12357899999999955444433
|
|
| >cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.7e-15 Score=120.19 Aligned_cols=105 Identities=10% Similarity=0.157 Sum_probs=91.0
Q ss_pred eeecChhhHHHhhcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHh---CCC-eEEEEEcCcchhhHhhhcCCcCCCCCCe
Q 020623 131 SVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASA---NRE-LVFCYVGIKQFADFADTFEANKKSKLPK 206 (323)
Q Consensus 131 v~~~t~~~~~~~~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~---~~~-l~F~~vd~~~~~~~~~~~gl~~~~~~P~ 206 (323)
|.++|.+|+..|+.++.|+.++|.. .++.+.+.+.++++|++ +|+ ++|+++|.+.+.+.+++||+ ++.++|.
T Consensus 1 ~~e~t~e~~~~~~~~~~~~~~l~f~---~~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~~~~~~~fgl-~~~~~P~ 76 (111)
T cd03072 1 VREITFENAEELTEEGLPFLILFHD---KDDLESLKEFKQAVARQLISEKGAINFLTADGDKFRHPLLHLGK-TPADLPV 76 (111)
T ss_pred CcccccccHHHHhcCCCCeEEEEec---chHHHHHHHHHHHHHHHHHhcCceEEEEEEechHhhhHHHHcCC-CHhHCCE
Confidence 5789999999999999888866652 45568889999999999 999 99999999999889999999 7778999
Q ss_pred EEEEeCCc--ceeeccCCCCCCCCCCHHHHHHHHHHHHcCc
Q 020623 207 MVVWDGNE--NYLTVIGSESIDEEDQGSQISRFLEGYREGR 245 (323)
Q Consensus 207 ivI~~~~~--kY~~~~~~~~~~~~~t~~~I~~Fi~~~~~Gk 245 (323)
++|++..+ ||.+. +++++.++|.+|+++|++|+
T Consensus 77 i~i~~~~~~~Ky~~~------~~~~t~~~i~~Fv~~~~~Gk 111 (111)
T cd03072 77 IAIDSFRHMYLFPDF------EDVYVPGKLKQFVLDLHSGK 111 (111)
T ss_pred EEEEcchhcCcCCCC------ccccCHHHHHHHHHHHhcCC
Confidence 99999843 77643 34689999999999999996
|
It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site. |
| >cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain) | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.4e-13 Score=109.88 Aligned_cols=119 Identities=15% Similarity=0.252 Sum_probs=93.3
Q ss_pred CCeeecChhhH-HHhhcCCCcEEEE-EEeC---CChhHHHHHHHHHHHHHHhCCC--eEEEEEcCcchhhHhhhcCCcCC
Q 020623 129 PLSVPINQDTL-NLLKDDKRKIVLA-IVED---ETEEKSQKLVTTLKAAASANRE--LVFCYVGIKQFADFADTFEANKK 201 (323)
Q Consensus 129 Plv~~~t~~~~-~~~~~~~~~~v~~-f~~~---~~~e~~~~~~~~l~~~A~~~~~--l~F~~vd~~~~~~~~~~~gl~~~ 201 (323)
|-+.+++.++. ...+.. +.+|++ |++. .+.+..+++.+.|+++|++|++ +.|+|+|+.++..++++||+ ++
T Consensus 2 ~~~~~l~~~~~~~~~C~~-~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~~~~~fgl-~~ 79 (130)
T cd02983 2 PEIIELTSEDVFEETCEE-KQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQLDLEEALNI-GG 79 (130)
T ss_pred CceEEecCHHHHHhhccC-CCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccHHHHHHcCC-Cc
Confidence 56788887655 446644 568754 4431 2345567889999999999997 89999999998889999999 66
Q ss_pred CCCCeEEEEeCCc-ceeeccCCCCCCCCCCHHHHHHHHHHHHcCcccccccCC-CC
Q 020623 202 SKLPKMVVWDGNE-NYLTVIGSESIDEEDQGSQISRFLEGYREGRTEQKKVAG-PS 255 (323)
Q Consensus 202 ~~~P~ivI~~~~~-kY~~~~~~~~~~~~~t~~~I~~Fi~~~~~Gkl~~~~kSe-P~ 255 (323)
.++|++++++.++ ||.++ .+++|.++|.+|+++|++|++....-++ |.
T Consensus 80 ~~~P~v~i~~~~~~KY~~~------~~~~t~e~i~~Fv~~~l~Gkl~~~~~~~~p~ 129 (130)
T cd02983 80 FGYPAMVAINFRKMKFATL------KGSFSEDGINEFLRELSYGRGPTLPVNGLPK 129 (130)
T ss_pred cCCCEEEEEecccCccccc------cCccCHHHHHHHHHHHHcCCcccccCCCCCC
Confidence 7899999999864 88754 4569999999999999999997654444 54
|
Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI. |
| >cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.1e-13 Score=108.01 Aligned_cols=102 Identities=16% Similarity=0.211 Sum_probs=84.4
Q ss_pred eeecChhhHHHhhcCCCcEEEEEEeC---CChhHHHHHHHHHHHHHHhCC-C-eEEEEEcCcchhhHhhhcCCcCCCC--
Q 020623 131 SVPINQDTLNLLKDDKRKIVLAIVED---ETEEKSQKLVTTLKAAASANR-E-LVFCYVGIKQFADFADTFEANKKSK-- 203 (323)
Q Consensus 131 v~~~t~~~~~~~~~~~~~~v~~f~~~---~~~e~~~~~~~~l~~~A~~~~-~-l~F~~vd~~~~~~~~~~~gl~~~~~-- 203 (323)
|+++|.+|...++. +|+++++++. .+.+..+.+.+.++++|+++| + ++|+|+|.+++.+.+++||| +..+
T Consensus 1 v~~~~~en~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~gki~Fv~~D~~~~~~~l~~fgl-~~~~~~ 77 (111)
T cd03073 1 VGHRTKDNRAQFTK--KPLVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPDRKLNFAVADKEDFSHELEEFGL-DFSGGE 77 (111)
T ss_pred CCeeccchHHHhcc--CCeEEEEEeccccCChhHHHHHHHHHHHHHHHCcCCeEEEEEEcHHHHHHHHHHcCC-CcccCC
Confidence 57899999999975 6777777653 134566788999999999999 7 99999999999889999999 6656
Q ss_pred CCeEEEEeCC-cceeeccCCCCCCCCC-CHHHHHHHHHHHH
Q 020623 204 LPKMVVWDGN-ENYLTVIGSESIDEED-QGSQISRFLEGYR 242 (323)
Q Consensus 204 ~P~ivI~~~~-~kY~~~~~~~~~~~~~-t~~~I~~Fi~~~~ 242 (323)
.|+++|++.+ .||.. ++++ |.++|.+|+++|+
T Consensus 78 ~P~~~i~~~~~~KY~~-------~~~~~t~e~i~~F~~~f~ 111 (111)
T cd03073 78 KPVVAIRTAKGKKYVM-------EEEFSDVDALEEFLEDFF 111 (111)
T ss_pred CCEEEEEeCCCCccCC-------CcccCCHHHHHHHHHHhC
Confidence 9999999864 58874 3357 9999999999984
|
They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei |
| >cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants | Back alignment and domain information |
|---|
Probab=99.23 E-value=8.4e-11 Score=91.29 Aligned_cols=99 Identities=19% Similarity=0.377 Sum_probs=79.2
Q ss_pred hhhHHHhhcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC-eEEEEEcCcchhhHhhhcCCcCCCCCCeEEEEeC--
Q 020623 136 QDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDG-- 212 (323)
Q Consensus 136 ~~~~~~~~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~-l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI~~~-- 212 (323)
.+++..+...++|++++|... +.+..+.+...++++|+++++ +.|+|+|+++++++++.||+ +....|++++++.
T Consensus 2 ~~~~~~~~~~~~~~~~~f~~~-~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~~~~~~~i-~~~~~P~~~~~~~~~ 79 (103)
T cd02982 2 AETFFNYEESGKPLLVLFYNK-DDSESEELRERFKEVAKKFKGKLLFVVVDADDFGRHLEYFGL-KEEDLPVIAIINLSD 79 (103)
T ss_pred HhHHhhhhhcCCCEEEEEEcC-ChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHHHHHHcCC-ChhhCCEEEEEeccc
Confidence 455666655578898888764 333567888999999999998 99999999998899999999 6568999999998
Q ss_pred CcceeeccCCCCCCCCCCHHHHHHHHHHHH
Q 020623 213 NENYLTVIGSESIDEEDQGSQISRFLEGYR 242 (323)
Q Consensus 213 ~~kY~~~~~~~~~~~~~t~~~I~~Fi~~~~ 242 (323)
.++|.+. .+.++.++|.+|+++++
T Consensus 80 ~~k~~~~------~~~~~~~~l~~fi~~~~ 103 (103)
T cd02982 80 GKKYLMP------EEELTAESLEEFVEDFL 103 (103)
T ss_pred ccccCCC------ccccCHHHHHHHHHhhC
Confidence 4577653 23368999999999874
|
Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w |
| >cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.2e-10 Score=90.82 Aligned_cols=94 Identities=20% Similarity=0.304 Sum_probs=77.4
Q ss_pred CceecCChHHHHHHHH-hcCCcccEEEEecCC--h---hHHHHHHHhhcCceeEEeecccchhhHhhcCCCCCCeEEEec
Q 020623 28 DVSILNSDAEVSDFVE-NAGTFFPLFIGFGLD--E---SVMSNLALKYKKKAWFAVAKDFSEDTMVLYDFDKVPALVALQ 101 (323)
Q Consensus 28 ~v~~i~s~~~l~~fl~-~~~~~~~~vVgf~~~--~---~~f~~~A~~~~~~~~F~~~~~~~~~~~~~~~~~~~p~ivv~k 101 (323)
+|+.|+|.+++++|++ +++ +++|||+.+ + ..|.++|..+|+++.|+++ .++++...+++ ..|.|++++
T Consensus 1 ~v~~i~~~~~~e~~~~~~~~---~~Vvg~f~~~~~~~~~~F~~vA~~~R~d~~F~~~--~~~~~~~~~~~-~~~~i~l~~ 74 (102)
T cd03066 1 PVEIINSERELQAFENIEDD---IKLIGYFKSEDSEHYKAFEEAAEEFHPYIKFFAT--FDSKVAKKLGL-KMNEVDFYE 74 (102)
T ss_pred CceEcCCHHHHHHHhcccCC---eEEEEEECCCCCHHHHHHHHHHHhhhcCCEEEEE--CcHHHHHHcCC-CCCcEEEeC
Confidence 4688999999999998 777 479999864 2 4788999999999999998 56677777776 478999998
Q ss_pred CCCCCCccc-cCCCCHHHHHHHHHhhc
Q 020623 102 PSYNEHNIF-YGPFDEEFLEEFIKQNF 127 (323)
Q Consensus 102 ~~~~~~~~y-~g~~~~~~L~~fI~~~~ 127 (323)
+..++...| .|+++.+.|.+||+.+.
T Consensus 75 ~~~e~~~~y~~g~~~~~~l~~fi~~~~ 101 (102)
T cd03066 75 PFMEEPVTIPDKPYSEEELVDFVEEHK 101 (102)
T ss_pred CCCCCCcccCCCCCCHHHHHHHHHHhc
Confidence 755556679 78889999999999874
|
It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca |
| >cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.3e-10 Score=91.12 Aligned_cols=93 Identities=22% Similarity=0.335 Sum_probs=75.2
Q ss_pred CceecCChHHHHHHHHhcCCcccEEEEecCC--h---hHHHHHHHhhcCceeEEeecccchhhHhhcCCCCCCeEEEecC
Q 020623 28 DVSILNSDAEVSDFVENAGTFFPLFIGFGLD--E---SVMSNLALKYKKKAWFAVAKDFSEDTMVLYDFDKVPALVALQP 102 (323)
Q Consensus 28 ~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--~---~~f~~~A~~~~~~~~F~~~~~~~~~~~~~~~~~~~p~ivv~k~ 102 (323)
+++.|+|.+++++|+..++ +++|||+.+ + ..|.++|..+|+++.|+++ .++++...+++ .|.+++|++
T Consensus 1 ~~~~i~s~~~l~~f~~~~~---~~Vvg~f~~~~~~~~~~F~~vA~~~R~d~~F~~~--~~~~~~~~~~~--~~~ivl~~p 73 (104)
T cd03069 1 ASVELRTEAEFEKFLSDDD---ASVVGFFEDEDSKLLSEFLKAADTLRESFRFAHT--SDKQLLEKYGY--GEGVVLFRP 73 (104)
T ss_pred CccccCCHHHHHHHhccCC---cEEEEEEcCCCchHHHHHHHHHHhhhhcCEEEEE--ChHHHHHhcCC--CCceEEEec
Confidence 3678899999999998877 479999864 1 4788999999999999998 46677777876 588999954
Q ss_pred ------CCCCCccccCCCCHHHHHHHHHhhc
Q 020623 103 ------SYNEHNIFYGPFDEEFLEEFIKQNF 127 (323)
Q Consensus 103 ------~~~~~~~y~g~~~~~~L~~fI~~~~ 127 (323)
..++..+|.|+++.+.|.+||+.+.
T Consensus 74 ~~~~~k~de~~~~y~g~~~~~~l~~fi~~~~ 104 (104)
T cd03069 74 PRLSNKFEDSSVKFDGDLDSSKIKKFIRENI 104 (104)
T ss_pred hhhhcccCcccccccCcCCHHHHHHHHHhhC
Confidence 3344567999999999999998763
|
It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates. |
| >cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.1e-10 Score=86.56 Aligned_cols=92 Identities=26% Similarity=0.351 Sum_probs=75.8
Q ss_pred ceecCChHHHHHHHHhcCCcccEEEEecCC-----hhHHHHHHHhhcCceeEEeecccchhhHhhcCCCCCCeEEEecCC
Q 020623 29 VSILNSDAEVSDFVENAGTFFPLFIGFGLD-----ESVMSNLALKYKKKAWFAVAKDFSEDTMVLYDFDKVPALVALQPS 103 (323)
Q Consensus 29 v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~-----~~~f~~~A~~~~~~~~F~~~~~~~~~~~~~~~~~~~p~ivv~k~~ 103 (323)
+..|++.+++++++..++ +++|||+.+ ...|.++|..+++.+.|+++ .+.++..++++ +.|++++|++.
T Consensus 1 ~~~i~s~~~l~~~~~~~~---~~vvg~f~~~~~~~~~~f~~~A~~~r~~~~F~~~--~~~~~~~~~~~-~~~~i~l~~~~ 74 (97)
T cd02981 1 VKELTSKEELEKFLDKDD---VVVVGFFKDEESEEYKTFEKVAESLRDDYGFGHT--SDKEVAKKLKV-KPGSVVLFKPF 74 (97)
T ss_pred CeecCCHHHHHHHhccCC---eEEEEEECCCCcHHHHHHHHHHHhcccCCeEEEE--ChHHHHHHcCC-CCCceEEeCCc
Confidence 457889999999998887 589999864 14788999999989999998 45677777776 46899999986
Q ss_pred CCCCccccCCCCHHHHHHHHHhh
Q 020623 104 YNEHNIFYGPFDEEFLEEFIKQN 126 (323)
Q Consensus 104 ~~~~~~y~g~~~~~~L~~fI~~~ 126 (323)
.+.+..|+|+++.++|.+||..+
T Consensus 75 ~~~~~~y~g~~~~~~l~~fi~~~ 97 (97)
T cd02981 75 EEEPVEYDGEFTEESLVEFIKDN 97 (97)
T ss_pred ccCCccCCCCCCHHHHHHHHHhC
Confidence 66777899999999999999864
|
Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai |
| >PTZ00102 disulphide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.8e-08 Score=99.32 Aligned_cols=222 Identities=14% Similarity=0.159 Sum_probs=155.6
Q ss_pred ccCCCCChHHHHHHHHHhcCCCceecCChHHHHHHHHhcCCcccEEEEecCC------hhHHHHHHHhhcCceeEEeecc
Q 020623 7 EYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFGLD------ESVMSNLALKYKKKAWFAVAKD 80 (323)
Q Consensus 7 eY~G~R~a~~Iv~~l~k~~~p~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~------~~~f~~~A~~~~~~~~F~~~~~ 80 (323)
.|.++.+.+.|.+|+....-|.+..++. +.+..+...... +++.+... .+.|.++|+++++++.|+.++.
T Consensus 212 ~~~~~~~~~~l~~fI~~~~~P~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~f~~vd~ 287 (477)
T PTZ00102 212 ELFMGKTKEELEEFVSTESFPLFAEINA-ENYRRYISSGKD---LVWFCGTTEDYDKYKSVVRKVARKLREKYAFVWLDT 287 (477)
T ss_pred ccCCCCCHHHHHHHHHHcCCCceeecCc-cchHHHhcCCcc---EEEEecCHHHHHHHHHHHHHHHHhccCceEEEEEec
Confidence 3445569999999999999999999965 666666655542 22222221 1367899999999998887743
Q ss_pred cc-h-hhHhhcCCCCCCeEEEecCCCCCCccccCC----CCHHHHHHHHHhhcC------------C-----CeeecChh
Q 020623 81 FS-E-DTMVLYDFDKVPALVALQPSYNEHNIFYGP----FDEEFLEEFIKQNFL------------P-----LSVPINQD 137 (323)
Q Consensus 81 ~~-~-~~~~~~~~~~~p~ivv~k~~~~~~~~y~g~----~~~~~L~~fI~~~~~------------P-----lv~~~t~~ 137 (323)
.. . .+...+|+...|++++... +.+..+.+. .+.+.|.+|++...- | .+..++.+
T Consensus 288 ~~~~~~~~~~~gi~~~P~~~i~~~--~~~y~~~~~~~~~~~~~~l~~Fv~~~~~gk~~~~~~se~~p~~~~~~v~~l~~~ 365 (477)
T PTZ00102 288 EQFGSHAKEHLLIEEFPGLAYQSP--AGRYLLPPAKESFDSVEALIEFFKDVEAGKVEKSIKSEPIPEEQDGPVKVVVGN 365 (477)
T ss_pred hhcchhHHHhcCcccCceEEEEcC--CcccCCCccccccCCHHHHHHHHHHHhCCCCCcccccCCCCCCCCCCeEEeccc
Confidence 21 1 2556788888898877653 334445443 578999999995331 2 36678888
Q ss_pred hHHHh-hcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC---eEEEEEcCcchhhHhhhcCCcCCCCCCeEEEEeCC
Q 020623 138 TLNLL-KDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE---LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGN 213 (323)
Q Consensus 138 ~~~~~-~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~---l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI~~~~ 213 (323)
++... ...++++++.|... -=..-+.+...+.++|+.+++ +.|+++|++.....++.+++ ...|.+++++.+
T Consensus 366 ~f~~~v~~~~k~vlv~f~a~-wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~~~v---~~~Pt~~~~~~~ 441 (477)
T PTZ00102 366 TFEEIVFKSDKDVLLEIYAP-WCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPLEEFSW---SAFPTILFVKAG 441 (477)
T ss_pred chHHHHhcCCCCEEEEEECC-CCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccchhcCCC---cccCeEEEEECC
Confidence 99876 56678888777653 113346677788899988763 89999999876666778888 578999999876
Q ss_pred ccee-eccCCCCCCCCCCHHHHHHHHHHHHcC
Q 020623 214 ENYL-TVIGSESIDEEDQGSQISRFLEGYREG 244 (323)
Q Consensus 214 ~kY~-~~~~~~~~~~~~t~~~I~~Fi~~~~~G 244 (323)
++-. .. .+..+.++|.+||+.....
T Consensus 442 ~~~~~~~------~G~~~~~~l~~~i~~~~~~ 467 (477)
T PTZ00102 442 ERTPIPY------EGERTVEGFKEFVNKHATN 467 (477)
T ss_pred CcceeEe------cCcCCHHHHHHHHHHcCCC
Confidence 5321 11 3457899999999997654
|
|
| >cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.3e-09 Score=84.43 Aligned_cols=93 Identities=18% Similarity=0.319 Sum_probs=72.7
Q ss_pred CceecCChHHHHHHHHhc-CCcccEEEEecCC--h---hHHHHHHHhhcCceeEEeecccchhhHhhcCCCCCCeEEEec
Q 020623 28 DVSILNSDAEVSDFVENA-GTFFPLFIGFGLD--E---SVMSNLALKYKKKAWFAVAKDFSEDTMVLYDFDKVPALVALQ 101 (323)
Q Consensus 28 ~v~~i~s~~~l~~fl~~~-~~~~~~vVgf~~~--~---~~f~~~A~~~~~~~~F~~~~~~~~~~~~~~~~~~~p~ivv~k 101 (323)
|++.|+|.+++++|+..+ + +++|||+.+ + ..|.++|..+|+++.|+++ .++++..++++ ..|.+++|+
T Consensus 1 ~v~~i~s~~ele~f~~~~~~---~~VVG~F~~~~~~~~~~F~~vA~~~Rdd~~F~~t--~~~~~~~~~~~-~~~~vvl~r 74 (107)
T cd03068 1 PSKQLQTLKQVQEFLRDGDD---VIIIGVFSGEEDPAYQLYQDAANSLREDYKFHHT--FDSEIFKSLKV-SPGQLVVFQ 74 (107)
T ss_pred CceEcCCHHHHHHHHhcCCC---EEEEEEECCCCCHHHHHHHHHHHhcccCCEEEEE--ChHHHHHhcCC-CCCceEEEC
Confidence 578899999999999887 6 579999864 1 4788999999999999998 46677777777 468899984
Q ss_pred C-----CCC-CCccccCC-CCHHH-HHHHHHhh
Q 020623 102 P-----SYN-EHNIFYGP-FDEEF-LEEFIKQN 126 (323)
Q Consensus 102 ~-----~~~-~~~~y~g~-~~~~~-L~~fI~~~ 126 (323)
+ +++ ...+|.|. .+.++ |.+||+.|
T Consensus 75 p~~~~~k~e~~~~~~~~~~~~~~~~~~~f~~~~ 107 (107)
T cd03068 75 PEKFQSKYEPKSHVLNKKDSTSEDELKDFFKEH 107 (107)
T ss_pred cHHHhhhcCcceeeeeccccchHHHHHHHHhcC
Confidence 3 244 45578877 66655 99999875
|
It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates. |
| >TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic | Back alignment and domain information |
|---|
Probab=98.88 E-value=6.1e-07 Score=87.74 Aligned_cols=229 Identities=15% Similarity=0.166 Sum_probs=154.3
Q ss_pred ccCCCC--ChHHHHHHHHHhcCCCceecCChHHHHHHHHhcCCcccEEEEecC-Ch-------hHHHHHHHhhcC-ceeE
Q 020623 7 EYYGPR--KAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFGL-DE-------SVMSNLALKYKK-KAWF 75 (323)
Q Consensus 7 eY~G~R--~a~~Iv~~l~k~~~p~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~-~~-------~~f~~~A~~~~~-~~~F 75 (323)
.|.|.- +.+.|..|+....-|.+..++ ...+....+.... .+++.+.. +. +.+..+|.++++ .+.|
T Consensus 195 ~~~~~~~~~~~~l~~fi~~~~~p~v~~~~-~~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~f 271 (462)
T TIGR01130 195 KVDGEMDTDVSDLEKFIRAESLPLVGEFT-QETAAKYFESGPL--VVLYYNVDESLDPFEELRNRFLEAAKKFRGKFVNF 271 (462)
T ss_pred cccCcccCCHHHHHHHHHHcCCCceEeeC-CcchhhHhCCCCc--eeEEEEecCCchHHHHHHHHHHHHHHHCCCCeEEE
Confidence 466655 568999999999999999995 5666676665532 22333322 21 367889999986 7888
Q ss_pred Eeeccc-chhhHhhcCCC--CCCeEEEecCCCCCCccccC-CCCHHHHHHHHHhhcC-----------------CCeeec
Q 020623 76 AVAKDF-SEDTMVLYDFD--KVPALVALQPSYNEHNIFYG-PFDEEFLEEFIKQNFL-----------------PLSVPI 134 (323)
Q Consensus 76 ~~~~~~-~~~~~~~~~~~--~~p~ivv~k~~~~~~~~y~g-~~~~~~L~~fI~~~~~-----------------Plv~~~ 134 (323)
+..+.. -..++..+++. ..|.++++.........+.+ .++.+.|.+||.+..- ..+..+
T Consensus 272 ~~~d~~~~~~~~~~~~~~~~~~P~~vi~~~~~~~~y~~~~~~~~~~~i~~fi~~~~~g~~~~~~~se~~p~~~~~~v~~l 351 (462)
T TIGR01130 272 AVADEEDFGRELEYFGLKAEKFPAVAIQDLEGNKKYPMDQEEFSSENLEAFVKDFLDGKLKPYLKSEPIPEDDEGPVKVL 351 (462)
T ss_pred EEecHHHhHHHHHHcCCCccCCceEEEEeCCcccccCCCcCCCCHHHHHHHHHHHhcCCCCeeeccCCCCccCCCccEEe
Confidence 877431 23456667775 58999998753213445554 7889999999987531 246678
Q ss_pred ChhhHHHhh-cCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC----eEEEEEcCcchhhHhhhcCCcCCCCCCeEEE
Q 020623 135 NQDTLNLLK-DDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE----LVFCYVGIKQFADFADTFEANKKSKLPKMVV 209 (323)
Q Consensus 135 t~~~~~~~~-~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~----l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI 209 (323)
+..++..+. ..++++++.|... --..-+.+...+.++|+.+++ +.|+.+|++.. .... +++ ...|.+++
T Consensus 352 ~~~~f~~~v~~~~~~vlv~f~a~-wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n-~~~~-~~i---~~~Pt~~~ 425 (462)
T TIGR01130 352 VGKNFDEIVLDETKDVLVEFYAP-WCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAN-DVPP-FEV---EGFPTIKF 425 (462)
T ss_pred eCcCHHHHhccCCCeEEEEEECC-CCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCC-ccCC-CCc---cccCEEEE
Confidence 888888764 4467777766652 223345677788888888763 88999998753 3333 667 57899999
Q ss_pred EeCCcceeeccCCCCCCCCCCHHHHHHHHHHHHcCcccc
Q 020623 210 WDGNENYLTVIGSESIDEEDQGSQISRFLEGYREGRTEQ 248 (323)
Q Consensus 210 ~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~~~~~Gkl~~ 248 (323)
+...++.... ...+..+.++|.+|++.....+++.
T Consensus 426 ~~~~~~~~~~----~~~g~~~~~~l~~~l~~~~~~~~~~ 460 (462)
T TIGR01130 426 VPAGKKSEPV----PYDGDRTLEDFSKFIAKHATFPLEG 460 (462)
T ss_pred EeCCCCcCce----EecCcCCHHHHHHHHHhcCCCCCcC
Confidence 8765432110 0123578899999999988776654
|
Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs). |
| >KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.2e-07 Score=92.20 Aligned_cols=216 Identities=17% Similarity=0.199 Sum_probs=148.5
Q ss_pred HHHHHHHHhc----CCCceecCChHHHHHHHHhcCCcccEEEEecC-C-------hhHHHHHHHhhcCc---eeEEeecc
Q 020623 16 LLVRYLKKFV----APDVSILNSDAEVSDFVENAGTFFPLFIGFGL-D-------ESVMSNLALKYKKK---AWFAVAKD 80 (323)
Q Consensus 16 ~Iv~~l~k~~----~p~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~-~-------~~~f~~~A~~~~~~---~~F~~~~~ 80 (323)
.++.|+.-.. +..|.+|+ .+.+++++..++. ++|-|+. . .+.|.++|..++.. +..+-+++
T Consensus 10 ~~~~~~~~a~~~~~~~~Vl~Lt-~dnf~~~i~~~~~---vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDa 85 (493)
T KOG0190|consen 10 LPVASSEAASVPKAEEDVLVLT-KDNFKETINGHEF---VLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDA 85 (493)
T ss_pred cchhhhhhhhcCCcccceEEEe-cccHHHHhccCce---EEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeec
Confidence 4455555554 33477784 6999999999984 5666643 2 35899999988764 44555544
Q ss_pred c-chhhHhhcCCCCCCeEEEecCCCCCCccccCCCCHHHHHHHHHhhcCCCeeecCh-hhHHHhhcCCCcEEEEEEeCCC
Q 020623 81 F-SEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQNFLPLSVPINQ-DTLNLLKDDKRKIVLAIVEDET 158 (323)
Q Consensus 81 ~-~~~~~~~~~~~~~p~ivv~k~~~~~~~~y~g~~~~~~L~~fI~~~~~Plv~~~t~-~~~~~~~~~~~~~v~~f~~~~~ 158 (323)
. +.+++.+|++.++|++.+||++. ....|.|+.+.+.|.+|+++.+.|....+.. +.+..+.....-+++.|..+
T Consensus 86 t~~~~~~~~y~v~gyPTlkiFrnG~-~~~~Y~G~r~adgIv~wl~kq~gPa~~~l~~~~~a~~~l~~~~~~vig~F~d-- 162 (493)
T KOG0190|consen 86 TEESDLASKYEVRGYPTLKIFRNGR-SAQDYNGPREADGIVKWLKKQSGPASKTLKTVDEAEEFLSKKDVVVIGFFKD-- 162 (493)
T ss_pred chhhhhHhhhcCCCCCeEEEEecCC-cceeccCcccHHHHHHHHHhccCCCceecccHHHHHhhccCCceEEEEEecc--
Confidence 3 56788999999999999999842 2578999999999999999999999999984 56666665533333444332
Q ss_pred hhHHHHHHHHHHHHHHhCCC-eEEEEEcCcchhhHhhhcCCcCCCCCCeEEEEeC-CcceeeccCCCCCCCCCCHHHHHH
Q 020623 159 EEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDG-NENYLTVIGSESIDEEDQGSQISR 236 (323)
Q Consensus 159 ~e~~~~~~~~l~~~A~~~~~-l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI~~~-~~kY~~~~~~~~~~~~~t~~~I~~ 236 (323)
-+ ... ..+..+|...++ +.|++... ..++..+++ .....|.+++.+. +.++... ++.++.+.|.+
T Consensus 163 ~~-~~~--~~~~~~a~~l~~d~~F~~ts~---~~~~~~~~~-~~~~~~~i~l~kk~d~~~~~~------~~~~~~~~l~~ 229 (493)
T KOG0190|consen 163 LE-SLA--ESFFDAASKLRDDYKFAHTSD---SDVAKKLEL-NTEGTFPIVLFKKFDELLVKY------DGSFTPELLKK 229 (493)
T ss_pred cc-cch--HHHHHHHHhccccceeeccCc---HhHHhhccC-CCCCcceEEeccccccchhhc------ccccCHHHHHH
Confidence 11 112 456667777776 99985443 355677777 3333677788776 3333322 34688899999
Q ss_pred HHHHHHcCccccccc
Q 020623 237 FLEGYREGRTEQKKV 251 (323)
Q Consensus 237 Fi~~~~~Gkl~~~~k 251 (323)
||+-...+-+..+..
T Consensus 230 Fi~~~~~plv~~ft~ 244 (493)
T KOG0190|consen 230 FIQENSLPLVTEFTV 244 (493)
T ss_pred HHHHhcccccceecc
Confidence 999887665554443
|
|
| >cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle | Back alignment and domain information |
|---|
Probab=98.79 E-value=8.6e-08 Score=73.40 Aligned_cols=108 Identities=16% Similarity=0.259 Sum_probs=82.2
Q ss_pred CCeeecChhhHHHhhcCC--CcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC---eEEEEEcCcchhhHh----hhcCCc
Q 020623 129 PLSVPINQDTLNLLKDDK--RKIVLAIVEDETEEKSQKLVTTLKAAASANRE---LVFCYVGIKQFADFA----DTFEAN 199 (323)
Q Consensus 129 Plv~~~t~~~~~~~~~~~--~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~---l~F~~vd~~~~~~~~----~~~gl~ 199 (323)
|.+.+++++++....... .-++++|...++ .++-++...|+++|+++.+ +.|+|+|.+.|+-+. +.|||+
T Consensus 1 ptlrkl~~~~m~e~wedd~~g~~IvAFaee~d-pdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~FPllv~yWektF~ID 79 (120)
T cd03074 1 PTLRKLKPENMFETWEDDLDGIHIVAFAEEED-PDGYEFLEILKEVARDNTDNPDLSIIWIDPDDFPLLVPYWEKTFGID 79 (120)
T ss_pred CchhhccHHHHHHhhhcccCCceEEEEeccCC-ccHHHHHHHHHHHHHhcCcCCCceEEEECCccCchhhHHHHhhcCcc
Confidence 667888999988876543 456778887544 3467899999999999874 999999999997543 578994
Q ss_pred CCCCCCeEEEEeCC---cceeeccCCCCCCCCCCHHHHHHHHHHHH
Q 020623 200 KKSKLPKMVVWDGN---ENYLTVIGSESIDEEDQGSQISRFLEGYR 242 (323)
Q Consensus 200 ~~~~~P~ivI~~~~---~kY~~~~~~~~~~~~~t~~~I~~Fi~~~~ 242 (323)
-..|+|.++|.. +.++.+++.+ +..|.+.++.||++++
T Consensus 80 --l~~PqIGVV~vtdadSvW~~m~~~~---d~~t~~~Le~WiedVL 120 (120)
T cd03074 80 --LFRPQIGVVNVTDADSVWMEMDDDE---DLPTAEELEDWIEDVL 120 (120)
T ss_pred --cCCCceeeEecccccceeEeccccc---ccCcHHHHHHHHHhhC
Confidence 457999999962 4676664432 3378999999999874
|
It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin |
| >TIGR02187 GlrX_arch Glutaredoxin-like domain protein | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.7e-05 Score=70.16 Aligned_cols=167 Identities=16% Similarity=0.182 Sum_probs=113.6
Q ss_pred hHHHHHHHhhcCcee--EEeec-ccchhhHhhcCCCCCCeEEEecCCCCCCccccCCCCHHHHHHHHHhhc--CCCeeec
Q 020623 60 SVMSNLALKYKKKAW--FAVAK-DFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQNF--LPLSVPI 134 (323)
Q Consensus 60 ~~f~~~A~~~~~~~~--F~~~~-~~~~~~~~~~~~~~~p~ivv~k~~~~~~~~y~g~~~~~~L~~fI~~~~--~Plv~~~ 134 (323)
..++++|..+. ... +...+ +...+++.+|++...|++++|+++......|.|....+.|.+||.... -+.-..+
T Consensus 42 p~l~~la~~~~-~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g~~~~~~~~G~~~~~~l~~~i~~~~~~~~~~~~L 120 (215)
T TIGR02187 42 QLLEELSEVSP-KLKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEGKDGGIRYTGIPAGYEFAALIEDIVRVSQGEPGL 120 (215)
T ss_pred HHHHHHHhhCC-CceEEEEecCCcccHHHHHHcCCCccCEEEEEeCCeeeEEEEeecCCHHHHHHHHHHHHHhcCCCCCC
Confidence 46788888874 333 33332 246788999999999999999874222235778777788999988662 2344567
Q ss_pred ChhhHHHhhcCCCcEEEE-EEeCCChhHHHHHHHHHHHHHHhCCCeEEEEEcCcchhhHhhhcCCcCCCCCCeEEEEeCC
Q 020623 135 NQDTLNLLKDDKRKIVLA-IVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGN 213 (323)
Q Consensus 135 t~~~~~~~~~~~~~~v~~-f~~~~~~e~~~~~~~~l~~~A~~~~~l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI~~~~ 213 (323)
++.+...+-..++|+.+. |+.. .-..-+.+...+++++.++.++.|..+|.+.++...+.+|+ ...|.+++....
T Consensus 121 ~~~~~~~l~~~~~pv~I~~F~a~-~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~~~~~~~~~V---~~vPtl~i~~~~ 196 (215)
T TIGR02187 121 SEKTVELLQSLDEPVRIEVFVTP-TCPYCPYAVLMAHKFALANDKILGEMIEANENPDLAEKYGV---MSVPKIVINKGV 196 (215)
T ss_pred CHHHHHHHHhcCCCcEEEEEECC-CCCCcHHHHHHHHHHHHhcCceEEEEEeCCCCHHHHHHhCC---ccCCEEEEecCC
Confidence 777777766666777654 5542 11222455567888888876699999999988888899999 578999886533
Q ss_pred cceeeccCCCCCCCCCCHHHHHHHHHH
Q 020623 214 ENYLTVIGSESIDEEDQGSQISRFLEG 240 (323)
Q Consensus 214 ~kY~~~~~~~~~~~~~t~~~I~~Fi~~ 240 (323)
.+|. | ....+.+.+|+++
T Consensus 197 ~~~~---G------~~~~~~l~~~l~~ 214 (215)
T TIGR02187 197 EEFV---G------AYPEEQFLEYILS 214 (215)
T ss_pred EEEE---C------CCCHHHHHHHHHh
Confidence 2221 2 3567788888764
|
This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different. |
| >PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A | Back alignment and domain information |
|---|
Probab=98.42 E-value=3.4e-06 Score=72.01 Aligned_cols=121 Identities=23% Similarity=0.345 Sum_probs=89.1
Q ss_pred CCcccccCCC-CChHHHHHHHHHhcCCCceecCChHHHHHHHHhcCCcccEEEEecC-Ch-------hHHHHHHHhhcCc
Q 020623 2 HGIPTEYYGP-RKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFGL-DE-------SVMSNLALKYKKK 72 (323)
Q Consensus 2 ~G~~~eY~G~-R~a~~Iv~~l~k~~~p~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~-~~-------~~f~~~A~~~~~~ 72 (323)
++.+..|.|. .+.+.|.+|+.+..-|.+..++ .+.+..+...... ++++.|.. +. ..+.++|.++++.
T Consensus 51 ~~~~~~y~~~~~~~~~l~~fI~~~~~P~v~~~t-~~n~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ 127 (184)
T PF13848_consen 51 DEKPVVYDGDKFTPEELKKFIKKNSFPLVPELT-PENFEKLFSSPKP--PVLILFDNKDNESTEAFKKELQDIAKKFKGK 127 (184)
T ss_dssp TTSEEEESSSTTSHHHHHHHHHHHSSTSCEEES-TTHHHHHHSTSSE--EEEEEEETTTHHHHHHHHHHHHHHHHCTTTT
T ss_pred CCCceecccccCCHHHHHHHHHHhccccccccc-hhhHHHHhcCCCc--eEEEEEEcCCchhHHHHHHHHHHHHHhcCCe
Confidence 3457889998 8999999999999999999995 5788888777641 13444432 21 2567889999988
Q ss_pred eeEEeeccc-chhhHhhcCCC--CCCeEEEecCCCCCCc-cccCCCCHHHHHHHHHh
Q 020623 73 AWFAVAKDF-SEDTMVLYDFD--KVPALVALQPSYNEHN-IFYGPFDEEFLEEFIKQ 125 (323)
Q Consensus 73 ~~F~~~~~~-~~~~~~~~~~~--~~p~ivv~k~~~~~~~-~y~g~~~~~~L~~fI~~ 125 (323)
+.|..++.. .++++..+|+. ..|.++++....+... .+.|+++.+.|.+|+++
T Consensus 128 ~~f~~~d~~~~~~~~~~~~i~~~~~P~~vi~~~~~~~~~~~~~~~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 128 INFVYVDADDFPRLLKYFGIDEDDLPALVIFDSNKGKYYYLPEGEITPESIEKFLND 184 (184)
T ss_dssp SEEEEEETTTTHHHHHHTTTTTSSSSEEEEEETTTSEEEE--SSCGCHHHHHHHHHH
T ss_pred EEEEEeehHHhHHHHHHcCCCCccCCEEEEEECCCCcEEcCCCCCCCHHHHHHHhcC
Confidence 888877432 35677788876 7899999986433322 23588999999999974
|
... |
| >PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.5e-05 Score=61.16 Aligned_cols=100 Identities=8% Similarity=0.253 Sum_probs=78.5
Q ss_pred eeecChhhHHHhhcC-CCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC-eEEEEEcCcchhhHhhhcCCcCCCCCCeEE
Q 020623 131 SVPINQDTLNLLKDD-KRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMV 208 (323)
Q Consensus 131 v~~~t~~~~~~~~~~-~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~-l~F~~vd~~~~~~~~~~~gl~~~~~~P~iv 208 (323)
|..+|.+++...... ++++++.|... .-..-+.+...|.++|+.+++ +.|+.+|.+....+++.|++ ...|.++
T Consensus 1 v~~lt~~~f~~~i~~~~~~vvv~f~~~-~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v---~~~Pt~~ 76 (103)
T PF00085_consen 1 VIVLTDENFEKFINESDKPVVVYFYAP-WCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKELCKKYGV---KSVPTII 76 (103)
T ss_dssp SEEESTTTHHHHHTTTSSEEEEEEEST-TSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHHHHHTTC---SSSSEEE
T ss_pred CEECCHHHHHHHHHccCCCEEEEEeCC-CCCccccccceecccccccccccccchhhhhccchhhhccCC---CCCCEEE
Confidence 467899999987765 67887777763 234456788899999999995 99999999988889999999 6899999
Q ss_pred EEeCCcceeeccCCCCCCCCCCHHHHHHHHHH
Q 020623 209 VWDGNENYLTVIGSESIDEEDQGSQISRFLEG 240 (323)
Q Consensus 209 I~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~~ 240 (323)
++...+..... .+..+.++|.+||++
T Consensus 77 ~~~~g~~~~~~------~g~~~~~~l~~~i~~ 102 (103)
T PF00085_consen 77 FFKNGKEVKRY------NGPRNAESLIEFIEK 102 (103)
T ss_dssp EEETTEEEEEE------ESSSSHHHHHHHHHH
T ss_pred EEECCcEEEEE------ECCCCHHHHHHHHHc
Confidence 98875432222 234789999999985
|
Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A .... |
| >cd03071 PDI_b'_NRX PDIb' family, NRX subgroup, redox inactive TRX-like domain b'; composed of vertebrate nucleoredoxins (NRX) | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.4e-05 Score=61.37 Aligned_cols=102 Identities=18% Similarity=0.271 Sum_probs=71.3
Q ss_pred eecChhhHHHhhcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhC----C----C--eEEEEEcCcchhhHh-hhcCCcC
Q 020623 132 VPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASAN----R----E--LVFCYVGIKQFADFA-DTFEANK 200 (323)
Q Consensus 132 ~~~t~~~~~~~~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~----~----~--l~F~~vd~~~~~~~~-~~~gl~~ 200 (323)
..+|+.+.-.+.. .|-+++|++.++....+...+.|+.+|++. + + +.|.+...++....+ ++.+++
T Consensus 2 ~~Lse~~a~~Ln~--~p~lvlf~D~Edeg~l~~A~~llQpiAd~~~aka~~k~~dap~~f~~a~ede~tdsLRDf~nL~- 78 (116)
T cd03071 2 LELSESNAVQLNE--GPCLVLFVDSEDEGESEAAKQLIQPIAEKIIAKYKAKEEEAPLLFFVAGEDDMTDSLRDYTNLP- 78 (116)
T ss_pred ccccHHHHHhhcC--CceEEEEecccchhhHHHHHHHHHHHHHHHHHHhhccCCCcceeeeeeccchHHHHHHHhcCCC-
Confidence 3567777766654 577788887543324677777888777752 1 2 777776655555544 566784
Q ss_pred CCCCCeEEEEeC-C-cceeeccCCCCCCCCCCHHHHHHHHHHHHc
Q 020623 201 KSKLPKMVVWDG-N-ENYLTVIGSESIDEEDQGSQISRFLEGYRE 243 (323)
Q Consensus 201 ~~~~P~ivI~~~-~-~kY~~~~~~~~~~~~~t~~~I~~Fi~~~~~ 243 (323)
..-|.++|+|. + ++|..+ ..++|.+++.+|+.+|++
T Consensus 79 -d~~P~LviLDip~r~~~v~~------~eeIT~e~~~~fv~~ylA 116 (116)
T cd03071 79 -EAAPLLTILDMSARAKYVMD------VEEITPAIVEAFVSDFLA 116 (116)
T ss_pred -ccCceEEEEeccccceEeCc------hHhcCHHHHHHHHHHhhC
Confidence 77899999996 3 467664 356999999999999974
|
NRX is a 400-amino acid nuclear protein with one redox active TRX domain followed by one redox inactive TRX-like domain homologous to the b' domain of PDI. In vitro studies show that NRX has thiol oxidoreductase activity and that it may be involved in the redox regulation of transcription, in a manner different from that of TRX or glutaredoxin. NRX enhances the activation of NF-kB by TNFalpha, as well as PMA-1 induced AP-1 and FK-induced CREB activation. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. The mouse NRX gene is implicated in streptozotocin-induced diabetes. Similar to PDI, the b' domain of NRX is likely involved in substrate recognition. |
| >cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains | Back alignment and domain information |
|---|
Probab=98.19 E-value=3.6e-05 Score=59.39 Aligned_cols=99 Identities=10% Similarity=0.110 Sum_probs=75.2
Q ss_pred CCeeecChhhHHHhhcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC-eEEEEEcCcchhhHhhhcCCcCCCCCCeE
Q 020623 129 PLSVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKM 207 (323)
Q Consensus 129 Plv~~~t~~~~~~~~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~-l~F~~vd~~~~~~~~~~~gl~~~~~~P~i 207 (323)
|-+.++|..++......++++++.|... .-..-..+...+.++|+++++ +.|+.+|++..+.+++.+++ ...|.+
T Consensus 1 ~~~~~l~~~~f~~~v~~~~~~~v~f~a~-wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~~~~~~v---~~~Pt~ 76 (101)
T cd03003 1 PEIVTLDRGDFDAAVNSGEIWFVNFYSP-RCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRMLCRSQGV---NSYPSL 76 (101)
T ss_pred CCeEEcCHhhHHHHhcCCCeEEEEEECC-CChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHHHHHcCC---CccCEE
Confidence 5678899999998877667777777653 223456788899999999998 99999999988888999999 589999
Q ss_pred EEEeCCcceeeccCCCCCCCCCCHHHHHHH
Q 020623 208 VVWDGNENYLTVIGSESIDEEDQGSQISRF 237 (323)
Q Consensus 208 vI~~~~~kY~~~~~~~~~~~~~t~~~I~~F 237 (323)
+++......... .+..+.+.|.+|
T Consensus 77 ~~~~~g~~~~~~------~G~~~~~~l~~f 100 (101)
T cd03003 77 YVFPSGMNPEKY------YGDRSKESLVKF 100 (101)
T ss_pred EEEcCCCCcccC------CCCCCHHHHHhh
Confidence 888643221111 345678888877
|
This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. |
| >PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle [] | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00032 Score=64.93 Aligned_cols=198 Identities=13% Similarity=0.112 Sum_probs=120.3
Q ss_pred ceecCChHHHHHHHHhcCCcccEEEEecC----Chh---------HHHHHHHhhcC--ceeEEeecc-cchhhHhhcCCC
Q 020623 29 VSILNSDAEVSDFVENAGTFFPLFIGFGL----DES---------VMSNLALKYKK--KAWFAVAKD-FSEDTMVLYDFD 92 (323)
Q Consensus 29 v~~i~s~~~l~~fl~~~~~~~~~vVgf~~----~~~---------~f~~~A~~~~~--~~~F~~~~~-~~~~~~~~~~~~ 92 (323)
|..| |.+++++++++.++ .+|.|.. +.. .+-++|.+... .+-||.++. -+..+++++|+.
T Consensus 36 Vi~L-neKNfk~~lKkyd~---l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~klAKKLgv~ 111 (383)
T PF01216_consen 36 VIDL-NEKNFKRALKKYDV---LVLYYHEPVESDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDAKLAKKLGVE 111 (383)
T ss_dssp CEEE--TTTHHHHHHH-SE---EEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTHHHHHHHT--
T ss_pred eEEc-chhHHHHHHHhhcE---EEEEEecCCccCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHHHHHHhcCcc
Confidence 7788 57999999999985 5555542 111 23355554432 367887753 366789999998
Q ss_pred CCCeEEEecCCCCCCccccCCCCHHHHHHHHHhhcCCCeeecChhhHHHhhc--CCCcEEEEEEeCCChhHHHHHHHHHH
Q 020623 93 KVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQNFLPLSVPINQDTLNLLKD--DKRKIVLAIVEDETEEKSQKLVTTLK 170 (323)
Q Consensus 93 ~~p~ivv~k~~~~~~~~y~g~~~~~~L~~fI~~~~~Plv~~~t~~~~~~~~~--~~~~~v~~f~~~~~~e~~~~~~~~l~ 170 (323)
..++|.+|+. ++...|+|.++.+-|..||..-.-.+|..++.+.=.+.|. ...+-++.|...+ .+. ..+.+.
T Consensus 112 E~~SiyVfkd--~~~IEydG~~saDtLVeFl~dl~edPVeiIn~~~e~~~Fe~ied~~klIGyFk~~---~s~-~yk~Fe 185 (383)
T PF01216_consen 112 EEGSIYVFKD--GEVIEYDGERSADTLVEFLLDLLEDPVEIINNKHELKAFERIEDDIKLIGYFKSE---DSE-HYKEFE 185 (383)
T ss_dssp STTEEEEEET--TEEEEE-S--SHHHHHHHHHHHHSSSEEEE-SHHHHHHHHH--SS-EEEEE-SST---TSH-HHHHHH
T ss_pred ccCcEEEEEC--CcEEEecCccCHHHHHHHHHHhcccchhhhcChhhhhhhhhcccceeEEEEeCCC---CcH-HHHHHH
Confidence 8999999985 6777899999999999999999989999998754333222 1245566666532 223 447899
Q ss_pred HHHHhCCC-eEEEEEcCcchhhHhhhcCCcCCCCCCeEEEEeC--CcceeeccCCCCCCCCCCHHHHHHHHHHHHcCccc
Q 020623 171 AAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDG--NENYLTVIGSESIDEEDQGSQISRFLEGYREGRTE 247 (323)
Q Consensus 171 ~~A~~~~~-l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI~~~--~~kY~~~~~~~~~~~~~t~~~I~~Fi~~~~~Gkl~ 247 (323)
++|..|.. +.|.-+-. +.++..||+ + +--+-...+ +.--..+ ....+.+.|.+||+.-..-.++
T Consensus 186 eAAe~F~p~IkFfAtfd---~~vAk~L~l-K---~nev~fyepF~~~pi~ip------~~p~~e~e~~~fi~~h~rptlr 252 (383)
T PF01216_consen 186 EAAEHFQPYIKFFATFD---KKVAKKLGL-K---LNEVDFYEPFMDEPITIP------GKPYTEEELVEFIEEHKRPTLR 252 (383)
T ss_dssp HHHHHCTTTSEEEEE-S---HHHHHHHT--S---TT-EEEE-TTSSSEEEES------SSS--HHHHHHHHHHT-S-SEE
T ss_pred HHHHhhcCceeEEEEec---chhhhhcCc-c---ccceeeeccccCCCccCC------CCCCCHHHHHHHHHHhchhHhh
Confidence 99999988 88765432 456778888 4 223444554 2222222 2357899999999988766555
Q ss_pred cc
Q 020623 248 QK 249 (323)
Q Consensus 248 ~~ 249 (323)
..
T Consensus 253 kl 254 (383)
T PF01216_consen 253 KL 254 (383)
T ss_dssp E-
T ss_pred hC
Confidence 43
|
It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A. |
| >cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells | Back alignment and domain information |
|---|
Probab=98.16 E-value=3e-05 Score=61.61 Aligned_cols=94 Identities=14% Similarity=0.154 Sum_probs=71.5
Q ss_pred ceecCChHHHHHHHHhcCCcccEEEEecC---Ch---hHHHHHHHhhcC---ceeEEeecc------cchhhHhhcCCC-
Q 020623 29 VSILNSDAEVSDFVENAGTFFPLFIGFGL---DE---SVMSNLALKYKK---KAWFAVAKD------FSEDTMVLYDFD- 92 (323)
Q Consensus 29 v~~i~s~~~l~~fl~~~~~~~~~vVgf~~---~~---~~f~~~A~~~~~---~~~F~~~~~------~~~~~~~~~~~~- 92 (323)
+..| +.+.++++++.++. ++|-|+. .- +.|+++|.++.. .+.++.++. .+.+++.+|+++
T Consensus 3 ~v~L-~~~nF~~~v~~~~~---vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~~v~lakVd~~d~~~~~~~~L~~~y~I~~ 78 (116)
T cd03007 3 CVDL-DTVTFYKVIPKFKY---SLVKFDTAYPYGEKHEAFTRLAESSASATDDLLVAEVGIKDYGEKLNMELGERYKLDK 78 (116)
T ss_pred eeEC-ChhhHHHHHhcCCc---EEEEEeCCCCCCCChHHHHHHHHHHHhhcCceEEEEEecccccchhhHHHHHHhCCCc
Confidence 5667 46899999988884 6777754 22 478889887732 466776643 246799999998
Q ss_pred -CCCeEEEecCCC-CCCccccCC-CCHHHHHHHHHhh
Q 020623 93 -KVPALVALQPSY-NEHNIFYGP-FDEEFLEEFIKQN 126 (323)
Q Consensus 93 -~~p~ivv~k~~~-~~~~~y~g~-~~~~~L~~fI~~~ 126 (323)
+.|+|.+|+++. ++...|.|+ .+.+.|.+||+++
T Consensus 79 ~gyPTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 79 ESYPVIYLFHGGDFENPVPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred CCCCEEEEEeCCCcCCCccCCCCcccHHHHHHHHHhc
Confidence 899999999852 345689996 9999999999986
|
It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase. |
| >PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms | Back alignment and domain information |
|---|
Probab=98.07 E-value=2.8e-05 Score=59.57 Aligned_cols=94 Identities=24% Similarity=0.453 Sum_probs=71.2
Q ss_pred ceecCChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeecc-cchhhHhhcCCCCCCeEEE
Q 020623 29 VSILNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAKD-FSEDTMVLYDFDKVPALVA 99 (323)
Q Consensus 29 v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~~-~~~~~~~~~~~~~~p~ivv 99 (323)
|..+ +.+++++.+.+.+. +++|.|... .+.|.++|..+.+.+.|+.++. ...+++.++++...|++++
T Consensus 1 v~~l-t~~~f~~~i~~~~~--~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~ 77 (103)
T PF00085_consen 1 VIVL-TDENFEKFINESDK--PVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKELCKKYGVKSVPTIIF 77 (103)
T ss_dssp SEEE-STTTHHHHHTTTSS--EEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHHHHHTTCSSSSEEEE
T ss_pred CEEC-CHHHHHHHHHccCC--CEEEEEeCCCCCccccccceecccccccccccccchhhhhccchhhhccCCCCCCEEEE
Confidence 3556 56889998887332 577777643 2478899999887788877743 3567889999999999999
Q ss_pred ecCCCCCCccccCCCCHHHHHHHHHhh
Q 020623 100 LQPSYNEHNIFYGPFDEEFLEEFIKQN 126 (323)
Q Consensus 100 ~k~~~~~~~~y~g~~~~~~L~~fI~~~ 126 (323)
|+++ .....|.|..+.+.|.+||++|
T Consensus 78 ~~~g-~~~~~~~g~~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 78 FKNG-KEVKRYNGPRNAESLIEFIEKH 103 (103)
T ss_dssp EETT-EEEEEEESSSSHHHHHHHHHHH
T ss_pred EECC-cEEEEEECCCCHHHHHHHHHcC
Confidence 9873 2233678999999999999986
|
Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A .... |
| >cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00012 Score=56.64 Aligned_cols=100 Identities=16% Similarity=0.280 Sum_probs=74.4
Q ss_pred CCeeecChhhHHHhh-cCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC-eEEEEEcCcchhhHhhhcCCcCCCCCCe
Q 020623 129 PLSVPINQDTLNLLK-DDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPK 206 (323)
Q Consensus 129 Plv~~~t~~~~~~~~-~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~-l~F~~vd~~~~~~~~~~~gl~~~~~~P~ 206 (323)
|.+.+++..++.... ..++++++.|... .-..-+.+...+.++|+++++ +.|+.+|++....+++.+|+ ...|.
T Consensus 1 ~~v~~l~~~~f~~~i~~~~~~v~v~f~a~-wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i---~~~Pt 76 (104)
T cd03004 1 PSVITLTPEDFPELVLNRKEPWLVDFYAP-WCGPCQALLPELRKAARALKGKVKVGSVDCQKYESLCQQANI---RAYPT 76 (104)
T ss_pred CcceEcCHHHHHHHHhcCCCeEEEEEECC-CCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHHHHHcCC---CcccE
Confidence 567789999998864 4456777777653 223456788899999999987 99999999988888899999 57999
Q ss_pred EEEEeCC-cceeeccCCCCCCCCCC-HHHHHHHH
Q 020623 207 MVVWDGN-ENYLTVIGSESIDEEDQ-GSQISRFL 238 (323)
Q Consensus 207 ivI~~~~-~kY~~~~~~~~~~~~~t-~~~I~~Fi 238 (323)
++++..+ +.-... .+..+ .++|.+||
T Consensus 77 ~~~~~~g~~~~~~~------~G~~~~~~~l~~~i 104 (104)
T cd03004 77 IRLYPGNASKYHSY------NGWHRDADSILEFI 104 (104)
T ss_pred EEEEcCCCCCceEc------cCCCCCHHHHHhhC
Confidence 9998875 322222 23344 78888875
|
This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus. |
| >cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains | Back alignment and domain information |
|---|
Probab=97.99 E-value=8.8e-05 Score=57.40 Aligned_cols=94 Identities=17% Similarity=0.181 Sum_probs=70.0
Q ss_pred CCceecCChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeecc-cchhhHhhcCCCCCCeE
Q 020623 27 PDVSILNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAKD-FSEDTMVLYDFDKVPAL 97 (323)
Q Consensus 27 p~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~~-~~~~~~~~~~~~~~p~i 97 (323)
|.+..+ +.+++++.+.+.+. +++|-|... ...|.++|.++.+.+.|+..+. ...+++.++++...|++
T Consensus 1 ~~v~~l-~~~~f~~~i~~~~~--~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~ 77 (104)
T cd03004 1 PSVITL-TPEDFPELVLNRKE--PWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYESLCQQANIRAYPTI 77 (104)
T ss_pred CcceEc-CHHHHHHHHhcCCC--eEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHHHHHcCCCcccEE
Confidence 456778 57889888766543 577777543 2478899999877777876643 35678889999999999
Q ss_pred EEecCCCCCCccccCCCC-HHHHHHHH
Q 020623 98 VALQPSYNEHNIFYGPFD-EEFLEEFI 123 (323)
Q Consensus 98 vv~k~~~~~~~~y~g~~~-~~~L~~fI 123 (323)
++|+++.+....|.|..+ .++|.+||
T Consensus 78 ~~~~~g~~~~~~~~G~~~~~~~l~~~i 104 (104)
T cd03004 78 RLYPGNASKYHSYNGWHRDADSILEFI 104 (104)
T ss_pred EEEcCCCCCceEccCCCCCHHHHHhhC
Confidence 999874344556889876 89999986
|
This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus. |
| >cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain) | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00029 Score=54.06 Aligned_cols=98 Identities=11% Similarity=0.107 Sum_probs=71.7
Q ss_pred eeecChhhHHHhhcC-CCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC-eEEEEEcCcchhhHhhhcCCcCCCCCCeEE
Q 020623 131 SVPINQDTLNLLKDD-KRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMV 208 (323)
Q Consensus 131 v~~~t~~~~~~~~~~-~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~-l~F~~vd~~~~~~~~~~~gl~~~~~~P~iv 208 (323)
|.+++.+++...... +.++++.|... .-..-+.+...+.++|+++++ +.|+.+|.+..+.+++.||+ ...|.++
T Consensus 2 v~~l~~~~~~~~i~~~~~~vlv~f~a~-~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i---~~~P~~~ 77 (103)
T cd03001 2 VVELTDSNFDKKVLNSDDVWLVEFYAP-WCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLAQQYGV---RGFPTIK 77 (103)
T ss_pred eEEcCHHhHHHHHhcCCCcEEEEEECC-CCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHHHHCCC---CccCEEE
Confidence 567888889876544 44466666552 223456777889999999887 99999999988888899999 5799999
Q ss_pred EEeCC-cceeeccCCCCCCCCCCHHHHHHHH
Q 020623 209 VWDGN-ENYLTVIGSESIDEEDQGSQISRFL 238 (323)
Q Consensus 209 I~~~~-~kY~~~~~~~~~~~~~t~~~I~~Fi 238 (323)
+.+.. ...... .+..+.++|.+|+
T Consensus 78 ~~~~~~~~~~~~------~g~~~~~~l~~~~ 102 (103)
T cd03001 78 VFGAGKNSPQDY------QGGRTAKAIVSAA 102 (103)
T ss_pred EECCCCcceeec------CCCCCHHHHHHHh
Confidence 98765 222222 3457888999886
|
Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain. |
| >KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0001 Score=66.95 Aligned_cols=139 Identities=19% Similarity=0.276 Sum_probs=94.4
Q ss_pred HHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcCce-----eEEeecc-cchhhHhhcCCCCCCeEEEec
Q 020623 36 AEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKKKA-----WFAVAKD-FSEDTMVLYDFDKVPALVALQ 101 (323)
Q Consensus 36 ~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~-----~F~~~~~-~~~~~~~~~~~~~~p~ivv~k 101 (323)
+.++..+..++ +++|.|..+ .+.|.++|.+++.++ .+|.++. ..++++.+|.+.++|++.+|+
T Consensus 4 ~N~~~il~s~e---lvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvfr 80 (375)
T KOG0912|consen 4 ENIDSILDSNE---LVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVFR 80 (375)
T ss_pred ccHHHhhccce---EEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeeee
Confidence 45677888887 478888653 358999998887654 4565543 467789999999999999999
Q ss_pred CCCCCCccccCCCCHHHHHHHHHhhcCCCeeecChh-hHHHhhcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC-e
Q 020623 102 PSYNEHNIFYGPFDEEFLEEFIKQNFLPLSVPINQD-TLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-L 179 (323)
Q Consensus 102 ~~~~~~~~y~g~~~~~~L~~fI~~~~~Plv~~~t~~-~~~~~~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~-l 179 (323)
++.=-.-.|.|..+.+.|.+||++..--.+.++..- ....+...++..++++....+. .+| +.++++|.-+|+ .
T Consensus 81 nG~~~~rEYRg~RsVeaL~efi~kq~s~~i~Ef~sl~~l~n~~~p~K~~vIgyF~~kds---pey-~~~~kva~~lr~dc 156 (375)
T KOG0912|consen 81 NGEMMKREYRGQRSVEALIEFIEKQLSDPINEFESLDQLQNLDIPSKRTVIGYFPSKDS---PEY-DNLRKVASLLRDDC 156 (375)
T ss_pred ccchhhhhhccchhHHHHHHHHHHHhccHHHHHHhHHHHHhhhccccceEEEEeccCCC---chH-HHHHHHHHHHhhcc
Confidence 854445568899999999999998877667777653 3444544234445555442122 333 456666666654 4
Q ss_pred EE
Q 020623 180 VF 181 (323)
Q Consensus 180 ~F 181 (323)
.|
T Consensus 157 ~f 158 (375)
T KOG0912|consen 157 VF 158 (375)
T ss_pred EE
Confidence 44
|
|
| >KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0012 Score=63.54 Aligned_cols=174 Identities=17% Similarity=0.245 Sum_probs=125.0
Q ss_pred hHHHHHHHhhcCceeEEeecc-cchhhHhhcCCCCCCeEEEecCCCCCCccccCCCCHHHHHHHHHhhcCCC--------
Q 020623 60 SVMSNLALKYKKKAWFAVAKD-FSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQNFLPL-------- 130 (323)
Q Consensus 60 ~~f~~~A~~~~~~~~F~~~~~-~~~~~~~~~~~~~~p~ivv~k~~~~~~~~y~g~~~~~~L~~fI~~~~~Pl-------- 130 (323)
..|.++|..++....++.++. ...+++..|++.+.|++.+|+++ .....|.|..+.+.+..|+....-+.
T Consensus 67 ~~~~~~~~~l~~~~~~~~vd~~~~~~~~~~y~i~gfPtl~~f~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (383)
T KOG0191|consen 67 PTYKKLAKALKGKVKIGAVDCDEHKDLCEKYGIQGFPTLKVFRPG-KKPIDYSGPRNAESLAEFLIKELEPSVKKLVEGE 145 (383)
T ss_pred hHHHHHHHHhcCceEEEEeCchhhHHHHHhcCCccCcEEEEEcCC-CceeeccCcccHHHHHHHHHHhhccccccccCCc
Confidence 578899999998777777743 46788999999999999999985 45667888888899999999887654
Q ss_pred eeecChhhHHHhhcC-CCcEEEEEEeCCChhHHHHHHHHHHHHHHhCC--C-eEEEEEcCcchhhHhhhcCCcCCCCCCe
Q 020623 131 SVPINQDTLNLLKDD-KRKIVLAIVEDETEEKSQKLVTTLKAAASANR--E-LVFCYVGIKQFADFADTFEANKKSKLPK 206 (323)
Q Consensus 131 v~~~t~~~~~~~~~~-~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~--~-l~F~~vd~~~~~~~~~~~gl~~~~~~P~ 206 (323)
+.+++..++..+... ..+.++.|... --..-+.+...+.++|+.+. + +..+-+|++......+.+++ ..+|.
T Consensus 146 v~~l~~~~~~~~~~~~~~~~lv~f~aP-wc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v---~~~Pt 221 (383)
T KOG0191|consen 146 VFELTKDNFDETVKDSDADWLVEFYAP-WCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVHKSLASRLEV---RGYPT 221 (383)
T ss_pred eEEccccchhhhhhccCcceEEEEecc-ccHHhhhcChHHHHHHHHhccCcceEEEeeccchHHHHhhhhcc---cCCce
Confidence 555555666654332 33334444332 11234566678888888775 3 88888888766677888888 68999
Q ss_pred EEEEeCCcc--eeeccCCCCCCCCCCHHHHHHHHHHHHcCc
Q 020623 207 MVVWDGNEN--YLTVIGSESIDEEDQGSQISRFLEGYREGR 245 (323)
Q Consensus 207 ivI~~~~~k--Y~~~~~~~~~~~~~t~~~I~~Fi~~~~~Gk 245 (323)
+.+...+.+ +++ ++.-+.+.|.+|+++...-.
T Consensus 222 ~~~f~~~~~~~~~~-------~~~R~~~~i~~~v~~~~~~~ 255 (383)
T KOG0191|consen 222 LKLFPPGEEDIYYY-------SGLRDSDSIVSFVEKKERRN 255 (383)
T ss_pred EEEecCCCcccccc-------cccccHHHHHHHHHhhcCCC
Confidence 987776554 222 23468899999999987764
|
|
| >cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain) | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00027 Score=54.26 Aligned_cols=92 Identities=13% Similarity=0.102 Sum_probs=68.5
Q ss_pred ceecCChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeecc-cchhhHhhcCCCCCCeEEE
Q 020623 29 VSILNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAKD-FSEDTMVLYDFDKVPALVA 99 (323)
Q Consensus 29 v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~~-~~~~~~~~~~~~~~p~ivv 99 (323)
|..+ +.+++++++.+.+. +++|.|... .+.|.++|.++...+.|+..+. ...+++.++++.+.|++++
T Consensus 2 v~~l-~~~~~~~~i~~~~~--~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~ 78 (103)
T cd03001 2 VVEL-TDSNFDKKVLNSDD--VWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLAQQYGVRGFPTIKV 78 (103)
T ss_pred eEEc-CHHhHHHHHhcCCC--cEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHHHHCCCCccCEEEE
Confidence 5667 46888888876653 466666542 2467888988877777776632 3567888999999999999
Q ss_pred ecCCCCCCccccCCCCHHHHHHHH
Q 020623 100 LQPSYNEHNIFYGPFDEEFLEEFI 123 (323)
Q Consensus 100 ~k~~~~~~~~y~g~~~~~~L~~fI 123 (323)
|+++......|.|+.+.+.|.+|+
T Consensus 79 ~~~~~~~~~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 79 FGAGKNSPQDYQGGRTAKAIVSAA 102 (103)
T ss_pred ECCCCcceeecCCCCCHHHHHHHh
Confidence 987534455788999999999997
|
Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain. |
| >cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain) | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00022 Score=58.05 Aligned_cols=100 Identities=21% Similarity=0.252 Sum_probs=74.7
Q ss_pred CCceecCChHHHHHHHHhcCCcccEEEEecCC-----h-------hHHHHHHHhhcCc-eeEEeeccc-chhhHhhcCCC
Q 020623 27 PDVSILNSDAEVSDFVENAGTFFPLFIGFGLD-----E-------SVMSNLALKYKKK-AWFAVAKDF-SEDTMVLYDFD 92 (323)
Q Consensus 27 p~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~-----~-------~~f~~~A~~~~~~-~~F~~~~~~-~~~~~~~~~~~ 92 (323)
|-+.+|++.+.+++....++ .++|+|.++ . +.+.++|++++.. +.|..++.. ...+...+|+.
T Consensus 2 ~~~~~l~~~~~~~~~C~~~~---~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~~~~~fgl~ 78 (130)
T cd02983 2 PEIIELTSEDVFEETCEEKQ---LCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQLDLEEALNIG 78 (130)
T ss_pred CceEEecCHHHHHhhccCCC---eEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccHHHHHHcCCC
Confidence 55788999888888887765 589998652 1 2678999999999 888877432 23467788874
Q ss_pred --CCCeEEEecCCCCCCcc-ccCCCCHHHHHHHHHhhcCCC
Q 020623 93 --KVPALVALQPSYNEHNI-FYGPFDEEFLEEFIKQNFLPL 130 (323)
Q Consensus 93 --~~p~ivv~k~~~~~~~~-y~g~~~~~~L~~fI~~~~~Pl 130 (323)
..|++++++.. +.++. +.|+++.+.|.+|+.+..-.-
T Consensus 79 ~~~~P~v~i~~~~-~~KY~~~~~~~t~e~i~~Fv~~~l~Gk 118 (130)
T cd02983 79 GFGYPAMVAINFR-KMKFATLKGSFSEDGINEFLRELSYGR 118 (130)
T ss_pred ccCCCEEEEEecc-cCccccccCccCHHHHHHHHHHHHcCC
Confidence 47999999873 32544 679999999999998775443
|
Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI. |
| >PRK10996 thioredoxin 2; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00045 Score=56.80 Aligned_cols=101 Identities=11% Similarity=0.207 Sum_probs=74.8
Q ss_pred eeecChhhHHHhhcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC-eEEEEEcCcchhhHhhhcCCcCCCCCCeEEE
Q 020623 131 SVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVV 209 (323)
Q Consensus 131 v~~~t~~~~~~~~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~-l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI 209 (323)
+..++.+++..+...++++++.|... .-..-..+...|.++++++.+ +.|+.+|.+..+.+++.|++ ...|.+++
T Consensus 37 ~i~~~~~~~~~~i~~~k~vvv~F~a~-wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~V---~~~Ptlii 112 (139)
T PRK10996 37 VINATGETLDKLLQDDLPVVIDFWAP-WCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELSARFRI---RSIPTIMI 112 (139)
T ss_pred CEEcCHHHHHHHHhCCCeEEEEEECC-CCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHHHHhcCC---CccCEEEE
Confidence 44567778887777677777777653 223345677889999999887 99999999988888999999 57999998
Q ss_pred EeCCcceeeccCCCCCCCCCCHHHHHHHHHHH
Q 020623 210 WDGNENYLTVIGSESIDEEDQGSQISRFLEGY 241 (323)
Q Consensus 210 ~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~~~ 241 (323)
.+..+..... .+..+.+.|.+|++..
T Consensus 113 ~~~G~~v~~~------~G~~~~e~l~~~l~~~ 138 (139)
T PRK10996 113 FKNGQVVDML------NGAVPKAPFDSWLNEA 138 (139)
T ss_pred EECCEEEEEE------cCCCCHHHHHHHHHHh
Confidence 8743333322 2346788999999865
|
|
| >TIGR01126 pdi_dom protein disulfide-isomerase domain | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0003 Score=53.65 Aligned_cols=97 Identities=11% Similarity=0.172 Sum_probs=72.2
Q ss_pred cChhhHHHhhcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC---eEEEEEcCcchhhHhhhcCCcCCCCCCeEEEE
Q 020623 134 INQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE---LVFCYVGIKQFADFADTFEANKKSKLPKMVVW 210 (323)
Q Consensus 134 ~t~~~~~~~~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~---l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI~ 210 (323)
++.+++......++++++.|... .-..-+.+...+.++|+.+++ +.|+.+|.+..+.+.+.||+ ...|.++++
T Consensus 1 l~~~~~~~~~~~~~~~~i~f~~~-~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i---~~~P~~~~~ 76 (102)
T TIGR01126 1 LTASNFDDIVLSNKDVLVEFYAP-WCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGV---SGFPTIKFF 76 (102)
T ss_pred CchhhHHHHhccCCcEEEEEECC-CCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCC---CcCCEEEEe
Confidence 46678888776677777777653 223345566778888888774 99999999888888889999 579999998
Q ss_pred eCCcc-eeeccCCCCCCCCCCHHHHHHHHHHH
Q 020623 211 DGNEN-YLTVIGSESIDEEDQGSQISRFLEGY 241 (323)
Q Consensus 211 ~~~~k-Y~~~~~~~~~~~~~t~~~I~~Fi~~~ 241 (323)
+.++. +.+ .+..+.++|..|+++.
T Consensus 77 ~~~~~~~~~-------~g~~~~~~l~~~i~~~ 101 (102)
T TIGR01126 77 PKGKKPVDY-------EGGRDLEAIVEFVNEK 101 (102)
T ss_pred cCCCcceee-------cCCCCHHHHHHHHHhc
Confidence 87653 333 3457888999999864
|
This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK. |
| >PRK09381 trxA thioredoxin; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00079 Score=52.47 Aligned_cols=101 Identities=13% Similarity=0.208 Sum_probs=74.1
Q ss_pred eeecChhhHHH-hhcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC-eEEEEEcCcchhhHhhhcCCcCCCCCCeEE
Q 020623 131 SVPINQDTLNL-LKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMV 208 (323)
Q Consensus 131 v~~~t~~~~~~-~~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~-l~F~~vd~~~~~~~~~~~gl~~~~~~P~iv 208 (323)
+.+++.+++.. +...++++++.|... .-..-..+...++++|+++++ +.|+.+|.+..+.++..|++ ..+|.++
T Consensus 5 v~~~~~~~~~~~v~~~~~~vvv~f~~~-~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v---~~~Pt~~ 80 (109)
T PRK09381 5 IIHLTDDSFDTDVLKADGAILVDFWAE-WCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGI---RGIPTLL 80 (109)
T ss_pred ceeeChhhHHHHHhcCCCeEEEEEECC-CCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCC---CcCCEEE
Confidence 56778888875 455567777777653 122346677899999999987 99999999887788888998 5799999
Q ss_pred EEeCCc-ceeeccCCCCCCCCCCHHHHHHHHHHHH
Q 020623 209 VWDGNE-NYLTVIGSESIDEEDQGSQISRFLEGYR 242 (323)
Q Consensus 209 I~~~~~-kY~~~~~~~~~~~~~t~~~I~~Fi~~~~ 242 (323)
++.... .+.+ .+..+.+.|.+|++..+
T Consensus 81 ~~~~G~~~~~~-------~G~~~~~~l~~~i~~~~ 108 (109)
T PRK09381 81 LFKNGEVAATK-------VGALSKGQLKEFLDANL 108 (109)
T ss_pred EEeCCeEEEEe-------cCCCCHHHHHHHHHHhc
Confidence 886433 2322 23467888999988764
|
|
| >cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00068 Score=52.65 Aligned_cols=93 Identities=14% Similarity=0.156 Sum_probs=67.7
Q ss_pred ceecCChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeecc-c--chhhHhhcCCCCCCeE
Q 020623 29 VSILNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAKD-F--SEDTMVLYDFDKVPAL 97 (323)
Q Consensus 29 v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~~-~--~~~~~~~~~~~~~p~i 97 (323)
+..++ .+++++.+.+.+. +++|-|... ...|.++|..+.+.+.|+..+. . ..+++.++++...|++
T Consensus 2 v~~l~-~~~~~~~i~~~~~--~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~ 78 (109)
T cd03002 2 VYELT-PKNFDKVVHNTNY--TTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQGFPTL 78 (109)
T ss_pred eEEcc-hhhHHHHHhcCCC--eEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCCcCCEE
Confidence 56674 5788888877664 567777542 2478899998877666655432 2 4567889999999999
Q ss_pred EEecCCCC----CCccccCCCCHHHHHHHHH
Q 020623 98 VALQPSYN----EHNIFYGPFDEEFLEEFIK 124 (323)
Q Consensus 98 vv~k~~~~----~~~~y~g~~~~~~L~~fI~ 124 (323)
++|+++.. ....|.|+.+.+.|.+||.
T Consensus 79 ~~~~~~~~~~~~~~~~~~G~~~~~~l~~fi~ 109 (109)
T cd03002 79 KVFRPPKKASKHAVEDYNGERSAKAIVDFVL 109 (109)
T ss_pred EEEeCCCcccccccccccCccCHHHHHHHhC
Confidence 99987531 2346789999999999984
|
MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity. |
| >cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0012 Score=52.19 Aligned_cols=105 Identities=10% Similarity=0.175 Sum_probs=73.2
Q ss_pred CeeecCh-hhHHHhhcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCCeEEEEEcCcchhhHhhhcCCcCCCCCCeEE
Q 020623 130 LSVPINQ-DTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMV 208 (323)
Q Consensus 130 lv~~~t~-~~~~~~~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~l~F~~vd~~~~~~~~~~~gl~~~~~~P~iv 208 (323)
.+.+++. +.+......++++++.|... .-..-+.+...|.++|++++++.|+.+|.+..+.+++.|++ ..+|.++
T Consensus 5 ~v~~i~~~~~~~~~i~~~~~vvV~f~a~-~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~~~l~~~~~v---~~vPt~l 80 (113)
T cd02989 5 KYREVSDEKEFFEIVKSSERVVCHFYHP-EFFRCKIMDKHLEILAKKHLETKFIKVNAEKAPFLVEKLNI---KVLPTVI 80 (113)
T ss_pred CeEEeCCHHHHHHHHhCCCcEEEEEECC-CCccHHHHHHHHHHHHHHcCCCEEEEEEcccCHHHHHHCCC---ccCCEEE
Confidence 4455555 66666666667777777653 22334667789999999998899999999988888999999 5899999
Q ss_pred EEeCCcceeeccCCCCC--CCCCCHHHHHHHH
Q 020623 209 VWDGNENYLTVIGSESI--DEEDQGSQISRFL 238 (323)
Q Consensus 209 I~~~~~kY~~~~~~~~~--~~~~t~~~I~~Fi 238 (323)
+....+.-....|..++ .+.++.++|..|+
T Consensus 81 ~fk~G~~v~~~~g~~~~~~~~~~~~~~~e~~~ 112 (113)
T cd02989 81 LFKNGKTVDRIVGFEELGGKDDFSTETLEKRL 112 (113)
T ss_pred EEECCEEEEEEECccccCCCCCCCHHHHHHHh
Confidence 88754311111122221 2468889999886
|
The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit. |
| >cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00078 Score=52.53 Aligned_cols=98 Identities=15% Similarity=0.209 Sum_probs=69.5
Q ss_pred eeecChhhHHHhhcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhC----C--C-eEEEEEcCcchhhHhhhcCCcCCCC
Q 020623 131 SVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASAN----R--E-LVFCYVGIKQFADFADTFEANKKSK 203 (323)
Q Consensus 131 v~~~t~~~~~~~~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~----~--~-l~F~~vd~~~~~~~~~~~gl~~~~~ 203 (323)
+.+++.+++...+..++++++.|... --..-..+...++++|+.+ + + +.|+.+|++....+++.||+ ..
T Consensus 3 v~~l~~~~f~~~i~~~~~vlv~F~a~-wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v---~~ 78 (108)
T cd02996 3 IVSLTSGNIDDILQSAELVLVNFYAD-WCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRI---NK 78 (108)
T ss_pred eEEcCHhhHHHHHhcCCEEEEEEECC-CCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCC---Cc
Confidence 67889999999887777777767653 1233456667788887753 2 3 89999999988888999999 58
Q ss_pred CCeEEEEeCCc-ceeeccCCCCCCCCCCHHHHHHHH
Q 020623 204 LPKMVVWDGNE-NYLTVIGSESIDEEDQGSQISRFL 238 (323)
Q Consensus 204 ~P~ivI~~~~~-kY~~~~~~~~~~~~~t~~~I~~Fi 238 (323)
.|.+++..... ..... .+.-+.+.|.+||
T Consensus 79 ~Ptl~~~~~g~~~~~~~------~g~~~~~~l~~fi 108 (108)
T cd02996 79 YPTLKLFRNGMMMKREY------RGQRSVEALAEFV 108 (108)
T ss_pred CCEEEEEeCCcCcceec------CCCCCHHHHHhhC
Confidence 89999876533 11111 2345778888875
|
It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. |
| >cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00036 Score=55.35 Aligned_cols=93 Identities=13% Similarity=0.179 Sum_probs=68.2
Q ss_pred CCCceecCChHHHHHH---HHhcCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeecc-cchhhH-hhcCCC
Q 020623 26 APDVSILNSDAEVSDF---VENAGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAKD-FSEDTM-VLYDFD 92 (323)
Q Consensus 26 ~p~v~~i~s~~~l~~f---l~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~~-~~~~~~-~~~~~~ 92 (323)
.++|.+++ .+.+.+. ++.+. +++|-|... ...|.++|+++++.+.|+.++. .+.+++ .+|++.
T Consensus 8 ~~~v~~l~-~~~f~~~~~v~~~~~---~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~~~~~~I~ 83 (113)
T cd03006 8 RSPVLDFY-KGQLDYAEELRTDAE---VSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKCRKQKHFF 83 (113)
T ss_pred CCCeEEec-hhhhHHHHhcccCCC---EEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHHHHhcCCc
Confidence 35688885 5777765 34555 467777542 2478999999987777777643 245677 589998
Q ss_pred CCCeEEEecCCCCCCccccCCCCHHHHHHHH
Q 020623 93 KVPALVALQPSYNEHNIFYGPFDEEFLEEFI 123 (323)
Q Consensus 93 ~~p~ivv~k~~~~~~~~y~g~~~~~~L~~fI 123 (323)
+.|++++|+++ +....|.|..+.+.|..|+
T Consensus 84 ~~PTl~lf~~g-~~~~~y~G~~~~~~i~~~~ 113 (113)
T cd03006 84 YFPVIHLYYRS-RGPIEYKGPMRAPYMEKFV 113 (113)
T ss_pred ccCEEEEEECC-ccceEEeCCCCHHHHHhhC
Confidence 99999999864 3456788999999999984
|
ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44. |
| >cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00093 Score=51.37 Aligned_cols=92 Identities=14% Similarity=0.192 Sum_probs=68.0
Q ss_pred CCceecCChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeecc-cchhhHhhcCCCCCCeE
Q 020623 27 PDVSILNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAKD-FSEDTMVLYDFDKVPAL 97 (323)
Q Consensus 27 p~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~~-~~~~~~~~~~~~~~p~i 97 (323)
|.+..+ +.++++..+.+.. +++|-|... ...|.++|+++.+.+.|+.++. -.++++.++++...|++
T Consensus 1 ~~~~~l-~~~~f~~~v~~~~---~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~ 76 (101)
T cd03003 1 PEIVTL-DRGDFDAAVNSGE---IWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRMLCRSQGVNSYPSL 76 (101)
T ss_pred CCeEEc-CHhhHHHHhcCCC---eEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHHHHHcCCCccCEE
Confidence 346677 4678888886654 567777542 2578899999987777766642 25678889999999999
Q ss_pred EEecCCCCCCccccCCCCHHHHHHHH
Q 020623 98 VALQPSYNEHNIFYGPFDEEFLEEFI 123 (323)
Q Consensus 98 vv~k~~~~~~~~y~g~~~~~~L~~fI 123 (323)
++|+++ .....|.|..+.+.|.+|.
T Consensus 77 ~~~~~g-~~~~~~~G~~~~~~l~~f~ 101 (101)
T cd03003 77 YVFPSG-MNPEKYYGDRSKESLVKFA 101 (101)
T ss_pred EEEcCC-CCcccCCCCCCHHHHHhhC
Confidence 999864 3344678999999999883
|
This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. |
| >cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00099 Score=52.81 Aligned_cols=99 Identities=8% Similarity=0.071 Sum_probs=72.2
Q ss_pred CCeeecChhhHHHh---hcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC-eEEEEEcCcchhhHh-hhcCCcCCCC
Q 020623 129 PLSVPINQDTLNLL---KDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFA-DTFEANKKSK 203 (323)
Q Consensus 129 Plv~~~t~~~~~~~---~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~-l~F~~vd~~~~~~~~-~~~gl~~~~~ 203 (323)
+-|.+++.+|+..+ ...++++++.|... --..-+.+...+.++|+++++ +.|+-+|++.....+ +.+++ ..
T Consensus 9 ~~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~-WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~~~~~~I---~~ 84 (113)
T cd03006 9 SPVLDFYKGQLDYAEELRTDAEVSLVMYYAP-WDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKCRKQKHF---FY 84 (113)
T ss_pred CCeEEechhhhHHHHhcccCCCEEEEEEECC-CCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHHHHhcCC---cc
Confidence 46889999999876 34556666767653 223457788899999999998 999999999877777 58898 57
Q ss_pred CCeEEEEeCCc-ceeeccCCCCCCCCCCHHHHHHHH
Q 020623 204 LPKMVVWDGNE-NYLTVIGSESIDEEDQGSQISRFL 238 (323)
Q Consensus 204 ~P~ivI~~~~~-kY~~~~~~~~~~~~~t~~~I~~Fi 238 (323)
.|.+.++...+ ...+ .+..+.+.|..|+
T Consensus 85 ~PTl~lf~~g~~~~~y-------~G~~~~~~i~~~~ 113 (113)
T cd03006 85 FPVIHLYYRSRGPIEY-------KGPMRAPYMEKFV 113 (113)
T ss_pred cCEEEEEECCccceEE-------eCCCCHHHHHhhC
Confidence 99999886432 1112 2346778887763
|
ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44. |
| >cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00087 Score=50.46 Aligned_cols=96 Identities=10% Similarity=0.206 Sum_probs=70.1
Q ss_pred ecChhhHHHhhcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhC--CC-eEEEEEcCcchhhHhhhcCCcCCCCCCeEEE
Q 020623 133 PINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASAN--RE-LVFCYVGIKQFADFADTFEANKKSKLPKMVV 209 (323)
Q Consensus 133 ~~t~~~~~~~~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~--~~-l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI 209 (323)
+++..++......++++++.|... .-..-..+...++++|+.+ ++ +.|+.+|.+....+.+.||+ ...|.+++
T Consensus 2 ~l~~~~~~~~i~~~~~~~v~f~~~-~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i---~~~Pt~~~ 77 (101)
T cd02961 2 ELTDDNFDELVKDSKDVLVEFYAP-WCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGV---RGYPTIKL 77 (101)
T ss_pred cccHHHHHHHHhCCCcEEEEEECC-CCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCC---CCCCEEEE
Confidence 467778888777777777777763 2234567778899999888 45 99999999877788899999 57899999
Q ss_pred EeCCc-ceeeccCCCCCCCCCCHHHHHHHH
Q 020623 210 WDGNE-NYLTVIGSESIDEEDQGSQISRFL 238 (323)
Q Consensus 210 ~~~~~-kY~~~~~~~~~~~~~t~~~I~~Fi 238 (323)
++.++ ..... .+..+.+.|.+|+
T Consensus 78 ~~~~~~~~~~~------~g~~~~~~i~~~~ 101 (101)
T cd02961 78 FPNGSKEPVKY------EGPRTLESLVEFI 101 (101)
T ss_pred EcCCCcccccC------CCCcCHHHHHhhC
Confidence 98763 22221 2345778887774
|
Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies |
| >cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00089 Score=52.82 Aligned_cols=106 Identities=15% Similarity=0.231 Sum_probs=72.6
Q ss_pred CCCeeecChhhHHHhhcCC---CcEEEEEEeCCChhHHHHHHHHHHHHHHhCCCeEEEEEcCcchhhHhhhcCCcCCCCC
Q 020623 128 LPLSVPINQDTLNLLKDDK---RKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKL 204 (323)
Q Consensus 128 ~Plv~~~t~~~~~~~~~~~---~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~l~F~~vd~~~~~~~~~~~gl~~~~~~ 204 (323)
...+.+++.+++....... .++++.|.... -..-..+...|+++|++++++.|+.+|.+.. .+++.|++ ..+
T Consensus 3 ~g~v~~i~~~~f~~~i~~~~~~~~vvv~F~a~~-c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~-~l~~~~~i---~~~ 77 (113)
T cd02957 3 FGEVREISSKEFLEEVTKASKGTRVVVHFYEPG-FPRCKILDSHLEELAAKYPETKFVKINAEKA-FLVNYLDI---KVL 77 (113)
T ss_pred CceEEEEcHHHHHHHHHccCCCCEEEEEEeCCC-CCcHHHHHHHHHHHHHHCCCcEEEEEEchhh-HHHHhcCC---CcC
Confidence 3456778888887654332 67777777632 2334677789999999998899999999876 78888999 589
Q ss_pred CeEEEEeCCcceeeccCCCCC-CCCCCHHHHHHHH
Q 020623 205 PKMVVWDGNENYLTVIGSESI-DEEDQGSQISRFL 238 (323)
Q Consensus 205 P~ivI~~~~~kY~~~~~~~~~-~~~~t~~~I~~Fi 238 (323)
|.++++...+......|..++ ...++.+.|.+|+
T Consensus 78 Pt~~~f~~G~~v~~~~G~~~~~~~~~~~~~l~~~l 112 (113)
T cd02957 78 PTLLVYKNGELIDNIVGFEELGGDDFTTEDLEKFL 112 (113)
T ss_pred CEEEEEECCEEEEEEecHHHhCCCCCCHHHHHHHh
Confidence 999988764322111232221 2457778887765
|
Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te |
| >cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00095 Score=52.02 Aligned_cols=92 Identities=22% Similarity=0.355 Sum_probs=66.0
Q ss_pred CceecCChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcC------ceeEEeec-ccchhhHhhcCCC
Q 020623 28 DVSILNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKK------KAWFAVAK-DFSEDTMVLYDFD 92 (323)
Q Consensus 28 ~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~------~~~F~~~~-~~~~~~~~~~~~~ 92 (323)
.|.++ +.+.+++.++.++ +++|-|... ...|.++|..++. .+.|+..+ +...+++.++++.
T Consensus 2 ~v~~l-~~~~f~~~i~~~~---~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~ 77 (108)
T cd02996 2 EIVSL-TSGNIDDILQSAE---LVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRIN 77 (108)
T ss_pred ceEEc-CHhhHHHHHhcCC---EEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCC
Confidence 35677 4688998887766 467776542 2467788877632 35666553 2356888999999
Q ss_pred CCCeEEEecCCCCCCccccCCCCHHHHHHHH
Q 020623 93 KVPALVALQPSYNEHNIFYGPFDEEFLEEFI 123 (323)
Q Consensus 93 ~~p~ivv~k~~~~~~~~y~g~~~~~~L~~fI 123 (323)
+.|++++|+++......|.|+.+.++|.+||
T Consensus 78 ~~Ptl~~~~~g~~~~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 78 KYPTLKLFRNGMMMKREYRGQRSVEALAEFV 108 (108)
T ss_pred cCCEEEEEeCCcCcceecCCCCCHHHHHhhC
Confidence 9999999987432345688998999999996
|
It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. |
| >cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1 | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00092 Score=51.20 Aligned_cols=93 Identities=17% Similarity=0.210 Sum_probs=65.2
Q ss_pred CceecCChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcC--ceeEEeecccchhhHhhcCCCCCCeE
Q 020623 28 DVSILNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKK--KAWFAVAKDFSEDTMVLYDFDKVPAL 97 (323)
Q Consensus 28 ~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~--~~~F~~~~~~~~~~~~~~~~~~~p~i 97 (323)
||..|+ .+.+++.+.+.+. +++|-|... ...+.++|..+.+ .+.|+..+....+++..+++.+.|++
T Consensus 1 ~v~~l~-~~~f~~~i~~~~~--~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~Pt~ 77 (104)
T cd02995 1 PVKVVV-GKNFDEVVLDSDK--DVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATANDVPSEFVVDGFPTI 77 (104)
T ss_pred CeEEEc-hhhhHHHHhCCCC--cEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcchhhhhhccCCCCCEE
Confidence 467774 5788887776543 466666432 2477888988865 46676665434456667777789999
Q ss_pred EEecCCC-CCCccccCCCCHHHHHHHH
Q 020623 98 VALQPSY-NEHNIFYGPFDEEFLEEFI 123 (323)
Q Consensus 98 vv~k~~~-~~~~~y~g~~~~~~L~~fI 123 (323)
++|+++. .....|.|..+.+.|.+||
T Consensus 78 ~~~~~~~~~~~~~~~g~~~~~~l~~fi 104 (104)
T cd02995 78 LFFPAGDKSNPIKYEGDRTLEDLIKFI 104 (104)
T ss_pred EEEcCCCcCCceEccCCcCHHHHHhhC
Confidence 9998753 2345688999999999996
|
PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu |
| >cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00089 Score=53.65 Aligned_cols=93 Identities=16% Similarity=0.187 Sum_probs=69.4
Q ss_pred CceecCChHHHHHHHHhcCCcccEEEEecCC------------hhHHHHHHHhh--cCceeEEeecc-cchhhHhhcCCC
Q 020623 28 DVSILNSDAEVSDFVENAGTFFPLFIGFGLD------------ESVMSNLALKY--KKKAWFAVAKD-FSEDTMVLYDFD 92 (323)
Q Consensus 28 ~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~------------~~~f~~~A~~~--~~~~~F~~~~~-~~~~~~~~~~~~ 92 (323)
.|..|+ .+++++.+.+++. ++++.|... .+.+.++|.++ .+.+.|+.++. -+.+++.+|++.
T Consensus 10 ~v~~lt-~~nF~~~v~~~~~--~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~~I~ 86 (120)
T cd03065 10 RVIDLN-EKNYKQVLKKYDV--LCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKLGLD 86 (120)
T ss_pred ceeeCC-hhhHHHHHHhCCc--eEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHcCCc
Confidence 467774 6999998988885 567777431 12345677776 55677776643 367899999999
Q ss_pred CCCeEEEecCCCCCCccccCCCCHHHHHHHHHh
Q 020623 93 KVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQ 125 (323)
Q Consensus 93 ~~p~ivv~k~~~~~~~~y~g~~~~~~L~~fI~~ 125 (323)
+.|++++|+++ +...|.|..+.+.|.+||.+
T Consensus 87 ~iPTl~lfk~G--~~v~~~G~~~~~~l~~~l~~ 117 (120)
T cd03065 87 EEDSIYVFKDD--EVIEYDGEFAADTLVEFLLD 117 (120)
T ss_pred cccEEEEEECC--EEEEeeCCCCHHHHHHHHHH
Confidence 99999999974 33348899999999999975
|
It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2 |
| >cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0018 Score=50.25 Aligned_cols=102 Identities=10% Similarity=0.154 Sum_probs=72.2
Q ss_pred eeecChhhHHHhh-cCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC-eEEEEEcCcc--hhhHhhhcCCcCCCCCCe
Q 020623 131 SVPINQDTLNLLK-DDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQ--FADFADTFEANKKSKLPK 206 (323)
Q Consensus 131 v~~~t~~~~~~~~-~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~-l~F~~vd~~~--~~~~~~~~gl~~~~~~P~ 206 (323)
+.+++.+++.... ..++++++.|... .=..-+++...+.++|+.+++ +.|+.+|++. ...+++.|++ ...|.
T Consensus 2 v~~l~~~~~~~~i~~~~~~~lv~f~a~-wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i---~~~Pt 77 (109)
T cd03002 2 VYELTPKNFDKVVHNTNYTTLVEFYAP-WCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGV---QGFPT 77 (109)
T ss_pred eEEcchhhHHHHHhcCCCeEEEEEECC-CCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCC---CcCCE
Confidence 5688999998865 4456777777653 223345677789999999987 8899999886 6678888999 57899
Q ss_pred EEEEeCCcc-eeeccCCCCCCCCCCHHHHHHHH
Q 020623 207 MVVWDGNEN-YLTVIGSESIDEEDQGSQISRFL 238 (323)
Q Consensus 207 ivI~~~~~k-Y~~~~~~~~~~~~~t~~~I~~Fi 238 (323)
+++++..++ ..... ....+..+.++|.+||
T Consensus 78 ~~~~~~~~~~~~~~~--~~~~G~~~~~~l~~fi 108 (109)
T cd03002 78 LKVFRPPKKASKHAV--EDYNGERSAKAIVDFV 108 (109)
T ss_pred EEEEeCCCccccccc--ccccCccCHHHHHHHh
Confidence 999987541 00000 0113457888999987
|
MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity. |
| >cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0012 Score=52.94 Aligned_cols=103 Identities=16% Similarity=0.131 Sum_probs=70.6
Q ss_pred CeeecChhhHHHhh-cCCCcEEEEEEeCCC-hhHHH--HHHHHHHHHHHhC--CC-eEEEEEcCcchhhHhhhcCCcCCC
Q 020623 130 LSVPINQDTLNLLK-DDKRKIVLAIVEDET-EEKSQ--KLVTTLKAAASAN--RE-LVFCYVGIKQFADFADTFEANKKS 202 (323)
Q Consensus 130 lv~~~t~~~~~~~~-~~~~~~v~~f~~~~~-~e~~~--~~~~~l~~~A~~~--~~-l~F~~vd~~~~~~~~~~~gl~~~~ 202 (323)
-+..+|.+||.... .++.++++.|...-- ++.-+ .+...+.++|.++ .+ +.|+.+|+++.+.+++.||+ .
T Consensus 10 ~v~~lt~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~~I---~ 86 (120)
T cd03065 10 RVIDLNEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKLGL---D 86 (120)
T ss_pred ceeeCChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHcCC---c
Confidence 46677888888654 444566555543210 11122 3335667778876 55 99999999999999999999 5
Q ss_pred CCCeEEEEeCCcceeeccCCCCCCCCCCHHHHHHHHHHHH
Q 020623 203 KLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEGYR 242 (323)
Q Consensus 203 ~~P~ivI~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~~~~ 242 (323)
.+|.++++...+.-. . .+..+.+.|.+||++..
T Consensus 87 ~iPTl~lfk~G~~v~-~------~G~~~~~~l~~~l~~~~ 119 (120)
T cd03065 87 EEDSIYVFKDDEVIE-Y------DGEFAADTLVEFLLDLI 119 (120)
T ss_pred cccEEEEEECCEEEE-e------eCCCCHHHHHHHHHHHh
Confidence 899999987543222 2 23468899999999875
|
It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2 |
| >cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5 | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0016 Score=49.84 Aligned_cols=98 Identities=12% Similarity=0.251 Sum_probs=70.5
Q ss_pred eeecChhhHHHhhcC-CCcEEEEEEeCCChhHHHHHHHHHHHHHHhCC--C-eEEEEEcCcc-hhhHhhhcCCcCCCCCC
Q 020623 131 SVPINQDTLNLLKDD-KRKIVLAIVEDETEEKSQKLVTTLKAAASANR--E-LVFCYVGIKQ-FADFADTFEANKKSKLP 205 (323)
Q Consensus 131 v~~~t~~~~~~~~~~-~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~--~-l~F~~vd~~~-~~~~~~~~gl~~~~~~P 205 (323)
+.+++.+++...... ++++++.|... .-..-.++...+.++++.++ + +.|+.+|... .+.+++.|++ ...|
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~v~f~a~-~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i---~~~P 77 (105)
T cd02998 2 VVELTDSNFDKVVGDDKKDVLVEFYAP-WCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGV---SGFP 77 (105)
T ss_pred eEEcchhcHHHHhcCCCCcEEEEEECC-CCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCC---CCcC
Confidence 457788888877654 45777777653 22334566788899998876 3 9999999988 7888999999 5789
Q ss_pred eEEEEeCCc-ceeeccCCCCCCCCCCHHHHHHHH
Q 020623 206 KMVVWDGNE-NYLTVIGSESIDEEDQGSQISRFL 238 (323)
Q Consensus 206 ~ivI~~~~~-kY~~~~~~~~~~~~~t~~~I~~Fi 238 (323)
.+++.+..+ +.... .+..+.++|.+|+
T Consensus 78 ~~~~~~~~~~~~~~~------~g~~~~~~l~~~i 105 (105)
T cd02998 78 TLKFFPKGSTEPVKY------EGGRDLEDLVKFV 105 (105)
T ss_pred EEEEEeCCCCCcccc------CCccCHHHHHhhC
Confidence 999988653 21111 3457888998885
|
The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER |
| >PTZ00443 Thioredoxin domain-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0021 Score=57.22 Aligned_cols=106 Identities=12% Similarity=0.174 Sum_probs=79.1
Q ss_pred CCeeecChhhHHHhhcC-----CCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC-eEEEEEcCcchhhHhhhcCCcCCC
Q 020623 129 PLSVPINQDTLNLLKDD-----KRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKS 202 (323)
Q Consensus 129 Plv~~~t~~~~~~~~~~-----~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~-l~F~~vd~~~~~~~~~~~gl~~~~ 202 (323)
..+.++|..|+..+... ++++++.|... .-..-+.+...+.++|+++++ +.|+.+|.+..+.+++.|++ .
T Consensus 30 ~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyAp-WC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~l~~~~~I---~ 105 (224)
T PTZ00443 30 NALVLLNDKNFEKLTQASTGATTGPWFVKFYAP-WCSHCRKMAPAWERLAKALKGQVNVADLDATRALNLAKRFAI---K 105 (224)
T ss_pred CCcEECCHHHHHHHHhhhcccCCCCEEEEEECC-CChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHHHHHHcCC---C
Confidence 35788899999886532 35777777653 223346677889999999998 99999999988888999999 5
Q ss_pred CCCeEEEEeCCcceeeccCCCCCCCCCCHHHHHHHHHHHHcC
Q 020623 203 KLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEGYREG 244 (323)
Q Consensus 203 ~~P~ivI~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~~~~~G 244 (323)
..|.+++++....+.+. .+..+.++|.+|+..-...
T Consensus 106 ~~PTl~~f~~G~~v~~~------~G~~s~e~L~~fi~~~~~~ 141 (224)
T PTZ00443 106 GYPTLLLFDKGKMYQYE------GGDRSTEKLAAFALGDFKK 141 (224)
T ss_pred cCCEEEEEECCEEEEee------CCCCCHHHHHHHHHHHHHh
Confidence 89999998854333332 2457889999999887643
|
|
| >KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.002 Score=53.15 Aligned_cols=106 Identities=11% Similarity=0.169 Sum_probs=79.1
Q ss_pred CCCeeecChhhHHH-hhcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC-eEEEEEcCcchhhHhhhcCCcCCCCCC
Q 020623 128 LPLSVPINQDTLNL-LKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLP 205 (323)
Q Consensus 128 ~Plv~~~t~~~~~~-~~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~-l~F~~vd~~~~~~~~~~~gl~~~~~~P 205 (323)
.+.+...+.+.+.. +.++++|+++-|... -=..=+.+...|.+++.++.| +.|+.+|.+++.++++.|+| ..+|
T Consensus 42 ~~~~~~~s~~~~~~~Vi~S~~PVlVdF~A~-WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y~I---~avP 117 (150)
T KOG0910|consen 42 ATLFNVQSDSEFDDKVINSDVPVLVDFHAE-WCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAEDYEI---SAVP 117 (150)
T ss_pred cccccccCHHHHHHHHHccCCCEEEEEecC-cCccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHhhcce---eeee
Confidence 34666666666654 567889998877652 001235677899999999998 99999999999999999999 6899
Q ss_pred eEEEEeCCcceeeccCCCCCCCCCCHHHHHHHHHHHHc
Q 020623 206 KMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEGYRE 243 (323)
Q Consensus 206 ~ivI~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~~~~~ 243 (323)
.++++...++--. +-+..+.+.|.+||++|+.
T Consensus 118 tvlvfknGe~~d~------~vG~~~~~~l~~~i~k~l~ 149 (150)
T KOG0910|consen 118 TVLVFKNGEKVDR------FVGAVPKEQLRSLIKKFLK 149 (150)
T ss_pred EEEEEECCEEeee------ecccCCHHHHHHHHHHHhc
Confidence 9999887543211 1245788999999999874
|
|
| >TIGR01068 thioredoxin thioredoxin | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0033 Score=47.56 Aligned_cols=97 Identities=6% Similarity=0.153 Sum_probs=66.7
Q ss_pred ChhhHHHhhcC-CCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC-eEEEEEcCcchhhHhhhcCCcCCCCCCeEEEEeC
Q 020623 135 NQDTLNLLKDD-KRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDG 212 (323)
Q Consensus 135 t~~~~~~~~~~-~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~-l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI~~~ 212 (323)
+.+++...... ++++++.|... .-..-..+...|+++++++++ +.|+.+|.+....+++.||+ ...|.++++..
T Consensus 2 ~~~~~~~~~~~~~~~vvi~f~~~-~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v---~~~P~~~~~~~ 77 (101)
T TIGR01068 2 TDANFDETIASSDKPVLVDFWAP-WCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGI---RSIPTLLLFKN 77 (101)
T ss_pred CHHHHHHHHhhcCCcEEEEEECC-CCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCC---CcCCEEEEEeC
Confidence 45566654433 45777777653 222345666788999988886 99999999877778889999 57999999865
Q ss_pred CcceeeccCCCCCCCCCCHHHHHHHHHHH
Q 020623 213 NENYLTVIGSESIDEEDQGSQISRFLEGY 241 (323)
Q Consensus 213 ~~kY~~~~~~~~~~~~~t~~~I~~Fi~~~ 241 (323)
.+..... .+..+.+.|.+|++..
T Consensus 78 g~~~~~~------~g~~~~~~l~~~l~~~ 100 (101)
T TIGR01068 78 GKEVDRS------VGALPKAALKQLINKN 100 (101)
T ss_pred CcEeeee------cCCCCHHHHHHHHHhh
Confidence 4322121 1235678899998763
|
Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model. |
| >TIGR01126 pdi_dom protein disulfide-isomerase domain | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0024 Score=48.62 Aligned_cols=89 Identities=16% Similarity=0.209 Sum_probs=64.3
Q ss_pred ChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcC--ceeEEeecc-cchhhHhhcCCCCCCeEEEecC
Q 020623 34 SDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKK--KAWFAVAKD-FSEDTMVLYDFDKVPALVALQP 102 (323)
Q Consensus 34 s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~--~~~F~~~~~-~~~~~~~~~~~~~~p~ivv~k~ 102 (323)
+.+.+++++..+. +++|-|... ...+.++|..+.. .+.|+..+. ...+++.++++...|++++|++
T Consensus 2 ~~~~~~~~~~~~~---~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~~ 78 (102)
T TIGR01126 2 TASNFDDIVLSNK---DVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKFFPK 78 (102)
T ss_pred chhhHHHHhccCC---cEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEEEecC
Confidence 3567788777544 467777542 2467788888876 466665532 3567788899999999999987
Q ss_pred CCCCCccccCCCCHHHHHHHHHhh
Q 020623 103 SYNEHNIFYGPFDEEFLEEFIKQN 126 (323)
Q Consensus 103 ~~~~~~~y~g~~~~~~L~~fI~~~ 126 (323)
+ +....|.|..+.+.|..||.++
T Consensus 79 ~-~~~~~~~g~~~~~~l~~~i~~~ 101 (102)
T TIGR01126 79 G-KKPVDYEGGRDLEAIVEFVNEK 101 (102)
T ss_pred C-CcceeecCCCCHHHHHHHHHhc
Confidence 4 3355688999999999999875
|
This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK. |
| >cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0028 Score=49.97 Aligned_cols=81 Identities=15% Similarity=0.147 Sum_probs=63.5
Q ss_pred eeecChhhHHHhhcCCCcEEEEEEeCC-ChhHHHHHHHHHHHHHHhCCC-eEEEEEcCcchhhHhhhcCCcCCCCCCeEE
Q 020623 131 SVPINQDTLNLLKDDKRKIVLAIVEDE-TEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMV 208 (323)
Q Consensus 131 v~~~t~~~~~~~~~~~~~~v~~f~~~~-~~e~~~~~~~~l~~~A~~~~~-l~F~~vd~~~~~~~~~~~gl~~~~~~P~iv 208 (323)
..++|..|+......+.+.++.|...- .-..-..+...|.++|++|.+ +.|+.+|.++.+.++..|++ ...|.++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~la~~f~V---~sIPTli 88 (111)
T cd02965 12 WPRVDAATLDDWLAAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQALAARFGV---LRTPALL 88 (111)
T ss_pred CcccccccHHHHHhCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHHHHHHcCC---CcCCEEE
Confidence 456777888887777778877776521 112345677899999999998 99999999998889999999 5799999
Q ss_pred EEeCCc
Q 020623 209 VWDGNE 214 (323)
Q Consensus 209 I~~~~~ 214 (323)
++...+
T Consensus 89 ~fkdGk 94 (111)
T cd02965 89 FFRDGR 94 (111)
T ss_pred EEECCE
Confidence 887543
|
They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway. |
| >cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related) | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0035 Score=47.93 Aligned_cols=97 Identities=10% Similarity=0.219 Sum_probs=68.7
Q ss_pred eeecChhhHHHhhcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCC--C-eEEEEEcCcc--hhhHhhhcCCcCCCCCC
Q 020623 131 SVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANR--E-LVFCYVGIKQ--FADFADTFEANKKSKLP 205 (323)
Q Consensus 131 v~~~t~~~~~~~~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~--~-l~F~~vd~~~--~~~~~~~~gl~~~~~~P 205 (323)
+.+++..++......++++++.|...- -..-.++...+.++++.++ + +.|+.+|... ...++..+|+ ...|
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~v~f~a~w-C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i---~~~P 77 (104)
T cd02997 2 VVHLTDEDFRKFLKKEKHVLVMFYAPW-CGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNV---KGFP 77 (104)
T ss_pred eEEechHhHHHHHhhCCCEEEEEECCC-CHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCC---cccc
Confidence 567788888887777778877777631 2334566677888888776 4 8898899986 7778888999 5789
Q ss_pred eEEEEeCCc-ceeeccCCCCCCCCCCHHHHHHHH
Q 020623 206 KMVVWDGNE-NYLTVIGSESIDEEDQGSQISRFL 238 (323)
Q Consensus 206 ~ivI~~~~~-kY~~~~~~~~~~~~~t~~~I~~Fi 238 (323)
.+++....+ .+.+ .+..+.+++.+|+
T Consensus 78 t~~~~~~g~~~~~~-------~g~~~~~~l~~~l 104 (104)
T cd02997 78 TFKYFENGKFVEKY-------EGERTAEDIIEFM 104 (104)
T ss_pred EEEEEeCCCeeEEe-------CCCCCHHHHHhhC
Confidence 998877543 2222 2346778887774
|
PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. |
| >PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0022 Score=50.88 Aligned_cols=96 Identities=18% Similarity=0.241 Sum_probs=65.8
Q ss_pred CceecCChHHHHHHHHhcCCcccEEEEec------CChhHHHHHH-Hhh--cCceeEEee--cc----cchhhHhhcCCC
Q 020623 28 DVSILNSDAEVSDFVENAGTFFPLFIGFG------LDESVMSNLA-LKY--KKKAWFAVA--KD----FSEDTMVLYDFD 92 (323)
Q Consensus 28 ~v~~i~s~~~l~~fl~~~~~~~~~vVgf~------~~~~~f~~~A-~~~--~~~~~F~~~--~~----~~~~~~~~~~~~ 92 (323)
.+..|+ .-.+++++..... ++|=|. +..+.|.++| +.. .++..++.+ ++ .+.+++.+|+++
T Consensus 5 G~v~LD-~~tFdKvi~kf~~---~LVKFD~ayPyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~ 80 (126)
T PF07912_consen 5 GCVPLD-ELTFDKVIPKFKY---VLVKFDVAYPYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKID 80 (126)
T ss_dssp TSEEES-TTHHHHHGGGSSE---EEEEEEESS--CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-S
T ss_pred ceeecc-ceehhheeccCce---EEEEEeccCCCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCC
Confidence 455674 4678888988773 667662 2357899999 333 345666655 33 267889999986
Q ss_pred C--CCeEEEecCCCCCCccc--cCCCCHHHHHHHHHhhc
Q 020623 93 K--VPALVALQPSYNEHNIF--YGPFDEEFLEEFIKQNF 127 (323)
Q Consensus 93 ~--~p~ivv~k~~~~~~~~y--~g~~~~~~L~~fI~~~~ 127 (323)
+ .|.+.+|+...++...| +|+++.++|.+|++.|+
T Consensus 81 ke~fPv~~LF~~~~~~pv~~p~~~~~t~~~l~~fvk~~t 119 (126)
T PF07912_consen 81 KEDFPVIYLFVGDKEEPVRYPFDGDVTADNLQRFVKSNT 119 (126)
T ss_dssp CCC-SEEEEEESSTTSEEEE-TCS-S-HHHHHHHHHHTS
T ss_pred cccCCEEEEecCCCCCCccCCccCCccHHHHHHHHHhCC
Confidence 4 69999999655666667 78999999999999985
|
The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B. |
| >cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0068 Score=46.37 Aligned_cols=96 Identities=13% Similarity=0.180 Sum_probs=68.3
Q ss_pred eeecChhhHHHhhcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC--eEEEEEcCcchhhHhhhcCCcCCCCCCeEE
Q 020623 131 SVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE--LVFCYVGIKQFADFADTFEANKKSKLPKMV 208 (323)
Q Consensus 131 v~~~t~~~~~~~~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~--l~F~~vd~~~~~~~~~~~gl~~~~~~P~iv 208 (323)
|.+++.+++..+... . .++.|... --..-+.+...+.++|+.+++ +.|+.+|.+..+.+++.+++ ..+|.++
T Consensus 3 v~~l~~~~f~~~~~~-~-~lv~f~a~-wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i---~~~Pt~~ 76 (101)
T cd02994 3 VVELTDSNWTLVLEG-E-WMIEFYAP-WCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFV---TALPTIY 76 (101)
T ss_pred eEEcChhhHHHHhCC-C-EEEEEECC-CCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCC---cccCEEE
Confidence 678899999987753 3 44545542 123345677788888888764 99999999887788888998 6899998
Q ss_pred EEeCCcceeeccCCCCCCCCCCHHHHHHHHH
Q 020623 209 VWDGNENYLTVIGSESIDEEDQGSQISRFLE 239 (323)
Q Consensus 209 I~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~ 239 (323)
+.. +++.... .+..+.++|.+|++
T Consensus 77 ~~~-~g~~~~~------~G~~~~~~l~~~i~ 100 (101)
T cd02994 77 HAK-DGVFRRY------QGPRDKEDLISFIE 100 (101)
T ss_pred EeC-CCCEEEe------cCCCCHHHHHHHHh
Confidence 864 4433222 23568899999986
|
TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC. |
| >cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0038 Score=47.62 Aligned_cols=96 Identities=10% Similarity=0.187 Sum_probs=67.4
Q ss_pred eeecChhhHHHhhcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC----eEEEEEcCcchhhHhhhcCCcCCCCCCe
Q 020623 131 SVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE----LVFCYVGIKQFADFADTFEANKKSKLPK 206 (323)
Q Consensus 131 v~~~t~~~~~~~~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~----l~F~~vd~~~~~~~~~~~gl~~~~~~P~ 206 (323)
+.+++.+++......+ ++++.|... .-..-+.+...+.++|+++++ +.|+.+|.+....+++.|++ ..+|.
T Consensus 2 ~~~l~~~~f~~~~~~~-~~lv~f~a~-wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v---~~~Pt 76 (102)
T cd03005 2 VLELTEDNFDHHIAEG-NHFVKFFAP-WCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQV---RGYPT 76 (102)
T ss_pred eeECCHHHHHHHhhcC-CEEEEEECC-CCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCC---CcCCE
Confidence 5678889998877554 566666553 122345666788888888753 89999999877788889998 57999
Q ss_pred EEEEeCCc-ceeeccCCCCCCCCCCHHHHHHHH
Q 020623 207 MVVWDGNE-NYLTVIGSESIDEEDQGSQISRFL 238 (323)
Q Consensus 207 ivI~~~~~-kY~~~~~~~~~~~~~t~~~I~~Fi 238 (323)
++++...+ ...+ .+..+.+.|.+||
T Consensus 77 ~~~~~~g~~~~~~-------~G~~~~~~l~~~i 102 (102)
T cd03005 77 LLLFKDGEKVDKY-------KGTRDLDSLKEFV 102 (102)
T ss_pred EEEEeCCCeeeEe-------eCCCCHHHHHhhC
Confidence 99886443 2222 2346778888875
|
Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia. |
| >cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0043 Score=46.57 Aligned_cols=87 Identities=21% Similarity=0.258 Sum_probs=63.5
Q ss_pred ChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhh--cCceeEEeecc-cchhhHhhcCCCCCCeEEEecC
Q 020623 34 SDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKY--KKKAWFAVAKD-FSEDTMVLYDFDKVPALVALQP 102 (323)
Q Consensus 34 s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~--~~~~~F~~~~~-~~~~~~~~~~~~~~p~ivv~k~ 102 (323)
+.+++.+.+++.. +++|-|... ...+.++|..+ .+.+.|+..+. ....++.++++...|++++|++
T Consensus 4 ~~~~~~~~i~~~~---~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~ 80 (101)
T cd02961 4 TDDNFDELVKDSK---DVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFPN 80 (101)
T ss_pred cHHHHHHHHhCCC---cEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEEEEEcC
Confidence 4578888888876 356666542 24677888888 46677776642 2467888999988999999987
Q ss_pred CCCCCccccCCCCHHHHHHHH
Q 020623 103 SYNEHNIFYGPFDEEFLEEFI 123 (323)
Q Consensus 103 ~~~~~~~y~g~~~~~~L~~fI 123 (323)
.......|.|..+.++|.+|+
T Consensus 81 ~~~~~~~~~g~~~~~~i~~~~ 101 (101)
T cd02961 81 GSKEPVKYEGPRTLESLVEFI 101 (101)
T ss_pred CCcccccCCCCcCHHHHHhhC
Confidence 433455678888899999885
|
Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies |
| >cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.006 Score=46.18 Aligned_cols=84 Identities=15% Similarity=0.257 Sum_probs=61.0
Q ss_pred CCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC-eEEEEEcCcchhhHhhhcCCcCCCCCCeEEEEeCCcceeeccCCCC
Q 020623 146 KRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYLTVIGSES 224 (323)
Q Consensus 146 ~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~-l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI~~~~~kY~~~~~~~~ 224 (323)
++++++.|... .-..-+.+...+.++++.+++ +.|+.+|.+..+.+++.|++ ..+|.+++++..+.....
T Consensus 12 ~~~vlv~f~a~-wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~i---~~~Pt~~~~~~g~~~~~~----- 82 (96)
T cd02956 12 QVPVVVDFWAP-RSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGV---QALPTVYLFAAGQPVDGF----- 82 (96)
T ss_pred CCeEEEEEECC-CChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHHHHHcCC---CCCCEEEEEeCCEEeeee-----
Confidence 56777777653 222345677889999999987 99999999988888899999 579999998743222111
Q ss_pred CCCCCCHHHHHHHHH
Q 020623 225 IDEEDQGSQISRFLE 239 (323)
Q Consensus 225 ~~~~~t~~~I~~Fi~ 239 (323)
.+..+.+.|.+|++
T Consensus 83 -~g~~~~~~l~~~l~ 96 (96)
T cd02956 83 -QGAQPEEQLRQMLD 96 (96)
T ss_pred -cCCCCHHHHHHHhC
Confidence 23467888888874
|
Its gene has been sequenced from several gammaproteobacteria and actinobacteria. |
| >cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0058 Score=47.74 Aligned_cols=98 Identities=10% Similarity=0.161 Sum_probs=68.6
Q ss_pred eeecChhhHHHhhc---CCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC--eEEEEEcCcc-hhhHhh-hcCCcCCCC
Q 020623 131 SVPINQDTLNLLKD---DKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE--LVFCYVGIKQ-FADFAD-TFEANKKSK 203 (323)
Q Consensus 131 v~~~t~~~~~~~~~---~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~--l~F~~vd~~~-~~~~~~-~~gl~~~~~ 203 (323)
|.+++.+++..+.. .++++++.|... .=..-+++...+.++|+.+++ +.|+.+|.+. ...++. .+++ ..
T Consensus 3 v~~~~~~~~~~~~~~~~~~k~vlv~f~a~-wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v---~~ 78 (109)
T cd02993 3 VVTLSRAEIEALAKGERRNQSTLVVLYAP-WCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQL---KS 78 (109)
T ss_pred ceeccHHHHHHHHhhhhcCCCEEEEEECC-CCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCC---Cc
Confidence 67889999988763 457887777653 223346677788999998875 8999999875 345554 5888 57
Q ss_pred CCeEEEEeCCc--ceeeccCCCCCCCCCCHHHHHHHH
Q 020623 204 LPKMVVWDGNE--NYLTVIGSESIDEEDQGSQISRFL 238 (323)
Q Consensus 204 ~P~ivI~~~~~--kY~~~~~~~~~~~~~t~~~I~~Fi 238 (323)
.|.+++.+.++ .+.+. | +.-+.++|..||
T Consensus 79 ~Pti~~f~~~~~~~~~y~-g-----~~~~~~~l~~f~ 109 (109)
T cd02993 79 FPTILFFPKNSRQPIKYP-S-----EQRDVDSLLMFV 109 (109)
T ss_pred CCEEEEEcCCCCCceecc-C-----CCCCHHHHHhhC
Confidence 99999887653 23332 1 125778888875
|
APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red |
| >cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0083 Score=49.45 Aligned_cols=103 Identities=10% Similarity=0.143 Sum_probs=72.4
Q ss_pred hHHHhhcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC-eEEEEEcCc--chhhHhhhcCCcCCCCCCeEEEEeCCc
Q 020623 138 TLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIK--QFADFADTFEANKKSKLPKMVVWDGNE 214 (323)
Q Consensus 138 ~~~~~~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~-l~F~~vd~~--~~~~~~~~~gl~~~~~~P~ivI~~~~~ 214 (323)
.+......++++++.|... .=..-..+...|.++++++++ +.|+.++.+ .+...+..|++ ...|.+++++.++
T Consensus 12 ~~~~a~~~gk~vvV~F~A~-WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V---~~iPt~v~~~~~G 87 (142)
T cd02950 12 PPEVALSNGKPTLVEFYAD-WCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRV---DGIPHFVFLDREG 87 (142)
T ss_pred CHHHHHhCCCEEEEEEECC-cCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCC---CCCCEEEEECCCC
Confidence 3444455678888777652 113345677889999999876 788887765 34567888999 5799999998765
Q ss_pred cee-eccCCCCCCCCCCHHHHHHHHHHHHcCcccccc
Q 020623 215 NYL-TVIGSESIDEEDQGSQISRFLEGYREGRTEQKK 250 (323)
Q Consensus 215 kY~-~~~~~~~~~~~~t~~~I~~Fi~~~~~Gkl~~~~ 250 (323)
+-. .. .+..+.+.|.++++.+++|.-.|..
T Consensus 88 ~~v~~~------~G~~~~~~l~~~l~~l~~~~~~~~~ 118 (142)
T cd02950 88 NEEGQS------IGLQPKQVLAQNLDALVAGEPLPYA 118 (142)
T ss_pred CEEEEE------eCCCCHHHHHHHHHHHHcCCCCCcc
Confidence 321 11 2346788999999999998865543
|
It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport. |
| >cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5 | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.004 Score=47.60 Aligned_cols=92 Identities=20% Similarity=0.219 Sum_probs=64.2
Q ss_pred ceecCChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhc--CceeEEeecc-c-chhhHhhcCCCCCCe
Q 020623 29 VSILNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYK--KKAWFAVAKD-F-SEDTMVLYDFDKVPA 96 (323)
Q Consensus 29 v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~--~~~~F~~~~~-~-~~~~~~~~~~~~~p~ 96 (323)
+..++ .++++..+.+.+. +++|-|... .+.|.+++.++. +.+.|+..+. . ..+++.++++.+.|+
T Consensus 2 ~~~l~-~~~~~~~~~~~~~--~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~ 78 (105)
T cd02998 2 VVELT-DSNFDKVVGDDKK--DVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPT 78 (105)
T ss_pred eEEcc-hhcHHHHhcCCCC--cEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCE
Confidence 35564 4778887766553 456666432 247788888876 3466655532 3 467888999989999
Q ss_pred EEEecCCCCCCccccCCCCHHHHHHHH
Q 020623 97 LVALQPSYNEHNIFYGPFDEEFLEEFI 123 (323)
Q Consensus 97 ivv~k~~~~~~~~y~g~~~~~~L~~fI 123 (323)
+++|+++......|.|..+.+.|.+||
T Consensus 79 ~~~~~~~~~~~~~~~g~~~~~~l~~~i 105 (105)
T cd02998 79 LKFFPKGSTEPVKYEGGRDLEDLVKFV 105 (105)
T ss_pred EEEEeCCCCCccccCCccCHHHHHhhC
Confidence 999987433455688999999999996
|
The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.005 Score=56.28 Aligned_cols=106 Identities=14% Similarity=0.192 Sum_probs=80.4
Q ss_pred CCeeecChhhHHHh-h-cCC-CcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC-eEEEEEcCcchhhHhhhcCCcCCCCC
Q 020623 129 PLSVPINQDTLNLL-K-DDK-RKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKL 204 (323)
Q Consensus 129 Plv~~~t~~~~~~~-~-~~~-~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~-l~F~~vd~~~~~~~~~~~gl~~~~~~ 204 (323)
|.+..+|..||..- . .+. .|+++.|... --....++...|.+++..|+| +.++.+|++..+.+...||+ ..+
T Consensus 23 ~~I~dvT~anfe~~V~~~S~~~PVlV~fWap-~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaqfgi---qsI 98 (304)
T COG3118 23 PGIKDVTEANFEQEVIQSSREVPVLVDFWAP-WCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQFGV---QSI 98 (304)
T ss_pred ccceechHhHHHHHHHHHccCCCeEEEecCC-CCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHHhCc---CcC
Confidence 34888999999863 2 333 5998888764 234568899999999999999 99999999998999999999 689
Q ss_pred CeEEEEeCCcceeeccCCCCCCCCCCHHHHHHHHHHHHcC
Q 020623 205 PKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEGYREG 244 (323)
Q Consensus 205 P~ivI~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~~~~~G 244 (323)
|.++.+.... +..|. .+....+.|.+|++.+..-
T Consensus 99 PtV~af~dGq---pVdgF---~G~qPesqlr~~ld~~~~~ 132 (304)
T COG3118 99 PTVYAFKDGQ---PVDGF---QGAQPESQLRQFLDKVLPA 132 (304)
T ss_pred CeEEEeeCCc---Ccccc---CCCCcHHHHHHHHHHhcCh
Confidence 9998765321 11121 2335678999999999765
|
|
| >KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0032 Score=51.90 Aligned_cols=94 Identities=22% Similarity=0.361 Sum_probs=72.6
Q ss_pred eecCChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeec-ccchhhHhhcCCCCCCeEEEe
Q 020623 30 SILNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAK-DFSEDTMVLYDFDKVPALVAL 100 (323)
Q Consensus 30 ~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~-~~~~~~~~~~~~~~~p~ivv~ 100 (323)
..+.|.+++++.+.+.+. |++|-|... .+...+++..|.+.+.|+.++ +...+++..|++...|++++|
T Consensus 45 ~~~~s~~~~~~~Vi~S~~--PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y~I~avPtvlvf 122 (150)
T KOG0910|consen 45 FNVQSDSEFDDKVINSDV--PVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAEDYEISAVPTVLVF 122 (150)
T ss_pred ccccCHHHHHHHHHccCC--CEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHhhcceeeeeEEEEE
Confidence 345578999887777776 899998642 356788999998888888773 356788999999999999999
Q ss_pred cCCCCCCccccCCCCHHHHHHHHHhh
Q 020623 101 QPSYNEHNIFYGPFDEEFLEEFIKQN 126 (323)
Q Consensus 101 k~~~~~~~~y~g~~~~~~L~~fI~~~ 126 (323)
+++ +....+-|-.+.+.|.+||.+.
T Consensus 123 knG-e~~d~~vG~~~~~~l~~~i~k~ 147 (150)
T KOG0910|consen 123 KNG-EKVDRFVGAVPKEQLRSLIKKF 147 (150)
T ss_pred ECC-EEeeeecccCCHHHHHHHHHHH
Confidence 984 3344566777888899998764
|
|
| >cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1 | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0082 Score=45.81 Aligned_cols=97 Identities=9% Similarity=0.215 Sum_probs=68.4
Q ss_pred eeecChhhHHHhh-cCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC---eEEEEEcCcchhhHhhhcCCcCCCCCCe
Q 020623 131 SVPINQDTLNLLK-DDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE---LVFCYVGIKQFADFADTFEANKKSKLPK 206 (323)
Q Consensus 131 v~~~t~~~~~~~~-~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~---l~F~~vd~~~~~~~~~~~gl~~~~~~P~ 206 (323)
|.+++..++.... ..++++++.|... .-..-+.+...+.++|+.+++ +.|+.+|.+.. .....+++ ...|.
T Consensus 2 v~~l~~~~f~~~i~~~~~~~~v~f~~~-~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~---~~~Pt 76 (104)
T cd02995 2 VKVVVGKNFDEVVLDSDKDVLVEFYAP-WCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-DVPSEFVV---DGFPT 76 (104)
T ss_pred eEEEchhhhHHHHhCCCCcEEEEEECC-CCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-hhhhhccC---CCCCE
Confidence 6688999998764 4456777767653 223456788899999998764 89999999764 45666777 57899
Q ss_pred EEEEeCCc--ceeeccCCCCCCCCCCHHHHHHHH
Q 020623 207 MVVWDGNE--NYLTVIGSESIDEEDQGSQISRFL 238 (323)
Q Consensus 207 ivI~~~~~--kY~~~~~~~~~~~~~t~~~I~~Fi 238 (323)
+++...++ +-... .+..+..+|.+||
T Consensus 77 ~~~~~~~~~~~~~~~------~g~~~~~~l~~fi 104 (104)
T cd02995 77 ILFFPAGDKSNPIKY------EGDRTLEDLIKFI 104 (104)
T ss_pred EEEEcCCCcCCceEc------cCCcCHHHHHhhC
Confidence 99887643 21111 3457888888885
|
PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu |
| >cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0071 Score=47.24 Aligned_cols=93 Identities=15% Similarity=0.125 Sum_probs=63.1
Q ss_pred CceecCChHHHHHHHHh--cCCcccEEEEecCC--------hhHHHHHHHhhcCc-eeEEeecc-c-chhhHh-hcCCCC
Q 020623 28 DVSILNSDAEVSDFVEN--AGTFFPLFIGFGLD--------ESVMSNLALKYKKK-AWFAVAKD-F-SEDTMV-LYDFDK 93 (323)
Q Consensus 28 ~v~~i~s~~~l~~fl~~--~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~-~~F~~~~~-~-~~~~~~-~~~~~~ 93 (323)
.|.++ |.++++.++.. .+. +++|-|... ...|.++|..+++. +.|+..+. . ...++. .+++..
T Consensus 2 ~v~~~-~~~~~~~~~~~~~~~k--~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~ 78 (109)
T cd02993 2 AVVTL-SRAEIEALAKGERRNQ--STLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKS 78 (109)
T ss_pred cceec-cHHHHHHHHhhhhcCC--CEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCc
Confidence 36677 45788887742 232 577777542 24788899888764 66665532 1 234554 588888
Q ss_pred CCeEEEecCCCCCCccccCC-CCHHHHHHHH
Q 020623 94 VPALVALQPSYNEHNIFYGP-FDEEFLEEFI 123 (323)
Q Consensus 94 ~p~ivv~k~~~~~~~~y~g~-~~~~~L~~fI 123 (323)
.|++++|++.......|.|+ .+.++|.+||
T Consensus 79 ~Pti~~f~~~~~~~~~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 79 FPTILFFPKNSRQPIKYPSEQRDVDSLLMFV 109 (109)
T ss_pred CCEEEEEcCCCCCceeccCCCCCHHHHHhhC
Confidence 99999998743345578885 7899999996
|
APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red |
| >cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0066 Score=47.72 Aligned_cols=86 Identities=13% Similarity=0.076 Sum_probs=62.1
Q ss_pred CCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC--eEEEEEcCcchhhHhhhcCCcCCCCCCeEEEEeCCcceeeccCC
Q 020623 145 DKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE--LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYLTVIGS 222 (323)
Q Consensus 145 ~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~--l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI~~~~~kY~~~~~~ 222 (323)
.++|+++.|... .-..-+.+...+.++++++++ +.|+.+|.+..+.+++.+|+ ...|.+++.+..+.....
T Consensus 23 ~~~~vlV~F~a~-wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V---~~~Pt~~i~~~g~~~~~~--- 95 (111)
T cd02963 23 FKKPYLIKITSD-WCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGA---HSVPAIVGIINGQVTFYH--- 95 (111)
T ss_pred CCCeEEEEEECC-ccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCC---ccCCEEEEEECCEEEEEe---
Confidence 457787777753 123345666788899998874 89999999877788889999 589999988744322222
Q ss_pred CCCCCCCCHHHHHHHHHH
Q 020623 223 ESIDEEDQGSQISRFLEG 240 (323)
Q Consensus 223 ~~~~~~~t~~~I~~Fi~~ 240 (323)
.+..+.+.|.+||++
T Consensus 96 ---~G~~~~~~l~~~i~~ 110 (111)
T cd02963 96 ---DSSFTKQHVVDFVRK 110 (111)
T ss_pred ---cCCCCHHHHHHHHhc
Confidence 245678899999875
|
DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network. |
| >cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.01 Score=50.75 Aligned_cols=110 Identities=18% Similarity=0.287 Sum_probs=74.3
Q ss_pred cCCCeeecCh-hhHHHhhcC-C--CcEEEEEEeCCChhHHHHHHHHHHHHHHhCCCeEEEEEcCcchhhHhhhcCCcCCC
Q 020623 127 FLPLSVPINQ-DTLNLLKDD-K--RKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKS 202 (323)
Q Consensus 127 ~~Plv~~~t~-~~~~~~~~~-~--~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~l~F~~vd~~~~~~~~~~~gl~~~~ 202 (323)
.+.-+.+++. ++|...... + .++++.|+.. .-..-+.+...|.++|++|+++.|+.+|++.. .++..|++ .
T Consensus 60 ~~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~-wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~-~l~~~f~v---~ 134 (175)
T cd02987 60 RFGKVYELDSGEQFLDAIDKEGKDTTVVVHIYEP-GIPGCAALNSSLLCLAAEYPAVKFCKIRASAT-GASDEFDT---D 134 (175)
T ss_pred CCCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECC-CCchHHHHHHHHHHHHHHCCCeEEEEEeccch-hhHHhCCC---C
Confidence 3566778887 777765432 2 3666666653 22334566689999999998899999999865 67788888 5
Q ss_pred CCCeEEEEeCCcceeeccCCCC-CCCCCCHHHHHHHHHHH
Q 020623 203 KLPKMVVWDGNENYLTVIGSES-IDEEDQGSQISRFLEGY 241 (323)
Q Consensus 203 ~~P~ivI~~~~~kY~~~~~~~~-~~~~~t~~~I~~Fi~~~ 241 (323)
.+|+++++..........|... +..+++.+.|..|+..+
T Consensus 135 ~vPTlllyk~G~~v~~~vG~~~~~g~~f~~~~le~~L~~~ 174 (175)
T cd02987 135 ALPALLVYKGGELIGNFVRVTEDLGEDFDAEDLESFLVEY 174 (175)
T ss_pred CCCEEEEEECCEEEEEEechHHhcCCCCCHHHHHHHHHhc
Confidence 7999998875432111112111 23478999999998753
|
It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain. |
| >cd03070 PDI_b_ERp44 PDIb family, ERp44 subfamily, first redox inactive TRX-like domain b; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0025 Score=48.30 Aligned_cols=79 Identities=14% Similarity=0.216 Sum_probs=51.1
Q ss_pred ceecCChHHHHHHHHhcCCcccEEEEecCC--h---hHHHHHHHhhcCceeEEeecccchhhHhhcCCCCCCeEEEecCC
Q 020623 29 VSILNSDAEVSDFVENAGTFFPLFIGFGLD--E---SVMSNLALKYKKKAWFAVAKDFSEDTMVLYDFDKVPALVALQPS 103 (323)
Q Consensus 29 v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--~---~~f~~~A~~~~~~~~F~~~~~~~~~~~~~~~~~~~p~ivv~k~~ 103 (323)
+.++.+.++|+. +.... ..+||||++ + ..|+++|..++++|.|.+. +.+.+ ..... ..+.+++|++.
T Consensus 1 Ikef~~~~eL~~-id~~k---r~iIgYF~~~~~~eY~~f~kvA~~lr~dC~F~v~--~G~~~-~~~~~-~~~~~i~frp~ 72 (91)
T cd03070 1 IKEFRNLDELNN-VDRSK---RNIIGYFESKDSDEYDNFRKVANILRDDCSFLVG--FGDVT-KPERP-PGDNIIYFPPG 72 (91)
T ss_pred CceecCHHHHHh-hCcCC---ceEEEEEcCCCChhHHHHHHHHHHHhhcCeEEEE--ecccc-ccccC-CCCCeEEECCC
Confidence 356777778777 44333 479999864 2 3789999999999988766 22212 11111 23567888874
Q ss_pred -CCCCccccCCCC
Q 020623 104 -YNEHNIFYGPFD 115 (323)
Q Consensus 104 -~~~~~~y~g~~~ 115 (323)
.....+|.|+++
T Consensus 73 ~~~~~~~y~G~~t 85 (91)
T cd03070 73 HNAPDMVYLGSLT 85 (91)
T ss_pred CCCCceEEccCCC
Confidence 334467889874
|
It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b domain of ERp44 is likely involved in binding to substrates. |
| >PRK10996 thioredoxin 2; Provisional | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0096 Score=48.86 Aligned_cols=93 Identities=10% Similarity=0.282 Sum_probs=67.1
Q ss_pred ceecCChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeec-ccchhhHhhcCCCCCCeEEE
Q 020623 29 VSILNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAK-DFSEDTMVLYDFDKVPALVA 99 (323)
Q Consensus 29 v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~-~~~~~~~~~~~~~~~p~ivv 99 (323)
+..+ +.++++.+++++. +++|-|..+ ...|.+++.++.+.+.|...+ +...+++.++++.+.|++++
T Consensus 37 ~i~~-~~~~~~~~i~~~k---~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~V~~~Ptlii 112 (139)
T PRK10996 37 VINA-TGETLDKLLQDDL---PVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELSARFRIRSIPTIMI 112 (139)
T ss_pred CEEc-CHHHHHHHHhCCC---eEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHHHHhcCCCccCEEEE
Confidence 4455 6788999887665 467776542 246888888887777665553 23567888999999999999
Q ss_pred ecCCCCCCccccCCCCHHHHHHHHHhh
Q 020623 100 LQPSYNEHNIFYGPFDEEFLEEFIKQN 126 (323)
Q Consensus 100 ~k~~~~~~~~y~g~~~~~~L~~fI~~~ 126 (323)
|+++ +....+.|..+.+.|++||.+.
T Consensus 113 ~~~G-~~v~~~~G~~~~e~l~~~l~~~ 138 (139)
T PRK10996 113 FKNG-QVVDMLNGAVPKAPFDSWLNEA 138 (139)
T ss_pred EECC-EEEEEEcCCCCHHHHHHHHHHh
Confidence 9752 2223456888899999999865
|
|
| >cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44 | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0063 Score=46.93 Aligned_cols=83 Identities=6% Similarity=0.064 Sum_probs=61.8
Q ss_pred CCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCCeEEEEEcCc-chhhHhhhcCCcCCCCCCeEEEEeCCcceeeccCCC
Q 020623 145 DKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIK-QFADFADTFEANKKSKLPKMVVWDGNENYLTVIGSE 223 (323)
Q Consensus 145 ~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~l~F~~vd~~-~~~~~~~~~gl~~~~~~P~ivI~~~~~kY~~~~~~~ 223 (323)
.++++++.|... --..-+.+...|.++|+.++++.|+.+|.+ .++.++..|++ ..+|.+++++......+
T Consensus 17 ~g~~vlV~F~a~-WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~~~~~l~~~~~V---~~~PT~~lf~~g~~~~~----- 87 (100)
T cd02999 17 REDYTAVLFYAS-WCPFSASFRPHFNALSSMFPQIRHLAIEESSIKPSLLSRYGV---VGFPTILLFNSTPRVRY----- 87 (100)
T ss_pred CCCEEEEEEECC-CCHHHHhHhHHHHHHHHHhccCceEEEECCCCCHHHHHhcCC---eecCEEEEEcCCceeEe-----
Confidence 457777777652 123356777899999999988888999998 67888899999 57999999886522222
Q ss_pred CCCCCCCHHHHHHHH
Q 020623 224 SIDEEDQGSQISRFL 238 (323)
Q Consensus 224 ~~~~~~t~~~I~~Fi 238 (323)
.+..+.+.|.+||
T Consensus 88 --~G~~~~~~l~~f~ 100 (100)
T cd02999 88 --NGTRTLDSLAAFY 100 (100)
T ss_pred --cCCCCHHHHHhhC
Confidence 3457888898885
|
CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER. |
| >PRK11509 hydrogenase-1 operon protein HyaE; Provisional | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.02 Score=46.59 Aligned_cols=113 Identities=10% Similarity=0.089 Sum_probs=78.2
Q ss_pred HHHHHHhhcCCCeeecChhhHHHhhcCCCcEEEEEEeCCChhH---HHHHHHHHHHHHHhCC-C-eEEEEEcCcchhhHh
Q 020623 119 LEEFIKQNFLPLSVPINQDTLNLLKDDKRKIVLAIVEDETEEK---SQKLVTTLKAAASANR-E-LVFCYVGIKQFADFA 193 (323)
Q Consensus 119 L~~fI~~~~~Plv~~~t~~~~~~~~~~~~~~v~~f~~~~~~e~---~~~~~~~l~~~A~~~~-~-l~F~~vd~~~~~~~~ 193 (323)
|.+=+..+.+|.+.. .++..+.......|+ |+.. ++.. .....-.|.++|++|+ + +.|+.+|.++.+.++
T Consensus 10 l~~rl~~~g~~~~~~---~~~~~~~~~~~~~vl-~~~g-dp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~LA 84 (132)
T PRK11509 10 LWQRMLARGWTPVSE---SRLDDWLTQAPDGVV-LLSS-DPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIG 84 (132)
T ss_pred HHHHHHHcCCCcccc---ccHHHHHhCCCcEEE-EeCC-CCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHHHH
Confidence 333333456777665 667777665544444 4442 2322 3345578999999998 4 999999999999999
Q ss_pred hhcCCcCCCCCCeEEEEeCCcceeeccCCCCCCCCCCHHHHHHHHHHHHcCc
Q 020623 194 DTFEANKKSKLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEGYREGR 245 (323)
Q Consensus 194 ~~~gl~~~~~~P~ivI~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~~~~~Gk 245 (323)
..||+ ...|.++++...+.-... .+-.+.+.+.+||+.+++--
T Consensus 85 ~~fgV---~siPTLl~FkdGk~v~~i------~G~~~k~~l~~~I~~~L~~~ 127 (132)
T PRK11509 85 DRFGV---FRFPATLVFTGGNYRGVL------NGIHPWAELINLMRGLVEPQ 127 (132)
T ss_pred HHcCC---ccCCEEEEEECCEEEEEE------eCcCCHHHHHHHHHHHhcCc
Confidence 99999 589999998854321111 23467799999999998753
|
|
| >TIGR01068 thioredoxin thioredoxin | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.011 Score=44.60 Aligned_cols=90 Identities=20% Similarity=0.387 Sum_probs=63.1
Q ss_pred ChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeecc-cchhhHhhcCCCCCCeEEEecCCC
Q 020623 34 SDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAKD-FSEDTMVLYDFDKVPALVALQPSY 104 (323)
Q Consensus 34 s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~~-~~~~~~~~~~~~~~p~ivv~k~~~ 104 (323)
+.++++..+.+++. +++|.|... .+.|.+++.++.+++.|+..+. .+.++..++++...|++++|+.+
T Consensus 2 ~~~~~~~~~~~~~~--~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g- 78 (101)
T TIGR01068 2 TDANFDETIASSDK--PVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNG- 78 (101)
T ss_pred CHHHHHHHHhhcCC--cEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCC-
Confidence 35788887776553 466666532 2467888888876677766632 35567888999899999999742
Q ss_pred CCCccccCCCCHHHHHHHHHhh
Q 020623 105 NEHNIFYGPFDEEFLEEFIKQN 126 (323)
Q Consensus 105 ~~~~~y~g~~~~~~L~~fI~~~ 126 (323)
.....+.|..+.+.|.+||+++
T Consensus 79 ~~~~~~~g~~~~~~l~~~l~~~ 100 (101)
T TIGR01068 79 KEVDRSVGALPKAALKQLINKN 100 (101)
T ss_pred cEeeeecCCCCHHHHHHHHHhh
Confidence 2223456877889999999865
|
Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model. |
| >PTZ00051 thioredoxin; Provisional | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.014 Score=44.27 Aligned_cols=75 Identities=9% Similarity=0.262 Sum_probs=57.4
Q ss_pred ChhhHHHhhcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCCeEEEEEcCcchhhHhhhcCCcCCCCCCeEEEEeCC
Q 020623 135 NQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGN 213 (323)
Q Consensus 135 t~~~~~~~~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI~~~~ 213 (323)
+.+.+..+...++++++.|... .-..-..+...+.+++++++++.|+.+|.+....+++.|++ ...|.+++....
T Consensus 7 ~~~~~~~~~~~~~~vli~f~~~-~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~~~~~~v---~~~Pt~~~~~~g 81 (98)
T PTZ00051 7 SQAEFESTLSQNELVIVDFYAE-WCGPCKRIAPFYEECSKEYTKMVFVKVDVDELSEVAEKENI---TSMPTFKVFKNG 81 (98)
T ss_pred CHHHHHHHHhcCCeEEEEEECC-CCHHHHHHhHHHHHHHHHcCCcEEEEEECcchHHHHHHCCC---ceeeEEEEEeCC
Confidence 3456777777677777777763 22334667788999999988899999999988888999999 579999887643
|
|
| >PRK09381 trxA thioredoxin; Provisional | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.013 Score=45.59 Aligned_cols=97 Identities=19% Similarity=0.277 Sum_probs=66.9
Q ss_pred CCceecCChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeecc-cchhhHhhcCCCCCCeE
Q 020623 27 PDVSILNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAKD-FSEDTMVLYDFDKVPAL 97 (323)
Q Consensus 27 p~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~~-~~~~~~~~~~~~~~p~i 97 (323)
..|+.++ .+++++.+.+.+. +++|-|+.. .+.+.+++.++.+.+.|+..+. ...+++.++++...|++
T Consensus 3 ~~v~~~~-~~~~~~~v~~~~~--~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~ 79 (109)
T PRK09381 3 DKIIHLT-DDSFDTDVLKADG--AILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTL 79 (109)
T ss_pred CcceeeC-hhhHHHHHhcCCC--eEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCCCcCCEE
Confidence 4577785 4677764443333 567777542 2477889999987776665532 34667778999899999
Q ss_pred EEecCCCCCCccccCCCCHHHHHHHHHhhc
Q 020623 98 VALQPSYNEHNIFYGPFDEEFLEEFIKQNF 127 (323)
Q Consensus 98 vv~k~~~~~~~~y~g~~~~~~L~~fI~~~~ 127 (323)
++|+++ .....+.|..+.+.|+.||..+.
T Consensus 80 ~~~~~G-~~~~~~~G~~~~~~l~~~i~~~~ 108 (109)
T PRK09381 80 LLFKNG-EVAATKVGALSKGQLKEFLDANL 108 (109)
T ss_pred EEEeCC-eEEEEecCCCCHHHHHHHHHHhc
Confidence 999742 22334678888999999998753
|
|
| >cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.015 Score=44.00 Aligned_cols=92 Identities=13% Similarity=0.280 Sum_probs=61.4
Q ss_pred hhhHHHhhcCC--CcEEEEEEeCCChhHHHHHHHHHHHHHHhCC-CeEEEEEcCcchhhHhhhcCCcCCCCCCeEEEEeC
Q 020623 136 QDTLNLLKDDK--RKIVLAIVEDETEEKSQKLVTTLKAAASANR-ELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDG 212 (323)
Q Consensus 136 ~~~~~~~~~~~--~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~-~l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI~~~ 212 (323)
.+++....... +++++.|... .-..-..+...|.++++++. ++.|+.+|.+..+.+...|++ ..+|.+++++.
T Consensus 2 ~~~~~~~~~~~~~~~v~v~f~~~-~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i---~~~Pt~~~~~~ 77 (97)
T cd02984 2 EEEFEELLKSDASKLLVLHFWAP-WAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEI---TAVPTFVFFRN 77 (97)
T ss_pred HHHHHHHHhhCCCCEEEEEEECC-CCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCC---ccccEEEEEEC
Confidence 34555555443 7777777653 22334667788999999954 499999999877788889999 57999999875
Q ss_pred CcceeeccCCCCCCCCCCHHHHHHHH
Q 020623 213 NENYLTVIGSESIDEEDQGSQISRFL 238 (323)
Q Consensus 213 ~~kY~~~~~~~~~~~~~t~~~I~~Fi 238 (323)
.+.-....| .+.+.|.+.|
T Consensus 78 g~~~~~~~g-------~~~~~l~~~~ 96 (97)
T cd02984 78 GTIVDRVSG-------ADPKELAKKV 96 (97)
T ss_pred CEEEEEEeC-------CCHHHHHHhh
Confidence 432222122 4556666554
|
PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. |
| >cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0089 Score=45.55 Aligned_cols=89 Identities=17% Similarity=0.271 Sum_probs=63.2
Q ss_pred ceecCChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcC---ceeEEeecc-cchhhHhhcCCCCCCe
Q 020623 29 VSILNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKK---KAWFAVAKD-FSEDTMVLYDFDKVPA 96 (323)
Q Consensus 29 v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~---~~~F~~~~~-~~~~~~~~~~~~~~p~ 96 (323)
+..+ +.+++++.+.+.. ++|-|... .+.|.++|.++.+ .+.|+.++. ...+++.++++...|+
T Consensus 2 ~~~l-~~~~f~~~~~~~~----~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt 76 (102)
T cd03005 2 VLEL-TEDNFDHHIAEGN----HFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPT 76 (102)
T ss_pred eeEC-CHHHHHHHhhcCC----EEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCE
Confidence 4567 4578988886553 56666432 2478889998875 566665542 2456788899988999
Q ss_pred EEEecCCCCCCccccCCCCHHHHHHHH
Q 020623 97 LVALQPSYNEHNIFYGPFDEEFLEEFI 123 (323)
Q Consensus 97 ivv~k~~~~~~~~y~g~~~~~~L~~fI 123 (323)
+++|+++ .....|.|..+.++|.+||
T Consensus 77 ~~~~~~g-~~~~~~~G~~~~~~l~~~i 102 (102)
T cd03005 77 LLLFKDG-EKVDKYKGTRDLDSLKEFV 102 (102)
T ss_pred EEEEeCC-CeeeEeeCCCCHHHHHhhC
Confidence 9999763 2344688999999999986
|
Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia. |
| >cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related) | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.009 Score=45.75 Aligned_cols=103 Identities=14% Similarity=0.203 Sum_probs=70.2
Q ss_pred CeeecC-hhhHHHhhcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC-eEEEEEcCcc--hhhHhhhcCCcCCCCCC
Q 020623 130 LSVPIN-QDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQ--FADFADTFEANKKSKLP 205 (323)
Q Consensus 130 lv~~~t-~~~~~~~~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~-l~F~~vd~~~--~~~~~~~~gl~~~~~~P 205 (323)
++..++ ...|.+++.....++++|+. +..+..+.++.|+++|..-+| =+.+|+|+.+ -..++..+-+ ++...|
T Consensus 2 ~ie~i~d~KdfKKLLRTr~NVLvLy~k--s~k~a~~~Lk~~~~~A~~vkG~gT~~~vdCgd~e~kKLCKKlKv-~~~~kp 78 (112)
T cd03067 2 LIEDISDHKDFKKLLRTRNNVLVLYSK--SAKSAEALLKLLSDVAQAVKGQGTIAWIDCGDSESRKLCKKLKV-DPSSKP 78 (112)
T ss_pred ccccccchHHHHHHHhhcCcEEEEEec--chhhHHHHHHHHHHHHHHhcCceeEEEEecCChHHHHHHHHHcc-CCCCCC
Confidence 344444 34677777777788888876 445566778999999999998 7888999975 3468888888 433334
Q ss_pred eEEE--EeCCcceeeccCCCCCCCCCCHHHHHHHHHH
Q 020623 206 KMVV--WDGNENYLTVIGSESIDEEDQGSQISRFLEG 240 (323)
Q Consensus 206 ~ivI--~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~~ 240 (323)
.=.+ +-.++.|...- +..+|..++..|++|
T Consensus 79 ~~~~LkHYKdG~fHkdY-----dR~~t~kSmv~FlrD 110 (112)
T cd03067 79 KPVELKHYKDGDFHTEY-----NRQLTFKSMVAFLRD 110 (112)
T ss_pred CcchhhcccCCCccccc-----cchhhHHHHHHHhhC
Confidence 3332 33356554321 346899999999875
|
PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity. |
| >cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0068 Score=46.39 Aligned_cols=77 Identities=22% Similarity=0.345 Sum_probs=55.6
Q ss_pred cEEEEecC-C-------hhHHHHHHHhhcCceeEEeeccc-chhhHhhcCCC--CCCeEEEecCCCCCCcccc-CCCCHH
Q 020623 50 PLFIGFGL-D-------ESVMSNLALKYKKKAWFAVAKDF-SEDTMVLYDFD--KVPALVALQPSYNEHNIFY-GPFDEE 117 (323)
Q Consensus 50 ~~vVgf~~-~-------~~~f~~~A~~~~~~~~F~~~~~~-~~~~~~~~~~~--~~p~ivv~k~~~~~~~~y~-g~~~~~ 117 (323)
++++.|.. + .+.++++|+++++.+.|+.++.. .++++..+++. +.|++++++...+....+. |.++.+
T Consensus 14 ~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~~~~~~~~~~ 93 (103)
T cd02982 14 PLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSDGKKYLMPEEELTAE 93 (103)
T ss_pred CEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHHHHHHcCCChhhCCEEEEEecccccccCCCccccCHH
Confidence 46666643 2 13678999999988888877432 34578889998 8999999987423444454 445899
Q ss_pred HHHHHHHhh
Q 020623 118 FLEEFIKQN 126 (323)
Q Consensus 118 ~L~~fI~~~ 126 (323)
.|.+||.+.
T Consensus 94 ~l~~fi~~~ 102 (103)
T cd02982 94 SLEEFVEDF 102 (103)
T ss_pred HHHHHHHhh
Confidence 999999763
|
Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w |
| >cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.015 Score=42.49 Aligned_cols=89 Identities=15% Similarity=0.297 Sum_probs=60.8
Q ss_pred HHHhhcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCCeEEEEEcCcchhhHhhhcCCcCCCCCCeEEEEeCCc-cee
Q 020623 139 LNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNE-NYL 217 (323)
Q Consensus 139 ~~~~~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI~~~~~-kY~ 217 (323)
+......++++++.|.... -..-..+...++++++.++++.|+++|....+.++..|++ ...|.+++....+ ...
T Consensus 3 ~~~~~~~~~~~ll~~~~~~-C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v---~~~P~~~~~~~g~~~~~ 78 (93)
T cd02947 3 FEELIKSAKPVVVDFWAPW-CGPCKAIAPVLEELAEEYPKVKFVKVDVDENPELAEEYGV---RSIPTFLFFKNGKEVDR 78 (93)
T ss_pred hHHHHhcCCcEEEEEECCC-ChhHHHhhHHHHHHHHHCCCceEEEEECCCChhHHHhcCc---ccccEEEEEECCEEEEE
Confidence 4444444477777776532 2234566778888888855699999999877778889999 5789999887654 222
Q ss_pred eccCCCCCCCCCCHHHHHHHH
Q 020623 218 TVIGSESIDEEDQGSQISRFL 238 (323)
Q Consensus 218 ~~~~~~~~~~~~t~~~I~~Fi 238 (323)
+. | ..+.+.|..||
T Consensus 79 ~~-g------~~~~~~l~~~i 92 (93)
T cd02947 79 VV-G------ADPKEELEEFL 92 (93)
T ss_pred Ee-c------CCCHHHHHHHh
Confidence 21 2 24567888776
|
Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio |
| >cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.019 Score=44.25 Aligned_cols=94 Identities=14% Similarity=0.206 Sum_probs=66.6
Q ss_pred ChhhHHHhhcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC--eEEEEEcCcchhhHhhhcCCcCCCCCCeEEEEeC
Q 020623 135 NQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE--LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDG 212 (323)
Q Consensus 135 t~~~~~~~~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~--l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI~~~ 212 (323)
|.+++..+...++|+++.|... --..-+.+...|.+++..+++ +.|+.+|.+ ....++.|++ ...|.+++...
T Consensus 6 ~~~~~~~~i~~~~~vvv~F~a~-wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~~~~~~~v---~~~Pt~~~~~~ 80 (102)
T cd02948 6 NQEEWEELLSNKGLTVVDVYQE-WCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TIDTLKRYRG---KCEPTFLFYKN 80 (102)
T ss_pred CHHHHHHHHccCCeEEEEEECC-cCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHHHHHHcCC---CcCcEEEEEEC
Confidence 5667777777778887777653 223446677789999999874 889999988 5577889999 57899988875
Q ss_pred CcceeeccCCCCCCCCCCHHHHHHHHHH
Q 020623 213 NENYLTVIGSESIDEEDQGSQISRFLEG 240 (323)
Q Consensus 213 ~~kY~~~~~~~~~~~~~t~~~I~~Fi~~ 240 (323)
.+.-....| .+...|.++|+.
T Consensus 81 g~~~~~~~G-------~~~~~~~~~i~~ 101 (102)
T cd02948 81 GELVAVIRG-------ANAPLLNKTITE 101 (102)
T ss_pred CEEEEEEec-------CChHHHHHHHhh
Confidence 432222212 466788888764
|
Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which |
| >cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.026 Score=49.01 Aligned_cols=109 Identities=13% Similarity=0.133 Sum_probs=74.7
Q ss_pred hhcCCCeeecChhhHHH-hhcCC--CcEEEEEEeCCChhHHHHHHHHHHHHHHhCCCeEEEEEcCcchhhHhhhcCCcCC
Q 020623 125 QNFLPLSVPINQDTLNL-LKDDK--RKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKK 201 (323)
Q Consensus 125 ~~~~Plv~~~t~~~~~~-~~~~~--~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~l~F~~vd~~~~~~~~~~~gl~~~ 201 (323)
...+..|.+++.+++.. +...+ .++++.|+.. .-..-+.+...|.++|++|+++.|+.++++. ....|++
T Consensus 78 ~~~~G~v~eis~~~f~~eV~~as~~~~VVV~Fya~-wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad~---~~~~~~i--- 150 (192)
T cd02988 78 KSKFGEVYEISKPDYVREVTEASKDTWVVVHLYKD-GIPLCRLLNQHLSELARKFPDTKFVKIISTQ---CIPNYPD--- 150 (192)
T ss_pred hCCCCeEEEeCHHHHHHHHHhcCCCCEEEEEEECC-CCchHHHHHHHHHHHHHHCCCCEEEEEEhHH---hHhhCCC---
Confidence 34577888889888875 44333 3666666653 2234466778999999999889999999864 3567888
Q ss_pred CCCCeEEEEeCCcceeeccCCCCC-CCCCCHHHHHHHHHH
Q 020623 202 SKLPKMVVWDGNENYLTVIGSESI-DEEDQGSQISRFLEG 240 (323)
Q Consensus 202 ~~~P~ivI~~~~~kY~~~~~~~~~-~~~~t~~~I~~Fi~~ 240 (323)
..+|+++++..........|...+ ...++.+.|..++.+
T Consensus 151 ~~lPTlliyk~G~~v~~ivG~~~~gg~~~~~~~lE~~L~~ 190 (192)
T cd02988 151 KNLPTILVYRNGDIVKQFIGLLEFGGMNTTMEDLEWLLVQ 190 (192)
T ss_pred CCCCEEEEEECCEEEEEEeCchhhCCCCCCHHHHHHHHHh
Confidence 589999998764321111233333 237899999988865
|
It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain. |
| >cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.024 Score=44.74 Aligned_cols=92 Identities=13% Similarity=0.146 Sum_probs=64.5
Q ss_pred CceecCChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeec-ccchhhHhhcCCCCCCeEE
Q 020623 28 DVSILNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAK-DFSEDTMVLYDFDKVPALV 98 (323)
Q Consensus 28 ~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~-~~~~~~~~~~~~~~~p~iv 98 (323)
.+..|++.+++++.+.++. +++|-|+.+ ...+.++|.++.+ +.|...+ +...+++.++++...|+++
T Consensus 5 ~v~~i~~~~~~~~~i~~~~---~vvV~f~a~~c~~C~~~~p~l~~la~~~~~-i~f~~Vd~~~~~~l~~~~~v~~vPt~l 80 (113)
T cd02989 5 KYREVSDEKEFFEIVKSSE---RVVCHFYHPEFFRCKIMDKHLEILAKKHLE-TKFIKVNAEKAPFLVEKLNIKVLPTVI 80 (113)
T ss_pred CeEEeCCHHHHHHHHhCCC---cEEEEEECCCCccHHHHHHHHHHHHHHcCC-CEEEEEEcccCHHHHHHCCCccCCEEE
Confidence 4678888899999888776 467766542 2477888988764 5565543 2356788899999999999
Q ss_pred EecCCCCC-C----cccc--CCCCHHHHHHHH
Q 020623 99 ALQPSYNE-H----NIFY--GPFDEEFLEEFI 123 (323)
Q Consensus 99 v~k~~~~~-~----~~y~--g~~~~~~L~~fI 123 (323)
+|+++..- + ..+. ++++.++|++|+
T Consensus 81 ~fk~G~~v~~~~g~~~~~~~~~~~~~~~e~~~ 112 (113)
T cd02989 81 LFKNGKTVDRIVGFEELGGKDDFSTETLEKRL 112 (113)
T ss_pred EEECCEEEEEEECccccCCCCCCCHHHHHHHh
Confidence 99975321 1 1122 467889999997
|
The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit. |
| >cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44 | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0051 Score=47.47 Aligned_cols=71 Identities=10% Similarity=0.153 Sum_probs=52.8
Q ss_pred cEEEEecCC--------hhHHHHHHHhhcCceeEEeecc--cchhhHhhcCCCCCCeEEEecCCCCCCccccCCCCHHHH
Q 020623 50 PLFIGFGLD--------ESVMSNLALKYKKKAWFAVAKD--FSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFL 119 (323)
Q Consensus 50 ~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~~--~~~~~~~~~~~~~~p~ivv~k~~~~~~~~y~g~~~~~~L 119 (323)
+++|-|... ...|.++|+.+.+ ..|...+. ...+++.++++...|++++|+++ ....|.|..+.+.|
T Consensus 20 ~vlV~F~a~WC~~C~~~~p~l~~la~~~~~-~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g--~~~~~~G~~~~~~l 96 (100)
T cd02999 20 YTAVLFYASWCPFSASFRPHFNALSSMFPQ-IRHLAIEESSIKPSLLSRYGVVGFPTILLFNST--PRVRYNGTRTLDSL 96 (100)
T ss_pred EEEEEEECCCCHHHHhHhHHHHHHHHHhcc-CceEEEECCCCCHHHHHhcCCeecCEEEEEcCC--ceeEecCCCCHHHH
Confidence 577877542 2478899998874 44443332 24678889999999999999874 45568899999999
Q ss_pred HHHH
Q 020623 120 EEFI 123 (323)
Q Consensus 120 ~~fI 123 (323)
.+||
T Consensus 97 ~~f~ 100 (100)
T cd02999 97 AAFY 100 (100)
T ss_pred HhhC
Confidence 9996
|
CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER. |
| >cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.019 Score=43.68 Aligned_cols=88 Identities=15% Similarity=0.193 Sum_probs=60.4
Q ss_pred hhcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC-eEEEEEcCcchhhHhhhcCCcCCCCCCeEEEEeCCcceeecc
Q 020623 142 LKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYLTVI 220 (323)
Q Consensus 142 ~~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~-l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI~~~~~kY~~~~ 220 (323)
+...++++++.|... .-..-..+...++++++++++ +.|..+|.+..+.+++.+++ ...|.+++++..+.-...
T Consensus 9 ~~~~~~~vlv~f~a~-~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~v---~~vPt~~i~~~g~~v~~~- 83 (97)
T cd02949 9 YHESDRLILVLYTSP-TCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGI---MGTPTVQFFKDKELVKEI- 83 (97)
T ss_pred HHhCCCeEEEEEECC-CChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCC---eeccEEEEEECCeEEEEE-
Confidence 334556666666642 122335666788899999887 99999999877788889999 589999998754322222
Q ss_pred CCCCCCCCCCHHHHHHHHH
Q 020623 221 GSESIDEEDQGSQISRFLE 239 (323)
Q Consensus 221 ~~~~~~~~~t~~~I~~Fi~ 239 (323)
.+..+.+.|.+|++
T Consensus 84 -----~g~~~~~~~~~~l~ 97 (97)
T cd02949 84 -----SGVKMKSEYREFIE 97 (97)
T ss_pred -----eCCccHHHHHHhhC
Confidence 23356777888763
|
The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress. |
| >cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.015 Score=44.79 Aligned_cols=90 Identities=17% Similarity=0.238 Sum_probs=62.7
Q ss_pred ecCChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcCc-eeEEeecccchhhHhhcCCCCCCeEEEec
Q 020623 31 ILNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKKK-AWFAVAKDFSEDTMVLYDFDKVPALVALQ 101 (323)
Q Consensus 31 ~i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~-~~F~~~~~~~~~~~~~~~~~~~p~ivv~k 101 (323)
.|.|.++++.+++.+. +++|-|... ...|.+++..+.+. ..|...+....+++.++++...|++++|+
T Consensus 3 ~i~~~~~~~~~i~~~~---~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d~~~~~~~~~v~~~Pt~~~~~ 79 (102)
T cd02948 3 EINNQEEWEELLSNKG---LTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEADTIDTLKRYRGKCEPTFLFYK 79 (102)
T ss_pred EccCHHHHHHHHccCC---eEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCCCHHHHHHcCCCcCcEEEEEE
Confidence 4678999999887655 577777542 24778888888643 55665532256788899999999999998
Q ss_pred CCCCCCccccCCCCHHHHHHHHHh
Q 020623 102 PSYNEHNIFYGPFDEEFLEEFIKQ 125 (323)
Q Consensus 102 ~~~~~~~~y~g~~~~~~L~~fI~~ 125 (323)
++ +......|. +.+.|.+||.+
T Consensus 80 ~g-~~~~~~~G~-~~~~~~~~i~~ 101 (102)
T cd02948 80 NG-ELVAVIRGA-NAPLLNKTITE 101 (102)
T ss_pred CC-EEEEEEecC-ChHHHHHHHhh
Confidence 52 222223453 77889998864
|
Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which |
| >cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.021 Score=43.55 Aligned_cols=90 Identities=18% Similarity=0.148 Sum_probs=63.5
Q ss_pred CceecCChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcC-ceeEEeecc-cchhhHhhcCCCCCCeE
Q 020623 28 DVSILNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKK-KAWFAVAKD-FSEDTMVLYDFDKVPAL 97 (323)
Q Consensus 28 ~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~-~~~F~~~~~-~~~~~~~~~~~~~~p~i 97 (323)
.|..| +.+++++.++. . .+|-|... .+.|.++|..+.. .+.|+..+. .+.+++.++++...|++
T Consensus 2 ~v~~l-~~~~f~~~~~~-~----~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~Pt~ 75 (101)
T cd02994 2 NVVEL-TDSNWTLVLEG-E----WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFVTALPTI 75 (101)
T ss_pred ceEEc-ChhhHHHHhCC-C----EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCCcccCEE
Confidence 36677 46788887743 2 45666542 3478888887654 466665532 35677889999999999
Q ss_pred EEecCCCCCCccccCCCCHHHHHHHHHh
Q 020623 98 VALQPSYNEHNIFYGPFDEEFLEEFIKQ 125 (323)
Q Consensus 98 vv~k~~~~~~~~y~g~~~~~~L~~fI~~ 125 (323)
++++++ +...|.|+.+.++|.+||++
T Consensus 76 ~~~~~g--~~~~~~G~~~~~~l~~~i~~ 101 (101)
T cd02994 76 YHAKDG--VFRRYQGPRDKEDLISFIEE 101 (101)
T ss_pred EEeCCC--CEEEecCCCCHHHHHHHHhC
Confidence 999763 33467899999999999964
|
TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC. |
| >cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related) | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.022 Score=43.39 Aligned_cols=90 Identities=17% Similarity=0.214 Sum_probs=62.2
Q ss_pred ceecCChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhc--CceeEEeecc-c--chhhHhhcCCCCCC
Q 020623 29 VSILNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYK--KKAWFAVAKD-F--SEDTMVLYDFDKVP 95 (323)
Q Consensus 29 v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~--~~~~F~~~~~-~--~~~~~~~~~~~~~p 95 (323)
+..++ .+.++..+++.. +++|-|..+ .+.+.+++..+. ..+.|+..+. . ..+++.++++...|
T Consensus 2 ~~~l~-~~~~~~~~~~~~---~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P 77 (104)
T cd02997 2 VVHLT-DEDFRKFLKKEK---HVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFP 77 (104)
T ss_pred eEEec-hHhHHHHHhhCC---CEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCcccc
Confidence 45664 568888887776 467777542 246677887776 3455554432 2 45677889998899
Q ss_pred eEEEecCCCCCCccccCCCCHHHHHHHH
Q 020623 96 ALVALQPSYNEHNIFYGPFDEEFLEEFI 123 (323)
Q Consensus 96 ~ivv~k~~~~~~~~y~g~~~~~~L~~fI 123 (323)
++++|+++ +....|.|..+.+.|.+||
T Consensus 78 t~~~~~~g-~~~~~~~g~~~~~~l~~~l 104 (104)
T cd02997 78 TFKYFENG-KFVEKYEGERTAEDIIEFM 104 (104)
T ss_pred EEEEEeCC-CeeEEeCCCCCHHHHHhhC
Confidence 99999863 3344678888899999885
|
PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. |
| >cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.048 Score=43.37 Aligned_cols=98 Identities=18% Similarity=0.306 Sum_probs=64.5
Q ss_pred eeecChhhHHHhhcCCCcEEEEEEe--CCChhHHHHHHHHHHHHHHhCC----CeEEEEEcCcc-----hhhHhhhcCCc
Q 020623 131 SVPINQDTLNLLKDDKRKIVLAIVE--DETEEKSQKLVTTLKAAASANR----ELVFCYVGIKQ-----FADFADTFEAN 199 (323)
Q Consensus 131 v~~~t~~~~~~~~~~~~~~v~~f~~--~~~~e~~~~~~~~l~~~A~~~~----~l~F~~vd~~~-----~~~~~~~~gl~ 199 (323)
+..|+.+||.......+.+++-|.. .- -.+ ...++++|.++. .+.++-||+++ ...+++.|||
T Consensus 3 ~v~L~~~nF~~~v~~~~~vlV~F~A~~Pw-c~k----~~~~~~LA~e~~~aa~~v~lakVd~~d~~~~~~~~L~~~y~I- 76 (116)
T cd03007 3 CVDLDTVTFYKVIPKFKYSLVKFDTAYPY-GEK----HEAFTRLAESSASATDDLLVAEVGIKDYGEKLNMELGERYKL- 76 (116)
T ss_pred eeECChhhHHHHHhcCCcEEEEEeCCCCC-CCC----hHHHHHHHHHHHhhcCceEEEEEecccccchhhHHHHHHhCC-
Confidence 5789999999988776666555554 21 111 134555554432 39999999954 3457899999
Q ss_pred CCCCCCeEEEEeCCc--ceeeccCCCCCCCC-CCHHHHHHHHHH
Q 020623 200 KKSKLPKMVVWDGNE--NYLTVIGSESIDEE-DQGSQISRFLEG 240 (323)
Q Consensus 200 ~~~~~P~ivI~~~~~--kY~~~~~~~~~~~~-~t~~~I~~Fi~~ 240 (323)
+...+|.|.+....+ ....+ ++. -+.++|.+||+.
T Consensus 77 ~~~gyPTl~lF~~g~~~~~~~Y------~G~~r~~~~lv~~v~~ 114 (116)
T cd03007 77 DKESYPVIYLFHGGDFENPVPY------SGADVTVDALQRFLKG 114 (116)
T ss_pred CcCCCCEEEEEeCCCcCCCccC------CCCcccHHHHHHHHHh
Confidence 545899998877531 21111 233 788999999875
|
It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase. |
| >cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.021 Score=43.09 Aligned_cols=85 Identities=15% Similarity=0.289 Sum_probs=58.6
Q ss_pred HHHHHHHhc-CCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeec-ccchhhHhhcCCCCCCeEEEecCCCCC
Q 020623 37 EVSDFVENA-GTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAK-DFSEDTMVLYDFDKVPALVALQPSYNE 106 (323)
Q Consensus 37 ~l~~fl~~~-~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~-~~~~~~~~~~~~~~~p~ivv~k~~~~~ 106 (323)
++++.+.++ +. +++|-|..+ .+.+.+++..+.+.+.|+.++ +...+++.++++...|++++|+++ ..
T Consensus 2 ~f~~~i~~~~~~--~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g-~~ 78 (96)
T cd02956 2 NFQQVLQESTQV--PVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAG-QP 78 (96)
T ss_pred ChHHHHHhcCCC--eEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCC-EE
Confidence 345555433 33 567777542 246788898887766665553 236678889999999999999742 22
Q ss_pred CccccCCCCHHHHHHHHH
Q 020623 107 HNIFYGPFDEEFLEEFIK 124 (323)
Q Consensus 107 ~~~y~g~~~~~~L~~fI~ 124 (323)
...+.|..+.+.|.+||.
T Consensus 79 ~~~~~g~~~~~~l~~~l~ 96 (96)
T cd02956 79 VDGFQGAQPEEQLRQMLD 96 (96)
T ss_pred eeeecCCCCHHHHHHHhC
Confidence 335778888999999973
|
Its gene has been sequenced from several gammaproteobacteria and actinobacteria. |
| >cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.042 Score=42.29 Aligned_cols=93 Identities=11% Similarity=0.177 Sum_probs=63.3
Q ss_pred hhHHHhhcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCC---C-eEEEEEcCcchhhHhhhcCCcCCCCCCeEEEEeC
Q 020623 137 DTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANR---E-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDG 212 (323)
Q Consensus 137 ~~~~~~~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~---~-l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI~~~ 212 (323)
+++..+.. ++++++.|... .=..-+.+...|.++|+.++ . +.++.+|.+.++.+++.+++ ..+|.+++++.
T Consensus 7 ~~~~~~~~-~~~vlv~f~a~-wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I---~~~Pt~~l~~~ 81 (104)
T cd03000 7 DSFKDVRK-EDIWLVDFYAP-WCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGV---RGYPTIKLLKG 81 (104)
T ss_pred hhhhhhcc-CCeEEEEEECC-CCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCC---ccccEEEEEcC
Confidence 45555433 45666666542 12233455667888888763 2 88889999888888889999 57999999865
Q ss_pred CcceeeccCCCCCCCCCCHHHHHHHHHHH
Q 020623 213 NENYLTVIGSESIDEEDQGSQISRFLEGY 241 (323)
Q Consensus 213 ~~kY~~~~~~~~~~~~~t~~~I~~Fi~~~ 241 (323)
...+.+ .+..+.+.|.+|++++
T Consensus 82 ~~~~~~-------~G~~~~~~l~~~~~~~ 103 (104)
T cd03000 82 DLAYNY-------RGPRTKDDIVEFANRV 103 (104)
T ss_pred CCceee-------cCCCCHHHHHHHHHhh
Confidence 433332 2357889999999875
|
The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase. |
| >cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.027 Score=44.36 Aligned_cols=97 Identities=18% Similarity=0.166 Sum_probs=64.8
Q ss_pred HHHHHHHhcCCCceecCChHHHHHHHHhcCCcccEEEEecCC----------hhHHHHHHHhhcCceeEEeec-ccchhh
Q 020623 17 LVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFGLD----------ESVMSNLALKYKKKAWFAVAK-DFSEDT 85 (323)
Q Consensus 17 Iv~~l~k~~~p~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~----------~~~f~~~A~~~~~~~~F~~~~-~~~~~~ 85 (323)
+|.+|....+=+ .+ |...++++++.+. +++|-|..+ ...+.++|++|.+.+.|+..+ +-.+++
T Consensus 2 ~~~~~~~~~~~~--~~-~~~~~~~~~~~~~---~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~l 75 (111)
T cd02965 2 LVARLQTRHGWP--RV-DAATLDDWLAAGG---DLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQAL 75 (111)
T ss_pred HhHHHHHhcCCc--cc-ccccHHHHHhCCC---CEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHHH
Confidence 345555544333 45 5678888886666 467766432 247889999998777676553 346788
Q ss_pred HhhcCCCCCCeEEEecCCCCCCccccCCCCHHHHH
Q 020623 86 MVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLE 120 (323)
Q Consensus 86 ~~~~~~~~~p~ivv~k~~~~~~~~y~g~~~~~~L~ 120 (323)
+.+|++.+.|++++|+++ .....+.|..+.++|.
T Consensus 76 a~~f~V~sIPTli~fkdG-k~v~~~~G~~~~~e~~ 109 (111)
T cd02965 76 AARFGVLRTPALLFFRDG-RYVGVLAGIRDWDEYV 109 (111)
T ss_pred HHHcCCCcCCEEEEEECC-EEEEEEeCccCHHHHh
Confidence 999999999999999963 2222455766666554
|
They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway. |
| >PHA02278 thioredoxin-like protein | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.023 Score=44.18 Aligned_cols=86 Identities=16% Similarity=0.193 Sum_probs=58.3
Q ss_pred CChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeec-cc----chhhHhhcCCCCCCeEEE
Q 020623 33 NSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAK-DF----SEDTMVLYDFDKVPALVA 99 (323)
Q Consensus 33 ~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~-~~----~~~~~~~~~~~~~p~ivv 99 (323)
+|.+++++.+.+.+ +++|-|... .+.|.++|.++.....|...+ +. .++++.++++.+.|++++
T Consensus 2 ~~~~~~~~~i~~~~---~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~ 78 (103)
T PHA02278 2 NSLVDLNTAIRQKK---DVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIG 78 (103)
T ss_pred CCHHHHHHHHhCCC---cEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEE
Confidence 56788988887665 577877643 357888887754444444332 11 157888999999999999
Q ss_pred ecCCCCCCccccCCCCHHHHHHH
Q 020623 100 LQPSYNEHNIFYGPFDEEFLEEF 122 (323)
Q Consensus 100 ~k~~~~~~~~y~g~~~~~~L~~f 122 (323)
|+++ .......|..+.+.|.+|
T Consensus 79 fk~G-~~v~~~~G~~~~~~l~~~ 100 (103)
T PHA02278 79 YKDG-QLVKKYEDQVTPMQLQEL 100 (103)
T ss_pred EECC-EEEEEEeCCCCHHHHHhh
Confidence 9963 222235577777788776
|
|
| >TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.03 Score=55.01 Aligned_cols=97 Identities=11% Similarity=0.107 Sum_probs=67.7
Q ss_pred CCCceecCChHHHHHHHH--hcCCcccEEEEecCC--------hhHHHHHHHhhcCc-eeEEeecc-cc-hhh-HhhcCC
Q 020623 26 APDVSILNSDAEVSDFVE--NAGTFFPLFIGFGLD--------ESVMSNLALKYKKK-AWFAVAKD-FS-EDT-MVLYDF 91 (323)
Q Consensus 26 ~p~v~~i~s~~~l~~fl~--~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~-~~F~~~~~-~~-~~~-~~~~~~ 91 (323)
.+.|..|+ .+.+++.++ +.+. +++|-|... ...|.++|.++.+. +.|+.++. .+ .++ +.++++
T Consensus 350 ~~~Vv~L~-~~nf~~~v~~~~~~k--~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I 426 (463)
T TIGR00424 350 SNNVVSLS-RPGIENLLKLEERKE--AWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQL 426 (463)
T ss_pred CCCeEECC-HHHHHHHHhhhcCCC--eEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCC
Confidence 44678884 678999875 2222 577777542 35789999998764 55655532 12 233 357899
Q ss_pred CCCCeEEEecCCCCCCcccc-CCCCHHHHHHHHHh
Q 020623 92 DKVPALVALQPSYNEHNIFY-GPFDEEFLEEFIKQ 125 (323)
Q Consensus 92 ~~~p~ivv~k~~~~~~~~y~-g~~~~~~L~~fI~~ 125 (323)
...|++++|+++......|. |..+.+.|..||+.
T Consensus 427 ~~~PTii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~ 461 (463)
T TIGR00424 427 GSFPTILFFPKHSSRPIKYPSEKRDVDSLMSFVNL 461 (463)
T ss_pred CccceEEEEECCCCCceeCCCCCCCHHHHHHHHHh
Confidence 89999999998644556787 58999999999975
|
This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis. |
| >cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.045 Score=43.17 Aligned_cols=88 Identities=8% Similarity=0.111 Sum_probs=61.5
Q ss_pred CCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCCeEEEEEcCcchhhHhhhcCCcCCCCCCeEEEEeCCc---ceeeccC
Q 020623 145 DKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNE---NYLTVIG 221 (323)
Q Consensus 145 ~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI~~~~~---kY~~~~~ 221 (323)
.+.++++.|... .=..-+.+...+.++|..+..+.|..+|.+..+.+++.||+ ...|.+++.+.++ +..+
T Consensus 21 ~~~~vvv~f~a~-wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~~~~l~~~~~v---~~vPt~~i~~~g~~~~~~~~--- 93 (113)
T cd02975 21 NPVDLVVFSSKE-GCQYCEVTKQLLEELSELSDKLKLEIYDFDEDKEKAEKYGV---ERVPTTIFLQDGGKDGGIRY--- 93 (113)
T ss_pred CCeEEEEEeCCC-CCCChHHHHHHHHHHHHhcCceEEEEEeCCcCHHHHHHcCC---CcCCEEEEEeCCeecceEEE---
Confidence 345555544331 11234667788888998885599999999988888899999 5789999987532 2222
Q ss_pred CCCCCCCCCHHHHHHHHHHHHc
Q 020623 222 SESIDEEDQGSQISRFLEGYRE 243 (323)
Q Consensus 222 ~~~~~~~~t~~~I~~Fi~~~~~ 243 (323)
.+......+.+||+++.+
T Consensus 94 ----~G~~~~~el~~~i~~i~~ 111 (113)
T cd02975 94 ----YGLPAGYEFASLIEDIVR 111 (113)
T ss_pred ----EecCchHHHHHHHHHHHh
Confidence 123567899999998864
|
PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions. |
| >cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.082 Score=44.13 Aligned_cols=82 Identities=15% Similarity=0.283 Sum_probs=59.7
Q ss_pred CeeecChhhHHHhhc-C-CCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC--eEEEEEcCcchhhHhhhcCCcCC----
Q 020623 130 LSVPINQDTLNLLKD-D-KRKIVLAIVEDETEEKSQKLVTTLKAAASANRE--LVFCYVGIKQFADFADTFEANKK---- 201 (323)
Q Consensus 130 lv~~~t~~~~~~~~~-~-~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~--l~F~~vd~~~~~~~~~~~gl~~~---- 201 (323)
.+.+++++++..... . +.++++.|... .-..-+.+...+.++|+++.+ +.|+.+|.++++.+++.|++ ..
T Consensus 29 ~v~~l~~~~f~~~l~~~~~~~vvV~Fya~-wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V-~~~~~v 106 (152)
T cd02962 29 HIKYFTPKTLEEELERDKRVTWLVEFFTT-WSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRV-STSPLS 106 (152)
T ss_pred ccEEcCHHHHHHHHHhcCCCEEEEEEECC-CCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCc-eecCCc
Confidence 456777777777543 2 34566666653 223456777899999999873 99999999998888999998 32
Q ss_pred CCCCeEEEEeCC
Q 020623 202 SKLPKMVVWDGN 213 (323)
Q Consensus 202 ~~~P~ivI~~~~ 213 (323)
.++|.+++....
T Consensus 107 ~~~PT~ilf~~G 118 (152)
T cd02962 107 KQLPTIILFQGG 118 (152)
T ss_pred CCCCEEEEEECC
Confidence 358999988754
|
It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail. |
| >cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.047 Score=41.94 Aligned_cols=92 Identities=11% Similarity=0.095 Sum_probs=58.7
Q ss_pred hHHHhhcCCCcEEEEEEeCCChhHHHHHHHHH---HHHHHhCCC-eEEEEEcCcc----hhhHhhhcCCcCCCCCCeEEE
Q 020623 138 TLNLLKDDKRKIVLAIVEDETEEKSQKLVTTL---KAAASANRE-LVFCYVGIKQ----FADFADTFEANKKSKLPKMVV 209 (323)
Q Consensus 138 ~~~~~~~~~~~~v~~f~~~~~~e~~~~~~~~l---~~~A~~~~~-l~F~~vd~~~----~~~~~~~~gl~~~~~~P~ivI 209 (323)
.+.+....++++++.|... .=..-+.+...+ .++++.+++ +.|+.+|.++ ...++..|++ ...|.+++
T Consensus 3 ~~~~~~~~~k~vlv~f~a~-wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i---~~~Pti~~ 78 (104)
T cd02953 3 ALAQALAQGKPVFVDFTAD-WCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGV---FGPPTYLF 78 (104)
T ss_pred HHHHHHHcCCeEEEEEEcc-hhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCC---CCCCEEEE
Confidence 3445555677877766642 112223444333 466777774 9999999865 4567888999 57999999
Q ss_pred EeC-Ccc-eeeccCCCCCCCCCCHHHHHHHHH
Q 020623 210 WDG-NEN-YLTVIGSESIDEEDQGSQISRFLE 239 (323)
Q Consensus 210 ~~~-~~k-Y~~~~~~~~~~~~~t~~~I~~Fi~ 239 (323)
+++ +++ .... .+..+.++|.++++
T Consensus 79 ~~~~~g~~~~~~------~G~~~~~~l~~~l~ 104 (104)
T cd02953 79 YGPGGEPEPLRL------PGFLTADEFLEALE 104 (104)
T ss_pred ECCCCCCCCccc------ccccCHHHHHHHhC
Confidence 986 542 2221 34577888888763
|
It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes. |
| >PTZ00443 Thioredoxin domain-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.047 Score=48.60 Aligned_cols=97 Identities=16% Similarity=0.213 Sum_probs=70.1
Q ss_pred CCceecCChHHHHHHHHhc----CCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeecc-cchhhHhhcCCCC
Q 020623 27 PDVSILNSDAEVSDFVENA----GTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAKD-FSEDTMVLYDFDK 93 (323)
Q Consensus 27 p~v~~i~s~~~l~~fl~~~----~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~~-~~~~~~~~~~~~~ 93 (323)
..+.++ +.+.+++++... +. +++|-|... .+.|.++|..+++.+.|+..+. ...+++.++++.+
T Consensus 30 ~~Vv~L-t~~nF~~~v~~~~~~~~~--~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~l~~~~~I~~ 106 (224)
T PTZ00443 30 NALVLL-NDKNFEKLTQASTGATTG--PWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRALNLAKRFAIKG 106 (224)
T ss_pred CCcEEC-CHHHHHHHHhhhcccCCC--CEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHHHHHHcCCCc
Confidence 457778 578999887642 12 567777542 2478899999987777776532 3567888999999
Q ss_pred CCeEEEecCCCCCCccc-cCCCCHHHHHHHHHhhcC
Q 020623 94 VPALVALQPSYNEHNIF-YGPFDEEFLEEFIKQNFL 128 (323)
Q Consensus 94 ~p~ivv~k~~~~~~~~y-~g~~~~~~L~~fI~~~~~ 128 (323)
.|++++|+++ ....| .|..+.++|.+|+..+.-
T Consensus 107 ~PTl~~f~~G--~~v~~~~G~~s~e~L~~fi~~~~~ 140 (224)
T PTZ00443 107 YPTLLLFDKG--KMYQYEGGDRSTEKLAAFALGDFK 140 (224)
T ss_pred CCEEEEEECC--EEEEeeCCCCCHHHHHHHHHHHHH
Confidence 9999999853 33334 477899999999987753
|
|
| >PRK11509 hydrogenase-1 operon protein HyaE; Provisional | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.041 Score=44.71 Aligned_cols=107 Identities=14% Similarity=0.150 Sum_probs=71.8
Q ss_pred HHHHHHHHhcCCCceecCChHHHHHHHHhcCCcccEEEEecCC-------hh---HHHHHHHhhcC-ceeEEeec-ccch
Q 020623 16 LLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFGLD-------ES---VMSNLALKYKK-KAWFAVAK-DFSE 83 (323)
Q Consensus 16 ~Iv~~l~k~~~p~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~-------~~---~f~~~A~~~~~-~~~F~~~~-~~~~ 83 (323)
.++.-|..+ |- ..++ .+.+++|+...+. .++.+..+ .+ ...++|++|.+ ++.|+.++ +.+.
T Consensus 9 ~l~~rl~~~-g~--~~~~-~~~~~~~~~~~~~---~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~ 81 (132)
T PRK11509 9 ALWQRMLAR-GW--TPVS-ESRLDDWLTQAPD---GVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSE 81 (132)
T ss_pred HHHHHHHHc-CC--Cccc-cccHHHHHhCCCc---EEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCH
Confidence 345555553 33 3443 4788899988774 34433211 11 57899999973 47777663 3477
Q ss_pred hhHhhcCCCCCCeEEEecCCCCCCccccCCCCHHHHHHHHHhhcCCC
Q 020623 84 DTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQNFLPL 130 (323)
Q Consensus 84 ~~~~~~~~~~~p~ivv~k~~~~~~~~y~g~~~~~~L~~fI~~~~~Pl 130 (323)
+++.+||+.+.|++++||++ +......|-.+.+.+.+||....-+.
T Consensus 82 ~LA~~fgV~siPTLl~FkdG-k~v~~i~G~~~k~~l~~~I~~~L~~~ 127 (132)
T PRK11509 82 AIGDRFGVFRFPATLVFTGG-NYRGVLNGIHPWAELINLMRGLVEPQ 127 (132)
T ss_pred HHHHHcCCccCCEEEEEECC-EEEEEEeCcCCHHHHHHHHHHHhcCc
Confidence 89999999999999999973 22224567778899999998765443
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.059 Score=49.38 Aligned_cols=97 Identities=16% Similarity=0.307 Sum_probs=73.0
Q ss_pred ceecCChHHHHH-HHHhcCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeecc-cchhhHhhcCCCCCCeEE
Q 020623 29 VSILNSDAEVSD-FVENAGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAKD-FSEDTMVLYDFDKVPALV 98 (323)
Q Consensus 29 v~~i~s~~~l~~-fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~~-~~~~~~~~~~~~~~p~iv 98 (323)
++.++ ..+++. +++.... .|++|.|... .+..++++..|+..+.++.++. .++.++..+|+...|+++
T Consensus 25 I~dvT-~anfe~~V~~~S~~-~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaqfgiqsIPtV~ 102 (304)
T COG3118 25 IKDVT-EANFEQEVIQSSRE-VPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQFGVQSIPTVY 102 (304)
T ss_pred ceech-HhHHHHHHHHHccC-CCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHHhCcCcCCeEE
Confidence 67785 477765 4444433 3889988542 2467899999999988887753 477888999999999999
Q ss_pred EecCCCCCC-ccccCCCCHHHHHHHHHhhcCC
Q 020623 99 ALQPSYNEH-NIFYGPFDEEFLEEFIKQNFLP 129 (323)
Q Consensus 99 v~k~~~~~~-~~y~g~~~~~~L~~fI~~~~~P 129 (323)
+|+. +.+ .-|.|..-++.|+.|+..+.-+
T Consensus 103 af~d--GqpVdgF~G~qPesqlr~~ld~~~~~ 132 (304)
T COG3118 103 AFKD--GQPVDGFQGAQPESQLRQFLDKVLPA 132 (304)
T ss_pred EeeC--CcCccccCCCCcHHHHHHHHHHhcCh
Confidence 9985 333 3588888889999999887655
|
|
| >cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.064 Score=41.20 Aligned_cols=86 Identities=16% Similarity=0.182 Sum_probs=56.9
Q ss_pred HHHHHHHHhcCCcccEEEEecCC--h------hHH---HHHHHhhcCceeEEeeccc-----chhhHhhcCCCCCCeEEE
Q 020623 36 AEVSDFVENAGTFFPLFIGFGLD--E------SVM---SNLALKYKKKAWFAVAKDF-----SEDTMVLYDFDKVPALVA 99 (323)
Q Consensus 36 ~~l~~fl~~~~~~~~~vVgf~~~--~------~~f---~~~A~~~~~~~~F~~~~~~-----~~~~~~~~~~~~~p~ivv 99 (323)
+++++.++.+. +++|-|..+ . ..+ .+++..+.+.+.|...+-. ..+++.++++...|++++
T Consensus 2 ~~~~~~~~~~k---~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~ 78 (104)
T cd02953 2 AALAQALAQGK---PVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYLF 78 (104)
T ss_pred HHHHHHHHcCC---eEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEE
Confidence 46777777776 567777543 1 122 3567777656666544311 346778899999999999
Q ss_pred ecC-CCCCCccccCCCCHHHHHHHHH
Q 020623 100 LQP-SYNEHNIFYGPFDEEFLEEFIK 124 (323)
Q Consensus 100 ~k~-~~~~~~~y~g~~~~~~L~~fI~ 124 (323)
|++ ..+....+.|..+.+.|.+||+
T Consensus 79 ~~~~~g~~~~~~~G~~~~~~l~~~l~ 104 (104)
T cd02953 79 YGPGGEPEPLRLPGFLTADEFLEALE 104 (104)
T ss_pred ECCCCCCCCcccccccCHHHHHHHhC
Confidence 986 2233445678889999999873
|
It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes. |
| >PLN02309 5'-adenylylsulfate reductase | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.057 Score=53.03 Aligned_cols=97 Identities=15% Similarity=0.167 Sum_probs=68.1
Q ss_pred CCceecCChHHHHHHHH--hcCCcccEEEEecCC--------hhHHHHHHHhhcCc-eeEEeecc--cchhhHh-hcCCC
Q 020623 27 PDVSILNSDAEVSDFVE--NAGTFFPLFIGFGLD--------ESVMSNLALKYKKK-AWFAVAKD--FSEDTMV-LYDFD 92 (323)
Q Consensus 27 p~v~~i~s~~~l~~fl~--~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~-~~F~~~~~--~~~~~~~-~~~~~ 92 (323)
+.|..+ +.+++++++. +.+. +++|-|... ...|.++|.++... +.|+..+. ...+++. ++++.
T Consensus 345 ~~Vv~L-t~~nfe~ll~~~~~~k--~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I~ 421 (457)
T PLN02309 345 QNVVAL-SRAGIENLLKLENRKE--PWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQLG 421 (457)
T ss_pred CCcEEC-CHHHHHHHHHhhcCCC--eEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCCc
Confidence 467778 4688888774 2332 467776542 35788999988654 77766642 2345564 58999
Q ss_pred CCCeEEEecCCCCCCcccc-CCCCHHHHHHHHHhh
Q 020623 93 KVPALVALQPSYNEHNIFY-GPFDEEFLEEFIKQN 126 (323)
Q Consensus 93 ~~p~ivv~k~~~~~~~~y~-g~~~~~~L~~fI~~~ 126 (323)
..|++++|+++......|. |..+.+.|..||+.-
T Consensus 422 ~~PTil~f~~g~~~~v~Y~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 422 SFPTILLFPKNSSRPIKYPSEKRDVDSLLSFVNSL 456 (457)
T ss_pred eeeEEEEEeCCCCCeeecCCCCcCHHHHHHHHHHh
Confidence 9999999987644556787 478999999999863
|
|
| >KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.089 Score=48.14 Aligned_cols=179 Identities=15% Similarity=0.238 Sum_probs=106.2
Q ss_pred HHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcCc---eeEEeeccc-chhhHhhcCCCCCCeEEEecCCCCCC
Q 020623 40 DFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKKK---AWFAVAKDF-SEDTMVLYDFDKVPALVALQPSYNEH 107 (323)
Q Consensus 40 ~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~---~~F~~~~~~-~~~~~~~~~~~~~p~ivv~k~~~~~~ 107 (323)
+|+.+.+.. ..+|-|... ++...++...+++. +..+..+.+ =+.++..+++.+.|+|.++|. +..
T Consensus 36 kFkdnkddd-iW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~kg--d~a 112 (468)
T KOG4277|consen 36 KFKDNKDDD-IWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKFFKG--DHA 112 (468)
T ss_pred HhhhcccCC-eEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEEecC--Cee
Confidence 466543322 578887531 34667777766653 222322221 246777899999999999995 566
Q ss_pred ccccCCCCHHHHHHHHHhhcCCCeeecChhhHH--HhhcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCCeEEEEEc
Q 020623 108 NIFYGPFDEEFLEEFIKQNFLPLSVPINQDTLN--LLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVG 185 (323)
Q Consensus 108 ~~y~g~~~~~~L~~fI~~~~~Plv~~~t~~~~~--~~~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~l~F~~vd 185 (323)
..|.|+.+.++|..|....+-|++.+++..... .+-...+|..++| - +.+ --+.+.+.++|...-.+...+..
T Consensus 113 ~dYRG~R~Kd~iieFAhR~a~aiI~pi~enQ~~fehlq~Rhq~ffVf~-G--tge--~PL~d~fidAASe~~~~a~FfSa 187 (468)
T KOG4277|consen 113 IDYRGGREKDAIIEFAHRCAAAIIEPINENQIEFEHLQARHQPFFVFF-G--TGE--GPLFDAFIDAASEKFSVARFFSA 187 (468)
T ss_pred eecCCCccHHHHHHHHHhcccceeeecChhHHHHHHHhhccCceEEEE-e--CCC--CcHHHHHHHHhhhheeeeeeecc
Confidence 678899999999999999999999999974433 2222335554433 2 122 23556777777754222222221
Q ss_pred CcchhhHh-hhcCCcCCCCCCeEEEEeCCcceeeccCCCCCCCCCCHHHHHHHHHH
Q 020623 186 IKQFADFA-DTFEANKKSKLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEG 240 (323)
Q Consensus 186 ~~~~~~~~-~~~gl~~~~~~P~ivI~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~~ 240 (323)
.. ..+ ++-.+ ...|++++...+ .|... ++.+.+.+++||+.
T Consensus 188 se---eVaPe~~~~---kempaV~VFKDe-tf~i~-------de~dd~dLseWinR 229 (468)
T KOG4277|consen 188 SE---EVAPEENDA---KEMPAVAVFKDE-TFEIE-------DEGDDEDLSEWINR 229 (468)
T ss_pred cc---ccCCcccch---hhccceEEEccc-eeEEE-------ecCchhHHHHHHhH
Confidence 11 111 22223 456888876643 35442 23455778888864
|
|
| >cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.062 Score=42.59 Aligned_cols=73 Identities=16% Similarity=0.222 Sum_probs=54.3
Q ss_pred hhHHHhhc--CCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC-eEEEEEcCcchhhHhhhcCCcCCCCCCeEEEEeCC
Q 020623 137 DTLNLLKD--DKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGN 213 (323)
Q Consensus 137 ~~~~~~~~--~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~-l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI~~~~ 213 (323)
+.+..... .++++++-|... --..-+.+...|.++|.++++ +.|+.+|.++.+.+.+.||+ ...|.++++...
T Consensus 3 ~~~~~~i~~~~~~~vVV~F~A~-WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~la~~~~V---~~iPTf~~fk~G 78 (114)
T cd02954 3 WAVDQAILSEEEKVVVIRFGRD-WDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDFNKMYEL---YDPPTVMFFFRN 78 (114)
T ss_pred HHHHHHHhccCCCEEEEEEECC-CChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHcCC---CCCCEEEEEECC
Confidence 34444443 345666666542 112345677899999999998 89999999999999999999 579999988854
|
It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing. |
| >PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ] | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.18 Score=40.17 Aligned_cols=104 Identities=18% Similarity=0.342 Sum_probs=62.6
Q ss_pred CCeeecChhhHHHhhcCCCcEEEEEEeCCChhHHHHHHHHHHHHH-Hh---CCCeEEEEEcCcchh-----hHhhhcCCc
Q 020623 129 PLSVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAA-SA---NRELVFCYVGIKQFA-----DFADTFEAN 199 (323)
Q Consensus 129 Plv~~~t~~~~~~~~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A-~~---~~~l~F~~vd~~~~~-----~~~~~~gl~ 199 (323)
+-+..++.-+|.++...-+-+++=| +. .. ..-+-.+.++.+| +. -.++.++.|..++|. .+.+.||+
T Consensus 4 ~G~v~LD~~tFdKvi~kf~~~LVKF-D~-ay-PyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i- 79 (126)
T PF07912_consen 4 KGCVPLDELTFDKVIPKFKYVLVKF-DV-AY-PYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKI- 79 (126)
T ss_dssp TTSEEESTTHHHHHGGGSSEEEEEE-EE-SS---CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT--
T ss_pred CceeeccceehhheeccCceEEEEE-ec-cC-CCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCC-
Confidence 4567889999999876544332222 21 00 0112334666666 33 334999999998773 46789999
Q ss_pred CCCCCCeEEEEeCC-cceeeccCCCCCCCCCCHHHHHHHHHH
Q 020623 200 KKSKLPKMVVWDGN-ENYLTVIGSESIDEEDQGSQISRFLEG 240 (323)
Q Consensus 200 ~~~~~P~ivI~~~~-~kY~~~~~~~~~~~~~t~~~I~~Fi~~ 240 (323)
+..++|.+.+...+ ..+...+. +++++.++|++|+..
T Consensus 80 ~ke~fPv~~LF~~~~~~pv~~p~----~~~~t~~~l~~fvk~ 117 (126)
T PF07912_consen 80 DKEDFPVIYLFVGDKEEPVRYPF----DGDVTADNLQRFVKS 117 (126)
T ss_dssp SCCC-SEEEEEESSTTSEEEE-T----CS-S-HHHHHHHHHH
T ss_pred CcccCCEEEEecCCCCCCccCCc----cCCccHHHHHHHHHh
Confidence 77889999987753 23322221 457999999999975
|
The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B. |
| >TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.085 Score=51.91 Aligned_cols=104 Identities=10% Similarity=0.104 Sum_probs=73.7
Q ss_pred CCeeecChhhHHHhhc---CCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC--eEEEEEcCcchh-hHh-hhcCCcCC
Q 020623 129 PLSVPINQDTLNLLKD---DKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE--LVFCYVGIKQFA-DFA-DTFEANKK 201 (323)
Q Consensus 129 Plv~~~t~~~~~~~~~---~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~--l~F~~vd~~~~~-~~~-~~~gl~~~ 201 (323)
+.|.++|.+|++.+.. .++++++.|... --..-+.+...|.++|+++++ +.|+.+|++... .++ +.|++
T Consensus 351 ~~Vv~L~~~nf~~~v~~~~~~k~VLV~FyAp-WC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I--- 426 (463)
T TIGR00424 351 NNVVSLSRPGIENLLKLEERKEAWLVVLYAP-WCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQL--- 426 (463)
T ss_pred CCeEECCHHHHHHHHhhhcCCCeEEEEEECC-CChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCC---
Confidence 5788999999998764 456777777653 123346677889999999875 889999887543 343 67899
Q ss_pred CCCCeEEEEeCCc-ceeeccCCCCCCCCCCHHHHHHHHHHH
Q 020623 202 SKLPKMVVWDGNE-NYLTVIGSESIDEEDQGSQISRFLEGY 241 (323)
Q Consensus 202 ~~~P~ivI~~~~~-kY~~~~~~~~~~~~~t~~~I~~Fi~~~ 241 (323)
..+|.++++..++ +-..++ .+.-+.++|..||+.+
T Consensus 427 ~~~PTii~Fk~g~~~~~~Y~-----~g~R~~e~L~~Fv~~~ 462 (463)
T TIGR00424 427 GSFPTILFFPKHSSRPIKYP-----SEKRDVDSLMSFVNLL 462 (463)
T ss_pred CccceEEEEECCCCCceeCC-----CCCCCHHHHHHHHHhh
Confidence 5899999987643 111111 1346889999999864
|
This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis. |
| >cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.13 Score=39.58 Aligned_cols=73 Identities=15% Similarity=0.228 Sum_probs=50.9
Q ss_pred hhhHHHhhcC--CCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCCeEEEEEcCcchh---hHhhhcCCcCCCCCCeEEEE
Q 020623 136 QDTLNLLKDD--KRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFA---DFADTFEANKKSKLPKMVVW 210 (323)
Q Consensus 136 ~~~~~~~~~~--~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~l~F~~vd~~~~~---~~~~~~gl~~~~~~P~ivI~ 210 (323)
.+.+...+.. ++++++-|... .-..-+.+...|.++|++++++.|+.+|.+... .+++.+++ ...|.+++.
T Consensus 3 ~~~~~~~i~~~~~k~vvv~F~a~-wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~~~~l~~~~~V---~~~Pt~~~~ 78 (103)
T cd02985 3 VEELDEALKKAKGRLVVLEFALK-HSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDSTMELCRREKI---IEVPHFLFY 78 (103)
T ss_pred HHHHHHHHHHcCCCEEEEEEECC-CCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChHHHHHHHHcCC---CcCCEEEEE
Confidence 3455554432 56777777653 122345677899999999966999999987553 67888999 579998887
Q ss_pred eC
Q 020623 211 DG 212 (323)
Q Consensus 211 ~~ 212 (323)
..
T Consensus 79 ~~ 80 (103)
T cd02985 79 KD 80 (103)
T ss_pred eC
Confidence 53
|
CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form. |
| >PLN02309 5'-adenylylsulfate reductase | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.092 Score=51.63 Aligned_cols=104 Identities=11% Similarity=0.155 Sum_probs=73.4
Q ss_pred CCeeecChhhHHHhhc---CCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC--eEEEEEcCc-chhhHhh-hcCCcCC
Q 020623 129 PLSVPINQDTLNLLKD---DKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE--LVFCYVGIK-QFADFAD-TFEANKK 201 (323)
Q Consensus 129 Plv~~~t~~~~~~~~~---~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~--l~F~~vd~~-~~~~~~~-~~gl~~~ 201 (323)
+.|.+++.+++..+.. .++++++.|+.. --..-+.+...+.++|+++.+ +.|+.+|++ ....++. .|++
T Consensus 345 ~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyAp-WC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I--- 420 (457)
T PLN02309 345 QNVVALSRAGIENLLKLENRKEPWLVVLYAP-WCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQL--- 420 (457)
T ss_pred CCcEECCHHHHHHHHHhhcCCCeEEEEEECC-CChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCC---
Confidence 3678889999988753 456777777653 123346777889999999874 999999998 5555664 6899
Q ss_pred CCCCeEEEEeCCc-ceeeccCCCCCCCCCCHHHHHHHHHHH
Q 020623 202 SKLPKMVVWDGNE-NYLTVIGSESIDEEDQGSQISRFLEGY 241 (323)
Q Consensus 202 ~~~P~ivI~~~~~-kY~~~~~~~~~~~~~t~~~I~~Fi~~~ 241 (323)
..+|.++++..+. +...+. .+.-+.++|..||+.+
T Consensus 421 ~~~PTil~f~~g~~~~v~Y~-----~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 421 GSFPTILLFPKNSSRPIKYP-----SEKRDVDSLLSFVNSL 456 (457)
T ss_pred ceeeEEEEEeCCCCCeeecC-----CCCcCHHHHHHHHHHh
Confidence 5899999987643 211111 1245789999999875
|
|
| >TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.84 Score=46.20 Aligned_cols=160 Identities=17% Similarity=0.190 Sum_probs=101.2
Q ss_pred HHHHHhhcCceeEEeec-ccchhhHhhcCCCCCCeEEEecC-CCCCCccccCCCCHHHHHHHHH---hhcCCCeeecChh
Q 020623 63 SNLALKYKKKAWFAVAK-DFSEDTMVLYDFDKVPALVALQP-SYNEHNIFYGPFDEEFLEEFIK---QNFLPLSVPINQD 137 (323)
Q Consensus 63 ~~~A~~~~~~~~F~~~~-~~~~~~~~~~~~~~~p~ivv~k~-~~~~~~~y~g~~~~~~L~~fI~---~~~~Plv~~~t~~ 137 (323)
+++| .+.+.+.+...+ ..+.+++.+|++...|++++++. ..+....|+|-=.-.++..||. .-+-| =..++.+
T Consensus 389 ~e~~-~~s~~i~~~~~~~~~~~~~~~~~~v~~~P~~~i~~~~~~~~~i~f~g~P~G~Ef~s~i~~i~~~~~~-~~~l~~~ 466 (555)
T TIGR03143 389 GEFA-SLSEKLNSEAVNRGEEPESETLPKITKLPTVALLDDDGNYTGLKFHGVPSGHELNSFILALYNAAGP-GQPLGEE 466 (555)
T ss_pred HHHH-hcCCcEEEEEeccccchhhHhhcCCCcCCEEEEEeCCCcccceEEEecCccHhHHHHHHHHHHhcCC-CCCCCHH
Confidence 4555 345556554332 23566778899888899999853 2223467876222333444443 22322 3366888
Q ss_pred hHHHhhcCCCcEE-EEEEeCCChhHHHHHHHHHHHHHHhCCCeEEEEEcCcchhhHhhhcCCcCCCCCCeEEEEeCCcce
Q 020623 138 TLNLLKDDKRKIV-LAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENY 216 (323)
Q Consensus 138 ~~~~~~~~~~~~v-~~f~~~~~~e~~~~~~~~l~~~A~~~~~l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI~~~~~kY 216 (323)
....+..-++|+- -+|+.. +=..=++..+.++++|..++++..-++|...++.+++.+++ ...|+++|.+ ++.
T Consensus 467 ~~~~i~~~~~~~~i~v~~~~-~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~v---~~vP~~~i~~--~~~ 540 (555)
T TIGR03143 467 LLEKIKKITKPVNIKIGVSL-SCTLCPDVVLAAQRIASLNPNVEAEMIDVSHFPDLKDEYGI---MSVPAIVVDD--QQV 540 (555)
T ss_pred HHHHHHhcCCCeEEEEEECC-CCCCcHHHHHHHHHHHHhCCCceEEEEECcccHHHHHhCCc---eecCEEEECC--EEE
Confidence 8887776666763 344432 11122567788899999998899999999999999999998 6789998743 122
Q ss_pred eeccCCCCCCCCCCHHHHHHHH
Q 020623 217 LTVIGSESIDEEDQGSQISRFL 238 (323)
Q Consensus 217 ~~~~~~~~~~~~~t~~~I~~Fi 238 (323)
. .+..+.+.|.+++
T Consensus 541 -~-------~G~~~~~~~~~~~ 554 (555)
T TIGR03143 541 -Y-------FGKKTIEEMLELI 554 (555)
T ss_pred -E-------eeCCCHHHHHHhh
Confidence 2 1234667777665
|
This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140). |
| >cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.058 Score=42.35 Aligned_cols=92 Identities=23% Similarity=0.237 Sum_probs=60.1
Q ss_pred ceecCChHHHHHHHHhcCCcccEEEEecC-C-------hhHHHHHHHhhcCceeEEeecccchhhHhhcCCCCCCeEEEe
Q 020623 29 VSILNSDAEVSDFVENAGTFFPLFIGFGL-D-------ESVMSNLALKYKKKAWFAVAKDFSEDTMVLYDFDKVPALVAL 100 (323)
Q Consensus 29 v~~i~s~~~l~~fl~~~~~~~~~vVgf~~-~-------~~~f~~~A~~~~~~~~F~~~~~~~~~~~~~~~~~~~p~ivv~ 100 (323)
+..|++ +++.+.+.+.+...+++|-|.. . .+.+.++|.++. .+.|..++....+++.++++...|++++|
T Consensus 6 v~~i~~-~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~-~v~f~~vd~~~~~l~~~~~i~~~Pt~~~f 83 (113)
T cd02957 6 VREISS-KEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYP-ETKFVKINAEKAFLVNYLDIKVLPTLLVY 83 (113)
T ss_pred EEEEcH-HHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCC-CcEEEEEEchhhHHHHhcCCCcCCEEEEE
Confidence 567876 8888887765200156777654 2 247888999886 45666553221277889999899999999
Q ss_pred cCCCCCCccc------cC-CCCHHHHHHHH
Q 020623 101 QPSYNEHNIF------YG-PFDEEFLEEFI 123 (323)
Q Consensus 101 k~~~~~~~~y------~g-~~~~~~L~~fI 123 (323)
+++.. ...+ .| +++.+.|++|+
T Consensus 84 ~~G~~-v~~~~G~~~~~~~~~~~~~l~~~l 112 (113)
T cd02957 84 KNGEL-IDNIVGFEELGGDDFTTEDLEKFL 112 (113)
T ss_pred ECCEE-EEEEecHHHhCCCCCCHHHHHHHh
Confidence 97421 1112 22 46788898886
|
Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te |
| >KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.14 Score=49.27 Aligned_cols=125 Identities=19% Similarity=0.268 Sum_probs=84.8
Q ss_pred cccccCCCCChHHHHHHHHHhcCCCceecC-------ChHHHHHHHHhcCCcccEEEEec-CC-------hhHHHHHHHh
Q 020623 4 IPTEYYGPRKAELLVRYLKKFVAPDVSILN-------SDAEVSDFVENAGTFFPLFIGFG-LD-------ESVMSNLALK 68 (323)
Q Consensus 4 ~~~eY~G~R~a~~Iv~~l~k~~~p~v~~i~-------s~~~l~~fl~~~~~~~~~vVgf~-~~-------~~~f~~~A~~ 68 (323)
.+.+|.|.|+++.+..|+.+.+.+.+..+. ....+..+....+. ..+|-|+ +. ...+.++|..
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~--~~lv~f~aPwc~~ck~l~~~~~~~a~~ 190 (383)
T KOG0191|consen 113 KPIDYSGPRNAESLAEFLIKELEPSVKKLVEGEVFELTKDNFDETVKDSDA--DWLVEFYAPWCGHCKKLAPEWEKLAKL 190 (383)
T ss_pred ceeeccCcccHHHHHHHHHHhhccccccccCCceEEccccchhhhhhccCc--ceEEEEeccccHHhhhcChHHHHHHHH
Confidence 578999999999999999999877754332 22444444444332 3566554 32 2578888887
Q ss_pred hc--CceeEEeecc-cchhhHhhcCCCCCCeEEEecCCCCCCccccCCCCHHHHHHHHHhhcCCC
Q 020623 69 YK--KKAWFAVAKD-FSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQNFLPL 130 (323)
Q Consensus 69 ~~--~~~~F~~~~~-~~~~~~~~~~~~~~p~ivv~k~~~~~~~~y~g~~~~~~L~~fI~~~~~Pl 130 (323)
+. ..+..+..+. ....++..+++...|++++|++.......|.|..+.+.|..|+.+..-+.
T Consensus 191 ~~~~~~v~~~~~d~~~~~~~~~~~~v~~~Pt~~~f~~~~~~~~~~~~~R~~~~i~~~v~~~~~~~ 255 (383)
T KOG0191|consen 191 LKSKENVELGKIDATVHKSLASRLEVRGYPTLKLFPPGEEDIYYYSGLRDSDSIVSFVEKKERRN 255 (383)
T ss_pred hccCcceEEEeeccchHHHHhhhhcccCCceEEEecCCCcccccccccccHHHHHHHHHhhcCCC
Confidence 75 3344544321 23456778888889999999874331334457889999999999988773
|
|
| >cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.12 Score=39.72 Aligned_cols=85 Identities=13% Similarity=0.165 Sum_probs=58.6
Q ss_pred HHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcC---ceeEEeecc-cchhhHhhcCCCCCCeEEEecCC
Q 020623 36 AEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKK---KAWFAVAKD-FSEDTMVLYDFDKVPALVALQPS 103 (323)
Q Consensus 36 ~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~---~~~F~~~~~-~~~~~~~~~~~~~~p~ivv~k~~ 103 (323)
+++++.. .++ +++|.|..+ ...+.+++..+++ .+.++..+. ..++++.++++...|++++|+.
T Consensus 7 ~~~~~~~-~~~---~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~~- 81 (104)
T cd03000 7 DSFKDVR-KED---IWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLLKG- 81 (104)
T ss_pred hhhhhhc-cCC---eEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEEcC-
Confidence 5666643 344 467777542 2478888888753 255554432 3467788999999999999964
Q ss_pred CCCCccccCCCCHHHHHHHHHhh
Q 020623 104 YNEHNIFYGPFDEEFLEEFIKQN 126 (323)
Q Consensus 104 ~~~~~~y~g~~~~~~L~~fI~~~ 126 (323)
+....|.|..+.+.|.+|++..
T Consensus 82 -~~~~~~~G~~~~~~l~~~~~~~ 103 (104)
T cd03000 82 -DLAYNYRGPRTKDDIVEFANRV 103 (104)
T ss_pred -CCceeecCCCCHHHHHHHHHhh
Confidence 3445578989999999999863
|
The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase. |
| >cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.084 Score=41.33 Aligned_cols=89 Identities=15% Similarity=0.216 Sum_probs=59.5
Q ss_pred ChHHHHH-HHHh-cCCcccEEEEecCC--------hhHHHHHHHhhcC-ceeEEeecc-cchhhHhhcCCCCCCeEEEec
Q 020623 34 SDAEVSD-FVEN-AGTFFPLFIGFGLD--------ESVMSNLALKYKK-KAWFAVAKD-FSEDTMVLYDFDKVPALVALQ 101 (323)
Q Consensus 34 s~~~l~~-fl~~-~~~~~~~vVgf~~~--------~~~f~~~A~~~~~-~~~F~~~~~-~~~~~~~~~~~~~~p~ivv~k 101 (323)
+.+.+++ .+.. .+. +++|-|... ...+.++++++.+ .+.|+.++. .+.+++.++++.+.|++++|+
T Consensus 10 ~~~~~~~~~~~~~~~~--~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i~~ 87 (111)
T cd02963 10 TFSQYENEIVPKSFKK--PYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGAHSVPAIVGII 87 (111)
T ss_pred eHHHHHHhhccccCCC--eEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCCccCCEEEEEE
Confidence 4555654 3432 332 677777542 2478889998865 366665532 356788899999999999997
Q ss_pred CCCCCCccccCCCCHHHHHHHHHh
Q 020623 102 PSYNEHNIFYGPFDEEFLEEFIKQ 125 (323)
Q Consensus 102 ~~~~~~~~y~g~~~~~~L~~fI~~ 125 (323)
.+ .....+.|..+.+.|.+||.+
T Consensus 88 ~g-~~~~~~~G~~~~~~l~~~i~~ 110 (111)
T cd02963 88 NG-QVTFYHDSSFTKQHVVDFVRK 110 (111)
T ss_pred CC-EEEEEecCCCCHHHHHHHHhc
Confidence 53 222234688889999999975
|
DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network. |
| >PTZ00051 thioredoxin; Provisional | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.1 Score=39.39 Aligned_cols=87 Identities=15% Similarity=0.231 Sum_probs=57.2
Q ss_pred CceecCChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeecc-cchhhHhhcCCCCCCeEE
Q 020623 28 DVSILNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAKD-FSEDTMVLYDFDKVPALV 98 (323)
Q Consensus 28 ~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~~-~~~~~~~~~~~~~~p~iv 98 (323)
++..++|.++++++++.+. +++|-|..+ .+.+.+++.++. ++.|...+. ...+++.++++.+.|+++
T Consensus 1 ~v~~i~~~~~~~~~~~~~~---~vli~f~~~~C~~C~~~~~~l~~l~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~Pt~~ 76 (98)
T PTZ00051 1 MVHIVTSQAEFESTLSQNE---LVIVDFYAEWCGPCKRIAPFYEECSKEYT-KMVFVKVDVDELSEVAEKENITSMPTFK 76 (98)
T ss_pred CeEEecCHHHHHHHHhcCC---eEEEEEECCCCHHHHHHhHHHHHHHHHcC-CcEEEEEECcchHHHHHHCCCceeeEEE
Confidence 4678899999999988776 466766542 236777887765 355554432 345678899998999999
Q ss_pred EecCCCCCCccccCCCCHHHHH
Q 020623 99 ALQPSYNEHNIFYGPFDEEFLE 120 (323)
Q Consensus 99 v~k~~~~~~~~y~g~~~~~~L~ 120 (323)
+|+++ .....+.|. ..++|.
T Consensus 77 ~~~~g-~~~~~~~G~-~~~~~~ 96 (98)
T PTZ00051 77 VFKNG-SVVDTLLGA-NDEALK 96 (98)
T ss_pred EEeCC-eEEEEEeCC-CHHHhh
Confidence 99752 222234564 444443
|
|
| >cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.11 Score=40.86 Aligned_cols=94 Identities=14% Similarity=0.091 Sum_probs=59.9
Q ss_pred ceecCChHHHHHHHHhcCCcccEEEEecCCh------hHHHHHHHh---hcCceeEEeecccc-hhhHhhcCCCC--CCe
Q 020623 29 VSILNSDAEVSDFVENAGTFFPLFIGFGLDE------SVMSNLALK---YKKKAWFAVAKDFS-EDTMVLYDFDK--VPA 96 (323)
Q Consensus 29 v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~~------~~f~~~A~~---~~~~~~F~~~~~~~-~~~~~~~~~~~--~p~ 96 (323)
|++++ .+..+.+.+..- +..+-|+..+ +.|.++|++ ++..+.|..++... ..++..+|++. .|.
T Consensus 1 ~~e~t-~e~~~~~~~~~~---~~~~l~f~~~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~~~~~~~fgl~~~~~P~ 76 (111)
T cd03072 1 VREIT-FENAEELTEEGL---PFLILFHDKDDLESLKEFKQAVARQLISEKGAINFLTADGDKFRHPLLHLGKTPADLPV 76 (111)
T ss_pred Ccccc-cccHHHHhcCCC---CeEEEEecchHHHHHHHHHHHHHHHHHhcCceEEEEEEechHhhhHHHHcCCCHhHCCE
Confidence 34553 355556555443 3333333321 367899999 99999998875321 23667788864 688
Q ss_pred EEEecCCCCCCcc-ccCCCCHHHHHHHHHhh
Q 020623 97 LVALQPSYNEHNI-FYGPFDEEFLEEFIKQN 126 (323)
Q Consensus 97 ivv~k~~~~~~~~-y~g~~~~~~L~~fI~~~ 126 (323)
+++.......++. +.+.++.+.|++|+++.
T Consensus 77 i~i~~~~~~~Ky~~~~~~~t~~~i~~Fv~~~ 107 (111)
T cd03072 77 IAIDSFRHMYLFPDFEDVYVPGKLKQFVLDL 107 (111)
T ss_pred EEEEcchhcCcCCCCccccCHHHHHHHHHHH
Confidence 8887652213555 56889999999999864
|
It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site. |
| >cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.12 Score=39.22 Aligned_cols=85 Identities=7% Similarity=0.103 Sum_probs=56.6
Q ss_pred HHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeecc-cchhhHhhcCCCCCCeEEEecCCCCCC
Q 020623 37 EVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAKD-FSEDTMVLYDFDKVPALVALQPSYNEH 107 (323)
Q Consensus 37 ~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~~-~~~~~~~~~~~~~~p~ivv~k~~~~~~ 107 (323)
+++..+.+++. ++++-|... ...+.++++++.+.+.|...+. ..++++.++++.+.|++++|+++ +..
T Consensus 4 ~~~~~~~~~~~--~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g-~~v 80 (97)
T cd02949 4 ALRKLYHESDR--LILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDK-ELV 80 (97)
T ss_pred hHHHHHHhCCC--eEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCeeccEEEEEECC-eEE
Confidence 45555555443 466666532 2466788888876666665532 35678889999889999999742 222
Q ss_pred ccccCCCCHHHHHHHHH
Q 020623 108 NIFYGPFDEEFLEEFIK 124 (323)
Q Consensus 108 ~~y~g~~~~~~L~~fI~ 124 (323)
..+.|..+.+.|.+||+
T Consensus 81 ~~~~g~~~~~~~~~~l~ 97 (97)
T cd02949 81 KEISGVKMKSEYREFIE 97 (97)
T ss_pred EEEeCCccHHHHHHhhC
Confidence 34567778888999874
|
The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress. |
| >cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.18 Score=37.84 Aligned_cols=86 Identities=16% Similarity=0.194 Sum_probs=56.1
Q ss_pred ChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeecc-cchhhHhhcCCCCCCeEEEecCCC
Q 020623 34 SDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAKD-FSEDTMVLYDFDKVPALVALQPSY 104 (323)
Q Consensus 34 s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~~-~~~~~~~~~~~~~~p~ivv~k~~~ 104 (323)
|.+++++.+.++.. .+++|-|... .+.+.+++.++...+.|..++. ...+++.++++...|++++|++
T Consensus 1 s~~~~~~~~~~~~~-~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~-- 77 (97)
T cd02984 1 SEEEFEELLKSDAS-KLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEITAVPTFVFFRN-- 77 (97)
T ss_pred CHHHHHHHHhhCCC-CEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCCccccEEEEEEC--
Confidence 46788888887721 1466666532 2467788888655666655532 3556788999999999999975
Q ss_pred CCCc-cccCCCCHHHHHHHH
Q 020623 105 NEHN-IFYGPFDEEFLEEFI 123 (323)
Q Consensus 105 ~~~~-~y~g~~~~~~L~~fI 123 (323)
++.. .+.| ...+.|.++|
T Consensus 78 g~~~~~~~g-~~~~~l~~~~ 96 (97)
T cd02984 78 GTIVDRVSG-ADPKELAKKV 96 (97)
T ss_pred CEEEEEEeC-CCHHHHHHhh
Confidence 2222 2335 3567788776
|
PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. |
| >cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.17 Score=40.13 Aligned_cols=68 Identities=19% Similarity=0.247 Sum_probs=49.9
Q ss_pred ChHHHHHHHHh-cCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeec-ccchhhHhhcCCCCCCeEEEecCC
Q 020623 34 SDAEVSDFVEN-AGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAK-DFSEDTMVLYDFDKVPALVALQPS 103 (323)
Q Consensus 34 s~~~l~~fl~~-~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~-~~~~~~~~~~~~~~~p~ivv~k~~ 103 (323)
+.+++++.+.. ++. +++|-|... .+.+.++|.++.+.+.|..++ +..++++.++++...|++++||++
T Consensus 1 ~~~~~~~~i~~~~~~--~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G 78 (114)
T cd02954 1 SGWAVDQAILSEEEK--VVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRN 78 (114)
T ss_pred CHHHHHHHHhccCCC--EEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHcCCCCCCEEEEEECC
Confidence 35677777764 232 577877642 357899999998776666553 346788999999999999999964
|
It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing. |
| >cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.22 Score=42.51 Aligned_cols=98 Identities=21% Similarity=0.222 Sum_probs=64.5
Q ss_pred CceecCChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeecccchhhHhhcCCCCCCeEEE
Q 020623 28 DVSILNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAKDFSEDTMVLYDFDKVPALVA 99 (323)
Q Consensus 28 ~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~~~~~~~~~~~~~~~~p~ivv 99 (323)
.+..|++.+++.+.+...+...+++|-|..+ .+.+.++|.+|. .+.|..++....+++.++++...|++++
T Consensus 63 ~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~-~vkF~kVd~d~~~l~~~f~v~~vPTlll 141 (175)
T cd02987 63 KVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYP-AVKFCKIRASATGASDEFDTDALPALLV 141 (175)
T ss_pred eEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCC-CeEEEEEeccchhhHHhCCCCCCCEEEE
Confidence 3678877688888776543111466666542 247889999886 5677665322225788899988999999
Q ss_pred ecCCCCC-Cc-ccc----CCCCHHHHHHHHHhh
Q 020623 100 LQPSYNE-HN-IFY----GPFDEEFLEEFIKQN 126 (323)
Q Consensus 100 ~k~~~~~-~~-~y~----g~~~~~~L~~fI~~~ 126 (323)
|+++..- .. -+. .+|+.+.|+.|+.++
T Consensus 142 yk~G~~v~~~vG~~~~~g~~f~~~~le~~L~~~ 174 (175)
T cd02987 142 YKGGELIGNFVRVTEDLGEDFDAEDLESFLVEY 174 (175)
T ss_pred EECCEEEEEEechHHhcCCCCCHHHHHHHHHhc
Confidence 9974211 11 111 368889999998764
|
It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain. |
| >cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.23 Score=40.86 Aligned_cols=89 Identities=19% Similarity=0.203 Sum_probs=57.2
Q ss_pred HHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeecc-c--chhhHhhcCCCCCCeEEEecCCC
Q 020623 36 AEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAKD-F--SEDTMVLYDFDKVPALVALQPSY 104 (323)
Q Consensus 36 ~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~~-~--~~~~~~~~~~~~~p~ivv~k~~~ 104 (323)
.+++..+..+. +++|-|... ...+.+++.++.+.+.|..++- . ..+++.+|++...|++++|.+.-
T Consensus 11 ~~~~~a~~~gk---~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G 87 (142)
T cd02950 11 TPPEVALSNGK---PTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREG 87 (142)
T ss_pred CCHHHHHhCCC---EEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCC
Confidence 34555555555 567777542 2467888888876665654421 1 13567889999999999996421
Q ss_pred CCCccccCCCCHHHHHHHHHhhc
Q 020623 105 NEHNIFYGPFDEEFLEEFIKQNF 127 (323)
Q Consensus 105 ~~~~~y~g~~~~~~L~~fI~~~~ 127 (323)
.....+.|..+.+.|.++|....
T Consensus 88 ~~v~~~~G~~~~~~l~~~l~~l~ 110 (142)
T cd02950 88 NEEGQSIGLQPKQVLAQNLDALV 110 (142)
T ss_pred CEEEEEeCCCCHHHHHHHHHHHH
Confidence 12224558777888888887644
|
It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport. |
| >TIGR02187 GlrX_arch Glutaredoxin-like domain protein | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.53 Score=41.43 Aligned_cols=116 Identities=20% Similarity=0.171 Sum_probs=71.9
Q ss_pred CCcc--cccCCCCChHHHHHHHHHhcC--CCceecCChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhh
Q 020623 2 HGIP--TEYYGPRKAELLVRYLKKFVA--PDVSILNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKY 69 (323)
Q Consensus 2 ~G~~--~eY~G~R~a~~Iv~~l~k~~~--p~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~ 69 (323)
+|.. ..|.|....+.+.+|+....+ +....+ +.+..+.+.+.+.. +.++.|... ...+.+++...
T Consensus 86 ~g~~~~~~~~G~~~~~~l~~~i~~~~~~~~~~~~L-~~~~~~~l~~~~~p--v~I~~F~a~~C~~C~~~~~~l~~l~~~~ 162 (215)
T TIGR02187 86 EGKDGGIRYTGIPAGYEFAALIEDIVRVSQGEPGL-SEKTVELLQSLDEP--VRIEVFVTPTCPYCPYAVLMAHKFALAN 162 (215)
T ss_pred CCeeeEEEEeecCCHHHHHHHHHHHHHhcCCCCCC-CHHHHHHHHhcCCC--cEEEEEECCCCCCcHHHHHHHHHHHHhc
Confidence 4544 368899999999999988742 223445 33334444333331 233435432 13455666553
Q ss_pred cCceeEEeec-ccchhhHhhcCCCCCCeEEEecCCCCCCccccCCCCHHHHHHHHHh
Q 020623 70 KKKAWFAVAK-DFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQ 125 (323)
Q Consensus 70 ~~~~~F~~~~-~~~~~~~~~~~~~~~p~ivv~k~~~~~~~~y~g~~~~~~L~~fI~~ 125 (323)
+++.|...+ +..++++.++++...|++++++.. . .+.|....+.|.+||..
T Consensus 163 -~~i~~~~vD~~~~~~~~~~~~V~~vPtl~i~~~~--~--~~~G~~~~~~l~~~l~~ 214 (215)
T TIGR02187 163 -DKILGEMIEANENPDLAEKYGVMSVPKIVINKGV--E--EFVGAYPEEQFLEYILS 214 (215)
T ss_pred -CceEEEEEeCCCCHHHHHHhCCccCCEEEEecCC--E--EEECCCCHHHHHHHHHh
Confidence 345554442 246778889999889999998642 2 16787788899999874
|
This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different. |
| >cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.49 Score=37.18 Aligned_cols=89 Identities=18% Similarity=0.132 Sum_probs=58.6
Q ss_pred CceecCChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcC---ceeEEeecc---cchhhHhhcCCCC
Q 020623 28 DVSILNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKK---KAWFAVAKD---FSEDTMVLYDFDK 93 (323)
Q Consensus 28 ~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~---~~~F~~~~~---~~~~~~~~~~~~~ 93 (323)
++..+ +.+.+++.+.+++. +++|-|... .+.|.++|.++++ .+.|+..+. ...+++.++++..
T Consensus 2 ~v~~l-~~~~f~~~i~~~~~--~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~ 78 (114)
T cd02992 2 PVIVL-DAASFNSALLGSPS--AWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTG 78 (114)
T ss_pred CeEEC-CHHhHHHHHhcCCC--eEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCC
Confidence 46677 56889998877763 577777542 2478889988754 356665531 2346778899988
Q ss_pred CCeEEEecCCCCCC---ccccCC-CCHHHH
Q 020623 94 VPALVALQPSYNEH---NIFYGP-FDEEFL 119 (323)
Q Consensus 94 ~p~ivv~k~~~~~~---~~y~g~-~~~~~L 119 (323)
.|++++|++...+. ..|+|+ ...+.+
T Consensus 79 ~Pt~~lf~~~~~~~~~~~~~~~~~~~~~~~ 108 (114)
T cd02992 79 YPTLRYFPPFSKEATDGLKQEGPERDVNEL 108 (114)
T ss_pred CCEEEEECCCCccCCCCCcccCCccCHHHH
Confidence 99999998753221 356666 344443
|
QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen. |
| >PHA02278 thioredoxin-like protein | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.59 Score=36.22 Aligned_cols=91 Identities=11% Similarity=0.157 Sum_probs=58.5
Q ss_pred hhHHHhhcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC-eEEEEEcCcch----hhHhhhcCCcCCCCCCeEEEEe
Q 020623 137 DTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQF----ADFADTFEANKKSKLPKMVVWD 211 (323)
Q Consensus 137 ~~~~~~~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~-l~F~~vd~~~~----~~~~~~~gl~~~~~~P~ivI~~ 211 (323)
..+..+...++++++-|... -=..-+.+...|.++|+++.+ +.|+.+|.+.. +.+++.|++ ...|.+++..
T Consensus 5 ~~~~~~i~~~~~vvV~F~A~-WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I---~~iPT~i~fk 80 (103)
T PHA02278 5 VDLNTAIRQKKDVIVMITQD-NCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDI---MSTPVLIGYK 80 (103)
T ss_pred HHHHHHHhCCCcEEEEEECC-CCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCC---ccccEEEEEE
Confidence 45566656667777766652 112335566788888887544 77888888754 467888999 5899999987
Q ss_pred CCcceeeccCCCCCCCCCCHHHHHHH
Q 020623 212 GNENYLTVIGSESIDEEDQGSQISRF 237 (323)
Q Consensus 212 ~~~kY~~~~~~~~~~~~~t~~~I~~F 237 (323)
..+.-... .+..+.+.|.++
T Consensus 81 ~G~~v~~~------~G~~~~~~l~~~ 100 (103)
T PHA02278 81 DGQLVKKY------EDQVTPMQLQEL 100 (103)
T ss_pred CCEEEEEE------eCCCCHHHHHhh
Confidence 64322222 223566666654
|
|
| >cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.19 Score=36.51 Aligned_cols=83 Identities=22% Similarity=0.338 Sum_probs=54.0
Q ss_pred HHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeecc-cchhhHhhcCCCCCCeEEEecCCCCCC
Q 020623 37 EVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAKD-FSEDTMVLYDFDKVPALVALQPSYNEH 107 (323)
Q Consensus 37 ~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~~-~~~~~~~~~~~~~~p~ivv~k~~~~~~ 107 (323)
+++..++... +++|-|... ...+.+++.+ ...+.|...+. ...+++..+++.+.|++++|+.+ ...
T Consensus 2 ~~~~~~~~~~---~~ll~~~~~~C~~C~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g-~~~ 76 (93)
T cd02947 2 EFEELIKSAK---PVVVDFWAPWCGPCKAIAPVLEELAEE-YPKVKFVKVDVDENPELAEEYGVRSIPTFLFFKNG-KEV 76 (93)
T ss_pred chHHHHhcCC---cEEEEEECCCChhHHHhhHHHHHHHHH-CCCceEEEEECCCChhHHHhcCcccccEEEEEECC-EEE
Confidence 4555666654 456655432 2366677766 44566665532 24678888999889999999763 223
Q ss_pred ccccCCCCHHHHHHHHH
Q 020623 108 NIFYGPFDEEFLEEFIK 124 (323)
Q Consensus 108 ~~y~g~~~~~~L~~fI~ 124 (323)
..+.|..+.+.|.+||.
T Consensus 77 ~~~~g~~~~~~l~~~i~ 93 (93)
T cd02947 77 DRVVGADPKEELEEFLE 93 (93)
T ss_pred EEEecCCCHHHHHHHhC
Confidence 34567777789999873
|
Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio |
| >cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.49 Score=35.56 Aligned_cols=86 Identities=21% Similarity=0.297 Sum_probs=54.0
Q ss_pred hHHHhhcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC-eEEEEEcCcchhhHhhhcCCcCCCCCCeEEEEeC-Ccc
Q 020623 138 TLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDG-NEN 215 (323)
Q Consensus 138 ~~~~~~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~-l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI~~~-~~k 215 (323)
.+..+.....+.++.|... .+ ......++++|..+|+ +.|+++... .++..+++ ..|.++++.+ ...
T Consensus 9 ~l~~~~~~~~~~vvg~f~~--~~--~~~~~~f~~~A~~~r~~~~F~~~~~~---~~~~~~~~----~~~~i~l~~~~~~~ 77 (97)
T cd02981 9 ELEKFLDKDDVVVVGFFKD--EE--SEEYKTFEKVAESLRDDYGFGHTSDK---EVAKKLKV----KPGSVVLFKPFEEE 77 (97)
T ss_pred HHHHHhccCCeEEEEEECC--CC--cHHHHHHHHHHHhcccCCeEEEEChH---HHHHHcCC----CCCceEEeCCcccC
Confidence 3455555556667777653 22 2456789999999997 999988743 34444555 2467777754 221
Q ss_pred eeeccCCCCCCCCCCHHHHHHHHHH
Q 020623 216 YLTVIGSESIDEEDQGSQISRFLEG 240 (323)
Q Consensus 216 Y~~~~~~~~~~~~~t~~~I~~Fi~~ 240 (323)
.... ++..+.+.|.+||..
T Consensus 78 ~~~y------~g~~~~~~l~~fi~~ 96 (97)
T cd02981 78 PVEY------DGEFTEESLVEFIKD 96 (97)
T ss_pred CccC------CCCCCHHHHHHHHHh
Confidence 1111 334678999999874
|
Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai |
| >PLN00410 U5 snRNP protein, DIM1 family; Provisional | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.37 Score=39.72 Aligned_cols=73 Identities=18% Similarity=0.209 Sum_probs=52.7
Q ss_pred ceecCChHHHHHHHHhc-CCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeec-ccchhhHhhcCCCCCCeEE
Q 020623 29 VSILNSDAEVSDFVENA-GTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAK-DFSEDTMVLYDFDKVPALV 98 (323)
Q Consensus 29 v~~i~s~~~l~~fl~~~-~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~-~~~~~~~~~~~~~~~p~iv 98 (323)
+..|.|.+++++.+... +. +++|-|+.+ .+.+.++|.++.+.+.|..++ +-.++++..|++...|+++
T Consensus 5 l~~l~s~~e~d~~I~~~~~~--lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y~I~~~~t~~ 82 (142)
T PLN00410 5 LPHLHSGWAVDQAILAEEER--LVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPCTVM 82 (142)
T ss_pred HhhhCCHHHHHHHHHhcCCC--EEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHcCccCCCcEE
Confidence 45678999999887633 32 578888653 358899999998777776653 2356889999997566666
Q ss_pred -EecCC
Q 020623 99 -ALQPS 103 (323)
Q Consensus 99 -v~k~~ 103 (323)
+||++
T Consensus 83 ~ffk~g 88 (142)
T PLN00410 83 FFFRNK 88 (142)
T ss_pred EEEECC
Confidence 88863
|
|
| >cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.39 Score=37.77 Aligned_cols=81 Identities=10% Similarity=0.073 Sum_probs=57.4
Q ss_pred CeeecChhhHHHhhcC-CCcEEEEEEeCCChhHHHHHHHHHHHHHHhCC---C-eEEEEEcCcc--hhhHhhhcCCcCCC
Q 020623 130 LSVPINQDTLNLLKDD-KRKIVLAIVEDETEEKSQKLVTTLKAAASANR---E-LVFCYVGIKQ--FADFADTFEANKKS 202 (323)
Q Consensus 130 lv~~~t~~~~~~~~~~-~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~---~-l~F~~vd~~~--~~~~~~~~gl~~~~ 202 (323)
.+.+++..++...... ++++++.|... .-..-..+...++++|++++ + +.|+.+|+.. .+.+++.|++ .
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~vvV~f~a~-wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i---~ 77 (114)
T cd02992 2 PVIVLDAASFNSALLGSPSAWLVEFYAS-WCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGV---T 77 (114)
T ss_pred CeEECCHHhHHHHHhcCCCeEEEEEECC-CCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCC---C
Confidence 4678899999887544 45666666653 12234566778888888754 4 8888898753 4567888999 5
Q ss_pred CCCeEEEEeCCc
Q 020623 203 KLPKMVVWDGNE 214 (323)
Q Consensus 203 ~~P~ivI~~~~~ 214 (323)
.+|.++++....
T Consensus 78 ~~Pt~~lf~~~~ 89 (114)
T cd02992 78 GYPTLRYFPPFS 89 (114)
T ss_pred CCCEEEEECCCC
Confidence 789999987643
|
QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen. |
| >cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.18 Score=39.72 Aligned_cols=65 Identities=22% Similarity=0.310 Sum_probs=47.6
Q ss_pred HHHHHHHhhc-CceeEEeeccc-chhhHhhcCCC--C--CCeEEEecCCCCCCccccCCC-CHHHHHHHHHhh
Q 020623 61 VMSNLALKYK-KKAWFAVAKDF-SEDTMVLYDFD--K--VPALVALQPSYNEHNIFYGPF-DEEFLEEFIKQN 126 (323)
Q Consensus 61 ~f~~~A~~~~-~~~~F~~~~~~-~~~~~~~~~~~--~--~p~ivv~k~~~~~~~~y~g~~-~~~~L~~fI~~~ 126 (323)
.|.++|++++ ..+.|+.++.. ...++..+|++ + .|++++... .+.++...+++ +.+.|.+|+++.
T Consensus 39 ~~~~vAk~fk~gki~Fv~~D~~~~~~~l~~fgl~~~~~~~P~~~i~~~-~~~KY~~~~~~~t~e~i~~F~~~f 110 (111)
T cd03073 39 RVLKVAKDFPDRKLNFAVADKEDFSHELEEFGLDFSGGEKPVVAIRTA-KGKKYVMEEEFSDVDALEEFLEDF 110 (111)
T ss_pred HHHHHHHHCcCCeEEEEEEcHHHHHHHHHHcCCCcccCCCCEEEEEeC-CCCccCCCcccCCHHHHHHHHHHh
Confidence 6789999999 69999887432 12356677876 3 798888764 23455556788 999999999763
|
They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei |
| >cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.59 Score=37.06 Aligned_cols=95 Identities=16% Similarity=0.199 Sum_probs=58.3
Q ss_pred hhcCC-CcEEEEEEeCCChhHHHHHHHHH---HHHHHhCCC-eEEEEEcCcch-------------hhHhhhcCCcCCCC
Q 020623 142 LKDDK-RKIVLAIVEDETEEKSQKLVTTL---KAAASANRE-LVFCYVGIKQF-------------ADFADTFEANKKSK 203 (323)
Q Consensus 142 ~~~~~-~~~v~~f~~~~~~e~~~~~~~~l---~~~A~~~~~-l~F~~vd~~~~-------------~~~~~~~gl~~~~~ 203 (323)
....+ +|+++.|... .=..-+.+...+ ..+++.+++ +.++.+|.+.. ..+...|++ ..
T Consensus 9 a~~~~~k~vlv~f~a~-wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v---~~ 84 (125)
T cd02951 9 AAADGKKPLLLLFSQP-GCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRV---RF 84 (125)
T ss_pred HHHcCCCcEEEEEeCC-CCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCC---cc
Confidence 34456 7887777652 111123333322 234444444 77888887642 356778888 57
Q ss_pred CCeEEEEeCC-cceeeccCCCCCCCCCCHHHHHHHHHHHHcCc
Q 020623 204 LPKMVVWDGN-ENYLTVIGSESIDEEDQGSQISRFLEGYREGR 245 (323)
Q Consensus 204 ~P~ivI~~~~-~kY~~~~~~~~~~~~~t~~~I~~Fi~~~~~Gk 245 (323)
.|.+++++.+ ++-... +.+..+.+.+.+++++++++.
T Consensus 85 ~Pt~~~~~~~gg~~~~~-----~~G~~~~~~~~~~l~~~~~~~ 122 (125)
T cd02951 85 TPTVIFLDPEGGKEIAR-----LPGYLPPDEFLAYLEYVQEKA 122 (125)
T ss_pred ccEEEEEcCCCCceeEE-----ecCCCCHHHHHHHHHHHHhhh
Confidence 8999999987 543221 123467889999999998764
|
Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation. |
| >TIGR00411 redox_disulf_1 small redox-active disulfide protein 1 | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.28 Score=35.47 Aligned_cols=67 Identities=7% Similarity=0.107 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHhCCC-eEEEEEcCcchhhHhhhcCCcCCCCCCeEEEEeCCcceeeccCCCCCCCCCCHHHHHHHHHH
Q 020623 162 SQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEG 240 (323)
Q Consensus 162 ~~~~~~~l~~~A~~~~~-l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~~ 240 (323)
-+.+...|.++|+.++. +.+..+|.++.+...+.+|+ ...|.+++ + ++... .+..+.+.|.++++.
T Consensus 14 C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v---~~vPt~~~-~--g~~~~-------~G~~~~~~l~~~l~~ 80 (82)
T TIGR00411 14 CPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAMEYGI---MAVPAIVI-N--GDVEF-------IGAPTKEELVEAIKK 80 (82)
T ss_pred hHHHHHHHHHHHHHhcCceEEEEEeCccCHHHHHHcCC---ccCCEEEE-C--CEEEE-------ecCCCHHHHHHHHHh
Confidence 35667788899988876 99999999877777888999 46899876 3 33222 123567888888876
Q ss_pred H
Q 020623 241 Y 241 (323)
Q Consensus 241 ~ 241 (323)
.
T Consensus 81 ~ 81 (82)
T TIGR00411 81 R 81 (82)
T ss_pred h
Confidence 4
|
This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin. |
| >cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif | Back alignment and domain information |
|---|
Probab=94.44 E-value=0.51 Score=36.25 Aligned_cols=87 Identities=15% Similarity=0.130 Sum_probs=56.3
Q ss_pred ChHHHHHHHHhc-CCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeecc-cc---hhhHhhcCCCCCCeEEEe
Q 020623 34 SDAEVSDFVENA-GTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAKD-FS---EDTMVLYDFDKVPALVAL 100 (323)
Q Consensus 34 s~~~l~~fl~~~-~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~~-~~---~~~~~~~~~~~~p~ivv~ 100 (323)
|.+++++.+.+. +. +++|-|... .+.+.++|..+ ..+.|...+. .+ .+++.++++...|++++|
T Consensus 2 ~~~~~~~~i~~~~~k--~vvv~F~a~wC~~C~~~~p~l~~la~~~-~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~ 78 (103)
T cd02985 2 SVEELDEALKKAKGR--LVVLEFALKHSGPSVKIYPTMVKLSRTC-NDVVFLLVNGDENDSTMELCRREKIIEVPHFLFY 78 (103)
T ss_pred CHHHHHHHHHHcCCC--EEEEEEECCCCHhHHHHhHHHHHHHHHC-CCCEEEEEECCCChHHHHHHHHcCCCcCCEEEEE
Confidence 567888888764 22 577777542 24788889888 4566655432 12 267889999999999999
Q ss_pred cCCCCCCccccCCCCHHHHHHHHHh
Q 020623 101 QPSYNEHNIFYGPFDEEFLEEFIKQ 125 (323)
Q Consensus 101 k~~~~~~~~y~g~~~~~~L~~fI~~ 125 (323)
+++ +....+.|. ....|..-|..
T Consensus 79 ~~G-~~v~~~~G~-~~~~l~~~~~~ 101 (103)
T cd02985 79 KDG-EKIHEEEGI-GPDELIGDVLY 101 (103)
T ss_pred eCC-eEEEEEeCC-CHHHHHHHHHh
Confidence 753 222345564 45666665543
|
CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form. |
| >PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.4 Score=43.78 Aligned_cols=113 Identities=15% Similarity=0.269 Sum_probs=62.6
Q ss_pred cCCCeeecCh-hhHHHhhcC-C--CcEEEEEEeCCChhHHHHHHHHHHHHHHhCCCeEEEEEcCcchhhHhhhcCCcCCC
Q 020623 127 FLPLSVPINQ-DTLNLLKDD-K--RKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKS 202 (323)
Q Consensus 127 ~~Plv~~~t~-~~~~~~~~~-~--~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~l~F~~vd~~~~~~~~~~~gl~~~~ 202 (323)
++.-|.+++. +.+-..... + ..+|+.|+.. +...-..+-..|..+|++|+.+.|+-+.+..-+ +...|.. .
T Consensus 123 ~fG~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~-~~~~C~~mn~~L~~LA~kyp~vKFvkI~a~~~~-~~~~f~~---~ 197 (265)
T PF02114_consen 123 RFGEVYEIDSGEEFLDAIEKESKSTWVVVHIYEP-GFPRCEIMNSCLECLARKYPEVKFVKIRASKCP-ASENFPD---K 197 (265)
T ss_dssp ---SEEE--SHHHHHHHCCTSSTT-EEEEEEE-T-TSCCHHHHHHHHHHHHHH-TTSEEEEEEECGCC-TTTTS-T---T
T ss_pred cCceEEEccChhhHHHHHhccCCCcEEEEEEEeC-CCchHHHHHHHHHHHHHhCCceEEEEEehhccC-cccCCcc---c
Confidence 3566777753 556555432 2 2344555543 334456677899999999999999988875432 4556655 6
Q ss_pred CCCeEEEEeCCc---ceeeccCCCCCCCCCCHHHHHHHHHHHHcCcccc
Q 020623 203 KLPKMVVWDGNE---NYLTVIGSESIDEEDQGSQISRFLEGYREGRTEQ 248 (323)
Q Consensus 203 ~~P~ivI~~~~~---kY~~~~~~~~~~~~~t~~~I~~Fi~~~~~Gkl~~ 248 (323)
.+|+|++..... .+--.. ..+..+++.+.|..|+..+ |-|+-
T Consensus 198 ~LPtllvYk~G~l~~~~V~l~--~~~g~df~~~dlE~~L~~~--G~l~~ 242 (265)
T PF02114_consen 198 NLPTLLVYKNGDLIGNFVGLT--DLLGDDFFTEDLEAFLIEY--GVLPE 242 (265)
T ss_dssp C-SEEEEEETTEEEEEECTGG--GCT-TT--HHHHHHHHHTT--TSSS-
T ss_pred CCCEEEEEECCEEEEeEEehH--HhcCCCCCHHHHHHHHHHc--CCCCC
Confidence 899999887532 222111 1124568999999999854 54443
|
Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B. |
| >cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle | Back alignment and domain information |
|---|
Probab=94.23 E-value=0.69 Score=35.54 Aligned_cols=90 Identities=12% Similarity=0.187 Sum_probs=56.4
Q ss_pred ChhhHHHhhc-CCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC-eEEEEEcCcchhhHhhhcCCcCCCCCCeEEEEeC
Q 020623 135 NQDTLNLLKD-DKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDG 212 (323)
Q Consensus 135 t~~~~~~~~~-~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~-l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI~~~ 212 (323)
+.+.+..+.. .....++.|... .+ ....+.|.++|..+|+ +.|.+.... .+...+++ ..|.++++..
T Consensus 7 ~~~~~e~~~~~~~~~~Vvg~f~~--~~--~~~~~~F~~vA~~~R~d~~F~~~~~~---~~~~~~~~----~~~~i~l~~~ 75 (102)
T cd03066 7 SERELQAFENIEDDIKLIGYFKS--ED--SEHYKAFEEAAEEFHPYIKFFATFDS---KVAKKLGL----KMNEVDFYEP 75 (102)
T ss_pred CHHHHHHHhcccCCeEEEEEECC--CC--CHHHHHHHHHHHhhhcCCEEEEECcH---HHHHHcCC----CCCcEEEeCC
Confidence 4455677776 444555556542 12 2345789999999987 999776543 33455566 3578888754
Q ss_pred -Cccee-eccCCCCCCCCCCHHHHHHHHHHH
Q 020623 213 -NENYL-TVIGSESIDEEDQGSQISRFLEGY 241 (323)
Q Consensus 213 -~~kY~-~~~~~~~~~~~~t~~~I~~Fi~~~ 241 (323)
..... +. ++.++.+.|.+||+.-
T Consensus 76 ~~e~~~~y~------~g~~~~~~l~~fi~~~ 100 (102)
T cd03066 76 FMEEPVTIP------DKPYSEEELVDFVEEH 100 (102)
T ss_pred CCCCCcccC------CCCCCHHHHHHHHHHh
Confidence 32211 21 2357889999999754
|
It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca |
| >PTZ00062 glutaredoxin; Provisional | Back alignment and domain information |
|---|
Probab=94.01 E-value=2.4 Score=37.17 Aligned_cols=160 Identities=17% Similarity=0.140 Sum_probs=88.6
Q ss_pred cCChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeecccchhhHhhcCCCCCCeEEEecCC
Q 020623 32 LNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAKDFSEDTMVLYDFDKVPALVALQPS 103 (323)
Q Consensus 32 i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~~~~~~~~~~~~~~~~p~ivv~k~~ 103 (323)
..+.+++.++++.+.- .+++.|... .+.+.++|+++. .+.|..++ .+ +++...|++++|+++
T Consensus 3 ~~~~ee~~~~i~~~~g--~~vl~f~a~w~~~C~~m~~vl~~l~~~~~-~~~F~~V~---~d----~~V~~vPtfv~~~~g 72 (204)
T PTZ00062 3 FIKKEEKDKLIESNTG--KLVLYVKSSKEPEYEQLMDVCNALVEDFP-SLEFYVVN---LA----DANNEYGVFEFYQNS 72 (204)
T ss_pred CCCHHHHHHHHhcCCC--cEEEEEeCCCCcchHHHHHHHHHHHHHCC-CcEEEEEc---cc----cCcccceEEEEEECC
Confidence 4578899998886522 355656332 247788898885 57787762 23 788889999999863
Q ss_pred CCCCccccCCCCHHHHHHHHHhhcCCCeeecChhhHHHhhcCCCcEEEEEEeCC-C-h--hHHHHHHHHHHHHHHhCCCe
Q 020623 104 YNEHNIFYGPFDEEFLEEFIKQNFLPLSVPINQDTLNLLKDDKRKIVLAIVEDE-T-E--EKSQKLVTTLKAAASANREL 179 (323)
Q Consensus 104 ~~~~~~y~g~~~~~~L~~fI~~~~~Plv~~~t~~~~~~~~~~~~~~v~~f~~~~-~-~--e~~~~~~~~l~~~A~~~~~l 179 (323)
. .-..+.|. +...|..+++.+.-+.-..-..+....+.++ .|+++ |.... + + .-..+.++.|++ + ++
T Consensus 73 ~-~i~r~~G~-~~~~~~~~~~~~~~~~~~~~~~~~v~~li~~-~~Vvv-f~Kg~~~~p~C~~C~~~k~~L~~----~-~i 143 (204)
T PTZ00062 73 Q-LINSLEGC-NTSTLVSFIRGWAQKGSSEDTVEKIERLIRN-HKILL-FMKGSKTFPFCRFSNAVVNMLNS----S-GV 143 (204)
T ss_pred E-EEeeeeCC-CHHHHHHHHHHHcCCCCHHHHHHHHHHHHhc-CCEEE-EEccCCCCCCChhHHHHHHHHHH----c-CC
Confidence 1 12234554 5777888888776653332222334444433 56654 54421 0 0 112334444443 2 36
Q ss_pred EEEEEcCcchhhHhhhcC-CcCCCCCCeEEEE
Q 020623 180 VFCYVGIKQFADFADTFE-ANKKSKLPKMVVW 210 (323)
Q Consensus 180 ~F~~vd~~~~~~~~~~~g-l~~~~~~P~ivI~ 210 (323)
.|...|..+-....+.+. ++.....|+|.|.
T Consensus 144 ~y~~~DI~~d~~~~~~l~~~sg~~TvPqVfI~ 175 (204)
T PTZ00062 144 KYETYNIFEDPDLREELKVYSNWPTYPQLYVN 175 (204)
T ss_pred CEEEEEcCCCHHHHHHHHHHhCCCCCCeEEEC
Confidence 666777753333222221 1111468998763
|
|
| >cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds | Back alignment and domain information |
|---|
Probab=93.79 E-value=0.68 Score=35.76 Aligned_cols=91 Identities=21% Similarity=0.320 Sum_probs=55.5
Q ss_pred hhhHHHhhcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC-eEEEEEcCcchhhHhhhcCCcCCCCCCeEEEEeCC-
Q 020623 136 QDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGN- 213 (323)
Q Consensus 136 ~~~~~~~~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~-l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI~~~~- 213 (323)
.+.+..+.......++.|.... + ....+.+.++|..+|+ +.|.++... .++..+++ .|.++++.+.
T Consensus 8 ~~~l~~f~~~~~~~Vvg~f~~~--~--~~~~~~F~~vA~~~R~d~~F~~~~~~---~~~~~~~~-----~~~ivl~~p~~ 75 (104)
T cd03069 8 EAEFEKFLSDDDASVVGFFEDE--D--SKLLSEFLKAADTLRESFRFAHTSDK---QLLEKYGY-----GEGVVLFRPPR 75 (104)
T ss_pred HHHHHHHhccCCcEEEEEEcCC--C--chHHHHHHHHHHhhhhcCEEEEEChH---HHHHhcCC-----CCceEEEechh
Confidence 4456666655555666666531 1 2455788999999987 999887654 33444544 4567787542
Q ss_pred --cceeeccCCCCCCCCCCHHHHHHHHHH
Q 020623 214 --ENYLTVIGSESIDEEDQGSQISRFLEG 240 (323)
Q Consensus 214 --~kY~~~~~~~~~~~~~t~~~I~~Fi~~ 240 (323)
.+|. ++....+++++.+.|.+||+.
T Consensus 76 ~~~k~d--e~~~~y~g~~~~~~l~~fi~~ 102 (104)
T cd03069 76 LSNKFE--DSSVKFDGDLDSSKIKKFIRE 102 (104)
T ss_pred hhcccC--cccccccCcCCHHHHHHHHHh
Confidence 1221 111112445788999999975
|
It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates. |
| >PLN00410 U5 snRNP protein, DIM1 family; Provisional | Back alignment and domain information |
|---|
Probab=93.75 E-value=1.5 Score=36.05 Aligned_cols=72 Identities=17% Similarity=0.236 Sum_probs=48.9
Q ss_pred hhHHHhhc--CCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC-eEEEEEcCcchhhHhhhcCCcCCCCCCeEE-EEeC
Q 020623 137 DTLNLLKD--DKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMV-VWDG 212 (323)
Q Consensus 137 ~~~~~~~~--~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~-l~F~~vd~~~~~~~~~~~gl~~~~~~P~iv-I~~~ 212 (323)
+.+..... .++++++-|...- -..-..+-..|.++|+++++ ..|+.+|.++.+.+++.|++ . ..|.++ +...
T Consensus 12 ~e~d~~I~~~~~~lVVvdF~A~W-CgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y~I-~--~~~t~~~ffk~ 87 (142)
T PLN00410 12 WAVDQAILAEEERLVVIRFGHDW-DETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYEL-Y--DPCTVMFFFRN 87 (142)
T ss_pred HHHHHHHHhcCCCEEEEEEECCC-ChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHcCc-c--CCCcEEEEEEC
Confidence 44444332 3466666666521 12234566799999999999 88899999999999999999 3 344444 5554
|
|
| >KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.21 E-value=0.76 Score=35.88 Aligned_cols=73 Identities=19% Similarity=0.283 Sum_probs=50.9
Q ss_pred cEEEEecCC--------hhHHHHHHHhhcCceeEEeeccc--chhhHhhcCCCCCCeEEEecCCCCCCccccCCCCHHHH
Q 020623 50 PLFIGFGLD--------ESVMSNLALKYKKKAWFAVAKDF--SEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFL 119 (323)
Q Consensus 50 ~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~~~--~~~~~~~~~~~~~p~ivv~k~~~~~~~~y~g~~~~~~L 119 (323)
+++|-|+.. .+.|.++|.+|.+ +.|..++ . ..+++..+++...|++++||.+ ++..-+-|. +.+.|
T Consensus 23 liVvdF~a~wCgPCk~i~P~~~~La~~y~~-v~Flkvd-vde~~~~~~~~~V~~~PTf~f~k~g-~~~~~~vGa-~~~~l 98 (106)
T KOG0907|consen 23 LVVVDFYATWCGPCKAIAPKFEKLAEKYPD-VVFLKVD-VDELEEVAKEFNVKAMPTFVFYKGG-EEVDEVVGA-NKAEL 98 (106)
T ss_pred eEEEEEECCCCcchhhhhhHHHHHHHHCCC-CEEEEEe-cccCHhHHHhcCceEeeEEEEEECC-EEEEEEecC-CHHHH
Confidence 567777542 4689999999997 7776552 2 4778889999889999999873 333334454 44577
Q ss_pred HHHHHhh
Q 020623 120 EEFIKQN 126 (323)
Q Consensus 120 ~~fI~~~ 126 (323)
++.|..+
T Consensus 99 ~~~i~~~ 105 (106)
T KOG0907|consen 99 EKKIAKH 105 (106)
T ss_pred HHHHHhc
Confidence 7777654
|
|
| >cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1 | Back alignment and domain information |
|---|
Probab=92.87 E-value=1.2 Score=35.50 Aligned_cols=93 Identities=18% Similarity=0.297 Sum_probs=58.7
Q ss_pred hhHHHhhcC--CCcEEEEEEeCCCh------hHHHHHHHHHHHHHHhCCC-eEEEEEcCcch-------hhHhhhcCCcC
Q 020623 137 DTLNLLKDD--KRKIVLAIVEDETE------EKSQKLVTTLKAAASANRE-LVFCYVGIKQF-------ADFADTFEANK 200 (323)
Q Consensus 137 ~~~~~~~~~--~~~~v~~f~~~~~~------e~~~~~~~~l~~~A~~~~~-l~F~~vd~~~~-------~~~~~~~gl~~ 200 (323)
+++...... ++|+++.|....+. ..=..+...|++++.++++ +.|+.+|.++. ..+...+++ .
T Consensus 10 ~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I-~ 88 (119)
T cd02952 10 EEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKL-T 88 (119)
T ss_pred HHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCc-c
Confidence 344444433 57887777762221 1113455789999999995 99999998653 356677888 4
Q ss_pred CCCCCeEEEEeCCcceeeccCCCCCCCCCCHHHHHHHH
Q 020623 201 KSKLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFL 238 (323)
Q Consensus 201 ~~~~P~ivI~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi 238 (323)
..+|.+++++..++-- + ++=++...++.|+
T Consensus 89 -~~iPT~~~~~~~~~l~---~----~~c~~~~~~~~~~ 118 (119)
T cd02952 89 -TGVPTLLRWKTPQRLV---E----DECLQADLVEMFF 118 (119)
T ss_pred -cCCCEEEEEcCCceec---c----hhhcCHHHHHHhh
Confidence 5899999996543321 1 1225667777775
|
TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases. |
| >PTZ00062 glutaredoxin; Provisional | Back alignment and domain information |
|---|
Probab=92.78 E-value=1.7 Score=38.03 Aligned_cols=66 Identities=15% Similarity=0.214 Sum_probs=46.4
Q ss_pred hhhHHHhhcCC-CcEEEEEEeCCChhHHHHHHHHHHHHHHhCCCeEEEEEcCcchhhHhhhcCCcCCCCCCeEEEEeCC
Q 020623 136 QDTLNLLKDDK-RKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGN 213 (323)
Q Consensus 136 ~~~~~~~~~~~-~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI~~~~ 213 (323)
.+.+..+..++ ...++.|... --+.-+++...|.++|++|+++.|+.+|.+ +++ ...|.+++....
T Consensus 6 ~ee~~~~i~~~~g~~vl~f~a~-w~~~C~~m~~vl~~l~~~~~~~~F~~V~~d--------~~V---~~vPtfv~~~~g 72 (204)
T PTZ00062 6 KEEKDKLIESNTGKLVLYVKSS-KEPEYEQLMDVCNALVEDFPSLEFYVVNLA--------DAN---NEYGVFEFYQNS 72 (204)
T ss_pred HHHHHHHHhcCCCcEEEEEeCC-CCcchHHHHHHHHHHHHHCCCcEEEEEccc--------cCc---ccceEEEEEECC
Confidence 34444554433 3455555442 234567888999999999999999999976 777 578999987754
|
|
| >cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds | Back alignment and domain information |
|---|
Probab=92.76 E-value=0.97 Score=35.23 Aligned_cols=93 Identities=15% Similarity=0.255 Sum_probs=53.9
Q ss_pred ChhhHHHhhcCC-CcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC-eEEEEEcCcchhhHhhhcCCcCCCCCCeEEEEeC
Q 020623 135 NQDTLNLLKDDK-RKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDG 212 (323)
Q Consensus 135 t~~~~~~~~~~~-~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~-l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI~~~ 212 (323)
+.+.+..+.... ...++.|.... + ....+.+.++|..+|+ +.|.++... .++..+++ ..|.++++.+
T Consensus 7 s~~ele~f~~~~~~~~VVG~F~~~--~--~~~~~~F~~vA~~~Rdd~~F~~t~~~---~~~~~~~~----~~~~vvl~rp 75 (107)
T cd03068 7 TLKQVQEFLRDGDDVIIIGVFSGE--E--DPAYQLYQDAANSLREDYKFHHTFDS---EIFKSLKV----SPGQLVVFQP 75 (107)
T ss_pred CHHHHHHHHhcCCCEEEEEEECCC--C--CHHHHHHHHHHHhcccCCEEEEEChH---HHHHhcCC----CCCceEEECc
Confidence 345566665544 45556665421 1 2345678999999998 999887654 34455676 2466888866
Q ss_pred C---cceeeccCCCCCCCC-CCH-HHHHHHHHH
Q 020623 213 N---ENYLTVIGSESIDEE-DQG-SQISRFLEG 240 (323)
Q Consensus 213 ~---~kY~~~~~~~~~~~~-~t~-~~I~~Fi~~ 240 (323)
. .||... ....++. .+. ++|.+||+.
T Consensus 76 ~~~~~k~e~~--~~~~~~~~~~~~~~~~~f~~~ 106 (107)
T cd03068 76 EKFQSKYEPK--SHVLNKKDSTSEDELKDFFKE 106 (107)
T ss_pred HHHhhhcCcc--eeeeeccccchHHHHHHHHhc
Confidence 3 244221 0001222 344 449999874
|
It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates. |
| >TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative | Back alignment and domain information |
|---|
Probab=92.52 E-value=2.6 Score=33.56 Aligned_cols=103 Identities=13% Similarity=0.097 Sum_probs=61.6
Q ss_pred CeeecChhhHHHhhcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCCeEEEEEcCcc-----------hhhHhhhcCC
Q 020623 130 LSVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQ-----------FADFADTFEA 198 (323)
Q Consensus 130 lv~~~t~~~~~~~~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~l~F~~vd~~~-----------~~~~~~~~gl 198 (323)
-+.+++.+.+.....++...++.|... .=..=+.+...|.+++++.+ +.|.++|.+. +..+.+.+++
T Consensus 7 ~~~~it~~~~~~~i~~~~~~iv~f~~~-~Cp~C~~~~P~l~~~~~~~~-~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i 84 (122)
T TIGR01295 7 GLEVTTVVRALEALDKKETATFFIGRK-TCPYCRKFSGTLSGVVAQTK-APIYYIDSENNGSFEMSSLNDLTAFRSRFGI 84 (122)
T ss_pred cceecCHHHHHHHHHcCCcEEEEEECC-CChhHHHHhHHHHHHHHhcC-CcEEEEECCCccCcCcccHHHHHHHHHHcCC
Confidence 355677777877776666655545432 22233567788999999844 5555666652 2244456665
Q ss_pred c-CCCCCCeEEEEeCCcceeeccCCCCCCCCCCHHHHHHHHH
Q 020623 199 N-KKSKLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLE 239 (323)
Q Consensus 199 ~-~~~~~P~ivI~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~ 239 (323)
. .-...|.+++....+.-....| ...+.+.|.+|+.
T Consensus 85 ~~~i~~~PT~v~~k~Gk~v~~~~G-----~~~~~~~l~~~~~ 121 (122)
T TIGR01295 85 PTSFMGTPTFVHITDGKQVSVRCG-----SSTTAQELQDIAA 121 (122)
T ss_pred cccCCCCCEEEEEeCCeEEEEEeC-----CCCCHHHHHHHhh
Confidence 2 2245899998776431111122 2357899998874
|
This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris. |
| >cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1 | Back alignment and domain information |
|---|
Probab=92.34 E-value=1.5 Score=34.63 Aligned_cols=64 Identities=16% Similarity=0.264 Sum_probs=49.0
Q ss_pred CCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC-eEEEEEcCcchhhHhhhcCCcCCCCCCeEEEEeC
Q 020623 145 DKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDG 212 (323)
Q Consensus 145 ~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~-l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI~~~ 212 (323)
.++++++=|...-. ..-..+-..|.++|+++++ +.|..+|.++.+.+.+.+++ ...|.++.+..
T Consensus 13 ~~klVVVdF~a~WC-~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y~I---~amPtfvffkn 77 (114)
T cd02986 13 AEKVLVLRFGRDED-AVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQYFDI---SYIPSTIFFFN 77 (114)
T ss_pred CCCEEEEEEeCCCC-hhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHHhcCc---eeCcEEEEEEC
Confidence 35677776765321 2234565899999999999 99999999999999999999 45798886654
|
Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. |
| >KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.12 E-value=1.5 Score=34.26 Aligned_cols=64 Identities=16% Similarity=0.363 Sum_probs=48.1
Q ss_pred CCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCCeEEEEEcCcchhhHhhhcCCcCCCCCCeEEEEeCC
Q 020623 146 KRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGN 213 (323)
Q Consensus 146 ~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI~~~~ 213 (323)
++++++-|+.. -=..-+.+...+.++|.+|+++.|+.+|.++...+++.+++ ...|.++++...
T Consensus 21 ~kliVvdF~a~-wCgPCk~i~P~~~~La~~y~~v~Flkvdvde~~~~~~~~~V---~~~PTf~f~k~g 84 (106)
T KOG0907|consen 21 DKLVVVDFYAT-WCGPCKAIAPKFEKLAEKYPDVVFLKVDVDELEEVAKEFNV---KAMPTFVFYKGG 84 (106)
T ss_pred CCeEEEEEECC-CCcchhhhhhHHHHHHHHCCCCEEEEEecccCHhHHHhcCc---eEeeEEEEEECC
Confidence 36666656541 11122456679999999999999999999987778899998 578999988764
|
|
| >KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.08 E-value=1 Score=40.46 Aligned_cols=97 Identities=22% Similarity=0.307 Sum_probs=65.7
Q ss_pred CceecCChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeecccchhhHhhcCCCCCCeEEE
Q 020623 28 DVSILNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAKDFSEDTMVLYDFDKVPALVA 99 (323)
Q Consensus 28 ~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~~~~~~~~~~~~~~~~p~ivv 99 (323)
+|++|++.++++.-+...+.. .++|-|..+ .+.|+.+|.+|..-++..+--+.-...+..+|+...|+.++
T Consensus 2 ~Vi~v~~d~df~~~ls~ag~k-~v~Vdfta~wCGPCk~IaP~Fs~lankYp~aVFlkVdVd~c~~taa~~gV~amPTFif 80 (288)
T KOG0908|consen 2 PVIVVNSDSDFQRELSAAGGK-LVVVDFTASWCGPCKRIAPIFSDLANKYPGAVFLKVDVDECRGTAATNGVNAMPTFIF 80 (288)
T ss_pred CeEEecCcHHHHHhhhccCce-EEEEEEEecccchHHhhhhHHHHhhhhCcccEEEEEeHHHhhchhhhcCcccCceEEE
Confidence 689999999999877766642 467778643 46899999999755544432111123345678888999999
Q ss_pred ecCCCCCCccccCCCCHHHHHHHHHhhc
Q 020623 100 LQPSYNEHNIFYGPFDEEFLEEFIKQNF 127 (323)
Q Consensus 100 ~k~~~~~~~~y~g~~~~~~L~~fI~~~~ 127 (323)
|+++ -....+.|. +...|+.-|.++.
T Consensus 81 f~ng-~kid~~qGA-d~~gLe~kv~~~~ 106 (288)
T KOG0908|consen 81 FRNG-VKIDQIQGA-DASGLEEKVAKYA 106 (288)
T ss_pred EecC-eEeeeecCC-CHHHHHHHHHHHh
Confidence 9973 223346665 5666777777664
|
|
| >cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation | Back alignment and domain information |
|---|
Probab=91.97 E-value=1.9 Score=34.04 Aligned_cols=88 Identities=10% Similarity=0.132 Sum_probs=54.0
Q ss_pred hHHHHHHHHhc-CCcccEEEEecCC--h------hHH---HHHHHhhcCceeEEeeccc--------------chhhHhh
Q 020623 35 DAEVSDFVENA-GTFFPLFIGFGLD--E------SVM---SNLALKYKKKAWFAVAKDF--------------SEDTMVL 88 (323)
Q Consensus 35 ~~~l~~fl~~~-~~~~~~vVgf~~~--~------~~f---~~~A~~~~~~~~F~~~~~~--------------~~~~~~~ 88 (323)
.+++++.++++ + +++|-|..+ . ..+ ..++..+.+.+.+...+-. ..+++.+
T Consensus 3 ~~~~~~a~~~~~k---~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~ 79 (125)
T cd02951 3 YEDLAEAAADGKK---PLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARK 79 (125)
T ss_pred HHHHHHHHHcCCC---cEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHH
Confidence 46777777777 5 567777543 1 112 1444555545544333211 2467788
Q ss_pred cCCCCCCeEEEecCC-CCCCccccCCCCHHHHHHHHHh
Q 020623 89 YDFDKVPALVALQPS-YNEHNIFYGPFDEEFLEEFIKQ 125 (323)
Q Consensus 89 ~~~~~~p~ivv~k~~-~~~~~~y~g~~~~~~L~~fI~~ 125 (323)
+++...|+++++.+. -+....+.|..+.+.+.++|..
T Consensus 80 ~~v~~~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~ 117 (125)
T cd02951 80 YRVRFTPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEY 117 (125)
T ss_pred cCCccccEEEEEcCCCCceeEEecCCCCHHHHHHHHHH
Confidence 999899999999873 1222345687777888888765
|
Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation. |
| >cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding | Back alignment and domain information |
|---|
Probab=91.60 E-value=2.8 Score=32.81 Aligned_cols=65 Identities=17% Similarity=0.225 Sum_probs=45.9
Q ss_pred hHHHHHHHhhcCceeEEeec-ccchhhHhhcCCCCCCeEEEecCCCC-CCccccCCCCHHHHHHHHHh
Q 020623 60 SVMSNLALKYKKKAWFAVAK-DFSEDTMVLYDFDKVPALVALQPSYN-EHNIFYGPFDEEFLEEFIKQ 125 (323)
Q Consensus 60 ~~f~~~A~~~~~~~~F~~~~-~~~~~~~~~~~~~~~p~ivv~k~~~~-~~~~y~g~~~~~~L~~fI~~ 125 (323)
..+.++|..+ +.+.|...+ +..++++.+|++...|++++|+.+.. ....|.|--...+|.+||..
T Consensus 42 ~~l~~la~~~-~~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~~~~~~~~G~~~~~el~~~i~~ 108 (113)
T cd02975 42 QLLEELSELS-DKLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGKDGGIRYYGLPAGYEFASLIED 108 (113)
T ss_pred HHHHHHHHhc-CceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCeecceEEEEecCchHHHHHHHHH
Confidence 4677788766 456565542 24677888999999999999986322 23357786677889998864
|
PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions. |
| >cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1 | Back alignment and domain information |
|---|
Probab=91.55 E-value=1.7 Score=34.44 Aligned_cols=67 Identities=18% Similarity=0.283 Sum_probs=47.7
Q ss_pred hHHHHHHHHhc-CCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeec-ccchhhHhhcCCCCCCeEEEecCC
Q 020623 35 DAEVSDFVENA-GTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAK-DFSEDTMVLYDFDKVPALVALQPS 103 (323)
Q Consensus 35 ~~~l~~fl~~~-~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~-~~~~~~~~~~~~~~~p~ivv~k~~ 103 (323)
.++++..+.+. +. +++|-|+.. ++.|.++|.++.+.+.|..++ +..++++..|++...|+.++|+++
T Consensus 2 ~~~~d~~i~~~~~k--lVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y~I~amPtfvffkng 78 (114)
T cd02986 2 KKEVDQAIKSTAEK--VLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQYFDISYIPSTIFFFNG 78 (114)
T ss_pred HHHHHHHHHhcCCC--EEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHHhcCceeCcEEEEEECC
Confidence 46677666543 32 677878653 358899999997657676653 235778899999778999999863
|
Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. |
| >cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library | Back alignment and domain information |
|---|
Probab=91.34 E-value=1.8 Score=36.07 Aligned_cols=73 Identities=14% Similarity=0.273 Sum_probs=50.7
Q ss_pred ceecCChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcC-ceeEEeec-ccchhhHhhcCCCC-----
Q 020623 29 VSILNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKK-KAWFAVAK-DFSEDTMVLYDFDK----- 93 (323)
Q Consensus 29 v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~-~~~F~~~~-~~~~~~~~~~~~~~----- 93 (323)
+..+ +.+++++.+..+... +++|-|... ...|.++|.++.+ .+.|+.++ +..++++.++++..
T Consensus 30 v~~l-~~~~f~~~l~~~~~~-~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~~~v~ 107 (152)
T cd02962 30 IKYF-TPKTLEEELERDKRV-TWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTSPLSK 107 (152)
T ss_pred cEEc-CHHHHHHHHHhcCCC-EEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceecCCcC
Confidence 5667 468898888654321 567777542 2478889988864 47776664 23567888888866
Q ss_pred -CCeEEEecCC
Q 020623 94 -VPALVALQPS 103 (323)
Q Consensus 94 -~p~ivv~k~~ 103 (323)
.|++++|+++
T Consensus 108 ~~PT~ilf~~G 118 (152)
T cd02962 108 QLPTIILFQGG 118 (152)
T ss_pred CCCEEEEEECC
Confidence 7999999863
|
It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail. |
| >cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis | Back alignment and domain information |
|---|
Probab=91.25 E-value=3.3 Score=35.88 Aligned_cols=94 Identities=19% Similarity=0.148 Sum_probs=59.0
Q ss_pred CceecCChHHHHHHH-HhcCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeecccchhhHhhcCCCCCCeEE
Q 020623 28 DVSILNSDAEVSDFV-ENAGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAKDFSEDTMVLYDFDKVPALV 98 (323)
Q Consensus 28 ~v~~i~s~~~l~~fl-~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~~~~~~~~~~~~~~~~p~iv 98 (323)
.|..|+ .+++..-+ +..... +++|-|+.. ...+.++|.+|. .+.|..++ .+....+|++...|+++
T Consensus 83 ~v~eis-~~~f~~eV~~as~~~-~VVV~Fya~wc~~C~~m~~~l~~LA~k~~-~vkFvkI~--ad~~~~~~~i~~lPTll 157 (192)
T cd02988 83 EVYEIS-KPDYVREVTEASKDT-WVVVHLYKDGIPLCRLLNQHLSELARKFP-DTKFVKII--STQCIPNYPDKNLPTIL 157 (192)
T ss_pred eEEEeC-HHHHHHHHHhcCCCC-EEEEEEECCCCchHHHHHHHHHHHHHHCC-CCEEEEEE--hHHhHhhCCCCCCCEEE
Confidence 467784 56665444 333211 466766542 357889999986 46676553 23445688888899999
Q ss_pred EecCCCCC-Cc----cccC-CCCHHHHHHHHHhh
Q 020623 99 ALQPSYNE-HN----IFYG-PFDEEFLEEFIKQN 126 (323)
Q Consensus 99 v~k~~~~~-~~----~y~g-~~~~~~L~~fI~~~ 126 (323)
+|+++..- +. .+-| .++.++|+.++.+.
T Consensus 158 iyk~G~~v~~ivG~~~~gg~~~~~~~lE~~L~~~ 191 (192)
T cd02988 158 VYRNGDIVKQFIGLLEFGGMNTTMEDLEWLLVQV 191 (192)
T ss_pred EEECCEEEEEEeCchhhCCCCCCHHHHHHHHHhc
Confidence 99974221 11 1223 58889999988753
|
It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain. |
| >cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif | Back alignment and domain information |
|---|
Probab=91.14 E-value=3.8 Score=32.84 Aligned_cols=105 Identities=13% Similarity=0.077 Sum_probs=57.5
Q ss_pred cChhhHHHhhcCCCcEEEEEEeCCChhHHHHHHH-HH--HHHHHh-CCCeEEEEEcCcchhhHhh--------hcCCcCC
Q 020623 134 INQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVT-TL--KAAASA-NRELVFCYVGIKQFADFAD--------TFEANKK 201 (323)
Q Consensus 134 ~t~~~~~~~~~~~~~~v~~f~~~~~~e~~~~~~~-~l--~~~A~~-~~~l~F~~vd~~~~~~~~~--------~~gl~~~ 201 (323)
.+.+.+......++|+++.|... -=..=..+.+ .+ .++++. ++++.++.+|.++.+.... .+|.
T Consensus 3 ~~~eal~~Ak~~~KpVll~f~a~-WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~--- 78 (124)
T cd02955 3 WGEEAFEKARREDKPIFLSIGYS-TCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQ--- 78 (124)
T ss_pred CCHHHHHHHHHcCCeEEEEEccC-CCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCC---
Confidence 34556666666778887766431 0011112211 12 134444 3358889999876543322 2465
Q ss_pred CCCCeEEEEeCCcceeeccCCCCCCCCCCHHHHHHHHHHHH
Q 020623 202 SKLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEGYR 242 (323)
Q Consensus 202 ~~~P~ivI~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~~~~ 242 (323)
...|.+++++++++-....+.....++.+...+..+++.++
T Consensus 79 ~G~Pt~vfl~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (124)
T cd02955 79 GGWPLNVFLTPDLKPFFGGTYFPPEDRYGRPGFKTVLEKIR 119 (124)
T ss_pred CCCCEEEEECCCCCEEeeeeecCCCCcCCCcCHHHHHHHHH
Confidence 57999999999753211111111134566777888887765
|
The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation. |
| >TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative | Back alignment and domain information |
|---|
Probab=90.61 E-value=3.4 Score=32.89 Aligned_cols=91 Identities=10% Similarity=0.182 Sum_probs=53.2
Q ss_pred ceecCChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeecc-----cc-----hhhHhhcC
Q 020623 29 VSILNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAKD-----FS-----EDTMVLYD 90 (323)
Q Consensus 29 v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~~-----~~-----~~~~~~~~ 90 (323)
...| +.+++.+.+++.+. .+|.|+.. .+.+.+++++.+..+.+..++. .. .++..+++
T Consensus 8 ~~~i-t~~~~~~~i~~~~~---~iv~f~~~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~ 83 (122)
T TIGR01295 8 LEVT-TVVRALEALDKKET---ATFFIGRKTCPYCRKFSGTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDLTAFRSRFG 83 (122)
T ss_pred ceec-CHHHHHHHHHcCCc---EEEEEECCCChhHHHHhHHHHHHHHhcCCcEEEEECCCccCcCcccHHHHHHHHHHcC
Confidence 3455 57888888887763 35555432 3578888887543444433321 11 12334454
Q ss_pred C----CCCCeEEEecCCCCCCccccC-CCCHHHHHHHHH
Q 020623 91 F----DKVPALVALQPSYNEHNIFYG-PFDEEFLEEFIK 124 (323)
Q Consensus 91 ~----~~~p~ivv~k~~~~~~~~y~g-~~~~~~L~~fI~ 124 (323)
+ ...|++++|+++ .......| ..+.++|++|+.
T Consensus 84 i~~~i~~~PT~v~~k~G-k~v~~~~G~~~~~~~l~~~~~ 121 (122)
T TIGR01295 84 IPTSFMGTPTFVHITDG-KQVSVRCGSSTTAQELQDIAA 121 (122)
T ss_pred CcccCCCCCEEEEEeCC-eEEEEEeCCCCCHHHHHHHhh
Confidence 3 348999999974 22223446 446889999874
|
This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris. |
| >PRK03147 thiol-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=89.91 E-value=5 Score=33.39 Aligned_cols=44 Identities=23% Similarity=0.409 Sum_probs=29.5
Q ss_pred hHhhhcCCcCCCCCCeEEEEeCCcceeeccCCCCCCCCCCHHHHHHHHHHHH
Q 020623 191 DFADTFEANKKSKLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEGYR 242 (323)
Q Consensus 191 ~~~~~~gl~~~~~~P~ivI~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~~~~ 242 (323)
...+.||+ ...|.+++++.+++-...- .+..+.+.+.++++.++
T Consensus 129 ~~~~~~~v---~~~P~~~lid~~g~i~~~~-----~g~~~~~~l~~~l~~~~ 172 (173)
T PRK03147 129 QVIDAYGV---GPLPTTFLIDKDGKVVKVI-----TGEMTEEQLEEYLEKIK 172 (173)
T ss_pred hHHHHcCC---CCcCeEEEECCCCcEEEEE-----eCCCCHHHHHHHHHHhc
Confidence 44567787 4689999999876432210 23467888999888653
|
|
| >cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO) | Back alignment and domain information |
|---|
Probab=89.88 E-value=1.2 Score=31.02 Aligned_cols=44 Identities=20% Similarity=0.376 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEcCcchhhHhhhcCCcCCCCCCeEEE
Q 020623 163 QKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVV 209 (323)
Q Consensus 163 ~~~~~~l~~~A~~~~~l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI 209 (323)
+.+...|.+++..+.++.|..+|.+..+.+.+.+|+ ...|+++|
T Consensus 15 ~~~~~~l~~l~~~~~~i~~~~id~~~~~~l~~~~~i---~~vPti~i 58 (67)
T cd02973 15 PDAVQAANRIAALNPNISAEMIDAAEFPDLADEYGV---MSVPAIVI 58 (67)
T ss_pred HHHHHHHHHHHHhCCceEEEEEEcccCHhHHHHcCC---cccCEEEE
Confidence 455667788877776799999999887778888999 46899876
|
All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri |
| >cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides | Back alignment and domain information |
|---|
Probab=89.70 E-value=2.1 Score=32.14 Aligned_cols=61 Identities=15% Similarity=0.103 Sum_probs=44.6
Q ss_pred CCCcEE-EEEEeCCChhHHHHHHHHHHHHHHhCCCeEEEEEcCcchhhHhhhcCCcCCCCCCeEEE
Q 020623 145 DKRKIV-LAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVV 209 (323)
Q Consensus 145 ~~~~~v-~~f~~~~~~e~~~~~~~~l~~~A~~~~~l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI 209 (323)
..+|+- .+|+.. .=..=+.....+.+++..+.++.|..+|.++++..++.+|+ ...|+++|
T Consensus 10 l~~pv~i~~F~~~-~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~~e~a~~~~V---~~vPt~vi 71 (89)
T cd03026 10 LNGPINFETYVSL-SCHNCPDVVQALNLMAVLNPNIEHEMIDGALFQDEVEERGI---MSVPAIFL 71 (89)
T ss_pred cCCCEEEEEEECC-CCCCcHHHHHHHHHHHHHCCCceEEEEEhHhCHHHHHHcCC---ccCCEEEE
Confidence 346763 455542 11122456677889999888899999999988888999999 57999976
|
AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain. |
| >cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related) | Back alignment and domain information |
|---|
Probab=89.52 E-value=3.3 Score=31.99 Aligned_cols=92 Identities=11% Similarity=0.167 Sum_probs=59.1
Q ss_pred eecCChHHHHHHHHhcCCcccEEEEecCCh-------hHHHHHHHhhcCceeEEeecc---cchhhHhhcCCC----CCC
Q 020623 30 SILNSDAEVSDFVENAGTFFPLFIGFGLDE-------SVMSNLALKYKKKAWFAVAKD---FSEDTMVLYDFD----KVP 95 (323)
Q Consensus 30 ~~i~s~~~l~~fl~~~~~~~~~vVgf~~~~-------~~f~~~A~~~~~~~~F~~~~~---~~~~~~~~~~~~----~~p 95 (323)
..|++..++++++..... ++|.|..+. ..|.++|...+..-..+.++. -+..++++++++ ..|
T Consensus 4 e~i~d~KdfKKLLRTr~N---VLvLy~ks~k~a~~~Lk~~~~~A~~vkG~gT~~~vdCgd~e~kKLCKKlKv~~~~kp~~ 80 (112)
T cd03067 4 EDISDHKDFKKLLRTRNN---VLVLYSKSAKSAEALLKLLSDVAQAVKGQGTIAWIDCGDSESRKLCKKLKVDPSSKPKP 80 (112)
T ss_pred ccccchHHHHHHHhhcCc---EEEEEecchhhHHHHHHHHHHHHHHhcCceeEEEEecCChHHHHHHHHHccCCCCCCCc
Confidence 457778889998887652 577775431 378899999887755555432 245678888775 233
Q ss_pred e-EEEecCCCCCCccccCCCCHHHHHHHHHh
Q 020623 96 A-LVALQPSYNEHNIFYGPFDEEFLEEFIKQ 125 (323)
Q Consensus 96 ~-ivv~k~~~~~~~~y~g~~~~~~L~~fI~~ 125 (323)
. +.-|+.+ +=+-.|+-+++...|..|+++
T Consensus 81 ~~LkHYKdG-~fHkdYdR~~t~kSmv~FlrD 110 (112)
T cd03067 81 VELKHYKDG-DFHTEYNRQLTFKSMVAFLRD 110 (112)
T ss_pred chhhcccCC-CccccccchhhHHHHHHHhhC
Confidence 2 2223321 113357777888999999875
|
PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity. |
| >PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin | Back alignment and domain information |
|---|
Probab=88.50 E-value=1.8 Score=39.49 Aligned_cols=98 Identities=18% Similarity=0.108 Sum_probs=51.5
Q ss_pred ceecCChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeecccchhhHhhcCCCCCCeEEEe
Q 020623 29 VSILNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAKDFSEDTMVLYDFDKVPALVAL 100 (323)
Q Consensus 29 v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~~~~~~~~~~~~~~~~p~ivv~ 100 (323)
|..|.+.+.+-+.+....-...+||-++.+ +..+..+|.+|. .+.|.-+......+..+|.....|+|++|
T Consensus 127 v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp-~vKFvkI~a~~~~~~~~f~~~~LPtllvY 205 (265)
T PF02114_consen 127 VYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYP-EVKFVKIRASKCPASENFPDKNLPTLLVY 205 (265)
T ss_dssp EEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-T-TSEEEEEEECGCCTTTTS-TTC-SEEEEE
T ss_pred EEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCC-ceEEEEEehhccCcccCCcccCCCEEEEE
Confidence 677877676666554432111244444432 246788999987 45554331111124556766678999999
Q ss_pred cCCCC-CCc-cc----cCCCCHHHHHHHHHhhc
Q 020623 101 QPSYN-EHN-IF----YGPFDEEFLEEFIKQNF 127 (323)
Q Consensus 101 k~~~~-~~~-~y----~g~~~~~~L~~fI~~~~ 127 (323)
+.+.- ... .+ ..+|+..+|+.|+.++.
T Consensus 206 k~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~G 238 (265)
T PF02114_consen 206 KNGDLIGNFVGLTDLLGDDFFTEDLEAFLIEYG 238 (265)
T ss_dssp ETTEEEEEECTGGGCT-TT--HHHHHHHHHTTT
T ss_pred ECCEEEEeEEehHHhcCCCCCHHHHHHHHHHcC
Confidence 97421 121 12 13688899999998775
|
Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B. |
| >KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=88.24 E-value=7 Score=36.28 Aligned_cols=124 Identities=14% Similarity=0.202 Sum_probs=75.1
Q ss_pred HHHHHHhhcCCCeeecChhhHHHhhcCC-CcEEEEEEeCC-ChhH----HHHHHHHHHHHHHhCC-------C--eEEEE
Q 020623 119 LEEFIKQNFLPLSVPINQDTLNLLKDDK-RKIVLAIVEDE-TEEK----SQKLVTTLKAAASANR-------E--LVFCY 183 (323)
Q Consensus 119 L~~fI~~~~~Plv~~~t~~~~~~~~~~~-~~~v~~f~~~~-~~e~----~~~~~~~l~~~A~~~~-------~--l~F~~ 183 (323)
+.+-+.-.+---|..++.+++.++...+ ++.-++..... .... -.+..++++-+|..++ + +-|+.
T Consensus 30 v~~L~~~ts~~~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~ 109 (331)
T KOG2603|consen 30 VVQLMSWTSESGVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCM 109 (331)
T ss_pred HHHHHhccCCCCeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEE
Confidence 4443332444567888888888876543 55532222211 1110 1234478888888754 2 78999
Q ss_pred EcCcchhhHhhhcCCcCCCCCCeEEEEeCC-cceeeccCCCCC-CCCCCHHHHHHHHHHHHcCcc
Q 020623 184 VGIKQFADFADTFEANKKSKLPKMVVWDGN-ENYLTVIGSESI-DEEDQGSQISRFLEGYREGRT 246 (323)
Q Consensus 184 vd~~~~~~~~~~~gl~~~~~~P~ivI~~~~-~kY~~~~~~~~~-~~~~t~~~I~~Fi~~~~~Gkl 246 (323)
||.++-++..+.|++ ...|.+++..|. +.-.. .+..+. +-...+++|.+|+++.-+=..
T Consensus 110 Vd~~e~p~~Fq~l~l---n~~P~l~~f~P~~~n~~~-s~~~d~~~~g~~Ae~iaqfv~~~tkv~v 170 (331)
T KOG2603|consen 110 VDYDESPQVFQQLNL---NNVPHLVLFSPAKGNKKR-SDQMDQQDLGFEAEQIAQFVADRTKVNV 170 (331)
T ss_pred EeccccHHHHHHhcc---cCCCeEEEeCCCcccccc-CccchhhhcchhHHHHHHHHHHhhhhee
Confidence 999988888999999 479999999873 21111 111111 123458999999998754333
|
|
| >cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins | Back alignment and domain information |
|---|
Probab=86.98 E-value=5.4 Score=29.77 Aligned_cols=66 Identities=12% Similarity=0.180 Sum_probs=38.7
Q ss_pred CCcEEEEEEeCCChhHHHHHHHHHHHHHHhCC--CeEEEEEcCcch-----------------------hhHhhhcCCcC
Q 020623 146 KRKIVLAIVEDETEEKSQKLVTTLKAAASANR--ELVFCYVGIKQF-----------------------ADFADTFEANK 200 (323)
Q Consensus 146 ~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~--~l~F~~vd~~~~-----------------------~~~~~~~gl~~ 200 (323)
++++++.|... .-..-+.....|.++.+++. ++.++.++.+.. ..+.+.||+
T Consensus 19 ~k~~ll~f~~~-~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 95 (116)
T cd02966 19 GKVVLVNFWAS-WCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGV-- 95 (116)
T ss_pred CCEEEEEeecc-cChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCc--
Confidence 45665555542 11223455567777777773 466665555432 334566777
Q ss_pred CCCCCeEEEEeCCcc
Q 020623 201 KSKLPKMVVWDGNEN 215 (323)
Q Consensus 201 ~~~~P~ivI~~~~~k 215 (323)
...|.++|+|++++
T Consensus 96 -~~~P~~~l~d~~g~ 109 (116)
T cd02966 96 -RGLPTTFLIDRDGR 109 (116)
T ss_pred -CccceEEEECCCCc
Confidence 36899999888763
|
TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases. |
| >PRK15317 alkyl hydroperoxide reductase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=86.47 E-value=7.3 Score=39.01 Aligned_cols=112 Identities=13% Similarity=0.124 Sum_probs=77.6
Q ss_pred CCCeEEEecCCCCCCccccCCCCHHHHHHHHHhh---cCCCeeecChhhHHHhhcCCCcE-EEEEEeCCChhHHHHHHHH
Q 020623 93 KVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQN---FLPLSVPINQDTLNLLKDDKRKI-VLAIVEDETEEKSQKLVTT 168 (323)
Q Consensus 93 ~~p~ivv~k~~~~~~~~y~g~~~~~~L~~fI~~~---~~Plv~~~t~~~~~~~~~~~~~~-v~~f~~~~~~e~~~~~~~~ 168 (323)
..|++.+.+++.+....|+|-=.-.++..||..- +-| =..++++....+..-++|+ +.+|+.. +=.--+...+.
T Consensus 60 ~~p~~~~~~~~~~~~i~f~g~P~g~Ef~s~i~~i~~~~~~-~~~l~~~~~~~i~~~~~~~~i~~fv~~-~Cp~Cp~~v~~ 137 (517)
T PRK15317 60 RKPSFSITRPGEDTGVRFAGIPMGHEFTSLVLALLQVGGH-PPKLDQEVIEQIKALDGDFHFETYVSL-SCHNCPDVVQA 137 (517)
T ss_pred CCCEEEEEcCCccceEEEEecCccHHHHHHHHHHHHhcCC-CCCCCHHHHHHHHhcCCCeEEEEEEcC-CCCCcHHHHHH
Confidence 3589988875434456787732445566665532 333 4556787777777656676 4455542 11123567788
Q ss_pred HHHHHHhCCCeEEEEEcCcchhhHhhhcCCcCCCCCCeEEE
Q 020623 169 LKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVV 209 (323)
Q Consensus 169 l~~~A~~~~~l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI 209 (323)
+.++|..++.+.+-++|...++++++.+++ ...|+++|
T Consensus 138 ~~~~a~~~~~i~~~~id~~~~~~~~~~~~v---~~VP~~~i 175 (517)
T PRK15317 138 LNLMAVLNPNITHTMIDGALFQDEVEARNI---MAVPTVFL 175 (517)
T ss_pred HHHHHHhCCCceEEEEEchhCHhHHHhcCC---cccCEEEE
Confidence 899999888899999999999999999998 58999976
|
|
| >KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion] | Back alignment and domain information |
|---|
Probab=86.37 E-value=7.7 Score=33.59 Aligned_cols=115 Identities=13% Similarity=0.155 Sum_probs=70.7
Q ss_pred HHHHHHHHhhcCCCeeecC-hhhHHHhhcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCCeEEEEEcCcchhhHhhh
Q 020623 117 EFLEEFIKQNFLPLSVPIN-QDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADT 195 (323)
Q Consensus 117 ~~L~~fI~~~~~Plv~~~t-~~~~~~~~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~l~F~~vd~~~~~~~~~~ 195 (323)
+.-++|+++ ...-+.++. ...+.........++..|+.++ --.-+-+-+.|..+|+.|-+..|+.+++..-+=+...
T Consensus 55 ~kr~~~~~~-GhG~y~ev~~Ekdf~~~~~kS~kVVcHFY~~~-f~RCKimDkhLe~LAk~h~eTrFikvnae~~PFlv~k 132 (211)
T KOG1672|consen 55 EKRKEWLSK-GHGEYEEVASEKDFFEEVKKSEKVVCHFYRPE-FFRCKIMDKHLEILAKRHVETRFIKVNAEKAPFLVTK 132 (211)
T ss_pred HHHHHHHHc-CCceEEEeccHHHHHHHhhcCceEEEEEEcCC-CcceehHHHHHHHHHHhcccceEEEEecccCceeeee
Confidence 345556554 344555555 3344444333345655566532 1111233379999999999999999999865556788
Q ss_pred cCCcCCCCCCeEEEEeCCc--ceeeccCCCCC--CCCCCHHHHHHHH
Q 020623 196 FEANKKSKLPKMVVWDGNE--NYLTVIGSESI--DEEDQGSQISRFL 238 (323)
Q Consensus 196 ~gl~~~~~~P~ivI~~~~~--kY~~~~~~~~~--~~~~t~~~I~~Fi 238 (323)
|+| .-+|+++++.... -|.. |..++ .++++.+.+..=|
T Consensus 133 L~I---kVLP~v~l~k~g~~~D~iV--GF~dLGnkDdF~te~LE~rL 174 (211)
T KOG1672|consen 133 LNI---KVLPTVALFKNGKTVDYVV--GFTDLGNKDDFTTETLENRL 174 (211)
T ss_pred eee---eEeeeEEEEEcCEEEEEEe--eHhhcCCCCcCcHHHHHHHH
Confidence 888 4789999877542 2322 54444 3567877776644
|
|
| >TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit | Back alignment and domain information |
|---|
Probab=86.21 E-value=39 Score=33.82 Aligned_cols=112 Identities=13% Similarity=0.144 Sum_probs=77.4
Q ss_pred CCCeEEEecCCCCCCccccCCCCHHHHHHHHH---hhcCCCeeecChhhHHHhhcCCCcE-EEEEEeCCChhHHHHHHHH
Q 020623 93 KVPALVALQPSYNEHNIFYGPFDEEFLEEFIK---QNFLPLSVPINQDTLNLLKDDKRKI-VLAIVEDETEEKSQKLVTT 168 (323)
Q Consensus 93 ~~p~ivv~k~~~~~~~~y~g~~~~~~L~~fI~---~~~~Plv~~~t~~~~~~~~~~~~~~-v~~f~~~~~~e~~~~~~~~ 168 (323)
..|++.+++++.+....|+|-=.-.++..||. .-+-| -..++++....+..-++|+ +.+|+.. +=.--+...+.
T Consensus 61 ~~p~~~~~~~~~~~~i~f~g~P~g~Ef~s~i~~i~~~~~~-~~~l~~~~~~~~~~~~~~~~i~~f~~~-~Cp~Cp~~v~~ 138 (515)
T TIGR03140 61 RKPSFTILRDGADTGIRFAGIPGGHEFTSLVLAILQVGGH-GPKLDEGIIDRIRRLNGPLHFETYVSL-TCQNCPDVVQA 138 (515)
T ss_pred CCCeEEEecCCcccceEEEecCCcHHHHHHHHHHHHhcCC-CCCCCHHHHHHHHhcCCCeEEEEEEeC-CCCCCHHHHHH
Confidence 46999887654344567876323334555544 33444 3677888888777656676 4455542 11122567788
Q ss_pred HHHHHHhCCCeEEEEEcCcchhhHhhhcCCcCCCCCCeEEE
Q 020623 169 LKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVV 209 (323)
Q Consensus 169 l~~~A~~~~~l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI 209 (323)
+.++|..++.+..-++|+..|+++++.+++ ...|.++|
T Consensus 139 ~~~~a~~~p~i~~~~id~~~~~~~~~~~~v---~~VP~~~i 176 (515)
T TIGR03140 139 LNQMALLNPNISHTMIDGALFQDEVEALGI---QGVPAVFL 176 (515)
T ss_pred HHHHHHhCCCceEEEEEchhCHHHHHhcCC---cccCEEEE
Confidence 899999999988999999999999999998 58999987
|
This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP. |
| >PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol | Back alignment and domain information |
|---|
Probab=85.51 E-value=3.3 Score=32.22 Aligned_cols=86 Identities=10% Similarity=0.171 Sum_probs=44.5
Q ss_pred eecCChHHHHHHHHhcCCcccEEEEecCC------h---hHHHHHHHhhcCceeEEeec-----ccchhhHhhcCCC-CC
Q 020623 30 SILNSDAEVSDFVENAGTFFPLFIGFGLD------E---SVMSNLALKYKKKAWFAVAK-----DFSEDTMVLYDFD-KV 94 (323)
Q Consensus 30 ~~i~s~~~l~~fl~~~~~~~~~vVgf~~~------~---~~f~~~A~~~~~~~~F~~~~-----~~~~~~~~~~~~~-~~ 94 (323)
..|+|.++++++++..... +++| |-.+ . ..|++.+....+.+.++..+ ..+..++.++|+. ..
T Consensus 2 ~~L~t~eql~~i~~~S~~~-~~~i-FKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeS 79 (105)
T PF11009_consen 2 KPLTTEEQLEEILEESKEK-PVLI-FKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHES 79 (105)
T ss_dssp -E--SHHHHHHHHHH---S-EEEE-EEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----S
T ss_pred CccCCHHHHHHHHHhcccC-cEEE-EEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCC
Confidence 3688999999999883321 4444 3211 1 24555555544334444331 2467788899986 47
Q ss_pred CeEEEecCCCCCCcccc---CCCCHHHHH
Q 020623 95 PALVALQPSYNEHNIFY---GPFDEEFLE 120 (323)
Q Consensus 95 p~ivv~k~~~~~~~~y~---g~~~~~~L~ 120 (323)
|.++++++ +..+|+ ...+.+.|+
T Consensus 80 PQ~ili~~---g~~v~~aSH~~It~~~lk 105 (105)
T PF11009_consen 80 PQVILIKN---GKVVWHASHWDITAEALK 105 (105)
T ss_dssp SEEEEEET---TEEEEEEEGGG-SHHHH-
T ss_pred CcEEEEEC---CEEEEECccccCCHHhcC
Confidence 99999985 455554 356666653
|
The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A. |
| >PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional | Back alignment and domain information |
|---|
Probab=84.11 E-value=12 Score=37.53 Aligned_cols=75 Identities=5% Similarity=0.009 Sum_probs=42.9
Q ss_pred hHhhhcCCcCCCCCCeEEEEeCCcceeeccCCCCCCCCCCHHHHHHHHHHHHcC---cccccccCC--CCCC---CCeeE
Q 020623 191 DFADTFEANKKSKLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEGYREG---RTEQKKVAG--PSIF---GFVNS 262 (323)
Q Consensus 191 ~~~~~~gl~~~~~~P~ivI~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~~~~~G---kl~~~~kSe--P~~~---g~v~~ 262 (323)
.+...||+ ..+|..+|++++++-...- .+..+.+.|.++|+....- .+++|.+-. +..+ +.=+.
T Consensus 130 ~lak~fgV---~giPTt~IIDkdGkIV~~~-----~G~~~~eeL~a~Ie~~~~~~~~~~~~~~~~~~q~~d~~~~~~~~~ 201 (521)
T PRK14018 130 TLAQSLNI---SVYPSWAIIGKDGDVQRIV-----KGSISEAQALALIRNPNADLGSLKHSYYKPDGQKKDSKIMNTRTI 201 (521)
T ss_pred HHHHHcCC---CCcCeEEEEcCCCeEEEEE-----eCCCCHHHHHHHHHHhhhhhHHhhhhhccccCCccccCCCCccEE
Confidence 45567777 5799999999876432110 2357889999999944421 223343222 2222 22334
Q ss_pred EeccCcceehH
Q 020623 263 LIGIRSVYIIV 273 (323)
Q Consensus 263 vVg~~~~~iv~ 273 (323)
++|--+++-+-
T Consensus 202 ~~agGCFWg~e 212 (521)
T PRK14018 202 YLAGGCFWGLE 212 (521)
T ss_pred EEecCCchhhH
Confidence 55666666665
|
|
| >cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain | Back alignment and domain information |
|---|
Probab=84.10 E-value=6.7 Score=30.90 Aligned_cols=72 Identities=14% Similarity=0.198 Sum_probs=40.0
Q ss_pred HhhcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC-eEEEEEcCcchh-hHhhhcCCcCCCCCCeEEEEeCCc
Q 020623 141 LLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFA-DFADTFEANKKSKLPKMVVWDGNE 214 (323)
Q Consensus 141 ~~~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~-l~F~~vd~~~~~-~~~~~~gl~~~~~~P~ivI~~~~~ 214 (323)
.-...++|+++.|... -=..-+.+...+.+.+..... ..|+.++.+... .....|++ .+...|.++++++++
T Consensus 14 ~A~~~~kpVlV~F~a~-WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~-~g~~vPt~~f~~~~G 87 (117)
T cd02959 14 EAKDSGKPLMLLIHKT-WCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSP-DGGYIPRILFLDPSG 87 (117)
T ss_pred HHHHcCCcEEEEEeCC-cCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhccc-CCCccceEEEECCCC
Confidence 3344567887767542 112223444555555443322 456666665433 23456777 444599999999754
|
Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney. |
| >TIGR02740 TraF-like TraF-like protein | Back alignment and domain information |
|---|
Probab=83.44 E-value=14 Score=33.84 Aligned_cols=89 Identities=9% Similarity=0.004 Sum_probs=57.9
Q ss_pred CCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC-eEEEEEcCcc---------hhhHhhhcCCcCCCCCCeEEEEeCC-c
Q 020623 146 KRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQ---------FADFADTFEANKKSKLPKMVVWDGN-E 214 (323)
Q Consensus 146 ~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~-l~F~~vd~~~---------~~~~~~~~gl~~~~~~P~ivI~~~~-~ 214 (323)
+++.++.|... .-.--......|++++++|.- +.++.+|... ....++.||+ ...|.+++++.+ +
T Consensus 166 ~k~~Lv~F~As-wCp~C~~~~P~L~~la~~yg~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV---~~vPtl~Lv~~~~~ 241 (271)
T TIGR02740 166 KKSGLFFFFKS-DCPYCHQQAPILQAFEDRYGIEVLPVSVDGGPLPGFPNARPDAGQAQQLKI---RTVPAVFLADPDPN 241 (271)
T ss_pred CCeEEEEEECC-CCccHHHHhHHHHHHHHHcCcEEEEEeCCCCccccCCcccCCHHHHHHcCC---CcCCeEEEEECCCC
Confidence 45666666542 112235666789999999873 5556666532 1245678888 579999999984 5
Q ss_pred ceeeccCCCCCCCCCCHHHHHHHHHHHHc
Q 020623 215 NYLTVIGSESIDEEDQGSQISRFLEGYRE 243 (323)
Q Consensus 215 kY~~~~~~~~~~~~~t~~~I~~Fi~~~~~ 243 (323)
+..... .+.++.+.|.+.+.....
T Consensus 242 ~v~~v~-----~G~~s~~eL~~~i~~~a~ 265 (271)
T TIGR02740 242 QFTPIG-----FGVMSADELVDRILLAAH 265 (271)
T ss_pred EEEEEE-----eCCCCHHHHHHHHHHHhc
Confidence 544321 245788889888887654
|
This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein. |
| >PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A | Back alignment and domain information |
|---|
Probab=83.31 E-value=12 Score=27.52 Aligned_cols=20 Identities=15% Similarity=0.451 Sum_probs=12.6
Q ss_pred HhhhcCCcCCCCCCeEEEEeCCc
Q 020623 192 FADTFEANKKSKLPKMVVWDGNE 214 (323)
Q Consensus 192 ~~~~~gl~~~~~~P~ivI~~~~~ 214 (323)
+.+.|++ ...|.++|+++++
T Consensus 74 l~~~~~i---~~iP~~~lld~~G 93 (95)
T PF13905_consen 74 LLKKYGI---NGIPTLVLLDPDG 93 (95)
T ss_dssp HHHHTT----TSSSEEEEEETTS
T ss_pred HHHHCCC---CcCCEEEEECCCC
Confidence 3445566 4578888888765
|
... |
| >TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit | Back alignment and domain information |
|---|
Probab=82.61 E-value=23 Score=35.83 Aligned_cols=126 Identities=15% Similarity=0.131 Sum_probs=77.6
Q ss_pred HHHhhc-CCCcEEE-EEEeCCChhHHHHHHHHHHHHHHhCCCeEEEEEcCcchhhHhhhcCCcCCCCCCeEEEEeCCc-c
Q 020623 139 LNLLKD-DKRKIVL-AIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNE-N 215 (323)
Q Consensus 139 ~~~~~~-~~~~~v~-~f~~~~~~e~~~~~~~~l~~~A~~~~~l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI~~~~~-k 215 (323)
+..++. ..+|+.+ +|++. +.+...++.+.|+++|.--..+.+...|...-....+.||+ ...|+++|.+.++ .
T Consensus 357 l~~~~~~l~~~v~l~~~~~~-~~~~~~e~~~~l~e~~~~s~~i~~~~~~~~~~~~~~~~~~v---~~~P~~~i~~~~~~~ 432 (555)
T TIGR03143 357 LVGIFGRLENPVTLLLFLDG-SNEKSAELQSFLGEFASLSEKLNSEAVNRGEEPESETLPKI---TKLPTVALLDDDGNY 432 (555)
T ss_pred HHHHHHhcCCCEEEEEEECC-CchhhHHHHHHHHHHHhcCCcEEEEEeccccchhhHhhcCC---CcCCEEEEEeCCCcc
Confidence 444443 3568754 55553 33456677788888886555577777676544567788898 4789999986432 1
Q ss_pred --eeeccCCCCCCCCCCHHHHHHHHHHHHcCcccccccCC------CCCCCC--eeEEeccCcceehHHH
Q 020623 216 --YLTVIGSESIDEEDQGSQISRFLEGYREGRTEQKKVAG------PSIFGF--VNSLIGIRSVYIIVFM 275 (323)
Q Consensus 216 --Y~~~~~~~~~~~~~t~~~I~~Fi~~~~~Gkl~~~~kSe------P~~~g~--v~~vVg~~~~~iv~~~ 275 (323)
..+. | -.....+..||..+++=.-.+.-.|+ -.+.++ ++++|+.+|.+|--..
T Consensus 433 ~~i~f~-g------~P~G~Ef~s~i~~i~~~~~~~~~l~~~~~~~i~~~~~~~~i~v~~~~~C~~Cp~~~ 495 (555)
T TIGR03143 433 TGLKFH-G------VPSGHELNSFILALYNAAGPGQPLGEELLEKIKKITKPVNIKIGVSLSCTLCPDVV 495 (555)
T ss_pred cceEEE-e------cCccHhHHHHHHHHHHhcCCCCCCCHHHHHHHHhcCCCeEEEEEECCCCCCcHHHH
Confidence 1221 2 23456788999998764433322243 233344 6677899999988433
|
This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140). |
| >TIGR00411 redox_disulf_1 small redox-active disulfide protein 1 | Back alignment and domain information |
|---|
Probab=82.44 E-value=7.1 Score=27.84 Aligned_cols=62 Identities=23% Similarity=0.197 Sum_probs=43.4
Q ss_pred hHHHHHHHhhcCceeEEeecc-cchhhHhhcCCCCCCeEEEecCCCCCCccccCCCCHHHHHHHHHhh
Q 020623 60 SVMSNLALKYKKKAWFAVAKD-FSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQN 126 (323)
Q Consensus 60 ~~f~~~A~~~~~~~~F~~~~~-~~~~~~~~~~~~~~p~ivv~k~~~~~~~~y~g~~~~~~L~~fI~~~ 126 (323)
..+.+++..+...+.+...+. .+.+++.++++...|++++ . +...+.|..+.+.|.++|...
T Consensus 19 ~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~vPt~~~--~---g~~~~~G~~~~~~l~~~l~~~ 81 (82)
T TIGR00411 19 RVVEEVAKEMGDAVEVEYINVMENPQKAMEYGIMAVPAIVI--N---GDVEFIGAPTKEELVEAIKKR 81 (82)
T ss_pred HHHHHHHHHhcCceEEEEEeCccCHHHHHHcCCccCCEEEE--C---CEEEEecCCCHHHHHHHHHhh
Confidence 466777877766666555532 3566778899888999876 2 224567877889999998753
|
This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin. |
| >PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B | Back alignment and domain information |
|---|
Probab=81.73 E-value=14 Score=26.51 Aligned_cols=63 Identities=22% Similarity=0.420 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEcCcchhhHhhhcCCcCCCCCCeEEEEeCCcceeeccCCCCCCCCCCHHHHHHHHH
Q 020623 163 QKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLE 239 (323)
Q Consensus 163 ~~~~~~l~~~A~~~~~l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~ 239 (323)
+.+.+.+++++..+. +..-..+..+++.+ ..+|+ ...|+++| | ++-.+. | ...+.+.|.+||+
T Consensus 14 ~~~~~~~~~~~~~~~-i~~ei~~~~~~~~~-~~ygv---~~vPalvI-n--g~~~~~-G-----~~p~~~el~~~l~ 76 (76)
T PF13192_consen 14 PELVQLLKEAAEELG-IEVEIIDIEDFEEI-EKYGV---MSVPALVI-N--GKVVFV-G-----RVPSKEELKELLE 76 (76)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEEETTTHHHH-HHTT----SSSSEEEE-T--TEEEEE-S-----S--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-CeEEEEEccCHHHH-HHcCC---CCCCEEEE-C--CEEEEE-e-----cCCCHHHHHHHhC
Confidence 466778888888885 77777888766666 88899 67899965 3 332221 2 1357788888875
|
... |
| >cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1 | Back alignment and domain information |
|---|
Probab=81.44 E-value=21 Score=28.37 Aligned_cols=71 Identities=15% Similarity=0.130 Sum_probs=48.5
Q ss_pred ecCChHHHHHHHHhcCCcccEEEEecC-------C--------hhHHHHHHHhhcCceeEEeecc--------cchhhHh
Q 020623 31 ILNSDAEVSDFVENAGTFFPLFIGFGL-------D--------ESVMSNLALKYKKKAWFAVAKD--------FSEDTMV 87 (323)
Q Consensus 31 ~i~s~~~l~~fl~~~~~~~~~vVgf~~-------~--------~~~f~~~A~~~~~~~~F~~~~~--------~~~~~~~ 87 (323)
.+.+.+++.+.+...+.. +++|-|.. + ...+.+++.++.+.+.|..++- .+.++..
T Consensus 5 ~~~~~~~f~~~i~~~~~~-~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~ 83 (119)
T cd02952 5 AVRGYEEFLKLLKSHEGK-PIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRT 83 (119)
T ss_pred cccCHHHHHHHHHhcCCC-eEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHh
Confidence 467888888888763211 57777754 2 2478889988876666655431 1346777
Q ss_pred hcCCC-CCCeEEEecC
Q 020623 88 LYDFD-KVPALVALQP 102 (323)
Q Consensus 88 ~~~~~-~~p~ivv~k~ 102 (323)
++++. ..|++++|+.
T Consensus 84 ~~~I~~~iPT~~~~~~ 99 (119)
T cd02952 84 DPKLTTGVPTLLRWKT 99 (119)
T ss_pred ccCcccCCCEEEEEcC
Confidence 88887 8999999965
|
TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases. |
| >cd02958 UAS UAS family; UAS is a domain of unknown function | Back alignment and domain information |
|---|
Probab=81.39 E-value=23 Score=27.39 Aligned_cols=55 Identities=15% Similarity=0.244 Sum_probs=37.0
Q ss_pred eEEEEEcCcc--hhhHhhhcCCcCCCCCCeEEEEeC-Ccc--eeeccCCCCCCCCCCHHHHHHHHHHHHc
Q 020623 179 LVFCYVGIKQ--FADFADTFEANKKSKLPKMVVWDG-NEN--YLTVIGSESIDEEDQGSQISRFLEGYRE 243 (323)
Q Consensus 179 l~F~~vd~~~--~~~~~~~~gl~~~~~~P~ivI~~~-~~k--Y~~~~~~~~~~~~~t~~~I~~Fi~~~~~ 243 (323)
+.+..+|... ...+++.|++ ..+|.++++++ +++ +.. .+..+++.+..-++.+..
T Consensus 53 ~v~~~~d~~~~e~~~~~~~~~~---~~~P~~~~i~~~~g~~l~~~-------~G~~~~~~f~~~L~~~~~ 112 (114)
T cd02958 53 FIFWQCDIDSSEGQRFLQSYKV---DKYPHIAIIDPRTGEVLKVW-------SGNITPEDLLSQLIEFLE 112 (114)
T ss_pred EEEEEecCCCccHHHHHHHhCc---cCCCeEEEEeCccCcEeEEE-------cCCCCHHHHHHHHHHHHh
Confidence 6666677753 3457788887 57999999998 553 322 344677777777766654
|
Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP), |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3trq_A* 3trp_A* 3uom_A Length = 367 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 4e-27
Identities = 42/260 (16%), Positives = 89/260 (34%), Gaps = 25/260 (9%)
Query: 2 HGIPTEYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFGLDESV 61
EY G A+ LV +L + V ++ + E+ F IG+ ++
Sbjct: 100 EDEVIEYDGEFSADTLVEFLLDVLEDPVELIEGERELQAFENIED--EIKLIGYFKNKD- 156
Query: 62 MSNLALKYKKKAWFAVAKDFSEDTMVLYDFD---------KVPALVALQPSYNEHNIFYG 112
KA+ A++F FD K+ + + E
Sbjct: 157 ------SEHYKAFKEAAEEFHPYIPFFATFDSKVAKKLTLKLNEIDFYEAFMEEPVTIPD 210
Query: 113 -PFDEEFLEEFIKQNFLPLSVPINQDTLN-LLKDDKRKIVLAIVEDETEEKSQKLVTTLK 170
P EE + F++++ + +++ +DD I + +E + + + LK
Sbjct: 211 KPNSEEEIVNFVEEHRRSTLRKLKPESMYETWEDDMDGIHIVAFAEEADPDGYEFLEILK 270
Query: 171 AAASANRE---LVFCYVGIKQFADFADTFEANKKSKL--PKMVVWDGNENYLTVIGSESI 225
+ A N + L ++ F +E L P++ V + + + +
Sbjct: 271 SVAQDNTDNPDLSIIWIDPDDFPLLVPYWEKTFDIDLSAPQIGVVNVTDADSVWMEMDDE 330
Query: 226 DEEDQGSQISRFLEGYREGR 245
++ ++ +LE EG
Sbjct: 331 EDLPSAEELEDWLEDVLEGE 350
|
| >2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens} Length = 382 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 8e-27
Identities = 32/262 (12%), Positives = 82/262 (31%), Gaps = 27/262 (10%)
Query: 4 IPTEYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFGLDESVMS 63
+ EY G R + L Y+++ + + + AE++ + F
Sbjct: 95 MKREYRGQRSVKALADYIRQQKSDPIQEIRDLAEITTLDRSKRNIIGYFEQKD------- 147
Query: 64 NLALKYKKKAWFAVAKDFSEDTMVLYDFDKV--------PALVALQPSYNEHNIFY--GP 113
+ + VA +D L F V ++ P ++ ++ Y
Sbjct: 148 ----SDNYRVFERVANILHDDCAFLSAFGDVSKPERYSGDNIIYKPPGHSAPDMVYLGAM 203
Query: 114 FDEEFLEEFIKQNFLPLSVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAA 173
+ + +I+ +PL I + L ++ ++ E E + +
Sbjct: 204 TNFDVTYNWIQDKCVPLVREITFENGEELTEEGLPFLILFHMKEDTESLEIFQNEVARQL 263
Query: 174 SANR-ELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYLTVIGSESIDEEDQGS 232
+ + + F + +F + + P + + Y+ + +
Sbjct: 264 ISEKGTINFLHADCDKFRHPLLHIQ-KTPADCPVIAIDSFRHMYVFGDFKDVLIPGK--- 319
Query: 233 QISRFLEGYREGRTEQKKVAGP 254
+ +F+ G+ ++ GP
Sbjct: 320 -LKQFVFDLHSGKLHREFHHGP 340
|
| >1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A Length = 350 | Back alignment and structure |
|---|
Score = 101 bits (252), Expect = 1e-24
Identities = 49/263 (18%), Positives = 94/263 (35%), Gaps = 31/263 (11%)
Query: 2 HGIPTEYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFGLDESV 61
E+ G A++LV +L + V I+NS EV F IGF E
Sbjct: 98 GDRTIEFDGEFAADVLVEFLLDLIEDPVEIINSKLEVQAFERIEDQ--IKLIGFFKSEE- 154
Query: 62 MSNLALKYKKKAWFAVAKDFSEDTMVLYDFD---------KVPALVALQPSYNEHNIFY- 111
KA+ A+ F FD K+ + +P +E
Sbjct: 155 ------SEYYKAFEEAAEHFQPYIKFFATFDKGVAKKLSLKMNEVDFYEPFMDEPIAIPD 208
Query: 112 GPFDEEFLEEFIKQNFLPLSVPINQDTLN-LLKDDKRKIVLAIVEDETEEKSQKLVTTLK 170
P+ EE L EF+K++ P + + + +DD I + + ++ + + LK
Sbjct: 209 KPYTEEELVEFVKEHQRPTLRRLRPEDMFETWEDDLNGIHIVAFAERSDPDGYEFLEILK 268
Query: 171 AAASANRE---LVFCYVGIKQFADFADTFEAN-----KKSKLPKMVVWDGNENYLTVIGS 222
A N + L ++ F +E K ++ + V D + ++ +
Sbjct: 269 QVARDNTDNPDLSIVWIDPDDFPLLVAYWEKTFKIDLFKPQIGVVNVTDADSVWMEIPDD 328
Query: 223 ESIDEEDQGSQISRFLEGYREGR 245
+ + + ++ ++E G+
Sbjct: 329 DDLPTAE---ELEDWIEDVLSGK 348
|
| >3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A Length = 481 | Back alignment and structure |
|---|
Score = 81.4 bits (200), Expect = 3e-17
Identities = 45/257 (17%), Positives = 92/257 (35%), Gaps = 16/257 (6%)
Query: 5 PTEYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFGLDESVMSN 64
Y GPR A+ +V +LKK P L ++ E F+ + F E+
Sbjct: 88 AGAYDGPRTADGIVSHLKKQAGPASVPLRTEEEFKKFISDKDASIVGFFDDSFSEAHSEF 147
Query: 65 LALKYKKKAWFAVAKDFSEDTMVLYDFDKVPALVA----LQPSYNEHNIFY--GPFDEEF 118
L + + A E + YD + ++ L + + + Y
Sbjct: 148 LKAASNLRDNYRFAHTNVESLVNEYDDNGEGIILFRPSHLTNKFEDKTVAYTEQKMTSGK 207
Query: 119 LEEFIKQNFLPLSVPINQDTLNLLKDDKRKIVLAIVEDE-----TEEKSQKLVTTLKAAA 173
+++FI++N + + +D +L++ I V+ E + +++ K
Sbjct: 208 IKKFIQENIFGICPHMTEDNKDLIQGKDLLIAYYDVDYEKNAKGSNYWRNRVMMVAKKFL 267
Query: 174 SANRELVFCYVGIKQFADFADTFE-ANKKSKLPKMVVWDGNENYLTVIGSESIDEEDQGS 232
A +L F K F+ F + ++P + + + S D +
Sbjct: 268 DAGHKLNFAVASRKTFSHELSDFGLESTAGEIPVVAIRTAKGEKFVMQEEFSRDGKA--- 324
Query: 233 QISRFLEGYREGRTEQK 249
+ RFL+ Y +G ++
Sbjct: 325 -LERFLQDYFDGNLKRY 340
|
| >3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A Length = 361 | Back alignment and structure |
|---|
Score = 74.0 bits (181), Expect = 5e-15
Identities = 45/265 (16%), Positives = 82/265 (30%), Gaps = 21/265 (7%)
Query: 12 RKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFGLDESVMSNLALKYKK 71
+ L + + + L A VE++ IGF D
Sbjct: 2 HHSSGLEVLFQGPGSEFATTLPDGAAAESLVESSEVAV---IGFFKDVE-------SDSA 51
Query: 72 KAWFAVAKDFSEDTMVLYDFDKV--------PALVALQPSYNEHNIFYGPFDEEFLEEFI 123
K + A+ + + V +V + N F G +E L +FI
Sbjct: 52 KQFLQAAEAIDDIPFGITSNSDVFSKYQLDKDGVVLFKKFDEGRNNFEGEVTKENLLDFI 111
Query: 124 KQNFLPLSVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANR---ELV 180
K N LPL + + T + + K + + ++ ++ K AA + + +
Sbjct: 112 KHNQLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGKILFI 171
Query: 181 FCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEG 240
F + F K+ ++ E SE + E RFLEG
Sbjct: 172 FIDSDHTDNQRILEFFGLKKEECPAVRLITLEEEMTKYKPESEELTAERITEFCHRFLEG 231
Query: 241 YREGRTEQKKVAGPSIFGFVNSLIG 265
+ +++ V L+G
Sbjct: 232 KIKPHLMSQELPEDWDKQPVKVLVG 256
|
| >2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A Length = 504 | Back alignment and structure |
|---|
Score = 66.4 bits (161), Expect = 3e-12
Identities = 43/262 (16%), Positives = 87/262 (33%), Gaps = 31/262 (11%)
Query: 5 PTEYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFGLDESVMSN 64
+Y GPR AE +V+++ K P V+++ TF I N
Sbjct: 101 SIDYEGPRTAEAIVQFMIKQSQPAVAVVADL----PAYLANETFVTPVIVQSGKIDADFN 156
Query: 65 LALKYKKKAWFAVAKDFSEDTMVLYDFDKV---PALVALQPSYNEHNIFYGP----FDEE 117
++++A D + + + L + +E ++ G D +
Sbjct: 157 -------ATFYSMANKHFNDYDFVSAENADDDFKLSIYLPSAMDEPVVYNGKKADIADAD 209
Query: 118 FLEEFIKQNFLPLSVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANR 177
E++++ LP I+ + + D EE+ ++ A NR
Sbjct: 210 VFEKWLQVEALPYFGEIDGSVFAQYVESGLPLGYLFYND--EEELEEYKPLFTELAKKNR 267
Query: 178 ELV-FCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYLTVIGSESIDEEDQ------ 230
L+ F + ++F A N K + P + D E+ + S + D+
Sbjct: 268 GLMNFVSIDARKFGRHAGNL--NMKEQFPLFAIHDMTEDLKYGLPQLSEEAFDELSDKIV 325
Query: 231 --GSQISRFLEGYREGRTEQKK 250
I ++ + +G
Sbjct: 326 LESKAIESLVKDFLKGDASPIV 347
|
| >3ec3_A Protein disulfide-isomerase A4; thioredoxin-like fold, endoplasmic reticulum, glycoprotein, redox-active center; 1.92A {Rattus norvegicus} Length = 250 | Back alignment and structure |
|---|
Score = 59.8 bits (144), Expect = 1e-10
Identities = 27/243 (11%), Positives = 68/243 (27%), Gaps = 32/243 (13%)
Query: 25 VAPDVSILNSDAEVSDFVENAGTFFPLFIGFGLDES-----VMSNLALKYKKKAWFAVAK 79
+P + + +V +F+++ + +G + A ++ F
Sbjct: 4 GSPPSKEILTLKQVQEFLKDGDD--VVILGVFQGVGDPGYLQYQDAANTLREDYKFHHTF 61
Query: 80 D--------FSEDTMVLYDFDKVPALVALQPSYNEHNIFY---GPFDEEFLEEFIKQNFL 128
S +VL +K Q Y G + +++++ ++ L
Sbjct: 62 STEIAKFLKVSLGKLVLMQPEK------FQSKYEPRMHVMDVQGSTEASAIKDYVVKHAL 115
Query: 129 PLSVPINQDTLNLLKDDKRKIVL---AIVEDETEEKSQKLVTTLKAAASANRELVFCYVG 185
PL + +V+ + +Q + A E F
Sbjct: 116 PLVGHRKTSNDAKRYSKRPLVVVYYSVDFSFDYRTATQFWRNKVLEVAKDFPEYTFAIAD 175
Query: 186 IKQFADFADTFEANKKSKLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEGYREGR 245
+ +A +S + E D + + F+ +++G+
Sbjct: 176 EEDYATEVKDL-GLSESGGDVNAAILDESGKKFAMEPEEFDSDA----LREFVMAFKKGK 230
Query: 246 TEQ 248
+
Sbjct: 231 LKP 233
|
| >3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae} Length = 298 | Back alignment and structure |
|---|
Score = 52.8 bits (126), Expect = 4e-08
Identities = 14/145 (9%), Positives = 40/145 (27%), Gaps = 12/145 (8%)
Query: 5 PTEYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFGLDESVMSN 64
Y G R +V + + V + + + + + +S
Sbjct: 121 NEVYSGARTLAPIVDFSLSRIRSYVKKFVRIDTLGSLLRKSPKL---SVVLFSKQDKIS- 176
Query: 65 LALKYKKKAWFAVAKDFSEDTMVLYDFDK-VPALVALQPSYNEHNIFYGPFDEEFLEEFI 123
+ ++A D+ +K + L + P+Y + + + E+
Sbjct: 177 -------PVYKSIALDWLGKFDFYSISNKKLKQLTDMNPTYEKTPEIFKYLQKVIPEQRQ 229
Query: 124 KQNFLPLSVPINQDTLNLLKDDKRK 148
+ ++D + +
Sbjct: 230 SDKSKLVVFDADKDKFWEYEGNSIN 254
|
| >3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780 | Back alignment and structure |
|---|
Score = 51.3 bits (122), Expect = 2e-07
Identities = 31/234 (13%), Positives = 51/234 (21%), Gaps = 13/234 (5%)
Query: 5 PTEYYGPRKAELLVRYLKKFVAPDVSILNS---DAEVSDFVENAGTFFPLFIGFGLD-ES 60
+Y G R E LV + + V V+ L++ + + F G D +
Sbjct: 200 AVKYNGDRSKESLVAFAMQHVRSTVTELSTGNFVNAIETAFAAGVGWLITFCSKGEDCLT 259
Query: 61 VMSNLALKYKKKAWFAVAK-DFSEDTMVLYDFDKVPALVALQPSYNEHNIFYG----PFD 115
+ L L V D + D + A P N +
Sbjct: 260 SQTRLRLSGMLDGLVNVGWVDCDAQDSLCKSLDTTASTTAYFPPGATLNDREKSSVLFLN 319
Query: 116 EEFLEEFIKQNFLPLSVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASA 175
+E + L L L E +
Sbjct: 320 SLDAKEIYMEIIHNLPDFELLSANQLEDRLAHHRWLVFFHFGKNENANDPELKKLKTLLK 379
Query: 176 NRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYLTVIGSESIDEED 229
N + + P + V+ G I D
Sbjct: 380 NEHIQVVRFDCSSAPGICSDLYVFQ----PSLAVFKGQGTKEYEIHHGKKILYD 429
|
| >3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780 | Back alignment and structure |
|---|
Score = 40.9 bits (95), Expect = 4e-04
Identities = 22/191 (11%), Positives = 46/191 (24%), Gaps = 14/191 (7%)
Query: 3 GIPTEYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFGLD---- 58
EY G AE ++ +++ P V L ++ V+ + F
Sbjct: 519 SSIHEYEGHHSAEQILEFIEDLRNPSVVSLTPS-TFNELVKQRKHDEVWMVDFYSPWSHP 577
Query: 59 ----ESVMSNLALKYKKKAWFA-VAKDFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGP 113
+A V + + P + ++ ++
Sbjct: 578 SQVLMPEWKRMARTLTGLINVGSVDCGQYHSFCTQENVQRYPEIRFYPQKSSKAYQYHSY 637
Query: 114 F----DEEFLEEFIKQNFLPLSVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTL 169
D L + S+ + T N + + SQ
Sbjct: 638 NGWNRDAYSLRSWGLGFLPQASIDLTPQTFNEKVLQGKTHWVVDFYAPWSGPSQNFAPEF 697
Query: 170 KAAASANRELV 180
+ A + V
Sbjct: 698 ELLARMIKGKV 708
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 51.0 bits (121), Expect = 3e-07
Identities = 54/320 (16%), Positives = 99/320 (30%), Gaps = 94/320 (29%)
Query: 16 LLV-------RYLKKFVAPDVS----ILNSDAEVSDFVENAGTFFP----LFIGFGLDES 60
LLV + F ++S + +V+DF+ A T + DE
Sbjct: 247 LLVLLNVQNAKAWNAF---NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV 303
Query: 61 VMSNLALKY------------KKKAWFAVA------KDFSE--DTMVLYDFDKVPALVAL 100
+L LKY ++ +D D + DK+ +
Sbjct: 304 K--SLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT--II 359
Query: 101 QPSYNEHNIFYGPFDEEFLEEFIKQNFLPLSVPINQDTLNLLKDDKRKIVLAIVEDETEE 160
+ S N E+ + F + + P S I L+L+ D K + +V ++ +
Sbjct: 360 ESSLNVLE------PAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK 413
Query: 161 KS-----------------QKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSK 203
S +L L+ + +R +V Y + TF+++
Sbjct: 414 YSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHY-------NIPKTFDSDDLIP 466
Query: 204 LPKMVVWDGNENYL-TVIG-----SESIDEEDQGSQIS---RFLEGYREGRTEQKKVAGP 254
D Y + IG E + + RFL E + A
Sbjct: 467 PY----LD---QYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFL----EQKIRHDSTAWN 515
Query: 255 SIFGFVNSLIGIR--SVYII 272
+ +N+L ++ YI
Sbjct: 516 ASGSILNTLQQLKFYKPYIC 535
|
| >3bj5_A Protein disulfide-isomerase; thioredoxin fold, chaperone, endoplasmic reticulum, isomeras membrane, redox-active center; 2.20A {Homo sapiens} Length = 147 | Back alignment and structure |
|---|
Score = 47.7 bits (113), Expect = 4e-07
Identities = 23/135 (17%), Positives = 49/135 (36%), Gaps = 7/135 (5%)
Query: 117 EFLEEFIKQNFLPLSVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASAN 176
+K N LPL + + T + + K + + ++ ++ K AA +
Sbjct: 2 HHHHHHMKHNQLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESF 61
Query: 177 R-ELVFCYVGIKQF-ADFADTFEANKKSKLPKMVVWDGNENYL-TVIGSESIDEEDQGSQ 233
+ +++F ++ F KK + P + + E SE + E
Sbjct: 62 KGKILFAFIDSDHTDNQRILEFFGLKKEECPAVRLITLEEEMTKYKPESEELTAER---- 117
Query: 234 ISRFLEGYREGRTEQ 248
I+ F + EG+ +
Sbjct: 118 ITEFCHRFLEGKIKP 132
|
| >3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A Length = 241 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 1e-05
Identities = 21/149 (14%), Positives = 46/149 (30%), Gaps = 25/149 (16%)
Query: 2 HGIPTEYYGPRKAELLVRYLKKFVAPDVSILNSDAEV---SDFVENAGTFFPLFIGFGLD 58
G +Y G R E +V +++ PD + V +F E + + F
Sbjct: 98 KGQAVDYEGSRTQEEIVAKVREVSQPDWTPPPEVTLVLTKENFDEVVNDADIILVEFYAP 157
Query: 59 ESVMSNLALKYKKKAWFAVAKDFSEDTMVL----------------YDFDKVPALVALQP 102
K + AK+ S+ + + +D P L +
Sbjct: 158 WCG----HCKKLAPEYEKAAKELSKRSPPIPLAKVDATAETDLAKRFDVSGYPTLKIFRK 213
Query: 103 SYNEHNIFYGPFDEEFLEEFIKQNFLPLS 131
+ GP ++ + +++ + +
Sbjct: 214 G--RPYDYNGPREKYGIVDYMIEQSGAAA 240
|
| >2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A Length = 133 | Back alignment and structure |
|---|
Score = 39.8 bits (93), Expect = 2e-04
Identities = 29/122 (23%), Positives = 46/122 (37%), Gaps = 7/122 (5%)
Query: 128 LPLSVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANR-ELVFCYVGI 186
PL I +T + I LA + ET E+ ++L LK A A R + F +
Sbjct: 5 SPLIGEIGPETYSDYMS--AGIPLAYIFAETAEERKELSDKLKPIAEAQRGVINFGTIDA 62
Query: 187 KQFADFADTFEANKKSKLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEGYREGRT 246
K F A K K P + + +N ++E I F++ + G+
Sbjct: 63 KAFGAHAGNLNL-KTDKFPAFAIQEVAKNQKFPFDQ---EKEITFEAIKAFVDDFVAGKI 118
Query: 247 EQ 248
E
Sbjct: 119 EP 120
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 323 | |||
| 3ec3_A | 250 | Protein disulfide-isomerase A4; thioredoxin-like f | 100.0 | |
| 2h8l_A | 252 | Protein disulfide-isomerase A3; thioredoxin-like f | 100.0 | |
| 3us3_A | 367 | Calsequestrin-1; calcium-binding protein; 1.74A {O | 100.0 | |
| 3f8u_A | 481 | Protein disulfide-isomerase A3ERP57; endoplasmic r | 100.0 | |
| 2r2j_A | 382 | Thioredoxin domain-containing protein 4; CRFS moti | 99.97 | |
| 1sji_A | 350 | Calsequestrin 2, calsequestrin, cardiac muscle iso | 99.97 | |
| 3uem_A | 361 | Protein disulfide-isomerase; thioredoxin-like doma | 99.97 | |
| 4f9z_D | 227 | Endoplasmic reticulum resident protein 27; thiored | 99.96 | |
| 2b5e_A | 504 | Protein disulfide-isomerase; 2.40A {Saccharomyces | 99.96 | |
| 3bj5_A | 147 | Protein disulfide-isomerase; thioredoxin fold, cha | 99.88 | |
| 3apo_A | 780 | DNAJ homolog subfamily C member 10; PDI family, th | 99.81 | |
| 2djk_A | 133 | PDI, protein disulfide-isomerase; thioredoxin fold | 99.74 | |
| 3apo_A | 780 | DNAJ homolog subfamily C member 10; PDI family, th | 99.66 | |
| 3uem_A | 361 | Protein disulfide-isomerase; thioredoxin-like doma | 99.52 | |
| 3ed3_A | 298 | Protein disulfide-isomerase MPD1; thioredoxin-like | 99.46 | |
| 2l4c_A | 124 | Endoplasmic reticulum resident protein 27; ERP27, | 99.45 | |
| 3ed3_A | 298 | Protein disulfide-isomerase MPD1; thioredoxin-like | 99.34 | |
| 3idv_A | 241 | Protein disulfide-isomerase A4; thioredoxin-like f | 99.32 | |
| 1sji_A | 350 | Calsequestrin 2, calsequestrin, cardiac muscle iso | 99.24 | |
| 3f8u_A | 481 | Protein disulfide-isomerase A3ERP57; endoplasmic r | 99.21 | |
| 3us3_A | 367 | Calsequestrin-1; calcium-binding protein; 1.74A {O | 99.2 | |
| 2ywm_A | 229 | Glutaredoxin-like protein; redox protein, structur | 99.14 | |
| 2b5e_A | 504 | Protein disulfide-isomerase; 2.40A {Saccharomyces | 98.99 | |
| 1a8l_A | 226 | Protein disulfide oxidoreductase; PDI, thioredoxin | 98.99 | |
| 2r2j_A | 382 | Thioredoxin domain-containing protein 4; CRFS moti | 98.91 | |
| 3q6o_A | 244 | Sulfhydryl oxidase 1; protein disulfide isomerase, | 98.72 | |
| 3idv_A | 241 | Protein disulfide-isomerase A4; thioredoxin-like f | 98.7 | |
| 2hls_A | 243 | Protein disulfide oxidoreductase; thioredoxin fold | 98.58 | |
| 3t58_A | 519 | Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2. | 98.48 | |
| 4f9z_D | 227 | Endoplasmic reticulum resident protein 27; thiored | 98.47 | |
| 3tco_A | 109 | Thioredoxin (TRXA-1); disulfide oxidoreductase, ox | 98.19 | |
| 3gnj_A | 111 | Thioredoxin domain protein; APC92103, STR genomics | 98.18 | |
| 3hz4_A | 140 | Thioredoxin; NYSGXRC, PSI-II, reduced form, protei | 98.12 | |
| 2e0q_A | 104 | Thioredoxin; electron transport; 1.49A {Sulfolobus | 98.1 | |
| 3hxs_A | 141 | Thioredoxin, TRXP; electron transport; 2.00A {Bact | 98.1 | |
| 2l5l_A | 136 | Thioredoxin; structural genomics, electron transpo | 98.06 | |
| 3p2a_A | 148 | Thioredoxin 2, putative thioredoxin-like protein; | 98.05 | |
| 3die_A | 106 | Thioredoxin, TRX; electron transport, SWAP domain, | 98.02 | |
| 2yzu_A | 109 | Thioredoxin; redox protein, electron transport, st | 98.02 | |
| 2trx_A | 108 | Thioredoxin; electron transport; 1.68A {Escherichi | 98.02 | |
| 1thx_A | 115 | Thioredoxin, thioredoxin 2; oxido-reductase, elect | 98.01 | |
| 3zzx_A | 105 | Thioredoxin; oxidoreductase; 1.88A {Litopenaeus va | 98.0 | |
| 2ppt_A | 155 | Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc | 98.0 | |
| 1nsw_A | 105 | Thioredoxin, TRX; thermostability, electron transp | 97.99 | |
| 1v98_A | 140 | Thioredoxin; oxidoreductase, structural genomics, | 97.96 | |
| 3qfa_C | 116 | Thioredoxin; protein-protein complex, rossmann fol | 97.96 | |
| 1fb6_A | 105 | Thioredoxin M; electron transport; 2.10A {Spinacia | 97.96 | |
| 1w4v_A | 119 | Thioredoxin, mitochondrial; antioxidant enzyme, mi | 97.94 | |
| 1dby_A | 107 | Chloroplast thioredoxin M CH2; thioredoxin CH2, ch | 97.94 | |
| 2vim_A | 104 | Thioredoxin, TRX; thioredoxin fold, oxidoreductase | 97.93 | |
| 2dml_A | 130 | Protein disulfide-isomerase A6; thioredoxin domain | 97.93 | |
| 3aps_A | 122 | DNAJ homolog subfamily C member 10; thioredoxin fo | 97.91 | |
| 2i4a_A | 107 | Thioredoxin; acidophIle, disulfide exchange, oxido | 97.91 | |
| 1x5d_A | 133 | Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC | 97.91 | |
| 2h8l_A | 252 | Protein disulfide-isomerase A3; thioredoxin-like f | 97.9 | |
| 2i1u_A | 121 | Thioredoxin, TRX, MPT46; redox protein, electron t | 97.89 | |
| 1r26_A | 125 | Thioredoxin; redox-active disulfide, electron tran | 97.89 | |
| 1t00_A | 112 | Thioredoxin, TRX; redox regulation, multifunction | 97.85 | |
| 3h79_A | 127 | Thioredoxin-like protein; thioredoxin fold, cataly | 97.84 | |
| 2vlu_A | 122 | Thioredoxin, thioredoxin H isoform 2.; oxidoreduct | 97.84 | |
| 3h79_A | 127 | Thioredoxin-like protein; thioredoxin fold, cataly | 97.84 | |
| 3m9j_A | 105 | Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} | 97.83 | |
| 3f3q_A | 109 | Thioredoxin-1; His TAG, electron transport, cytopl | 97.83 | |
| 2djk_A | 133 | PDI, protein disulfide-isomerase; thioredoxin fold | 97.83 | |
| 2o8v_B | 128 | Thioredoxin 1; disulfide crosslinked complex, oxid | 97.83 | |
| 1syr_A | 112 | Thioredoxin; SGPP, structural genomics, PSI, prote | 97.83 | |
| 2pu9_C | 111 | TRX-F, thioredoxin F-type, chloroplast; protein-pr | 97.82 | |
| 3dxb_A | 222 | Thioredoxin N-terminally fused to PUF60(UHM); spli | 97.8 | |
| 1xwb_A | 106 | Thioredoxin; dimerization, redox regulation, THI X | 97.8 | |
| 2dj1_A | 140 | Protein disulfide-isomerase A4; protein ERP-72, ER | 97.79 | |
| 1ep7_A | 112 | Thioredoxin CH1, H-type; electron transport; 2.10A | 97.77 | |
| 2l57_A | 126 | Uncharacterized protein; structural genomics, unkn | 97.76 | |
| 3uvt_A | 111 | Thioredoxin domain-containing protein 5; thioredox | 97.74 | |
| 4euy_A | 105 | Uncharacterized protein; structural genomics, PSI- | 97.71 | |
| 1gh2_A | 107 | Thioredoxin-like protein; redox-active center, ele | 97.71 | |
| 3apq_A | 210 | DNAJ homolog subfamily C member 10; thioredoxin fo | 97.68 | |
| 2voc_A | 112 | Thioredoxin; electron transport, homodimer, disulf | 97.67 | |
| 3d6i_A | 112 | Monothiol glutaredoxin-3; thioredoxin-like, electr | 97.66 | |
| 3ga4_A | 178 | Dolichyl-diphosphooligosaccharide-protein glycosyl | 97.66 | |
| 2vm1_A | 118 | Thioredoxin, thioredoxin H isoform 1.; oxidoreduct | 97.65 | |
| 1faa_A | 124 | Thioredoxin F; electron transport; 1.85A {Spinacia | 97.63 | |
| 2xc2_A | 117 | Thioredoxinn; oxidoreductase, protein disulfide re | 97.61 | |
| 3zzx_A | 105 | Thioredoxin; oxidoreductase; 1.88A {Litopenaeus va | 97.61 | |
| 2qsi_A | 137 | Putative hydrogenase expression/formation protein; | 97.61 | |
| 1ti3_A | 113 | Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul | 97.6 | |
| 2c0g_A | 248 | ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, | 97.59 | |
| 1x5e_A | 126 | Thioredoxin domain containing protein 1; TMX, TXND | 97.58 | |
| 2j23_A | 121 | Thioredoxin; immune protein, autoreactivity, cross | 97.58 | |
| 1mek_A | 120 | Protein disulfide isomerase; electron transport, r | 97.58 | |
| 2wz9_A | 153 | Glutaredoxin-3; protein binding; 1.55A {Homo sapie | 97.56 | |
| 2qc7_A | 240 | ERP31, ERP28, endoplasmic reticulum protein ERP29; | 97.56 | |
| 3evi_A | 118 | Phosducin-like protein 2; alpha beta, 3-layer(ABA) | 97.55 | |
| 3ec3_A | 250 | Protein disulfide-isomerase A4; thioredoxin-like f | 97.54 | |
| 1xfl_A | 124 | Thioredoxin H1; AT3G51030, structural genomics, pr | 97.51 | |
| 2dj3_A | 133 | Protein disulfide-isomerase A4; protein ERP-72, ER | 97.48 | |
| 3ga4_A | 178 | Dolichyl-diphosphooligosaccharide-protein glycosyl | 97.47 | |
| 3gnj_A | 111 | Thioredoxin domain protein; APC92103, STR genomics | 97.44 | |
| 3ul3_B | 128 | Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; | 97.42 | |
| 3tco_A | 109 | Thioredoxin (TRXA-1); disulfide oxidoreductase, ox | 97.42 | |
| 2l6c_A | 110 | Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu | 97.41 | |
| 1ep7_A | 112 | Thioredoxin CH1, H-type; electron transport; 2.10A | 97.41 | |
| 2f51_A | 118 | Thioredoxin; electron transport; 1.90A {Trichomona | 97.41 | |
| 3m9j_A | 105 | Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} | 97.4 | |
| 2av4_A | 160 | Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECI | 97.4 | |
| 3apq_A | 210 | DNAJ homolog subfamily C member 10; thioredoxin fo | 97.38 | |
| 2qgv_A | 140 | Hydrogenase-1 operon protein HYAE; alpha-beta prot | 97.37 | |
| 2ywm_A | 229 | Glutaredoxin-like protein; redox protein, structur | 97.36 | |
| 2wz9_A | 153 | Glutaredoxin-3; protein binding; 1.55A {Homo sapie | 97.33 | |
| 2dbc_A | 135 | PDCL2, unnamed protein product; phosducin-like pro | 97.33 | |
| 1a8l_A | 226 | Protein disulfide oxidoreductase; PDI, thioredoxin | 97.32 | |
| 1xwb_A | 106 | Thioredoxin; dimerization, redox regulation, THI X | 97.32 | |
| 3d22_A | 139 | TRXH4, thioredoxin H-type; electron transport, cyt | 97.32 | |
| 2dml_A | 130 | Protein disulfide-isomerase A6; thioredoxin domain | 97.32 | |
| 2oe3_A | 114 | Thioredoxin-3; electron transport, alpha/beta sand | 97.31 | |
| 2dj1_A | 140 | Protein disulfide-isomerase A4; protein ERP-72, ER | 97.31 | |
| 2djj_A | 121 | PDI, protein disulfide-isomerase; thioredoxin fold | 97.3 | |
| 2es7_A | 142 | Q8ZP25_salty, putative thiol-disulfide isomerase a | 97.26 | |
| 1oaz_A | 123 | Thioredoxin 1; immune system, antibody/complex, an | 97.25 | |
| 1mek_A | 120 | Protein disulfide isomerase; electron transport, r | 97.25 | |
| 2qgv_A | 140 | Hydrogenase-1 operon protein HYAE; alpha-beta prot | 97.24 | |
| 2voc_A | 112 | Thioredoxin; electron transport, homodimer, disulf | 97.23 | |
| 3uvt_A | 111 | Thioredoxin domain-containing protein 5; thioredox | 97.23 | |
| 3die_A | 106 | Thioredoxin, TRX; electron transport, SWAP domain, | 97.21 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 97.2 | |
| 3qfa_C | 116 | Thioredoxin; protein-protein complex, rossmann fol | 97.19 | |
| 3q6o_A | 244 | Sulfhydryl oxidase 1; protein disulfide isomerase, | 97.19 | |
| 2vim_A | 104 | Thioredoxin, TRX; thioredoxin fold, oxidoreductase | 97.18 | |
| 2j23_A | 121 | Thioredoxin; immune protein, autoreactivity, cross | 97.17 | |
| 2es7_A | 142 | Q8ZP25_salty, putative thiol-disulfide isomerase a | 97.13 | |
| 2yzu_A | 109 | Thioredoxin; redox protein, electron transport, st | 97.12 | |
| 1syr_A | 112 | Thioredoxin; SGPP, structural genomics, PSI, prote | 97.11 | |
| 1thx_A | 115 | Thioredoxin, thioredoxin 2; oxido-reductase, elect | 97.11 | |
| 1r26_A | 125 | Thioredoxin; redox-active disulfide, electron tran | 97.09 | |
| 1wou_A | 123 | Thioredoxin -related protein, 14 kDa; electron tra | 97.07 | |
| 3emx_A | 135 | Thioredoxin; structural genomics, oxidoreductase, | 97.07 | |
| 3p2a_A | 148 | Thioredoxin 2, putative thioredoxin-like protein; | 97.05 | |
| 2qc7_A | 240 | ERP31, ERP28, endoplasmic reticulum protein ERP29; | 97.04 | |
| 2oe3_A | 114 | Thioredoxin-3; electron transport, alpha/beta sand | 97.04 | |
| 2i4a_A | 107 | Thioredoxin; acidophIle, disulfide exchange, oxido | 97.04 | |
| 1gh2_A | 107 | Thioredoxin-like protein; redox-active center, ele | 97.02 | |
| 2qsi_A | 137 | Putative hydrogenase expression/formation protein; | 96.99 | |
| 3hxs_A | 141 | Thioredoxin, TRXP; electron transport; 2.00A {Bact | 96.98 | |
| 1dby_A | 107 | Chloroplast thioredoxin M CH2; thioredoxin CH2, ch | 96.98 | |
| 2e0q_A | 104 | Thioredoxin; electron transport; 1.49A {Sulfolobus | 96.98 | |
| 1w4v_A | 119 | Thioredoxin, mitochondrial; antioxidant enzyme, mi | 96.98 | |
| 1zma_A | 118 | Bacterocin transport accessory protein; alpha-beta | 96.93 | |
| 1x5d_A | 133 | Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC | 96.93 | |
| 2ppt_A | 155 | Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc | 96.9 | |
| 2trx_A | 108 | Thioredoxin; electron transport; 1.68A {Escherichi | 96.87 | |
| 3hz4_A | 140 | Thioredoxin; NYSGXRC, PSI-II, reduced form, protei | 96.87 | |
| 3gix_A | 149 | Thioredoxin-like protein 4B; PRE-mRNA splicing, TX | 96.84 | |
| 1nsw_A | 105 | Thioredoxin, TRX; thermostability, electron transp | 96.83 | |
| 1xfl_A | 124 | Thioredoxin H1; AT3G51030, structural genomics, pr | 96.82 | |
| 2yj7_A | 106 | LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti | 95.86 | |
| 2xc2_A | 117 | Thioredoxinn; oxidoreductase, protein disulfide re | 96.79 | |
| 2vm1_A | 118 | Thioredoxin, thioredoxin H isoform 1.; oxidoreduct | 96.79 | |
| 2av4_A | 160 | Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECI | 96.79 | |
| 4euy_A | 105 | Uncharacterized protein; structural genomics, PSI- | 96.78 | |
| 1x5e_A | 126 | Thioredoxin domain containing protein 1; TMX, TXND | 96.77 | |
| 3f3q_A | 109 | Thioredoxin-1; His TAG, electron transport, cytopl | 96.74 | |
| 2fwh_A | 134 | Thiol:disulfide interchange protein DSBD; thioredo | 96.74 | |
| 2l5l_A | 136 | Thioredoxin; structural genomics, electron transpo | 96.74 | |
| 3fk8_A | 133 | Disulphide isomerase; APC61824.1, xylella fastidio | 96.73 | |
| 1zma_A | 118 | Bacterocin transport accessory protein; alpha-beta | 96.7 | |
| 2i1u_A | 121 | Thioredoxin, TRX, MPT46; redox protein, electron t | 96.7 | |
| 2vlu_A | 122 | Thioredoxin, thioredoxin H isoform 2.; oxidoreduct | 96.69 | |
| 3bj5_A | 147 | Protein disulfide-isomerase; thioredoxin fold, cha | 96.68 | |
| 1ti3_A | 113 | Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul | 96.67 | |
| 2djj_A | 121 | PDI, protein disulfide-isomerase; thioredoxin fold | 96.66 | |
| 1fb6_A | 105 | Thioredoxin M; electron transport; 2.10A {Spinacia | 96.66 | |
| 2c0g_A | 248 | ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, | 96.65 | |
| 1qgv_A | 142 | Spliceosomal protein U5-15KD; snRNP, thioredoxin, | 96.64 | |
| 2trc_P | 217 | Phosducin, MEKA, PP33; transducin, beta-gamma, sig | 96.64 | |
| 1t00_A | 112 | Thioredoxin, TRX; redox regulation, multifunction | 96.62 | |
| 3d6i_A | 112 | Monothiol glutaredoxin-3; thioredoxin-like, electr | 96.62 | |
| 2b5x_A | 148 | YKUV protein, TRXY; thioredoxin-like, oxidoreducta | 96.58 | |
| 2kuc_A | 130 | Putative disulphide-isomerase; structural genomics | 96.58 | |
| 2o8v_B | 128 | Thioredoxin 1; disulfide crosslinked complex, oxid | 96.53 | |
| 1wmj_A | 130 | Thioredoxin H-type; structural genomics, program f | 96.53 | |
| 3aps_A | 122 | DNAJ homolog subfamily C member 10; thioredoxin fo | 96.52 | |
| 1lu4_A | 136 | Soluble secreted antigen MPT53; thioredoxin-like f | 96.51 | |
| 1a0r_P | 245 | Phosducin, MEKA, PP33; transducin, beta-gamma, sig | 96.48 | |
| 3iv4_A | 112 | Putative oxidoreductase; APC23140, meticillin-resi | 96.36 | |
| 1v98_A | 140 | Thioredoxin; oxidoreductase, structural genomics, | 96.35 | |
| 1zzo_A | 136 | RV1677; thioredoxin fold, structural genomics, PSI | 96.32 | |
| 3cxg_A | 133 | Putative thioredoxin; malaria, structural GEN oxid | 96.3 | |
| 2hls_A | 243 | Protein disulfide oxidoreductase; thioredoxin fold | 96.3 | |
| 2dj0_A | 137 | Thioredoxin-related transmembrane protein 2; AVLA2 | 96.29 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 96.27 | |
| 3raz_A | 151 | Thioredoxin-related protein; structural genomics, | 96.23 | |
| 2f51_A | 118 | Thioredoxin; electron transport; 1.90A {Trichomona | 96.1 | |
| 3d22_A | 139 | TRXH4, thioredoxin H-type; electron transport, cyt | 96.09 | |
| 1hyu_A | 521 | AHPF, alkyl hydroperoxide reductase subunit F; thi | 96.08 | |
| 2l6c_A | 110 | Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu | 96.08 | |
| 3iv4_A | 112 | Putative oxidoreductase; APC23140, meticillin-resi | 96.07 | |
| 1wou_A | 123 | Thioredoxin -related protein, 14 kDa; electron tra | 96.07 | |
| 2l4c_A | 124 | Endoplasmic reticulum resident protein 27; ERP27, | 96.03 | |
| 3or5_A | 165 | Thiol:disulfide interchange protein, thioredoxin p | 96.03 | |
| 2fwh_A | 134 | Thiol:disulfide interchange protein DSBD; thioredo | 96.03 | |
| 1wmj_A | 130 | Thioredoxin H-type; structural genomics, program f | 96.02 | |
| 1fo5_A | 85 | Thioredoxin; disulfide oxidoreductase, structural | 95.99 | |
| 1nho_A | 85 | Probable thioredoxin; beta sheet, alpha helix, oxi | 95.99 | |
| 2dj3_A | 133 | Protein disulfide-isomerase A4; protein ERP-72, ER | 95.98 | |
| 3gix_A | 149 | Thioredoxin-like protein 4B; PRE-mRNA splicing, TX | 95.94 | |
| 2lja_A | 152 | Putative thiol-disulfide oxidoreductase; structura | 95.87 | |
| 1oaz_A | 123 | Thioredoxin 1; immune system, antibody/complex, an | 95.87 | |
| 2l57_A | 126 | Uncharacterized protein; structural genomics, unkn | 95.77 | |
| 2f9s_A | 151 | Thiol-disulfide oxidoreductase RESA; thioredoxin-l | 95.76 | |
| 2dj0_A | 137 | Thioredoxin-related transmembrane protein 2; AVLA2 | 95.73 | |
| 2l5o_A | 153 | Putative thioredoxin; structural genomics, unknown | 95.71 | |
| 3ia1_A | 154 | THIO-disulfide isomerase/thioredoxin; oxidoreducta | 95.68 | |
| 2lrn_A | 152 | Thiol:disulfide interchange protein; structural ge | 95.67 | |
| 3dxb_A | 222 | Thioredoxin N-terminally fused to PUF60(UHM); spli | 95.62 | |
| 3t58_A | 519 | Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2. | 95.6 | |
| 3ul3_B | 128 | Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; | 95.57 | |
| 3erw_A | 145 | Sporulation thiol-disulfide oxidoreductase A; thio | 95.56 | |
| 3ha9_A | 165 | Uncharacterized thioredoxin-like protein; PSI, MCS | 95.52 | |
| 1qgv_A | 142 | Spliceosomal protein U5-15KD; snRNP, thioredoxin, | 95.44 | |
| 2pu9_C | 111 | TRX-F, thioredoxin F-type, chloroplast; protein-pr | 95.39 | |
| 3gl3_A | 152 | Putative thiol:disulfide interchange protein DSBE; | 95.37 | |
| 2trc_P | 217 | Phosducin, MEKA, PP33; transducin, beta-gamma, sig | 95.36 | |
| 3evi_A | 118 | Phosducin-like protein 2; alpha beta, 3-layer(ABA) | 95.27 | |
| 2dbc_A | 135 | PDCL2, unnamed protein product; phosducin-like pro | 95.24 | |
| 1a0r_P | 245 | Phosducin, MEKA, PP33; transducin, beta-gamma, sig | 95.13 | |
| 1un2_A | 197 | DSBA, thiol-disulfide interchange protein; disulfi | 95.02 | |
| 1faa_A | 124 | Thioredoxin F; electron transport; 1.85A {Spinacia | 94.99 | |
| 3kcm_A | 154 | Thioredoxin family protein; SGX, thioredoxin prote | 94.97 | |
| 3cxg_A | 133 | Putative thioredoxin; malaria, structural GEN oxid | 94.88 | |
| 3fkf_A | 148 | Thiol-disulfide oxidoreductase; structural genomic | 94.83 | |
| 3lor_A | 160 | Thiol-disulfide isomerase and thioredoxins; PSI, M | 94.73 | |
| 4evm_A | 138 | Thioredoxin family protein; structural genomics, n | 94.49 | |
| 3emx_A | 135 | Thioredoxin; structural genomics, oxidoreductase, | 94.32 | |
| 2ju5_A | 154 | Thioredoxin disulfide isomerase; protein, oxidored | 94.24 | |
| 3eyt_A | 158 | Uncharacterized protein SPOA0173; thioredoxin-like | 94.24 | |
| 2kuc_A | 130 | Putative disulphide-isomerase; structural genomics | 94.0 | |
| 3fk8_A | 133 | Disulphide isomerase; APC61824.1, xylella fastidio | 93.97 | |
| 2yj7_A | 106 | LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti | 92.86 | |
| 1fo5_A | 85 | Thioredoxin; disulfide oxidoreductase, structural | 93.59 | |
| 2lst_A | 130 | Thioredoxin; structural genomics, NEW YORK structu | 92.45 | |
| 3fw2_A | 150 | Thiol-disulfide oxidoreductase; structural genomic | 93.29 | |
| 1nho_A | 85 | Probable thioredoxin; beta sheet, alpha helix, oxi | 93.16 | |
| 3lwa_A | 183 | Secreted thiol-disulfide isomerase; thioredoxin, P | 93.15 | |
| 1jfu_A | 186 | Thiol:disulfide interchange protein TLPA; thioredo | 93.1 | |
| 3hdc_A | 158 | Thioredoxin family protein; ATCC53774, DSM 7210, , | 92.97 | |
| 3qcp_A | 470 | QSOX from trypanosoma brucei (tbqsox); ERV fold, t | 92.75 | |
| 2h30_A | 164 | Thioredoxin, peptide methionine sulfoxide reductas | 92.67 | |
| 3hcz_A | 148 | Possible thiol-disulfide isomerase; APC61559.2, cy | 92.46 | |
| 1kng_A | 156 | Thiol:disulfide interchange protein CYCY; thioredo | 92.41 | |
| 2cvb_A | 188 | Probable thiol-disulfide isomerase/thioredoxin; re | 92.36 | |
| 1sen_A | 164 | Thioredoxin-like protein P19; endoplasmic reticulu | 92.3 | |
| 2ywi_A | 196 | Hypothetical conserved protein; uncharacterized co | 91.98 | |
| 1z6n_A | 167 | Hypothetical protein PA1234; alpha-beta-alpha sand | 91.91 | |
| 1ilo_A | 77 | Conserved hypothetical protein MTH895; beta-alpha- | 91.24 | |
| 3f9u_A | 172 | Putative exported cytochrome C biogenesis-related; | 91.15 | |
| 2b1k_A | 168 | Thiol:disulfide interchange protein DSBE; C-termin | 91.08 | |
| 3u5r_E | 218 | Uncharacterized protein; structural genomics, PSI- | 90.86 | |
| 3ewl_A | 142 | Uncharacterized conserved protein BF1870; alpha-be | 90.69 | |
| 1ilo_A | 77 | Conserved hypothetical protein MTH895; beta-alpha- | 90.5 | |
| 3kh7_A | 176 | Thiol:disulfide interchange protein DSBE; TRX-like | 89.67 | |
| 3qcp_A | 470 | QSOX from trypanosoma brucei (tbqsox); ERV fold, t | 89.62 | |
| 3eur_A | 142 | Uncharacterized protein; PSI2,MCSG, conserved prot | 88.46 | |
| 4fo5_A | 143 | Thioredoxin-like protein; AHPC/TSA family protein, | 88.37 | |
| 2lrt_A | 152 | Uncharacterized protein; structural genomics, thio | 88.21 | |
| 3ira_A | 173 | Conserved protein; methanosarcina mazei,structural | 87.5 | |
| 2hyx_A | 352 | Protein DIPZ; thioredoxin fold, jelly-roll, struct | 87.45 | |
| 1i5g_A | 144 | Tryparedoxin II; electron transport; HET: TS5; 1.4 | 87.04 | |
| 1o8x_A | 146 | Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot | 86.68 | |
| 3s9f_A | 165 | Tryparedoxin; thioredoxin fold, disulfide reductas | 86.67 | |
| 1o73_A | 144 | Tryparedoxin; electron transport, trypanosomatid, | 86.18 | |
| 2b5x_A | 148 | YKUV protein, TRXY; thioredoxin-like, oxidoreducta | 85.92 | |
| 4evm_A | 138 | Thioredoxin family protein; structural genomics, n | 83.46 | |
| 1lu4_A | 136 | Soluble secreted antigen MPT53; thioredoxin-like f | 83.02 | |
| 2rli_A | 171 | SCO2 protein homolog, mitochondrial; copper protei | 83.02 | |
| 3drn_A | 161 | Peroxiredoxin, bacterioferritin comigratory prote | 82.17 | |
| 3ia1_A | 154 | THIO-disulfide isomerase/thioredoxin; oxidoreducta | 81.49 | |
| 2bmx_A | 195 | Alkyl hydroperoxidase C; peroxiredoxin, antioxidan | 81.35 | |
| 2f9s_A | 151 | Thiol-disulfide oxidoreductase RESA; thioredoxin-l | 80.94 | |
| 2lst_A | 130 | Thioredoxin; structural genomics, NEW YORK structu | 81.72 |
| >3ec3_A Protein disulfide-isomerase A4; thioredoxin-like fold, endoplasmic reticulum, glycoprotein, redox-active center; 1.92A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-34 Score=258.23 Aligned_cols=224 Identities=14% Similarity=0.201 Sum_probs=179.2
Q ss_pred hcCCCceecCChHHHHHHHHh-cCCcccEEEEecCC-----hhHHHHHHHhhcCceeEEeecccchhhHhhcCCCCCCeE
Q 020623 24 FVAPDVSILNSDAEVSDFVEN-AGTFFPLFIGFGLD-----ESVMSNLALKYKKKAWFAVAKDFSEDTMVLYDFDKVPAL 97 (323)
Q Consensus 24 ~~~p~v~~i~s~~~l~~fl~~-~~~~~~~vVgf~~~-----~~~f~~~A~~~~~~~~F~~~~~~~~~~~~~~~~~~~p~i 97 (323)
+++|+|+.|+|.+++++|++. ++ +++|||+.+ .+.|.++|..+++++.|+++ .+++++.+++++ .|+|
T Consensus 3 ~~gP~v~~l~s~~~~~~~~~~~~~---v~vVgff~~~~~~~~~~F~~~A~~lr~~~~F~~t--~~~~v~~~~~v~-~p~i 76 (250)
T 3ec3_A 3 LGSPPSKEILTLKQVQEFLKDGDD---VVILGVFQGVGDPGYLQYQDAANTLREDYKFHHT--FSTEIAKFLKVS-LGKL 76 (250)
T ss_dssp --CCSSEECCCHHHHHHHHHHCSS---CEEEEECSCTTCHHHHHHHHHHHHHTTTCCEEEE--CCHHHHHHHTCC-SSEE
T ss_pred CCCCCceecCCHHHHHHHHhcCCC---eEEEEEEcCCCchHHHHHHHHHHhhhcCcEEEEE--CcHHHHHHcCCC-CCeE
Confidence 689999999999999999998 77 489999864 24789999999999999998 577899899985 5999
Q ss_pred EEecCC------CCCCcccc--CCCCHHHHHHHHHhhcCCCeeecChhhHHHhhcCCCcEEEEEEeCC---C-hhHHHHH
Q 020623 98 VALQPS------YNEHNIFY--GPFDEEFLEEFIKQNFLPLSVPINQDTLNLLKDDKRKIVLAIVEDE---T-EEKSQKL 165 (323)
Q Consensus 98 vv~k~~------~~~~~~y~--g~~~~~~L~~fI~~~~~Plv~~~t~~~~~~~~~~~~~~v~~f~~~~---~-~e~~~~~ 165 (323)
++||+. ++....|+ |+++.++|.+||+.+++|+|+++|.+|+..++ .++|++++|+..+ + .+..+.+
T Consensus 77 vlfk~~~~~~kfde~~~~y~g~~~~~~~~l~~fi~~~~~Plv~e~t~~n~~~~~-~~~~l~~~~~~~d~~~~~~~~~~~~ 155 (250)
T 3ec3_A 77 VLMQPEKFQSKYEPRMHVMDVQGSTEASAIKDYVVKHALPLVGHRKTSNDAKRY-SKRPLVVVYYSVDFSFDYRTATQFW 155 (250)
T ss_dssp EEECCGGGCCTTSCSCEEEECCTTSCHHHHHHHHHHHSSCTEEEECTTTHHHHS-CSSSEEEEEECCCCSTTTHHHHHHH
T ss_pred EEEecchhhccccccceeccCCCCCCHHHHHHHHHHcCCCceeecCccchhhhh-ccCccEEEEEecccccccchhHHHH
Confidence 999962 34567888 47999999999999999999999999999988 4789998888532 1 3445678
Q ss_pred HHHHHHHHHhCCCeEEEEEcCcchhhHhhhcCCcCCCCC-CeEEEEeCC-cceeeccCCCCCCCCCCHHHHHHHHHHHHc
Q 020623 166 VTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKL-PKMVVWDGN-ENYLTVIGSESIDEEDQGSQISRFLEGYRE 243 (323)
Q Consensus 166 ~~~l~~~A~~~~~l~F~~vd~~~~~~~~~~~gl~~~~~~-P~ivI~~~~-~kY~~~~~~~~~~~~~t~~~I~~Fi~~~~~ 243 (323)
++.++++|++|+.++|+|+|+.++++.+++||+ +..+. |.+++++.+ .||.++ .+++|.++|.+|+++|++
T Consensus 156 ~~~~~~vAk~~kki~F~~~d~~~~~~~l~~fgl-~~~~~~p~~~~~~~~~~ky~~~------~~~~t~~~i~~Fv~~~~~ 228 (250)
T 3ec3_A 156 RNKVLEVAKDFPEYTFAIADEEDYATEVKDLGL-SESGGDVNAAILDESGKKFAME------PEEFDSDALREFVMAFKK 228 (250)
T ss_dssp HHHHHHHHTTCTTSEEEEEETTTTHHHHHHTTC-SSCSCSCEEEEECTTSCEEECC------CCSCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhcceeEEEEcHHHHHHHHHHcCC-CccCCCcEEEEEcCCCceecCC------cccCCHHHHHHHHHHHHC
Confidence 899999999999999999999999999999999 54444 688888864 477664 246899999999999999
Q ss_pred CcccccccCC--CCCC-CCee
Q 020623 244 GRTEQKKVAG--PSIF-GFVN 261 (323)
Q Consensus 244 Gkl~~~~kSe--P~~~-g~v~ 261 (323)
|+++|++||| |+.+ |+|.
T Consensus 229 Gkl~p~~kSepiPe~~~~pV~ 249 (250)
T 3ec3_A 229 GKLKPVIKSQPVPKNNKGAAA 249 (250)
T ss_dssp TCCCCCC--------------
T ss_pred CCccceeecCCCCCCCCCCCC
Confidence 9999999999 7766 8775
|
| >2h8l_A Protein disulfide-isomerase A3; thioredoxin-like fold; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-34 Score=255.91 Aligned_cols=225 Identities=18% Similarity=0.298 Sum_probs=174.1
Q ss_pred HhcCCCceecCChHHHHHHHHhcCCcccEEEEecCC--h---hHHHHHHHhhcCceeEEeecccchhhHhhcCCCCCCeE
Q 020623 23 KFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFGLD--E---SVMSNLALKYKKKAWFAVAKDFSEDTMVLYDFDKVPAL 97 (323)
Q Consensus 23 k~~~p~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--~---~~f~~~A~~~~~~~~F~~~~~~~~~~~~~~~~~~~p~i 97 (323)
++++|+|+.|+|.+++++|++.++ +++|||+.+ + +.|.++|..+++++.|+++ .+++++.+++++ .|+|
T Consensus 2 ~~~gP~v~~l~s~~~~~~~l~~~~---v~vvgff~~~~~~~~~~f~~~A~~lr~~~~F~~~--~~~~v~~~~~~~-~p~i 75 (252)
T 2h8l_A 2 PLGSPASVPLRTEEEFKKFISDKD---ASIVGFFDDSFSEAHSEFLKAASNLRDNYRFAHT--NVESLVNEYDDN-GEGI 75 (252)
T ss_dssp ----CCEEECCSHHHHHHHHTSSS---CEEEEEESCTTSHHHHHHHHHHHHTTTTSCEEEE--CCHHHHHHHCSS-SEEE
T ss_pred CcCCCCceeecCHHHHHHHhhcCC---eEEEEEECCCCChHHHHHHHHHHhcccCcEEEEE--ChHHHHHHhCCC-CCcE
Confidence 689999999999999999999887 479998764 2 4788999999999999998 567899999986 5999
Q ss_pred EEecCC------CCCCccc-cCCCCHHHHHHHHHhhcCCCeeecChhhHHHhhcCCCcEEEEEEeCCC---hhHHHHHHH
Q 020623 98 VALQPS------YNEHNIF-YGPFDEEFLEEFIKQNFLPLSVPINQDTLNLLKDDKRKIVLAIVEDET---EEKSQKLVT 167 (323)
Q Consensus 98 vv~k~~------~~~~~~y-~g~~~~~~L~~fI~~~~~Plv~~~t~~~~~~~~~~~~~~v~~f~~~~~---~e~~~~~~~ 167 (323)
++||+. ++....| .|+++.++|.+||+.+++|+|+++|.+|+..++. .|++++|+..+. .+..+.+.+
T Consensus 76 ~~fk~~~~~~kf~e~~~~y~~g~~~~~~l~~fi~~~~~Plv~e~t~~n~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~ 153 (252)
T 2h8l_A 76 ILFRPSHLTNKFEDKTVAYTEQKMTSGKIKKFIQENIFGICPHMTEDNKDLIQG--KDLLIAYYDVDYEKNAKGSNYWRN 153 (252)
T ss_dssp EEECCGGGCCTTSCSEEECCCSSCCHHHHHHHHHHHSSCSSCEECTTTHHHHSS--SSEEEEEECCBTTTBHHHHHHHHH
T ss_pred EEEcchhhcccccccccccCCCCcCHHHHHHHHHhcccCCeeecccccHhhhcC--CCeEEEEeecchhhcchhHHHHHH
Confidence 999962 2455689 8999999999999999999999999999999854 577777775322 123446889
Q ss_pred HHHHHHHhCCC----eEEEEEcCcchhhHhhhcCCc-CCCCCCeEEEEeCC-cceeeccCCCCCCCCCCHHH--HHHHHH
Q 020623 168 TLKAAASANRE----LVFCYVGIKQFADFADTFEAN-KKSKLPKMVVWDGN-ENYLTVIGSESIDEEDQGSQ--ISRFLE 239 (323)
Q Consensus 168 ~l~~~A~~~~~----l~F~~vd~~~~~~~~~~~gl~-~~~~~P~ivI~~~~-~kY~~~~~~~~~~~~~t~~~--I~~Fi~ 239 (323)
.++++|++|++ ++|+|+|+..+++++++||++ +..++|+++|++.. .+|.+. ++++.++ |.+|++
T Consensus 154 ~~~~vA~~~~~k~~~~~F~~~d~~~~~~~~~~fgl~~~~~~~P~v~i~~~~~~ky~~~-------~~~t~~~~~i~~F~~ 226 (252)
T 2h8l_A 154 RVMMVAKKFLDAGHKLNFAVASRKTFSHELSDFGLESTAGEIPVVAIRTAKGEKFVMQ-------EEFSRDGKALERFLQ 226 (252)
T ss_dssp HHHHHHHHHHHTTCCCEEEEEETTTTHHHHGGGTCCCCSCSSCEEEEECTTSCEEECC-------SCCCTTSHHHHHHHH
T ss_pred HHHHHHHHccccCceEEEEEEchHHHHHHHHHcCCCCccCCCCEEEEEeCcCcEecCC-------cccCcchHHHHHHHH
Confidence 99999999873 999999999999999999992 12689999999874 466542 2577777 999999
Q ss_pred HHHcCcccccccCC--CCCC-CCeeE
Q 020623 240 GYREGRTEQKKVAG--PSIF-GFVNS 262 (323)
Q Consensus 240 ~~~~Gkl~~~~kSe--P~~~-g~v~~ 262 (323)
+|++|+++|++||| |+.+ |+|+.
T Consensus 227 ~~~~Gkl~~~~kSe~iPe~~~~pV~~ 252 (252)
T 2h8l_A 227 DYFDGNLKRYLKSEPIPESNDGAAAS 252 (252)
T ss_dssp HHHHTCSCCCC---------------
T ss_pred HHHCCCccccccCCCCCCCCCCCCCC
Confidence 99999999999999 7766 98873
|
| >3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-31 Score=252.07 Aligned_cols=237 Identities=15% Similarity=0.248 Sum_probs=196.7
Q ss_pred CCcccccCCCCChHHHHHHHHHhcCCCceecCChHHHHHHHH-hcCCcccEEEEecCC--h---hHHHHHHHhhcCceeE
Q 020623 2 HGIPTEYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVE-NAGTFFPLFIGFGLD--E---SVMSNLALKYKKKAWF 75 (323)
Q Consensus 2 ~G~~~eY~G~R~a~~Iv~~l~k~~~p~v~~i~s~~~l~~fl~-~~~~~~~~vVgf~~~--~---~~f~~~A~~~~~~~~F 75 (323)
+|++.+|.|+|+++.|++|++++++|++..|++.+++++|++ +++ +++|||+.+ + ..|.++|..+++++.|
T Consensus 100 ~G~~~~y~G~~~~~~i~~~i~~~~~~~v~~i~~~~~~~~~~~~~~~---~~vv~ff~~~~~~~~~~f~~~A~~~~~~~~F 176 (367)
T 3us3_A 100 EDEVIEYDGEFSADTLVEFLLDVLEDPVELIEGERELQAFENIEDE---IKLIGYFKNKDSEHYKAFKEAAEEFHPYIPF 176 (367)
T ss_dssp TTEEEECCSCCSHHHHHHHHHHHHSCSEEECCSHHHHHHHHHCCSS---CEEEEECSCTTCHHHHHHHHHHHHHTTTSCE
T ss_pred CCcEEEeCCCCCHHHHHHHHHHhcCCCcEEcCCHHHHHHHhccCCC---cEEEEEECCCCchHHHHHHHHHHhhcCCcEE
Confidence 578889999999999999999999999999999999999998 555 579998753 2 3788999999999999
Q ss_pred EeecccchhhHhhcCCCCCCeEEEecCCCCCCccccCC-CCHHHHHHHHHhhcCCCeeecChhhHHHhhcC--CCcEEEE
Q 020623 76 AVAKDFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGP-FDEEFLEEFIKQNFLPLSVPINQDTLNLLKDD--KRKIVLA 152 (323)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~p~ivv~k~~~~~~~~y~g~-~~~~~L~~fI~~~~~Plv~~~t~~~~~~~~~~--~~~~v~~ 152 (323)
+++ .+++++.++++. .|+|++|++..+....|.|. ++.++|.+||+.+++|+|+++|.+|+..++.+ .++++++
T Consensus 177 ~~~--~~~~~~~~~~v~-~p~i~lf~~~~~~~~~y~g~~~~~~~l~~fi~~~~~p~v~elt~~~~~~~~~~~~~~~~~~~ 253 (367)
T 3us3_A 177 FAT--FDSKVAKKLTLK-LNEIDFYEAFMEEPVTIPDKPNSEEEIVNFVEEHRRSTLRKLKPESMYETWEDDMDGIHIVA 253 (367)
T ss_dssp EEE--CCHHHHHHHTCC-TTCEEEECTTCSSCEECSSSSCCHHHHHHHHHHTCSCSEEECCGGGHHHHHHSCBTTEEEEE
T ss_pred EEE--CCHHHHHHcCCC-CCeEEEEcCCCCCCeecCCCCCCHHHHHHHHHHcCccceeecChhhHHHHHhhccCCcEEEE
Confidence 988 467889999985 69999999865667789884 89999999999999999999999999887764 3467777
Q ss_pred EEeCCChhHHHHHHHHHHHHHHhCCC---eEEEEEcCcchhhHh----hhcCCcCCCCCCeEEEEeCC-c--ceeeccCC
Q 020623 153 IVEDETEEKSQKLVTTLKAAASANRE---LVFCYVGIKQFADFA----DTFEANKKSKLPKMVVWDGN-E--NYLTVIGS 222 (323)
Q Consensus 153 f~~~~~~e~~~~~~~~l~~~A~~~~~---l~F~~vd~~~~~~~~----~~~gl~~~~~~P~ivI~~~~-~--kY~~~~~~ 222 (323)
|++. +.+...++++.|+++|++|++ ++|+|+|+..+++.+ +.||+ + .++|+++|++.. + +|+.+++.
T Consensus 254 f~~~-~~~~~~~~~~~l~~vA~~~~~~~ki~F~~id~~~~~~~l~~~~~~fgl-~-~~~P~~~i~~~~~~~~~~y~~~~~ 330 (367)
T 3us3_A 254 FAEE-ADPDGYEFLEILKSVAQDNTDNPDLSIIWIDPDDFPLLVPYWEKTFDI-D-LSAPQIGVVNVTDADSVWMEMDDE 330 (367)
T ss_dssp ECCT-TSHHHHHHHHHHHHHHHHTTTCTTCCEEEECGGGCTTTHHHHHHHHTC-C-TTSCEEEEEETTTCCEEECCCCTT
T ss_pred EEcC-CChhHHHHHHHHHHHHHHcCCCCceEEEEECCccchhHHHHHHHhcCC-C-CCCCeEEEEecccccceeecCCcc
Confidence 7764 334567899999999999995 999999999887655 45999 5 579999999973 3 34433210
Q ss_pred CCCCCCCCHHHHHHHHHHHHcCcccccc
Q 020623 223 ESIDEEDQGSQISRFLEGYREGRTEQKK 250 (323)
Q Consensus 223 ~~~~~~~t~~~I~~Fi~~~~~Gkl~~~~ 250 (323)
.+++|.++|.+|+++|++|+++|.-
T Consensus 331 ---~~~~t~~~i~~F~~~~~~Gkl~p~~ 355 (367)
T 3us3_A 331 ---EDLPSAEELEDWLEDVLEGEINTED 355 (367)
T ss_dssp ---SCCCCHHHHHHHHHHHHHTSSCC--
T ss_pred ---cccCCHHHHHHHHHHHHcCCcCccc
Confidence 1368999999999999999999964
|
| >3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-32 Score=266.47 Aligned_cols=272 Identities=18% Similarity=0.266 Sum_probs=224.2
Q ss_pred CC-cccccCCCCChHHHHHHHHHhcCCCceecCChHHHHHHHHhcCCcccEEEEecCC-----hhHHHHHHHhhcCceeE
Q 020623 2 HG-IPTEYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFGLD-----ESVMSNLALKYKKKAWF 75 (323)
Q Consensus 2 ~G-~~~eY~G~R~a~~Iv~~l~k~~~p~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~-----~~~f~~~A~~~~~~~~F 75 (323)
+| .+..|.|+|+++.|++|+.++++|++..+.+.++++++++.++ +++|||+.+ ...|.++|..+++++.|
T Consensus 84 ~g~~~~~~~G~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~---~~vv~~~~~~~~~~~~~f~~~a~~~~~~~~F 160 (481)
T 3f8u_A 84 DGEEAGAYDGPRTADGIVSHLKKQAGPASVPLRTEEEFKKFISDKD---ASIVGFFDDSFSEAHSEFLKAASNLRDNYRF 160 (481)
T ss_dssp TTEEEEECCSCSSHHHHHHHHHHHTSCSEEEECSHHHHHHHTTSSS---CEEEEEESCTTCHHHHHHHHHHHHHTTTSCE
T ss_pred CCceeeeecCccCHHHHHHHHHhhcccCceecCCHHHHHHHHhcCC---cEEEEEECCCccchHHHHHHHHHHhccCceE
Confidence 56 4678999999999999999999999999999999999999887 478998743 24788999999999999
Q ss_pred EeecccchhhHhhcCCCCCCeEEEec------CCCCCCcccc-CCCCHHHHHHHHHhhcCCCeeecChhhHHHhhcCCCc
Q 020623 76 AVAKDFSEDTMVLYDFDKVPALVALQ------PSYNEHNIFY-GPFDEEFLEEFIKQNFLPLSVPINQDTLNLLKDDKRK 148 (323)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~p~ivv~k------~~~~~~~~y~-g~~~~~~L~~fI~~~~~Plv~~~t~~~~~~~~~~~~~ 148 (323)
+++ .+++++.++++. .+.|++|+ +..+....|. |.++.++|.+||+.+++|+|+++|.+|+..++. .|
T Consensus 161 ~~~--~~~~~~~~~~v~-~~~i~~~~p~~~~~~~~~~~~~y~~~~~~~~~l~~fi~~~~~p~v~e~t~~n~~~~~~--~~ 235 (481)
T 3f8u_A 161 AHT--NVESLVNEYDDN-GEGIILFRPSHLTNKFEDKTVAYTEQKMTSGKIKKFIQENIFGICPHMTEDNKDLIQG--KD 235 (481)
T ss_dssp EEE--CCHHHHHHHCSS-SEEEEEECCGGGCBTTBCSEEECCCSSCCHHHHHHHHHHHTTTTSCEECTTTHHHHTT--SS
T ss_pred EEE--CCHHHHHHhCCC-CCcEEEEecccccCccCCcccccCCCCCCHHHHHHHHHHhCCCCccccChhHHHHhcC--CC
Confidence 988 577889999985 45699998 3233456788 789999999999999999999999999999985 56
Q ss_pred EEEEEEeCCC---hhHHHHHHHHHHHHHHhCCC----eEEEEEcCcchhhHhhhcCCcC--CCCCCeEEEEeCCc-ceee
Q 020623 149 IVLAIVEDET---EEKSQKLVTTLKAAASANRE----LVFCYVGIKQFADFADTFEANK--KSKLPKMVVWDGNE-NYLT 218 (323)
Q Consensus 149 ~v~~f~~~~~---~e~~~~~~~~l~~~A~~~~~----l~F~~vd~~~~~~~~~~~gl~~--~~~~P~ivI~~~~~-kY~~ 218 (323)
++++|+..+. .+..+.+.+.++++|++|++ ++|+|+|...+++++++||+ + ..++|.++|.+.++ +|.+
T Consensus 236 ~~v~~~~~~~~~~~~~~~~~~~~~~~vA~~~~~k~~~i~F~~~D~~~~~~~l~~~gl-~~~~~~~P~~~i~~~~~~ky~~ 314 (481)
T 3f8u_A 236 LLIAYYDVDYEKNAKGSNYWRNRVMMVAKKFLDAGHKLNFAVASRKTFSHELSDFGL-ESTAGEIPVVAIRTAKGEKFVM 314 (481)
T ss_dssp EEEEEECCCTTTCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEETTTTHHHHGGGTC-CCCTTCSCEEEEECSSSCEEEC
T ss_pred ceEEEEecccccchhhHHHHHHHHHHHHHHhcCCCceEEEEEEcHHHHHHHHHHcCC-CcccCCCcEEEEEcCCCcccCC
Confidence 7766665321 12223467889999999874 99999999999999999999 5 45899999998644 6755
Q ss_pred ccCCCCCCCCCCHH--HHHHHHHHHHcCcccccccCC--CCCC-CCeeEEeccCcceehHH--HHHHHHHHHHhcCCC
Q 020623 219 VIGSESIDEEDQGS--QISRFLEGYREGRTEQKKVAG--PSIF-GFVNSLIGIRSVYIIVF--MVAMLMLLRTLGKDD 289 (323)
Q Consensus 219 ~~~~~~~~~~~t~~--~I~~Fi~~~~~Gkl~~~~kSe--P~~~-g~v~~vVg~~~~~iv~~--~~~~~~~~~~~~~~~ 289 (323)
. ++++.+ +|.+|++++++|+++++++|+ |..+ ++++.++|.+|..++.- -..++.+..+||++|
T Consensus 315 ~-------~~~t~e~~~l~~f~~~~~~g~~~~~~~s~~~p~~~~~~v~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C 385 (481)
T 3f8u_A 315 Q-------EEFSRDGKALERFLQDYFDGNLKRYLKSEPIPESNDGPVKVVVAENFDEIVNNENKDVLIEFYAPWCGHC 385 (481)
T ss_dssp C-------SCCCTTSHHHHHHHHHHHHTCCCCCCCCCCCCSCCCSSSEEECTTTHHHHHTCTTCEEEEEEECTTBHHH
T ss_pred C-------cccCccHHHHHHHHHHHhcCCcccccccCCCCCCCCCCeEEecccCHHHHhhcCCCcEEEEEecCcChhH
Confidence 2 357888 999999999999999999999 5544 89999999998877653 245666778899988
|
| >2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-30 Score=246.96 Aligned_cols=242 Identities=14% Similarity=0.205 Sum_probs=177.9
Q ss_pred CCccc--ccCCCCChHHHHHHHHHhcCCCceecCChHHHHHHHHhcCCcccEEEEecCC--h---hHHHHHHHhhcCcee
Q 020623 2 HGIPT--EYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFGLD--E---SVMSNLALKYKKKAW 74 (323)
Q Consensus 2 ~G~~~--eY~G~R~a~~Iv~~l~k~~~p~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--~---~~f~~~A~~~~~~~~ 74 (323)
+|... +|.|.|+++.|++|+.++++|++..|++.++++. +..++ +++|||+.+ . ..|.++|..+++++.
T Consensus 91 ~G~~~~~~~~G~~~~~~l~~~i~~~~~~~v~~l~~~~~l~~-l~~~~---~~~v~ff~~~~~~~~~~f~~~A~~~~~~~~ 166 (382)
T 2r2j_A 91 NGMMMKREYRGQRSVKALADYIRQQKSDPIQEIRDLAEITT-LDRSK---RNIIGYFEQKDSDNYRVFERVANILHDDCA 166 (382)
T ss_dssp TTEEEEEECCSCCSHHHHHHHHHHHHSCCCEEC-------------C---CEEEEEESCSSSHHHHHHHHHHHHHTTTCE
T ss_pred CCcEeeeeecCcchHHHHHHHHHHhccCCceecCCHHHHHH-hcCCC---CEEEEEECCCCChhHHHHHHHHHHhhccce
Confidence 56643 7999999999999999999999999988888988 55555 478998753 2 368899999999999
Q ss_pred EEeecccchhhHhhcCCCCCCeEEEecCCC--CCCccccCCC-CHHHHHHHHHhhcCCCeeecChhhHHHhhcCCCcEEE
Q 020623 75 FAVAKDFSEDTMVLYDFDKVPALVALQPSY--NEHNIFYGPF-DEEFLEEFIKQNFLPLSVPINQDTLNLLKDDKRKIVL 151 (323)
Q Consensus 75 F~~~~~~~~~~~~~~~~~~~p~ivv~k~~~--~~~~~y~g~~-~~~~L~~fI~~~~~Plv~~~t~~~~~~~~~~~~~~v~ 151 (323)
|+++. + +++..+++.+.| ++|++.. +....|.|++ +.++|.+||..+++|+++++|.+|+..++..++|+++
T Consensus 167 F~~~~--~-~~~~~~~v~~~p--i~~~~~~~~~~~~~y~g~~~~~~~l~~fi~~~~~p~v~elt~~~~~~~~~~~~~~~v 241 (382)
T 2r2j_A 167 FLSAF--G-DVSKPERYSGDN--IIYKPPGHSAPDMVYLGAMTNFDVTYNWIQDKCVPLVREITFENGEELTEEGLPFLI 241 (382)
T ss_dssp EEEEE--S-CC--------CE--EEEECSSSSSCCEECCSCTTCHHHHHHHHHHHHSCSSEECCHHHHHHHHTTCCCEEE
T ss_pred EEEEe--h-hhHHhhCCCCCc--eEECCCCCCCcCcccCCCCCCHHHHHHHHHhcccCceEecChhhHHHHhcCCCcEEE
Confidence 98873 2 566677776667 5666532 2456789998 8999999999999999999999999999988899998
Q ss_pred EEEeCCChhHHHHHHHHHHHHHHhCCC-eEEEEEcCcchhhHhhhcCCcCCCCCCeEEEEeCCcceeeccCCCCCCCCCC
Q 020623 152 AIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYLTVIGSESIDEEDQ 230 (323)
Q Consensus 152 ~f~~~~~~e~~~~~~~~l~~~A~~~~~-l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI~~~~~kY~~~~~~~~~~~~~t 230 (323)
+|+..++.+..+.+.+.+.++|.++++ ++|+|+|+..+++++++||+ +..++|+++|.+....|.++. .++.++
T Consensus 242 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~id~~~~~~~~~~~gl-~~~~~P~i~i~~~~~~y~~~~----~~~~~~ 316 (382)
T 2r2j_A 242 LFHMKEDTESLEIFQNEVARQLISEKGTINFLHADCDKFRHPLLHIQK-TPADCPVIAIDSFRHMYVFGD----FKDVLI 316 (382)
T ss_dssp EEECTTCCHHHHHHHHHHHHHTGGGTTTSEEEEEETTTTHHHHHHTTC-CGGGCSEEEEECSSCEEECCC----SGGGGS
T ss_pred EEecCCchHHHHHHHHHHHHHHHHhCCeeEEEEEchHHhHHHHHHcCC-CccCCCEEEEEcchhcCCCCc----cccccC
Confidence 888754334456677888888888988 99999999999999999999 666899999988755565431 123467
Q ss_pred HHHHHHHHHHHHcCcccccccCC--CCCC
Q 020623 231 GSQISRFLEGYREGRTEQKKVAG--PSIF 257 (323)
Q Consensus 231 ~~~I~~Fi~~~~~Gkl~~~~kSe--P~~~ 257 (323)
.++|.+|++++++|+++|++||+ |+.+
T Consensus 317 ~~~i~~F~~d~~~Gkl~p~~kse~~P~~~ 345 (382)
T 2r2j_A 317 PGKLKQFVFDLHSGKLHREFHHGPDPTDT 345 (382)
T ss_dssp TTHHHHHHHHHHHTTTSSCC---------
T ss_pred HHHHHHHHHHHHCCCccccccCCCCCCCC
Confidence 89999999999999999999999 5544
|
| >1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A | Back alignment and structure |
|---|
Probab=99.97 E-value=6.1e-29 Score=233.98 Aligned_cols=234 Identities=19% Similarity=0.286 Sum_probs=193.9
Q ss_pred CCcccccCCCCChHHHHHHHHHhcCCCceecCChHHHHHHHH-hcCCcccEEEEecCC--h---hHHHHHHHhhcCceeE
Q 020623 2 HGIPTEYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVE-NAGTFFPLFIGFGLD--E---SVMSNLALKYKKKAWF 75 (323)
Q Consensus 2 ~G~~~eY~G~R~a~~Iv~~l~k~~~p~v~~i~s~~~l~~fl~-~~~~~~~~vVgf~~~--~---~~f~~~A~~~~~~~~F 75 (323)
+|.+.+|.|+|+++.|++|++++++|++..|+|.++++++++ +++ +++|||+.+ + ..|.++|..+++++.|
T Consensus 98 ~g~~~~~~G~~~~~~l~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~---~~vv~ff~~~~~~~~~~~~~~A~~~~~~~~f 174 (350)
T 1sji_A 98 GDRTIEFDGEFAADVLVEFLLDLIEDPVEIINSKLEVQAFERIEDQ---IKLIGFFKSEESEYYKAFEEAAEHFQPYIKF 174 (350)
T ss_dssp TTEEEEECSCCCHHHHHHHHHTTSSCSEEECCSHHHHHHHHHCCSS---CEEEEECSCTTSHHHHHHHHHHHHTTTTSEE
T ss_pred CCcEEEecCCCCHHHHHHHHHHhcCCcceeccchHHHHHHhccCCC---cEEEEEECCCCcHHHHHHHHHHHhhccCcEE
Confidence 577789999999999999999999999999999999999998 666 478998753 2 4788999999999999
Q ss_pred EeecccchhhHhhcCCCCCCeEEEecCCCCCCccccCC-CCHHHHHHHHHhhcCCCeeecChhhHHHhhcCCC-cEEE-E
Q 020623 76 AVAKDFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGP-FDEEFLEEFIKQNFLPLSVPINQDTLNLLKDDKR-KIVL-A 152 (323)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~p~ivv~k~~~~~~~~y~g~-~~~~~L~~fI~~~~~Plv~~~t~~~~~~~~~~~~-~~v~-~ 152 (323)
+.+ .+++++.++++. .|+|++|++..+....|.|+ ++.++|.+||+.+++|+|+++|.+|+..++..+. ++++ +
T Consensus 175 ~~~--~~~~~~~~~~v~-~p~i~~~~~~~~~~~~y~g~~~~~~~l~~fi~~~~~p~v~elt~~~~~~~~~~~~~~~~~l~ 251 (350)
T 1sji_A 175 FAT--FDKGVAKKLSLK-MNEVDFYEPFMDEPIAIPDKPYTEEELVEFVKEHQRPTLRRLRPEDMFETWEDDLNGIHIVA 251 (350)
T ss_dssp EEE--CCHHHHHHHTCC-TTCEEEECTTCSSCEECSSSSCCHHHHHHHHHHHCCCSEEECCTTTHHHHHHSCSSSEEEEE
T ss_pred EEE--CCHHHHHHcCCC-CCcEEEEeCCCCCceecCCCCCCHHHHHHHHHHcCccchhhcChhhHHHHhcCCCCCcEEEE
Confidence 988 467899999997 89999999865667789887 8999999999999999999999999999987654 5543 3
Q ss_pred EEeCCChhHHHHHHHHHHHHHHhCCC---eEEEEEcCcchhhHh----hhcCCcCCCCCCeEEEEeC-Cc-ceee-ccCC
Q 020623 153 IVEDETEEKSQKLVTTLKAAASANRE---LVFCYVGIKQFADFA----DTFEANKKSKLPKMVVWDG-NE-NYLT-VIGS 222 (323)
Q Consensus 153 f~~~~~~e~~~~~~~~l~~~A~~~~~---l~F~~vd~~~~~~~~----~~~gl~~~~~~P~ivI~~~-~~-kY~~-~~~~ 222 (323)
|... +.....++.+.|+++|+++++ +.|+|+|+..+++++ +.||+ + .++|+++|++. ++ +|.+ +++.
T Consensus 252 f~~~-~~~~~~~~~~~~~~vA~~~~~~~~~~f~~id~~~~~~~~~~~~~~~gi-~-~~~P~~~i~~~~~~~~~~~~~~~~ 328 (350)
T 1sji_A 252 FAER-SDPDGYEFLEILKQVARDNTDNPDLSIVWIDPDDFPLLVAYWEKTFKI-D-LFKPQIGVVNVTDADSVWMEIPDD 328 (350)
T ss_dssp ECCT-TSHHHHHHHHHHHHHHHHGGGCSSCCEEEECGGGCHHHHHHHHHHCCS-C-TTSCEEEEEESSSSCEEESCSSCC
T ss_pred EEcC-CCccHHHHHHHHHHHHHHhCCCCceEEEEECchhhHHHHHHHHhhcCC-C-ccCCcEEEEecccccccccCCCcc
Confidence 4432 222356788999999999972 999999999888877 78999 5 57899999997 33 6753 3211
Q ss_pred CCCCCCCCHHHHHHHHHHHHcCccc
Q 020623 223 ESIDEEDQGSQISRFLEGYREGRTE 247 (323)
Q Consensus 223 ~~~~~~~t~~~I~~Fi~~~~~Gkl~ 247 (323)
+++++.++|.+|++++++|+++
T Consensus 329 ---~~~~~~~~i~~F~~d~~~Gkl~ 350 (350)
T 1sji_A 329 ---DDLPTAEELEDWIEDVLSGKIN 350 (350)
T ss_dssp ---SCCCCHHHHHHHHHHHHTSCC-
T ss_pred ---cccCCHHHHHHHHHHHhcCccC
Confidence 3468999999999999999974
|
| >3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-30 Score=244.04 Aligned_cols=254 Identities=19% Similarity=0.243 Sum_probs=210.2
Q ss_pred HHHhcCCCceecCChHHHHHHHHhcCCcccEEEEecCC--h---hHHHHHHHhhcCceeEEeecccchhhHhhcCCCCCC
Q 020623 21 LKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFGLD--E---SVMSNLALKYKKKAWFAVAKDFSEDTMVLYDFDKVP 95 (323)
Q Consensus 21 l~k~~~p~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--~---~~f~~~A~~~~~~~~F~~~~~~~~~~~~~~~~~~~p 95 (323)
++.-..+++..|+|.+++++|++.++ +++|||+.+ + ..|.++|..+ +++.|+++ .+++++.++++. .|
T Consensus 11 ~~~~~~~~~~~l~~~~~~~~~~~~~~---~~vvgff~~~~~~~~~~f~~~A~~~-~~~~F~~t--~~~~v~~~~~v~-~~ 83 (361)
T 3uem_A 11 FQGPGSEFATTLPDGAAAESLVESSE---VAVIGFFKDVESDSAKQFLQAAEAI-DDIPFGIT--SNSDVFSKYQLD-KD 83 (361)
T ss_dssp TSCCCCSSSEECCSHHHHHHHHHTSS---EEEEEECSCTTSHHHHHHHHHHHHC-SSSCEEEE--CCHHHHHHTTCS-SS
T ss_pred ecCCccccceecCCHHHHHHHHhcCC---cEEEEEEcCCCchHHHHHHHHHhcC-CCceEEEE--CcHHHHHHhCCC-CC
Confidence 33445567899999999999999988 589999753 1 4788999988 68999988 578899999985 59
Q ss_pred eEEEecCCCCCCccccCCCCHHHHHHHHHhhcCCCeeecChhhHHHhhcCCCcE-EEEEEeCCChhHHHHHHHHHHHHHH
Q 020623 96 ALVALQPSYNEHNIFYGPFDEEFLEEFIKQNFLPLSVPINQDTLNLLKDDKRKI-VLAIVEDETEEKSQKLVTTLKAAAS 174 (323)
Q Consensus 96 ~ivv~k~~~~~~~~y~g~~~~~~L~~fI~~~~~Plv~~~t~~~~~~~~~~~~~~-v~~f~~~~~~e~~~~~~~~l~~~A~ 174 (323)
+|++||+..+....|+|+++.++|.+||+.+.+|+|.++|++++..++..+.+. +++|+.. ..+..+++...|+++|+
T Consensus 84 ~i~lfk~f~~~~~~~~g~~~~~~i~~fi~~~~~p~v~~~~~~~~~~~~~~~~~~~~v~F~~~-~~~~~~~~~~~~~~~A~ 162 (361)
T 3uem_A 84 GVVLFKKFDEGRNNFEGEVTKENLLDFIKHNQLPLVIEFTEQTAPKIFGGEIKTHILLFLPK-SVSDYDGKLSNFKTAAE 162 (361)
T ss_dssp EEEEEESSTTSEEECCSCCCHHHHHHHHHHHSSCSEEECSTTTHHHHHSCSCCEEEEEECCS-SSSSHHHHHHHHHHHHG
T ss_pred eEEEEEecCCCccccCCcCCHHHHHHHHHHcCCCcceecCcccHHHHhcCCCCcEEEEEEeC-CchhHHHHHHHHHHHHH
Confidence 999999866677789999999999999999999999999999999998876544 4556543 23456788999999999
Q ss_pred hCCC-eEEEEEcCc--chhhHhhhcCCcCCCCCCeEEEEeCC---cceeeccCCCCCCCCCCHHHHHHHHHHHHcCcccc
Q 020623 175 ANRE-LVFCYVGIK--QFADFADTFEANKKSKLPKMVVWDGN---ENYLTVIGSESIDEEDQGSQISRFLEGYREGRTEQ 248 (323)
Q Consensus 175 ~~~~-l~F~~vd~~--~~~~~~~~~gl~~~~~~P~ivI~~~~---~kY~~~~~~~~~~~~~t~~~I~~Fi~~~~~Gkl~~ 248 (323)
++++ ++|+++|++ .++++++.||+ +..++|.+++++.. .+|.+. .+..+.++|.+|++++++|+++|
T Consensus 163 ~~~~~i~f~~vd~~~~~~~~~~~~fgi-~~~~~P~~~~~~~~~~~~ky~~~------~~~~~~~~l~~fi~~~l~g~~~~ 235 (361)
T 3uem_A 163 SFKGKILFIFIDSDHTDNQRILEFFGL-KKEECPAVRLITLEEEMTKYKPE------SEELTAERITEFCHRFLEGKIKP 235 (361)
T ss_dssp GGTTTCEEEEECTTSGGGHHHHHHTTC-CTTTCSEEEEEECC--CCEECCS------SCCCCHHHHHHHHHHHHTTCSCC
T ss_pred HccCceEEEEecCChHHHHHHHHHcCC-CccCCccEEEEEcCCcccccCCC------ccccCHHHHHHHHHHHhcCCCcc
Confidence 9998 999999998 67889999999 66679999998873 266542 24689999999999999999999
Q ss_pred cccCC--CCCC--CCeeEEeccCcceehHH--HHHHHHHHHHhcCCC
Q 020623 249 KKVAG--PSIF--GFVNSLIGIRSVYIIVF--MVAMLMLLRTLGKDD 289 (323)
Q Consensus 249 ~~kSe--P~~~--g~v~~vVg~~~~~iv~~--~~~~~~~~~~~~~~~ 289 (323)
+.+|+ |+.+ ++|+.++|.+|..+++- -..++.+..+||++|
T Consensus 236 ~~~s~~~p~~~~~~~v~~l~~~~f~~~~~~~~k~~lv~f~a~wC~~C 282 (361)
T 3uem_A 236 HLMSQELPEDWDKQPVKVLVGKNFEDVAFDEKKNVFVEFYAPWCGHC 282 (361)
T ss_dssp CCBCCCCCTTTTTSSSEEECTTTHHHHHTCTTCEEEEEEECTTCHHH
T ss_pred cccCCCCCcccccCCcEEeecCchhhhcccCCCcEEEEEecCcCHhH
Confidence 99998 5543 89999999998877642 245666778888888
|
| >4f9z_D Endoplasmic reticulum resident protein 27; thioredoxin fold, ER foldase, ERP57, binding protein; HET: PE3 PE4; 2.20A {Homo sapiens} PDB: 2l4c_A | Back alignment and structure |
|---|
Probab=99.96 E-value=5e-28 Score=214.54 Aligned_cols=202 Identities=18% Similarity=0.256 Sum_probs=169.1
Q ss_pred ceecCChHHHHHHHHhcCCcccEEEEecCC-----hhHHHHHHHhhcCceeEEeecccchhhHhhcCCCCCCeEEEecCC
Q 020623 29 VSILNSDAEVSDFVENAGTFFPLFIGFGLD-----ESVMSNLALKYKKKAWFAVAKDFSEDTMVLYDFDKVPALVALQPS 103 (323)
Q Consensus 29 v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~-----~~~f~~~A~~~~~~~~F~~~~~~~~~~~~~~~~~~~p~ivv~k~~ 103 (323)
+..|+|.+++++|++.++ +++|||+.+ .+.|.++|..++ ++.|+++ .+++++.+++++ .|+|++||+.
T Consensus 11 ~~~l~s~~~~~~~l~~~~---v~vVgff~~~~~~~~~~f~~~A~~l~-~~~F~~t--~~~~v~~~~~v~-~p~i~lfk~~ 83 (227)
T 4f9z_D 11 PTWLTDVPAAMEFIAATE---VAVIGFFQDLEIPAVPILHSMVQKFP-GVSFGIS--TDSEVLTHYNIT-GNTICLFRLV 83 (227)
T ss_dssp CEECCSHHHHHHHHHTSS---EEEEEECSCSCSTHHHHHHHHTTTCT-TSEEEEE--CCHHHHHHTTCC-SSEEEEEETT
T ss_pred CeeeCCHHHHHHHHhcCC---eEEEEEecCCCchhHHHHHHHHHhCC-CceEEEE--CCHHHHHHcCCC-CCeEEEEEec
Confidence 567889999999999887 589999753 247999999994 8999988 577899999986 4999999975
Q ss_pred CCCCcccc----CCCCHHHHHHHHHhhcCCCeeecChhhHHHhhcCCCcEEEE-EEeCCChhHHHHHHHHHHHHHHhCCC
Q 020623 104 YNEHNIFY----GPFDEEFLEEFIKQNFLPLSVPINQDTLNLLKDDKRKIVLA-IVEDETEEKSQKLVTTLKAAASANRE 178 (323)
Q Consensus 104 ~~~~~~y~----g~~~~~~L~~fI~~~~~Plv~~~t~~~~~~~~~~~~~~v~~-f~~~~~~e~~~~~~~~l~~~A~~~~~ 178 (323)
.++...|+ |+++.++|.+||+.+++|+|+++|.+|+..++..+.|++++ |++. +.++.+++.+.++++|+++++
T Consensus 84 ~~~~~~~~~~~~g~~~~~~l~~fi~~~~~plv~e~t~~n~~~~~~~~~~~~~l~f~~~-~~~~~~~~~~~~~~vAk~~k~ 162 (227)
T 4f9z_D 84 DNEQLNLEDEDIESIDATKLSRFIEINSLHMVTEYNPVTVIGLFNSVIQIHLLLIMNK-ASPEYEENMHRYQKAAKLFQG 162 (227)
T ss_dssp TTEEEEECHHHHHTCCHHHHHHHHHHHCCCSEEECCHHHHHHHHHSSCCEEEEEEECT-TSTTHHHHHHHHHHHHHHTTT
T ss_pred CcccccccccccCCCCHHHHHHHHHHhCCCceeecCcccHHHHhccCCceEEEEEEcC-CcchHHHHHHHHHHHHHHhhC
Confidence 45556777 47999999999999999999999999999999888777654 5453 234567888999999999999
Q ss_pred -eEEEEEcCc--chhhHhhhcCCcCCCCCCeEEEEeCC-c-ceeeccCCCCCCCCCCHHHHHHHHHHHHcCc
Q 020623 179 -LVFCYVGIK--QFADFADTFEANKKSKLPKMVVWDGN-E-NYLTVIGSESIDEEDQGSQISRFLEGYREGR 245 (323)
Q Consensus 179 -l~F~~vd~~--~~~~~~~~~gl~~~~~~P~ivI~~~~-~-kY~~~~~~~~~~~~~t~~~I~~Fi~~~~~Gk 245 (323)
++|+|+|++ ++++++++||+ +..++|+++|++.. . +|.++ .+++|.++|.+|+++|++||
T Consensus 163 ~i~F~~vd~~~~~~~~~l~~fgl-~~~~~P~~~i~~~~~~~ky~~~------~~~~t~~~i~~Fv~~~~~Gk 227 (227)
T 4f9z_D 163 KILFILVDSGMKENGKVISFFKL-KESQLPALAIYQTLDDEWDTLP------TAEVSVEHVQNFCDGFLSGK 227 (227)
T ss_dssp TCEEEEEETTSGGGHHHHHHTTC-CGGGCSEEEEEESSSCCEEEET------TCCCCHHHHHHHHHHHHTTC
T ss_pred CEEEEEeCCccHhHHHHHHHcCC-CcccCCEEEEEECCCCccccCC------cCCCCHHHHHHHHHHHhCCC
Confidence 999999996 57889999999 66689999999974 3 46553 24589999999999999996
|
| >2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-29 Score=248.39 Aligned_cols=268 Identities=16% Similarity=0.205 Sum_probs=217.3
Q ss_pred ccccCCCCChHHHHHHHHHhcCCCceecCChHHHHHHHHhcCCcccEEEEecCC--h---hHHHHHHHhhcCceeEEeec
Q 020623 5 PTEYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFGLD--E---SVMSNLALKYKKKAWFAVAK 79 (323)
Q Consensus 5 ~~eY~G~R~a~~Iv~~l~k~~~p~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--~---~~f~~~A~~~~~~~~F~~~~ 79 (323)
+..|.|.|+++.|++|+.++++|++..|++ +++|++.++.. +.+|||+.+ + ..|.++|..+++++.|+++.
T Consensus 101 ~~~~~G~~~~~~l~~~l~~~~~~~v~~i~~---~~~~~~~~~~~-~~~v~~f~~~~~~~~~~f~~~A~~~~~~~~F~~~~ 176 (504)
T 2b5e_A 101 SIDYEGPRTAEAIVQFMIKQSQPAVAVVAD---LPAYLANETFV-TPVIVQSGKIDADFNATFYSMANKHFNDYDFVSAE 176 (504)
T ss_dssp EEECCSCCSHHHHHHHHHHHTSCSEEECSC---HHHHHHHSCCS-SCEEEEEESCCHHHHHHHHHHHHHTTTTCEEEEEE
T ss_pred ceeecCCCCHHHHHHHHHHhcCCcceeHHH---HHHHHhcCCCc-eEEEEEeCCCCchHHHHHHHHHHHhhcCcEEEEEH
Confidence 778999999999999999999999999987 88899887710 257777643 2 47889999999999999873
Q ss_pred ccchhhHhhcCCCCCCeEEEecCCCCCCccccCC-C---CHHHHHHHHHhhcCCCeeecChhhHHHhhcCCCcEEEEEEe
Q 020623 80 DFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGP-F---DEEFLEEFIKQNFLPLSVPINQDTLNLLKDDKRKIVLAIVE 155 (323)
Q Consensus 80 ~~~~~~~~~~~~~~~p~ivv~k~~~~~~~~y~g~-~---~~~~L~~fI~~~~~Plv~~~t~~~~~~~~~~~~~~v~~f~~ 155 (323)
+++.++++. +++|++. +....|.|+ + +.+.|.+||..+++|+++++|.+|+..++..+.+++++++.
T Consensus 177 ----~~~~~~~~~----i~l~~~~-~~~~~~~g~~~~~~~~~~l~~fi~~~~~p~v~~~t~~~~~~~~~~~~~~~~l~~~ 247 (504)
T 2b5e_A 177 ----NADDDFKLS----IYLPSAM-DEPVVYNGKKADIADADVFEKWLQVEALPYFGEIDGSVFAQYVESGLPLGYLFYN 247 (504)
T ss_dssp ----CTTSCCEEE----EEETTEE-EEEEECCSCHHHHTSHHHHHHHHHHHSSCSSCBCCHHHHHHHHHTTSCEEEEEES
T ss_pred ----HHHHhcCCe----EEecCCC-CcccccCCcccccCCHHHHHHHHHhcccCCcccCCHhHHHHHhcCCCcEEEEEec
Confidence 566666652 8888873 466678898 7 89999999999999999999999999999988898887765
Q ss_pred CCChhHHHHHHHHHHHHHHhCCC-eEEEEEcCcchhhHhhhcCCcCCCCCCeEEEEeCC--cceeecc-CC-----CCCC
Q 020623 156 DETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGN--ENYLTVI-GS-----ESID 226 (323)
Q Consensus 156 ~~~~e~~~~~~~~l~~~A~~~~~-l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI~~~~--~kY~~~~-~~-----~~~~ 226 (323)
. .+..+.+.+.++++|+++++ ++|+|+|+..++++++.||+ . .++|+++|++.. .+|.+.. +. ....
T Consensus 248 ~--~~~~~~~~~~l~~~a~~~~~~i~F~~id~~~~~~~~~~~gl-~-~~~P~v~i~~~~~~~ky~~~~~~~~~~~~~~~~ 323 (504)
T 2b5e_A 248 D--EEELEEYKPLFTELAKKNRGLMNFVSIDARKFGRHAGNLNM-K-EQFPLFAIHDMTEDLKYGLPQLSEEAFDELSDK 323 (504)
T ss_dssp S--HHHHHHHHHHHHHHHHHTTTTCEEEEEEHHHHTTHHHHTTC-C-SCSSEEEEEETTTTEEEECCCCCHHHHHTCCSC
T ss_pred C--cccHHHHHHHHHHHHHhcCCeeEEEEEehhhhHHHHHHcCC-c-ccCCEEEEEeCCcCcccCCCCCccchhhccccc
Confidence 3 34447788999999999998 99999999988899999999 3 689999999973 3665431 10 0001
Q ss_pred CCCCHHHHHHHHHHHHcCcccccccCC--CCCC-CCeeEEeccCcceehHH--HHHHHHHHHHhcCCC
Q 020623 227 EEDQGSQISRFLEGYREGRTEQKKVAG--PSIF-GFVNSLIGIRSVYIIVF--MVAMLMLLRTLGKDD 289 (323)
Q Consensus 227 ~~~t~~~I~~Fi~~~~~Gkl~~~~kSe--P~~~-g~v~~vVg~~~~~iv~~--~~~~~~~~~~~~~~~ 289 (323)
..++.+.|.+|+++++.|++.|..+|+ |..+ +.|..++|.+|..+++- -..++.+..+||++|
T Consensus 324 ~~~~~~~l~~f~~~~~~g~~~p~~~s~~~p~~~~~~v~~l~~~~f~~~v~~~~k~vlv~F~a~wC~~C 391 (504)
T 2b5e_A 324 IVLESKAIESLVKDFLKGDASPIVKSQEIFENQDSSVFQLVGKNHDEIVNDPKKDVLVLYYAPWCGHC 391 (504)
T ss_dssp CCCCHHHHHHHHHHHHHTCCCCCCCCCCCCCCCSCSEEEECTTTHHHHHHCTTCCEEEEEECTTCHHH
T ss_pred cccCHHHHHHHHHHHHcCCCChhhhcCCCCccccccceecccccHHHhhccCCCCEEEEEECCCChhH
Confidence 127899999999999999999999998 5444 89999999998876643 245667778899988
|
| >3bj5_A Protein disulfide-isomerase; thioredoxin fold, chaperone, endoplasmic reticulum, isomeras membrane, redox-active center; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=5.1e-22 Score=164.41 Aligned_cols=128 Identities=18% Similarity=0.285 Sum_probs=101.3
Q ss_pred HHHhhcCCCeeecChhhHHHhhcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC-eEEEEEcC--cchhhHhhhcCC
Q 020623 122 FIKQNFLPLSVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGI--KQFADFADTFEA 198 (323)
Q Consensus 122 fI~~~~~Plv~~~t~~~~~~~~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~-l~F~~vd~--~~~~~~~~~~gl 198 (323)
.++++++|+|+++|.+|+..|+.++.|++++++...+.++.+.+.+.++++|++|+| ++|+++|. ..+++.+++||+
T Consensus 7 ~~~~~~~PLV~e~t~en~~~~~~~~~~~~~l~f~~~~~~~~~~~~~~~~~vAk~fkgki~Fv~vd~~~~~~~~~l~~fGl 86 (147)
T 3bj5_A 7 HMKHNQLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGKILFAFIDSDHTDNQRILEFFGL 86 (147)
T ss_dssp --------CEEECCTTTHHHHHSSSCCEEEEEECCTTSSSHHHHHHHHHHHHHTTTTTCEEEEECTTCGGGHHHHHHTTC
T ss_pred chhhccCCeeEEeccccHHHHhcCCCceEEEEEecCCcHhHHHHHHHHHHHHHHcCCceEEEEEecchHhHHHHHHHcCC
Confidence 467899999999999999999998888876544322233477888999999999998 99999999 677788999999
Q ss_pred cCCCCCCeEEEEeC---CcceeeccCCCCCCCCCCHHHHHHHHHHHHcCcccccccCC--CCC
Q 020623 199 NKKSKLPKMVVWDG---NENYLTVIGSESIDEEDQGSQISRFLEGYREGRTEQKKVAG--PSI 256 (323)
Q Consensus 199 ~~~~~~P~ivI~~~---~~kY~~~~~~~~~~~~~t~~~I~~Fi~~~~~Gkl~~~~kSe--P~~ 256 (323)
+..++|+++|++. ..||.+. .++++.++|.+|+++|++|+|+|++||| |+.
T Consensus 87 -~~~~~P~v~i~~~~~~~~Ky~~~------~~~~t~~~i~~Fv~d~l~GkL~p~~KSEpiPe~ 142 (147)
T 3bj5_A 87 -KKEECPAVRLITLEEEMTKYKPE------SEELTAERITEFCHRFLEGKIKPHLMSQELPED 142 (147)
T ss_dssp -CGGGCSEEEEEECSSSCEEECCS------CCCCCHHHHHHHHHHHHTTCSCEEECCSCCCGG
T ss_pred -CcccCCEEEEEecccccccCCCC------cccCCHHHHHHHHHHHHcCCccccccCCCCCCC
Confidence 6678999999986 2467653 3468999999999999999999999999 766
|
| >3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.81 E-value=3e-19 Score=184.28 Aligned_cols=226 Identities=15% Similarity=0.142 Sum_probs=173.7
Q ss_pred CCc-ccccCCCCChHHHHHHHHHhcCCCceecCCh---HHHHHHHHhcCCcccEEEEecCCh------hHHHHHHHhhcC
Q 020623 2 HGI-PTEYYGPRKAELLVRYLKKFVAPDVSILNSD---AEVSDFVENAGTFFPLFIGFGLDE------SVMSNLALKYKK 71 (323)
Q Consensus 2 ~G~-~~eY~G~R~a~~Iv~~l~k~~~p~v~~i~s~---~~l~~fl~~~~~~~~~vVgf~~~~------~~f~~~A~~~~~ 71 (323)
+|. ..+|.|.|+++.|++|+++++++++..|++. +++++++..+. +++|+|++.. ..+.++|..+++
T Consensus 196 ~g~~~~~~~G~~~~~~l~~~l~~~~~~~~~~i~~~~~~~~l~~~~~~~~---~~vi~f~~~~~~~~~~~~~~~l~~~f~~ 272 (780)
T 3apo_A 196 SGMAAVKYNGDRSKESLVAFAMQHVRSTVTELSTGNFVNAIETAFAAGV---GWLITFCSKGEDCLTSQTRLRLSGMLDG 272 (780)
T ss_dssp TTSCCEECCSCSCHHHHHHHHHTTSCCCEEECCHHHHHHHHHHHHHHTC---EEEEEEECTTSCCCCHHHHHHHHHHTTT
T ss_pred CCcEeeEecCCCCHHHHHHHHHHhchhhheeccchhhHHHHHhhhccCC---CEEEEEecCcccccCHHHHHHHHHHhhc
Confidence 565 5789999999999999999999999999887 68888887754 5788886421 234444444433
Q ss_pred ce------------------------------------------------------------------------------
Q 020623 72 KA------------------------------------------------------------------------------ 73 (323)
Q Consensus 72 ~~------------------------------------------------------------------------------ 73 (323)
.+
T Consensus 273 ~~~f~~v~c~~~~~l~~~~gi~~~p~~~f~~~~~~~~~~~~~~~y~g~~~~~~i~~~i~~~~p~v~~it~~~f~~~~~~~ 352 (780)
T 3apo_A 273 LVNVGWVDCDAQDSLCKSLDTTASTTAYFPPGATLNDREKSSVLFLNSLDAKEIYMEIIHNLPDFELLSANQLEDRLAHH 352 (780)
T ss_dssp TEEEEEEETTTSHHHHTCC-----CEEEECTTCCSSTTTGGGSEEECCCCHHHHHHHHHHHSCCCCEECHHHHHHHHTTS
T ss_pred cceEEEEEcCCCHHHHHHhCCCCCceeeeccccccCCCcccceeccccccHHHHHHHHHHhCCCcccCCHHHHHHHhccC
Confidence 33
Q ss_pred -------------------------------eEEeecc-cchhhHhhcCCCCCCeEEEecCCC-CCCccccCCCCHHHHH
Q 020623 74 -------------------------------WFAVAKD-FSEDTMVLYDFDKVPALVALQPSY-NEHNIFYGPFDEEFLE 120 (323)
Q Consensus 74 -------------------------------~F~~~~~-~~~~~~~~~~~~~~p~ivv~k~~~-~~~~~y~g~~~~~~L~ 120 (323)
.|+.++. .+..++..+++. .|++++|++.. +....|+|.++.++|.
T Consensus 353 ~~lv~F~~~~~~~~~~~~~~~~A~~~~~~~i~f~~~D~~~~~~~~~~~~~~-~p~i~l~~~~~~e~~~~~~g~~~~~~i~ 431 (780)
T 3apo_A 353 RWLVFFHFGKNENANDPELKKLKTLLKNEHIQVVRFDCSSAPGICSDLYVF-QPSLAVFKGQGTKEYEIHHGKKILYDIL 431 (780)
T ss_dssp EEEEEEECC-----CCGGGGGHHHHHGGGTEEEEEEEGGGCHHHHHHTTCC-SCEEEEEESSTTSSEEECCSCCCHHHHH
T ss_pred CeEEEEecCCccccchHHHHHHHHhhccCceeEEEEeCCCchhhHhhcccc-CChhhhccCCCcceeeecccHhhHHHHH
Confidence 3333321 133456677875 49999998854 2355788999999999
Q ss_pred HHHHhhcCCCeeecChhhHHHhhcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC-eEEEEEcCcchhhHhhhcCCc
Q 020623 121 EFIKQNFLPLSVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEAN 199 (323)
Q Consensus 121 ~fI~~~~~Plv~~~t~~~~~~~~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~-l~F~~vd~~~~~~~~~~~gl~ 199 (323)
+|+..+..|+|.++|.+++..+ .++++++.|...- -..-..+...|+++|+++++ +.|+.+|+++.+.+++.||+
T Consensus 432 ~f~~~~~~~~v~~l~~~~~~~~--~~~~vlv~F~a~w-C~~c~~~~p~~~~~a~~~~~~v~~~~vd~~~~~~~~~~~~v- 507 (780)
T 3apo_A 432 AFAKESVNSHVTTLGPQNFPAS--DKEPWLVDFFAPW-SPPSRALLPELRKASTLLYGQLKVGTLDCTIHEGLCNMYNI- 507 (780)
T ss_dssp HHHHHHHTSCEEECCTTTSCTT--CCSCEEEEEECTT-CHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTC-
T ss_pred HHhhhccCCCCEecCHHHHHHc--CCCeEEEEEECCC-CHHHHHHhHHHHHHHHHhcCCeEEEEEeCCCCHHHHHHcCC-
Confidence 9999999999999999999887 5578877777631 23456788999999999987 99999999988889999999
Q ss_pred CCCCCCeEEEEeCCcceeeccCCCCCCCCCCHHHHHHHHHHHHcC
Q 020623 200 KKSKLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEGYREG 244 (323)
Q Consensus 200 ~~~~~P~ivI~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~~~~~G 244 (323)
..+|.+++++..++|.+ .+..+.++|.+|++++++.
T Consensus 508 --~~~Pt~~~~~~g~~~~~-------~g~~~~~~l~~fi~~~~~~ 543 (780)
T 3apo_A 508 --QAYPTTVVFNQSSIHEY-------EGHHSAEQILEFIEDLRNP 543 (780)
T ss_dssp --CSSSEEEEEETTEEEEE-------CSCSCHHHHHHHHHHHHSC
T ss_pred --CcCCeEEEEcCCceeee-------cCcccHHHHHHHHHhhccc
Confidence 35999999876545544 3457899999999999873
|
| >2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A | Back alignment and structure |
|---|
Probab=99.74 E-value=2.5e-17 Score=133.50 Aligned_cols=124 Identities=21% Similarity=0.269 Sum_probs=103.8
Q ss_pred hcCCCeeecChhhHHHhhcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC-eEEEEEcCcchhhHhhhcCCcCCCCC
Q 020623 126 NFLPLSVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKL 204 (323)
Q Consensus 126 ~~~Plv~~~t~~~~~~~~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~-l~F~~vd~~~~~~~~~~~gl~~~~~~ 204 (323)
.++|++.++|.+|+..++.++.|+++.|... ....+.+...|+++|++|++ +.|+++|.++++++++.||+ +..+.
T Consensus 3 c~~plv~~~t~~~f~~~~~~~~pv~v~f~a~--~~~c~~~~p~l~~~A~~~~gk~~f~~vd~d~~~~~a~~~gi-~~~~i 79 (133)
T 2djk_A 3 LGSPLIGEIGPETYSDYMSAGIPLAYIFAET--AEERKELSDKLKPIAEAQRGVINFGTIDAKAFGAHAGNLNL-KTDKF 79 (133)
T ss_dssp CSCCCSEECCHHHHHHHHHTTSCEEEEECSC--SSSHHHHHHHHHHHHHSSTTTSEEEEECTTTTGGGTTTTTC-CSSSS
T ss_pred cccCceeccChHHHHHHhcCCCCEEEEEecC--hhhHHHHHHHHHHHHHHhCCeEEEEEEchHHhHHHHHHcCC-CcccC
Confidence 4789999999999999888888988877653 23346788999999999998 99999999999999999999 66679
Q ss_pred CeEEEEeC--CcceeeccCCCCCCCCCCHHHHHHHHHHHHcCcccccccCC--CCCC
Q 020623 205 PKMVVWDG--NENYLTVIGSESIDEEDQGSQISRFLEGYREGRTEQKKVAG--PSIF 257 (323)
Q Consensus 205 P~ivI~~~--~~kY~~~~~~~~~~~~~t~~~I~~Fi~~~~~Gkl~~~~kSe--P~~~ 257 (323)
|+++|++. ..+|.+.. ++.++.++|.+|++++++|+++|++||| |+.+
T Consensus 80 Ptl~i~~~~~g~~~~~~~-----~g~~~~~~l~~fi~~~l~Gkl~p~~kSe~iP~~~ 131 (133)
T 2djk_A 80 PAFAIQEVAKNQKFPFDQ-----EKEITFEAIKAFVDDFVAGKIEPSIKSEPIPEKQ 131 (133)
T ss_dssp SEEEEECTTTCCBCCCCS-----SSCCCHHHHHHHHHHHHHTCCCCSSCCCCCCTTS
T ss_pred CEEEEEecCcCcccCCCC-----ccccCHHHHHHHHHHHHcCCcCccccCCCCCCcC
Confidence 99999986 34554311 2568999999999999999999999999 6543
|
| >3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.7e-14 Score=148.78 Aligned_cols=235 Identities=12% Similarity=0.103 Sum_probs=180.5
Q ss_pred CCcccccCCCCChHHHHHHHHHhcCCCceecCChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcCce
Q 020623 2 HGIPTEYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKKKA 73 (323)
Q Consensus 2 ~G~~~eY~G~R~a~~Iv~~l~k~~~p~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~ 73 (323)
+|....|.|.++++.|.+|+.+...|+|..|+ .+++++++...+...+++|.|+.. .+.|.++|..+++.+
T Consensus 518 ~g~~~~~~g~~~~~~l~~fi~~~~~~~v~~l~-~~~f~~~v~~~~~~~~~lv~F~ap~C~~c~~~~p~~~~lA~~~~~~v 596 (780)
T 3apo_A 518 QSSIHEYEGHHSAEQILEFIEDLRNPSVVSLT-PSTFNELVKQRKHDEVWMVDFYSPWSHPSQVLMPEWKRMARTLTGLI 596 (780)
T ss_dssp TTEEEEECSCSCHHHHHHHHHHHHSCSEEECC-HHHHHHHTTTCCTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTS
T ss_pred CCceeeecCcccHHHHHHHHHhhcccceeecC-cccHHHHhhccCCCCeEEEEEECCCCHHHHHhhHHHHHHHHHhhCCe
Confidence 35567899999999999999999999999995 689999887632111467777642 247889999999888
Q ss_pred eEEeeccc-chhhHhhcCCCCCCeEEEecCCCCC---CccccC-CCCHHHHHHHHHhhcCCCeeecChhhHHH-hhcCCC
Q 020623 74 WFAVAKDF-SEDTMVLYDFDKVPALVALQPSYNE---HNIFYG-PFDEEFLEEFIKQNFLPLSVPINQDTLNL-LKDDKR 147 (323)
Q Consensus 74 ~F~~~~~~-~~~~~~~~~~~~~p~ivv~k~~~~~---~~~y~g-~~~~~~L~~fI~~~~~Plv~~~t~~~~~~-~~~~~~ 147 (323)
.|+.++.. ...++.++++.+.|+|++|+.+... ...|.| ..+.++|.+||..+..|.+.+++.+++.. +...++
T Consensus 597 ~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~~~~~~~~~~~y~g~~~~~~~l~~fi~~~~~~~v~~l~~~~~~~~~~~~~~ 676 (780)
T 3apo_A 597 NVGSVDCGQYHSFCTQENVQRYPEIRFYPQKSSKAYQYHSYNGWNRDAYSLRSWGLGFLPQASIDLTPQTFNEKVLQGKT 676 (780)
T ss_dssp EEEEEETTTTHHHHHHTTCCSSSEEEEECCCSSSCCSCEECCCSCCSHHHHHHHHHTTSCCCSEEECHHHHHHHTTTCSS
T ss_pred EEEEEECcchHHHHHHcCCCCCCeEEEEcCCCcCccchhhcCCCCCCHHHHHHHHhhhcccccccCCHHHHHHHHhcCCC
Confidence 88877532 4567788999899999999875332 345888 88999999999999999999999999975 556678
Q ss_pred cEEEEEEeCCChhHHHHHHHHHHHHHHhCCC-eEEEEEcCcchhhHhhhcCCcCCCCCCeEEEEeCCc-ceeeccCCCCC
Q 020623 148 KIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNE-NYLTVIGSESI 225 (323)
Q Consensus 148 ~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~-l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI~~~~~-kY~~~~~~~~~ 225 (323)
++++.|... .-..-+.+...+.++|+++++ +.|+.+|.+..+.+++.||+ ...|.++++...+ ...+. |..
T Consensus 677 ~v~v~F~a~-wC~~C~~~~p~~~~la~~~~~~~~~~~vd~~~~~~~~~~~~v---~~~Pt~~~~~~g~~~~~~~-G~~-- 749 (780)
T 3apo_A 677 HWVVDFYAP-WSGPSQNFAPEFELLARMIKGKVRAGKVDCQAYPQTCQKAGI---KAYPSVKLYQYERAKKSIW-EEQ-- 749 (780)
T ss_dssp CEEEEEECT-TCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTCHHHHHHTTC---CSSSEEEEEEEETTTTEEE-EEE--
T ss_pred eEEEEEECC-CCHHHHHHHHHHHHHHHHhcCCceEEEEECCCCHHHHHhcCC---CcCCEEEEEcCCCcccccc-Ccc--
Confidence 887777653 112345677889999999987 99999999988888999999 5799998874322 21121 100
Q ss_pred CCCCCHHHHHHHHHHHHcC
Q 020623 226 DEEDQGSQISRFLEGYREG 244 (323)
Q Consensus 226 ~~~~t~~~I~~Fi~~~~~G 244 (323)
-+..+.+.|.+||+..+..
T Consensus 750 ~g~~~~~~l~~~l~~~l~~ 768 (780)
T 3apo_A 750 INSRDAKTIAALIYGKLET 768 (780)
T ss_dssp ECCCCHHHHHHHHHHHTTC
T ss_pred cCCcCHHHHHHHHHHHHHH
Confidence 0246889999999999854
|
| >3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A | Back alignment and structure |
|---|
Probab=99.52 E-value=3.3e-12 Score=119.73 Aligned_cols=224 Identities=12% Similarity=0.161 Sum_probs=163.4
Q ss_pred CcccccCCCCChHHHHHHHHHhcCCCceecCChHHHHHHHHhcCCcccEEEEecC-C-------hhHHHHHHHhhcCcee
Q 020623 3 GIPTEYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFGL-D-------ESVMSNLALKYKKKAW 74 (323)
Q Consensus 3 G~~~eY~G~R~a~~Iv~~l~k~~~p~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~-~-------~~~f~~~A~~~~~~~~ 74 (323)
+.+..|.|+.+++.|++|++....|.+..++ .+.+..+.+.... +++|.|.. + ...|.++|+++++.+.
T Consensus 93 ~~~~~~~g~~~~~~i~~fi~~~~~p~v~~~~-~~~~~~~~~~~~~--~~~v~F~~~~~~~~~~~~~~~~~~A~~~~~~i~ 169 (361)
T 3uem_A 93 EGRNNFEGEVTKENLLDFIKHNQLPLVIEFT-EQTAPKIFGGEIK--THILLFLPKSVSDYDGKLSNFKTAAESFKGKIL 169 (361)
T ss_dssp TSEEECCSCCCHHHHHHHHHHHSSCSEEECS-TTTHHHHHSCSCC--EEEEEECCSSSSSHHHHHHHHHHHHGGGTTTCE
T ss_pred CCccccCCcCCHHHHHHHHHHcCCCcceecC-cccHHHHhcCCCC--cEEEEEEeCCchhHHHHHHHHHHHHHHccCceE
Confidence 4457899999999999999999999999995 5677777765542 34555543 2 1368899999998888
Q ss_pred EEeeccc---chhhHhhcCCCC--CCeEEEecCCCC-CCcccc-CCCCHHHHHHHHHhhcC------------------C
Q 020623 75 FAVAKDF---SEDTMVLYDFDK--VPALVALQPSYN-EHNIFY-GPFDEEFLEEFIKQNFL------------------P 129 (323)
Q Consensus 75 F~~~~~~---~~~~~~~~~~~~--~p~ivv~k~~~~-~~~~y~-g~~~~~~L~~fI~~~~~------------------P 129 (323)
|+.++.. ...++..+|+.. .|++++++...+ ..+.+. |.++.+.|.+|+....- .
T Consensus 170 f~~vd~~~~~~~~~~~~fgi~~~~~P~~~~~~~~~~~~ky~~~~~~~~~~~l~~fi~~~l~g~~~~~~~s~~~p~~~~~~ 249 (361)
T 3uem_A 170 FIFIDSDHTDNQRILEFFGLKKEECPAVRLITLEEEMTKYKPESEELTAERITEFCHRFLEGKIKPHLMSQELPEDWDKQ 249 (361)
T ss_dssp EEEECTTSGGGHHHHHHTTCCTTTCSEEEEEECC--CCEECCSSCCCCHHHHHHHHHHHHTTCSCCCCBCCCCCTTTTTS
T ss_pred EEEecCChHHHHHHHHHcCCCccCCccEEEEEcCCcccccCCCccccCHHHHHHHHHHHhcCCCcccccCCCCCcccccC
Confidence 8877432 456788999876 899999986322 222333 78999999999998531 2
Q ss_pred CeeecChhhHHHhh-cCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC---eEEEEEcCcchhhHhhhcCCcCCCCCC
Q 020623 130 LSVPINQDTLNLLK-DDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE---LVFCYVGIKQFADFADTFEANKKSKLP 205 (323)
Q Consensus 130 lv~~~t~~~~~~~~-~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~---l~F~~vd~~~~~~~~~~~gl~~~~~~P 205 (323)
.+..++.+++..+. ..++++++.|... --..-+.+...+.++|+.+++ +.|+.+|+.... +..+++ ..+|
T Consensus 250 ~v~~l~~~~f~~~~~~~~k~~lv~f~a~-wC~~C~~~~p~~~~la~~~~~~~~v~~~~vd~~~~~--~~~~~v---~~~P 323 (361)
T 3uem_A 250 PVKVLVGKNFEDVAFDEKKNVFVEFYAP-WCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANE--VEAVKV---HSFP 323 (361)
T ss_dssp SSEEECTTTHHHHHTCTTCEEEEEEECT-TCHHHHHHHHHHHHHHHHTTTCSSEEEEEEETTTCB--CSSCCC---CSSS
T ss_pred CcEEeecCchhhhcccCCCcEEEEEecC-cCHhHHHHHHHHHHHHHHhccCCcEEEEEEECCccc--hhhcCC---cccC
Confidence 37788999998865 4567777777653 123446778899999999874 999999987543 567888 5789
Q ss_pred eEEEEeCC-c-ceeeccCCCCCCCCCCHHHHHHHHHHH
Q 020623 206 KMVVWDGN-E-NYLTVIGSESIDEEDQGSQISRFLEGY 241 (323)
Q Consensus 206 ~ivI~~~~-~-kY~~~~~~~~~~~~~t~~~I~~Fi~~~ 241 (323)
.++++..+ + ..... .+..+.+.|.+||+.-
T Consensus 324 t~~~~~~~~~~~~~~~------~G~~~~~~l~~~l~~~ 355 (361)
T 3uem_A 324 TLKFFPASADRTVIDY------NGERTLDGFKKFLESG 355 (361)
T ss_dssp EEEEECSSSSCCCEEC------CSCSSHHHHHHHHTTT
T ss_pred eEEEEECCCCcceeEe------cCCCCHHHHHHHHHhc
Confidence 99999654 3 22222 3457899999999754
|
| >3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.46 E-value=4e-13 Score=123.45 Aligned_cols=130 Identities=13% Similarity=0.182 Sum_probs=106.2
Q ss_pred ccccCCCCChHHHHHHHHHhcCCCceecCChHHHHHHHHhcCCcccEEEEecCC---hhHHHHHHHhhcCceeEEeeccc
Q 020623 5 PTEYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFGLD---ESVMSNLALKYKKKAWFAVAKDF 81 (323)
Q Consensus 5 ~~eY~G~R~a~~Iv~~l~k~~~p~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~---~~~f~~~A~~~~~~~~F~~~~~~ 81 (323)
+.+|.|+|+++.|++|+.+++++++..|.+.+++++|++.++. +.+++|..+ ...|.++|..+++.+.|+.+.
T Consensus 121 ~~~y~G~r~~~~i~~fl~~~~~~~v~~i~~~~~l~~~l~~~~~--~~vi~fs~~~~~~~~f~~~A~~~~~~~~F~~v~-- 196 (298)
T 3ed3_A 121 NEVYSGARTLAPIVDFSLSRIRSYVKKFVRIDTLGSLLRKSPK--LSVVLFSKQDKISPVYKSIALDWLGKFDFYSIS-- 196 (298)
T ss_dssp EEECCSCCSHHHHHHHHHTTCCCCEEECSCGGGHHHHHTSCSS--EEEEEEESSSSCCHHHHHHHHHTBTTEEEEEEE--
T ss_pred ceeecCCcCHHHHHHHHHHhcccccEEcCCHHHHHHHHhcCCc--eEEEEEcCCCcchHHHHHHHHHhhcCcEEEEEc--
Confidence 6799999999999999999999999999999999999987653 566667543 358999999999999998873
Q ss_pred chhhHh-----hcC-----C-------------CCCCeEEEecCCCCCCccccC-CCCHHHHHHHHH--hhcCCCeeecC
Q 020623 82 SEDTMV-----LYD-----F-------------DKVPALVALQPSYNEHNIFYG-PFDEEFLEEFIK--QNFLPLSVPIN 135 (323)
Q Consensus 82 ~~~~~~-----~~~-----~-------------~~~p~ivv~k~~~~~~~~y~g-~~~~~~L~~fI~--~~~~Plv~~~t 135 (323)
+.+++. +++ + .+.|+|++|++..++..+|.| .++.++|.+||. .+.+|+++++|
T Consensus 197 ~~~~a~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~~P~lv~~~~~~~~~~~y~g~~~~~~~i~~fi~~~~~~~p~~~~ls 276 (298)
T 3ed3_A 197 NKKLKQLTDMNPTYEKTPEIFKYLQKVIPEQRQSDKSKLVVFDADKDKFWEYEGNSINKNDISKFLRDTFSITPNEGPFS 276 (298)
T ss_dssp GGGCCCCCTTCTTSTTCHHHHHHHHHHHHHHTTCSSCEEEEEETTTTEEEECCCSSCCHHHHHHHHHHHHTCCCSSSTTS
T ss_pred chHhhhhhhhhhhcccCcchhhhhhcccccccccCCCeEEEEcCCCCceEEeccccCCHHHHHHHHHhhcCCCCCcCCCc
Confidence 233332 121 1 358999999986667778985 789999999999 88999999999
Q ss_pred hhh
Q 020623 136 QDT 138 (323)
Q Consensus 136 ~~~ 138 (323)
..+
T Consensus 277 ~~~ 279 (298)
T 3ed3_A 277 RRS 279 (298)
T ss_dssp HHH
T ss_pred hHH
Confidence 855
|
| >2l4c_A Endoplasmic reticulum resident protein 27; ERP27, PDI, B domain, peptide binding; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=2e-13 Score=109.33 Aligned_cols=102 Identities=17% Similarity=0.220 Sum_probs=86.6
Q ss_pred HHHHhcCCCcee--cCChHHHHHHHHhcCCcccEEEEecCC-----hhHHHHHHHhhcCceeEEeecccchhhHhhcCCC
Q 020623 20 YLKKFVAPDVSI--LNSDAEVSDFVENAGTFFPLFIGFGLD-----ESVMSNLALKYKKKAWFAVAKDFSEDTMVLYDFD 92 (323)
Q Consensus 20 ~l~k~~~p~v~~--i~s~~~l~~fl~~~~~~~~~vVgf~~~-----~~~f~~~A~~~~~~~~F~~~~~~~~~~~~~~~~~ 92 (323)
-|+++++|++.. |+|.+++++|++.++ +++||||.+ .+.|.++|..+ +++.|+++ .+++++.++++.
T Consensus 12 ~m~kq~gP~~~~~~i~s~~e~e~fi~~~~---v~VVGfF~~~~~~~~~~F~~~A~~~-~d~~F~~t--~~~~v~~~~~v~ 85 (124)
T 2l4c_A 12 KSSDGPGAAQEPTWLTDVPAAMEFIAATE---VAVIGFFQDLEIPAVPILHSMVQKF-PGVSFGIS--TDSEVLTHYNIT 85 (124)
T ss_dssp SSCCCSCCSCCCEECCSHHHHHHHHHTSS---EEEEEECSCTTSTHHHHHHHHHHHC-TTSEEEEE--CCHHHHHHTTCC
T ss_pred HHHhccCCCCcceEcCCHHHHHHHHhcCC---CEEEEEECCCCChhHHHHHHHHHhC-CCceEEEE--ChHHHHHHcCCC
Confidence 367899999855 999999999998887 589999864 24788999999 89999998 568899999985
Q ss_pred CCCeEEEecCCCCCCccccC----CCCHHHHHHHHHhhcC
Q 020623 93 KVPALVALQPSYNEHNIFYG----PFDEEFLEEFIKQNFL 128 (323)
Q Consensus 93 ~~p~ivv~k~~~~~~~~y~g----~~~~~~L~~fI~~~~~ 128 (323)
.|+|++||+..+....|.| +++.++|++||+.|++
T Consensus 86 -~~~vvlfkkfde~~~~~~g~~~~~~~~~~L~~FI~~n~l 124 (124)
T 2l4c_A 86 -GNTICLFRLVDNEQLNLEDEDIESIDATKLSRFIEINSL 124 (124)
T ss_dssp -SSCEEEEETTTTEEEEECHHHHTTCCHHHHHHHHHHHCC
T ss_pred -CCeEEEEEcCCCCceeecCcccCCCCHHHHHHHHHHhcC
Confidence 7999999986556678886 7999999999999874
|
| >3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.34 E-value=2.2e-10 Score=105.08 Aligned_cols=204 Identities=17% Similarity=0.238 Sum_probs=144.3
Q ss_pred CCCceecCChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeecc---cchhhHhhcCCCCC
Q 020623 26 APDVSILNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAKD---FSEDTMVLYDFDKV 94 (323)
Q Consensus 26 ~p~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~~---~~~~~~~~~~~~~~ 94 (323)
.+.|..| +.+++++++.+.+. +++|-|... ...|.++|..+.+.+.++.++. ...+++.++++...
T Consensus 16 ~~~vv~l-t~~~f~~~i~~~~~--~vlV~F~A~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~d~~~~~~l~~~~~I~~~ 92 (298)
T 3ed3_A 16 DPHISEL-TPKSFDKAIHNTNY--TSLVEFYAPWCGHCKKLSSTFRKAAKRLDGVVQVAAVNCDLNKNKALCAKYDVNGF 92 (298)
T ss_dssp CTTCEEC-CHHHHHHHHTSSSS--CEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTSTTTHHHHHHTTCCBS
T ss_pred CCCeEEe-CHHHHHHHHHhCCC--eEEEEEECCCCHHHHHHHHHHHHHHHHccCCcEEEEEEccCccCHHHHHhCCCCcc
Confidence 3457888 57999999854432 577777542 2478899999887676665532 25678899999999
Q ss_pred CeEEEecCCCC----------------CCccccCCCCHHHHHHHHHhhcCCCeeecC-hhhHHHhhcC-CCcEEEEEEeC
Q 020623 95 PALVALQPSYN----------------EHNIFYGPFDEEFLEEFIKQNFLPLSVPIN-QDTLNLLKDD-KRKIVLAIVED 156 (323)
Q Consensus 95 p~ivv~k~~~~----------------~~~~y~g~~~~~~L~~fI~~~~~Plv~~~t-~~~~~~~~~~-~~~~v~~f~~~ 156 (323)
|++++|+++.- ....|.|+.+.+.|.+||....-|.+..++ .+.+..+... ..+.+++|...
T Consensus 93 Pt~~~~~~g~~v~~~~g~~~~~~~~~~~~~~y~G~r~~~~i~~fl~~~~~~~v~~i~~~~~l~~~l~~~~~~~vi~fs~~ 172 (298)
T 3ed3_A 93 PTLMVFRPPKIDLSKPIDNAKKSFSAHANEVYSGARTLAPIVDFSLSRIRSYVKKFVRIDTLGSLLRKSPKLSVVLFSKQ 172 (298)
T ss_dssp SEEEEEECCCC-------------CCCEEEECCSCCSHHHHHHHHHTTCCCCEEECSCGGGHHHHHTSCSSEEEEEEESS
T ss_pred ceEEEEECCceeecccccccccccccccceeecCCcCHHHHHHHHHHhcccccEEcCCHHHHHHHHhcCCceEEEEEcCC
Confidence 99999987420 134688999999999999999999999995 5678887765 35666665332
Q ss_pred CChhHHHHHHHHHHHHHHhCCC-eEEEEEcCcchhhHh--hhcCCc---------------CCCCCCeEEEEeC-Cccee
Q 020623 157 ETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFA--DTFEAN---------------KKSKLPKMVVWDG-NENYL 217 (323)
Q Consensus 157 ~~~e~~~~~~~~l~~~A~~~~~-l~F~~vd~~~~~~~~--~~~gl~---------------~~~~~P~ivI~~~-~~kY~ 217 (323)
. .....++.+|..+++ +.|+.+......... +.|+.. .....|+|++++. ++++.
T Consensus 173 --~----~~~~~f~~~A~~~~~~~~F~~v~~~~~a~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~~P~lv~~~~~~~~~~ 246 (298)
T 3ed3_A 173 --D----KISPVYKSIALDWLGKFDFYSISNKKLKQLTDMNPTYEKTPEIFKYLQKVIPEQRQSDKSKLVVFDADKDKFW 246 (298)
T ss_dssp --S----SCCHHHHHHHHHTBTTEEEEEEEGGGCCCCCTTCTTSTTCHHHHHHHHHHHHHHTTCSSCEEEEEETTTTEEE
T ss_pred --C----cchHHHHHHHHHhhcCcEEEEEcchHhhhhhhhhhhcccCcchhhhhhcccccccccCCCeEEEEcCCCCceE
Confidence 1 122579999999998 999998765432222 233310 1257999999987 45655
Q ss_pred eccCCCCCCCCCCHHHHHHHHHHHHc
Q 020623 218 TVIGSESIDEEDQGSQISRFLEGYRE 243 (323)
Q Consensus 218 ~~~~~~~~~~~~t~~~I~~Fi~~~~~ 243 (323)
...| +.++.+.|.+||.+-.+
T Consensus 247 ~y~g-----~~~~~~~i~~fi~~~~~ 267 (298)
T 3ed3_A 247 EYEG-----NSINKNDISKFLRDTFS 267 (298)
T ss_dssp ECCC-----SSCCHHHHHHHHHHHHT
T ss_pred Eecc-----ccCCHHHHHHHHHhhcC
Confidence 5432 35899999999986443
|
| >3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A | Back alignment and structure |
|---|
Probab=99.32 E-value=9.7e-11 Score=102.94 Aligned_cols=200 Identities=16% Similarity=0.224 Sum_probs=146.8
Q ss_pred CCceecCChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcCc---eeEEeec-ccchhhHhhcCCCCC
Q 020623 27 PDVSILNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKKK---AWFAVAK-DFSEDTMVLYDFDKV 94 (323)
Q Consensus 27 p~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~---~~F~~~~-~~~~~~~~~~~~~~~ 94 (323)
..+..++ .+.++.++..++ +++|-|... ...+.++|..+.+. +.|+.++ +...+++.+|++...
T Consensus 15 ~~v~~l~-~~~~~~~~~~~~---~v~v~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~ 90 (241)
T 3idv_A 15 NGVLVLN-DANFDNFVADKD---TVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATSASVLASRFDVSGY 90 (241)
T ss_dssp TTEEEEC-TTTHHHHHTTCS---EEEEEEECTTCHHHHHHHHHHHHHHHHHHTSSSCCCEEEEETTTCHHHHHHTTCCSS
T ss_pred CCcEEec-ccCHHHHHhcCC---eEEEEEECCCCHHHHHhhHHHHHHHHHHhhcCCceEEEEEeccCCHHHHHhcCCCcC
Confidence 3577784 588999887766 567777543 24778888888754 6666553 235678899999999
Q ss_pred CeEEEecCCCCCCccccCCCCHHHHHHHHHhhcCC-------CeeecChhhHHHhhcCCCcEEEEEEeCCChhHHHHHHH
Q 020623 95 PALVALQPSYNEHNIFYGPFDEEFLEEFIKQNFLP-------LSVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVT 167 (323)
Q Consensus 95 p~ivv~k~~~~~~~~y~g~~~~~~L~~fI~~~~~P-------lv~~~t~~~~~~~~~~~~~~v~~f~~~~~~e~~~~~~~ 167 (323)
|++++|++ ++...|.|..+.+.|.+||....-| .+..++.+++..+...++++++.|...-- ..-+.+..
T Consensus 91 Pt~~~~~~--g~~~~~~g~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~a~wC-~~C~~~~p 167 (241)
T 3idv_A 91 PTIKILKK--GQAVDYEGSRTQEEIVAKVREVSQPDWTPPPEVTLVLTKENFDEVVNDADIILVEFYAPWC-GHCKKLAP 167 (241)
T ss_dssp SEEEEEET--TEEEECCSCSCHHHHHHHHHHHHSTTCCCCCCSSEECCTTTHHHHHHHCSEEEEEEECTTC-TGGGGTHH
T ss_pred CEEEEEcC--CCcccccCcccHHHHHHHHhhccCcccccccccceeccHHHHHHhhccCCeEEEEEECCCC-HHHHHhHH
Confidence 99999975 3444578999999999999998766 47778899999887766777777765211 11233445
Q ss_pred HHHHHHHhCC----CeEEEEEcCcchhhHhhhcCCcCCCCCCeEEEEeCCcceeeccCCCCCCCCCCHHHHHHHHHHHHc
Q 020623 168 TLKAAASANR----ELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEGYRE 243 (323)
Q Consensus 168 ~l~~~A~~~~----~l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~~~~~ 243 (323)
.+.++|+.++ ++.|+.+|.+..+.+++.||+ ..+|.+++++..+... . .+..+.+.|.+|+++...
T Consensus 168 ~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~v---~~~Pt~~~~~~g~~~~-~------~g~~~~~~l~~~l~~~~~ 237 (241)
T 3idv_A 168 EYEKAAKELSKRSPPIPLAKVDATAETDLAKRFDV---SGYPTLKIFRKGRPYD-Y------NGPREKYGIVDYMIEQSG 237 (241)
T ss_dssp HHHHHHHHHHTSSSCCCEEEEETTTCHHHHHHTTC---CSSSEEEEEETTEEEE-C------CSCCSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccCCcEEEEEEECCCCHHHHHHcCC---cccCEEEEEECCeEEE-e------cCCCCHHHHHHHHHhhhC
Confidence 5666666643 399999999988889999999 4799999987544333 2 345789999999998754
|
| >1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A | Back alignment and structure |
|---|
Probab=99.24 E-value=1.2e-09 Score=102.11 Aligned_cols=200 Identities=13% Similarity=0.163 Sum_probs=147.3
Q ss_pred CceecCChHHHHHHHHhcCCcccEEEEecCC-------hhH-------HHHHHHhhcC-ceeEEeecc-cchhhHhhcCC
Q 020623 28 DVSILNSDAEVSDFVENAGTFFPLFIGFGLD-------ESV-------MSNLALKYKK-KAWFAVAKD-FSEDTMVLYDF 91 (323)
Q Consensus 28 ~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~-------~~~-------f~~~A~~~~~-~~~F~~~~~-~~~~~~~~~~~ 91 (323)
.|..| +.+++++++++++ +++|-|... .+. |.++|..+.+ .+.|+.++. ...+++.++++
T Consensus 12 ~v~~l-~~~~f~~~i~~~~---~~lV~F~a~wC~c~~~~p~~~~~~~~~~~~a~~~~~~~v~~~~Vd~~~~~~l~~~~~v 87 (350)
T 1sji_A 12 RVVSL-TEKNFKQVLKKYD---VLCLYYHESVSSDKVAQKQFQLKEIVLELVAQVLEHKDIGFVMVDAKKEAKLAKKLGF 87 (350)
T ss_dssp CCEEE-CHHHHHHHHTTCS---EEEEEEECCSCSSSTTSHHHHHHHHHHHHHHHHGGGSSEEEEEEETTTTHHHHHHHTC
T ss_pred ccEEC-CHHHHHHHHhhCC---eEEEEEECCCCcchhhCchhhhhhHHHHHHHHHHhhcCcEEEEEeCCCCHHHHHhcCC
Confidence 47778 5788999887766 577777532 133 8899998876 477776643 35678999999
Q ss_pred CCCCeEEEecCCCCCCccccCCCCHHHHHHHHHhhcCCCeeecC-hhhHHHhhc-CCCcEEEEEEeCCChhHHHHHHHHH
Q 020623 92 DKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQNFLPLSVPIN-QDTLNLLKD-DKRKIVLAIVEDETEEKSQKLVTTL 169 (323)
Q Consensus 92 ~~~p~ivv~k~~~~~~~~y~g~~~~~~L~~fI~~~~~Plv~~~t-~~~~~~~~~-~~~~~v~~f~~~~~~e~~~~~~~~l 169 (323)
.+.|++++|+++ ....|.|..+.+.|.+||.+..-|.+.+++ .+++..+.. ...+.++.|+.. .. ......+
T Consensus 88 ~~~Pt~~~~~~g--~~~~~~G~~~~~~l~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~vv~ff~~--~~--~~~~~~~ 161 (350)
T 1sji_A 88 DEEGSLYVLKGD--RTIEFDGEFAADVLVEFLLDLIEDPVEIINSKLEVQAFERIEDQIKLIGFFKS--EE--SEYYKAF 161 (350)
T ss_dssp CSTTEEEEEETT--EEEEECSCCCHHHHHHHHHTTSSCSEEECCSHHHHHHHHHCCSSCEEEEECSC--TT--SHHHHHH
T ss_pred CccceEEEEECC--cEEEecCCCCHHHHHHHHHHhcCCcceeccchHHHHHHhccCCCcEEEEEECC--CC--cHHHHHH
Confidence 999999999863 345688999999999999999999999995 678888776 455555666543 11 2345789
Q ss_pred HHHHHhCCC-eEEEEEcCcchhhHhhhcCCcCCCCCCeEEEEeC-CcceeeccCCCCCCCCCCHHHHHHHHHHHHcCccc
Q 020623 170 KAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDG-NENYLTVIGSESIDEEDQGSQISRFLEGYREGRTE 247 (323)
Q Consensus 170 ~~~A~~~~~-l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI~~~-~~kY~~~~~~~~~~~~~t~~~I~~Fi~~~~~Gkl~ 247 (323)
.++|..+++ +.|+++.. +.+++.+|+ + .|.++++.+ +++.....| ...+.+.|.+|++......+.
T Consensus 162 ~~~A~~~~~~~~f~~~~~---~~~~~~~~v-~---~p~i~~~~~~~~~~~~y~g-----~~~~~~~l~~fi~~~~~p~v~ 229 (350)
T 1sji_A 162 EEAAEHFQPYIKFFATFD---KGVAKKLSL-K---MNEVDFYEPFMDEPIAIPD-----KPYTEEELVEFVKEHQRPTLR 229 (350)
T ss_dssp HHHHHHTTTTSEEEEECC---HHHHHHHTC-C---TTCEEEECTTCSSCEECSS-----SSCCHHHHHHHHHHHCCCSEE
T ss_pred HHHHHhhccCcEEEEECC---HHHHHHcCC-C---CCcEEEEeCCCCCceecCC-----CCCCHHHHHHHHHHcCccchh
Confidence 999999987 99998854 356788899 4 899999886 333333322 137899999999987655444
Q ss_pred cc
Q 020623 248 QK 249 (323)
Q Consensus 248 ~~ 249 (323)
..
T Consensus 230 el 231 (350)
T 1sji_A 230 RL 231 (350)
T ss_dssp EC
T ss_pred hc
Confidence 43
|
| >3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A | Back alignment and structure |
|---|
Probab=99.21 E-value=2.7e-09 Score=103.66 Aligned_cols=227 Identities=11% Similarity=0.183 Sum_probs=161.5
Q ss_pred CcccccC-CCCChHHHHHHHHHhcCCCceecCChHHHHHHHHhcCCcccEEEEe-cCC----h-------hHHHHHHHhh
Q 020623 3 GIPTEYY-GPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGF-GLD----E-------SVMSNLALKY 69 (323)
Q Consensus 3 G~~~eY~-G~R~a~~Iv~~l~k~~~p~v~~i~s~~~l~~fl~~~~~~~~~vVgf-~~~----~-------~~f~~~A~~~ 69 (323)
+.+..|. |..+.+.|.+|+....-|.+..++. +.+..+.+ .+ .++.| ..+ . +.+.++|+++
T Consensus 193 ~~~~~y~~~~~~~~~l~~fi~~~~~p~v~e~t~-~n~~~~~~-~~----~~v~~~~~~~~~~~~~~~~~~~~~~~vA~~~ 266 (481)
T 3f8u_A 193 DKTVAYTEQKMTSGKIKKFIQENIFGICPHMTE-DNKDLIQG-KD----LLIAYYDVDYEKNAKGSNYWRNRVMMVAKKF 266 (481)
T ss_dssp CSEEECCCSSCCHHHHHHHHHHHTTTTSCEECT-TTHHHHTT-SS----EEEEEECCCTTTCHHHHHHHHHHHHHHHHHH
T ss_pred CcccccCCCCCCHHHHHHHHHHhCCCCccccCh-hHHHHhcC-CC----ceEEEEecccccchhhHHHHHHHHHHHHHHh
Confidence 4457788 8899999999999999999999964 56666653 33 33433 221 1 2367889999
Q ss_pred cCc---eeEEeeccc-chhhHhhcCCC----CCCeEEEecCCCCCCccccCCCCHH--HHHHHHHhhc------------
Q 020623 70 KKK---AWFAVAKDF-SEDTMVLYDFD----KVPALVALQPSYNEHNIFYGPFDEE--FLEEFIKQNF------------ 127 (323)
Q Consensus 70 ~~~---~~F~~~~~~-~~~~~~~~~~~----~~p~ivv~k~~~~~~~~y~g~~~~~--~L~~fI~~~~------------ 127 (323)
++. +.|+.++.. -...+..+|++ ..|.++++.. .+..+.+.+.++.+ .|++|+....
T Consensus 267 ~~k~~~i~F~~~D~~~~~~~l~~~gl~~~~~~~P~~~i~~~-~~~ky~~~~~~t~e~~~l~~f~~~~~~g~~~~~~~s~~ 345 (481)
T 3f8u_A 267 LDAGHKLNFAVASRKTFSHELSDFGLESTAGEIPVVAIRTA-KGEKFVMQEEFSRDGKALERFLQDYFDGNLKRYLKSEP 345 (481)
T ss_dssp HHTTCCCEEEEEETTTTHHHHGGGTCCCCTTCSCEEEEECS-SSCEEECCSCCCTTSHHHHHHHHHHHHTCCCCCCCCCC
T ss_pred cCCCceEEEEEEcHHHHHHHHHHcCCCcccCCCcEEEEEcC-CCcccCCCcccCccHHHHHHHHHHHhcCCcccccccCC
Confidence 877 888877432 23455677775 4788888863 34556667888888 9999998642
Q ss_pred -----CCCeeecChhhHHHhhcC-CCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC---eEEEEEcCcchhhHhhhcCC
Q 020623 128 -----LPLSVPINQDTLNLLKDD-KRKIVLAIVEDETEEKSQKLVTTLKAAASANRE---LVFCYVGIKQFADFADTFEA 198 (323)
Q Consensus 128 -----~Plv~~~t~~~~~~~~~~-~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~---l~F~~vd~~~~~~~~~~~gl 198 (323)
-..+..++.+++..+... ++++++.|... -=..-+.+...+.++|+.+++ +.|+.+|.+.. .+...|++
T Consensus 346 ~p~~~~~~v~~~~~~~~~~~~~~~~k~vlv~f~a~-wC~~C~~~~p~~~~l~~~~~~~~~v~~~~id~~~~-~~~~~~~v 423 (481)
T 3f8u_A 346 IPESNDGPVKVVVAENFDEIVNNENKDVLIEFYAP-WCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATAN-DVPSPYEV 423 (481)
T ss_dssp CCSCCCSSSEEECTTTHHHHHTCTTCEEEEEEECT-TBHHHHHHHHHHHHHHHHTTTCSSEEEEEEETTSS-CCCTTCCC
T ss_pred CCCCCCCCeEEecccCHHHHhhcCCCcEEEEEecC-cChhHHHhhHHHHHHHHHhccCCCEEEEEEECCch-hhHhhCCC
Confidence 125677888899876544 67777777752 123446777889999999874 99999999764 56677888
Q ss_pred cCCCCCCeEEEEeCCcc--eeeccCCCCCCCCCCHHHHHHHHHHHHcCccc
Q 020623 199 NKKSKLPKMVVWDGNEN--YLTVIGSESIDEEDQGSQISRFLEGYREGRTE 247 (323)
Q Consensus 199 ~~~~~~P~ivI~~~~~k--Y~~~~~~~~~~~~~t~~~I~~Fi~~~~~Gkl~ 247 (323)
..+|.+++++.+++ -... .+..+.+.|.+||+......+.
T Consensus 424 ---~~~Pt~~~~~~~~~~~~~~~------~G~~~~~~l~~~l~~~~~~~~~ 465 (481)
T 3f8u_A 424 ---RGFPTIYFSPANKKLNPKKY------EGGRELSDFISYLQREATNPPV 465 (481)
T ss_dssp ---CSSSEEEEECTTCTTSCEEC------CSCCSHHHHHHHHHHHCSSCCC
T ss_pred ---cccCEEEEEeCCCeEeeeEe------CCCCCHHHHHHHHHHhcCCccc
Confidence 57999999887543 2222 3457899999999998765544
|
| >3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A | Back alignment and structure |
|---|
Probab=99.20 E-value=1e-09 Score=103.39 Aligned_cols=196 Identities=13% Similarity=0.173 Sum_probs=144.3
Q ss_pred CceecCChHHHHHHHHhcCCcccEEEEecCC---h----h-------HHHHHHHhhcC-ceeEEeecc-cchhhHhhcCC
Q 020623 28 DVSILNSDAEVSDFVENAGTFFPLFIGFGLD---E----S-------VMSNLALKYKK-KAWFAVAKD-FSEDTMVLYDF 91 (323)
Q Consensus 28 ~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~---~----~-------~f~~~A~~~~~-~~~F~~~~~-~~~~~~~~~~~ 91 (323)
.|..| +.+.++++++.++ +++|-|... . . .+.++|..+.. .+.|+.++. ...+++.+|++
T Consensus 14 ~v~~l-t~~~f~~~i~~~~---~vlV~FyApWC~~~~~~~~l~~~~p~~e~~a~~~~~~~v~~~~Vd~~~~~~l~~~~~V 89 (367)
T 3us3_A 14 RVINV-NAKNYKNVFKKYE---VLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEKDAAVAKKLGL 89 (367)
T ss_dssp CCEEC-CTTTHHHHHHHCS---EEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEETTTTHHHHHHHTC
T ss_pred ccEEC-CHHHHHHHHhhCC---eEEEEEECCCchhHHHhhhhccccHHHHHHHHHhhcCCceEEEEeCcccHHHHHHcCC
Confidence 47778 5689999998776 467777542 1 2 57788888865 477877643 36788999999
Q ss_pred CCCCeEEEecCCCCCCccccCCCCHHHHHHHHHhhcCCCeeecC-hhhHHHhhc-CCCcEEEEEEeCCChhHHHHHHHHH
Q 020623 92 DKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQNFLPLSVPIN-QDTLNLLKD-DKRKIVLAIVEDETEEKSQKLVTTL 169 (323)
Q Consensus 92 ~~~p~ivv~k~~~~~~~~y~g~~~~~~L~~fI~~~~~Plv~~~t-~~~~~~~~~-~~~~~v~~f~~~~~~e~~~~~~~~l 169 (323)
.+.|++++|+++ ....|.|..+.+.|.+||.++.-|.+.+++ .+++..+.. .....++.|+.. .. ......+
T Consensus 90 ~~~PTl~~f~~G--~~~~y~G~~~~~~i~~~i~~~~~~~v~~i~~~~~~~~~~~~~~~~~vv~ff~~--~~--~~~~~~f 163 (367)
T 3us3_A 90 TEEDSIYVFKED--EVIEYDGEFSADTLVEFLLDVLEDPVELIEGERELQAFENIEDEIKLIGYFKN--KD--SEHYKAF 163 (367)
T ss_dssp CSTTEEEEEETT--EEEECCSCCSHHHHHHHHHHHHSCSEEECCSHHHHHHHHHCCSSCEEEEECSC--TT--CHHHHHH
T ss_pred CcCceEEEEECC--cEEEeCCCCCHHHHHHHHHHhcCCCcEEcCCHHHHHHHhccCCCcEEEEEECC--CC--chHHHHH
Confidence 999999999963 445788999999999999999999999996 578888876 445556666542 11 2455688
Q ss_pred HHHHHhCCC-eEEEEEcCcchhhHhhhcCCcCCCCCCeEEEEeC-CcceeeccCCCCCCCCCCHHHHHHHHHHHHcCc
Q 020623 170 KAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDG-NENYLTVIGSESIDEEDQGSQISRFLEGYREGR 245 (323)
Q Consensus 170 ~~~A~~~~~-l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI~~~-~~kY~~~~~~~~~~~~~t~~~I~~Fi~~~~~Gk 245 (323)
.++|..+++ +.|+.+.. +.+++.+|+ + .|.|++... ++....+.| +..+.+.|.+||+...-..
T Consensus 164 ~~~A~~~~~~~~F~~~~~---~~~~~~~~v-~---~p~i~lf~~~~~~~~~y~g-----~~~~~~~l~~fi~~~~~p~ 229 (367)
T 3us3_A 164 KEAAEEFHPYIPFFATFD---SKVAKKLTL-K---LNEIDFYEAFMEEPVTIPD-----KPNSEEEIVNFVEEHRRST 229 (367)
T ss_dssp HHHHHHHTTTSCEEEECC---HHHHHHHTC-C---TTCEEEECTTCSSCEECSS-----SSCCHHHHHHHHHHTCSCS
T ss_pred HHHHHhhcCCcEEEEECC---HHHHHHcCC-C---CCeEEEEcCCCCCCeecCC-----CCCCHHHHHHHHHHcCccc
Confidence 999999987 99998864 356788999 4 399998876 232222222 2478999999998865443
|
| >2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A | Back alignment and structure |
|---|
Probab=99.14 E-value=9.3e-09 Score=89.84 Aligned_cols=195 Identities=14% Similarity=0.133 Sum_probs=137.6
Q ss_pred ChHHHHHHH-HhcCCcccEEEEec-CC--h----------hHHHHHHHhh--cCceeEEeecc-cchhhHhhcCCCCCCe
Q 020623 34 SDAEVSDFV-ENAGTFFPLFIGFG-LD--E----------SVMSNLALKY--KKKAWFAVAKD-FSEDTMVLYDFDKVPA 96 (323)
Q Consensus 34 s~~~l~~fl-~~~~~~~~~vVgf~-~~--~----------~~f~~~A~~~--~~~~~F~~~~~-~~~~~~~~~~~~~~p~ 96 (323)
+.+++++++ ++... +++|-++ ++ . +.+.++|..+ .+.+.|+..+. ...+++.+|++...|+
T Consensus 7 ~~~~l~~~~~~~~~~--~v~v~~~~~~~~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt 84 (229)
T 2ywm_A 7 VRMQLKELAQKEFKE--PVSIKLFSQAIGCESCQTAEELLKETVEVIGEAVGQDKIKLDIYSPFTHKEETEKYGVDRVPT 84 (229)
T ss_dssp HHHHHHHHHHHHCCS--CEEEEEECCCTTCGGGGHHHHHHHHHHHHHHHHHCTTTEEEEEECTTTCHHHHHHTTCCBSSE
T ss_pred HHHHHHHHHHHhccC--CeEEEEEccCCCCcccHHHHHHHHHHHHHHhccCCCCceEEEEecCcccHHHHHHcCCCcCcE
Confidence 456777877 34332 3444433 22 1 2566677666 55677776642 3678899999999999
Q ss_pred EEEecCCCCCCccccCCCCHHHHHHHHHhhc--CCCeeecChhhHHHhhcCCCcE-EEEEEeCCChhHHHHHHHHHHHHH
Q 020623 97 LVALQPSYNEHNIFYGPFDEEFLEEFIKQNF--LPLSVPINQDTLNLLKDDKRKI-VLAIVEDETEEKSQKLVTTLKAAA 173 (323)
Q Consensus 97 ivv~k~~~~~~~~y~g~~~~~~L~~fI~~~~--~Plv~~~t~~~~~~~~~~~~~~-v~~f~~~~~~e~~~~~~~~l~~~A 173 (323)
+++|+. ......|.|..+.++|..|+.... -+.+..++.+++..+...+.++ ++.|... .=..-+.+...+.++|
T Consensus 85 l~~~~~-~~~~~~~~G~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~F~a~-wC~~C~~~~~~~~~~~ 162 (229)
T 2ywm_A 85 IVIEGD-KDYGIRYIGLPAGLEFTTLINGIFHVSQRKPQLSEKTLELLQVVDIPIEIWVFVTT-SCGYCPSAAVMAWDFA 162 (229)
T ss_dssp EEEESS-SCCCEEEESCCCTTHHHHHHHHHHHHHTTCCSCCHHHHHHHTTCCSCEEEEEEECT-TCTTHHHHHHHHHHHH
T ss_pred EEEECC-CcccceecCCccHHHHHHHHHHHHhccCCccCCCHHHHHHHHhcCCCeEEEEEECC-CCcchHHHHHHHHHHH
Confidence 999974 234456888888888999998753 2457889999999887666777 4446553 1123456778899999
Q ss_pred HhCCCeEEEEEcCcchhhHhhhcCCcCCCCCCeEEEEeCCcceeeccCCCCCCCCCCHHHHHHHHHHHHcC
Q 020623 174 SANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEGYREG 244 (323)
Q Consensus 174 ~~~~~l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~~~~~G 244 (323)
++++++.|+.+|.+..+.+++.||+ ..+|.+++ +++.... .+..+.+.|.+|++..++.
T Consensus 163 ~~~~~v~~~~vd~~~~~~l~~~~~v---~~~Pt~~~---~G~~~~~------~G~~~~~~l~~~l~~~~~~ 221 (229)
T 2ywm_A 163 LANDYITSKVIDASENQDLAEQFQV---VGVPKIVI---NKGVAEF------VGAQPENAFLGYIMAVYEK 221 (229)
T ss_dssp HHCTTEEEEEEEGGGCHHHHHHTTC---CSSSEEEE---GGGTEEE------ESCCCHHHHHHHHHHHHHH
T ss_pred HHCCCeEEEEEECCCCHHHHHHcCC---cccCEEEE---CCEEEEe------eCCCCHHHHHHHHHHHhhh
Confidence 9996699999999988888999999 57999988 3332212 2346788999999988753
|
| >2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A | Back alignment and structure |
|---|
Probab=98.99 E-value=4.5e-08 Score=95.71 Aligned_cols=226 Identities=12% Similarity=0.185 Sum_probs=157.4
Q ss_pred ccccCCC-C---ChHHHHHHHHHhcCCCceecCChHHHHHHHHhcCCcccEEEEecCC-------hhHHHHHHHhhcCce
Q 020623 5 PTEYYGP-R---KAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFGLD-------ESVMSNLALKYKKKA 73 (323)
Q Consensus 5 ~~eY~G~-R---~a~~Iv~~l~k~~~p~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~-------~~~f~~~A~~~~~~~ 73 (323)
+..|.|. . +.+.|.+|+....-|.+..++ .+.+..+.+... ++++.|+.. ...+.++|.++++.+
T Consensus 195 ~~~~~g~~~~~~~~~~l~~fi~~~~~p~v~~~t-~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~~~l~~~a~~~~~~i 270 (504)
T 2b5e_A 195 PVVYNGKKADIADADVFEKWLQVEALPYFGEID-GSVFAQYVESGL---PLGYLFYNDEEELEEYKPLFTELAKKNRGLM 270 (504)
T ss_dssp EEECCSCHHHHTSHHHHHHHHHHHSSCSSCBCC-HHHHHHHHHTTS---CEEEEEESSHHHHHHHHHHHHHHHHHTTTTC
T ss_pred ccccCCcccccCCHHHHHHHHHhcccCCcccCC-HhHHHHHhcCCC---cEEEEEecCcccHHHHHHHHHHHHHhcCCee
Confidence 4568887 5 999999999999999999994 678888876654 345544432 136788999999889
Q ss_pred eEEeeccc-chhhHhhcCC-CCCCeEEEecCCCCCCcccc--CC-----------CCHHHHHHHHHhhc-----------
Q 020623 74 WFAVAKDF-SEDTMVLYDF-DKVPALVALQPSYNEHNIFY--GP-----------FDEEFLEEFIKQNF----------- 127 (323)
Q Consensus 74 ~F~~~~~~-~~~~~~~~~~-~~~p~ivv~k~~~~~~~~y~--g~-----------~~~~~L~~fI~~~~----------- 127 (323)
.|+.++.. ...++..+|+ ...|.+++++.....++.+. ++ ++.+.|..|+....
T Consensus 271 ~F~~id~~~~~~~~~~~gl~~~~P~v~i~~~~~~~ky~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~~~~g~~~p~~~s~ 350 (504)
T 2b5e_A 271 NFVSIDARKFGRHAGNLNMKEQFPLFAIHDMTEDLKYGLPQLSEEAFDELSDKIVLESKAIESLVKDFLKGDASPIVKSQ 350 (504)
T ss_dssp EEEEEEHHHHTTHHHHTTCCSCSSEEEEEETTTTEEEECCCCCHHHHHTCCSCCCCCHHHHHHHHHHHHHTCCCCCCCCC
T ss_pred EEEEEehhhhHHHHHHcCCcccCCEEEEEeCCcCcccCCCCCccchhhccccccccCHHHHHHHHHHHHcCCCChhhhcC
Confidence 99887431 2235667777 24799999886323333333 44 78899999998652
Q ss_pred -C-----CCeeecChhhHHHhh-cCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCC----CeEEEEEcCcchhhHhhhc
Q 020623 128 -L-----PLSVPINQDTLNLLK-DDKRKIVLAIVEDETEEKSQKLVTTLKAAASANR----ELVFCYVGIKQFADFADTF 196 (323)
Q Consensus 128 -~-----Plv~~~t~~~~~~~~-~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~----~l~F~~vd~~~~~~~~~~~ 196 (323)
. ..+..++.+++.... ..++++++.|... -=..-+.+...+.++|+.++ ++.|+.+|.+... ... +
T Consensus 351 ~~p~~~~~~v~~l~~~~f~~~v~~~~k~vlv~F~a~-wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~~~-~~~-~ 427 (504)
T 2b5e_A 351 EIFENQDSSVFQLVGKNHDEIVNDPKKDVLVLYYAP-WCGHCKRLAPTYQELADTYANATSDVLIAKLDHTEND-VRG-V 427 (504)
T ss_dssp CCCCCCSCSEEEECTTTHHHHHHCTTCCEEEEEECT-TCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEGGGCC-CSS-C
T ss_pred CCCccccccceecccccHHHhhccCCCCEEEEEECC-CChhHHHHhHHHHHHHHHhhccCCcEEEEEecCCccc-ccc-C
Confidence 1 247788889998764 4567888777752 11234567778888888775 4999999987542 334 7
Q ss_pred CCcCCCCCCeEEEEeCCcc---eeeccCCCCCCCCCCHHHHHHHHHHHHcCccc
Q 020623 197 EANKKSKLPKMVVWDGNEN---YLTVIGSESIDEEDQGSQISRFLEGYREGRTE 247 (323)
Q Consensus 197 gl~~~~~~P~ivI~~~~~k---Y~~~~~~~~~~~~~t~~~I~~Fi~~~~~Gkl~ 247 (323)
++ ...|.++++...++ ..+ .+..+.+.|.+||+.....++.
T Consensus 428 ~v---~~~Pt~~~~~~G~~~~~~~~-------~G~~~~~~l~~~i~~~~~~~~~ 471 (504)
T 2b5e_A 428 VI---EGYPTIVLYPGGKKSESVVY-------QGSRSLDSLFDFIKENGHFDVD 471 (504)
T ss_dssp CC---SSSSEEEEECCTTSCCCCBC-------CSCCCHHHHHHHHHHHCTTCCC
T ss_pred Cc---eecCeEEEEeCCceecceEe-------cCCCCHHHHHHHHHhcCCCCCC
Confidence 88 57999998854322 222 3456889999999998655443
|
| >1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A | Back alignment and structure |
|---|
Probab=98.99 E-value=3.8e-08 Score=85.54 Aligned_cols=198 Identities=13% Similarity=0.118 Sum_probs=134.7
Q ss_pred cCChHHHHHHH-HhcCCcccEEEEecC--C-------hhHHHHHHHhhcCceeEEeecc-c--chhhHhhcCCCCCCeEE
Q 020623 32 LNSDAEVSDFV-ENAGTFFPLFIGFGL--D-------ESVMSNLALKYKKKAWFAVAKD-F--SEDTMVLYDFDKVPALV 98 (323)
Q Consensus 32 i~s~~~l~~fl-~~~~~~~~~vVgf~~--~-------~~~f~~~A~~~~~~~~F~~~~~-~--~~~~~~~~~~~~~p~iv 98 (323)
..+.+++++++ +..... ++++.|.. . .+.+.++|.. .+.+.|+..+. . ..+++.+|++...|+++
T Consensus 6 ~~~~~~~~~~~~~~~~~~-v~lv~f~~~~~C~~C~~~~~~~~~la~~-~~~v~~~~vd~~~~~~~~~~~~~~v~~~Pt~~ 83 (226)
T 1a8l_A 6 DADKKVIKEEFFSKMVNP-VKLIVFVRKDHCQYCDQLKQLVQELSEL-TDKLSYEIVDFDTPEGKELAKRYRIDRAPATT 83 (226)
T ss_dssp HHHHHHHHHHTGGGCCSC-EEEEEEECSSSCTTHHHHHHHHHHHHTT-CTTEEEEEEETTSHHHHHHHHHTTCCSSSEEE
T ss_pred HHHHHHHHHHHHHhcCCC-eEEEEEecCCCCchhHHHHHHHHHHHhh-CCceEEEEEeCCCcccHHHHHHcCCCcCceEE
Confidence 34567777777 432221 34455543 2 1366777754 55677776642 2 45788899999999999
Q ss_pred EecCCCCCCccccCCCCHHHHHHHHHhhcC--CCeeecChhhHHHhhcCCCcE-EEEEEeCCChhHHHHHHHHHHHHHHh
Q 020623 99 ALQPSYNEHNIFYGPFDEEFLEEFIKQNFL--PLSVPINQDTLNLLKDDKRKI-VLAIVEDETEEKSQKLVTTLKAAASA 175 (323)
Q Consensus 99 v~k~~~~~~~~y~g~~~~~~L~~fI~~~~~--Plv~~~t~~~~~~~~~~~~~~-v~~f~~~~~~e~~~~~~~~l~~~A~~ 175 (323)
+|+++......|.|..+.+.+..|+....- .....++.+++..+...++++ ++.|... .=..-+.+...+.++|+.
T Consensus 84 ~~~~g~~~~~~~~G~~~~~~l~~~l~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~v~F~a~-wC~~C~~~~p~~~~l~~~ 162 (226)
T 1a8l_A 84 ITQDGKDFGVRYFGLPAGHEFAAFLEDIVDVSREETNLMDETKQAIRNIDQDVRILVFVTP-TCPYCPLAVRMAHKFAIE 162 (226)
T ss_dssp EEETTBCCSEEEESCCCTTHHHHHHHHHHHHHHTCCCCCHHHHHHHTTCCSCEEEEEEECS-SCTTHHHHHHHHHHHHHH
T ss_pred EEcCCceeeEEEeccCcHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHhcCCCcEEEEEeCC-CCCccHHHHHHHHHHHHh
Confidence 997642223567787777788899877432 235678888988887666777 6666652 112235666778888888
Q ss_pred CC-----CeEEEEEcCcchhhHhhhcCCcCCCCCCeEEEEeCCc-ceeeccCCCCCCCCCCHHHHHHHHHHHH
Q 020623 176 NR-----ELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNE-NYLTVIGSESIDEEDQGSQISRFLEGYR 242 (323)
Q Consensus 176 ~~-----~l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI~~~~~-kY~~~~~~~~~~~~~t~~~I~~Fi~~~~ 242 (323)
++ ++.|+.+|.+..+.+++.||+ ..+|.+++....+ ...+ .+..+.+.|.+|++..+
T Consensus 163 ~~~~~~~~v~~~~vd~~~~~~l~~~~~v---~~~Pt~~~~~~G~~~~~~-------~G~~~~~~l~~~l~~~l 225 (226)
T 1a8l_A 163 NTKAGKGKILGDMVEAIEYPEWADQYNV---MAVPKIVIQVNGEDRVEF-------EGAYPEKMFLEKLLSAL 225 (226)
T ss_dssp HHHTTCCCEEEEEEEGGGCHHHHHHTTC---CSSCEEEEEETTEEEEEE-------ESCCCHHHHHHHHHHHH
T ss_pred cccccCCcEEEEEEEcccCHHHHHhCCC---cccCeEEEEeCCceeEEE-------cCCCCHHHHHHHHHHhh
Confidence 76 499999999988888899999 5799988876432 2222 23467789999998875
|
| >2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.91 E-value=3.9e-08 Score=92.97 Aligned_cols=194 Identities=12% Similarity=0.110 Sum_probs=122.2
Q ss_pred CceecCChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhc------CceeEEeecc-cchhhHhhcCCC
Q 020623 28 DVSILNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYK------KKAWFAVAKD-FSEDTMVLYDFD 92 (323)
Q Consensus 28 ~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~------~~~~F~~~~~-~~~~~~~~~~~~ 92 (323)
.|..|+ .++++.+++.++ +++|-|+.. ...|.++|..++ +.+.|+.++. ...+++.++++.
T Consensus 6 ~v~~l~-~~~f~~~~~~~~---~vlV~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~v~~~~Vd~~~~~~l~~~~~v~ 81 (382)
T 2r2j_A 6 EITSLD-TENIDEILNNAD---VALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDCDQHSDIAQRYRIS 81 (382)
T ss_dssp --CBCC-TTTHHHHHHHCS---EEEEEEECTTCHHHHHHHHHHHHHHHHHTTCC---CCEEEEEEETTTCHHHHHHTTCC
T ss_pred ceEECC-HHHHHHHHhcCC---eEEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEECCccHHHHHhcCCC
Confidence 366674 588888887776 577777543 247888998884 3467776643 357789999999
Q ss_pred CCCeEEEecCCCCCCc-cccCCCCHHHHHHHHHhhcCCCeeecCh-hhHHHhhcCCCcEEEEEEeCCChhHHHHHHHHHH
Q 020623 93 KVPALVALQPSYNEHN-IFYGPFDEEFLEEFIKQNFLPLSVPINQ-DTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLK 170 (323)
Q Consensus 93 ~~p~ivv~k~~~~~~~-~y~g~~~~~~L~~fI~~~~~Plv~~~t~-~~~~~~~~~~~~~v~~f~~~~~~e~~~~~~~~l~ 170 (323)
+.|++++|+++ .... .|.|..+.+.|.+||.+..-|.+..++. +.+.. +....+.+++|+...+ ....+.+.
T Consensus 82 ~~Pt~~~f~~G-~~~~~~~~G~~~~~~l~~~i~~~~~~~v~~l~~~~~l~~-l~~~~~~~v~ff~~~~----~~~~~~f~ 155 (382)
T 2r2j_A 82 KYPTLKLFRNG-MMMKREYRGQRSVKALADYIRQQKSDPIQEIRDLAEITT-LDRSKRNIIGYFEQKD----SDNYRVFE 155 (382)
T ss_dssp EESEEEEEETT-EEEEEECCSCCSHHHHHHHHHHHHSCCCEEC-------------CCEEEEEESCSS----SHHHHHHH
T ss_pred cCCEEEEEeCC-cEeeeeecCcchHHHHHHHHHHhccCCceecCCHHHHHH-hcCCCCEEEEEECCCC----ChhHHHHH
Confidence 99999999863 1112 5889999999999999999999999964 45666 4445566666665321 22356789
Q ss_pred HHHHhCCC-eEEEEEcCcchhhHhhhcCCcCCCCCCeEEEEeCC--cceeeccCCCCCCCCC-CHHHHHHHHHHHHcCc
Q 020623 171 AAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGN--ENYLTVIGSESIDEED-QGSQISRFLEGYREGR 245 (323)
Q Consensus 171 ~~A~~~~~-l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI~~~~--~kY~~~~~~~~~~~~~-t~~~I~~Fi~~~~~Gk 245 (323)
++|..+++ +.|+.+... +...+++ ...| ++..... .....+ ++.+ +.+.|.+||+...-..
T Consensus 156 ~~A~~~~~~~~F~~~~~~----~~~~~~v---~~~p-i~~~~~~~~~~~~~y------~g~~~~~~~l~~fi~~~~~p~ 220 (382)
T 2r2j_A 156 RVANILHDDCAFLSAFGD----VSKPERY---SGDN-IIYKPPGHSAPDMVY------LGAMTNFDVTYNWIQDKCVPL 220 (382)
T ss_dssp HHHHHHTTTCEEEEEESC----C-----------CE-EEEECSSSSSCCEEC------CSCTTCHHHHHHHHHHHHSCS
T ss_pred HHHHHhhccceEEEEehh----hHHhhCC---CCCc-eEECCCCCCCcCccc------CCCCCCHHHHHHHHHhcccCc
Confidence 99999987 888877652 3456677 3467 5444431 211222 2346 8899999999876443
|
| >3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.72 E-value=2.6e-06 Score=75.02 Aligned_cols=195 Identities=13% Similarity=0.096 Sum_probs=126.8
Q ss_pred CCceecCChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcC---ceeEEeec---ccchhhHhhcCCC
Q 020623 27 PDVSILNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKK---KAWFAVAK---DFSEDTMVLYDFD 92 (323)
Q Consensus 27 p~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~---~~~F~~~~---~~~~~~~~~~~~~ 92 (323)
.+|..|+ .++++..+.+.+. +++|-|... ...|.++|.++.+ .+.|+.++ +...+++.++++.
T Consensus 12 ~~v~~l~-~~~f~~~i~~~~~--~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~~~~~~l~~~~~v~ 88 (244)
T 3q6o_A 12 DPLTLLQ-ADTVRGAVLGSRS--AWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEETNSAVCRDFNIP 88 (244)
T ss_dssp SSSEEEC-TTTHHHHHSSCSS--EEEEEEECTTCHHHHHHHHHHHHHHHHTGGGTTTEEEEEEETTSTTTHHHHHHTTCC
T ss_pred CCceeCC-hhhHHHHHhhCCC--eEEEEEECCcCHHHHHHHHHHHHHHHHHHhccCcEEEEEEeCCchhhHHHHHHcCCC
Confidence 3578885 5788877755543 577777643 2578899999876 67776664 2356789999999
Q ss_pred CCCeEEEecCCCC---CCc-cccCCCCHHHHHHHHHhhc----------CCCeeecChhhHHHhhc--CCCcEEEEEEeC
Q 020623 93 KVPALVALQPSYN---EHN-IFYGPFDEEFLEEFIKQNF----------LPLSVPINQDTLNLLKD--DKRKIVLAIVED 156 (323)
Q Consensus 93 ~~p~ivv~k~~~~---~~~-~y~g~~~~~~L~~fI~~~~----------~Plv~~~t~~~~~~~~~--~~~~~v~~f~~~ 156 (323)
..|++++|+++.. ... .+.| .+.+.|.+||.+.. .|.+...+..++..++. ...+++++|...
T Consensus 89 ~~Pt~~~~~~g~~~~~g~~~~~~g-~~~~~l~~~i~~~l~~~~~~~p~~~p~l~~~~~~~l~~~~~~~~~~~~al~f~~~ 167 (244)
T 3q6o_A 89 GFPTVRFFXAFTXNGSGAVFPVAG-ADVQTLRERLIDALESHHDTWPPACPPLEPAXLEEIDGFFARNNEEYLALIFEXG 167 (244)
T ss_dssp SSSEEEEECTTCCSSSCEECCCTT-CCHHHHHHHHHHHHHTCTTSCCTTSCCCSCCCHHHHHTHHHHCCCSEEEEEEECT
T ss_pred ccCEEEEEeCCCcCCCCeeEecCC-CCHHHHHHHHHHHHHhccccCCCCCCCcccccHHHHHHHhhcCCCceEEEEEEEC
Confidence 9999999986322 111 3345 57777777776542 23445667778877663 345677766653
Q ss_pred CChhHHHHHHHHHHHHHHhCC---CeEEEEEcCcchhhHhhhcCCcCCCCCCeEEEEeCCcceeeccCCCCCCCCCCHHH
Q 020623 157 ETEEKSQKLVTTLKAAASANR---ELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYLTVIGSESIDEEDQGSQ 233 (323)
Q Consensus 157 ~~~e~~~~~~~~l~~~A~~~~---~l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI~~~~~kY~~~~~~~~~~~~~t~~~ 233 (323)
++. ..++++..+. ++.+..++.. ...+++.||+ ..+|++++++.+++..... ....+.+.
T Consensus 168 ~~~--------~~~~~~~d~~~~~~i~v~~~~~~-~~~l~~~f~v---~~~Pslvl~~~~g~~~~~~-----~~~~~r~~ 230 (244)
T 3q6o_A 168 GSY--------LAREVALDLSQHKGVAVRRVLNT-EANVVRKFGV---TDFPSCYLLFRNGSVSRVP-----VLMESRSF 230 (244)
T ss_dssp TCC--------HHHHHHHHTTTCTTEEEEEEETT-CHHHHHHHTC---CCSSEEEEEETTSCEEECC-----CSSSSHHH
T ss_pred Ccc--------hHHHHHHHhccCCceEEEEEeCc-hHHHHHHcCC---CCCCeEEEEeCCCCeEeec-----cccccHHH
Confidence 211 3444555544 3777776654 3578899999 4689999999987654432 12346677
Q ss_pred HHHHHHHHH
Q 020623 234 ISRFLEGYR 242 (323)
Q Consensus 234 I~~Fi~~~~ 242 (323)
+..+++.+.
T Consensus 231 ~~~~l~~~~ 239 (244)
T 3q6o_A 231 YTAYLQRLS 239 (244)
T ss_dssp HHHHHHTC-
T ss_pred HHHHHHhCC
Confidence 777776553
|
| >3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A | Back alignment and structure |
|---|
Probab=98.70 E-value=1.6e-07 Score=82.12 Aligned_cols=124 Identities=17% Similarity=0.277 Sum_probs=96.9
Q ss_pred CCcccccCCCCChHHHHHHHHHhcCCC-------ceecCChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHH
Q 020623 2 HGIPTEYYGPRKAELLVRYLKKFVAPD-------VSILNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLA 66 (323)
Q Consensus 2 ~G~~~eY~G~R~a~~Iv~~l~k~~~p~-------v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A 66 (323)
+|....|.|.++++.|.+|+.+...+. +..+ +.++++.++..++ +++|.|... ...+.++|
T Consensus 98 ~g~~~~~~g~~~~~~l~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~v~f~a~wC~~C~~~~p~~~~~a 173 (241)
T 3idv_A 98 KGQAVDYEGSRTQEEIVAKVREVSQPDWTPPPEVTLVL-TKENFDEVVNDAD---IILVEFYAPWCGHCKKLAPEYEKAA 173 (241)
T ss_dssp TTEEEECCSCSCHHHHHHHHHHHHSTTCCCCCCSSEEC-CTTTHHHHHHHCS---EEEEEEECTTCTGGGGTHHHHHHHH
T ss_pred CCCcccccCcccHHHHHHHHhhccCcccccccccceec-cHHHHHHhhccCC---eEEEEEECCCCHHHHHhHHHHHHHH
Confidence 577778999999999999999997763 4445 6789999998776 467777542 24788889
Q ss_pred HhhcCc---eeEEeec-ccchhhHhhcCCCCCCeEEEecCCCCCCccccCCCCHHHHHHHHHhhcCCCe
Q 020623 67 LKYKKK---AWFAVAK-DFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQNFLPLS 131 (323)
Q Consensus 67 ~~~~~~---~~F~~~~-~~~~~~~~~~~~~~~p~ivv~k~~~~~~~~y~g~~~~~~L~~fI~~~~~Plv 131 (323)
.++.+. +.|+.++ +...+++.++++.+.|++++|++ ++...|.|..+.+.|.+||.++.-|.+
T Consensus 174 ~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~--g~~~~~~g~~~~~~l~~~l~~~~~~~~ 240 (241)
T 3idv_A 174 KELSKRSPPIPLAKVDATAETDLAKRFDVSGYPTLKIFRK--GRPYDYNGPREKYGIVDYMIEQSGAAA 240 (241)
T ss_dssp HHHHTSSSCCCEEEEETTTCHHHHHHTTCCSSSEEEEEET--TEEEECCSCCSHHHHHHHHHHHTTCTT
T ss_pred HHHhccCCcEEEEEEECCCCHHHHHHcCCcccCEEEEEEC--CeEEEecCCCCHHHHHHHHHhhhCCCC
Confidence 888654 6676653 23568899999999999999986 344458899999999999999987753
|
| >2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=98.58 E-value=5e-06 Score=73.54 Aligned_cols=196 Identities=13% Similarity=0.095 Sum_probs=128.4
Q ss_pred ceecCChHHHHHHHHhcCCcccEEEEec-CC--h-------hHHHHHHHhh---cCc--eeEEeec-ccchhhHhhcCCC
Q 020623 29 VSILNSDAEVSDFVENAGTFFPLFIGFG-LD--E-------SVMSNLALKY---KKK--AWFAVAK-DFSEDTMVLYDFD 92 (323)
Q Consensus 29 v~~i~s~~~l~~fl~~~~~~~~~vVgf~-~~--~-------~~f~~~A~~~---~~~--~~F~~~~-~~~~~~~~~~~~~ 92 (323)
....++.++|+++++.-+. ++.|.|+ .+ . +.+.++|+.+ ++. +.|+..+ +..++++.+|++.
T Consensus 8 ~~~~~~~~ql~~~~~~~~~--pv~v~~~~~~~~c~~c~~~~~~l~ela~~~~~~~~~~~v~~~~vd~d~~~~~~~~~gv~ 85 (243)
T 2hls_A 8 DLSEDFRRELRETLAEMVN--PVEVHVFLSKSGCETCEDTLRLMKLFEEESPTRNGGKLLKLNVYYRESDSDKFSEFKVE 85 (243)
T ss_dssp CCCHHHHHHHHHHHTTCCS--CEEEEEEECSSSCTTHHHHHHHHHHHHHHSCEETTEESEEEEEEETTTTHHHHHHTTCC
T ss_pred hCCHHHHHHHHHHHHhCCC--CEEEEEEeCCCCCCchHHHHHHHHHHHHhccCCCCCceeEEEEecCCcCHHHHHhcCCC
Confidence 3445567889888876432 4555543 22 1 2567778763 323 7776653 2356788899998
Q ss_pred CCCeEEEecCCCCCCccccCCCCHHHHHHHHHhhcC--CCeeecChhhHHHhhcCCCcE-EEEEEeCCChhHHHHHHHHH
Q 020623 93 KVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQNFL--PLSVPINQDTLNLLKDDKRKI-VLAIVEDETEEKSQKLVTTL 169 (323)
Q Consensus 93 ~~p~ivv~k~~~~~~~~y~g~~~~~~L~~fI~~~~~--Plv~~~t~~~~~~~~~~~~~~-v~~f~~~~~~e~~~~~~~~l 169 (323)
..|+++++ + + ...|.|......+..|+....- ..-..++.++...+.....++ ++.|+.. .=..-+.+...+
T Consensus 86 ~~Pt~~i~-~--g-~~~~~G~~~~~~l~~fv~~~l~~~~~~~~l~~~~~~~~~~~~~~~~vv~F~a~-wC~~C~~~~p~l 160 (243)
T 2hls_A 86 RVPTVAFL-G--G-EVRWTGIPAGEEIRALVEVIMRLSEDESGLEDATKEALKSLKGRVHIETIITP-SCPYCPYAVLLA 160 (243)
T ss_dssp SSSEEEET-T--T-TEEEESCCCTTHHHHHHHHHHHHHTTCCCCCHHHHHHHHHCCSCEEEEEEECS-SCSSHHHHHHHH
T ss_pred cCCEEEEE-C--C-ceeEcCCCcHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHcCCCcEEEEEECC-CCCCcHHHHHHH
Confidence 89999998 3 2 4557776666678888765321 112245666766665433444 4556542 112235677788
Q ss_pred HHHHHhC-----CCeEEEEEcCcchhhHhhhcCCcCCCCCCeEEEEeCCcceeeccCCCCCCCCCCHHHHHHHHHHHHcC
Q 020623 170 KAAASAN-----RELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEGYREG 244 (323)
Q Consensus 170 ~~~A~~~-----~~l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~~~~~G 244 (323)
.++|..+ +++.+..+|+..++.+++.+|+ ...|.+++ +++..+ .+..+.+.|.+|++..+..
T Consensus 161 ~~la~~~~~~~~~~v~~~~vd~~~~~~~~~~~~V---~~vPt~~i---~G~~~~-------~G~~~~~~l~~~l~~~~~~ 227 (243)
T 2hls_A 161 HMFAYEAWKQGNPVILSEAVEAYENPDIADKYGV---MSVPSIAI---NGYLVF-------VGVPYEEDFLDYVKSAAEG 227 (243)
T ss_dssp HHHHHHHHHTTCCCEEEEEEETTTCHHHHHHTTC---CSSSEEEE---TTEEEE-------ESCCCHHHHHHHHHHHHTT
T ss_pred HHHHHHcccccCCcEEEEEEECccCHHHHHHcCC---eeeCeEEE---CCEEEE-------eCCCCHHHHHHHHHHHhhc
Confidence 8888887 4599999999988888888999 57999988 443222 2346789999999998764
|
| >3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=1.7e-05 Score=77.94 Aligned_cols=176 Identities=11% Similarity=0.093 Sum_probs=119.0
Q ss_pred CceecCChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcC---ceeEEeecc---cchhhHhhcCCCC
Q 020623 28 DVSILNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKK---KAWFAVAKD---FSEDTMVLYDFDK 93 (323)
Q Consensus 28 ~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~---~~~F~~~~~---~~~~~~~~~~~~~ 93 (323)
+|..++ .++++..+.+.+. +++|-|... ...+.++|.++.+ .+.|+.++. ...+++.+|++..
T Consensus 13 ~V~~Lt-~~~f~~~v~~~~k--~vlV~FyA~WC~pCk~~~P~l~~la~~~~~~~~~v~~~~VD~d~d~~~~l~~~~~V~~ 89 (519)
T 3t58_A 13 PLTLLD-ADSVRPTVLGSSS--AWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAEETNSAVCREFNIAG 89 (519)
T ss_dssp SSEEEC-TTTHHHHHSSCSS--EEEEEEECTTSHHHHHHHHHHHHHHHHHGGGTTTEEEEEEETTSGGGHHHHHHTTCCS
T ss_pred CcEECC-hHHHHHHHHhCCC--eEEEEEECCCCHHHHHHHHHHHHHHHHhhCcCCcEEEEEEECCccccHHHHHHcCCcc
Confidence 477785 5788887755433 577877653 2478899999876 577776642 3567889999999
Q ss_pred CCeEEEecCCCC---CCccccCCCCHHHHHHHHHhhc----------CCCeeecChhhHHHhhcC--CCcEEEEEEeCCC
Q 020623 94 VPALVALQPSYN---EHNIFYGPFDEEFLEEFIKQNF----------LPLSVPINQDTLNLLKDD--KRKIVLAIVEDET 158 (323)
Q Consensus 94 ~p~ivv~k~~~~---~~~~y~g~~~~~~L~~fI~~~~----------~Plv~~~t~~~~~~~~~~--~~~~v~~f~~~~~ 158 (323)
.|++++|+++.. ....+.|..+.+.|.+||.+.. .|.+..++.+++..++.. ..+++++|.+.++
T Consensus 90 ~PTl~~f~~g~~~G~~~~~~~g~~~~~~L~~~l~~~l~~~~~~~P~~~p~l~~it~~~l~~~l~~~~~~~vallF~~~~s 169 (519)
T 3t58_A 90 FPTVRFFQAFTKNGSGATLPGAGANVQTLRMRLIDALESHRDTWPPACPPLEPAKLNDIDGFFTRNKADYLALVFEREDS 169 (519)
T ss_dssp BSEEEEECTTCCSCCCEEECCSSCCHHHHHHHHHHHHTTCCSCCCTTCCCCSBCCHHHHTTGGGSCCCSEEEEEEECTTC
T ss_pred cCEEEEEcCcccCCCceeEecCCCCHHHHHHHHHHHHhhccccCCCCCCccCcCCHHHHHHHhccCCCCeEEEEecCCch
Confidence 999999986322 1234557778888888776542 244677778888777653 3566676655321
Q ss_pred hhHHHHHHHHHHHHHHhCC---CeEEEEEcCcchhhHhhhcCCcCCCCCCeEEEEeCCcceee
Q 020623 159 EEKSQKLVTTLKAAASANR---ELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYLT 218 (323)
Q Consensus 159 ~e~~~~~~~~l~~~A~~~~---~l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI~~~~~kY~~ 218 (323)
...++++..+. ++.+..++... ..+++.||+ ..+|.+++++.+++...
T Consensus 170 --------~~~~~~~ldl~~~~~v~v~~v~~~~-~~l~~kfgV---~~~Pslvl~~~nGk~~~ 220 (519)
T 3t58_A 170 --------YLGREVTLDLSQYHAVAVRRVLNTE-SDLVNKFGV---TDFPSCYLLLRNGSVSR 220 (519)
T ss_dssp --------CHHHHHHHHTTTCTTEEEEEEETTC-HHHHHHHTC---CCSSEEEEEETTSCEEE
T ss_pred --------HHHHHHHHHhhccCCeeEEEecCch-HHHHHHcCC---CCCCeEEEEeCCCceee
Confidence 13445555554 37777666542 467899999 46899999999876543
|
| >4f9z_D Endoplasmic reticulum resident protein 27; thioredoxin fold, ER foldase, ERP57, binding protein; HET: PE3 PE4; 2.20A {Homo sapiens} PDB: 2l4c_A | Back alignment and structure |
|---|
Probab=98.47 E-value=2e-06 Score=75.24 Aligned_cols=120 Identities=13% Similarity=0.112 Sum_probs=87.7
Q ss_pred cccccC----CCCChHHHHHHHHHhcCCCceecCChHHHHHHHHhcCCcccEEEEecC-C-------hhHHHHHHHhhcC
Q 020623 4 IPTEYY----GPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFGL-D-------ESVMSNLALKYKK 71 (323)
Q Consensus 4 ~~~eY~----G~R~a~~Iv~~l~k~~~p~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~-~-------~~~f~~~A~~~~~ 71 (323)
.+.+|. |+|++++|++|++.+..|.|.+++ .+.+.++.+.... ..++.|.+ + .+.|+++|+++++
T Consensus 86 ~~~~~~~~~~g~~~~~~l~~fi~~~~~plv~e~t-~~n~~~~~~~~~~--~~~l~f~~~~~~~~~~~~~~~~~vAk~~k~ 162 (227)
T 4f9z_D 86 EQLNLEDEDIESIDATKLSRFIEINSLHMVTEYN-PVTVIGLFNSVIQ--IHLLLIMNKASPEYEENMHRYQKAAKLFQG 162 (227)
T ss_dssp EEEEECHHHHHTCCHHHHHHHHHHHCCCSEEECC-HHHHHHHHHSSCC--EEEEEEECTTSTTHHHHHHHHHHHHHHTTT
T ss_pred ccccccccccCCCCHHHHHHHHHHhCCCceeecC-cccHHHHhccCCc--eEEEEEEcCCcchHHHHHHHHHHHHHHhhC
Confidence 346788 489999999999999999999995 6778887766532 23344422 1 1367899999999
Q ss_pred ceeEEeeccc---chhhHhhcCCC--CCCeEEEecCCCCCCcccc-CCCCHHHHHHHHHhh
Q 020623 72 KAWFAVAKDF---SEDTMVLYDFD--KVPALVALQPSYNEHNIFY-GPFDEEFLEEFIKQN 126 (323)
Q Consensus 72 ~~~F~~~~~~---~~~~~~~~~~~--~~p~ivv~k~~~~~~~~y~-g~~~~~~L~~fI~~~ 126 (323)
.+.|+.++.. ...++..+|+. ..|+++++....+..+.+. ++++.+.|++|++.-
T Consensus 163 ~i~F~~vd~~~~~~~~~l~~fgl~~~~~P~~~i~~~~~~~ky~~~~~~~t~~~i~~Fv~~~ 223 (227)
T 4f9z_D 163 KILFILVDSGMKENGKVISFFKLKESQLPALAIYQTLDDEWDTLPTAEVSVEHVQNFCDGF 223 (227)
T ss_dssp TCEEEEEETTSGGGHHHHHHTTCCGGGCSEEEEEESSSCCEEEETTCCCCHHHHHHHHHHH
T ss_pred CEEEEEeCCccHhHHHHHHHcCCCcccCCEEEEEECCCCccccCCcCCCCHHHHHHHHHHH
Confidence 9999887532 22456788886 6799999986433334444 789999999999764
|
| >3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=98.19 E-value=2.4e-05 Score=58.99 Aligned_cols=104 Identities=8% Similarity=0.173 Sum_probs=79.9
Q ss_pred CCeeecChhhHHHhhcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC-eEEEEEcCcchhhHhhhcCCcCCCCCCeE
Q 020623 129 PLSVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKM 207 (323)
Q Consensus 129 Plv~~~t~~~~~~~~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~-l~F~~vd~~~~~~~~~~~gl~~~~~~P~i 207 (323)
+.+..+|.+++......++++++.|... .-..-..+...+.++++.+++ +.|+.+|.+..+.+++.||+ ...|.+
T Consensus 4 ~~v~~l~~~~~~~~~~~~~~~lv~f~~~-~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i---~~~Pt~ 79 (109)
T 3tco_A 4 DVTLVLTEENFDEVIRNNKLVLVDCWAE-WCAPCHLYEPIYKKVAEKYKGKAVFGRLNVDENQKIADKYSV---LNIPTT 79 (109)
T ss_dssp CCCEECCTTTHHHHHHHSSEEEEEEECT-TCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTCHHHHHHTTC---CSSSEE
T ss_pred CeEEEecHHHHHHHHhcCCeEEEEEECC-CCHHHHhhhHHHHHHHHHhCCCceEEEEccccCHHHHHhcCc---ccCCEE
Confidence 5678899999998877778887777763 223446777899999999997 99999999988888999999 579999
Q ss_pred EEEeCCcceeeccCCCCCCCCCCHHHHHHHHHHHH
Q 020623 208 VVWDGNENYLTVIGSESIDEEDQGSQISRFLEGYR 242 (323)
Q Consensus 208 vI~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~~~~ 242 (323)
+++...+..... .+..+.+.|.+|++.++
T Consensus 80 ~~~~~g~~~~~~------~g~~~~~~l~~~l~~~l 108 (109)
T 3tco_A 80 LIFVNGQLVDSL------VGAVDEDTLESTVNKYL 108 (109)
T ss_dssp EEEETTEEEEEE------ESCCCHHHHHHHHHHHC
T ss_pred EEEcCCcEEEee------eccCCHHHHHHHHHHHh
Confidence 988433222212 23468899999999875
|
| >3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=98.18 E-value=3.8e-05 Score=58.19 Aligned_cols=104 Identities=13% Similarity=0.249 Sum_probs=79.4
Q ss_pred CeeecChhhHHHhh-cCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC-eEEEEEcCcchhhHhhhcCCcCCCCCCeE
Q 020623 130 LSVPINQDTLNLLK-DDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKM 207 (323)
Q Consensus 130 lv~~~t~~~~~~~~-~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~-l~F~~vd~~~~~~~~~~~gl~~~~~~P~i 207 (323)
.+..++.+++.... ..++++++.|... .=..-..+...+.++++.+++ +.|+.+|.+..+.+++.||+ ...|.+
T Consensus 5 ~v~~l~~~~~~~~~~~~~~~vlv~f~a~-~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v---~~~Pt~ 80 (111)
T 3gnj_A 5 SLEKLDTNTFEQLIYDEGKACLVMFSRK-NCHVCQKVTPVLEELRLNYEESFGFYYVDVEEEKTLFQRFSL---KGVPQI 80 (111)
T ss_dssp CSEECCHHHHHHHHTTSCCCEEEEEECS-SCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTCHHHHHHTTC---CSSCEE
T ss_pred cceecCHHHHHHHHHhcCCEEEEEEeCC-CChhHHHHHHHHHHHHHHcCCceEEEEEECCcChhHHHhcCC---CcCCEE
Confidence 46778999998877 6678888877763 223346777899999999997 99999999988888999999 579999
Q ss_pred EEEeCCcceeeccCCCCCCCCCCHHHHHHHHHHHHc
Q 020623 208 VVWDGNENYLTVIGSESIDEEDQGSQISRFLEGYRE 243 (323)
Q Consensus 208 vI~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~~~~~ 243 (323)
+++...+..... .+..+.+.|.+|++.++.
T Consensus 81 ~~~~~g~~~~~~------~g~~~~~~l~~~l~~~l~ 110 (111)
T 3gnj_A 81 LYFKDGEYKGKM------AGDVEDDEVEQMIADVLE 110 (111)
T ss_dssp EEEETTEEEEEE------ESSCCHHHHHHHHHHHHH
T ss_pred EEEECCEEEEEE------eccCCHHHHHHHHHHHhc
Confidence 988543322222 234688999999998764
|
| >3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.12 E-value=1.9e-05 Score=63.33 Aligned_cols=117 Identities=11% Similarity=0.082 Sum_probs=87.2
Q ss_pred CCeeecChhhHH-HhhcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC-eEEEEEcCcchhhHhhhcCCcCCCCCCe
Q 020623 129 PLSVPINQDTLN-LLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPK 206 (323)
Q Consensus 129 Plv~~~t~~~~~-~~~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~-l~F~~vd~~~~~~~~~~~gl~~~~~~P~ 206 (323)
+.+..++.+++. .+...++++++.|... .-..-..+...|.++++.+++ +.|+.+|.+..+.+++.||+ ..+|.
T Consensus 6 ~~v~~l~~~~f~~~~~~~~~~vlv~F~a~-wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~v---~~~Pt 81 (140)
T 3hz4_A 6 SSIIEFEDMTWSQQVEDSKKPVVVMFYSP-ACPYCKAMEPYFEEYAKEYGSSAVFGRINIATNPWTAEKYGV---QGTPT 81 (140)
T ss_dssp TTEEEECHHHHHHHTTTCSSCEEEEEECT-TCHHHHHHHHHHHHHHHHHTTTSEEEEEETTTCHHHHHHHTC---CEESE
T ss_pred cceEEcchHhHHHHHHhCCCcEEEEEECC-CChhHHHHHHHHHHHHHHhCCceEEEEEECCcCHhHHHHCCC---CcCCE
Confidence 568899999998 5666678888877763 223346777899999999998 99999999988888999999 57899
Q ss_pred EEEEeCCcceeeccCCCCCCCCCCHHHHHHHHHHHHcCcccccccCCCC
Q 020623 207 MVVWDGNENYLTVIGSESIDEEDQGSQISRFLEGYREGRTEQKKVAGPS 255 (323)
Q Consensus 207 ivI~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~~~~~Gkl~~~~kSeP~ 255 (323)
++++...+..... .+..+.+.|.+||+.++....+...++.|.
T Consensus 82 ~~~~~~G~~~~~~------~G~~~~~~l~~~l~~~l~~~~~~~~~~~~~ 124 (140)
T 3hz4_A 82 FKFFCHGRPVWEQ------VGQIYPSILKNAVRDMLQHGEECIRKSTPV 124 (140)
T ss_dssp EEEEETTEEEEEE------ESSCCHHHHHHHHHHHHHHHHHHHHTSBC-
T ss_pred EEEEeCCcEEEEE------cCCCCHHHHHHHHHHHhcccccCccccccc
Confidence 9988543322222 234678999999999997655555555553
|
| >2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A | Back alignment and structure |
|---|
Probab=98.10 E-value=5.2e-05 Score=56.36 Aligned_cols=103 Identities=10% Similarity=0.124 Sum_probs=76.3
Q ss_pred eeecChhhHHHhhcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCCeEEEEEcCcchhhHhhhcCCcCCCCCCeEEEE
Q 020623 131 SVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVW 210 (323)
Q Consensus 131 v~~~t~~~~~~~~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI~ 210 (323)
|.+++.+++......++++++.|... .-..-..+...+.++++.++++.|+.+|.+..+.+++.||+ ...|.++++
T Consensus 1 V~~l~~~~~~~~~~~~~~~~v~f~~~-~C~~C~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v---~~~Pt~~~~ 76 (104)
T 2e0q_A 1 VIHLDSKNFDSFLASHEIAVVDFWAE-WCAPCLILAPIIEELAEDYPQVGFGKLNSDENPDIAARYGV---MSLPTVIFF 76 (104)
T ss_dssp CEECCTTTHHHHHHHSSEEEEEEECT-TCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTC---CSSCEEEEE
T ss_pred CeecCHHHHHHHHhcCCcEEEEEECC-CChhHHHHhHHHHHHHHHcCCceEEEEECCCCHHHHHhCCc---cccCEEEEE
Confidence 45788899988776677777777653 22334667788999999998899999999887788899999 468999988
Q ss_pred eCCcceeeccCCCCCCCCCCHHHHHHHHHHHHc
Q 020623 211 DGNENYLTVIGSESIDEEDQGSQISRFLEGYRE 243 (323)
Q Consensus 211 ~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~~~~~ 243 (323)
...+..... .+..+.+.+.+|++.++.
T Consensus 77 ~~g~~~~~~------~g~~~~~~l~~~l~~~l~ 103 (104)
T 2e0q_A 77 KDGEPVDEI------IGAVPREEIEIRIKNLLG 103 (104)
T ss_dssp ETTEEEEEE------ESCCCHHHHHHHHHHHHT
T ss_pred ECCeEhhhc------cCCCCHHHHHHHHHHHhc
Confidence 433221111 234678999999998864
|
| >3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A | Back alignment and structure |
|---|
Probab=98.10 E-value=4.4e-05 Score=60.82 Aligned_cols=105 Identities=8% Similarity=0.076 Sum_probs=78.9
Q ss_pred CCeeecChhhHHHhhcC------------CCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC-eEEEEEcCcchhhHhhh
Q 020623 129 PLSVPINQDTLNLLKDD------------KRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADT 195 (323)
Q Consensus 129 Plv~~~t~~~~~~~~~~------------~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~-l~F~~vd~~~~~~~~~~ 195 (323)
+.+..++.+++...... ++++++.|... .=..-..+...|.++++.+++ +.|+.+|.+....+++.
T Consensus 22 ~~v~~l~~~~f~~~l~~~~~~~~~l~~~~~k~vlv~f~a~-wC~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 100 (141)
T 3hxs_A 22 SGTIHLTRAEFLKKIADYENHSKEWKYLGDKPAIVDFYAD-WCGPCKMVAPILEELSKEYAGKIYIYKVNVDKEPELARD 100 (141)
T ss_dssp -CCEECCHHHHHHHTCCCSSCCCCCCCCCSSCEEEEEECT-TCTTHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHH
T ss_pred CCcccccHHHHHHHhhccccchhHHHHhCCCEEEEEEECC-CCHHHHHHHHHHHHHHHHhcCceEEEEEECCCCHHHHHH
Confidence 45777888888765443 57888777753 112345677889999999997 99999999988888999
Q ss_pred cCCcCCCCCCeEEEEeCCcceeeccCCCCCCCCCCHHHHHHHHHHHHc
Q 020623 196 FEANKKSKLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEGYRE 243 (323)
Q Consensus 196 ~gl~~~~~~P~ivI~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~~~~~ 243 (323)
||+ ...|.+++++.+++.... .+..+.+.|.+||+.++.
T Consensus 101 ~~v---~~~Pt~~~~~~~g~~~~~------~G~~~~~~l~~~l~~~l~ 139 (141)
T 3hxs_A 101 FGI---QSIPTIWFVPMKGEPQVN------MGALSKEQLKGYIDKVLL 139 (141)
T ss_dssp TTC---CSSSEEEEECSSSCCEEE------ESCCCHHHHHHHHHHTTC
T ss_pred cCC---CCcCEEEEEeCCCCEEEE------eCCCCHHHHHHHHHHHHc
Confidence 999 579999999876643222 234688999999998765
|
| >2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=98.06 E-value=9.7e-05 Score=58.68 Aligned_cols=106 Identities=8% Similarity=0.097 Sum_probs=79.4
Q ss_pred CeeecChhhHHHhhc------------CCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC-eEEEEEcCcchhhHhhhc
Q 020623 130 LSVPINQDTLNLLKD------------DKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTF 196 (323)
Q Consensus 130 lv~~~t~~~~~~~~~------------~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~-l~F~~vd~~~~~~~~~~~ 196 (323)
.+..++.+++..... .++++++.|... .=..-..+...|.++++++++ +.|+.+|.+....+++.|
T Consensus 10 ~v~~l~~~~f~~~v~~~~~~~~~~~~~~~k~~lv~f~a~-wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~ 88 (136)
T 2l5l_A 10 KVIHLTKAEFLAKVYNFEKNPEEWKYEGDKPAIVDFYAD-WCGPCKMVAPILDELAKEYDGQIVIYKVDTEKEQELAGAF 88 (136)
T ss_dssp SEEEECHHHHHHHTBCTTTCSSSCCBCCSSCEEEEEECT-TSHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHT
T ss_pred ceEEecchHHHHHHHhhccCccceeecCCCEEEEEEECC-cCHHHHHHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHHc
Confidence 467788888876543 356777777653 223345677889999999987 999999998877888999
Q ss_pred CCcCCCCCCeEEEEeCCcceeeccCCCCCCCCCCHHHHHHHHHHHHcCc
Q 020623 197 EANKKSKLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEGYREGR 245 (323)
Q Consensus 197 gl~~~~~~P~ivI~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~~~~~Gk 245 (323)
|+ ...|.+++++.+++.... .+..+.+.|.+||+......
T Consensus 89 ~v---~~~Pt~~~~~~~G~~~~~------~G~~~~~~l~~~l~~~~~~~ 128 (136)
T 2l5l_A 89 GI---RSIPSILFIPMEGKPEMA------QGAMPKASFKKAIDEFLLKK 128 (136)
T ss_dssp TC---CSSCEEEEECSSSCCEEE------ESCCCHHHHHHHHHHHHTSC
T ss_pred CC---CCCCEEEEECCCCcEEEE------eCCCCHHHHHHHHHHHhhcc
Confidence 99 579999999876543222 23478899999999987654
|
| >3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=98.05 E-value=0.00011 Score=59.26 Aligned_cols=105 Identities=10% Similarity=0.174 Sum_probs=81.2
Q ss_pred CeeecChhhHHHhhcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC-eEEEEEcCcchhhHhhhcCCcCCCCCCeEE
Q 020623 130 LSVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMV 208 (323)
Q Consensus 130 lv~~~t~~~~~~~~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~-l~F~~vd~~~~~~~~~~~gl~~~~~~P~iv 208 (323)
.+..++.+++......++++++.|... .=..-..+...|.++++++.+ +.|+.+|.+..+.+++.||+ ...|.++
T Consensus 39 ~v~~l~~~~~~~~~~~~k~vlv~F~a~-wC~~C~~~~p~l~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v---~~~Pt~~ 114 (148)
T 3p2a_A 39 EVINATAETLDKLLQDDLPMVIDFWAP-WCGPCRSFAPIFAETAAERAGKVRFVKVNTEAEPALSTRFRI---RSIPTIM 114 (148)
T ss_dssp CCEECCTTTHHHHTTCSSCEEEEEECS-SCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTC---CSSSEEE
T ss_pred CceecCHHHHHHHHhcCCcEEEEEECC-CCHHHHHHHHHHHHHHHHcCCceEEEEEECcCCHHHHHHCCC---CccCEEE
Confidence 477888899988777778888878763 223346777899999999976 99999999988888999999 5789999
Q ss_pred EEeCCcceeeccCCCCCCCCCCHHHHHHHHHHHHcC
Q 020623 209 VWDGNENYLTVIGSESIDEEDQGSQISRFLEGYREG 244 (323)
Q Consensus 209 I~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~~~~~G 244 (323)
++...+..... .+..+.+.|.+||++.+..
T Consensus 115 ~~~~G~~~~~~------~G~~~~~~l~~~l~~~l~~ 144 (148)
T 3p2a_A 115 LYRNGKMIDML------NGAVPKAPFDNWLDEQLSR 144 (148)
T ss_dssp EEETTEEEEEE------SSCCCHHHHHHHHHHHHHS
T ss_pred EEECCeEEEEE------eCCCCHHHHHHHHHHHhcc
Confidence 88643322222 2357889999999998875
|
| >3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A | Back alignment and structure |
|---|
Probab=98.02 E-value=7.4e-05 Score=55.98 Aligned_cols=101 Identities=9% Similarity=0.122 Sum_probs=76.6
Q ss_pred CeeecChhhHHHhhcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC-eEEEEEcCcchhhHhhhcCCcCCCCCCeEE
Q 020623 130 LSVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMV 208 (323)
Q Consensus 130 lv~~~t~~~~~~~~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~-l~F~~vd~~~~~~~~~~~gl~~~~~~P~iv 208 (323)
.+.+++.+++.... .++++++.|.... =..-..+...+.++++++++ +.|+.+|.+..+.+++.||+ ...|.++
T Consensus 4 ~v~~l~~~~~~~~~-~~~~~lv~f~~~~-C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v---~~~Pt~~ 78 (106)
T 3die_A 4 AIVKVTDADFDSKV-ESGVQLVDFWATA-CGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEV---MSIPTLI 78 (106)
T ss_dssp CCEECCTTTHHHHS-CSSEEEEEEECSB-CHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTC---CSBSEEE
T ss_pred ceEECCHHHHHHHh-cCCcEEEEEECCC-CHHHHHHhHHHHHHHHHhcCCcEEEEEECCcCHHHHHhCCC---cccCEEE
Confidence 46788999998877 6678877777532 23446777899999999998 99999999988888999999 5799999
Q ss_pred EEeCCcceeeccCCCCCCCCCCHHHHHHHHHHH
Q 020623 209 VWDGNENYLTVIGSESIDEEDQGSQISRFLEGY 241 (323)
Q Consensus 209 I~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~~~ 241 (323)
+++..+..... .+..+.+.|.+|++++
T Consensus 79 ~~~~G~~~~~~------~g~~~~~~l~~~l~~~ 105 (106)
T 3die_A 79 VFKDGQPVDKV------VGFQPKENLAEVLDKH 105 (106)
T ss_dssp EEETTEEEEEE------ESCCCHHHHHHHHHTT
T ss_pred EEeCCeEEEEE------eCCCCHHHHHHHHHHh
Confidence 88743322222 2346789999998764
|
| >2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A | Back alignment and structure |
|---|
Probab=98.02 E-value=4.9e-05 Score=57.13 Aligned_cols=102 Identities=6% Similarity=0.118 Sum_probs=76.0
Q ss_pred eeecChhhHHHhhcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC-eEEEEEcCcchhhHhhhcCCcCCCCCCeEEE
Q 020623 131 SVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVV 209 (323)
Q Consensus 131 v~~~t~~~~~~~~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~-l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI 209 (323)
+.+++.+++......++++++.|... .-..-..+...|.++++++++ +.|+.+|.+....+++.||+ ...|.+++
T Consensus 3 v~~l~~~~~~~~~~~~~~~lv~f~~~-~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v---~~~Pt~~~ 78 (109)
T 2yzu_A 3 PIEVTDQNFDETLGQHPLVLVDFWAE-WCAPCRMIAPILEEIAKEYEGKLLVAKLDVDENPKTAMRYRV---MSIPTVIL 78 (109)
T ss_dssp CEECCTTTHHHHHHHCSEEEEEEECT-TCHHHHHHHHHHHHHHHHTBTTBEEEEEETTTCHHHHHHTTC---CSSSEEEE
T ss_pred ceEccHhHHHHHhcCCCeEEEEEECC-CCHHHHHhhHHHHHHHHHhhCceEEEEEECCCCHhHHHhCCC---CcCCEEEE
Confidence 56788999987777677887777653 223345677889999999986 99999999887888899999 57899998
Q ss_pred EeCCc-ceeeccCCCCCCCCCCHHHHHHHHHHHHc
Q 020623 210 WDGNE-NYLTVIGSESIDEEDQGSQISRFLEGYRE 243 (323)
Q Consensus 210 ~~~~~-kY~~~~~~~~~~~~~t~~~I~~Fi~~~~~ 243 (323)
+...+ .+.+ .+..+.+.|.+|++..+.
T Consensus 79 ~~~g~~~~~~-------~g~~~~~~l~~~l~~~l~ 106 (109)
T 2yzu_A 79 FKDGQPVEVL-------VGAQPKRNYQAKIEKHLP 106 (109)
T ss_dssp EETTEEEEEE-------ESCCCHHHHHHHHHTTC-
T ss_pred EeCCcEeeeE-------eCCCCHHHHHHHHHHHhh
Confidence 84332 2222 234678999999987764
|
| >2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ... | Back alignment and structure |
|---|
Probab=98.02 E-value=0.00014 Score=54.83 Aligned_cols=102 Identities=14% Similarity=0.205 Sum_probs=75.4
Q ss_pred CeeecChhhHHH-hhcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC-eEEEEEcCcchhhHhhhcCCcCCCCCCeE
Q 020623 130 LSVPINQDTLNL-LKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKM 207 (323)
Q Consensus 130 lv~~~t~~~~~~-~~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~-l~F~~vd~~~~~~~~~~~gl~~~~~~P~i 207 (323)
.+.+++.+++.. +...++++++.|... .=..-..+...+.++++++++ +.|+.+|.+..+.+++.||+ ...|.+
T Consensus 3 ~v~~l~~~~f~~~~~~~~~~~~v~f~~~-~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v---~~~Pt~ 78 (108)
T 2trx_A 3 KIIHLTDDSFDTDVLKADGAILVDFWAE-WCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGI---RGIPTL 78 (108)
T ss_dssp TEEECCTTTHHHHTTTCSSEEEEEEECT-TCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCTTHHHHTTC---CSSSEE
T ss_pred cceecchhhHHHHHHhcCCeEEEEEECC-CCHhHHHHHHHHHHHHHHhCCCcEEEEEECCCCHHHHHHcCC---cccCEE
Confidence 467889999985 445667777777653 223345677889999999986 99999999887788899999 578999
Q ss_pred EEEeCCcce-eeccCCCCCCCCCCHHHHHHHHHHHH
Q 020623 208 VVWDGNENY-LTVIGSESIDEEDQGSQISRFLEGYR 242 (323)
Q Consensus 208 vI~~~~~kY-~~~~~~~~~~~~~t~~~I~~Fi~~~~ 242 (323)
+++. +++. ... .+..+.+.|.+|++..+
T Consensus 79 ~~~~-~G~~~~~~------~G~~~~~~l~~~l~~~l 107 (108)
T 2trx_A 79 LLFK-NGEVAATK------VGALSKGQLKEFLDANL 107 (108)
T ss_dssp EEEE-TTEEEEEE------ESCCCHHHHHHHHHHHH
T ss_pred EEEe-CCEEEEEE------ecCCCHHHHHHHHHHhh
Confidence 9884 4422 111 23467899999999875
|
| >1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=98.01 E-value=0.00017 Score=54.81 Aligned_cols=105 Identities=10% Similarity=0.122 Sum_probs=78.2
Q ss_pred CCeeecChhhHHHh-hcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC-eEEEEEcCcchhhHhhhcCCcCCCCCCe
Q 020623 129 PLSVPINQDTLNLL-KDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPK 206 (323)
Q Consensus 129 Plv~~~t~~~~~~~-~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~-l~F~~vd~~~~~~~~~~~gl~~~~~~P~ 206 (323)
.-+..++.+++... ...++++++.|.... =..-..+...|.++++.+++ +.|+.+|.+..+.+++.||+ ...|.
T Consensus 7 ~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~-C~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~~~~~~~~~~v---~~~Pt 82 (115)
T 1thx_A 7 KGVITITDAEFESEVLKAEQPVLVYFWASW-CGPCQLMSPLINLAANTYSDRLKVVKLEIDPNPTTVKKYKV---EGVPA 82 (115)
T ss_dssp CSEEECCGGGHHHHTTTCSSCEEEEEECTT-CTTHHHHHHHHHHHHHHTTTTCEEEEEESTTCHHHHHHTTC---CSSSE
T ss_pred CceEEeeccchhhHhhcCCceEEEEEECCC-CHHHHHhHHHHHHHHHHhCCcEEEEEEEcCCCHHHHHHcCC---CceeE
Confidence 34888999999865 456678877777632 12346677889999999987 99999999987888899999 57899
Q ss_pred EEEEeCCccee-eccCCCCCCCCCCHHHHHHHHHHHHcC
Q 020623 207 MVVWDGNENYL-TVIGSESIDEEDQGSQISRFLEGYREG 244 (323)
Q Consensus 207 ivI~~~~~kY~-~~~~~~~~~~~~t~~~I~~Fi~~~~~G 244 (323)
++++ .+++.. .. .+..+.+.+.+|++.++.+
T Consensus 83 ~~~~-~~G~~~~~~------~g~~~~~~l~~~l~~~l~~ 114 (115)
T 1thx_A 83 LRLV-KGEQILDST------EGVISKDKLLSFLDTHLNN 114 (115)
T ss_dssp EEEE-ETTEEEEEE------ESCCCHHHHHHHHHHHHC-
T ss_pred EEEE-cCCEEEEEe------cCCCCHHHHHHHHHHHhcC
Confidence 9988 444321 11 2346789999999998764
|
| >3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei} | Back alignment and structure |
|---|
Probab=98.00 E-value=5.6e-05 Score=57.83 Aligned_cols=95 Identities=16% Similarity=0.227 Sum_probs=68.3
Q ss_pred ceecCChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeec-ccchhhHhhcCCCCCCeEEE
Q 020623 29 VSILNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAK-DFSEDTMVLYDFDKVPALVA 99 (323)
Q Consensus 29 v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~-~~~~~~~~~~~~~~~p~ivv 99 (323)
|..|+|.+++++.+.+.+.. +++|-|... .+.+.++|..+. ++.|..++ +..++++.+|++.+.|++++
T Consensus 2 V~~i~~~~~f~~~l~~~~~k-~vvv~F~a~wC~~C~~~~p~~~~~~~~~~-~~~~~~vd~d~~~~l~~~~~V~~~PT~~~ 79 (105)
T 3zzx_A 2 VYQVKDQEDFTKQLNEAGNK-LVVIDFYATWCGPCKMIAPKLEELSQSMS-DVVFLKVDVDECEDIAQDNQIACMPTFLF 79 (105)
T ss_dssp CEECCSHHHHHHHHHHTTTS-EEEEEEECTTCHHHHHHHHHHHHHHHHCT-TEEEEEEETTTCHHHHHHTTCCBSSEEEE
T ss_pred eEEeCCHHHHHHHHHhcCCC-EEEEEEECCCCCCccCCCcchhhhhhccC-CeEEEEEecccCHHHHHHcCCCeecEEEE
Confidence 46788999999988764321 577777653 247888998876 45565543 34678999999999999999
Q ss_pred ecCCCCCCccccCCCCHHHHHHHHHhhc
Q 020623 100 LQPSYNEHNIFYGPFDEEFLEEFIKQNF 127 (323)
Q Consensus 100 ~k~~~~~~~~y~g~~~~~~L~~fI~~~~ 127 (323)
|+++ .....+.|. +.+.|.+||.+|.
T Consensus 80 ~~~G-~~v~~~~G~-~~~~l~~~i~k~K 105 (105)
T 3zzx_A 80 MKNG-QKLDSLSGA-NYDKLLELVEKNK 105 (105)
T ss_dssp EETT-EEEEEEESC-CHHHHHHHHHHHC
T ss_pred EECC-EEEEEEeCc-CHHHHHHHHHhcC
Confidence 9853 222235574 7899999999874
|
| >2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=98.00 E-value=9.7e-05 Score=60.42 Aligned_cols=105 Identities=11% Similarity=0.194 Sum_probs=78.1
Q ss_pred eeecChhhHHHhhcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC-eEEEEEcCcchhhHhhhcCCcCCCCCCeEEE
Q 020623 131 SVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVV 209 (323)
Q Consensus 131 v~~~t~~~~~~~~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~-l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI 209 (323)
+.+++..++......++++++.|... .=..-..+...|.++|+++++ +.|+.+|.+..+.+.+.||+ ...|.+++
T Consensus 49 ~~~l~~~~f~~~~~~~~~vlv~F~a~-wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~l~~~~~i---~~~Pt~~~ 124 (155)
T 2ppt_A 49 VAGIDPAILARAERDDLPLLVDFWAP-WCGPCRQMAPQFQAAAATLAGQVRLAKIDTQAHPAVAGRHRI---QGIPAFIL 124 (155)
T ss_dssp EEECCHHHHHHHTTCSSCEEEEEECT-TCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTSTHHHHHTTC---CSSSEEEE
T ss_pred CccCCHHHHHHHHhCCCcEEEEEECC-CCHHHHHHHHHHHHHHHHccCCEEEEEEeCCccHHHHHHcCC---CcCCEEEE
Confidence 67888888888766678888877753 222345677889999999986 99999999988888899999 57999998
Q ss_pred EeCCcceeeccCCCCCCCCCCHHHHHHHHHHHHcCc
Q 020623 210 WDGNENYLTVIGSESIDEEDQGSQISRFLEGYREGR 245 (323)
Q Consensus 210 ~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~~~~~Gk 245 (323)
+...+..... .+..+.+.|.+|++.++..+
T Consensus 125 ~~~G~~~~~~------~G~~~~~~l~~~l~~~l~~~ 154 (155)
T 2ppt_A 125 FHKGRELARA------AGARPASELVGFVRGKLGAR 154 (155)
T ss_dssp EETTEEEEEE------ESCCCHHHHHHHHHHHHC--
T ss_pred EeCCeEEEEe------cCCCCHHHHHHHHHHHhccC
Confidence 8533222112 23467899999999988653
|
| >1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A | Back alignment and structure |
|---|
Probab=97.99 E-value=7.1e-05 Score=56.14 Aligned_cols=101 Identities=8% Similarity=0.152 Sum_probs=74.9
Q ss_pred eeecChhhHHHhhcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC-eEEEEEcCcchhhHhhhcCCcCCCCCCeEEE
Q 020623 131 SVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVV 209 (323)
Q Consensus 131 v~~~t~~~~~~~~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~-l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI 209 (323)
+.+++.+++......++++++.|... .=..-..+...+.++++++++ +.|+.+|.+..+.+++.||+ ...|.+++
T Consensus 2 v~~l~~~~~~~~~~~~~~~~v~f~~~-~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~~~~~~~~~~v---~~~Pt~~~ 77 (105)
T 1nsw_A 2 TMTLTDANFQQAIQGDGPVLVDFWAA-WCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGI---MSIPTLIL 77 (105)
T ss_dssp CEEECTTTHHHHHSSSSCEEEEEECT-TCHHHHHHHHHHHHHHHHSTTTCEEEEEETTTCHHHHHHTTC---CSSSEEEE
T ss_pred ceeccHHhHHHHHhCCCcEEEEEECC-CCHHHHHHHHHHHHHHHHhcCCcEEEEEECcCCHHHHHHcCC---ccccEEEE
Confidence 56788899988777778888877763 223345677889999999987 99999999887788899999 57899998
Q ss_pred EeCCc-ceeeccCCCCCCCCCCHHHHHHHHHHHH
Q 020623 210 WDGNE-NYLTVIGSESIDEEDQGSQISRFLEGYR 242 (323)
Q Consensus 210 ~~~~~-kY~~~~~~~~~~~~~t~~~I~~Fi~~~~ 242 (323)
+...+ .+.. .+..+.+.+.+|++.++
T Consensus 78 ~~~G~~~~~~-------~G~~~~~~l~~~l~~~l 104 (105)
T 1nsw_A 78 FKGGRPVKQL-------IGYQPKEQLEAQLADVL 104 (105)
T ss_dssp EETTEEEEEE-------ESCCCHHHHHHHTTTTT
T ss_pred EeCCeEEEEE-------ecCCCHHHHHHHHHHHh
Confidence 84332 2222 12356788988887654
|
| >1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.96 E-value=0.00011 Score=58.61 Aligned_cols=107 Identities=14% Similarity=0.177 Sum_probs=65.9
Q ss_pred CCeeecChhhHHHhhcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC-eEEEEEcCcchhhHhhhcCCcCCCCCCeE
Q 020623 129 PLSVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKM 207 (323)
Q Consensus 129 Plv~~~t~~~~~~~~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~-l~F~~vd~~~~~~~~~~~gl~~~~~~P~i 207 (323)
+.+.+++.+++......+.++++.|... .-..-..+...|.++++++++ +.|+.+|.+....+++.||+ ..+|.+
T Consensus 33 ~~v~~l~~~~~~~~~~~~~~vvv~f~~~-~C~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~v---~~~Pt~ 108 (140)
T 1v98_A 33 PWVVEADEKGFAQEVAGAPLTLVDFFAP-WCGPCRLVSPILEELARDHAGRLKVVKVNVDEHPGLAARYGV---RSVPTL 108 (140)
T ss_dssp ----------------CCCEEEEEEECT-TCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCHHHHHHTTC---CSSSEE
T ss_pred CccccCCHHHHHHHHHcCCCEEEEEECC-CCHHHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHCCC---CccCEE
Confidence 5567788888887654433466666553 223346777889999999986 99999999988888899999 579999
Q ss_pred EEEeCCcceeeccCCCCCCCCCCHHHHHHHHHHHHcCc
Q 020623 208 VVWDGNENYLTVIGSESIDEEDQGSQISRFLEGYREGR 245 (323)
Q Consensus 208 vI~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~~~~~Gk 245 (323)
+++...+..... .+..+.+.|.+||+.+++|+
T Consensus 109 ~~~~~G~~~~~~------~G~~~~~~l~~~i~~~l~~~ 140 (140)
T 1v98_A 109 VLFRRGAPVATW------VGASPRRVLEERLRPYLEGR 140 (140)
T ss_dssp EEEETTEEEEEE------ESCCCHHHHHHHHHHHHTCC
T ss_pred EEEeCCcEEEEE------eCCCCHHHHHHHHHHHHccC
Confidence 988533221111 23467899999999998874
|
| >3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C* | Back alignment and structure |
|---|
Probab=97.96 E-value=0.00012 Score=56.45 Aligned_cols=103 Identities=9% Similarity=0.136 Sum_probs=75.7
Q ss_pred CCCeeecChhhHHHhhc--CCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCCeEEEEEcCcchhhHhhhcCCcCCCCCC
Q 020623 128 LPLSVPINQDTLNLLKD--DKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLP 205 (323)
Q Consensus 128 ~Plv~~~t~~~~~~~~~--~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~l~F~~vd~~~~~~~~~~~gl~~~~~~P 205 (323)
-+.....+.+++..+.. .++++++.|... .=..-..+...|.+++++++++.|+.+|.+..+.+++.||+ ..+|
T Consensus 11 ~~~~~~~t~~~f~~~l~~~~~k~vlv~F~a~-wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~l~~~~~v---~~~P 86 (116)
T 3qfa_C 11 GSVKQIESKTAFQEALDAAGDKLVVVDFSAT-WCGPSKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEV---KSMP 86 (116)
T ss_dssp -CCBCCCCHHHHHHHHHHHTTSCEEEEEECT-TCHHHHHHHHHHHHHHTTCTTSEEEEEETTTTHHHHHHTTC---CSSS
T ss_pred CcccCCCCHHHHHHHHHhcCCCEEEEEEECC-CCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHcCC---cccc
Confidence 34566677788887766 677888777763 12334677789999999998899999999988888999999 5799
Q ss_pred eEEEEeCCcceeeccCCCCCCCCCCHHHHHHHHHHH
Q 020623 206 KMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEGY 241 (323)
Q Consensus 206 ~ivI~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~~~ 241 (323)
.++++...+..... .+. +.+.|.+||+++
T Consensus 87 t~~~~~~G~~~~~~------~G~-~~~~l~~~l~~~ 115 (116)
T 3qfa_C 87 TFQFFKKGQKVGEF------SGA-NKEKLEATINEL 115 (116)
T ss_dssp EEEEESSSSEEEEE------ESC-CHHHHHHHHHHH
T ss_pred EEEEEeCCeEEEEE------cCC-CHHHHHHHHHHh
Confidence 99888433221111 223 789999999876
|
| >1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C | Back alignment and structure |
|---|
Probab=97.96 E-value=0.00015 Score=54.09 Aligned_cols=102 Identities=8% Similarity=0.151 Sum_probs=74.1
Q ss_pred eeecChhhHHHhh-cCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC-eEEEEEcCcchhhHhhhcCCcCCCCCCeEE
Q 020623 131 SVPINQDTLNLLK-DDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMV 208 (323)
Q Consensus 131 v~~~t~~~~~~~~-~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~-l~F~~vd~~~~~~~~~~~gl~~~~~~P~iv 208 (323)
|..++.+++.... ..++++++.|... .=..-..+...+.++++++++ +.|+.+|.+..+.+++.+|+ ...|.++
T Consensus 2 v~~~~~~~~~~~~~~~~~~~~v~f~~~-~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v---~~~Pt~~ 77 (105)
T 1fb6_A 2 VQDVNDSSWKEFVLESEVPVMVDFWAP-WCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNI---RSIPTVL 77 (105)
T ss_dssp CEECCTTTHHHHTTTCSSCEEEEEECT-TCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTC---CSSSEEE
T ss_pred ceechhhhHHHHHhcCCCcEEEEEECC-CChHHHHHHHHHHHHHHHhcCceEEEEEcCcchHHHHHhCCC---CcccEEE
Confidence 4678888888754 4567887777753 223346677889999999987 99999999887888899999 5789998
Q ss_pred EEeCCcceeeccCCCCCCCCCCHHHHHHHHHHHH
Q 020623 209 VWDGNENYLTVIGSESIDEEDQGSQISRFLEGYR 242 (323)
Q Consensus 209 I~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~~~~ 242 (323)
+....+..... .+..+.+.+.+|+++++
T Consensus 78 ~~~~g~~~~~~------~G~~~~~~l~~~l~~~l 105 (105)
T 1fb6_A 78 FFKNGERKESI------IGAVPKSTLTDSIEKYL 105 (105)
T ss_dssp EEETTEEEEEE------EECCCHHHHHHHHHHHC
T ss_pred EEeCCeEEEEE------ecCCCHHHHHHHHHhhC
Confidence 87533222111 23467889999998763
|
| >1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A | Back alignment and structure |
|---|
Probab=97.94 E-value=0.00021 Score=55.24 Aligned_cols=104 Identities=14% Similarity=0.139 Sum_probs=77.0
Q ss_pred CCCeeecChhhHHHh-hcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC-eEEEEEcCcchhhHhhhcCCcCCCCCC
Q 020623 128 LPLSVPINQDTLNLL-KDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLP 205 (323)
Q Consensus 128 ~Plv~~~t~~~~~~~-~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~-l~F~~vd~~~~~~~~~~~gl~~~~~~P 205 (323)
-+.+..++.+++... ...++++++.|... .=..-..+...|.++++++.+ +.|+.+|.+....+++.||+ ...|
T Consensus 12 ~~~~~~~~~~~f~~~v~~~~k~vlv~f~a~-~C~~C~~~~~~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v---~~~P 87 (119)
T 1w4v_A 12 STTFNIQDGPDFQDRVVNSETPVVVDFHAQ-WCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEV---SAVP 87 (119)
T ss_dssp CSEEECCSHHHHHHHTTTCSSCEEEEEECT-TCHHHHHHHHHHHHHHHHTTTSSEEEEEETTTTHHHHHHTTC---CSSS
T ss_pred ceEEEecChhhHHHHHHcCCCcEEEEEECC-CCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCCHHHHHHcCC---Cccc
Confidence 356888888898864 45667887777753 223345677888999999976 99999999887788899999 5789
Q ss_pred eEEEEeCCcce-eeccCCCCCCCCCCHHHHHHHHHHHH
Q 020623 206 KMVVWDGNENY-LTVIGSESIDEEDQGSQISRFLEGYR 242 (323)
Q Consensus 206 ~ivI~~~~~kY-~~~~~~~~~~~~~t~~~I~~Fi~~~~ 242 (323)
.++++. +++. ... .+..+.+.|.+|++.++
T Consensus 88 t~~~~~-~G~~~~~~------~G~~~~~~l~~~l~~~l 118 (119)
T 1w4v_A 88 TVLAMK-NGDVVDKF------VGIKDEDQLEAFLKKLI 118 (119)
T ss_dssp EEEEEE-TTEEEEEE------ESCCCHHHHHHHHHHHH
T ss_pred EEEEEe-CCcEEEEE------cCCCCHHHHHHHHHHHh
Confidence 999884 4422 111 23457899999999875
|
| >1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=97.94 E-value=0.00018 Score=54.03 Aligned_cols=100 Identities=11% Similarity=0.176 Sum_probs=74.4
Q ss_pred eeecChhhHHHhh-cCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC-eEEEEEcCcchhhHhhhcCCcCCCCCCeEE
Q 020623 131 SVPINQDTLNLLK-DDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMV 208 (323)
Q Consensus 131 v~~~t~~~~~~~~-~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~-l~F~~vd~~~~~~~~~~~gl~~~~~~P~iv 208 (323)
+..++.+++.... ..++++++.|... .=..-..+...+.++++++++ +.|+.+|.+..+.+++.||+ ...|.++
T Consensus 3 v~~l~~~~~~~~~~~~~~~~lv~f~~~-~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v---~~~Pt~~ 78 (107)
T 1dby_A 3 AGAVNDDTFKNVVLESSVPVLVDFWAP-WCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNVASEYGI---RSIPTIM 78 (107)
T ss_dssp CEEECHHHHHHHTTTCSSCEEEEEECT-TCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHHTC---CSSCEEE
T ss_pred cEeccHHHHHHHHhcCCCcEEEEEECC-CCHhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCC---CcCCEEE
Confidence 5678888988754 5567888777753 223345677889999999987 99999999887788899999 5789988
Q ss_pred EEeCCcc--eeeccCCCCCCCCCCHHHHHHHHHHHH
Q 020623 209 VWDGNEN--YLTVIGSESIDEEDQGSQISRFLEGYR 242 (323)
Q Consensus 209 I~~~~~k--Y~~~~~~~~~~~~~t~~~I~~Fi~~~~ 242 (323)
+.. +++ +.. .+..+.+.+.+|+++++
T Consensus 79 ~~~-~G~~~~~~-------~G~~~~~~l~~~l~~~l 106 (107)
T 1dby_A 79 VFK-GGKKCETI-------IGAVPKATIVQTVEKYL 106 (107)
T ss_dssp EES-SSSEEEEE-------ESCCCHHHHHHHHHHHC
T ss_pred EEe-CCEEEEEE-------eCCCCHHHHHHHHHHHh
Confidence 874 432 222 23467889999999875
|
| >2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica} | Back alignment and structure |
|---|
Probab=97.93 E-value=0.0002 Score=53.32 Aligned_cols=100 Identities=14% Similarity=0.204 Sum_probs=71.7
Q ss_pred eecCh-hhHHHhhc--CCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCCeEEEEEcCcchhhHhhhcCCcCCCCCCeEE
Q 020623 132 VPINQ-DTLNLLKD--DKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMV 208 (323)
Q Consensus 132 ~~~t~-~~~~~~~~--~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~l~F~~vd~~~~~~~~~~~gl~~~~~~P~iv 208 (323)
.+++. +++..... .++++++.|... .-..-..+...+.+++++++++.|+.+|.+..+.+++.+|+ ...|.++
T Consensus 2 ~~i~~~~~~~~~l~~~~~~~~~v~f~~~-~C~~C~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~v---~~~Pt~~ 77 (104)
T 2vim_A 2 RVLATAADLEKLINENKGRLIVVDFFAQ-WCGPCRNIAPKVEALAKEIPEVEFAKVDVDQNEEAAAKYSV---TAMPTFV 77 (104)
T ss_dssp EECCSHHHHHHHHHTTTTSCEEEEEECT-TCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTC---CSSSEEE
T ss_pred eecCCHHHHHHHHHhcCCCeEEEEEECC-CCHHHHHhhHHHHHHHHHCCCCEEEEEeccCCHHHHHHcCC---ccccEEE
Confidence 34555 77777665 567887777753 22334567788999999998899999999888888899999 5789998
Q ss_pred EEeCCcceeeccCCCCCCCCCCHHHHHHHHHHHH
Q 020623 209 VWDGNENYLTVIGSESIDEEDQGSQISRFLEGYR 242 (323)
Q Consensus 209 I~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~~~~ 242 (323)
+.+..+..... .+ .+.+.|.+|+++++
T Consensus 78 ~~~~g~~~~~~------~G-~~~~~l~~~l~~~l 104 (104)
T 2vim_A 78 FIKDGKEVDRF------SG-ANETKLRETITRHK 104 (104)
T ss_dssp EEETTEEEEEE------ES-SCHHHHHHHHHHHC
T ss_pred EEeCCcEEEEE------eC-CCHHHHHHHHHhhC
Confidence 88643322111 12 57789999998763
|
| >2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=97.93 E-value=0.0001 Score=57.70 Aligned_cols=104 Identities=13% Similarity=0.147 Sum_probs=77.2
Q ss_pred CeeecChhhHHH-hhcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC-eEEEEEcCcchhhHhhhcCCcCCCCCCeE
Q 020623 130 LSVPINQDTLNL-LKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKM 207 (323)
Q Consensus 130 lv~~~t~~~~~~-~~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~-l~F~~vd~~~~~~~~~~~gl~~~~~~P~i 207 (323)
.+..++.+++.. +...++++++.|.... =..-..+...+.++++++++ +.|+.+|.+....+++.|++ ..+|.+
T Consensus 18 ~v~~l~~~~f~~~~~~~~~~~lv~f~a~w-C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v---~~~Pt~ 93 (130)
T 2dml_A 18 DVIELTPSNFNREVIQSDGLWLVEFYAPW-CGHCQRLTPEWKKAATALKDVVKVGAVNADKHQSLGGQYGV---QGFPTI 93 (130)
T ss_dssp SSEECCTTTHHHHTTTCSSCEEEEEECTT-CSTTGGGHHHHHHHHHHTTTTSEEEEEETTTCHHHHHHHTC---CSSSEE
T ss_pred CcEECCHHHHHHHHhcCCCeEEEEEECCC-CHHHHhhCHHHHHHHHHhcCceEEEEEeCCCCHHHHHHcCC---CccCEE
Confidence 577889899987 4456678877777531 11224456678899999988 99999999988888899999 579999
Q ss_pred EEEeCCcc-eeeccCCCCCCCCCCHHHHHHHHHHHHc
Q 020623 208 VVWDGNEN-YLTVIGSESIDEEDQGSQISRFLEGYRE 243 (323)
Q Consensus 208 vI~~~~~k-Y~~~~~~~~~~~~~t~~~I~~Fi~~~~~ 243 (323)
++++.+++ .... .+..+.+.|.+|+.+.+.
T Consensus 94 ~~~~~~~~~~~~~------~G~~~~~~l~~~l~~~l~ 124 (130)
T 2dml_A 94 KIFGANKNKPEDY------QGGRTGEAIVDAALSALR 124 (130)
T ss_dssp EEESSCTTSCEEC------CSCCSHHHHHHHHHHHHH
T ss_pred EEEeCCCCeEEEe------ecCCCHHHHHHHHHHHHh
Confidence 99987653 2222 235688999999988764
|
| >3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.91 E-value=8.6e-05 Score=57.45 Aligned_cols=109 Identities=11% Similarity=0.121 Sum_probs=79.0
Q ss_pred CeeecChhhHH-HhhcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC-eEEEEEcCcchhhHhhhcCCcCCCCCCeE
Q 020623 130 LSVPINQDTLN-LLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKM 207 (323)
Q Consensus 130 lv~~~t~~~~~-~~~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~-l~F~~vd~~~~~~~~~~~gl~~~~~~P~i 207 (323)
.+..++.+++. .+...++++++.|... .=..-..+...+.++++.+++ +.|+.+|.+..+.++..||+ ...|.+
T Consensus 4 ~v~~l~~~~f~~~~~~~~~~~lv~f~a~-~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v---~~~Pt~ 79 (122)
T 3aps_A 4 ASIDLTPQTFNEKVLQGKTHWVVDFYAP-WCGPCQNFAPEFELLARMIKGKVRAGKVDCQAYPQTCQKAGI---KAYPSV 79 (122)
T ss_dssp CSEECCHHHHHHHTTTCSSCEEEEEECT-TCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTCHHHHHHTTC---CSSSEE
T ss_pred chhcCCHHHHHHHHhcCCCeEEEEEECC-CCHHHHHHHHHHHHHHHHhcCCeEEEEEeCcCCHHHHHHcCC---CccceE
Confidence 37788999995 4666677888777763 223346677889999999986 99999999988888899999 579999
Q ss_pred EEEeCCcceeeccCCCCCCCCCCHHHHHHHHHHHHcC
Q 020623 208 VVWDGNENYLTVIGSESIDEEDQGSQISRFLEGYREG 244 (323)
Q Consensus 208 vI~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~~~~~G 244 (323)
++++.+++-....|.. -+..+.+.|.+|++..++.
T Consensus 80 ~~~~~~~~~~~~~g~~--~~~~~~~~l~~~l~~~l~~ 114 (122)
T 3aps_A 80 KLYQYERAKKSIWEEQ--INSRDAKTIAALIYGKLET 114 (122)
T ss_dssp EEEEEEGGGTEEEEEE--ECCSCHHHHHHHHHHHHHC
T ss_pred EEEeCCCccceeeccc--cCcCCHHHHHHHHHHHHHh
Confidence 9987644211111100 0125889999999998863
|
| >2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti} | Back alignment and structure |
|---|
Probab=97.91 E-value=0.00015 Score=54.29 Aligned_cols=101 Identities=7% Similarity=0.109 Sum_probs=74.3
Q ss_pred CeeecChhhHHHhh-cCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC-eEEEEEcCcchhhHhhhcCCcCCCCCCeE
Q 020623 130 LSVPINQDTLNLLK-DDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKM 207 (323)
Q Consensus 130 lv~~~t~~~~~~~~-~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~-l~F~~vd~~~~~~~~~~~gl~~~~~~P~i 207 (323)
.+..++.+++.... ..++++++.|... .-..-..+...+.++++++++ +.|+.+|.+..+.+++.||+ ...|.+
T Consensus 3 ~v~~l~~~~~~~~~~~~~~~~lv~f~~~-~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v---~~~Pt~ 78 (107)
T 2i4a_A 3 HTLAVSDSSFDQDVLKASGLVLVDFWAE-WCGPCKMIGPALGEIGKEFAGKVTVAKVNIDDNPETPNAYQV---RSIPTL 78 (107)
T ss_dssp CEEECCTTTHHHHTTTCSSEEEEEEECT-TCHHHHHHHHHHHHHHHHHTTSEEEEEEETTTCCHHHHHTTC---CSSSEE
T ss_pred ceeecchhhhhHHHHhCCCEEEEEEECC-CChhHHHHhHHHHHHHHHhCCcEEEEEEECCCCHHHHHhcCC---CccCEE
Confidence 46788999998654 5667887777753 223346677888999999986 99999999887788899999 579999
Q ss_pred EEEeCCcc-eeeccCCCCCCCCCCHHHHHHHHHHH
Q 020623 208 VVWDGNEN-YLTVIGSESIDEEDQGSQISRFLEGY 241 (323)
Q Consensus 208 vI~~~~~k-Y~~~~~~~~~~~~~t~~~I~~Fi~~~ 241 (323)
+++ .+++ .... .+..+.+.|.+|++.+
T Consensus 79 ~~~-~~G~~~~~~------~G~~~~~~l~~~l~~~ 106 (107)
T 2i4a_A 79 MLV-RDGKVIDKK------VGALPKSQLKAWVESA 106 (107)
T ss_dssp EEE-ETTEEEEEE------ESCCCHHHHHHHHHHT
T ss_pred EEE-eCCEEEEEe------cCCCCHHHHHHHHHhc
Confidence 988 4442 2212 2346788999999864
|
| >1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.91 E-value=8.8e-05 Score=58.16 Aligned_cols=109 Identities=13% Similarity=0.109 Sum_probs=79.0
Q ss_pred CCeeecChhhHHHhh-cCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCC----C-eEEEEEcCcchhhHhhhcCCcCCC
Q 020623 129 PLSVPINQDTLNLLK-DDKRKIVLAIVEDETEEKSQKLVTTLKAAASANR----E-LVFCYVGIKQFADFADTFEANKKS 202 (323)
Q Consensus 129 Plv~~~t~~~~~~~~-~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~----~-l~F~~vd~~~~~~~~~~~gl~~~~ 202 (323)
..+..++.+++.... ..++++++.|... .=..-..+...+.+++++++ + +.|+.+|.+....+++.|++ .
T Consensus 7 ~~v~~l~~~~~~~~~~~~~~~~lv~f~a~-wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v---~ 82 (133)
T 1x5d_A 7 GDVIELTDDSFDKNVLDSEDVWMVEFYAP-WCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATVNQVLASRYGI---R 82 (133)
T ss_dssp CSCEECCTTHHHHHTTTSSSEEEEEEECT-TCHHHHTHHHHHHHHHHHHHHHTTTSEEEEEEETTTCCHHHHHHTC---C
T ss_pred CcCEEcCHhhHHHHHhcCCCeEEEEEECC-CCHHHHhhcHHHHHHHHHHHhhcCCcEEEEEEECCCCHHHHHhCCC---C
Confidence 357889999998754 5567777777653 11233456677788888775 5 99999999887788889999 5
Q ss_pred CCCeEEEEeCCcceeeccCCCCCCCCCCHHHHHHHHHHHHcCccc
Q 020623 203 KLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEGYREGRTE 247 (323)
Q Consensus 203 ~~P~ivI~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~~~~~Gkl~ 247 (323)
..|.+++++..+..... .+..+.+.|.+|+++.+.....
T Consensus 83 ~~Pt~~~~~~g~~~~~~------~G~~~~~~l~~~l~~~~~~~~~ 121 (133)
T 1x5d_A 83 GFPTIKIFQKGESPVDY------DGGRTRSDIVSRALDLFSDNAP 121 (133)
T ss_dssp SSSEEEEEETTEEEEEE------CSCCSHHHHHHHHHHHHHHHSC
T ss_pred eeCeEEEEeCCCceEEe------cCCCCHHHHHHHHHHHhhccCC
Confidence 79999999874322222 2346889999999999876543
|
| >2h8l_A Protein disulfide-isomerase A3; thioredoxin-like fold; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.90 E-value=6e-05 Score=66.73 Aligned_cols=118 Identities=14% Similarity=0.182 Sum_probs=83.6
Q ss_pred ccccc-CCCCChHHHHHHHHHhcCCCceecCChHHHHHHHHhcCCcccEEEEec--CC---h-------hHHHHHHHhhc
Q 020623 4 IPTEY-YGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFG--LD---E-------SVMSNLALKYK 70 (323)
Q Consensus 4 ~~~eY-~G~R~a~~Iv~~l~k~~~p~v~~i~s~~~l~~fl~~~~~~~~~vVgf~--~~---~-------~~f~~~A~~~~ 70 (323)
.+..| .|.++.++|.+|++...-|.|.+++. +.+..+ ...+ ++|.|. +. . ..+.++|++++
T Consensus 90 ~~~~y~~g~~~~~~l~~fi~~~~~Plv~e~t~-~n~~~~-~~~~----~~v~~~~~~~~~~~~~~~~~~~~~~~vA~~~~ 163 (252)
T 2h8l_A 90 KTVAYTEQKMTSGKIKKFIQENIFGICPHMTE-DNKDLI-QGKD----LLIAYYDVDYEKNAKGSNYWRNRVMMVAKKFL 163 (252)
T ss_dssp SEEECCCSSCCHHHHHHHHHHHSSCSSCEECT-TTHHHH-SSSS----EEEEEECCBTTTBHHHHHHHHHHHHHHHHHHH
T ss_pred cccccCCCCcCHHHHHHHHHhcccCCeeeccc-ccHhhh-cCCC----eEEEEeecchhhcchhHHHHHHHHHHHHHHcc
Confidence 45689 99999999999999999999999965 556665 3333 344442 21 1 24567899998
Q ss_pred Cc---eeEEeeccc-chhhHhhcCC--C--CCCeEEEecCCCCCCccccCCCCHHH--HHHHHHhhcC
Q 020623 71 KK---AWFAVAKDF-SEDTMVLYDF--D--KVPALVALQPSYNEHNIFYGPFDEEF--LEEFIKQNFL 128 (323)
Q Consensus 71 ~~---~~F~~~~~~-~~~~~~~~~~--~--~~p~ivv~k~~~~~~~~y~g~~~~~~--L~~fI~~~~~ 128 (323)
+. +.|+.++.. -..++..+|+ + ..|+++++.. .+..+.+.++++.+. |.+|+++-.-
T Consensus 164 ~k~~~~~F~~~d~~~~~~~~~~fgl~~~~~~~P~v~i~~~-~~~ky~~~~~~t~~~~~i~~F~~~~~~ 230 (252)
T 2h8l_A 164 DAGHKLNFAVASRKTFSHELSDFGLESTAGEIPVVAIRTA-KGEKFVMQEEFSRDGKALERFLQDYFD 230 (252)
T ss_dssp HTTCCCEEEEEETTTTHHHHGGGTCCCCSCSSCEEEEECT-TSCEEECCSCCCTTSHHHHHHHHHHHH
T ss_pred ccCceEEEEEEchHHHHHHHHHcCCCCccCCCCEEEEEeC-cCcEecCCcccCcchHHHHHHHHHHHC
Confidence 76 888887432 2346667788 2 4799999864 344555667888887 9999987653
|
| >2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A | Back alignment and structure |
|---|
Probab=97.89 E-value=9.4e-05 Score=56.97 Aligned_cols=109 Identities=7% Similarity=0.164 Sum_probs=76.7
Q ss_pred hhcCCCeeecChhhHHH-hhcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC-eEEEEEcCcchhhHhhhcCCcCCC
Q 020623 125 QNFLPLSVPINQDTLNL-LKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKS 202 (323)
Q Consensus 125 ~~~~Plv~~~t~~~~~~-~~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~-l~F~~vd~~~~~~~~~~~gl~~~~ 202 (323)
......+..++.+++.. +...++++++.|... .=..-..+...|.++++++++ +.|+.+|.+..+.+++.||+ .
T Consensus 8 ~~~~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~-~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i---~ 83 (121)
T 2i1u_A 8 DSEKSATIKVTDASFATDVLSSNKPVLVDFWAT-WCGPCKMVAPVLEEIATERATDLTVAKLDVDTNPETARNFQV---V 83 (121)
T ss_dssp ----CCSEECCTTTHHHHTTTCSSCEEEEEECT-TCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTC---C
T ss_pred hhhcccceecCHHHHHHHHHhCCCcEEEEEECC-CCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCCHHHHHhcCC---C
Confidence 33445678899999875 445677888777763 223346777889999999986 99999999887888899999 5
Q ss_pred CCCeEEEEeCCcceeeccCCCCCCCCCCHHHHHHHHHHHHc
Q 020623 203 KLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEGYRE 243 (323)
Q Consensus 203 ~~P~ivI~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~~~~~ 243 (323)
..|.+++....+..... .+..+.+.|.+|++.++.
T Consensus 84 ~~Pt~~~~~~g~~~~~~------~G~~~~~~l~~~l~~~l~ 118 (121)
T 2i1u_A 84 SIPTLILFKDGQPVKRI------VGAKGKAALLRELSDVVP 118 (121)
T ss_dssp SSSEEEEEETTEEEEEE------ESCCCHHHHHHHTCSCCC
T ss_pred cCCEEEEEECCEEEEEe------cCCCCHHHHHHHHHHHHh
Confidence 78999888633221111 234678889998876654
|
| >1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=97.89 E-value=0.00017 Score=56.65 Aligned_cols=103 Identities=9% Similarity=0.061 Sum_probs=76.3
Q ss_pred eeecCh-hhHHHhhcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCCeEEEEEcCcchhhHhhhcCCcCCCCCCeEEE
Q 020623 131 SVPINQ-DTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVV 209 (323)
Q Consensus 131 v~~~t~-~~~~~~~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI 209 (323)
+.+++. +++......++++++.|... .=..-..+...|.+++++++++.|+.+|.+....+++.||+ ..+|.+++
T Consensus 21 v~~l~~~~~f~~~~~~~k~vvv~F~a~-wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~l~~~~~v---~~~Pt~~i 96 (125)
T 1r26_A 21 VVDVYSVEQFRNIMSEDILTVAWFTAV-WCGPCKTIERPMEKIAYEFPTVKFAKVDADNNSEIVSKCRV---LQLPTFII 96 (125)
T ss_dssp CEEECCHHHHHHHHHSSSCEEEEEECT-TCHHHHHTHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTC---CSSSEEEE
T ss_pred eEECCCHHHHHHHHccCCEEEEEEECC-cCHhHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHcCC---CcccEEEE
Confidence 778887 88888777778888877763 22334567778999999997799999999988888899999 57999888
Q ss_pred EeCCcceeeccCCCCCCCCCCHHHHHHHHHHHHcC
Q 020623 210 WDGNENYLTVIGSESIDEEDQGSQISRFLEGYREG 244 (323)
Q Consensus 210 ~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~~~~~G 244 (323)
.......... .+ .+.+.|.+||+.++..
T Consensus 97 ~~~G~~~~~~------~G-~~~~~l~~~l~~~l~~ 124 (125)
T 1r26_A 97 ARSGKMLGHV------IG-ANPGMLRQKLRDIIKD 124 (125)
T ss_dssp EETTEEEEEE------ES-SCHHHHHHHHHHHHHC
T ss_pred EeCCeEEEEE------eC-CCHHHHHHHHHHHhcC
Confidence 7433221111 12 5678999999988753
|
| >1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=97.85 E-value=0.00034 Score=53.00 Aligned_cols=103 Identities=14% Similarity=0.222 Sum_probs=75.9
Q ss_pred CeeecChhhHHH-hhcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC-eEEEEEcCcchhhHhhhcCCcCCCCCCeE
Q 020623 130 LSVPINQDTLNL-LKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKM 207 (323)
Q Consensus 130 lv~~~t~~~~~~-~~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~-l~F~~vd~~~~~~~~~~~gl~~~~~~P~i 207 (323)
.+..++.+++.. +...++++++.|... .=..-..+...+.++++++++ +.|+.+|.+..+.+++.||+ ...|.+
T Consensus 6 ~v~~l~~~~~~~~~~~~~~~~vv~f~~~-~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v---~~~Pt~ 81 (112)
T 1t00_A 6 TLKHVTDDSFEQDVLKNDKPVLVDFWAA-WCGPCRQIAPSLEAIAAEYGDKIEIVKLNIDENPGTAAKYGV---MSIPTL 81 (112)
T ss_dssp CCEEECTTTHHHHTTTCSSCEEEEEECT-TCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTC---CSSSEE
T ss_pred eEEecchhhHHHHHhhCCCeEEEEEECC-CCHhHHhcCHHHHHHHHHhcCCeEEEEEEcCCCHHHHHhCCC---CcccEE
Confidence 467889888865 445667888777763 223345677889999999976 99999999887788899999 578999
Q ss_pred EEEeCCcc-eeeccCCCCCCCCCCHHHHHHHHHHHHc
Q 020623 208 VVWDGNEN-YLTVIGSESIDEEDQGSQISRFLEGYRE 243 (323)
Q Consensus 208 vI~~~~~k-Y~~~~~~~~~~~~~t~~~I~~Fi~~~~~ 243 (323)
++....+. +.. .+..+.+.+.+|++.+++
T Consensus 82 ~~~~~G~~~~~~-------~G~~~~~~l~~~l~~~l~ 111 (112)
T 1t00_A 82 NVYQGGEVAKTI-------VGAKPKAAIVRDLEDFIA 111 (112)
T ss_dssp EEEETTEEEEEE-------ESCCCHHHHHHHTHHHHC
T ss_pred EEEeCCEEEEEE-------eCCCCHHHHHHHHHHHhh
Confidence 88753322 222 234678899999998865
|
| >3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00029 Score=55.07 Aligned_cols=102 Identities=10% Similarity=0.140 Sum_probs=76.0
Q ss_pred CCeeecChhhHHHhhc-CCCcEEEEEEeCCChhHHHHHHHHHHHHHHhC-----CC-eEEEEEcCcchhhHhhhcCCcCC
Q 020623 129 PLSVPINQDTLNLLKD-DKRKIVLAIVEDETEEKSQKLVTTLKAAASAN-----RE-LVFCYVGIKQFADFADTFEANKK 201 (323)
Q Consensus 129 Plv~~~t~~~~~~~~~-~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~-----~~-l~F~~vd~~~~~~~~~~~gl~~~ 201 (323)
+.+..++.+++..... .++++++.|... -=..-+.+...+.++|+.+ .+ +.|+.+|.+..+.+++.|++
T Consensus 15 ~~v~~l~~~~f~~~~~~~~~~vlv~F~a~-wC~~C~~~~p~~~~la~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v--- 90 (127)
T 3h79_A 15 SRVVELTDETFDSIVMDPEKDVFVLYYVP-WSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARIDGEKYPDVIERMRV--- 90 (127)
T ss_dssp CCCEECCTTTHHHHHTCTTCEEEEEEECT-TCHHHHHHHHHHHHHHHHHHTSTTTTTEEEEEEETTTCHHHHHHTTC---
T ss_pred CceEECChhhHHHHHhCCCCCEEEEEECC-ccHHHHHHhHHHHHHHHHHHhcccCCCeEEEEEEccccHhHHHhcCC---
Confidence 4588899999998764 467777777653 1123456777888888753 24 99999999988889999999
Q ss_pred CCCCeEEEEeCCcc---eeeccCCCCCCCCCCHHHHHHHHHHH
Q 020623 202 SKLPKMVVWDGNEN---YLTVIGSESIDEEDQGSQISRFLEGY 241 (323)
Q Consensus 202 ~~~P~ivI~~~~~k---Y~~~~~~~~~~~~~t~~~I~~Fi~~~ 241 (323)
...|.++++...++ +.+ .+..+.+.|.+||++.
T Consensus 91 ~~~Pt~~~~~~g~~~~~~~~-------~G~~~~~~l~~~i~~~ 126 (127)
T 3h79_A 91 SGFPTMRYYTRIDKQEPFEY-------SGQRYLSLVDSFVFQN 126 (127)
T ss_dssp CSSSEEEEECSSCSSSCEEC-------CSCCCHHHHHHHHHHH
T ss_pred ccCCEEEEEeCCCCCCceEe-------cCCccHHHHHHHHHhc
Confidence 57999999886542 232 3457899999999864
|
| >2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00033 Score=54.00 Aligned_cols=106 Identities=8% Similarity=0.107 Sum_probs=76.5
Q ss_pred cCCCeeecChhhHHHhhc----CCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCCeEEEEEcCcchhhHhhhcCCcCCC
Q 020623 127 FLPLSVPINQDTLNLLKD----DKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKS 202 (323)
Q Consensus 127 ~~Plv~~~t~~~~~~~~~----~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~l~F~~vd~~~~~~~~~~~gl~~~~ 202 (323)
..|.+...+.+++..... .++++++.|... .=..-..+...|.+++++++++.|+.+|.+..+.+++.||+ .
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~-~C~~C~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~~~~~v---~ 86 (122)
T 2vlu_A 11 AAEVISVHSLEQWTMQIEEANTAKKLVVIDFTAS-WCGPCRIMAPVFADLAKKFPNAVFLKVDVDELKPIAEQFSV---E 86 (122)
T ss_dssp -CCCEEECSHHHHHHHHHHHHHTTCCEEEEEECT-TCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTC---C
T ss_pred CCcceeccCHHHHHHHHHHhhccCCEEEEEEECC-CCHHHHHHHHHHHHHHHHCCCcEEEEEECCCCHHHHHHcCC---C
Confidence 346677778888876543 467887777753 22334567778999999998899999999988888899999 5
Q ss_pred CCCeEEEEeCCcc-eeeccCCCCCCCCCCHHHHHHHHHHHHcC
Q 020623 203 KLPKMVVWDGNEN-YLTVIGSESIDEEDQGSQISRFLEGYREG 244 (323)
Q Consensus 203 ~~P~ivI~~~~~k-Y~~~~~~~~~~~~~t~~~I~~Fi~~~~~G 244 (323)
..|.+++....+. +.+ . +.. .+.|.+|++.++.+
T Consensus 87 ~~Pt~~~~~~G~~~~~~-~------G~~-~~~l~~~l~~~l~~ 121 (122)
T 2vlu_A 87 AMPTFLFMKEGDVKDRV-V------GAI-KEELTAKVGLHAAA 121 (122)
T ss_dssp SSSEEEEEETTEEEEEE-E------SSC-HHHHHHHHHHHHSC
T ss_pred cccEEEEEeCCEEEEEE-e------CcC-HHHHHHHHHHHhcc
Confidence 7899887743322 222 1 234 88999999998764
|
| >3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00023 Score=55.66 Aligned_cols=99 Identities=13% Similarity=0.121 Sum_probs=71.1
Q ss_pred CCCceecCChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhc-----CceeEEeecc-cchhhHhhcCC
Q 020623 26 APDVSILNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYK-----KKAWFAVAKD-FSEDTMVLYDF 91 (323)
Q Consensus 26 ~p~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~-----~~~~F~~~~~-~~~~~~~~~~~ 91 (323)
...|..| +.+++++++.+.+. +++|-|... ...|.++|..+. ..+.|+.++. ...+++.++++
T Consensus 14 ~~~v~~l-~~~~f~~~~~~~~~--~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v 90 (127)
T 3h79_A 14 PSRVVEL-TDETFDSIVMDPEK--DVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARIDGEKYPDVIERMRV 90 (127)
T ss_dssp CCCCEEC-CTTTHHHHHTCTTC--EEEEEEECTTCHHHHHHHHHHHHHHHHHHTSTTTTTEEEEEEETTTCHHHHHHTTC
T ss_pred CCceEEC-ChhhHHHHHhCCCC--CEEEEEECCccHHHHHHhHHHHHHHHHHHhcccCCCeEEEEEEccccHhHHHhcCC
Confidence 3457778 46889888864332 577777543 247888887653 3467766642 35678899999
Q ss_pred CCCCeEEEecCCCCC-CccccCCCCHHHHHHHHHhhc
Q 020623 92 DKVPALVALQPSYNE-HNIFYGPFDEEFLEEFIKQNF 127 (323)
Q Consensus 92 ~~~p~ivv~k~~~~~-~~~y~g~~~~~~L~~fI~~~~ 127 (323)
...|++++|+++... ...|.|..+.+.|.+||.+++
T Consensus 91 ~~~Pt~~~~~~g~~~~~~~~~G~~~~~~l~~~i~~~s 127 (127)
T 3h79_A 91 SGFPTMRYYTRIDKQEPFEYSGQRYLSLVDSFVFQNT 127 (127)
T ss_dssp CSSSEEEEECSSCSSSCEECCSCCCHHHHHHHHHHHC
T ss_pred ccCCEEEEEeCCCCCCceEecCCccHHHHHHHHHhcC
Confidence 999999999874332 256889999999999998764
|
| >3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ... | Back alignment and structure |
|---|
Probab=97.83 E-value=0.00028 Score=52.68 Aligned_cols=100 Identities=9% Similarity=0.156 Sum_probs=72.5
Q ss_pred eec-ChhhHHHhhc--CCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCCeEEEEEcCcchhhHhhhcCCcCCCCCCeEE
Q 020623 132 VPI-NQDTLNLLKD--DKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMV 208 (323)
Q Consensus 132 ~~~-t~~~~~~~~~--~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~l~F~~vd~~~~~~~~~~~gl~~~~~~P~iv 208 (323)
.++ +.+++..... .++++++.|... .-..-..+...+.+++++++++.|+.+|.+..+.+.+.||+ ...|.++
T Consensus 3 ~~i~~~~~~~~~l~~~~~~~~~v~f~~~-~C~~C~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v---~~~Pt~~ 78 (105)
T 3m9j_A 3 KQIESKTAFQEALDAAGDKLVVVDFSAT-WCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASESEV---KSMPTFQ 78 (105)
T ss_dssp EECCSHHHHHHHHHHTTTSCEEEEEECT-TCHHHHHHHHHHHHHHHHSTTSEEEEEETTTCHHHHHHTTC---CBSSEEE
T ss_pred EEcCCHHHHHHHHHhcCCCeEEEEEECC-CChhhHHHHHHHHHHHHHccCeEEEEEEhhhhHHHHHHcCC---CcCcEEE
Confidence 344 4566766655 567888777763 22344677789999999998899999999988888999999 5799999
Q ss_pred EEeCCcceeeccCCCCCCCCCCHHHHHHHHHHHH
Q 020623 209 VWDGNENYLTVIGSESIDEEDQGSQISRFLEGYR 242 (323)
Q Consensus 209 I~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~~~~ 242 (323)
++...+..... .+. +.+.|.+|+++++
T Consensus 79 ~~~~g~~~~~~------~g~-~~~~l~~~l~~~l 105 (105)
T 3m9j_A 79 FFKKGQKVGEF------SGA-NKEKLEATINELV 105 (105)
T ss_dssp EEETTEEEEEE------ESS-CHHHHHHHHHHHC
T ss_pred EEECCeEEEEE------eCC-CHHHHHHHHHHhC
Confidence 98544322222 123 7899999998763
|
| >3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B | Back alignment and structure |
|---|
Probab=97.83 E-value=0.00034 Score=53.18 Aligned_cols=99 Identities=10% Similarity=0.199 Sum_probs=73.4
Q ss_pred eecChhhHHHhhcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCCeEEEEEcCcchhhHhhhcCCcCCCCCCeEEEEe
Q 020623 132 VPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWD 211 (323)
Q Consensus 132 ~~~t~~~~~~~~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI~~ 211 (323)
...+.+++......++++++.|... .=..-..+...|.+++++++++.|+.+|.+..+.+++.||+ ..+|.+++++
T Consensus 10 ~~~~~~~f~~~~~~~k~vlv~f~a~-wC~~C~~~~p~l~~l~~~~~~~~~~~vd~~~~~~l~~~~~v---~~~Pt~~~~~ 85 (109)
T 3f3q_A 10 QFKTASEFDSAIAQDKLVVVDFYAT-WCGPCKMIAPMIEKFSEQYPQADFYKLDVDELGDVAQKNEV---SAMPTLLLFK 85 (109)
T ss_dssp ECCSHHHHHHHTTSSSCEEEEEECT-TCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTC---CSSSEEEEEE
T ss_pred CCCCHHHHHHHHhcCCEEEEEEECC-cCHhHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHcCC---CccCEEEEEE
Confidence 3455677887777778888777763 22334677789999999998899999999988888999999 5789999988
Q ss_pred CCcceeeccCCCCCCCCCCHHHHHHHHHHH
Q 020623 212 GNENYLTVIGSESIDEEDQGSQISRFLEGY 241 (323)
Q Consensus 212 ~~~kY~~~~~~~~~~~~~t~~~I~~Fi~~~ 241 (323)
..+......| .+.+.|.+||+.+
T Consensus 86 ~G~~~~~~~G-------~~~~~l~~~i~~~ 108 (109)
T 3f3q_A 86 NGKEVAKVVG-------ANPAAIKQAIAAN 108 (109)
T ss_dssp TTEEEEEEES-------SCHHHHHHHHHHH
T ss_pred CCEEEEEEeC-------CCHHHHHHHHHhh
Confidence 3322222222 3678999999875
|
| >2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A | Back alignment and structure |
|---|
Probab=97.83 E-value=0.00026 Score=56.12 Aligned_cols=98 Identities=14% Similarity=0.147 Sum_probs=71.2
Q ss_pred CCCceecCChHHHHHHHHhcCCcccEEEEecCC-------hhHHHHHHHhhcCceeEEeecc-cchhhHhhcCCCC--CC
Q 020623 26 APDVSILNSDAEVSDFVENAGTFFPLFIGFGLD-------ESVMSNLALKYKKKAWFAVAKD-FSEDTMVLYDFDK--VP 95 (323)
Q Consensus 26 ~p~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~-------~~~f~~~A~~~~~~~~F~~~~~-~~~~~~~~~~~~~--~p 95 (323)
.|.|..+ +.+.++++++... +++|-|... .+.|.++|++|++++.|+.++. -.++++..||+.. .|
T Consensus 5 ~plv~~~-t~~~f~~~~~~~~---pv~v~f~a~~~~c~~~~p~l~~~A~~~~gk~~f~~vd~d~~~~~a~~~gi~~~~iP 80 (133)
T 2djk_A 5 SPLIGEI-GPETYSDYMSAGI---PLAYIFAETAEERKELSDKLKPIAEAQRGVINFGTIDAKAFGAHAGNLNLKTDKFP 80 (133)
T ss_dssp CCCSEEC-CHHHHHHHHHTTS---CEEEEECSCSSSHHHHHHHHHHHHHSSTTTSEEEEECTTTTGGGTTTTTCCSSSSS
T ss_pred cCceecc-ChHHHHHHhcCCC---CEEEEEecChhhHHHHHHHHHHHHHHhCCeEEEEEEchHHhHHHHHHcCCCcccCC
Confidence 4567778 5688888775443 577777542 2478899999998898988742 2456788899987 89
Q ss_pred eEEEecCCCCCCcccc--CCCCHHHHHHHHHhhc
Q 020623 96 ALVALQPSYNEHNIFY--GPFDEEFLEEFIKQNF 127 (323)
Q Consensus 96 ~ivv~k~~~~~~~~y~--g~~~~~~L~~fI~~~~ 127 (323)
++++++...+....+. |.++.+.|.+||.+..
T Consensus 81 tl~i~~~~~g~~~~~~~~g~~~~~~l~~fi~~~l 114 (133)
T 2djk_A 81 AFAIQEVAKNQKFPFDQEKEITFEAIKAFVDDFV 114 (133)
T ss_dssp EEEEECTTTCCBCCCCSSSCCCHHHHHHHHHHHH
T ss_pred EEEEEecCcCcccCCCCccccCHHHHHHHHHHHH
Confidence 9999986223334443 8899999999998654
|
| >2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.83 E-value=0.00023 Score=56.01 Aligned_cols=102 Identities=14% Similarity=0.210 Sum_probs=74.7
Q ss_pred eeecChhhHHH-hhcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC-eEEEEEcCcchhhHhhhcCCcCCCCCCeEE
Q 020623 131 SVPINQDTLNL-LKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMV 208 (323)
Q Consensus 131 v~~~t~~~~~~-~~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~-l~F~~vd~~~~~~~~~~~gl~~~~~~P~iv 208 (323)
+..++.+++.. +...++++++.|... .=..-..+...+.++++++++ +.|+.+|.+..+.+++.||+ ...|.++
T Consensus 24 v~~l~~~~f~~~~~~~~k~vlv~F~a~-wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~v---~~~Pt~~ 99 (128)
T 2o8v_B 24 IIHLTDDSFDTDVLKADGAILVDFWAE-WCGPAKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGI---RGIPTLL 99 (128)
T ss_dssp SEEECTTTHHHHTTTCSSEEEEEEECS-SCHHHHHTHHHHHHHHHHTTTTEEEEEEETTTCCTTSGGGTC---CSSSEEE
T ss_pred cEecChhhHHHHHHhcCCEEEEEEECC-CCHHHHHHhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCC---CccCEEE
Confidence 67788889885 445667777777653 122345667788999999986 99999999877778888999 5789999
Q ss_pred EEeCCcce-eeccCCCCCCCCCCHHHHHHHHHHHHc
Q 020623 209 VWDGNENY-LTVIGSESIDEEDQGSQISRFLEGYRE 243 (323)
Q Consensus 209 I~~~~~kY-~~~~~~~~~~~~~t~~~I~~Fi~~~~~ 243 (323)
++ .+++. ... .+..+.+.|.+|++.+++
T Consensus 100 ~~-~~G~~~~~~------~G~~~~~~l~~~l~~~l~ 128 (128)
T 2o8v_B 100 LF-KNGEVAATK------VGALSKGQLKEFLDANLA 128 (128)
T ss_dssp EE-ETTEEEEEE------ESCCCHHHHHHHHHHHHC
T ss_pred EE-eCCEEEEEE------cCCCCHHHHHHHHHHhhC
Confidence 88 44432 111 234678999999998763
|
| >1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=97.83 E-value=0.00019 Score=54.73 Aligned_cols=103 Identities=10% Similarity=0.257 Sum_probs=75.1
Q ss_pred CCeeecChhhHHHhhcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCCeEEEEEcCcchhhHhhhcCCcCCCCCCeEE
Q 020623 129 PLSVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMV 208 (323)
Q Consensus 129 Plv~~~t~~~~~~~~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~l~F~~vd~~~~~~~~~~~gl~~~~~~P~iv 208 (323)
+....++.+++......++++++.|... .=..-..+...|.+++++++++.|+.+|.+..+.+++.||+ ...|.++
T Consensus 9 ~~~~~~~~~~f~~~~~~~k~vlv~f~a~-~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~~~~~~~~v---~~~Pt~~ 84 (112)
T 1syr_A 9 MVKIVTSQAEFDSIISQNELVIVDFFAE-WCGPCKRIAPFYEECSKTYTKMVFIKVDVDEVSEVTEKENI---TSMPTFK 84 (112)
T ss_dssp CCEEECSHHHHHHHHHHCSEEEEEEECT-TCHHHHHHHHHHHHHHHHCTTSEEEEEETTTTHHHHHHTTC---CSSSEEE
T ss_pred eEEEECCHHHHHHHHccCCeEEEEEECC-CCHHHHHHHHHHHHHHHHcCCCEEEEEECCCCHHHHHHcCC---CcccEEE
Confidence 3456777888888777677877777653 22334667788999999998899999999887788889999 5789988
Q ss_pred EEeCCcceeeccCCCCCCCCCCHHHHHHHHHHHH
Q 020623 209 VWDGNENYLTVIGSESIDEEDQGSQISRFLEGYR 242 (323)
Q Consensus 209 I~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~~~~ 242 (323)
+....+..... .+. +.+.|.+|++.++
T Consensus 85 ~~~~G~~~~~~------~G~-~~~~l~~~l~~~l 111 (112)
T 1syr_A 85 VYKNGSSVDTL------LGA-NDSALKQLIEKYA 111 (112)
T ss_dssp EEETTEEEEEE------ESC-CHHHHHHHHHTTC
T ss_pred EEECCcEEEEE------eCC-CHHHHHHHHHHhh
Confidence 87633221111 233 7889999998654
|
| >2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A | Back alignment and structure |
|---|
Probab=97.82 E-value=0.00053 Score=51.96 Aligned_cols=104 Identities=13% Similarity=0.215 Sum_probs=74.7
Q ss_pred CCCeeecChhhHHHhhc--CCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCCeEEEEEcCc-chhhHhhhcCCcCCCCC
Q 020623 128 LPLSVPINQDTLNLLKD--DKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIK-QFADFADTFEANKKSKL 204 (323)
Q Consensus 128 ~Plv~~~t~~~~~~~~~--~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~l~F~~vd~~-~~~~~~~~~gl~~~~~~ 204 (323)
...+..++.+++..... .++++++.|... .=..-..+...|.+++++++++.|+.+|.+ ....+++.||+ ...
T Consensus 4 ~~~v~~l~~~~~~~~~~~~~~~~vlv~f~a~-wC~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v---~~~ 79 (111)
T 2pu9_C 4 VGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQ-WCGPSKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGI---RVV 79 (111)
T ss_dssp TTSEEEECTTTHHHHHTTCTTSCEEEEEECT-TCHHHHHHHHHHHHHHHHCTTSEEEEEECSSTTHHHHHHHCC---SBS
T ss_pred cCccEEechHHHHHHHHhcCCCEEEEEEECC-cCHhHHHHCHHHHHHHHHCCCeEEEEEecCcchHHHHHHcCC---Cee
Confidence 34678899999988765 367887777763 223345677889999999989999999997 56778889999 578
Q ss_pred CeEEEEeCCccee-eccCCCCCCCCCCHHHHHHHHHHHHc
Q 020623 205 PKMVVWDGNENYL-TVIGSESIDEEDQGSQISRFLEGYRE 243 (323)
Q Consensus 205 P~ivI~~~~~kY~-~~~~~~~~~~~~t~~~I~~Fi~~~~~ 243 (323)
|.+++. .+++.. ...| .+.+.|.+||+.+++
T Consensus 80 Pt~~~~-~~G~~~~~~~G-------~~~~~l~~~l~~~~~ 111 (111)
T 2pu9_C 80 PTFKIL-KENSVVGEVTG-------AKYDKLLEAIQAARS 111 (111)
T ss_dssp SEEEEE-SSSSEEEEEES-------SCHHHHHHHHHHHHC
T ss_pred eEEEEE-eCCcEEEEEcC-------CCHHHHHHHHHHhhC
Confidence 996655 444321 1112 247899999998763
|
| >3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00032 Score=60.72 Aligned_cols=110 Identities=14% Similarity=0.200 Sum_probs=84.5
Q ss_pred CCeeecChhhHHH-hhcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC-eEEEEEcCcchhhHhhhcCCcCCCCCCe
Q 020623 129 PLSVPINQDTLNL-LKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPK 206 (323)
Q Consensus 129 Plv~~~t~~~~~~-~~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~-l~F~~vd~~~~~~~~~~~gl~~~~~~P~ 206 (323)
+.+..+|.+++.. +...++++++.|... .=..-..+...|.++++++++ +.|+.+|.+..+.+++.||+ ..+|.
T Consensus 12 ~~~~~lt~~~f~~~v~~~~k~vvv~F~a~-wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~l~~~~~v---~~~Pt 87 (222)
T 3dxb_A 12 DKIIHLTDDSFDTDVLKADGAILVDFWAE-WCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGI---RGIPT 87 (222)
T ss_dssp CCCEECCTTTHHHHHTTCSSCEEEEEECT-TCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCTTTGGGGTC---CSBSE
T ss_pred CCceeCCHHHHHHHHHhcCCEEEEEEECC-cCHHHHHHHHHHHHHHHHhcCCcEEEEEECCCCHHHHHHcCC---CcCCE
Confidence 4678899999987 566678888877763 123346777899999999998 99999999988888899999 57999
Q ss_pred EEEEeCCcceeeccCCCCCCCCCCHHHHHHHHHHHHcCcccc
Q 020623 207 MVVWDGNENYLTVIGSESIDEEDQGSQISRFLEGYREGRTEQ 248 (323)
Q Consensus 207 ivI~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~~~~~Gkl~~ 248 (323)
+++++..+..... .+..+.+.|.+|++..+++...+
T Consensus 88 ~~~~~~G~~~~~~------~G~~~~~~l~~~l~~~l~~~~~~ 123 (222)
T 3dxb_A 88 LLLFKNGEVAATK------VGALSKGQLKEFLDANLAGSAME 123 (222)
T ss_dssp EEEEETTEEEEEE------ESCCCHHHHHHHHHHHSCCSCCB
T ss_pred EEEEECCeEEEEe------ccccChHHHHHHHHhhccccccc
Confidence 9988743322121 23468899999999999887655
|
| >1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00035 Score=52.12 Aligned_cols=100 Identities=11% Similarity=0.166 Sum_probs=71.3
Q ss_pred eeecCh-hhHHHhhc--CCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC-eEEEEEcCcchhhHhhhcCCcCCCCCCe
Q 020623 131 SVPINQ-DTLNLLKD--DKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPK 206 (323)
Q Consensus 131 v~~~t~-~~~~~~~~--~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~-l~F~~vd~~~~~~~~~~~gl~~~~~~P~ 206 (323)
+.+++. +++..... .++++++.|... .-..-..+...++++++++++ +.|+.+|.+..+.+++.+|+ ...|.
T Consensus 2 v~~l~~~~~~~~~l~~~~~~~~vv~f~~~-~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v---~~~Pt 77 (106)
T 1xwb_A 2 VYQVKDKADLDGQLTKASGKLVVLDFFAT-WCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDIAMEYNI---SSMPT 77 (106)
T ss_dssp EEECCSHHHHHHHHHHHTTSEEEEEEECT-TCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCHHHHHHTTC---CSSSE
T ss_pred ceecCCHHHHHHHHHhcCCCEEEEEEECC-cCHHHHHhhHHHHHHHHHhCCCeEEEEEeccchHHHHHHcCC---CcccE
Confidence 456676 77777665 567777777763 223346677889999999965 99999999988888899999 57899
Q ss_pred EEEEeCCcceeeccCCCCCCCCCCHHHHHHHHHHH
Q 020623 207 MVVWDGNENYLTVIGSESIDEEDQGSQISRFLEGY 241 (323)
Q Consensus 207 ivI~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~~~ 241 (323)
+++....+..... .+ .+.+.|.+|++++
T Consensus 78 ~~~~~~G~~~~~~------~g-~~~~~l~~~i~~~ 105 (106)
T 1xwb_A 78 FVFLKNGVKVEEF------AG-ANAKRLEDVIKAN 105 (106)
T ss_dssp EEEEETTEEEEEE------ES-CCHHHHHHHHHHT
T ss_pred EEEEcCCcEEEEE------cC-CCHHHHHHHHHHh
Confidence 8887533222111 12 5678899998864
|
| >2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00019 Score=56.81 Aligned_cols=108 Identities=11% Similarity=0.149 Sum_probs=78.2
Q ss_pred CeeecChhhHHHhhcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC----eEEEEEcCcchhhHhhhcCCcCCCCCC
Q 020623 130 LSVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE----LVFCYVGIKQFADFADTFEANKKSKLP 205 (323)
Q Consensus 130 lv~~~t~~~~~~~~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~----l~F~~vd~~~~~~~~~~~gl~~~~~~P 205 (323)
.+..++.+++......++++++.|... .=..-..+...|.++++++++ +.|+.+|.+....+++.||+ ..+|
T Consensus 18 ~v~~l~~~~~~~~~~~~~~vlv~f~a~-wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v---~~~P 93 (140)
T 2dj1_A 18 GVWVLNDGNFDNFVADKDTVLLEFYAP-WCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSASMLASKFDV---SGYP 93 (140)
T ss_dssp TEEECCTTTHHHHHTTCSEEEEEECCT-TCHHHHTTHHHHHHHHHHHHSSSSCCEEEEECTTTCHHHHHHTTC---CSSS
T ss_pred CCEEcChHhHHHHHhcCCeEEEEEECC-CCHHHHHhhHHHHHHHHHHhccCCceEEEEEeCcccHHHHHHCCC---CccC
Confidence 577889999988877777777766652 112234555677777777542 99999999887888899999 5799
Q ss_pred eEEEEeCCcceeeccCCCCCCCCCCHHHHHHHHHHHHcCcccc
Q 020623 206 KMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEGYREGRTEQ 248 (323)
Q Consensus 206 ~ivI~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~~~~~Gkl~~ 248 (323)
.++++. +++.... .+..+.+.|.+|++..+.....+
T Consensus 94 t~~~~~-~G~~~~~------~g~~~~~~l~~~l~~~~~~~~~~ 129 (140)
T 2dj1_A 94 TIKILK-KGQAVDY------DGSRTQEEIVAKVREVSQPDWTP 129 (140)
T ss_dssp EEEEEE-TTEEEEC------CSCCCHHHHHHHHHHHHSSSCCC
T ss_pred eEEEEE-CCcEEEc------CCCCCHHHHHHHHHHhcCCCCCC
Confidence 999885 3432222 34578899999999998765544
|
| >1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00042 Score=52.42 Aligned_cols=101 Identities=9% Similarity=0.135 Sum_probs=72.5
Q ss_pred eeec-ChhhHHHhhcC----CCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC-eEEEEEcCcchhhHhhhcCCcCCCCC
Q 020623 131 SVPI-NQDTLNLLKDD----KRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKL 204 (323)
Q Consensus 131 v~~~-t~~~~~~~~~~----~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~-l~F~~vd~~~~~~~~~~~gl~~~~~~ 204 (323)
+..+ +.+++...... ++++++.|... .=..-..+...|.++++++++ +.|+.+|.+....+++.||+ ...
T Consensus 4 v~~i~~~~~~~~~l~~~~~~~~~~vv~f~~~-~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v---~~~ 79 (112)
T 1ep7_A 4 VIVIDSKAAWDAQLAKGKEEHKPIVVDFTAT-WCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEAAGI---TAM 79 (112)
T ss_dssp EEEECSHHHHHHHHHHHHHHTCCEEEEEECT-TCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTTHHHHHHHTC---CBS
T ss_pred EEEecCHHHHHHHHHhhcccCCeEEEEEECC-CCHHHHHHHHHHHHHHHHcCCCeEEEEEECCchHHHHHHcCC---Ccc
Confidence 4555 45777766543 67887777763 223345677889999999995 99999999888888899999 578
Q ss_pred CeEEEEeCCc-ceeeccCCCCCCCCCCHHHHHHHHHHHHc
Q 020623 205 PKMVVWDGNE-NYLTVIGSESIDEEDQGSQISRFLEGYRE 243 (323)
Q Consensus 205 P~ivI~~~~~-kY~~~~~~~~~~~~~t~~~I~~Fi~~~~~ 243 (323)
|.+++....+ .+.+ .+. +.+.|.+|++.+++
T Consensus 80 Pt~~~~~~G~~~~~~-------~G~-~~~~l~~~l~~~l~ 111 (112)
T 1ep7_A 80 PTFHVYKDGVKADDL-------VGA-SQDKLKALVAKHAA 111 (112)
T ss_dssp SEEEEEETTEEEEEE-------ESC-CHHHHHHHHHHHHC
T ss_pred cEEEEEECCeEEEEE-------cCC-CHHHHHHHHHHHhc
Confidence 9988775322 2222 123 78899999998875
|
| >2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens} | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00035 Score=54.38 Aligned_cols=106 Identities=15% Similarity=0.156 Sum_probs=74.4
Q ss_pred eeecChhhHH-----HhhcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC-eEEEEEc--CcchhhHhhhcCCcCCC
Q 020623 131 SVPINQDTLN-----LLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVG--IKQFADFADTFEANKKS 202 (323)
Q Consensus 131 v~~~t~~~~~-----~~~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~-l~F~~vd--~~~~~~~~~~~gl~~~~ 202 (323)
+..++..++. .....++++++.|... .=..-..+...|.++++++++ +.|+.+| .+....+++.||+ .
T Consensus 6 ~~~l~~~~~~~~~~~~~~~~~k~~lv~f~a~-wC~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~d~~~~~~~~~~v---~ 81 (126)
T 2l57_A 6 IKQINFQSINVVENLEEAKEGIPTIIMFKTD-TCPYCVEMQKELSYVSKEREGKFNIYYARLEEEKNIDLAYKYDA---N 81 (126)
T ss_dssp SSCTTTTCCSEESSTTTCCSSSCEEEEEECS-SCHHHHHHHHHHHHHHHHSSSSCEEEEEETTSSHHHHHHHHTTC---C
T ss_pred cCCCCccccchhHHHHHHhCCCcEEEEEECC-CCccHHHHHHHHHHHHHHhcCCeEEEEEeCCCCchHHHHHHcCC---c
Confidence 4455555555 3334567887777653 122345677788999999965 9999999 8777778889999 5
Q ss_pred CCCeEEEEeCCcceee-ccCCCCCCCCCCHHHHHHHHHHHHcCcc
Q 020623 203 KLPKMVVWDGNENYLT-VIGSESIDEEDQGSQISRFLEGYREGRT 246 (323)
Q Consensus 203 ~~P~ivI~~~~~kY~~-~~~~~~~~~~~t~~~I~~Fi~~~~~Gkl 246 (323)
..|.+++++.+++... . .+..+.+.|.+|++..+...-
T Consensus 82 ~~Pt~~~~~~~G~~~~~~------~G~~~~~~l~~~l~~~~~~~~ 120 (126)
T 2l57_A 82 IVPTTVFLDKEGNKFYVH------QGLMRKNNIETILNSLGVKEG 120 (126)
T ss_dssp SSSEEEEECTTCCEEEEE------ESCCCHHHHHHHHHHHCCCCC
T ss_pred ceeEEEEECCCCCEEEEe------cCCCCHHHHHHHHHHHhcccc
Confidence 7999999997654221 1 234678999999998865443
|
| >3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00059 Score=51.32 Aligned_cols=100 Identities=7% Similarity=0.127 Sum_probs=74.6
Q ss_pred CeeecChhhHHHhhcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCC----CeEEEEEcCcchhhHhhhcCCcCCCCCC
Q 020623 130 LSVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANR----ELVFCYVGIKQFADFADTFEANKKSKLP 205 (323)
Q Consensus 130 lv~~~t~~~~~~~~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~----~l~F~~vd~~~~~~~~~~~gl~~~~~~P 205 (323)
.+..+|.+++..... ++++++.|... .=..-..+...+.++++.+. ++.|+.+|.+....+++.||+ ...|
T Consensus 6 ~v~~l~~~~~~~~~~-~~~~lv~f~~~-~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v---~~~P 80 (111)
T 3uvt_A 6 TVLALTENNFDDTIA-EGITFIKFYAP-WCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNICSKYSV---RGYP 80 (111)
T ss_dssp CSEECCTTTHHHHHH-SSEEEEEEECS-SCHHHHHHHHHHHHHHTCCCCC-CCEEEEEEETTTCHHHHHHTTC---CSSS
T ss_pred cceEcChhhHHHHhc-CCcEEEEEECC-CChhHHHhhHHHHHHHHHhhccCCceEEEEEeccccHhHHHhcCC---Cccc
Confidence 577889999998776 56777767653 22334677788999999875 499999999988888999999 5799
Q ss_pred eEEEEeCCcceeeccCCCCCCCCCCHHHHHHHHHH
Q 020623 206 KMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEG 240 (323)
Q Consensus 206 ~ivI~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~~ 240 (323)
.++++...+..... .+..+.+.|.+|+++
T Consensus 81 t~~~~~~g~~~~~~------~g~~~~~~l~~~l~~ 109 (111)
T 3uvt_A 81 TLLLFRGGKKVSEH------SGGRDLDSLHRFVLS 109 (111)
T ss_dssp EEEEEETTEEEEEE------CSCCSHHHHHHHHHH
T ss_pred EEEEEeCCcEEEec------cCCcCHHHHHHHHHh
Confidence 99888544322222 234788999999976
|
| >4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00014 Score=54.88 Aligned_cols=98 Identities=7% Similarity=0.121 Sum_probs=61.5
Q ss_pred ChhhHHHhhcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCCeEEEEEcCcchhhHhhhcCCcCCCCCCeEEEEeCCc
Q 020623 135 NQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNE 214 (323)
Q Consensus 135 t~~~~~~~~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI~~~~~ 214 (323)
|.+++......++++++.|...- =..-..+...+.+++++++++.|+.+|.+..+.+++.||+ ...|.++++...+
T Consensus 7 ~~~~~~~~~~~~~~vlv~f~a~w-C~~C~~~~p~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v---~~~Pt~~~~~~G~ 82 (105)
T 4euy_A 7 TIEELATYIEEQQLVLLFIKTEN-CGVCDVMLRKVNYVLENYNYVEKIEILLQDMQEIAGRYAV---FTGPTVLLFYNGK 82 (105)
T ss_dssp ---CCSSSTTCSSEEEEEEEESS-CHHHHHHHHHHHHHHHTCTTEEEEEEEECCC------------CCCCEEEEEETTE
T ss_pred CHHHHHHHHhcCCCEEEEEeCCC-CcchHHHHHHHHHHHHHcCCceEEEEECCCCHHHHHhcCC---CCCCEEEEEeCCe
Confidence 34566666666778877777632 2334667789999999997799999999988888899999 5799999987433
Q ss_pred ceeeccCCCCCCCCCCHHHHHHHHHHHH
Q 020623 215 NYLTVIGSESIDEEDQGSQISRFLEGYR 242 (323)
Q Consensus 215 kY~~~~~~~~~~~~~t~~~I~~Fi~~~~ 242 (323)
..... .+..+.+.|.+|++.++
T Consensus 83 ~~~~~------~g~~~~~~l~~~l~~~~ 104 (105)
T 4euy_A 83 EILRE------SRFISLENLERTIQLFE 104 (105)
T ss_dssp EEEEE------ESSCCHHHHHHHHHTTC
T ss_pred EEEEE------eCCcCHHHHHHHHHHhh
Confidence 22111 23468899999998754
|
| >1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=97.71 E-value=0.0013 Score=49.44 Aligned_cols=97 Identities=11% Similarity=0.092 Sum_probs=69.7
Q ss_pred ChhhHHHhh--cCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCCeEEEEEcCcchhhHhhhcCCcCCCCCCeEEEEeC
Q 020623 135 NQDTLNLLK--DDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDG 212 (323)
Q Consensus 135 t~~~~~~~~--~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI~~~ 212 (323)
+.+++.... ..++++++.|... .=..-..+...+.+++++++++.|+.+|.+..+.+++.||+ ...|.++++..
T Consensus 8 ~~~~~~~~~~~~~~~~v~v~f~a~-wC~~C~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v---~~~Pt~~~~~~ 83 (107)
T 1gh2_A 8 SDPDFQPELSGAGSRLAVVKFTMR-GCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQCQGTAATNNI---SATPTFQFFRN 83 (107)
T ss_dssp SGGGHHHHHHHTTTSCEEEEEECS-SCHHHHHHHHHHHHHHHHCTTSEEEEEETTTSHHHHHHTTC---CSSSEEEEEET
T ss_pred CHHHHHHHHHhCCCCEEEEEEECC-CChhhHHHHHHHHHHHHHCCCcEEEEEECccCHHHHHhcCC---CcccEEEEEEC
Confidence 567887766 4567887777763 22334667788999999997799999999987788889999 57999988854
Q ss_pred CcceeeccCCCCCCCCCCHHHHHHHHHHHH
Q 020623 213 NENYLTVIGSESIDEEDQGSQISRFLEGYR 242 (323)
Q Consensus 213 ~~kY~~~~~~~~~~~~~t~~~I~~Fi~~~~ 242 (323)
.+......| .+.+.|.+|++.++
T Consensus 84 G~~~~~~~G-------~~~~~l~~~l~~~l 106 (107)
T 1gh2_A 84 KVRIDQYQG-------ADAVGLEEKIKQHL 106 (107)
T ss_dssp TEEEEEEES-------SCHHHHHHHHHHHH
T ss_pred CeEEEEEeC-------CCHHHHHHHHHHhc
Confidence 332222122 34556999998875
|
| >3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00062 Score=58.25 Aligned_cols=108 Identities=7% Similarity=0.072 Sum_probs=82.2
Q ss_pred CCeeecChhhHHHhhcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC-eEEEEEcCcchhhHhhhcCCcCCCCCCeE
Q 020623 129 PLSVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKM 207 (323)
Q Consensus 129 Plv~~~t~~~~~~~~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~-l~F~~vd~~~~~~~~~~~gl~~~~~~P~i 207 (323)
+.+..++.+++......++++++.|... .=..-..+...+.++++++++ +.|+.+|.+..+.++..||+ ..+|.+
T Consensus 97 ~~v~~l~~~~f~~~~~~~~~vlv~F~a~-wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~~~~~~l~~~~~v---~~~Pt~ 172 (210)
T 3apq_A 97 PEIITLERREFDAAVNSGELWFVNFYSP-GCSHCHDLAPTWREFAKEVDGLLRIGAVNCGDDRMLCRMKGV---NSYPSL 172 (210)
T ss_dssp TTSEECCHHHHHHHHHHSCCEEEEEECT-TCHHHHHHHHHHHHHHHHTBTTBEEEEEETTTCHHHHHHTTC---CSSSEE
T ss_pred CceEEecHHHHHHHHccCCcEEEEEeCC-CChhHHHHHHHHHHHHHHhcCceEEEEEECCccHHHHHHcCC---CcCCeE
Confidence 4577889999988766677888877763 223346677889999999987 99999999888888899999 579999
Q ss_pred EEEeCCcc-eeeccCCCCCCCCCCHHHHHHHHHHHHcCccc
Q 020623 208 VVWDGNEN-YLTVIGSESIDEEDQGSQISRFLEGYREGRTE 247 (323)
Q Consensus 208 vI~~~~~k-Y~~~~~~~~~~~~~t~~~I~~Fi~~~~~Gkl~ 247 (323)
+++ .+++ .... .+..+.+.|.+||+..+...+.
T Consensus 173 ~~~-~~G~~~~~~------~G~~~~~~l~~~i~~~l~~~~~ 206 (210)
T 3apq_A 173 FIF-RSGMAAVKY------NGDRSKESLVAFAMQHVRSTVT 206 (210)
T ss_dssp EEE-CTTSCCEEC------CSCCCHHHHHHHHHHHHHCCSS
T ss_pred EEE-ECCCceeEe------cCCCCHHHHHHHHHHhCcccce
Confidence 988 4432 2222 3457889999999998876543
|
| >2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00026 Score=54.00 Aligned_cols=101 Identities=8% Similarity=0.083 Sum_probs=73.3
Q ss_pred eeecChhhHHHhhcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC-eEEEEEcCcchhhHhhhcCCcCCCCCCeEEE
Q 020623 131 SVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVV 209 (323)
Q Consensus 131 v~~~t~~~~~~~~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~-l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI 209 (323)
+.+++.+++.... .++++++.|... .=..-..+...|.++++++++ +.|+.+|.+..+.+++.||+ ...|.+++
T Consensus 3 v~~l~~~~~~~~~-~~~~~lv~f~a~-wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v---~~~Pt~~~ 77 (112)
T 2voc_A 3 IVKATDQSFSAET-SEGVVLADFWAP-WCGPSKMIAPVLEELDQEMGDKLKIVKIDVDENQETAGKYGV---MSIPTLLV 77 (112)
T ss_dssp CEECCTTTHHHHH-SSSEEEEEEECT-TBGGGGGHHHHHHHHHHHHTTTCEEEEEETTTCCSHHHHTTC---CSBSEEEE
T ss_pred eEEecHHHHHHHh-CCCEEEEEEECC-CCHHHHHHHHHHHHHHHHhCCCcEEEEEECCCCHHHHHHcCC---CcccEEEE
Confidence 5678899998777 667777777653 112234566778889999886 99999999887788899999 57999998
Q ss_pred EeCCcce-eeccCCCCCCCCCCHHHHHHHHHHHHc
Q 020623 210 WDGNENY-LTVIGSESIDEEDQGSQISRFLEGYRE 243 (323)
Q Consensus 210 ~~~~~kY-~~~~~~~~~~~~~t~~~I~~Fi~~~~~ 243 (323)
+ .+++. ... .+..+.+.|.+|++..+.
T Consensus 78 ~-~~G~~~~~~------~G~~~~~~l~~~l~~~~~ 105 (112)
T 2voc_A 78 L-KDGEVVETS------VGFKPKEALQELVNKHLL 105 (112)
T ss_dssp E-ETTEEEEEE------ESCCCHHHHHHHHHTTSC
T ss_pred E-eCCEEEEEE------eCCCCHHHHHHHHHHHHH
Confidence 8 44432 111 234678899999886654
|
| >3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00072 Score=51.22 Aligned_cols=102 Identities=18% Similarity=0.311 Sum_probs=71.0
Q ss_pred eeecCh-hhHHHhhcC---CCcEEEEEEeCCChhHHHHHHHHHHHHHHh--CCCeEEEEEcCcchhhHhhhcCCcCCCCC
Q 020623 131 SVPINQ-DTLNLLKDD---KRKIVLAIVEDETEEKSQKLVTTLKAAASA--NRELVFCYVGIKQFADFADTFEANKKSKL 204 (323)
Q Consensus 131 v~~~t~-~~~~~~~~~---~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~--~~~l~F~~vd~~~~~~~~~~~gl~~~~~~ 204 (323)
|.+++. +++...... ++++++.|... .=..-..+...+.+++++ ++++.|+.+|.+..+.+++.||+ ...
T Consensus 2 v~~i~~~~~~~~~~~~~~~~~~~~v~f~a~-wC~~C~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v---~~~ 77 (112)
T 3d6i_A 2 VIEINDQEQFTYLTTTAAGDKLIVLYFHTS-WAEPCKALKQVFEAISNEPSNSNVSFLSIDADENSEISELFEI---SAV 77 (112)
T ss_dssp EEEECCHHHHHHHHTTTTTTCCEEEEEECC-C--CHHHHHHHHHHHHHCGGGTTSEEEEEETTTCHHHHHHTTC---CSS
T ss_pred ccccCCHHHHHHHHhcccCCCEEEEEEECC-CCHHHHHHHHHHHHHHHhcCCCCEEEEEEecccCHHHHHHcCC---Ccc
Confidence 456776 888877654 67887777653 112345677788999998 45699999999888888889999 579
Q ss_pred CeEEEEeCCcceeeccCCCCCCCCCCHHHHHHHHHHHHc
Q 020623 205 PKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEGYRE 243 (323)
Q Consensus 205 P~ivI~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~~~~~ 243 (323)
|.+++....+......| .+.+.|.+|++.++.
T Consensus 78 Pt~~~~~~G~~~~~~~G-------~~~~~l~~~l~~~~~ 109 (112)
T 3d6i_A 78 PYFIIIHKGTILKELSG-------ADPKEYVSLLEDCKN 109 (112)
T ss_dssp SEEEEEETTEEEEEECS-------CCHHHHHHHHHHHHH
T ss_pred cEEEEEECCEEEEEecC-------CCHHHHHHHHHHHHh
Confidence 99988853322111122 245579999998764
|
| >3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A* | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00026 Score=59.50 Aligned_cols=119 Identities=10% Similarity=0.040 Sum_probs=81.3
Q ss_pred HHHHhcCCCceecCChHHHHHHHHhc-CCcccEEEEecC--------C-------hhHHHHHHHhhc-----CceeEEee
Q 020623 20 YLKKFVAPDVSILNSDAEVSDFVENA-GTFFPLFIGFGL--------D-------ESVMSNLALKYK-----KKAWFAVA 78 (323)
Q Consensus 20 ~l~k~~~p~v~~i~s~~~l~~fl~~~-~~~~~~vVgf~~--------~-------~~~f~~~A~~~~-----~~~~F~~~ 78 (323)
.+.......|..|+ .+.+++++... +. +++|-|.. . .+.|+++|.++. +++.|+.+
T Consensus 11 l~~l~~~~~vi~lt-~~nF~~~v~~~~~~--~vvV~F~A~~~~~~~~wCgpCk~l~P~~e~lA~~~~~~~~~~~v~f~kv 87 (178)
T 3ga4_A 11 ILQLKDDTGVITVT-ADNYPLLSRGVPGY--FNILYITMRGTNSNGMSCQLCHDFEKTYHAVADVIRSQAPQSLNLFFTV 87 (178)
T ss_dssp HHTTCCTTSEEECC-TTTHHHHTTCCTTC--EEEEEEECCSBCTTSCBCHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEE
T ss_pred HHHhhccCCCEECC-HHHHHHHHcccCCC--cEEEEEeCCCCCCCCCCChhHHHHHHHHHHHHHHhhhccCCCCEEEEEE
Confidence 33334455688885 68999888643 43 56777755 2 248899999987 67888876
Q ss_pred c-ccchhhHhhcCCCCCCeEEEecCCCCCC-----------ccc---cC-CCCHHHHHHHHHhhcCCCeeecChhhHHH
Q 020623 79 K-DFSEDTMVLYDFDKVPALVALQPSYNEH-----------NIF---YG-PFDEEFLEEFIKQNFLPLSVPINQDTLNL 141 (323)
Q Consensus 79 ~-~~~~~~~~~~~~~~~p~ivv~k~~~~~~-----------~~y---~g-~~~~~~L~~fI~~~~~Plv~~~t~~~~~~ 141 (323)
+ +..++++.+|++.+.|++++|+++.... ..| .| .++.+.|.+||.+..-+.+....+-|+..
T Consensus 88 D~d~~~~la~~~~I~siPtl~~F~~g~~~~~~~~~~~~~~~~~y~~~~~~~~~ae~la~fi~~~t~~~i~I~rp~ny~~ 166 (178)
T 3ga4_A 88 DVNEVPQLVKDLKLQNVPHLVVYPPAESNKQSQFEWKTSPFYQYSLVPENAENTLQFGDFLAKILNISITVPQAFNVQE 166 (178)
T ss_dssp ETTTCHHHHHHTTCCSSCEEEEECCCCGGGGGGCCTTTSCCEEECCCGGGTTCHHHHHHHHHHHHTCCCCCCCSCC---
T ss_pred ECccCHHHHHHcCCCCCCEEEEEcCCCCCCccccccccCCcceeecccCCCcCHHHHHHHHHHhcCCCccccCCCChHH
Confidence 4 2467889999999999999999864322 234 24 67889999999987655554444445443
|
| >2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A | Back alignment and structure |
|---|
Probab=97.65 E-value=0.001 Score=50.68 Aligned_cols=104 Identities=9% Similarity=0.191 Sum_probs=73.5
Q ss_pred Ceeec-ChhhHHHhhcC----CCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCCeEEEEEcCcchhhHhhhcCCcCCCCC
Q 020623 130 LSVPI-NQDTLNLLKDD----KRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKL 204 (323)
Q Consensus 130 lv~~~-t~~~~~~~~~~----~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~l~F~~vd~~~~~~~~~~~gl~~~~~~ 204 (323)
.+.++ +.+++...... ++++++.|... .-..-..+...|++++++++++.|+.+|.+..+.+++.||+ ...
T Consensus 7 ~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~-~C~~C~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~v---~~~ 82 (118)
T 2vm1_A 7 AVIACHTKQEFDTHMANGKDTGKLVIIDFTAS-WCGPCRVIAPVFAEYAKKFPGAIFLKVDVDELKDVAEAYNV---EAM 82 (118)
T ss_dssp CEEECCSHHHHHHHHHHHHHHTCCEEEEEECT-TCHHHHHHHHHHHHHHHHCTTSEEEEEETTTSHHHHHHTTC---CSB
T ss_pred ceEEecCHHHHHHHHHhcccCCCEEEEEEECC-CCHhHHHHhHHHHHHHHHCCCcEEEEEEcccCHHHHHHcCC---CcC
Confidence 45555 46777765543 67887777753 22334567788999999998899999999887788899999 579
Q ss_pred CeEEEEeCCcceeeccCCCCCCCCCCHHHHHHHHHHHHcC
Q 020623 205 PKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEGYREG 244 (323)
Q Consensus 205 P~ivI~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~~~~~G 244 (323)
|.++++...+...... + .+.+.|.++|+.+++.
T Consensus 83 Pt~~~~~~g~~~~~~~------g-~~~~~l~~~l~~~~~~ 115 (118)
T 2vm1_A 83 PTFLFIKDGEKVDSVV------G-GRKDDIHTKIVALMGS 115 (118)
T ss_dssp SEEEEEETTEEEEEEE------S-CCHHHHHHHHHHHHC-
T ss_pred cEEEEEeCCeEEEEec------C-CCHHHHHHHHHHHhcc
Confidence 9998875332221211 2 4678999999998764
|
| >1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=97.63 E-value=0.0011 Score=51.12 Aligned_cols=103 Identities=12% Similarity=0.174 Sum_probs=74.0
Q ss_pred CCCeeecChhhHHHhhc--CCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCCeEEEEEcCc-chhhHhhhcCCcCCCCC
Q 020623 128 LPLSVPINQDTLNLLKD--DKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIK-QFADFADTFEANKKSKL 204 (323)
Q Consensus 128 ~Plv~~~t~~~~~~~~~--~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~l~F~~vd~~-~~~~~~~~~gl~~~~~~ 204 (323)
...+..++.+++..... .++++++.|... .=..-..+...+.+++++++++.|+.+|.+ ....+++.||+ ...
T Consensus 17 ~~~v~~l~~~~~~~~~~~~~~~~~vv~f~a~-wC~~C~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~~~~~~v---~~~ 92 (124)
T 1faa_A 17 VGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQ-WCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGI---RVV 92 (124)
T ss_dssp TTSEEEECTTTHHHHHHHTTTSCEEEEEECT-TCHHHHHHHHHHHHHHHHCTTSEEEEEECSSTTHHHHHHHCC---SSS
T ss_pred CCceEEecchhHHHHHHhcCCCEEEEEEECC-cCHhHHHHhHHHHHHHHHCCCCEEEEEecCcchHHHHHHcCC---Cee
Confidence 45678889888887654 567887777753 223345677889999999989999999997 56778888999 578
Q ss_pred CeEEEEeCCc-ceeeccCCCCCCCCCCHHHHHHHHHHHH
Q 020623 205 PKMVVWDGNE-NYLTVIGSESIDEEDQGSQISRFLEGYR 242 (323)
Q Consensus 205 P~ivI~~~~~-kY~~~~~~~~~~~~~t~~~I~~Fi~~~~ 242 (323)
|.+++....+ .... .| ...+.+.+|++.++
T Consensus 93 Pt~~~~~~G~~~~~~-~G-------~~~~~l~~~i~~~~ 123 (124)
T 1faa_A 93 PTFKILKENSVVGEV-TG-------AKYDKLLEAIQAAR 123 (124)
T ss_dssp SEEEEEETTEEEEEE-ES-------SCHHHHHHHHHHHT
T ss_pred eEEEEEeCCcEEEEE-cC-------CCHHHHHHHHHHhh
Confidence 9987764332 2222 12 24789999998875
|
| >2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A | Back alignment and structure |
|---|
Probab=97.61 E-value=0.0011 Score=50.67 Aligned_cols=99 Identities=12% Similarity=0.285 Sum_probs=71.7
Q ss_pred eeecCh-hhHHHhhc--CCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCCeEEEEEcCcchhhHhhhcCCcCCCCCCeE
Q 020623 131 SVPINQ-DTLNLLKD--DKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKM 207 (323)
Q Consensus 131 v~~~t~-~~~~~~~~--~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~l~F~~vd~~~~~~~~~~~gl~~~~~~P~i 207 (323)
+.+++. +++..... .++++++.|... .=..-..+...+.++++++ ++.|+.+|.+..+.+++.||+ ...|.+
T Consensus 15 v~~l~~~~~~~~~l~~~~~~~~vv~f~a~-wC~~C~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~v---~~~Pt~ 89 (117)
T 2xc2_A 15 LIELKQDGDLESLLEQHKNKLVVVDFFAT-WCGPCKTIAPLFKELSEKY-DAIFVKVDVDKLEETARKYNI---SAMPTF 89 (117)
T ss_dssp EEECCSTTHHHHHHHHTTTSCEEEEEECT-TCHHHHHHHHHHHHHHTTS-SSEEEEEETTTSHHHHHHTTC---CSSSEE
T ss_pred eEEeCCHHHHHHHHHhCCCCEEEEEEECC-CCHhHHHHhHHHHHHHHHc-CcEEEEEECCccHHHHHHcCC---CccceE
Confidence 667776 78877665 567887777753 2233466778899999998 799999999888888899999 579998
Q ss_pred EEEeCCcceeeccCCCCCCCCCCHHHHHHHHHHH
Q 020623 208 VVWDGNENYLTVIGSESIDEEDQGSQISRFLEGY 241 (323)
Q Consensus 208 vI~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~~~ 241 (323)
++....+...... + .+.+.|.+|++++
T Consensus 90 ~~~~~G~~~~~~~------G-~~~~~l~~~l~~~ 116 (117)
T 2xc2_A 90 IAIKNGEKVGDVV------G-ASIAKVEDMIKKF 116 (117)
T ss_dssp EEEETTEEEEEEE------S-SCHHHHHHHHHHH
T ss_pred EEEeCCcEEEEEe------C-CCHHHHHHHHHHh
Confidence 8875332211111 2 4678899999876
|
| >3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00079 Score=51.25 Aligned_cols=96 Identities=11% Similarity=0.230 Sum_probs=67.7
Q ss_pred ChhhHHHhhc-C-CCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCCeEEEEEcCcchhhHhhhcCCcCCCCCCeEEEEeC
Q 020623 135 NQDTLNLLKD-D-KRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDG 212 (323)
Q Consensus 135 t~~~~~~~~~-~-~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI~~~ 212 (323)
|.+++..... . ++++++-|... -=..-+.+...+.++|+.++++.|+.+|.++.+.+++.||+ ..+|.+++...
T Consensus 7 ~~~~f~~~l~~~~~k~vvv~F~a~-wC~~C~~~~p~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~V---~~~PT~~~~~~ 82 (105)
T 3zzx_A 7 DQEDFTKQLNEAGNKLVVIDFYAT-WCGPCKMIAPKLEELSQSMSDVVFLKVDVDECEDIAQDNQI---ACMPTFLFMKN 82 (105)
T ss_dssp SHHHHHHHHHHTTTSEEEEEEECT-TCHHHHHHHHHHHHHHHHCTTEEEEEEETTTCHHHHHHTTC---CBSSEEEEEET
T ss_pred CHHHHHHHHHhcCCCEEEEEEECC-CCCCccCCCcchhhhhhccCCeEEEEEecccCHHHHHHcCC---CeecEEEEEEC
Confidence 3466766543 3 45666656652 11334567788999999999999999999988899999999 57999988764
Q ss_pred CcceeeccCCCCCCCCCCHHHHHHHHHHH
Q 020623 213 NENYLTVIGSESIDEEDQGSQISRFLEGY 241 (323)
Q Consensus 213 ~~kY~~~~~~~~~~~~~t~~~I~~Fi~~~ 241 (323)
.+.-....| .+.+.|.+||++.
T Consensus 83 G~~v~~~~G-------~~~~~l~~~i~k~ 104 (105)
T 3zzx_A 83 GQKLDSLSG-------ANYDKLLELVEKN 104 (105)
T ss_dssp TEEEEEEES-------CCHHHHHHHHHHH
T ss_pred CEEEEEEeC-------cCHHHHHHHHHhc
Confidence 332211122 4678999999875
|
| >2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00068 Score=54.43 Aligned_cols=113 Identities=13% Similarity=0.092 Sum_probs=76.0
Q ss_pred HHHHHhhcCCCeeecChhhHHHhhcCC-CcEEEEEEeCCC-hhHHHHHHHHHHHHHHhCCC-eEEEEEcCcchhhHhhhc
Q 020623 120 EEFIKQNFLPLSVPINQDTLNLLKDDK-RKIVLAIVEDET-EEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTF 196 (323)
Q Consensus 120 ~~fI~~~~~Plv~~~t~~~~~~~~~~~-~~~v~~f~~~~~-~e~~~~~~~~l~~~A~~~~~-l~F~~vd~~~~~~~~~~~ 196 (323)
.+-+..+.+| ++|.++|....... .|+++.|...-- -..-+.+...|.++|++|.+ +.|+.+|.++.+.++..|
T Consensus 9 ~rl~~~~g~~---~vt~~~F~~~v~~~~~~vlVdF~A~wCr~gpCk~iaPvleela~e~~~~v~~~KVdvDe~~~la~~y 85 (137)
T 2qsi_A 9 RAAARPNAPT---LVDEATVDDFIAHSGKIVVLFFRGDAVRFPEAADLAVVLPELINAFPGRLVAAEVAAEAERGLMARF 85 (137)
T ss_dssp --------CE---EECTTTHHHHHHTSSSEEEEEECCCTTTCTTHHHHHHHHHHHHHTSTTTEEEEEECGGGHHHHHHHH
T ss_pred HHHHHhcCCc---ccCHhHHHHHHhcCCCcEEEEEeCCccCCCchhhHHhHHHHHHHHccCCcEEEEEECCCCHHHHHHc
Confidence 3344445555 77888888765444 477777765211 02234566899999999987 999999999988999999
Q ss_pred CCcCCCCCCeEEEEeCCcceeeccCCCCCCCCCCHHHHHHHHHHHHcC
Q 020623 197 EANKKSKLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEGYREG 244 (323)
Q Consensus 197 gl~~~~~~P~ivI~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~~~~~G 244 (323)
|+ ...|.++++...+.-... .+-...+.|.++|+.+++.
T Consensus 86 gV---~siPTlilFkdG~~v~~~------vG~~~k~~l~~~l~~~l~~ 124 (137)
T 2qsi_A 86 GV---AVCPSLAVVQPERTLGVI------AKIQDWSSYLAQIGAMLAE 124 (137)
T ss_dssp TC---CSSSEEEEEECCEEEEEE------ESCCCHHHHHHHHHHHHHH
T ss_pred CC---ccCCEEEEEECCEEEEEE------eCCCCHHHHHHHHHHHhcc
Confidence 99 589999998754321111 2345678999999998843
|
| >1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00068 Score=51.22 Aligned_cols=102 Identities=9% Similarity=0.157 Sum_probs=71.6
Q ss_pred eeec-ChhhHHHhhc----CCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCCeEEEEEcCcchhhHhhhcCCcCCCCCC
Q 020623 131 SVPI-NQDTLNLLKD----DKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLP 205 (323)
Q Consensus 131 v~~~-t~~~~~~~~~----~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~l~F~~vd~~~~~~~~~~~gl~~~~~~P 205 (323)
+.++ +.+++..... .++++++.|... .-..-..+...|.++++.++++.|+.+|.+..+.+++.||+ ...|
T Consensus 6 v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~-~C~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~~~~~~~~v---~~~P 81 (113)
T 1ti3_A 6 VIACHTVDTWKEHFEKGKGSQKLIVVDFTAS-WCPPCKMIAPIFAELAKKFPNVTFLKVDVDELKAVAEEWNV---EAMP 81 (113)
T ss_dssp EEEECSHHHHHHHHHHHTTSSSEEEEEEECS-SCHHHHHHHHHHHHHHHHCSSEEEEEEETTTCHHHHHHHHC---SSTT
T ss_pred eeEeccHHHHHHHHHHhhhcCCeEEEEEECC-CCHHHHHHHHHHHHHHHhCCCcEEEEEEccccHHHHHhCCC---Cccc
Confidence 4444 5677766544 367777777653 22334567788999999998899999999888888899999 5789
Q ss_pred eEEEEeCCcceeeccCCCCCCCCCCHHHHHHHHHHHHc
Q 020623 206 KMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEGYRE 243 (323)
Q Consensus 206 ~ivI~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~~~~~ 243 (323)
.+++....+...... + .+.+.|.+|+++++.
T Consensus 82 t~~~~~~G~~~~~~~------g-~~~~~l~~~l~~~~~ 112 (113)
T 1ti3_A 82 TFIFLKDGKLVDKTV------G-ADKDGLPTLVAKHAT 112 (113)
T ss_dssp EEEEEETTEEEEEEE------C-CCTTHHHHHHHHHHH
T ss_pred EEEEEeCCEEEEEEe------c-CCHHHHHHHHHHhhc
Confidence 998885332211111 2 467889999998874
|
| >2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00057 Score=60.55 Aligned_cols=97 Identities=13% Similarity=0.116 Sum_probs=73.8
Q ss_pred CCceecCChHHHHHHHHhcCCcccEEEEec--C-C---hhHHHHHHHhhc---CceeEEeec-cc-----chhhHhhcCC
Q 020623 27 PDVSILNSDAEVSDFVENAGTFFPLFIGFG--L-D---ESVMSNLALKYK---KKAWFAVAK-DF-----SEDTMVLYDF 91 (323)
Q Consensus 27 p~v~~i~s~~~l~~fl~~~~~~~~~vVgf~--~-~---~~~f~~~A~~~~---~~~~F~~~~-~~-----~~~~~~~~~~ 91 (323)
+.|..++ .+++++++..+. +++|-|+ . . .+.|.++|..+. .++.|+.++ +. ..+++.+|++
T Consensus 16 ~~v~~Lt-~~nF~~vi~~~~---~vlV~Fy~~ApWCgl~P~~e~lA~~~~~~~~~v~~akVD~d~~g~~~n~~la~~~~V 91 (248)
T 2c0g_A 16 TGCVDLD-ELSFEKTVERFP---YSVVKFDIASPYGEKHEAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGDRYKV 91 (248)
T ss_dssp TTCEECC-TTTHHHHHTTSS---EEEEEEEESSCCSHHHHHHHHHHHHHHHHCSSEEEEEEEECSSTTCTTHHHHHHTTC
T ss_pred CCcEECC-HHHHHHHHhcCC---CEEEEEECCCCCCccHHHHHHHHHHHhccCCCeEEEEEECCcccccccHHHHHHhCC
Confidence 3477774 588988886655 5778777 3 3 468889999884 467887775 23 4689999999
Q ss_pred C--CCCeEEEecCCC-CCCccc--cCCCCHHHHHHHHHhhcC
Q 020623 92 D--KVPALVALQPSY-NEHNIF--YGPFDEEFLEEFIKQNFL 128 (323)
Q Consensus 92 ~--~~p~ivv~k~~~-~~~~~y--~g~~~~~~L~~fI~~~~~ 128 (323)
. ..|++++|+ +. .....| .|..+.+.|.+||..+.-
T Consensus 92 ~~~~~PTl~~F~-G~~~~~~~y~~~G~~~~~~L~~fi~~~~~ 132 (248)
T 2c0g_A 92 DDKNFPSIFLFK-GNADEYVQLPSHVDVTLDNLKAFVSANTP 132 (248)
T ss_dssp CTTSCCEEEEES-SSSSSEEECCTTSCCCHHHHHHHHHHHSS
T ss_pred CcCCCCeEEEEe-CCcCcceeecccCCCCHHHHHHHHHHhhc
Confidence 9 899999998 54 234567 899999999999999853
|
| >1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00052 Score=53.32 Aligned_cols=108 Identities=10% Similarity=0.100 Sum_probs=78.5
Q ss_pred CCeeecChhhHHHhhcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC--eEEEEEcCcchhhHhhhcCCcCCCCCCe
Q 020623 129 PLSVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE--LVFCYVGIKQFADFADTFEANKKSKLPK 206 (323)
Q Consensus 129 Plv~~~t~~~~~~~~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~--l~F~~vd~~~~~~~~~~~gl~~~~~~P~ 206 (323)
..+..++.+++..+.. .++++.|... .=..-..+...|.++++++++ +.|+.+|.+....+++.|++ ...|.
T Consensus 7 ~~v~~l~~~~f~~~~~--~~vlv~f~a~-wC~~C~~~~p~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v---~~~Pt 80 (126)
T 1x5e_A 7 GNVRVITDENWRELLE--GDWMIEFYAP-WCPACQNLQPEWESFAEWGEDLEVNIAKVDVTEQPGLSGRFII---NALPT 80 (126)
T ss_dssp CSEEECCTTTHHHHTS--SEEEEEEECS-SCHHHHHHHHHHHHHHHHHGGGTCEEEEEETTTCHHHHHHTTC---CSSSE
T ss_pred CccEEecHHHHHHHhC--CCEEEEEECC-CCHHHHHHhHHHHHHHHHhccCCeEEEEEECcCCHHHHHHcCC---cccCE
Confidence 4578899999998765 3466666553 223345677888889988873 99999999888888899999 57999
Q ss_pred EEEEeCCcceeeccCCCCCCCCCCHHHHHHHHHHHHcCccccc
Q 020623 207 MVVWDGNENYLTVIGSESIDEEDQGSQISRFLEGYREGRTEQK 249 (323)
Q Consensus 207 ivI~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~~~~~Gkl~~~ 249 (323)
++++. +++-... .+..+.+.|.+|+++.+...++|.
T Consensus 81 ~~~~~-~G~~~~~------~G~~~~~~l~~~l~~~~~~~~~~~ 116 (126)
T 1x5e_A 81 IYHCK-DGEFRRY------QGPRTKKDFINFISDKEWKSIEPV 116 (126)
T ss_dssp EEEEE-TTEEEEC------CSCCCHHHHHHHHHTCGGGGSCEE
T ss_pred EEEEe-CCeEEEe------ecCCCHHHHHHHHHHHhhccCCCc
Confidence 99884 4442222 345788999999998876655553
|
| >2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00058 Score=52.89 Aligned_cols=103 Identities=11% Similarity=0.161 Sum_probs=73.7
Q ss_pred CCeeecCh-hhHHHhhcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC--eEEEEEcCcchhhHhhhcCCcCCCCCC
Q 020623 129 PLSVPINQ-DTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE--LVFCYVGIKQFADFADTFEANKKSKLP 205 (323)
Q Consensus 129 Plv~~~t~-~~~~~~~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~--l~F~~vd~~~~~~~~~~~gl~~~~~~P 205 (323)
+.+..++. +++......++++++.|.... -..-..+...|.++++++++ +.|+.+|.+..+.+++.||+ ...|
T Consensus 15 ~~~~~i~~~~~f~~~l~~~k~vvv~f~a~~-C~~C~~~~~~l~~l~~~~~~~~v~~~~vd~d~~~~~~~~~~v---~~~P 90 (121)
T 2j23_A 15 GSVQVISSYDQFKQVTGGDKVVVIDFWATW-CGPCKMIGPVFEKISDTPAGDKVGFYKVDVDEQSQIAQEVGI---RAMP 90 (121)
T ss_dssp CCEEECCSHHHHHHHHSSSSCEEEEEECTT-CSTHHHHHHHHHHHHTSTHHHHSEEEEEETTTCHHHHHHHTC---CSSS
T ss_pred cceEEcCCHHHHHHHHcCCCEEEEEEECCC-CHhHHHHHHHHHHHHHHCcCCcEEEEEEECcCCHHHHHHcCC---Cccc
Confidence 34555554 778777777778877777531 12345677788999999886 99999999988888899999 5799
Q ss_pred eEEEEeCCcceeeccCCCCCCCCCCHHHHHHHHHHHH
Q 020623 206 KMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEGYR 242 (323)
Q Consensus 206 ~ivI~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~~~~ 242 (323)
.++++...+...... +. +.+.|.+||+.++
T Consensus 91 t~~~~~~G~~~~~~~------G~-~~~~l~~~l~~~l 120 (121)
T 2j23_A 91 TFVFFKNGQKIDTVV------GA-DPSKLQAAITQHS 120 (121)
T ss_dssp EEEEEETTEEEEEEE------SS-CHHHHHHHHHHHT
T ss_pred EEEEEECCeEEeeEc------CC-CHHHHHHHHHHhh
Confidence 998886433221121 23 7889999999875
|
| >1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2 | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00015 Score=55.33 Aligned_cols=105 Identities=9% Similarity=0.135 Sum_probs=74.6
Q ss_pred CeeecChhhHHHhhcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCC---C-eEEEEEcCcchhhHhhhcCCcCCCCCC
Q 020623 130 LSVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANR---E-LVFCYVGIKQFADFADTFEANKKSKLP 205 (323)
Q Consensus 130 lv~~~t~~~~~~~~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~---~-l~F~~vd~~~~~~~~~~~gl~~~~~~P 205 (323)
.+..++.+++......++++++.|.... =..-..+...+.++++.++ . +.|+.+|....+.+++.+|+ ...|
T Consensus 8 ~v~~l~~~~~~~~~~~~~~~lv~f~~~~-C~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v---~~~P 83 (120)
T 1mek_A 8 HVLVLRKSNFAEALAAHKYLLVEFYAPW-CGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGV---RGYP 83 (120)
T ss_dssp TEEECCTTTHHHHHHHCSEEEEEEECSS-CSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTCCSSHHHHTC---CSSS
T ss_pred CcEEechhhHHHHHccCCeEEEEEECCC-CHHHHHhhHHHHHHHHHHhccCCcEEEEEEcCCCCHHHHHHCCC---Cccc
Confidence 4778899999887777778877776531 1122345567788888875 2 99999999877778888999 5799
Q ss_pred eEEEEeCCcce--eeccCCCCCCCCCCHHHHHHHHHHHHcC
Q 020623 206 KMVVWDGNENY--LTVIGSESIDEEDQGSQISRFLEGYREG 244 (323)
Q Consensus 206 ~ivI~~~~~kY--~~~~~~~~~~~~~t~~~I~~Fi~~~~~G 244 (323)
.++++...+.. ... .+..+.+.|.+|++..++.
T Consensus 84 t~~~~~~g~~~~~~~~------~g~~~~~~l~~~l~~~~~~ 118 (120)
T 1mek_A 84 TIKFFRNGDTASPKEY------TAGREADDIVNWLKKRTGP 118 (120)
T ss_dssp EEEEEESSCSSSCEEC------CCCSSHHHHHHHHHTTSCC
T ss_pred EEEEEeCCCcCCcccc------cCccCHHHHHHHHHhccCC
Confidence 99988543322 222 2357889999999876543
|
| >2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A | Back alignment and structure |
|---|
Probab=97.56 E-value=0.0011 Score=53.67 Aligned_cols=105 Identities=10% Similarity=0.172 Sum_probs=76.3
Q ss_pred CCeeecC-hhhHHHhhcC--CCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCCeEEEEEcCcchhhHhhhcCCcCCCCCC
Q 020623 129 PLSVPIN-QDTLNLLKDD--KRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLP 205 (323)
Q Consensus 129 Plv~~~t-~~~~~~~~~~--~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~l~F~~vd~~~~~~~~~~~gl~~~~~~P 205 (323)
..+..++ .+++..+... ++++++.|... .=..-..+...|.+++++++++.|+.+|.+..+.+++.||+ ..+|
T Consensus 12 ~~v~~l~~~~~~~~~~~~~~~~~vvv~F~a~-wC~~C~~~~p~l~~l~~~~~~v~~~~vd~~~~~~l~~~~~v---~~~P 87 (153)
T 2wz9_A 12 AAVEEVGSAGQFEELLRLKAKSLLVVHFWAP-WAPQCAQMNEVMAELAKELPQVSFVKLEAEGVPEVSEKYEI---SSVP 87 (153)
T ss_dssp CCSEEECSHHHHHHHHHHTTTSCEEEEEECT-TCHHHHHHHHHHHHHHHHCTTSEEEEEETTTSHHHHHHTTC---CSSS
T ss_pred CCeEEcCCHHHHHHHHHhcCCCeEEEEEECC-CCHhHHHHHHHHHHHHHHcCCeEEEEEECCCCHHHHHHcCC---CCCC
Confidence 4455665 5777776654 67887777753 12334567788999999997799999999988888899999 5799
Q ss_pred eEEEEeCCcce-eeccCCCCCCCCCCHHHHHHHHHHHHcCc
Q 020623 206 KMVVWDGNENY-LTVIGSESIDEEDQGSQISRFLEGYREGR 245 (323)
Q Consensus 206 ~ivI~~~~~kY-~~~~~~~~~~~~~t~~~I~~Fi~~~~~Gk 245 (323)
.+++++ +++. ....| .+.+.|.+||+.++...
T Consensus 88 t~~~~~-~G~~~~~~~G-------~~~~~l~~~i~~~l~~~ 120 (153)
T 2wz9_A 88 TFLFFK-NSQKIDRLDG-------AHAPELTKKVQRHASSG 120 (153)
T ss_dssp EEEEEE-TTEEEEEEES-------SCHHHHHHHHHHHSCTT
T ss_pred EEEEEE-CCEEEEEEeC-------CCHHHHHHHHHHHhccc
Confidence 999998 5432 11112 46788999999987654
|
| >2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A | Back alignment and structure |
|---|
Probab=97.56 E-value=0.0007 Score=59.66 Aligned_cols=97 Identities=10% Similarity=0.151 Sum_probs=74.7
Q ss_pred CCceecCChHHHHHHHHhcCCcccEEEEecC--C----hhHHHHHHHhhc--CceeEEeec-c-----cchhhHhhcCCC
Q 020623 27 PDVSILNSDAEVSDFVENAGTFFPLFIGFGL--D----ESVMSNLALKYK--KKAWFAVAK-D-----FSEDTMVLYDFD 92 (323)
Q Consensus 27 p~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~--~----~~~f~~~A~~~~--~~~~F~~~~-~-----~~~~~~~~~~~~ 92 (323)
..|..|+ .++++++++.+. +++|-|+. . .+.|.++|..+. .++.|+.++ + ...+++.+|++.
T Consensus 5 ~~v~~Lt-~~nF~~~i~~~~---~vlV~FyA~~pWCgl~P~~e~lA~~~~~~~~v~~akVDvd~~g~~~~~~l~~~~~V~ 80 (240)
T 2qc7_A 5 KGALPLD-TVTFYKVIPKSK---FVLVKFDTQYPYGEKQDEFKRLAENSASSDDLLVAEVGISDYGDKLNMELSEKYKLD 80 (240)
T ss_dssp TTCEECC-TTHHHHHGGGCS---EEEEEECCSSCCSHHHHHHHHHHHHHTTCTTEEEEEECCCCSSSCCSHHHHHHTTCC
T ss_pred CCceECC-HHHHHHHHcCCC---CEEEEEeCCCCCCcchHHHHHHHHHhcCCCCeEEEEEeCCcccchhhHHHHHHcCCC
Confidence 3467785 588988887665 57788765 3 467889999886 357887775 1 157799999998
Q ss_pred --CCCeEEEecCCC-CCCccccCCCCHHHHHHHHHhhc
Q 020623 93 --KVPALVALQPSY-NEHNIFYGPFDEEFLEEFIKQNF 127 (323)
Q Consensus 93 --~~p~ivv~k~~~-~~~~~y~g~~~~~~L~~fI~~~~ 127 (323)
..|++++|+++. .....|.|..+.+.|.+||..+.
T Consensus 81 ~~~~PTl~~f~~G~~~~~~~y~G~~~~~~L~~fi~~~~ 118 (240)
T 2qc7_A 81 KESYPVFYLFRDGDFENPVPYTGAVKVGAIQRWLKGQG 118 (240)
T ss_dssp GGGCSEEEEEETTCSSCCEECCSCSCHHHHHHHHHHTT
T ss_pred CCCCCEEEEEeCCCcCcceeecCCCCHHHHHHHHHHhc
Confidence 899999998753 23557889999999999999986
|
| >3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.0015 Score=50.90 Aligned_cols=106 Identities=10% Similarity=0.059 Sum_probs=74.7
Q ss_pred CCCeeecChhhHHHhh-cCCC--cEEEEEEeCCChhHHHHHHHHHHHHHHhCCCeEEEEEcCcchhhHhhhcCCcCCCCC
Q 020623 128 LPLSVPINQDTLNLLK-DDKR--KIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKL 204 (323)
Q Consensus 128 ~Plv~~~t~~~~~~~~-~~~~--~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~l~F~~vd~~~~~~~~~~~gl~~~~~~ 204 (323)
+.-+.++|.+++.... ..+. ++++-|... .-..-+.+...|.++|++|+++.|+.+|.++. .+.|++ ..+
T Consensus 2 ~G~v~~it~~~f~~~v~~~~~~~~vvv~F~a~-wc~~C~~~~p~l~~la~~~~~v~f~kvd~d~~---~~~~~v---~~~ 74 (118)
T 3evi_A 2 FGELREISGNQYVNEVTNAEEDVWVIIHLYRS-SIPMCLLVNQHLSLLARKFPETKFVKAIVNSC---IQHYHD---NCL 74 (118)
T ss_dssp CCSCEECCGGGHHHHTTTCCTTCEEEEEEECT-TSHHHHHHHHHHHHHHHHCTTSEEEEEEGGGT---STTCCG---GGC
T ss_pred CcceEEeCHHHHHHHHHhcCCCCeEEEEEeCC-CChHHHHHHHHHHHHHHHCCCCEEEEEEhHHh---HHHCCC---CCC
Confidence 5668889999988644 3333 676667653 22344677789999999998899999999864 577888 579
Q ss_pred CeEEEEeCCcceeeccCCCCC-CCCCCHHHHHHHHHH
Q 020623 205 PKMVVWDGNENYLTVIGSESI-DEEDQGSQISRFLEG 240 (323)
Q Consensus 205 P~ivI~~~~~kY~~~~~~~~~-~~~~t~~~I~~Fi~~ 240 (323)
|.+++....+.-....|..++ ...++.+.|..|+..
T Consensus 75 PT~~~fk~G~~v~~~~G~~~~gg~~~~~~~le~~L~~ 111 (118)
T 3evi_A 75 PTIFVYKNGQIEAKFIGIIECGGINLKLEELEWKLAE 111 (118)
T ss_dssp SEEEEEETTEEEEEEESTTTTTCSSCCHHHHHHHHHT
T ss_pred CEEEEEECCEEEEEEeChhhhCCCCCCHHHHHHHHHH
Confidence 999998764322222243332 236899999999965
|
| >3ec3_A Protein disulfide-isomerase A4; thioredoxin-like fold, endoplasmic reticulum, glycoprotein, redox-active center; 1.92A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00065 Score=59.97 Aligned_cols=118 Identities=16% Similarity=0.177 Sum_probs=79.4
Q ss_pred cccccC--CCCChHHHHHHHHHhcCCCceecCChHHHHHHHHhcCCcccEEEEe-cCC-----h-------hHHHHHHHh
Q 020623 4 IPTEYY--GPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGF-GLD-----E-------SVMSNLALK 68 (323)
Q Consensus 4 ~~~eY~--G~R~a~~Iv~~l~k~~~p~v~~i~s~~~l~~fl~~~~~~~~~vVgf-~~~-----~-------~~f~~~A~~ 68 (323)
....|. |++++++|.+|++...-|-|.+++. +.+..+.... +.++.| +.+ . ..+.++|++
T Consensus 91 ~~~~y~g~~~~~~~~l~~fi~~~~~Plv~e~t~-~n~~~~~~~~----~l~~~~~~~d~~~~~~~~~~~~~~~~~~vAk~ 165 (250)
T 3ec3_A 91 RMHVMDVQGSTEASAIKDYVVKHALPLVGHRKT-SNDAKRYSKR----PLVVVYYSVDFSFDYRTATQFWRNKVLEVAKD 165 (250)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHHSSCTEEEECT-TTHHHHSCSS----SEEEEEECCCCSTTTHHHHHHHHHHHHHHHTT
T ss_pred cceeccCCCCCCHHHHHHHHHHcCCCceeecCc-cchhhhhccC----ccEEEEEecccccccchhHHHHHHHHHHHHHh
Confidence 346788 5899999999999999999999975 4555544322 334443 211 1 256788999
Q ss_pred hcCceeEEeeccc-chhhHhhcCCCC---CCeEEEecCCCCCCcccc-CCCCHHHHHHHHHhhcC
Q 020623 69 YKKKAWFAVAKDF-SEDTMVLYDFDK---VPALVALQPSYNEHNIFY-GPFDEEFLEEFIKQNFL 128 (323)
Q Consensus 69 ~~~~~~F~~~~~~-~~~~~~~~~~~~---~p~ivv~k~~~~~~~~y~-g~~~~~~L~~fI~~~~~ 128 (323)
++ .+.|+.++.. -...+..+|+.. .|.++++.. .+.++.+. +.++.+.|.+|+..-.-
T Consensus 166 ~k-ki~F~~~d~~~~~~~l~~fgl~~~~~~p~~~~~~~-~~~ky~~~~~~~t~~~i~~Fv~~~~~ 228 (250)
T 3ec3_A 166 FP-EYTFAIADEEDYATEVKDLGLSESGGDVNAAILDE-SGKKFAMEPEEFDSDALREFVMAFKK 228 (250)
T ss_dssp CT-TSEEEEEETTTTHHHHHHTTCSSCSCSCEEEEECT-TSCEEECCCCSCCHHHHHHHHHHHHT
T ss_pred hc-ceeEEEEcHHHHHHHHHHcCCCccCCCcEEEEEcC-CCceecCCcccCCHHHHHHHHHHHHC
Confidence 99 8888877431 123455677752 246666653 34455565 67999999999986653
|
| >1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=97.51 E-value=0.0015 Score=50.89 Aligned_cols=100 Identities=9% Similarity=0.118 Sum_probs=70.3
Q ss_pred Ceeec-ChhhHHHhhc----CCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCCeEEEEEcCcchhhHhhhcCCcCCCCC
Q 020623 130 LSVPI-NQDTLNLLKD----DKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKL 204 (323)
Q Consensus 130 lv~~~-t~~~~~~~~~----~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~l~F~~vd~~~~~~~~~~~gl~~~~~~ 204 (323)
.+.++ +.+++..... .++++++.|... .=..-..+...|.+++++++++.|+.+|.+....+++.||+ ...
T Consensus 17 ~v~~l~~~~~~~~~l~~~~~~~k~vvv~f~a~-wC~~C~~~~~~l~~l~~~~~~v~~~~vd~d~~~~l~~~~~v---~~~ 92 (124)
T 1xfl_A 17 QVIACHTVETWNEQLQKANESKTLVVVDFTAS-WCGPCRFIAPFFADLAKKLPNVLFLKVDTDELKSVASDWAI---QAM 92 (124)
T ss_dssp CCEEESSHHHHHHHHHHHHHTTCEEEEEEECT-TCHHHHHHHHHHHHHHHHCSSEEEEEEETTTSHHHHHHTTC---CSS
T ss_pred cEEEeCCHHHHHHHHHHhhhcCCEEEEEEECC-CCHHHHHHHHHHHHHHHHCCCcEEEEEECccCHHHHHHcCC---Ccc
Confidence 34555 5566665443 367777777653 22334567788999999998899999999887888899999 578
Q ss_pred CeEEEEeCCcc--eeeccCCCCCCCCCCHHHHHHHHHHHH
Q 020623 205 PKMVVWDGNEN--YLTVIGSESIDEEDQGSQISRFLEGYR 242 (323)
Q Consensus 205 P~ivI~~~~~k--Y~~~~~~~~~~~~~t~~~I~~Fi~~~~ 242 (323)
|.+++.. +++ +.. . + .+.+.|.++|+.++
T Consensus 93 Pt~~~~~-~G~~~~~~-~------G-~~~~~l~~~l~~~l 123 (124)
T 1xfl_A 93 PTFMFLK-EGKILDKV-V------G-AKKDELQSTIAKHL 123 (124)
T ss_dssp SEEEEEE-TTEEEEEE-E------S-CCHHHHHHHHHHHC
T ss_pred CEEEEEE-CCEEEEEE-e------C-CCHHHHHHHHHHhc
Confidence 9988874 432 222 1 2 47889999998875
|
| >2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00046 Score=54.06 Aligned_cols=109 Identities=9% Similarity=0.128 Sum_probs=77.9
Q ss_pred CCCeeecChhhHHHhhc-CCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCC--C-eEEEEEcCcchhhHhhhcCCcCCCC
Q 020623 128 LPLSVPINQDTLNLLKD-DKRKIVLAIVEDETEEKSQKLVTTLKAAASANR--E-LVFCYVGIKQFADFADTFEANKKSK 203 (323)
Q Consensus 128 ~Plv~~~t~~~~~~~~~-~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~--~-l~F~~vd~~~~~~~~~~~gl~~~~~ 203 (323)
-+.|..++.+++..... .++++++.|... .=..-..+...|.+++++++ + +.|+.+|.+....+.+.|++ ..
T Consensus 6 ~~~v~~l~~~~~~~~~~~~~~~vlv~f~a~-wC~~C~~~~p~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v---~~ 81 (133)
T 2dj3_A 6 SGPVKVVVGKTFDAIVMDPKKDVLIEFYAP-WCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATANDITNDQYKV---EG 81 (133)
T ss_dssp SCSSEECCTTTCCCCCTCTTSEEEEEECCT-TCSHHHHHHHHHHHHHHHHTTSSSEEEEEECTTTSCCCCSSCCC---SS
T ss_pred CCceEEEcCCCHHHHhccCCCcEEEEEECC-CChhHHHHHHHHHHHHHHhcCCCCEEEEEecCCcCHHHHhhcCC---Cc
Confidence 35688899988887654 367777766642 11234567778899999886 4 99999999876666777888 57
Q ss_pred CCeEEEEeCCcc--eeeccCCCCCCCCCCHHHHHHHHHHHHcCc
Q 020623 204 LPKMVVWDGNEN--YLTVIGSESIDEEDQGSQISRFLEGYREGR 245 (323)
Q Consensus 204 ~P~ivI~~~~~k--Y~~~~~~~~~~~~~t~~~I~~Fi~~~~~Gk 245 (323)
+|.+++++..++ ..... .+..+.+.|.+||+..+...
T Consensus 82 ~Pt~~~~~~g~~~~~~~~~-----gg~~~~~~l~~~l~~~~~~~ 120 (133)
T 2dj3_A 82 FPTIYFAPSGDKKNPIKFE-----GGNRDLEHLSKFIDEHATKR 120 (133)
T ss_dssp SSEEEEECTTCTTSCEECC-----SSCCSTTHHHHHHHHHSSSC
T ss_pred CCEEEEEeCCCcccceEec-----CCCcCHHHHHHHHHHhcccc
Confidence 999999986532 11111 13467889999999997655
|
| >3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A* | Back alignment and structure |
|---|
Probab=97.47 E-value=0.0018 Score=54.36 Aligned_cols=122 Identities=16% Similarity=0.214 Sum_probs=83.4
Q ss_pred HHHHHHhhcCCCeeecChhhHHHhhcC--CCcEEEEEEeCC------ChhHHHHHHHHHHHHHHhCC-----C-eEEEEE
Q 020623 119 LEEFIKQNFLPLSVPINQDTLNLLKDD--KRKIVLAIVEDE------TEEKSQKLVTTLKAAASANR-----E-LVFCYV 184 (323)
Q Consensus 119 L~~fI~~~~~Plv~~~t~~~~~~~~~~--~~~~v~~f~~~~------~~e~~~~~~~~l~~~A~~~~-----~-l~F~~v 184 (323)
+.+++....-..+.++|..||..+... +.++++.|.... -=..-+.+...|.++|+++. + +.|+.+
T Consensus 8 ~~~l~~l~~~~~vi~lt~~nF~~~v~~~~~~~vvV~F~A~~~~~~~~wCgpCk~l~P~~e~lA~~~~~~~~~~~v~f~kv 87 (178)
T 3ga4_A 8 IDDILQLKDDTGVITVTADNYPLLSRGVPGYFNILYITMRGTNSNGMSCQLCHDFEKTYHAVADVIRSQAPQSLNLFFTV 87 (178)
T ss_dssp CHHHHTTCCTTSEEECCTTTHHHHTTCCTTCEEEEEEECCSBCTTSCBCHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEE
T ss_pred HHHHHHhhccCCCEECCHHHHHHHHcccCCCcEEEEEeCCCCCCCCCCChhHHHHHHHHHHHHHHhhhccCCCCEEEEEE
Confidence 344455455567999999999988654 346677676521 00123567789999999876 6 999999
Q ss_pred cCcchhhHhhhcCCcCCCCCCeEEEEeCCc--c---eeecc---CCCCCC-C-CCCHHHHHHHHHHHHc
Q 020623 185 GIKQFADFADTFEANKKSKLPKMVVWDGNE--N---YLTVI---GSESID-E-EDQGSQISRFLEGYRE 243 (323)
Q Consensus 185 d~~~~~~~~~~~gl~~~~~~P~ivI~~~~~--k---Y~~~~---~~~~~~-~-~~t~~~I~~Fi~~~~~ 243 (323)
|.++.+.++..||| ...|.++++.+.+ . +.... ...++. + ..+.+.|.+||.+-..
T Consensus 88 D~d~~~~la~~~~I---~siPtl~~F~~g~~~~~~~~~~~~~~~~~y~~~~~~~~~ae~la~fi~~~t~ 153 (178)
T 3ga4_A 88 DVNEVPQLVKDLKL---QNVPHLVVYPPAESNKQSQFEWKTSPFYQYSLVPENAENTLQFGDFLAKILN 153 (178)
T ss_dssp ETTTCHHHHHHTTC---CSSCEEEEECCCCGGGGGGCCTTTSCCEEECCCGGGTTCHHHHHHHHHHHHT
T ss_pred ECccCHHHHHHcCC---CCCCEEEEEcCCCCCCccccccccCCcceeecccCCCcCHHHHHHHHHHhcC
Confidence 99988899999999 6899999988632 2 00000 000111 2 5788999999998665
|
| >3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=97.44 E-value=0.0014 Score=49.20 Aligned_cols=95 Identities=13% Similarity=0.281 Sum_probs=69.5
Q ss_pred CCceecCChHHHHHHH-HhcCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeec-ccchhhHhhcCCCCCCe
Q 020623 27 PDVSILNSDAEVSDFV-ENAGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAK-DFSEDTMVLYDFDKVPA 96 (323)
Q Consensus 27 p~v~~i~s~~~l~~fl-~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~-~~~~~~~~~~~~~~~p~ 96 (323)
.++..+ +.+++++.+ +.++ +++|-|... ...+.+++..+.+.+.|...+ +..++++.++++...|+
T Consensus 4 ~~v~~l-~~~~~~~~~~~~~~---~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt 79 (111)
T 3gnj_A 4 MSLEKL-DTNTFEQLIYDEGK---ACLVMFSRKNCHVCQKVTPVLEELRLNYEESFGFYYVDVEEEKTLFQRFSLKGVPQ 79 (111)
T ss_dssp CCSEEC-CHHHHHHHHTTSCC---CEEEEEECSSCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTCHHHHHHTTCCSSCE
T ss_pred Ccceec-CHHHHHHHHHhcCC---EEEEEEeCCCChhHHHHHHHHHHHHHHcCCceEEEEEECCcChhHHHhcCCCcCCE
Confidence 457778 689999988 4444 577777543 246788898888777776653 23567888999999999
Q ss_pred EEEecCCCCCCccccCCCCHHHHHHHHHhh
Q 020623 97 LVALQPSYNEHNIFYGPFDEEFLEEFIKQN 126 (323)
Q Consensus 97 ivv~k~~~~~~~~y~g~~~~~~L~~fI~~~ 126 (323)
+++|+++ .....+.|..+.+.|.+||.+.
T Consensus 80 ~~~~~~g-~~~~~~~g~~~~~~l~~~l~~~ 108 (111)
T 3gnj_A 80 ILYFKDG-EYKGKMAGDVEDDEVEQMIADV 108 (111)
T ss_dssp EEEEETT-EEEEEEESSCCHHHHHHHHHHH
T ss_pred EEEEECC-EEEEEEeccCCHHHHHHHHHHH
Confidence 9999642 1222466888999999999865
|
| >3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00055 Score=53.55 Aligned_cols=103 Identities=12% Similarity=0.146 Sum_probs=71.3
Q ss_pred CCCeeecChhhHHHhhcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC-eEEEEEcCcchhhHhhhcCCcCCCCCCe
Q 020623 128 LPLSVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPK 206 (323)
Q Consensus 128 ~Plv~~~t~~~~~~~~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~-l~F~~vd~~~~~~~~~~~gl~~~~~~P~ 206 (323)
.|.+...+.+.+......++++++.|... .=..-..+...+.++++++++ +.|+.+|.+..+.+++.||+ ...|.
T Consensus 24 ~~~~~~~~~~~~~~~~~~~k~vlv~F~a~-wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v---~~~Pt 99 (128)
T 3ul3_B 24 VPRLQQNGSNIINGVNMKNTVIVLYFFAK-WCQACTMQSTEMDKLQKYYGKRIYLLKVDLDKNESLARKFSV---KSLPT 99 (128)
T ss_dssp --CCCCCCCSSSSBTTSCCSEEEEEEECT-TCHHHHHHHHHHHHHHHHHGGGEEEEEEEGGGCHHHHHHTTC---CSSSE
T ss_pred CCccccCCccHHHHHHccCCEEEEEEECC-CCHHHHHHhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCC---CCcCE
Confidence 44555555555555555677887777753 123345677889999999886 99999999988888999999 57999
Q ss_pred EEEEeCCcceeeccCCCCCCCCCCHHHHHHHHHH
Q 020623 207 MVVWDGNENYLTVIGSESIDEEDQGSQISRFLEG 240 (323)
Q Consensus 207 ivI~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~~ 240 (323)
++++...+..... .+..+.+.|.+|++.
T Consensus 100 ~~~~~~G~~~~~~------~G~~~~~~l~~~l~~ 127 (128)
T 3ul3_B 100 IILLKNKTMLARK------DHFVSSNDLIALIKK 127 (128)
T ss_dssp EEEEETTEEEEEE------SSCCCHHHHHHHHTT
T ss_pred EEEEECCEEEEEe------cCCCCHHHHHHHHHh
Confidence 9988533222222 235788999999864
|
| >3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=97.42 E-value=0.0013 Score=49.20 Aligned_cols=96 Identities=19% Similarity=0.293 Sum_probs=70.4
Q ss_pred CCCceecCChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeec-ccchhhHhhcCCCCCCe
Q 020623 26 APDVSILNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAK-DFSEDTMVLYDFDKVPA 96 (323)
Q Consensus 26 ~p~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~-~~~~~~~~~~~~~~~p~ 96 (323)
++.+..+ +.+++++.+..++ +++|-|+.. ...+.+++.++.+.+.|...+ +...+++.++++...|+
T Consensus 3 ~~~v~~l-~~~~~~~~~~~~~---~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt 78 (109)
T 3tco_A 3 EDVTLVL-TEENFDEVIRNNK---LVLVDCWAEWCAPCHLYEPIYKKVAEKYKGKAVFGRLNVDENQKIADKYSVLNIPT 78 (109)
T ss_dssp CCCCEEC-CTTTHHHHHHHSS---EEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTCHHHHHHTTCCSSSE
T ss_pred CCeEEEe-cHHHHHHHHhcCC---eEEEEEECCCCHHHHhhhHHHHHHHHHhCCCceEEEEccccCHHHHHhcCcccCCE
Confidence 3456777 5689999888776 567777543 246788899888777776553 24667888999999999
Q ss_pred EEEecCCCCCCccccCCCCHHHHHHHHHhh
Q 020623 97 LVALQPSYNEHNIFYGPFDEEFLEEFIKQN 126 (323)
Q Consensus 97 ivv~k~~~~~~~~y~g~~~~~~L~~fI~~~ 126 (323)
+++|+++ .....+.|..+.+.|.+||.+.
T Consensus 79 ~~~~~~g-~~~~~~~g~~~~~~l~~~l~~~ 107 (109)
T 3tco_A 79 TLIFVNG-QLVDSLVGAVDEDTLESTVNKY 107 (109)
T ss_dssp EEEEETT-EEEEEEESCCCHHHHHHHHHHH
T ss_pred EEEEcCC-cEEEeeeccCCHHHHHHHHHHH
Confidence 9999642 2223467888999999999865
|
| >2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00095 Score=50.73 Aligned_cols=102 Identities=4% Similarity=0.057 Sum_probs=70.4
Q ss_pred eeecChhhHHHhhcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCCeEEEEEcCcchhhHhhhcCCcCCCCCCeEEEE
Q 020623 131 SVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVW 210 (323)
Q Consensus 131 v~~~t~~~~~~~~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI~ 210 (323)
+..++.+++ .....++++++.|... .=..-..+...|.++++.++++.|+.+|.+....+++.+|+ ...|.++++
T Consensus 5 ~~~~~~~~f-~~~~~~~~~vv~f~a~-wC~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~l~~~~~v---~~~Pt~~~~ 79 (110)
T 2l6c_A 5 RDITTEAGM-AHFEGLSDAIVFFHKN-LCPHCKNMEKVLDKFGARAPQVAISSVDSEARPELMKELGF---ERVPTLVFI 79 (110)
T ss_dssp SBCGGGCSH-HHHTTCSEEEEEEECS-SCSTHHHHHHHHHHHHTTCTTSCEEEEEGGGCHHHHHHTTC---CSSCEEEEE
T ss_pred eecCCHHHH-HHHHcCCCEEEEEECC-CCHhHHHHHHHHHHHHHHCCCcEEEEEcCcCCHHHHHHcCC---cccCEEEEE
Confidence 345667788 4444567777767653 11234567778899999988899999999877788889999 579999988
Q ss_pred eCCcce-eeccCCCCCCCCCCHHHHHHHHHHHHcC
Q 020623 211 DGNENY-LTVIGSESIDEEDQGSQISRFLEGYREG 244 (323)
Q Consensus 211 ~~~~kY-~~~~~~~~~~~~~t~~~I~~Fi~~~~~G 244 (323)
. +++. ... .+..+.+.|.++++.+..+
T Consensus 80 ~-~G~~v~~~------~G~~~~~~l~~~~~~~~~~ 107 (110)
T 2l6c_A 80 R-DGKVAKVF------SGIMNPRELQALYASIHHH 107 (110)
T ss_dssp E-SSSEEEEE------ESCCCHHHHHHHHHTC---
T ss_pred E-CCEEEEEE------cCCCCHHHHHHHHHHHhhh
Confidence 4 4322 111 2346789999999887654
|
| >1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A | Back alignment and structure |
|---|
Probab=97.41 E-value=0.0014 Score=49.48 Aligned_cols=95 Identities=14% Similarity=0.257 Sum_probs=68.5
Q ss_pred CCceecCChHHHHHHHHh----cCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeec-ccchhhHhhcCCCC
Q 020623 27 PDVSILNSDAEVSDFVEN----AGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAK-DFSEDTMVLYDFDK 93 (323)
Q Consensus 27 p~v~~i~s~~~l~~fl~~----~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~-~~~~~~~~~~~~~~ 93 (323)
..+..|++.+++++.+.. ++ +++|-|... ...+.+++..+.+++.|...+ +...+++.++++..
T Consensus 2 ~~v~~i~~~~~~~~~l~~~~~~~~---~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~ 78 (112)
T 1ep7_A 2 GSVIVIDSKAAWDAQLAKGKEEHK---PIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEAAGITA 78 (112)
T ss_dssp CSEEEECSHHHHHHHHHHHHHHTC---CEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTTHHHHHHHTCCB
T ss_pred CcEEEecCHHHHHHHHHhhcccCC---eEEEEEECCCCHHHHHHHHHHHHHHHHcCCCeEEEEEECCchHHHHHHcCCCc
Confidence 357889889999998875 44 467777543 246788888887667666553 23567888999988
Q ss_pred CCeEEEecCCCCCCccccCCCCHHHHHHHHHhh
Q 020623 94 VPALVALQPSYNEHNIFYGPFDEEFLEEFIKQN 126 (323)
Q Consensus 94 ~p~ivv~k~~~~~~~~y~g~~~~~~L~~fI~~~ 126 (323)
.|++++++++ .....+.|. +.+.|.+||.+.
T Consensus 79 ~Pt~~~~~~G-~~~~~~~G~-~~~~l~~~l~~~ 109 (112)
T 1ep7_A 79 MPTFHVYKDG-VKADDLVGA-SQDKLKALVAKH 109 (112)
T ss_dssp SSEEEEEETT-EEEEEEESC-CHHHHHHHHHHH
T ss_pred ccEEEEEECC-eEEEEEcCC-CHHHHHHHHHHH
Confidence 9999999642 122245687 889999999865
|
| >2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.0025 Score=49.05 Aligned_cols=104 Identities=18% Similarity=0.271 Sum_probs=72.5
Q ss_pred CCeeec--ChhhHH-HhhcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCCeEEEEEcCcchhhHhhhcCCcCCCCCC
Q 020623 129 PLSVPI--NQDTLN-LLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLP 205 (323)
Q Consensus 129 Plv~~~--t~~~~~-~~~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~l~F~~vd~~~~~~~~~~~gl~~~~~~P 205 (323)
|.+..+ +.+++. .+...++++++.|... .=..-..+...|.+++++++++.|+.+|.+....+++.|++ ...|
T Consensus 3 ~~v~~~~g~~~~~~~~~~~~~~~vlv~f~a~-wC~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~~~~~~~~i---~~~P 78 (118)
T 2f51_A 3 DPIVHFNGTHEALLNRIKEAPGLVLVDFFAT-WCGPCQRLGQILPSIAEANKDVTFIKVDVDKNGNAADAYGV---SSIP 78 (118)
T ss_dssp CCSEEECSCHHHHHHHHHHCSSCEEEEEECT-TCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTC---CSSS
T ss_pred CcceEecCCHHHHHHHHHhCCCEEEEEEECC-CCHHHHHHHHHHHHHHHHCCCeEEEEEECCCCHHHHHhcCC---CCCC
Confidence 345566 567777 4555677888777753 12334567788899999995599999999988888899999 5799
Q ss_pred eEEEEeC---Ccc-eeeccCCCCCCCCCCHHHHHHHHHHHHc
Q 020623 206 KMVVWDG---NEN-YLTVIGSESIDEEDQGSQISRFLEGYRE 243 (323)
Q Consensus 206 ~ivI~~~---~~k-Y~~~~~~~~~~~~~t~~~I~~Fi~~~~~ 243 (323)
.+++++. +++ .....| ...+.|.++++.+..
T Consensus 79 t~~~~~~~~~~G~~~~~~~G-------~~~~~l~~~~~~~~~ 113 (118)
T 2f51_A 79 ALFFVKKEGNEIKTLDQFVG-------ADVSRIKADIEKFKH 113 (118)
T ss_dssp EEEEEEEETTEEEEEEEEES-------CCHHHHHHHHHHHC-
T ss_pred EEEEEeCCCCcceEEEeecC-------CCHHHHHHHHHHhhh
Confidence 9998875 132 111112 456779999988754
|
| >3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ... | Back alignment and structure |
|---|
Probab=97.40 E-value=0.0015 Score=48.61 Aligned_cols=92 Identities=17% Similarity=0.289 Sum_probs=66.2
Q ss_pred ceecCChHHHHHHHHh--cCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeec-ccchhhHhhcCCCCCCeE
Q 020623 29 VSILNSDAEVSDFVEN--AGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAK-DFSEDTMVLYDFDKVPAL 97 (323)
Q Consensus 29 v~~i~s~~~l~~fl~~--~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~-~~~~~~~~~~~~~~~p~i 97 (323)
+..|++.+++++.++. ++ +++|-|... ...+.+++.++.+ +.|...+ +...+++.++++...|++
T Consensus 2 v~~i~~~~~~~~~l~~~~~~---~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~vd~~~~~~~~~~~~v~~~Pt~ 77 (105)
T 3m9j_A 2 VKQIESKTAFQEALDAAGDK---LVVVDFSATWCGPCKMIKPFFHSLSEKYSN-VIFLEVDVDDCQDVASESEVKSMPTF 77 (105)
T ss_dssp CEECCSHHHHHHHHHHTTTS---CEEEEEECTTCHHHHHHHHHHHHHHHHSTT-SEEEEEETTTCHHHHHHTTCCBSSEE
T ss_pred eEEcCCHHHHHHHHHhcCCC---eEEEEEECCCChhhHHHHHHHHHHHHHccC-eEEEEEEhhhhHHHHHHcCCCcCcEE
Confidence 4678899999999884 43 567777543 2467788888865 6555443 235678889999999999
Q ss_pred EEecCCCCCCccccCCCCHHHHHHHHHhh
Q 020623 98 VALQPSYNEHNIFYGPFDEEFLEEFIKQN 126 (323)
Q Consensus 98 vv~k~~~~~~~~y~g~~~~~~L~~fI~~~ 126 (323)
++|+++ +....+.|. +.+.|.+||.+.
T Consensus 78 ~~~~~g-~~~~~~~g~-~~~~l~~~l~~~ 104 (105)
T 3m9j_A 78 QFFKKG-QKVGEFSGA-NKEKLEATINEL 104 (105)
T ss_dssp EEEETT-EEEEEEESS-CHHHHHHHHHHH
T ss_pred EEEECC-eEEEEEeCC-CHHHHHHHHHHh
Confidence 999652 222246687 899999999864
|
| >2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.0012 Score=54.16 Aligned_cols=106 Identities=18% Similarity=0.218 Sum_probs=71.3
Q ss_pred HHHHHHHHHhcCCCceecCChHHHHHHHHh-cCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeec-ccchh
Q 020623 15 ELLVRYLKKFVAPDVSILNSDAEVSDFVEN-AGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAK-DFSED 84 (323)
Q Consensus 15 ~~Iv~~l~k~~~p~v~~i~s~~~l~~fl~~-~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~-~~~~~ 84 (323)
.++...+..++ +..|.|.+++++.+.+ .+. +++|-|+.. .+.+.++|.++.+.+.|..++ +-.++
T Consensus 12 ~~~~~~~~s~m---v~~l~t~~~f~~~v~~~~~k--~VVVdF~A~WCgPCk~m~PvleelA~e~~~~v~f~kVDVDe~~e 86 (160)
T 2av4_A 12 SGLVPRGSSFM---LQHLNSGWAVDQAIVNEDER--LVCIRFGHDYDPDCMKMDELLYKVADDIKNFCVIYLVDITEVPD 86 (160)
T ss_dssp ----------C---CEECCSHHHHHHHHHHCSSS--EEEEEEECTTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTCCT
T ss_pred ccccccchhhh---hhccCCHHHHHHHHHhcCCC--EEEEEEECCCChhHHHHHHHHHHHHHHccCCcEEEEEECCCCHH
Confidence 34555555443 7789999999876653 333 688888753 358899999998777777663 24578
Q ss_pred hHhhcCCCCCCeEEEecCCCCCCc----------cccCCCC-HHHHHHHHHhhc
Q 020623 85 TMVLYDFDKVPALVALQPSYNEHN----------IFYGPFD-EEFLEEFIKQNF 127 (323)
Q Consensus 85 ~~~~~~~~~~p~ivv~k~~~~~~~----------~y~g~~~-~~~L~~fI~~~~ 127 (323)
++.+|++...|++++|+++ +.. ...|... .++|.++|....
T Consensus 87 ~a~~y~V~siPT~~fFk~G--~~v~vd~Gtgd~~k~vGa~~~k~~l~~~ie~~~ 138 (160)
T 2av4_A 87 FNTMYELYDPVSVMFFYRN--KHMMIDLGTGNNNKINWPMNNKQEFIDIVETIF 138 (160)
T ss_dssp TTTTTTCCSSEEEEEEETT--EEEEEECSSSCCSCBCSCCCCHHHHHHHHHHHH
T ss_pred HHHHcCCCCCCEEEEEECC--EEEEEecCCCCcCeEEeecCCHHHHHHHHHHHH
Confidence 8899999999999999863 332 3457666 888999997653
|
| >3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.0021 Score=54.90 Aligned_cols=104 Identities=13% Similarity=0.154 Sum_probs=77.1
Q ss_pred CCceecCChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeec-ccchhhHhhcCCCCCCeE
Q 020623 27 PDVSILNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAK-DFSEDTMVLYDFDKVPAL 97 (323)
Q Consensus 27 p~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~-~~~~~~~~~~~~~~~p~i 97 (323)
+.+..+ +.++++..+..+. +++|-|... ...+.+++.++.+.+.|+.++ +...+++.++++...|++
T Consensus 97 ~~v~~l-~~~~f~~~~~~~~---~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~ 172 (210)
T 3apq_A 97 PEIITL-ERREFDAAVNSGE---LWFVNFYSPGCSHCHDLAPTWREFAKEVDGLLRIGAVNCGDDRMLCRMKGVNSYPSL 172 (210)
T ss_dssp TTSEEC-CHHHHHHHHHHSC---CEEEEEECTTCHHHHHHHHHHHHHHHHTBTTBEEEEEETTTCHHHHHHTTCCSSSEE
T ss_pred CceEEe-cHHHHHHHHccCC---cEEEEEeCCCChhHHHHHHHHHHHHHHhcCceEEEEEECCccHHHHHHcCCCcCCeE
Confidence 346777 5788988886666 467777543 247888999988777776663 235678889999999999
Q ss_pred EEecCCCCCCccccCCCCHHHHHHHHHhhcCCCeeecC
Q 020623 98 VALQPSYNEHNIFYGPFDEEFLEEFIKQNFLPLSVPIN 135 (323)
Q Consensus 98 vv~k~~~~~~~~y~g~~~~~~L~~fI~~~~~Plv~~~t 135 (323)
++|+++ .....+.|..+.+.|.+||....-+.+.+++
T Consensus 173 ~~~~~G-~~~~~~~G~~~~~~l~~~i~~~l~~~~~~i~ 209 (210)
T 3apq_A 173 FIFRSG-MAAVKYNGDRSKESLVAFAMQHVRSTVTELS 209 (210)
T ss_dssp EEECTT-SCCEECCSCCCHHHHHHHHHHHHHCCSSCC-
T ss_pred EEEECC-CceeEecCCCCHHHHHHHHHHhCcccceecC
Confidence 999642 2334577988999999999998877777665
|
| >2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00069 Score=54.63 Aligned_cols=103 Identities=15% Similarity=0.137 Sum_probs=74.0
Q ss_pred HHHHHHHhcCCCceecCChHHHHHHHHhcCCcccEEEEecCC----------hhHHHHHHHhhcCc-eeEEeec-ccchh
Q 020623 17 LVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFGLD----------ESVMSNLALKYKKK-AWFAVAK-DFSED 84 (323)
Q Consensus 17 Iv~~l~k~~~p~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~----------~~~f~~~A~~~~~~-~~F~~~~-~~~~~ 84 (323)
+++-|... .+..+ +.+++++.+..+. +++|-|..+ ...+.++|.+|.+. +.|+.++ +-+++
T Consensus 10 l~~rl~~~---g~~~~-t~~~F~~~v~~~~---~vlVdF~a~~crCgpCk~iaPvleela~e~~g~~v~~~KVdvDe~~~ 82 (140)
T 2qgv_A 10 LWQRMLAR---GWTPV-SESRLDDWLTQAP---DGVVLLSSDPKRTPEVSDNPVMIGELLHEFPDYTWQVAIADLEQSEA 82 (140)
T ss_dssp HHHHHHHT---TCEEC-CHHHHHHHHHTCS---SEEEEECCCTTTCTTTTHHHHHHHHHHTTCTTSCCEEEECCHHHHHH
T ss_pred HHHHHHhc---CCccC-CHHHHHHHHhCCC---CEEEEEeCCcccCCcHHHHHhHHHHHHHHcCCCeEEEEEEECCCCHH
Confidence 34444443 56677 5799999886554 567766332 35789999999887 8887763 23677
Q ss_pred hHhhcCCCCCCeEEEecCCCCCCccccCCCCHHHHHHHHHhhc
Q 020623 85 TMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQNF 127 (323)
Q Consensus 85 ~~~~~~~~~~p~ivv~k~~~~~~~~y~g~~~~~~L~~fI~~~~ 127 (323)
++.+|++.+.|++++||++ +......|....+.|.+||....
T Consensus 83 lA~~ygV~sIPTlilFk~G-~~v~~~~G~~~k~~l~~~i~~~l 124 (140)
T 2qgv_A 83 IGDRFGAFRFPATLVFTGG-NYRGVLNGIHPWAELINLMRGLV 124 (140)
T ss_dssp HHHHHTCCSSSEEEEEETT-EEEEEEESCCCHHHHHHHHHHHH
T ss_pred HHHHcCCccCCEEEEEECC-EEEEEEecCCCHHHHHHHHHHHh
Confidence 8999999999999999963 22223558778889999998765
|
| >2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A | Back alignment and structure |
|---|
Probab=97.36 E-value=0.0011 Score=57.09 Aligned_cols=116 Identities=14% Similarity=0.072 Sum_probs=81.9
Q ss_pred cccccCCCCChHHHHHHHHHhcC--CCceecCChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcCce
Q 020623 4 IPTEYYGPRKAELLVRYLKKFVA--PDVSILNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKKKA 73 (323)
Q Consensus 4 ~~~eY~G~R~a~~Iv~~l~k~~~--p~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~ 73 (323)
.+..|.|.|+.+.|.+|+.+.+. ..+..+ +.+.++.++..++. ++++-|... ...+.++|..+ +.+
T Consensus 93 ~~~~~~G~~~~~~l~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~--~~~v~F~a~wC~~C~~~~~~~~~~~~~~-~~v 168 (229)
T 2ywm_A 93 YGIRYIGLPAGLEFTTLINGIFHVSQRKPQL-SEKTLELLQVVDIP--IEIWVFVTTSCGYCPSAAVMAWDFALAN-DYI 168 (229)
T ss_dssp CCEEEESCCCTTHHHHHHHHHHHHHTTCCSC-CHHHHHHHTTCCSC--EEEEEEECTTCTTHHHHHHHHHHHHHHC-TTE
T ss_pred ccceecCCccHHHHHHHHHHHHhccCCccCC-CHHHHHHHHhcCCC--eEEEEEECCCCcchHHHHHHHHHHHHHC-CCe
Confidence 35679999999999999998743 345666 56777777654442 235656542 24677888887 466
Q ss_pred eEEeecc-cchhhHhhcCCCCCCeEEEecCCCCCCccccCCCCHHHHHHHHHhhc
Q 020623 74 WFAVAKD-FSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQNF 127 (323)
Q Consensus 74 ~F~~~~~-~~~~~~~~~~~~~~p~ivv~k~~~~~~~~y~g~~~~~~L~~fI~~~~ 127 (323)
.|...+. ...+++.+|++...|++++ + ++...|.|..+.+.|.+||....
T Consensus 169 ~~~~vd~~~~~~l~~~~~v~~~Pt~~~--~--G~~~~~~G~~~~~~l~~~l~~~~ 219 (229)
T 2ywm_A 169 TSKVIDASENQDLAEQFQVVGVPKIVI--N--KGVAEFVGAQPENAFLGYIMAVY 219 (229)
T ss_dssp EEEEEEGGGCHHHHHHTTCCSSSEEEE--G--GGTEEEESCCCHHHHHHHHHHHH
T ss_pred EEEEEECCCCHHHHHHcCCcccCEEEE--C--CEEEEeeCCCCHHHHHHHHHHHh
Confidence 6665532 3567888999989999888 3 23333779889999999998653
|
| >2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A | Back alignment and structure |
|---|
Probab=97.33 E-value=0.0021 Score=51.99 Aligned_cols=111 Identities=14% Similarity=0.159 Sum_probs=70.5
Q ss_pred CCCceecCChHHHHHHHHh--cCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeec-ccchhhHhhcCCCCC
Q 020623 26 APDVSILNSDAEVSDFVEN--AGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAK-DFSEDTMVLYDFDKV 94 (323)
Q Consensus 26 ~p~v~~i~s~~~l~~fl~~--~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~-~~~~~~~~~~~~~~~ 94 (323)
...+..+++.++++++++. ++ +++|-|... ...+.+++.++. .+.|..++ +...+++.+|++...
T Consensus 11 ~~~v~~l~~~~~~~~~~~~~~~~---~vvv~F~a~wC~~C~~~~p~l~~l~~~~~-~v~~~~vd~~~~~~l~~~~~v~~~ 86 (153)
T 2wz9_A 11 VAAVEEVGSAGQFEELLRLKAKS---LLVVHFWAPWAPQCAQMNEVMAELAKELP-QVSFVKLEAEGVPEVSEKYEISSV 86 (153)
T ss_dssp -CCSEEECSHHHHHHHHHHTTTS---CEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEETTTSHHHHHHTTCCSS
T ss_pred cCCeEEcCCHHHHHHHHHhcCCC---eEEEEEECCCCHhHHHHHHHHHHHHHHcC-CeEEEEEECCCCHHHHHHcCCCCC
Confidence 3457889889999999987 44 467777543 246778888874 56665553 235678889999999
Q ss_pred CeEEEecCCCCCCccccCCCCHHHHHHHHHhhcCC-------CeeecChhhHHHh
Q 020623 95 PALVALQPSYNEHNIFYGPFDEEFLEEFIKQNFLP-------LSVPINQDTLNLL 142 (323)
Q Consensus 95 p~ivv~k~~~~~~~~y~g~~~~~~L~~fI~~~~~P-------lv~~~t~~~~~~~ 142 (323)
|++++|+++ .....+.| .+.++|.+||.+..-. .+..++..++..+
T Consensus 87 Pt~~~~~~G-~~~~~~~G-~~~~~l~~~i~~~l~~~~~~~~~~~~~l~~~~f~~~ 139 (153)
T 2wz9_A 87 PTFLFFKNS-QKIDRLDG-AHAPELTKKVQRHASSGSFLPSAKVKVDTDPNSSSV 139 (153)
T ss_dssp SEEEEEETT-EEEEEEES-SCHHHHHHHHHHHSCTTSSCSCCCCCCC--------
T ss_pred CEEEEEECC-EEEEEEeC-CCHHHHHHHHHHHhccccCCCccccccCCCCChhhH
Confidence 999999842 12223456 4778899999887532 3444455554443
|
| >2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.007 Score=47.80 Aligned_cols=120 Identities=11% Similarity=0.050 Sum_probs=77.5
Q ss_pred cCCCeeecChhhHHHhhcC---CCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCCeEEEEEcCcchhhHhhhcCCcCCCC
Q 020623 127 FLPLSVPINQDTLNLLKDD---KRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSK 203 (323)
Q Consensus 127 ~~Plv~~~t~~~~~~~~~~---~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~l~F~~vd~~~~~~~~~~~gl~~~~~ 203 (323)
....+.+++.+++...... ++++++.|... .-..-..+...|.++|++++++.|+.+|.+... +.|++ ..
T Consensus 8 ~~g~v~~i~~~~~~~~v~~~~~~~~vvv~f~a~-wC~~C~~~~p~l~~la~~~~~v~~~~vd~~~~~---~~~~i---~~ 80 (135)
T 2dbc_A 8 KFGELREISGNQYVNEVTNAEKDLWVVIHLYRS-SVPMCLVVNQHLSVLARKFPETKFVKAIVNSCI---EHYHD---NC 80 (135)
T ss_dssp CCCSCEECCHHHHHHHTTTCCSSCEEEEEECCT-TCHHHHHHHHHHHHHHHHCSSEEEEEECCSSSC---SSCCS---SC
T ss_pred CCCceEEcCHHHHHHHHHhcCCCCEEEEEEECC-CChHHHHHHHHHHHHHHHCCCcEEEEEEhhcCc---ccCCC---CC
Confidence 3456778888888875442 24666666542 123346677889999999988999999997653 67888 57
Q ss_pred CCeEEEEeCCcceeeccCCCCCC-CCCCHHHHHHHHHHHHcCcccccccCCCC
Q 020623 204 LPKMVVWDGNENYLTVIGSESID-EEDQGSQISRFLEGYREGRTEQKKVAGPS 255 (323)
Q Consensus 204 ~P~ivI~~~~~kY~~~~~~~~~~-~~~t~~~I~~Fi~~~~~Gkl~~~~kSeP~ 255 (323)
+|.++++...+......|...+. ..++.+.|.+|++.+ |-+.......|+
T Consensus 81 ~Pt~~~~~~G~~v~~~~G~~~~~~~~~~~~~l~~~l~~~--~~i~~~~~~~~~ 131 (135)
T 2dbc_A 81 LPTIFVYKNGQIEGKFIGIIECGGINLKLEELEWKLSEV--GAIQSDLEENSG 131 (135)
T ss_dssp CSEEEEESSSSCSEEEESTTTTTCTTCCHHHHHHHHHHH--TSSCCCSCCCSC
T ss_pred CCEEEEEECCEEEEEEEeEEeeCCCcCCHHHHHHHHHHc--CCccccccCCCC
Confidence 99999887432211112322221 146889999999986 455444433343
|
| >1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00091 Score=57.44 Aligned_cols=121 Identities=15% Similarity=0.180 Sum_probs=84.1
Q ss_pred CCc--ccccCCCCChHHHHHHHHHhcC--CCceecCChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhh
Q 020623 2 HGI--PTEYYGPRKAELLVRYLKKFVA--PDVSILNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKY 69 (323)
Q Consensus 2 ~G~--~~eY~G~R~a~~Iv~~l~k~~~--p~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~ 69 (323)
+|. ...|.|.+..+.+.+|+.+... .++..+ +.+.++.+...++. +++|-|... ...+.++|..+
T Consensus 87 ~g~~~~~~~~G~~~~~~l~~~l~~~l~~~~~~~~l-~~~~~~~~~~~~~~--~~~v~F~a~wC~~C~~~~p~~~~l~~~~ 163 (226)
T 1a8l_A 87 DGKDFGVRYFGLPAGHEFAAFLEDIVDVSREETNL-MDETKQAIRNIDQD--VRILVFVTPTCPYCPLAVRMAHKFAIEN 163 (226)
T ss_dssp TTBCCSEEEESCCCTTHHHHHHHHHHHHHHTCCCC-CHHHHHHHTTCCSC--EEEEEEECSSCTTHHHHHHHHHHHHHHH
T ss_pred CCceeeEEEeccCcHHHHHHHHHHHHhhcCCCCCC-CHHHHHHHHhcCCC--cEEEEEeCCCCCccHHHHHHHHHHHHhc
Confidence 454 3579999999999999988642 234445 45677666544442 226666542 24678888888
Q ss_pred c----CceeEEeecc-cchhhHhhcCCCCCCeEEEecCCCCCCccccCCCCHHHHHHHHHhh
Q 020623 70 K----KKAWFAVAKD-FSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQN 126 (323)
Q Consensus 70 ~----~~~~F~~~~~-~~~~~~~~~~~~~~p~ivv~k~~~~~~~~y~g~~~~~~L~~fI~~~ 126 (323)
. +.+.|...+. ...+++.+|++...|++++|+++ +....|.|..+.+.|.+||...
T Consensus 164 ~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G-~~~~~~~G~~~~~~l~~~l~~~ 224 (226)
T 1a8l_A 164 TKAGKGKILGDMVEAIEYPEWADQYNVMAVPKIVIQVNG-EDRVEFEGAYPEKMFLEKLLSA 224 (226)
T ss_dssp HHTTCCCEEEEEEEGGGCHHHHHHTTCCSSCEEEEEETT-EEEEEEESCCCHHHHHHHHHHH
T ss_pred ccccCCcEEEEEEEcccCHHHHHhCCCcccCeEEEEeCC-ceeEEEcCCCCHHHHHHHHHHh
Confidence 6 4676665532 35678889999999999999753 2334577988999999999865
|
| >1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A | Back alignment and structure |
|---|
Probab=97.32 E-value=0.0024 Score=47.45 Aligned_cols=94 Identities=20% Similarity=0.326 Sum_probs=66.3
Q ss_pred ceecCChHHHHHHHHh-cCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeec-ccchhhHhhcCCCCCCeEE
Q 020623 29 VSILNSDAEVSDFVEN-AGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAK-DFSEDTMVLYDFDKVPALV 98 (323)
Q Consensus 29 v~~i~s~~~l~~fl~~-~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~-~~~~~~~~~~~~~~~p~iv 98 (323)
+..|++.+++++.+++ .+. +++|-|... ...+.+++..+...+.|...+ +...+++.++++...|+++
T Consensus 2 v~~l~~~~~~~~~l~~~~~~--~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~ 79 (106)
T 1xwb_A 2 VYQVKDKADLDGQLTKASGK--LVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDIAMEYNISSMPTFV 79 (106)
T ss_dssp EEECCSHHHHHHHHHHHTTS--EEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCHHHHHHTTCCSSSEEE
T ss_pred ceecCCHHHHHHHHHhcCCC--EEEEEEECCcCHHHHHhhHHHHHHHHHhCCCeEEEEEeccchHHHHHHcCCCcccEEE
Confidence 5678888999998874 322 567777543 246788888886677676553 2356788899998999999
Q ss_pred EecCCCCCCccccCCCCHHHHHHHHHhh
Q 020623 99 ALQPSYNEHNIFYGPFDEEFLEEFIKQN 126 (323)
Q Consensus 99 v~k~~~~~~~~y~g~~~~~~L~~fI~~~ 126 (323)
+++++ .....+.| .+.+.|.+||.+.
T Consensus 80 ~~~~G-~~~~~~~g-~~~~~l~~~i~~~ 105 (106)
T 1xwb_A 80 FLKNG-VKVEEFAG-ANAKRLEDVIKAN 105 (106)
T ss_dssp EEETT-EEEEEEES-CCHHHHHHHHHHT
T ss_pred EEcCC-cEEEEEcC-CCHHHHHHHHHHh
Confidence 99742 12224567 6888899999764
|
| >3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A | Back alignment and structure |
|---|
Probab=97.32 E-value=0.0029 Score=49.87 Aligned_cols=98 Identities=8% Similarity=0.185 Sum_probs=70.7
Q ss_pred ChhhHHHhhc----CCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCCeEEEEEcCcchhhHhhhcCCcCCCCCCeEEEE
Q 020623 135 NQDTLNLLKD----DKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVW 210 (323)
Q Consensus 135 t~~~~~~~~~----~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI~ 210 (323)
+.+++..... .++++++.|... .=..-..+...|.+++++++++.|+.+|.+....+++.||+ ...|.+++.
T Consensus 31 ~~~~~~~~~~~~~~~~k~vvv~f~a~-wC~~C~~~~~~l~~l~~~~~~v~~~~v~~~~~~~~~~~~~v---~~~Pt~~~~ 106 (139)
T 3d22_A 31 TKERWDQKLSEASRDGKIVLANFSAR-WCGPSRQIAPYYIELSENYPSLMFLVIDVDELSDFSASWEI---KATPTFFFL 106 (139)
T ss_dssp SHHHHHHHHHHHHHHTCCEEEEEECT-TCHHHHHHHHHHHHHHHHCTTSEEEEEETTTSHHHHHHTTC---CEESEEEEE
T ss_pred CHHHHHHHHHHHhhcCCEEEEEEECC-CCHHHHHHHHHHHHHHHHCCCCEEEEEeCcccHHHHHHcCC---CcccEEEEE
Confidence 4566665432 357777777753 22334567788999999998899999999988888999999 578999887
Q ss_pred eCCcc--eeeccCCCCCCCCCCHHHHHHHHHHHHcCc
Q 020623 211 DGNEN--YLTVIGSESIDEEDQGSQISRFLEGYREGR 245 (323)
Q Consensus 211 ~~~~k--Y~~~~~~~~~~~~~t~~~I~~Fi~~~~~Gk 245 (323)
. +++ +.. . + .+.+.|.+|++.++.+.
T Consensus 107 ~-~G~~~~~~-~------G-~~~~~l~~~l~~~~~~~ 134 (139)
T 3d22_A 107 R-DGQQVDKL-V------G-ANKPELHKKITAILDSL 134 (139)
T ss_dssp E-TTEEEEEE-E------S-CCHHHHHHHHHHHHHTS
T ss_pred c-CCeEEEEE-e------C-CCHHHHHHHHHHHhccC
Confidence 4 442 222 1 2 26789999999998764
|
| >2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.0025 Score=49.52 Aligned_cols=97 Identities=13% Similarity=0.089 Sum_probs=68.6
Q ss_pred CceecCChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeec-ccchhhHhhcCCCCCCeEE
Q 020623 28 DVSILNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAK-DFSEDTMVLYDFDKVPALV 98 (323)
Q Consensus 28 ~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~-~~~~~~~~~~~~~~~p~iv 98 (323)
.+..++ .++++..+...+. +++|-|... ...+.+++.++.+.+.|...+ +...+++.++++...|+++
T Consensus 18 ~v~~l~-~~~f~~~~~~~~~--~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt~~ 94 (130)
T 2dml_A 18 DVIELT-PSNFNREVIQSDG--LWLVEFYAPWCGHCQRLTPEWKKAATALKDVVKVGAVNADKHQSLGGQYGVQGFPTIK 94 (130)
T ss_dssp SSEECC-TTTHHHHTTTCSS--CEEEEEECTTCSTTGGGHHHHHHHHHHTTTTSEEEEEETTTCHHHHHHHTCCSSSEEE
T ss_pred CcEECC-HHHHHHHHhcCCC--eEEEEEECCCCHHHHhhCHHHHHHHHHhcCceEEEEEeCCCCHHHHHHcCCCccCEEE
Confidence 477785 5788775543332 567777542 247888999888767776553 2356788899998999999
Q ss_pred EecCCCCCCccccCCCCHHHHHHHHHhhc
Q 020623 99 ALQPSYNEHNIFYGPFDEEFLEEFIKQNF 127 (323)
Q Consensus 99 v~k~~~~~~~~y~g~~~~~~L~~fI~~~~ 127 (323)
+|+++......|.|..+.+.|.+||.+..
T Consensus 95 ~~~~~~~~~~~~~G~~~~~~l~~~l~~~l 123 (130)
T 2dml_A 95 IFGANKNKPEDYQGGRTGEAIVDAALSAL 123 (130)
T ss_dssp EESSCTTSCEECCSCCSHHHHHHHHHHHH
T ss_pred EEeCCCCeEEEeecCCCHHHHHHHHHHHH
Confidence 99873222445779889999999998753
|
| >2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A | Back alignment and structure |
|---|
Probab=97.31 E-value=0.0015 Score=50.12 Aligned_cols=100 Identities=13% Similarity=0.204 Sum_probs=68.5
Q ss_pred CeeecCh-hhHHHhhcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCCeEEEEEcCcchhhHhhhcCCcCCCCCCeEE
Q 020623 130 LSVPINQ-DTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMV 208 (323)
Q Consensus 130 lv~~~t~-~~~~~~~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~l~F~~vd~~~~~~~~~~~gl~~~~~~P~iv 208 (323)
.+.+++. +++..+...++++++.|... .=..-..+...|.+++++++++.|+.+|.+..+.+++.||+ ...|.++
T Consensus 13 ~~~~~~~~~~~~~~~~~~k~vvv~F~a~-wC~~C~~~~p~l~~~~~~~~~v~~~~vd~~~~~~l~~~~~v---~~~Pt~~ 88 (114)
T 2oe3_A 13 SITKLTNLTEFRNLIKQNDKLVIDFYAT-WCGPCKMMQPHLTKLIQAYPDVRFVKCDVDESPDIAKECEV---TAMPTFV 88 (114)
T ss_dssp GSCBCCSHHHHHHHHHHCSEEEEEEECT-TCHHHHHTHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTC---CSBSEEE
T ss_pred heeecCCHHHHHHHHhCCCEEEEEEECC-CCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHCCC---CcccEEE
Confidence 3445554 55666666677877777653 11234566778899999998899999999888888899999 5799998
Q ss_pred EEeCCcceeeccCCCCCCCCCCHHHHHHHHHH
Q 020623 209 VWDGNENYLTVIGSESIDEEDQGSQISRFLEG 240 (323)
Q Consensus 209 I~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~~ 240 (323)
+....+......| .. .+.|.+||++
T Consensus 89 ~~~~G~~~~~~~G------~~-~~~l~~~l~~ 113 (114)
T 2oe3_A 89 LGKDGQLIGKIIG------AN-PTALEKGIKD 113 (114)
T ss_dssp EEETTEEEEEEES------SC-HHHHHHHHHT
T ss_pred EEeCCeEEEEEeC------CC-HHHHHHHHHh
Confidence 8743322111122 23 7888888864
|
| >2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.0018 Score=51.03 Aligned_cols=100 Identities=16% Similarity=0.203 Sum_probs=73.6
Q ss_pred CceecCChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcCc---eeEEeecc-cchhhHhhcCCCCCC
Q 020623 28 DVSILNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKKK---AWFAVAKD-FSEDTMVLYDFDKVP 95 (323)
Q Consensus 28 ~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~---~~F~~~~~-~~~~~~~~~~~~~~p 95 (323)
.+..+ +.++++.++..++ +++|-|... ...+.+++.++.+. +.|..++. ...+++.+|++...|
T Consensus 18 ~v~~l-~~~~~~~~~~~~~---~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P 93 (140)
T 2dj1_A 18 GVWVL-NDGNFDNFVADKD---TVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSASMLASKFDVSGYP 93 (140)
T ss_dssp TEEEC-CTTTHHHHHTTCS---EEEEEECCTTCHHHHTTHHHHHHHHHHHHSSSSCCEEEEECTTTCHHHHHHTTCCSSS
T ss_pred CCEEc-ChHhHHHHHhcCC---eEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCceEEEEEeCcccHHHHHHCCCCccC
Confidence 46778 5688998887765 467777542 24678888888764 66766532 246788899998999
Q ss_pred eEEEecCCCCCCccccCCCCHHHHHHHHHhhcCCCeee
Q 020623 96 ALVALQPSYNEHNIFYGPFDEEFLEEFIKQNFLPLSVP 133 (323)
Q Consensus 96 ~ivv~k~~~~~~~~y~g~~~~~~L~~fI~~~~~Plv~~ 133 (323)
++++|+++ +...|.|..+.+.|.+||....-|.+..
T Consensus 94 t~~~~~~G--~~~~~~g~~~~~~l~~~l~~~~~~~~~~ 129 (140)
T 2dj1_A 94 TIKILKKG--QAVDYDGSRTQEEIVAKVREVSQPDWTP 129 (140)
T ss_dssp EEEEEETT--EEEECCSCCCHHHHHHHHHHHHSSSCCC
T ss_pred eEEEEECC--cEEEcCCCCCHHHHHHHHHHhcCCCCCC
Confidence 99999753 3445778889999999999987665543
|
| >2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A | Back alignment and structure |
|---|
Probab=97.30 E-value=0.0014 Score=50.14 Aligned_cols=103 Identities=11% Similarity=0.153 Sum_probs=73.1
Q ss_pred CCeeecChhhHHHhh-cCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCC------CeEEEEEcCcchhhHhhhcCCcCC
Q 020623 129 PLSVPINQDTLNLLK-DDKRKIVLAIVEDETEEKSQKLVTTLKAAASANR------ELVFCYVGIKQFADFADTFEANKK 201 (323)
Q Consensus 129 Plv~~~t~~~~~~~~-~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~------~l~F~~vd~~~~~~~~~~~gl~~~ 201 (323)
+.+..++.+++.... ..++++++.|...- =..-..+...|.++|++++ ++.|+.+|.+..+ +.+ ++
T Consensus 7 ~~v~~l~~~~f~~~v~~~~~~vlv~f~a~w-C~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~vd~~~~~-~~~--~v--- 79 (121)
T 2djj_A 7 GPVTVVVAKNYNEIVLDDTKDVLIEFYAPW-CGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATAND-VPD--EI--- 79 (121)
T ss_dssp CSSEECCTTTTTTSSSCTTSCEEEEEECSS-CTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTTSC-CSS--CC---
T ss_pred CCeEEecccCHHHHhhcCCCCEEEEEECCC-CHhHHHhhHHHHHHHHHHhhcccCCceEEEEEECcccc-ccc--cc---
Confidence 457888999998764 56678887777531 1234567778888998875 3999999997543 334 77
Q ss_pred CCCCeEEEEeCCcc--eeeccCCCCCCCCCCHHHHHHHHHHHHcC
Q 020623 202 SKLPKMVVWDGNEN--YLTVIGSESIDEEDQGSQISRFLEGYREG 244 (323)
Q Consensus 202 ~~~P~ivI~~~~~k--Y~~~~~~~~~~~~~t~~~I~~Fi~~~~~G 244 (323)
...|.+++++.+++ .... .+..+.+.|.+||+..+..
T Consensus 80 ~~~Pt~~~~~~~~~~~~~~~------~G~~~~~~l~~~i~~~~~~ 118 (121)
T 2djj_A 80 QGFPTIKLYPAGAKGQPVTY------SGSRTVEDLIKFIAENGKY 118 (121)
T ss_dssp SSSSEEEEECSSCTTSCCCC------CCCSCHHHHHHHHHHTSSS
T ss_pred CcCCeEEEEeCcCCCCceEe------cCCCCHHHHHHHHHhccCc
Confidence 57899999987643 2222 3457889999999987653
|
| >2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A | Back alignment and structure |
|---|
Probab=97.26 E-value=0.0014 Score=52.71 Aligned_cols=102 Identities=14% Similarity=0.140 Sum_probs=61.0
Q ss_pred CceecCChHHHHHHHHhcCCcccEEEEecC-C---------hhHHHHHHHhhcCcee--EEeec-ccchhhHhhcCCCCC
Q 020623 28 DVSILNSDAEVSDFVENAGTFFPLFIGFGL-D---------ESVMSNLALKYKKKAW--FAVAK-DFSEDTMVLYDFDKV 94 (323)
Q Consensus 28 ~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~-~---------~~~f~~~A~~~~~~~~--F~~~~-~~~~~~~~~~~~~~~ 94 (323)
.+..+++ +++++++..++. ++|-|.. . ...+.++|.++ +++. |+.++ +...+++.+|++...
T Consensus 18 ~~~~l~~-~~f~~~i~~~~~---~vv~f~~~~~~C~~C~~l~P~l~~la~~~-~~v~~~~~~Vd~d~~~~la~~~~V~~i 92 (142)
T 2es7_A 18 GWQPVEA-STVDDWIKRVGD---GVILLSSDPRRTPEVSDNPVMIAELLREF-PQFDWQVAVADLEQSEAIGDRFNVRRF 92 (142)
T ss_dssp TCEECCC-C--------CCS---EEEEECCCSCC----CCHHHHHHHHHHTC-TTSCCEEEEECHHHHHHHHHTTTCCSS
T ss_pred cCccccc-ccHHHHHHhCCC---EEEEEECCCCCCccHHHHHHHHHHHHHHh-cccceeEEEEECCCCHHHHHhcCCCcC
Confidence 6778865 889999987764 4454432 1 24788999998 6777 76553 224578889999999
Q ss_pred CeEEEecCCCCCCccccCCCCHHHHHHHHHhhcCCCeeecC
Q 020623 95 PALVALQPSYNEHNIFYGPFDEEFLEEFIKQNFLPLSVPIN 135 (323)
Q Consensus 95 p~ivv~k~~~~~~~~y~g~~~~~~L~~fI~~~~~Plv~~~t 135 (323)
|++++|+++ .....+.|..+.+.|.+||....-+.....+
T Consensus 93 PT~~~fk~G-~~v~~~~G~~~~~~l~~~i~~~l~~~~~~~~ 132 (142)
T 2es7_A 93 PATLVFTDG-KLRGALSGIHPWAELLTLMRSIVDTPAAQET 132 (142)
T ss_dssp SEEEEESCC-----CEESCCCHHHHHHHHHHHHC-------
T ss_pred CeEEEEeCC-EEEEEEeCCCCHHHHHHHHHHHhcccccCCC
Confidence 999999753 2233567888899999999987765555444
|
| >1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00028 Score=55.20 Aligned_cols=102 Identities=14% Similarity=0.206 Sum_probs=66.8
Q ss_pred CeeecChhhHHH-hhcCCCcEEEEEEeCCChh--------------HHHHHHHHHHHHHHhCCC-eEEEEEcCcchhhHh
Q 020623 130 LSVPINQDTLNL-LKDDKRKIVLAIVEDETEE--------------KSQKLVTTLKAAASANRE-LVFCYVGIKQFADFA 193 (323)
Q Consensus 130 lv~~~t~~~~~~-~~~~~~~~v~~f~~~~~~e--------------~~~~~~~~l~~~A~~~~~-l~F~~vd~~~~~~~~ 193 (323)
-+..++.+++.. +...++++++.|...-- . .-..+...+.++++++++ +.|+.+|.+..+.++
T Consensus 4 ~v~~l~~~~f~~~~~~~~k~vlv~F~a~wC-~~c~~l~~~~~~~~~~C~~~~p~~~~l~~~~~~~~~~~~vd~d~~~~l~ 82 (123)
T 1oaz_A 4 KIIHLTDDSFDTDVLKADGAILVDFWAEWC-GPIEESDDRRYDLVGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTA 82 (123)
T ss_dssp SCEECCSTTHHHHTTSCSSEEEEEEECSSC-SCBSSSTTSCCSCCCCCCTTHHHHTTC-------CEEEEEETTSCTTTG
T ss_pred ccEecChhhHHHHHHhCCCeEEEEEECCCC-ccccccccccccCCCCcHHHHHHHHHHHHHhcCCeEEEEEECCCCHHHH
Confidence 366788899974 45667788777765311 1 223445577888888886 999999999887888
Q ss_pred hhcCCcCCCCCCeEEEEeCCccee-eccCCCCCCCCCCHHHHHHHHHHHH
Q 020623 194 DTFEANKKSKLPKMVVWDGNENYL-TVIGSESIDEEDQGSQISRFLEGYR 242 (323)
Q Consensus 194 ~~~gl~~~~~~P~ivI~~~~~kY~-~~~~~~~~~~~~t~~~I~~Fi~~~~ 242 (323)
+.||+ ...|.++++ .+++.. .. .+..+.+.|.+|++..+
T Consensus 83 ~~~~v---~~~Pt~~~~-~~G~~~~~~------~G~~~~~~l~~~l~~~l 122 (123)
T 1oaz_A 83 PKYGI---RGIPTLLLF-KNGEVAATK------VGALSKGQLKEFLDANL 122 (123)
T ss_dssp GGGTC---CBSSEEEEE-ESSSEEEEE------ESCCCHHHHHHHHTTTC
T ss_pred HHcCC---CccCEEEEE-ECCEEEEEE------eCCCCHHHHHHHHHHHh
Confidence 99999 579999988 444321 12 23467889999987643
|
| >1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2 | Back alignment and structure |
|---|
Probab=97.25 E-value=0.0028 Score=48.06 Aligned_cols=99 Identities=13% Similarity=0.146 Sum_probs=69.8
Q ss_pred CceecCChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcC---ceeEEeecc-cchhhHhhcCCCCCC
Q 020623 28 DVSILNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKK---KAWFAVAKD-FSEDTMVLYDFDKVP 95 (323)
Q Consensus 28 ~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~---~~~F~~~~~-~~~~~~~~~~~~~~p 95 (323)
.+..+ +.+++++.++.++ +++|-|... ...+.+++..+.. .+.|...+. ...+++.++++...|
T Consensus 8 ~v~~l-~~~~~~~~~~~~~---~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P 83 (120)
T 1mek_A 8 HVLVL-RKSNFAEALAAHK---YLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGVRGYP 83 (120)
T ss_dssp TEEEC-CTTTHHHHHHHCS---EEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTCCSSHHHHTCCSSS
T ss_pred CcEEe-chhhHHHHHccCC---eEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCcEEEEEEcCCCCHHHHHHCCCCccc
Confidence 46777 4688888887766 467766542 3578888888763 456655532 245678899998999
Q ss_pred eEEEecCCCC-CCccccCCCCHHHHHHHHHhhcCCC
Q 020623 96 ALVALQPSYN-EHNIFYGPFDEEFLEEFIKQNFLPL 130 (323)
Q Consensus 96 ~ivv~k~~~~-~~~~y~g~~~~~~L~~fI~~~~~Pl 130 (323)
++++|+++.. ....|.|..+.+.|.+||.+..-|.
T Consensus 84 t~~~~~~g~~~~~~~~~g~~~~~~l~~~l~~~~~~~ 119 (120)
T 1mek_A 84 TIKFFRNGDTASPKEYTAGREADDIVNWLKKRTGPA 119 (120)
T ss_dssp EEEEEESSCSSSCEECCCCSSHHHHHHHHHTTSCCC
T ss_pred EEEEEeCCCcCCcccccCccCHHHHHHHHHhccCCC
Confidence 9999975311 1245778889999999999876554
|
| >2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A | Back alignment and structure |
|---|
Probab=97.24 E-value=0.0014 Score=52.88 Aligned_cols=103 Identities=12% Similarity=0.154 Sum_probs=76.0
Q ss_pred CeeecChhhHHHhhcCCCcEEEEEEeCCCh---hHHHHHHHHHHHHHHhCCC--eEEEEEcCcchhhHhhhcCCcCCCCC
Q 020623 130 LSVPINQDTLNLLKDDKRKIVLAIVEDETE---EKSQKLVTTLKAAASANRE--LVFCYVGIKQFADFADTFEANKKSKL 204 (323)
Q Consensus 130 lv~~~t~~~~~~~~~~~~~~v~~f~~~~~~---e~~~~~~~~l~~~A~~~~~--l~F~~vd~~~~~~~~~~~gl~~~~~~ 204 (323)
-+..+|.++|.....++.|+++.|.. +. ..-+.+...|.++|++|.+ +.|+.+|.++.+.++..||+ ...
T Consensus 18 g~~~~t~~~F~~~v~~~~~vlVdF~a--~~crCgpCk~iaPvleela~e~~g~~v~~~KVdvDe~~~lA~~ygV---~sI 92 (140)
T 2qgv_A 18 GWTPVSESRLDDWLTQAPDGVVLLSS--DPKRTPEVSDNPVMIGELLHEFPDYTWQVAIADLEQSEAIGDRFGA---FRF 92 (140)
T ss_dssp TCEECCHHHHHHHHHTCSSEEEEECC--CTTTCTTTTHHHHHHHHHHTTCTTSCCEEEECCHHHHHHHHHHHTC---CSS
T ss_pred CCccCCHHHHHHHHhCCCCEEEEEeC--CcccCCcHHHHHhHHHHHHHHcCCCeEEEEEEECCCCHHHHHHcCC---ccC
Confidence 34588999998876666787776654 22 1112466789999999975 99999999988899999999 589
Q ss_pred CeEEEEeCCcceeeccCCCCCCCCCCHHHHHHHHHHHHc
Q 020623 205 PKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEGYRE 243 (323)
Q Consensus 205 P~ivI~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~~~~~ 243 (323)
|.++++...+.-... .+-.+.+.|.++|+.+++
T Consensus 93 PTlilFk~G~~v~~~------~G~~~k~~l~~~i~~~l~ 125 (140)
T 2qgv_A 93 PATLVFTGGNYRGVL------NGIHPWAELINLMRGLVE 125 (140)
T ss_dssp SEEEEEETTEEEEEE------ESCCCHHHHHHHHHHHHC
T ss_pred CEEEEEECCEEEEEE------ecCCCHHHHHHHHHHHhc
Confidence 999998754321111 234677899999999884
|
| >2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0017 Score=49.26 Aligned_cols=96 Identities=19% Similarity=0.236 Sum_probs=68.4
Q ss_pred CceecCChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeec-ccchhhHhhcCCCCCCeEE
Q 020623 28 DVSILNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAK-DFSEDTMVLYDFDKVPALV 98 (323)
Q Consensus 28 ~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~-~~~~~~~~~~~~~~~p~iv 98 (323)
++..++ .+++++.+ .++ +++|-|... ...+.+++.++.+.+.|...+ +.+.+++.++++...|+++
T Consensus 2 ~v~~l~-~~~~~~~~-~~~---~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~ 76 (112)
T 2voc_A 2 AIVKAT-DQSFSAET-SEG---VVLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDENQETAGKYGVMSIPTLL 76 (112)
T ss_dssp CCEECC-TTTHHHHH-SSS---EEEEEEECTTBGGGGGHHHHHHHHHHHHTTTCEEEEEETTTCCSHHHHTTCCSBSEEE
T ss_pred CeEEec-HHHHHHHh-CCC---EEEEEEECCCCHHHHHHHHHHHHHHHHhCCCcEEEEEECCCCHHHHHHcCCCcccEEE
Confidence 466774 58888878 444 567776542 246788898887777676553 2356788899998999999
Q ss_pred EecCCCCCCccccCCCCHHHHHHHHHhhcCC
Q 020623 99 ALQPSYNEHNIFYGPFDEEFLEEFIKQNFLP 129 (323)
Q Consensus 99 v~k~~~~~~~~y~g~~~~~~L~~fI~~~~~P 129 (323)
+|+++ .....+.|..+.+.|.+||..+.-|
T Consensus 77 ~~~~G-~~~~~~~G~~~~~~l~~~l~~~~~~ 106 (112)
T 2voc_A 77 VLKDG-EVVETSVGFKPKEALQELVNKHLLE 106 (112)
T ss_dssp EEETT-EEEEEEESCCCHHHHHHHHHTTSCS
T ss_pred EEeCC-EEEEEEeCCCCHHHHHHHHHHHHHh
Confidence 99542 1223467988999999999987655
|
| >3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0021 Score=48.16 Aligned_cols=95 Identities=18% Similarity=0.196 Sum_probs=66.7
Q ss_pred CCceecCChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcC---ceeEEeec-ccchhhHhhcCCCCC
Q 020623 27 PDVSILNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKK---KAWFAVAK-DFSEDTMVLYDFDKV 94 (323)
Q Consensus 27 p~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~---~~~F~~~~-~~~~~~~~~~~~~~~ 94 (323)
..+..+ +.+++++.+. ++ +++|-|... ...+.+++.++.. .+.|...+ +...+++.++++...
T Consensus 5 ~~v~~l-~~~~~~~~~~-~~---~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~ 79 (111)
T 3uvt_A 5 STVLAL-TENNFDDTIA-EG---ITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNICSKYSVRGY 79 (111)
T ss_dssp CCSEEC-CTTTHHHHHH-SS---EEEEEEECSSCHHHHHHHHHHHHHHTCCCCC-CCEEEEEEETTTCHHHHHHTTCCSS
T ss_pred CcceEc-ChhhHHHHhc-CC---cEEEEEECCCChhHHHhhHHHHHHHHHhhccCCceEEEEEeccccHhHHHhcCCCcc
Confidence 346777 5688999888 44 467776543 2467778877642 45665553 235678889999999
Q ss_pred CeEEEecCCCCCCccccCCCCHHHHHHHHHhhc
Q 020623 95 PALVALQPSYNEHNIFYGPFDEEFLEEFIKQNF 127 (323)
Q Consensus 95 p~ivv~k~~~~~~~~y~g~~~~~~L~~fI~~~~ 127 (323)
|++++|+++ .....+.|..+.+.|.+||++++
T Consensus 80 Pt~~~~~~g-~~~~~~~g~~~~~~l~~~l~~~a 111 (111)
T 3uvt_A 80 PTLLLFRGG-KKVSEHSGGRDLDSLHRFVLSQA 111 (111)
T ss_dssp SEEEEEETT-EEEEEECSCCSHHHHHHHHHHHC
T ss_pred cEEEEEeCC-cEEEeccCCcCHHHHHHHHHhcC
Confidence 999999752 22235678889999999998763
|
| >3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0019 Score=47.94 Aligned_cols=95 Identities=21% Similarity=0.300 Sum_probs=68.4
Q ss_pred CCCceecCChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeec-ccchhhHhhcCCCCCCe
Q 020623 26 APDVSILNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAK-DFSEDTMVLYDFDKVPA 96 (323)
Q Consensus 26 ~p~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~-~~~~~~~~~~~~~~~p~ 96 (323)
..++..+ +.+++++.+ .++ +++|-|+.. ...+.+++.++.+.+.|...+ +.+.+++.++++...|+
T Consensus 2 ~~~v~~l-~~~~~~~~~-~~~---~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt 76 (106)
T 3die_A 2 HMAIVKV-TDADFDSKV-ESG---VQLVDFWATACGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPT 76 (106)
T ss_dssp CCCCEEC-CTTTHHHHS-CSS---EEEEEEECSBCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSBSE
T ss_pred CcceEEC-CHHHHHHHh-cCC---cEEEEEECCCCHHHHHHhHHHHHHHHHhcCCcEEEEEECCcCHHHHHhCCCcccCE
Confidence 3567788 568888888 444 567777543 246788899988777676553 24667888999999999
Q ss_pred EEEecCCCCCCccccCCCCHHHHHHHHHhh
Q 020623 97 LVALQPSYNEHNIFYGPFDEEFLEEFIKQN 126 (323)
Q Consensus 97 ivv~k~~~~~~~~y~g~~~~~~L~~fI~~~ 126 (323)
+++++++ .....+.|..+.+.|.+||.+.
T Consensus 77 ~~~~~~G-~~~~~~~g~~~~~~l~~~l~~~ 105 (106)
T 3die_A 77 LIVFKDG-QPVDKVVGFQPKENLAEVLDKH 105 (106)
T ss_dssp EEEEETT-EEEEEEESCCCHHHHHHHHHTT
T ss_pred EEEEeCC-eEEEEEeCCCCHHHHHHHHHHh
Confidence 9999742 2223466888899999999864
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0014 Score=58.45 Aligned_cols=108 Identities=11% Similarity=0.178 Sum_probs=78.6
Q ss_pred cCCCeeecChhhHHHhhcC--CCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC-eEEEEEcCcchhhHhhhcCCcCCCC
Q 020623 127 FLPLSVPINQDTLNLLKDD--KRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSK 203 (323)
Q Consensus 127 ~~Plv~~~t~~~~~~~~~~--~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~-l~F~~vd~~~~~~~~~~~gl~~~~~ 203 (323)
..+.|..+|.+++..+... ++++++.|...- =..-..+...+.++++++++ +.|+.+|++..+.+++.||+ ..
T Consensus 5 ~~~~v~~~~~~~f~~~~~~~~~~~v~v~f~a~w-C~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v---~~ 80 (287)
T 3qou_A 5 SVENIVNINESNLQQVLEQSMTTPVLFYFWSER-SQHCLQLTPILESLAAQYNGQFILAKLDCDAEQMIAAQFGL---RA 80 (287)
T ss_dssp -CTTEEECCTTTHHHHHTTTTTSCEEEEEECTT-CTTTTTTHHHHHHHHHHHTSSSEEEEEETTTCHHHHHTTTC---CS
T ss_pred CCCccEECCHHHHHHHHHhcCCCeEEEEEECCC-ChHHHHHHHHHHHHHHHcCCCeEEEEEeCccCHHHHHHcCC---CC
Confidence 3567999999999987753 678877777521 11123455678899999988 99999999988888999999 57
Q ss_pred CCeEEEEeCCcceeeccCCCCCCCCCCHHHHHHHHHHHHcC
Q 020623 204 LPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEGYREG 244 (323)
Q Consensus 204 ~P~ivI~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~~~~~G 244 (323)
.|.++++...+.-... .+..+.+.+.+|+.....+
T Consensus 81 ~Pt~~~~~~G~~~~~~------~g~~~~~~l~~~l~~~lp~ 115 (287)
T 3qou_A 81 IPTVYLFQNGQPVDGF------QGPQPEEAIRALLDXVLPR 115 (287)
T ss_dssp SSEEEEEETTEEEEEE------ESCCCHHHHHHHHHHHSCC
T ss_pred CCeEEEEECCEEEEEe------eCCCCHHHHHHHHHHHcCC
Confidence 9999988543221111 2346788999999987643
|
| >3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C* | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0031 Score=48.33 Aligned_cols=95 Identities=17% Similarity=0.281 Sum_probs=66.6
Q ss_pred CCCceecCChHHHHHHHH--hcCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeec-ccchhhHhhcCCCCC
Q 020623 26 APDVSILNSDAEVSDFVE--NAGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAK-DFSEDTMVLYDFDKV 94 (323)
Q Consensus 26 ~p~v~~i~s~~~l~~fl~--~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~-~~~~~~~~~~~~~~~ 94 (323)
.++.....+.++++++++ .++ +++|-|... ...+.+++.++.+ +.|..++ +...+++.+|++...
T Consensus 10 ~~~~~~~~t~~~f~~~l~~~~~k---~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~-v~~~~vd~d~~~~l~~~~~v~~~ 85 (116)
T 3qfa_C 10 HGSVKQIESKTAFQEALDAAGDK---LVVVDFSATWCGPSKMIKPFFHSLSEKYSN-VIFLEVDVDDCQDVASECEVKSM 85 (116)
T ss_dssp --CCBCCCCHHHHHHHHHHHTTS---CEEEEEECTTCHHHHHHHHHHHHHHTTCTT-SEEEEEETTTTHHHHHHTTCCSS
T ss_pred CCcccCCCCHHHHHHHHHhcCCC---EEEEEEECCCCHHHHHHHHHHHHHHHHCCC-CEEEEEECCCCHHHHHHcCCccc
Confidence 344566678999999998 444 577777543 2467788888875 6665543 235678889999999
Q ss_pred CeEEEecCCCCCCccccCCCCHHHHHHHHHhh
Q 020623 95 PALVALQPSYNEHNIFYGPFDEEFLEEFIKQN 126 (323)
Q Consensus 95 p~ivv~k~~~~~~~~y~g~~~~~~L~~fI~~~ 126 (323)
|++++|+++ .....+.|. +.+.|.+||.+.
T Consensus 86 Pt~~~~~~G-~~~~~~~G~-~~~~l~~~l~~~ 115 (116)
T 3qfa_C 86 PTFQFFKKG-QKVGEFSGA-NKEKLEATINEL 115 (116)
T ss_dssp SEEEEESSS-SEEEEEESC-CHHHHHHHHHHH
T ss_pred cEEEEEeCC-eEEEEEcCC-CHHHHHHHHHHh
Confidence 999999642 222245687 899999999864
|
| >3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0039 Score=54.41 Aligned_cols=119 Identities=12% Similarity=0.073 Sum_probs=76.4
Q ss_pred CcccccCCCCChHHHHHHHHHhcCCCce---------ecCChHHHHHHHHhcCCcccEEEEecCC-hhHHHHHHHhhc--
Q 020623 3 GIPTEYYGPRKAELLVRYLKKFVAPDVS---------ILNSDAEVSDFVENAGTFFPLFIGFGLD-ESVMSNLALKYK-- 70 (323)
Q Consensus 3 G~~~eY~G~R~a~~Iv~~l~k~~~p~v~---------~i~s~~~l~~fl~~~~~~~~~vVgf~~~-~~~f~~~A~~~~-- 70 (323)
|....|.| ++.+.|.+|+.+.+..... ...+.++++.|+..+... ++.+-|.+. .....+++..+.
T Consensus 105 g~~~~~~g-~~~~~l~~~i~~~l~~~~~~~p~~~p~l~~~~~~~l~~~~~~~~~~-~~al~f~~~~~~~~~~~~~d~~~~ 182 (244)
T 3q6o_A 105 GAVFPVAG-ADVQTLRERLIDALESHHDTWPPACPPLEPAXLEEIDGFFARNNEE-YLALIFEXGGSYLAREVALDLSQH 182 (244)
T ss_dssp CEECCCTT-CCHHHHHHHHHHHHHTCTTSCCTTSCCCSCCCHHHHHTHHHHCCCS-EEEEEEECTTCCHHHHHHHHTTTC
T ss_pred CeeEecCC-CCHHHHHHHHHHHHHhccccCCCCCCCcccccHHHHHHHhhcCCCc-eEEEEEEECCcchHHHHHHHhccC
Confidence 44455666 8999999999988643321 233578899988765542 234445433 334556666665
Q ss_pred CceeEEeecccchhhHhhcCCCCCCeEEEecCCCCCCcccc-CCCCHHHHHHHHH
Q 020623 71 KKAWFAVAKDFSEDTMVLYDFDKVPALVALQPSYNEHNIFY-GPFDEEFLEEFIK 124 (323)
Q Consensus 71 ~~~~F~~~~~~~~~~~~~~~~~~~p~ivv~k~~~~~~~~y~-g~~~~~~L~~fI~ 124 (323)
..+.+..+.+.+.+++.+|++.+.|+++++.+ ++....+. ...+.+.+..+++
T Consensus 183 ~~i~v~~~~~~~~~l~~~f~v~~~Pslvl~~~-~g~~~~~~~~~~~r~~~~~~l~ 236 (244)
T 3q6o_A 183 KGVAVRRVLNTEANVVRKFGVTDFPSCYLLFR-NGSVSRVPVLMESRSFYTAYLQ 236 (244)
T ss_dssp TTEEEEEEETTCHHHHHHHTCCCSSEEEEEET-TSCEEECCCSSSSHHHHHHHHH
T ss_pred CceEEEEEeCchHHHHHHcCCCCCCeEEEEeC-CCCeEeeccccccHHHHHHHHH
Confidence 33556555444578999999999999999886 34444444 3345667777764
|
| >2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.004 Score=45.96 Aligned_cols=92 Identities=21% Similarity=0.353 Sum_probs=64.1
Q ss_pred ceecCChHHHHHHHHh--cCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeec-ccchhhHhhcCCCCCCeE
Q 020623 29 VSILNSDAEVSDFVEN--AGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAK-DFSEDTMVLYDFDKVPAL 97 (323)
Q Consensus 29 v~~i~s~~~l~~fl~~--~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~-~~~~~~~~~~~~~~~p~i 97 (323)
+..|++.+++++.+.+ +. +++|-|+.. ...+.+++.++. .+.|...+ +...+++.++++...|++
T Consensus 1 v~~i~~~~~~~~~l~~~~~~---~~~v~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~~v~~~~~~~~~~~~~v~~~Pt~ 76 (104)
T 2vim_A 1 MRVLATAADLEKLINENKGR---LIVVDFFAQWCGPCRNIAPKVEALAKEIP-EVEFAKVDVDQNEEAAAKYSVTAMPTF 76 (104)
T ss_dssp CEECCSHHHHHHHHHTTTTS---CEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEETTTCHHHHHHTTCCSSSEE
T ss_pred CeecCCHHHHHHHHHhcCCC---eEEEEEECCCCHHHHHhhHHHHHHHHHCC-CCEEEEEeccCCHHHHHHcCCccccEE
Confidence 4678888999998874 43 567766542 236778888775 56665543 235678889999899999
Q ss_pred EEecCCCCCCccccCCCCHHHHHHHHHhh
Q 020623 98 VALQPSYNEHNIFYGPFDEEFLEEFIKQN 126 (323)
Q Consensus 98 vv~k~~~~~~~~y~g~~~~~~L~~fI~~~ 126 (323)
++++++ .....+.| .+.+.|.+||.+.
T Consensus 77 ~~~~~g-~~~~~~~G-~~~~~l~~~l~~~ 103 (104)
T 2vim_A 77 VFIKDG-KEVDRFSG-ANETKLRETITRH 103 (104)
T ss_dssp EEEETT-EEEEEEES-SCHHHHHHHHHHH
T ss_pred EEEeCC-cEEEEEeC-CCHHHHHHHHHhh
Confidence 999742 12223557 5888999999864
|
| >2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0016 Score=50.32 Aligned_cols=95 Identities=15% Similarity=0.171 Sum_probs=67.1
Q ss_pred CCceecCChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcCc-eeEEeec-ccchhhHhhcCCCCCCe
Q 020623 27 PDVSILNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKKK-AWFAVAK-DFSEDTMVLYDFDKVPA 96 (323)
Q Consensus 27 p~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~-~~F~~~~-~~~~~~~~~~~~~~~p~ 96 (323)
..+..|+|.+++++.++.+. +++|-|+.. ...+.+++.++.+. +.|..++ +...+++.++++...|+
T Consensus 15 ~~~~~i~~~~~f~~~l~~~k---~vvv~f~a~~C~~C~~~~~~l~~l~~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt 91 (121)
T 2j23_A 15 GSVQVISSYDQFKQVTGGDK---VVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVDEQSQIAQEVGIRAMPT 91 (121)
T ss_dssp CCEEECCSHHHHHHHHSSSS---CEEEEEECTTCSTHHHHHHHHHHHHTSTHHHHSEEEEEETTTCHHHHHHHTCCSSSE
T ss_pred cceEEcCCHHHHHHHHcCCC---EEEEEEECCCCHhHHHHHHHHHHHHHHCcCCcEEEEEEECcCCHHHHHHcCCCcccE
Confidence 35788999999999996555 467776542 23667778777654 6665543 23567888999989999
Q ss_pred EEEecCCCCCCccccCCCCHHHHHHHHHhh
Q 020623 97 LVALQPSYNEHNIFYGPFDEEFLEEFIKQN 126 (323)
Q Consensus 97 ivv~k~~~~~~~~y~g~~~~~~L~~fI~~~ 126 (323)
+++|+++ .....+.|. +.+.|.+||.+.
T Consensus 92 ~~~~~~G-~~~~~~~G~-~~~~l~~~l~~~ 119 (121)
T 2j23_A 92 FVFFKNG-QKIDTVVGA-DPSKLQAAITQH 119 (121)
T ss_dssp EEEEETT-EEEEEEESS-CHHHHHHHHHHH
T ss_pred EEEEECC-eEEeeEcCC-CHHHHHHHHHHh
Confidence 9999642 222345687 889999999864
|
| >2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0012 Score=53.31 Aligned_cols=105 Identities=9% Similarity=0.126 Sum_probs=64.9
Q ss_pred CeeecChhhHHHhhcCCCcEEEEEEeCCC-hhHHHHHHHHHHHHHHhCCCeE--EEEEcCcchhhHhhhcCCcCCCCCCe
Q 020623 130 LSVPINQDTLNLLKDDKRKIVLAIVEDET-EEKSQKLVTTLKAAASANRELV--FCYVGIKQFADFADTFEANKKSKLPK 206 (323)
Q Consensus 130 lv~~~t~~~~~~~~~~~~~~v~~f~~~~~-~e~~~~~~~~l~~~A~~~~~l~--F~~vd~~~~~~~~~~~gl~~~~~~P~ 206 (323)
-+..++.+++..+.....+.++.|...-. -..-+.+...|.++|+++.++. |+.+|.+..+.++..||+ ..+|.
T Consensus 18 ~~~~l~~~~f~~~i~~~~~~vv~f~~~~~~C~~C~~l~P~l~~la~~~~~v~~~~~~Vd~d~~~~la~~~~V---~~iPT 94 (142)
T 2es7_A 18 GWQPVEASTVDDWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREFPQFDWQVAVADLEQSEAIGDRFNV---RRFPA 94 (142)
T ss_dssp TCEECCCC--------CCSEEEEECCCSCC----CCHHHHHHHHHHTCTTSCCEEEEECHHHHHHHHHTTTC---CSSSE
T ss_pred cCcccccccHHHHHHhCCCEEEEEECCCCCCccHHHHHHHHHHHHHHhcccceeEEEEECCCCHHHHHhcCC---CcCCe
Confidence 56788889998877655555555542100 0112346678899999993388 999999987888889999 57999
Q ss_pred EEEEeCCccee-eccCCCCCCCCCCHHHHHHHHHHHHcC
Q 020623 207 MVVWDGNENYL-TVIGSESIDEEDQGSQISRFLEGYREG 244 (323)
Q Consensus 207 ivI~~~~~kY~-~~~~~~~~~~~~t~~~I~~Fi~~~~~G 244 (323)
++++. +|+.. .. .+..+.+.|.+|++.+++.
T Consensus 95 ~~~fk-~G~~v~~~------~G~~~~~~l~~~i~~~l~~ 126 (142)
T 2es7_A 95 TLVFT-DGKLRGAL------SGIHPWAELLTLMRSIVDT 126 (142)
T ss_dssp EEEES-CC----CE------ESCCCHHHHHHHHHHHHC-
T ss_pred EEEEe-CCEEEEEE------eCCCCHHHHHHHHHHHhcc
Confidence 99984 44211 11 2346788999999998864
|
| >2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0037 Score=46.45 Aligned_cols=94 Identities=13% Similarity=0.254 Sum_probs=66.6
Q ss_pred ceecCChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeec-ccchhhHhhcCCCCCCeEEE
Q 020623 29 VSILNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAK-DFSEDTMVLYDFDKVPALVA 99 (323)
Q Consensus 29 v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~-~~~~~~~~~~~~~~~p~ivv 99 (323)
+..++ .++++.+++.++ +++|-|... ...+.+++..+.+++.|...+ +.+.+++.++++...|++++
T Consensus 3 v~~l~-~~~~~~~~~~~~---~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~ 78 (109)
T 2yzu_A 3 PIEVT-DQNFDETLGQHP---LVLVDFWAEWCAPCRMIAPILEEIAKEYEGKLLVAKLDVDENPKTAMRYRVMSIPTVIL 78 (109)
T ss_dssp CEECC-TTTHHHHHHHCS---EEEEEEECTTCHHHHHHHHHHHHHHHHTBTTBEEEEEETTTCHHHHHHTTCCSSSEEEE
T ss_pred ceEcc-HhHHHHHhcCCC---eEEEEEECCCCHHHHHhhHHHHHHHHHhhCceEEEEEECCCCHhHHHhCCCCcCCEEEE
Confidence 45674 578888787766 467766543 246788888887667666553 23567888999989999999
Q ss_pred ecCCCCCCccccCCCCHHHHHHHHHhhc
Q 020623 100 LQPSYNEHNIFYGPFDEEFLEEFIKQNF 127 (323)
Q Consensus 100 ~k~~~~~~~~y~g~~~~~~L~~fI~~~~ 127 (323)
|+++ .....+.|..+.+.|.+||.+..
T Consensus 79 ~~~g-~~~~~~~g~~~~~~l~~~l~~~l 105 (109)
T 2yzu_A 79 FKDG-QPVEVLVGAQPKRNYQAKIEKHL 105 (109)
T ss_dssp EETT-EEEEEEESCCCHHHHHHHHHTTC
T ss_pred EeCC-cEeeeEeCCCCHHHHHHHHHHHh
Confidence 9542 12224678888999999998653
|
| >1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0047 Score=46.73 Aligned_cols=95 Identities=15% Similarity=0.263 Sum_probs=65.9
Q ss_pred CCCceecCChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeec-ccchhhHhhcCCCCCCe
Q 020623 26 APDVSILNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAK-DFSEDTMVLYDFDKVPA 96 (323)
Q Consensus 26 ~p~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~-~~~~~~~~~~~~~~~p~ 96 (323)
.|+.....+.+++++.++.++ +++|-|+.. ...+.+++.++. ++.|...+ +...+++.++++...|+
T Consensus 7 ~~~~~~~~~~~~f~~~~~~~k---~vlv~f~a~~C~~C~~~~~~l~~l~~~~~-~v~~~~vd~~~~~~~~~~~~v~~~Pt 82 (112)
T 1syr_A 7 HHMVKIVTSQAEFDSIISQNE---LVIVDFFAEWCGPCKRIAPFYEECSKTYT-KMVFIKVDVDEVSEVTEKENITSMPT 82 (112)
T ss_dssp --CCEEECSHHHHHHHHHHCS---EEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEETTTTHHHHHHTTCCSSSE
T ss_pred ceeEEEECCHHHHHHHHccCC---eEEEEEECCCCHHHHHHHHHHHHHHHHcC-CCEEEEEECCCCHHHHHHcCCCcccE
Confidence 455566668899999998766 467776543 246778888876 46565543 23566888999989999
Q ss_pred EEEecCCCCCCccccCCCCHHHHHHHHHhh
Q 020623 97 LVALQPSYNEHNIFYGPFDEEFLEEFIKQN 126 (323)
Q Consensus 97 ivv~k~~~~~~~~y~g~~~~~~L~~fI~~~ 126 (323)
+++++++ .....+.|. +.+.|.+||...
T Consensus 83 ~~~~~~G-~~~~~~~G~-~~~~l~~~l~~~ 110 (112)
T 1syr_A 83 FKVYKNG-SSVDTLLGA-NDSALKQLIEKY 110 (112)
T ss_dssp EEEEETT-EEEEEEESC-CHHHHHHHHHTT
T ss_pred EEEEECC-cEEEEEeCC-CHHHHHHHHHHh
Confidence 9999742 122245687 899999999764
|
| >1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0036 Score=47.17 Aligned_cols=98 Identities=20% Similarity=0.260 Sum_probs=67.3
Q ss_pred cCCCceecCChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeec-ccchhhHhhcCCCCCC
Q 020623 25 VAPDVSILNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAK-DFSEDTMVLYDFDKVP 95 (323)
Q Consensus 25 ~~p~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~-~~~~~~~~~~~~~~~p 95 (323)
+...+..+ +.++++..+...+. +++|.|... ...+.+++..+.+.+.|...+ +...+++.++++...|
T Consensus 5 ~~~~v~~l-~~~~~~~~~~~~~~--~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~~~P 81 (115)
T 1thx_A 5 MSKGVITI-TDAEFESEVLKAEQ--PVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNPTTVKKYKVEGVP 81 (115)
T ss_dssp -CCSEEEC-CGGGHHHHTTTCSS--CEEEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEEEEESTTCHHHHHHTTCCSSS
T ss_pred ccCceEEe-eccchhhHhhcCCc--eEEEEEECCCCHHHHHhHHHHHHHHHHhCCcEEEEEEEcCCCHHHHHHcCCCcee
Confidence 34558888 56888876533332 467777542 246788898887667776553 2356788899998999
Q ss_pred eEEEecCCCCCCccccCCCCHHHHHHHHHhh
Q 020623 96 ALVALQPSYNEHNIFYGPFDEEFLEEFIKQN 126 (323)
Q Consensus 96 ~ivv~k~~~~~~~~y~g~~~~~~L~~fI~~~ 126 (323)
++++|+++ .....+.|..+.+.|.+||.+.
T Consensus 82 t~~~~~~G-~~~~~~~g~~~~~~l~~~l~~~ 111 (115)
T 1thx_A 82 ALRLVKGE-QILDSTEGVISKDKLLSFLDTH 111 (115)
T ss_dssp EEEEEETT-EEEEEEESCCCHHHHHHHHHHH
T ss_pred EEEEEcCC-EEEEEecCCCCHHHHHHHHHHH
Confidence 99999542 1222466888899999999865
|
| >1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0043 Score=48.39 Aligned_cols=92 Identities=13% Similarity=0.149 Sum_probs=65.9
Q ss_pred ceecCChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeec-ccchhhHhhcCCCCCCeEEE
Q 020623 29 VSILNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAK-DFSEDTMVLYDFDKVPALVA 99 (323)
Q Consensus 29 v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~-~~~~~~~~~~~~~~~p~ivv 99 (323)
+..|++.+++++.++.+. +++|-|... ...+.+++..+. ++.|..++ +...+++.+|++...|++++
T Consensus 21 v~~l~~~~~f~~~~~~~k---~vvv~F~a~wC~~C~~~~p~l~~l~~~~~-~v~~~~vd~d~~~~l~~~~~v~~~Pt~~i 96 (125)
T 1r26_A 21 VVDVYSVEQFRNIMSEDI---LTVAWFTAVWCGPCKTIERPMEKIAYEFP-TVKFAKVDADNNSEIVSKCRVLQLPTFII 96 (125)
T ss_dssp CEEECCHHHHHHHHHSSS---CEEEEEECTTCHHHHHTHHHHHHHHHHCT-TSEEEEEETTTCHHHHHHTTCCSSSEEEE
T ss_pred eEECCCHHHHHHHHccCC---EEEEEEECCcCHhHHHHHHHHHHHHHHCC-CCEEEEEECCCCHHHHHHcCCCcccEEEE
Confidence 788988899999886655 467777543 246788888874 56665553 23567888999999999999
Q ss_pred ecCCCCCCccccCCCCHHHHHHHHHhh
Q 020623 100 LQPSYNEHNIFYGPFDEEFLEEFIKQN 126 (323)
Q Consensus 100 ~k~~~~~~~~y~g~~~~~~L~~fI~~~ 126 (323)
|+++ .....+.| .+.+.|.+||...
T Consensus 97 ~~~G-~~~~~~~G-~~~~~l~~~l~~~ 121 (125)
T 1r26_A 97 ARSG-KMLGHVIG-ANPGMLRQKLRDI 121 (125)
T ss_dssp EETT-EEEEEEES-SCHHHHHHHHHHH
T ss_pred EeCC-eEEEEEeC-CCHHHHHHHHHHH
Confidence 9642 12224567 5788999999764
|
| >1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A | Back alignment and structure |
|---|
Probab=97.07 E-value=0.003 Score=49.00 Aligned_cols=103 Identities=10% Similarity=0.147 Sum_probs=71.1
Q ss_pred CCCeeecChhhHHHhhcC--CCcEEEEEEeCC------ChhHHHHHHHHHHHHHHhCCC-eEEEEEcC-------cchhh
Q 020623 128 LPLSVPINQDTLNLLKDD--KRKIVLAIVEDE------TEEKSQKLVTTLKAAASANRE-LVFCYVGI-------KQFAD 191 (323)
Q Consensus 128 ~Plv~~~t~~~~~~~~~~--~~~~v~~f~~~~------~~e~~~~~~~~l~~~A~~~~~-l~F~~vd~-------~~~~~ 191 (323)
++.+...+.+++...... ++++++.|.... -=..-..+...|.++++++++ +.|+.+|. +....
T Consensus 4 ~~~v~~~~~~~~~~~~~~~~~~~v~v~F~a~~~~~~~~wC~~C~~~~p~l~~~~~~~~~~~~~~~vd~~~~~~~~d~~~~ 83 (123)
T 1wou_A 4 YEEVSVSGFEEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEGCVFIYCQVGEKPYWKDPNND 83 (123)
T ss_dssp CEEEEEESHHHHHHHHHTTTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCTTEEEEEEECCCHHHHHCTTCH
T ss_pred ceeEEeccHHHHHHHHHHhCCCEEEEEEEccCCCCCCCcCHHHHHhhHHHHHHHHHcCCCcEEEEEECCCchhhhchhHH
Confidence 345666777888776554 678877777630 012235677889999999986 99999999 55566
Q ss_pred HhhhcCCcCCCCCCeEEEEeCCcceeeccCCCCCCCCCCHHHHHHHHHH
Q 020623 192 FADTFEANKKSKLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEG 240 (323)
Q Consensus 192 ~~~~~gl~~~~~~P~ivI~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~~ 240 (323)
+.+.|++ ...|.+++++..++..-. ...+.+.|.+|+++
T Consensus 84 ~~~~~~i---~~~Pt~~~~~~~~~~~g~-------~~~~~~~l~~~i~~ 122 (123)
T 1wou_A 84 FRKNLKV---TAVPTLLKYGTPQKLVES-------ECLQANLVEMLFSE 122 (123)
T ss_dssp HHHHHCC---CSSSEEEETTSSCEEEGG-------GGGCHHHHHHHHHC
T ss_pred HHHHCCC---CeeCEEEEEcCCceEecc-------ccCCHHHHHHHHhc
Confidence 7788999 579999998764333211 12467889988863
|
| >3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0053 Score=48.40 Aligned_cols=104 Identities=11% Similarity=-0.003 Sum_probs=73.1
Q ss_pred CeeecChhhHHHhhcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCCeEEEEEcC---------cchhhHhhhcCCcC
Q 020623 130 LSVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGI---------KQFADFADTFEANK 200 (323)
Q Consensus 130 lv~~~t~~~~~~~~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~l~F~~vd~---------~~~~~~~~~~gl~~ 200 (323)
.+.+++.+++...... ++++.|... .=..-..+...|.+++++++ +.|+.+|. +..+.+++.||+
T Consensus 17 ~v~~l~~~~~~~~~~~--~vlv~F~a~-wC~~C~~~~p~l~~l~~~~~-v~~~~vd~~~~~~~~~~d~~~~l~~~~~v-- 90 (135)
T 3emx_A 17 RLIYITPEEFRQLLQG--DAILAVYSK-TCPHCHRDWPQLIQASKEVD-VPIVMFIWGSLIGERELSAARLEMNKAGV-- 90 (135)
T ss_dssp EEEECCHHHHHHHHTS--SEEEEEEET-TCHHHHHHHHHHHHHHTTCC-SCEEEEEECTTCCHHHHHHHHHHHHHHTC--
T ss_pred ceeecCHHHHHHHhCC--cEEEEEECC-cCHhhhHhChhHHHHHHHCC-CEEEEEECCCchhhhhhhhhHHHHHHcCC--
Confidence 3667788888877655 777777663 12334567788999999998 99999998 666678889999
Q ss_pred CCCCCeEEEEeCCcceeeccCCCCCCCCCCHHHHHHHHHHHHcCcc
Q 020623 201 KSKLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEGYREGRT 246 (323)
Q Consensus 201 ~~~~P~ivI~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~~~~~Gkl 246 (323)
...|.+++++..+..... .+..+.+.+.++++..+++.-
T Consensus 91 -~~~Pt~~~~~~G~~v~~~------~G~~~~~~~~~~i~~~~~~~~ 129 (135)
T 3emx_A 91 -EGTPTLVFYKEGRIVDKL------VGATPWSLKVEKAREIYGGEG 129 (135)
T ss_dssp -CSSSEEEEEETTEEEEEE------ESCCCHHHHHHHHHHHC----
T ss_pred -ceeCeEEEEcCCEEEEEE------eCCCCHHHHHHHHHHHhCCCc
Confidence 579999998843322222 234678999999999987643
|
| >3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0034 Score=50.18 Aligned_cols=95 Identities=9% Similarity=0.259 Sum_probs=69.2
Q ss_pred CceecCChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeec-ccchhhHhhcCCCCCCeEE
Q 020623 28 DVSILNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAK-DFSEDTMVLYDFDKVPALV 98 (323)
Q Consensus 28 ~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~-~~~~~~~~~~~~~~~p~iv 98 (323)
.+..++ .++++..+..++ +++|-|... ...+.+++..+.+++.|..++ +...+++.+|++...|+++
T Consensus 39 ~v~~l~-~~~~~~~~~~~k---~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt~~ 114 (148)
T 3p2a_A 39 EVINAT-AETLDKLLQDDL---PMVIDFWAPWCGPCRSFAPIFAETAAERAGKVRFVKVNTEAEPALSTRFRIRSIPTIM 114 (148)
T ss_dssp CCEECC-TTTHHHHTTCSS---CEEEEEECSSCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSSEEE
T ss_pred CceecC-HHHHHHHHhcCC---cEEEEEECCCCHHHHHHHHHHHHHHHHcCCceEEEEEECcCCHHHHHHCCCCccCEEE
Confidence 466774 588888885555 577777543 247788999987777776553 3466788899999999999
Q ss_pred EecCCCCCCccccCCCCHHHHHHHHHhhc
Q 020623 99 ALQPSYNEHNIFYGPFDEEFLEEFIKQNF 127 (323)
Q Consensus 99 v~k~~~~~~~~y~g~~~~~~L~~fI~~~~ 127 (323)
+|+++ .....|.|..+.+.|.+||.+..
T Consensus 115 ~~~~G-~~~~~~~G~~~~~~l~~~l~~~l 142 (148)
T 3p2a_A 115 LYRNG-KMIDMLNGAVPKAPFDNWLDEQL 142 (148)
T ss_dssp EEETT-EEEEEESSCCCHHHHHHHHHHHH
T ss_pred EEECC-eEEEEEeCCCCHHHHHHHHHHHh
Confidence 99742 22234678889999999998753
|
| >2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0043 Score=54.57 Aligned_cols=103 Identities=15% Similarity=0.251 Sum_probs=72.9
Q ss_pred CCeeecChhhHHHhhcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCC---CeEEEEEcCc-----chhhHhhhcCCcC
Q 020623 129 PLSVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANR---ELVFCYVGIK-----QFADFADTFEANK 200 (323)
Q Consensus 129 Plv~~~t~~~~~~~~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~---~l~F~~vd~~-----~~~~~~~~~gl~~ 200 (323)
..|..+|..||..+...++++++.|+.....= . +...+.++|+.+. ++.|+.+|++ ..+.+++.||+ .
T Consensus 5 ~~v~~Lt~~nF~~~i~~~~~vlV~FyA~~pWC--g-l~P~~e~lA~~~~~~~~v~~akVDvd~~g~~~~~~l~~~~~V-~ 80 (240)
T 2qc7_A 5 KGALPLDTVTFYKVIPKSKFVLVKFDTQYPYG--E-KQDEFKRLAENSASSDDLLVAEVGISDYGDKLNMELSEKYKL-D 80 (240)
T ss_dssp TTCEECCTTHHHHHGGGCSEEEEEECCSSCCS--H-HHHHHHHHHHHHTTCTTEEEEEECCCCSSSCCSHHHHHHTTC-C
T ss_pred CCceECCHHHHHHHHcCCCCEEEEEeCCCCCC--c-chHHHHHHHHHhcCCCCeEEEEEeCCcccchhhHHHHHHcCC-C
Confidence 45788999999987766677766665400111 1 6778889999875 3999999954 36788999999 3
Q ss_pred CCCCCeEEEEeCCc--ceeeccCCCCCCCCCCHHHHHHHHHHH
Q 020623 201 KSKLPKMVVWDGNE--NYLTVIGSESIDEEDQGSQISRFLEGY 241 (323)
Q Consensus 201 ~~~~P~ivI~~~~~--kY~~~~~~~~~~~~~t~~~I~~Fi~~~ 241 (323)
...+|.++++.... ..... .+..+.+.|.+||+..
T Consensus 81 ~~~~PTl~~f~~G~~~~~~~y------~G~~~~~~L~~fi~~~ 117 (240)
T 2qc7_A 81 KESYPVFYLFRDGDFENPVPY------TGAVKVGAIQRWLKGQ 117 (240)
T ss_dssp GGGCSEEEEEETTCSSCCEEC------CSCSCHHHHHHHHHHT
T ss_pred CCCCCEEEEEeCCCcCcceee------cCCCCHHHHHHHHHHh
Confidence 22899999886532 11122 2456889999999987
|
| >2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0036 Score=47.89 Aligned_cols=92 Identities=20% Similarity=0.244 Sum_probs=66.3
Q ss_pred CceecCChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeec-ccchhhHhhcCCCCCCeEE
Q 020623 28 DVSILNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAK-DFSEDTMVLYDFDKVPALV 98 (323)
Q Consensus 28 ~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~-~~~~~~~~~~~~~~~p~iv 98 (323)
.+..+++.+.+++.++.++ +++|-|... ...+.+++.++.+ +.|...+ +...+++.++++...|+++
T Consensus 13 ~~~~~~~~~~~~~~~~~~k---~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~-v~~~~vd~~~~~~l~~~~~v~~~Pt~~ 88 (114)
T 2oe3_A 13 SITKLTNLTEFRNLIKQND---KLVIDFYATWCGPCKMMQPHLTKLIQAYPD-VRFVKCDVDESPDIAKECEVTAMPTFV 88 (114)
T ss_dssp GSCBCCSHHHHHHHHHHCS---EEEEEEECTTCHHHHHTHHHHHHHHHHCTT-SEEEEEETTTCHHHHHHTTCCSBSEEE
T ss_pred heeecCCHHHHHHHHhCCC---EEEEEEECCCCHHHHHHHHHHHHHHHHCCC-CEEEEEECCCCHHHHHHCCCCcccEEE
Confidence 3678899999999988776 467777542 2467888888875 6665543 2356788899998999999
Q ss_pred EecCCCCCCccccCCCCHHHHHHHHHh
Q 020623 99 ALQPSYNEHNIFYGPFDEEFLEEFIKQ 125 (323)
Q Consensus 99 v~k~~~~~~~~y~g~~~~~~L~~fI~~ 125 (323)
+++++ .....+.|.. .+.|.+||++
T Consensus 89 ~~~~G-~~~~~~~G~~-~~~l~~~l~~ 113 (114)
T 2oe3_A 89 LGKDG-QLIGKIIGAN-PTALEKGIKD 113 (114)
T ss_dssp EEETT-EEEEEEESSC-HHHHHHHHHT
T ss_pred EEeCC-eEEEEEeCCC-HHHHHHHHHh
Confidence 98642 1222466876 8899999975
|
| >2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0041 Score=46.17 Aligned_cols=95 Identities=14% Similarity=0.235 Sum_probs=65.1
Q ss_pred CceecCChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeec-ccchhhHhhcCCCCCCeEE
Q 020623 28 DVSILNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAK-DFSEDTMVLYDFDKVPALV 98 (323)
Q Consensus 28 ~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~-~~~~~~~~~~~~~~~p~iv 98 (323)
.+..++ .++++..+...+. +++|-|... ...+.+++.++.+++.|...+ +...+++.++++...|+++
T Consensus 3 ~v~~l~-~~~~~~~~~~~~~--~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~ 79 (107)
T 2i4a_A 3 HTLAVS-DSSFDQDVLKASG--LVLVDFWAEWCGPCKMIGPALGEIGKEFAGKVTVAKVNIDDNPETPNAYQVRSIPTLM 79 (107)
T ss_dssp CEEECC-TTTHHHHTTTCSS--EEEEEEECTTCHHHHHHHHHHHHHHHHHTTSEEEEEEETTTCCHHHHHTTCCSSSEEE
T ss_pred ceeecc-hhhhhHHHHhCCC--EEEEEEECCCChhHHHHhHHHHHHHHHhCCcEEEEEEECCCCHHHHHhcCCCccCEEE
Confidence 466774 5777765533332 567777543 236778888887777776653 2356788899998999999
Q ss_pred EecCCCCCCccccCCCCHHHHHHHHHhh
Q 020623 99 ALQPSYNEHNIFYGPFDEEFLEEFIKQN 126 (323)
Q Consensus 99 v~k~~~~~~~~y~g~~~~~~L~~fI~~~ 126 (323)
+|+++ .....+.|..+.+.|.+||.+.
T Consensus 80 ~~~~G-~~~~~~~G~~~~~~l~~~l~~~ 106 (107)
T 2i4a_A 80 LVRDG-KVIDKKVGALPKSQLKAWVESA 106 (107)
T ss_dssp EEETT-EEEEEEESCCCHHHHHHHHHHT
T ss_pred EEeCC-EEEEEecCCCCHHHHHHHHHhc
Confidence 99542 1222466888899999999875
|
| >1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0054 Score=45.83 Aligned_cols=94 Identities=20% Similarity=0.270 Sum_probs=64.6
Q ss_pred CceecCChHHHHHHHHh-cCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeec-ccchhhHhhcCCCCCCeE
Q 020623 28 DVSILNSDAEVSDFVEN-AGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAK-DFSEDTMVLYDFDKVPAL 97 (323)
Q Consensus 28 ~v~~i~s~~~l~~fl~~-~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~-~~~~~~~~~~~~~~~p~i 97 (323)
++..|.+.+++++.+.+ .+. +++|-|... ...+.+++.++. ++.|...+ +...+++.++++...|++
T Consensus 2 ~v~~i~~~~~~~~~~~~~~~~--~v~v~f~a~wC~~C~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~Pt~ 78 (107)
T 1gh2_A 2 GVKPVGSDPDFQPELSGAGSR--LAVVKFTMRGCGPCLRIAPAFSSMSNKYP-QAVFLEVDVHQCQGTAATNNISATPTF 78 (107)
T ss_dssp CEEEECSGGGHHHHHHHTTTS--CEEEEEECSSCHHHHHHHHHHHHHHHHCT-TSEEEEEETTTSHHHHHHTTCCSSSEE
T ss_pred ceEEecCHHHHHHHHHhCCCC--EEEEEEECCCChhhHHHHHHHHHHHHHCC-CcEEEEEECccCHHHHHhcCCCcccEE
Confidence 46788899999998854 222 567777543 246788888884 56665553 235678889999899999
Q ss_pred EEecCCCCCCccccCCCCHHHHHHHHHhh
Q 020623 98 VALQPSYNEHNIFYGPFDEEFLEEFIKQN 126 (323)
Q Consensus 98 vv~k~~~~~~~~y~g~~~~~~L~~fI~~~ 126 (323)
++|+++ .....+.|. ..++|.+||.+.
T Consensus 79 ~~~~~G-~~~~~~~G~-~~~~l~~~l~~~ 105 (107)
T 1gh2_A 79 QFFRNK-VRIDQYQGA-DAVGLEEKIKQH 105 (107)
T ss_dssp EEEETT-EEEEEEESS-CHHHHHHHHHHH
T ss_pred EEEECC-eEEEEEeCC-CHHHHHHHHHHh
Confidence 999752 222245674 455699999864
|
| >2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0029 Score=50.74 Aligned_cols=95 Identities=18% Similarity=0.242 Sum_probs=70.6
Q ss_pred ceecCChHHHHHHHHhcCCcccEEEEecCC----------hhHHHHHHHhhcCceeEEeec-ccchhhHhhcCCCCCCeE
Q 020623 29 VSILNSDAEVSDFVENAGTFFPLFIGFGLD----------ESVMSNLALKYKKKAWFAVAK-DFSEDTMVLYDFDKVPAL 97 (323)
Q Consensus 29 v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~----------~~~f~~~A~~~~~~~~F~~~~-~~~~~~~~~~~~~~~p~i 97 (323)
...|+ .+++++++...+. +++|-|..+ ...+.++|.+|.+.+.|+.++ +-+++++.+|++...|++
T Consensus 17 ~~~vt-~~~F~~~v~~~~~--~vlVdF~A~wCr~gpCk~iaPvleela~e~~~~v~~~KVdvDe~~~la~~ygV~siPTl 93 (137)
T 2qsi_A 17 PTLVD-EATVDDFIAHSGK--IVVLFFRGDAVRFPEAADLAVVLPELINAFPGRLVAAEVAAEAERGLMARFGVAVCPSL 93 (137)
T ss_dssp CEEEC-TTTHHHHHHTSSS--EEEEEECCCTTTCTTHHHHHHHHHHHHHTSTTTEEEEEECGGGHHHHHHHHTCCSSSEE
T ss_pred CcccC-HhHHHHHHhcCCC--cEEEEEeCCccCCCchhhHHhHHHHHHHHccCCcEEEEEECCCCHHHHHHcCCccCCEE
Confidence 34674 5889888876653 578877541 247889999998888887764 346778899999999999
Q ss_pred EEecCCCCCCccccCCCCHHHHHHHHHhhc
Q 020623 98 VALQPSYNEHNIFYGPFDEEFLEEFIKQNF 127 (323)
Q Consensus 98 vv~k~~~~~~~~y~g~~~~~~L~~fI~~~~ 127 (323)
++||++ +......|....+.|.+||..+.
T Consensus 94 ilFkdG-~~v~~~vG~~~k~~l~~~l~~~l 122 (137)
T 2qsi_A 94 AVVQPE-RTLGVIAKIQDWSSYLAQIGAML 122 (137)
T ss_dssp EEEECC-EEEEEEESCCCHHHHHHHHHHHH
T ss_pred EEEECC-EEEEEEeCCCCHHHHHHHHHHHh
Confidence 999963 22223458778889999998664
|
| >3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0084 Score=47.17 Aligned_cols=98 Identities=16% Similarity=0.300 Sum_probs=69.5
Q ss_pred CCCceecCChHHHHHHHHh-----------cCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeec-ccchhh
Q 020623 26 APDVSILNSDAEVSDFVEN-----------AGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAK-DFSEDT 85 (323)
Q Consensus 26 ~p~v~~i~s~~~l~~fl~~-----------~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~-~~~~~~ 85 (323)
.+.+..+ +.++++..+.+ .+. +++|-|... ...+.+++..+.+.+.|..++ +...++
T Consensus 21 ~~~v~~l-~~~~f~~~l~~~~~~~~~l~~~~~k--~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 97 (141)
T 3hxs_A 21 QSGTIHL-TRAEFLKKIADYENHSKEWKYLGDK--PAIVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDKEPEL 97 (141)
T ss_dssp --CCEEC-CHHHHHHHTCCCSSCCCCCCCCCSS--CEEEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHH
T ss_pred CCCcccc-cHHHHHHHhhccccchhHHHHhCCC--EEEEEEECCCCHHHHHHHHHHHHHHHHhcCceEEEEEECCCCHHH
Confidence 3457778 57888877765 122 577777542 247788999988777665553 235678
Q ss_pred HhhcCCCCCCeEEEecCCCCCCccccCCCCHHHHHHHHHhhc
Q 020623 86 MVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQNF 127 (323)
Q Consensus 86 ~~~~~~~~~p~ivv~k~~~~~~~~y~g~~~~~~L~~fI~~~~ 127 (323)
+.+|++...|++++|.+ .+....+.|..+.+.|.+||....
T Consensus 98 ~~~~~v~~~Pt~~~~~~-~g~~~~~~G~~~~~~l~~~l~~~l 138 (141)
T 3hxs_A 98 ARDFGIQSIPTIWFVPM-KGEPQVNMGALSKEQLKGYIDKVL 138 (141)
T ss_dssp HHHTTCCSSSEEEEECS-SSCCEEEESCCCHHHHHHHHHHTT
T ss_pred HHHcCCCCcCEEEEEeC-CCCEEEEeCCCCHHHHHHHHHHHH
Confidence 89999999999999965 233346679889999999998753
|
| >1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0074 Score=44.86 Aligned_cols=95 Identities=15% Similarity=0.300 Sum_probs=65.5
Q ss_pred CceecCChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeec-ccchhhHhhcCCCCCCeEE
Q 020623 28 DVSILNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAK-DFSEDTMVLYDFDKVPALV 98 (323)
Q Consensus 28 ~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~-~~~~~~~~~~~~~~~p~iv 98 (323)
+|..+ +.+++++.+...+. +++|-|... ...+.+++.++.+.+.|...+ +.+.+++.++++...|+++
T Consensus 2 ~v~~l-~~~~~~~~~~~~~~--~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~ 78 (107)
T 1dby_A 2 EAGAV-NDDTFKNVVLESSV--PVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNVASEYGIRSIPTIM 78 (107)
T ss_dssp CCEEE-CHHHHHHHTTTCSS--CEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHHTCCSSCEEE
T ss_pred ccEec-cHHHHHHHHhcCCC--cEEEEEECCCCHhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCCcCCEEE
Confidence 45667 46788776644433 567777543 246778888887767666553 2356788899998999999
Q ss_pred EecCCCCCCccccCCCCHHHHHHHHHhh
Q 020623 99 ALQPSYNEHNIFYGPFDEEFLEEFIKQN 126 (323)
Q Consensus 99 v~k~~~~~~~~y~g~~~~~~L~~fI~~~ 126 (323)
+++++ .....+.|..+.+.|.+||.+.
T Consensus 79 ~~~~G-~~~~~~~G~~~~~~l~~~l~~~ 105 (107)
T 1dby_A 79 VFKGG-KKCETIIGAVPKATIVQTVEKY 105 (107)
T ss_dssp EESSS-SEEEEEESCCCHHHHHHHHHHH
T ss_pred EEeCC-EEEEEEeCCCCHHHHHHHHHHH
Confidence 99642 1222456888889999999864
|
| >2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0064 Score=44.60 Aligned_cols=92 Identities=18% Similarity=0.266 Sum_probs=64.4
Q ss_pred ceecCChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeec-ccchhhHhhcCCCCCCeEEE
Q 020623 29 VSILNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAK-DFSEDTMVLYDFDKVPALVA 99 (323)
Q Consensus 29 v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~-~~~~~~~~~~~~~~~p~ivv 99 (323)
|..+ +.+++++.++.++ +++|-|... ...+.+++..+.+ +.|...+ +...+++.++++...|++++
T Consensus 1 V~~l-~~~~~~~~~~~~~---~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~v~~~Pt~~~ 75 (104)
T 2e0q_A 1 VIHL-DSKNFDSFLASHE---IAVVDFWAEWCAPCLILAPIIEELAEDYPQ-VGFGKLNSDENPDIAARYGVMSLPTVIF 75 (104)
T ss_dssp CEEC-CTTTHHHHHHHSS---EEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEETTTCHHHHHHTTCCSSCEEEE
T ss_pred Ceec-CHHHHHHHHhcCC---cEEEEEECCCChhHHHHhHHHHHHHHHcCC-ceEEEEECCCCHHHHHhCCccccCEEEE
Confidence 3456 4578888887666 467776543 2367788888876 6665553 23567888999988999999
Q ss_pred ecCCCCCCccccCCCCHHHHHHHHHhh
Q 020623 100 LQPSYNEHNIFYGPFDEEFLEEFIKQN 126 (323)
Q Consensus 100 ~k~~~~~~~~y~g~~~~~~L~~fI~~~ 126 (323)
++++ .....+.|..+.+.|.+||.+.
T Consensus 76 ~~~g-~~~~~~~g~~~~~~l~~~l~~~ 101 (104)
T 2e0q_A 76 FKDG-EPVDEIIGAVPREEIEIRIKNL 101 (104)
T ss_dssp EETT-EEEEEEESCCCHHHHHHHHHHH
T ss_pred EECC-eEhhhccCCCCHHHHHHHHHHH
Confidence 9642 1223466888899999999865
|
| >1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0064 Score=46.60 Aligned_cols=96 Identities=24% Similarity=0.364 Sum_probs=65.7
Q ss_pred CceecCChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeec-ccchhhHhhcCCCCCCeEE
Q 020623 28 DVSILNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAK-DFSEDTMVLYDFDKVPALV 98 (323)
Q Consensus 28 ~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~-~~~~~~~~~~~~~~~p~iv 98 (323)
+.....+.+++++.+.+.+. +++|-|+.. ...+.+++.++.+++.|...+ +...+++.++++...|+++
T Consensus 13 ~~~~~~~~~~f~~~v~~~~k--~vlv~f~a~~C~~C~~~~~~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~ 90 (119)
T 1w4v_A 13 TTFNIQDGPDFQDRVVNSET--PVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVL 90 (119)
T ss_dssp SEEECCSHHHHHHHTTTCSS--CEEEEEECTTCHHHHHHHHHHHHHHHHTTTSSEEEEEETTTTHHHHHHTTCCSSSEEE
T ss_pred eEEEecChhhHHHHHHcCCC--cEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCCHHHHHHcCCCcccEEE
Confidence 34445578888876544432 567777543 236778888887677666553 2356788899999999999
Q ss_pred EecCCCCCCccccCCCCHHHHHHHHHhh
Q 020623 99 ALQPSYNEHNIFYGPFDEEFLEEFIKQN 126 (323)
Q Consensus 99 v~k~~~~~~~~y~g~~~~~~L~~fI~~~ 126 (323)
+|+++ .....+.|..+.+.|.+||.+.
T Consensus 91 ~~~~G-~~~~~~~G~~~~~~l~~~l~~~ 117 (119)
T 1w4v_A 91 AMKNG-DVVDKFVGIKDEDQLEAFLKKL 117 (119)
T ss_dssp EEETT-EEEEEEESCCCHHHHHHHHHHH
T ss_pred EEeCC-cEEEEEcCCCCHHHHHHHHHHH
Confidence 99642 1222466888899999999764
|
| >1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0046 Score=47.26 Aligned_cols=103 Identities=14% Similarity=0.127 Sum_probs=69.5
Q ss_pred cCCCeeecChhhHHHhhcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC-eEEEEEcCc----chhhHhhhcCCcCC
Q 020623 127 FLPLSVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIK----QFADFADTFEANKK 201 (323)
Q Consensus 127 ~~Plv~~~t~~~~~~~~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~-l~F~~vd~~----~~~~~~~~~gl~~~ 201 (323)
.+..+..++.+++......++++++.|... .=..-..+...|.+++++++. +.++-++.. ....+++.||+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~v~f~a~-wC~~C~~~~p~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i--- 85 (118)
T 1zma_A 10 NIKDLEVTTVVRAQEALDKKETATFFIGRK-TCPYCRKFAGTLSGVVAETKAHIYFINSEEPSQLNDLQAFRSRYGI--- 85 (118)
T ss_dssp HTTTSEECCHHHHHHHHHTTCCEEEEEECT-TCHHHHHHHHHHHHHHHHHCCCCEEEETTCGGGHHHHHHHHHHHTC---
T ss_pred HHhhhhcCCHHHHHHHHhCCCeEEEEEECC-CCccHHHHHHHHHHHHHhcCCeEEEEECCCcCcHHHHHHHHHHcCC---
Confidence 445677889999988777778887777653 113345677788889988875 766644432 23456788999
Q ss_pred CCCCeEEEEeCCcceeeccCCCCCCCCCCHHHHHHHHH
Q 020623 202 SKLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLE 239 (323)
Q Consensus 202 ~~~P~ivI~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~ 239 (323)
...|.++++...+..... .+..+.+.|.+|++
T Consensus 86 ~~~Pt~~~~~~G~~~~~~------~G~~~~~~l~~~l~ 117 (118)
T 1zma_A 86 PTVPGFVHITDGQINVRC------DSSMSAQEIKDFAG 117 (118)
T ss_dssp CSSCEEEEEETTEEEEEC------CTTCCHHHHHHHHT
T ss_pred CCCCeEEEEECCEEEEEe------cCCCCHHHHHHHhh
Confidence 578999988643322222 34567889999875
|
| >1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0052 Score=47.73 Aligned_cols=96 Identities=17% Similarity=0.118 Sum_probs=67.6
Q ss_pred CceecCChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhc----CceeEEeecc-cchhhHhhcCCCCC
Q 020623 28 DVSILNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYK----KKAWFAVAKD-FSEDTMVLYDFDKV 94 (323)
Q Consensus 28 ~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~----~~~~F~~~~~-~~~~~~~~~~~~~~ 94 (323)
.+..++ .+++++.+...+. +++|-|... ...+.+++.++. +.+.|+.++. ...+++.++++...
T Consensus 8 ~v~~l~-~~~~~~~~~~~~~--~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~ 84 (133)
T 1x5d_A 8 DVIELT-DDSFDKNVLDSED--VWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATVNQVLASRYGIRGF 84 (133)
T ss_dssp SCEECC-TTHHHHHTTTSSS--EEEEEEECTTCHHHHTHHHHHHHHHHHHHHHTTTSEEEEEEETTTCCHHHHHHTCCSS
T ss_pred cCEEcC-HhhHHHHHhcCCC--eEEEEEECCCCHHHHhhcHHHHHHHHHHHhhcCCcEEEEEEECCCCHHHHHhCCCCee
Confidence 467785 5788876644332 567777543 246778888886 5677766532 35678889999899
Q ss_pred CeEEEecCCCCCCccccCCCCHHHHHHHHHhhc
Q 020623 95 PALVALQPSYNEHNIFYGPFDEEFLEEFIKQNF 127 (323)
Q Consensus 95 p~ivv~k~~~~~~~~y~g~~~~~~L~~fI~~~~ 127 (323)
|++++|+++ .....|.|..+.+.|.+||.+..
T Consensus 85 Pt~~~~~~g-~~~~~~~G~~~~~~l~~~l~~~~ 116 (133)
T 1x5d_A 85 PTIKIFQKG-ESPVDYDGGRTRSDIVSRALDLF 116 (133)
T ss_dssp SEEEEEETT-EEEEEECSCCSHHHHHHHHHHHH
T ss_pred CeEEEEeCC-CceEEecCCCCHHHHHHHHHHHh
Confidence 999999862 22335678889999999998653
|
| >2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0053 Score=49.87 Aligned_cols=94 Identities=14% Similarity=0.135 Sum_probs=67.8
Q ss_pred ceecCChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeec-ccchhhHhhcCCCCCCeEEE
Q 020623 29 VSILNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAK-DFSEDTMVLYDFDKVPALVA 99 (323)
Q Consensus 29 v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~-~~~~~~~~~~~~~~~p~ivv 99 (323)
+..+ +.+++++.++.+. +++|-|... ...|.+++.++.+.+.|..++ +...+++.+|++...|++++
T Consensus 49 ~~~l-~~~~f~~~~~~~~---~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~ 124 (155)
T 2ppt_A 49 VAGI-DPAILARAERDDL---PLLVDFWAPWCGPCRQMAPQFQAAAATLAGQVRLAKIDTQAHPAVAGRHRIQGIPAFIL 124 (155)
T ss_dssp EEEC-CHHHHHHHTTCSS---CEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTSTHHHHHTTCCSSSEEEE
T ss_pred CccC-CHHHHHHHHhCCC---cEEEEEECCCCHHHHHHHHHHHHHHHHccCCEEEEEEeCCccHHHHHHcCCCcCCEEEE
Confidence 5667 4688888774444 567777543 247888999988777776653 23567888999999999999
Q ss_pred ecCCCCCCccccCCCCHHHHHHHHHhhc
Q 020623 100 LQPSYNEHNIFYGPFDEEFLEEFIKQNF 127 (323)
Q Consensus 100 ~k~~~~~~~~y~g~~~~~~L~~fI~~~~ 127 (323)
|+++ .....+.|..+.+.|.+||.+..
T Consensus 125 ~~~G-~~~~~~~G~~~~~~l~~~l~~~l 151 (155)
T 2ppt_A 125 FHKG-RELARAAGARPASELVGFVRGKL 151 (155)
T ss_dssp EETT-EEEEEEESCCCHHHHHHHHHHHH
T ss_pred EeCC-eEEEEecCCCCHHHHHHHHHHHh
Confidence 9642 22234678888999999998754
|
| >2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ... | Back alignment and structure |
|---|
Probab=96.87 E-value=0.007 Score=45.07 Aligned_cols=95 Identities=20% Similarity=0.308 Sum_probs=65.0
Q ss_pred CceecCChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeec-ccchhhHhhcCCCCCCeEE
Q 020623 28 DVSILNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAK-DFSEDTMVLYDFDKVPALV 98 (323)
Q Consensus 28 ~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~-~~~~~~~~~~~~~~~p~iv 98 (323)
.|..++ .++++..+...+. +++|-|... ...+.+++.++.+.+.|...+ +...+++.++++...|+++
T Consensus 3 ~v~~l~-~~~f~~~~~~~~~--~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~ 79 (108)
T 2trx_A 3 KIIHLT-DDSFDTDVLKADG--AILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLL 79 (108)
T ss_dssp TEEECC-TTTHHHHTTTCSS--EEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCTTHHHHTTCCSSSEEE
T ss_pred cceecc-hhhHHHHHHhcCC--eEEEEEECCCCHhHHHHHHHHHHHHHHhCCCcEEEEEECCCCHHHHHHcCCcccCEEE
Confidence 466774 5777755433332 567777543 246788898887777776653 2356788899998999999
Q ss_pred EecCCCCCCccccCCCCHHHHHHHHHhh
Q 020623 99 ALQPSYNEHNIFYGPFDEEFLEEFIKQN 126 (323)
Q Consensus 99 v~k~~~~~~~~y~g~~~~~~L~~fI~~~ 126 (323)
+|+++ .....+.|..+.+.|.+||.+.
T Consensus 80 ~~~~G-~~~~~~~G~~~~~~l~~~l~~~ 106 (108)
T 2trx_A 80 LFKNG-EVAATKVGALSKGQLKEFLDAN 106 (108)
T ss_dssp EEETT-EEEEEEESCCCHHHHHHHHHHH
T ss_pred EEeCC-EEEEEEecCCCHHHHHHHHHHh
Confidence 99542 1222466888899999999864
|
| >3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0049 Score=48.88 Aligned_cols=97 Identities=14% Similarity=0.147 Sum_probs=68.8
Q ss_pred CCCceecCChHHHH-HHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeec-ccchhhHhhcCCCCCC
Q 020623 26 APDVSILNSDAEVS-DFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAK-DFSEDTMVLYDFDKVP 95 (323)
Q Consensus 26 ~p~v~~i~s~~~l~-~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~-~~~~~~~~~~~~~~~p 95 (323)
...+..+ +.++++ .+++.++ +++|-|... ...+.+++.++.+.+.|..++ +...+++.++++...|
T Consensus 5 ~~~v~~l-~~~~f~~~~~~~~~---~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~P 80 (140)
T 3hz4_A 5 GSSIIEF-EDMTWSQQVEDSKK---PVVVMFYSPACPYCKAMEPYFEEYAKEYGSSAVFGRINIATNPWTAEKYGVQGTP 80 (140)
T ss_dssp TTTEEEE-CHHHHHHHTTTCSS---CEEEEEECTTCHHHHHHHHHHHHHHHHHTTTSEEEEEETTTCHHHHHHHTCCEES
T ss_pred CcceEEc-chHhHHHHHHhCCC---cEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCcCHhHHHHCCCCcCC
Confidence 4567888 467787 4444444 567777543 247788999988777776653 2366788899998999
Q ss_pred eEEEecCCCCCCccccCCCCHHHHHHHHHhhc
Q 020623 96 ALVALQPSYNEHNIFYGPFDEEFLEEFIKQNF 127 (323)
Q Consensus 96 ~ivv~k~~~~~~~~y~g~~~~~~L~~fI~~~~ 127 (323)
++++|+++ .....|.|..+.+.|.+||....
T Consensus 81 t~~~~~~G-~~~~~~~G~~~~~~l~~~l~~~l 111 (140)
T 3hz4_A 81 TFKFFCHG-RPVWEQVGQIYPSILKNAVRDML 111 (140)
T ss_dssp EEEEEETT-EEEEEEESSCCHHHHHHHHHHHH
T ss_pred EEEEEeCC-cEEEEEcCCCCHHHHHHHHHHHh
Confidence 99999642 12234678888999999998664
|
| >3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A | Back alignment and structure |
|---|
Probab=96.84 E-value=0.013 Score=47.19 Aligned_cols=107 Identities=14% Similarity=0.170 Sum_probs=73.0
Q ss_pred ChhhHHHhh--cCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC-eEEEEEcCcchhhHhhhcCCcCCCCCCeEEEEe
Q 020623 135 NQDTLNLLK--DDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWD 211 (323)
Q Consensus 135 t~~~~~~~~--~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~-l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI~~ 211 (323)
+.+++.... ..++++++-|... -=..-..+...|.++++++++ +.|+.+|.+..+.+++.|++ ...|.+++..
T Consensus 10 ~~~~~~~~i~~~~~k~vlv~F~a~-WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~~l~~~~~v---~~~Pt~~~~~ 85 (149)
T 3gix_A 10 SKKEVDQAIKSTAEKVLVLRFGRD-EDPVCLQLDDILSKTSSDLSKMAAIYLVDVDQTAVYTQYFDI---SYIPSTVFFF 85 (149)
T ss_dssp SHHHHHHHHHHCCSSEEEEEEECT-TSHHHHHHHHHHHHHHTTTTTTEEEEEEETTTCCHHHHHTTC---CSSSEEEEEE
T ss_pred CHHHHHHHHHhcCCCEEEEEEECC-CCHHHHHHHHHHHHHHHHccCceEEEEEECCcCHHHHHHcCC---CccCeEEEEE
Confidence 456777654 4567777777652 113345677889999999998 99999999988888999999 5789998655
Q ss_pred CCcce-e-eccCC-CCCCC-CCCHHHHHHHHHHHHcCc
Q 020623 212 GNENY-L-TVIGS-ESIDE-EDQGSQISRFLEGYREGR 245 (323)
Q Consensus 212 ~~~kY-~-~~~~~-~~~~~-~~t~~~I~~Fi~~~~~Gk 245 (323)
..+.. . +..+. ..+.+ ..+.+.|.++++.+..|.
T Consensus 86 ~G~~v~~~~g~~~~~~~~G~~~~~~~l~~~l~~~~~~~ 123 (149)
T 3gix_A 86 NGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVIYRGA 123 (149)
T ss_dssp TTEEEEEECSSSCCSCEESCCSSHHHHHHHHHHHHHHH
T ss_pred CCeEEEeecCCCCCCeEeeecCCHHHHHHHHHHHHHHh
Confidence 43221 0 10010 01123 467899999999987664
|
| >1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0049 Score=45.71 Aligned_cols=93 Identities=19% Similarity=0.276 Sum_probs=64.7
Q ss_pred ceecCChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeec-ccchhhHhhcCCCCCCeEEE
Q 020623 29 VSILNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAK-DFSEDTMVLYDFDKVPALVA 99 (323)
Q Consensus 29 v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~-~~~~~~~~~~~~~~~p~ivv 99 (323)
+..++ .++++..++.++ +++|-|... ...+.+++.++.+.+.|...+ +.+.+++.++++...|++++
T Consensus 2 v~~l~-~~~~~~~~~~~~---~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~~~Pt~~~ 77 (105)
T 1nsw_A 2 TMTLT-DANFQQAIQGDG---PVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGIMSIPTLIL 77 (105)
T ss_dssp CEEEC-TTTHHHHHSSSS---CEEEEEECTTCHHHHHHHHHHHHHHHHSTTTCEEEEEETTTCHHHHHHTTCCSSSEEEE
T ss_pred ceecc-HHhHHHHHhCCC---cEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECcCCHHHHHHcCCccccEEEE
Confidence 56674 477887776665 467776543 246778888887767666553 23567888999989999999
Q ss_pred ecCCCCCCccccCCCCHHHHHHHHHhh
Q 020623 100 LQPSYNEHNIFYGPFDEEFLEEFIKQN 126 (323)
Q Consensus 100 ~k~~~~~~~~y~g~~~~~~L~~fI~~~ 126 (323)
++++ .....+.|..+.+.|.+||.+.
T Consensus 78 ~~~G-~~~~~~~G~~~~~~l~~~l~~~ 103 (105)
T 1nsw_A 78 FKGG-RPVKQLIGYQPKEQLEAQLADV 103 (105)
T ss_dssp EETT-EEEEEEESCCCHHHHHHHTTTT
T ss_pred EeCC-eEEEEEecCCCHHHHHHHHHHH
Confidence 9542 1222466888889999998754
|
| >1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=96.82 E-value=0.013 Score=45.44 Aligned_cols=94 Identities=14% Similarity=0.204 Sum_probs=65.3
Q ss_pred CceecCChHHHHHHHHh---cCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeec-ccchhhHhhcCCCCCC
Q 020623 28 DVSILNSDAEVSDFVEN---AGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAK-DFSEDTMVLYDFDKVP 95 (323)
Q Consensus 28 ~v~~i~s~~~l~~fl~~---~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~-~~~~~~~~~~~~~~~p 95 (323)
.+..|.|.+++++.+.. .+. +++|-|... ...+.+++.++. ++.|...+ +...+++.+|++...|
T Consensus 17 ~v~~l~~~~~~~~~l~~~~~~~k--~vvv~f~a~wC~~C~~~~~~l~~l~~~~~-~v~~~~vd~d~~~~l~~~~~v~~~P 93 (124)
T 1xfl_A 17 QVIACHTVETWNEQLQKANESKT--LVVVDFTASWCGPCRFIAPFFADLAKKLP-NVLFLKVDTDELKSVASDWAIQAMP 93 (124)
T ss_dssp CCEEESSHHHHHHHHHHHHHTTC--EEEEEEECTTCHHHHHHHHHHHHHHHHCS-SEEEEEEETTTSHHHHHHTTCCSSS
T ss_pred cEEEeCCHHHHHHHHHHhhhcCC--EEEEEEECCCCHHHHHHHHHHHHHHHHCC-CcEEEEEECccCHHHHHHcCCCccC
Confidence 47889899999988875 232 567777543 246778888876 56555442 2356788899999999
Q ss_pred eEEEecCCCCCCccccCCCCHHHHHHHHHhh
Q 020623 96 ALVALQPSYNEHNIFYGPFDEEFLEEFIKQN 126 (323)
Q Consensus 96 ~ivv~k~~~~~~~~y~g~~~~~~L~~fI~~~ 126 (323)
++++++++ .....+.| .+.+.|.+||.+.
T Consensus 94 t~~~~~~G-~~~~~~~G-~~~~~l~~~l~~~ 122 (124)
T 1xfl_A 94 TFMFLKEG-KILDKVVG-AKKDELQSTIAKH 122 (124)
T ss_dssp EEEEEETT-EEEEEEES-CCHHHHHHHHHHH
T ss_pred EEEEEECC-EEEEEEeC-CCHHHHHHHHHHh
Confidence 99999642 11223557 4888999999764
|
| >2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct} | Back alignment and structure |
|---|
Probab=95.86 E-value=0.00018 Score=53.48 Aligned_cols=100 Identities=5% Similarity=0.158 Sum_probs=67.6
Q ss_pred eeecChhhHHHh-hcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC-eEEEEEcCcchhhHhhhcCCcCCCCCCeEE
Q 020623 131 SVPINQDTLNLL-KDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMV 208 (323)
Q Consensus 131 v~~~t~~~~~~~-~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~-l~F~~vd~~~~~~~~~~~gl~~~~~~P~iv 208 (323)
+..++.+++... ...++++++.|... .-..-..+...++++++++++ +.|+.+|.+....+++.+|+ ...|.++
T Consensus 3 v~~l~~~~~~~~~~~~~~~~~v~f~~~-~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v---~~~Pt~~ 78 (106)
T 2yj7_A 3 VIEVTDENFEQEVLKSDKPVLVDFWAP-WCGPCRMIAPIIEELAKEYEGKVKVVKVNVDENPNTAAQYGI---RSIPTLL 78 (106)
Confidence 456777777643 45567777766642 112235566788899999886 99999999877778888999 4689998
Q ss_pred EEeCCccee-eccCCCCCCCCCCHHHHHHHHHHH
Q 020623 209 VWDGNENYL-TVIGSESIDEEDQGSQISRFLEGY 241 (323)
Q Consensus 209 I~~~~~kY~-~~~~~~~~~~~~t~~~I~~Fi~~~ 241 (323)
+.. +++.. .. .+..+.+.+.+|++..
T Consensus 79 ~~~-~g~~~~~~------~g~~~~~~l~~~l~~~ 105 (106)
T 2yj7_A 79 LFK-NGQVVDRL------VGAQPKEALKERIDKH 105 (106)
Confidence 873 43211 11 2235667888888764
|
| >2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0087 Score=45.53 Aligned_cols=92 Identities=21% Similarity=0.345 Sum_probs=63.5
Q ss_pred ceecCChHHHHHHHHh-cCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeec-ccchhhHhhcCCCCCCeEE
Q 020623 29 VSILNSDAEVSDFVEN-AGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAK-DFSEDTMVLYDFDKVPALV 98 (323)
Q Consensus 29 v~~i~s~~~l~~fl~~-~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~-~~~~~~~~~~~~~~~p~iv 98 (323)
+..+++.+++++.+++ .+. +++|-|... ...+.+++.++ ++.|...+ +...+++.++++...|+++
T Consensus 15 v~~l~~~~~~~~~l~~~~~~--~~vv~f~a~wC~~C~~~~~~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~v~~~Pt~~ 90 (117)
T 2xc2_A 15 LIELKQDGDLESLLEQHKNK--LVVVDFFATWCGPCKTIAPLFKELSEKY--DAIFVKVDVDKLEETARKYNISAMPTFI 90 (117)
T ss_dssp EEECCSTTHHHHHHHHTTTS--CEEEEEECTTCHHHHHHHHHHHHHHTTS--SSEEEEEETTTSHHHHHHTTCCSSSEEE
T ss_pred eEEeCCHHHHHHHHHhCCCC--EEEEEEECCCCHhHHHHhHHHHHHHHHc--CcEEEEEECCccHHHHHHcCCCccceEE
Confidence 7889888999998884 222 567777543 24677778776 45555442 2356788899998999999
Q ss_pred EecCCCCCCccccCCCCHHHHHHHHHhh
Q 020623 99 ALQPSYNEHNIFYGPFDEEFLEEFIKQN 126 (323)
Q Consensus 99 v~k~~~~~~~~y~g~~~~~~L~~fI~~~ 126 (323)
+++++ .....+.| .+.+.|.+||.+.
T Consensus 91 ~~~~G-~~~~~~~G-~~~~~l~~~l~~~ 116 (117)
T 2xc2_A 91 AIKNG-EKVGDVVG-ASIAKVEDMIKKF 116 (117)
T ss_dssp EEETT-EEEEEEES-SCHHHHHHHHHHH
T ss_pred EEeCC-cEEEEEeC-CCHHHHHHHHHHh
Confidence 99642 12223557 5788999999864
|
| >2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A | Back alignment and structure |
|---|
Probab=96.79 E-value=0.014 Score=44.01 Aligned_cols=96 Identities=17% Similarity=0.237 Sum_probs=66.4
Q ss_pred CCCceecCChHHHHHHHHh----cCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeec-ccchhhHhhcCCC
Q 020623 26 APDVSILNSDAEVSDFVEN----AGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAK-DFSEDTMVLYDFD 92 (323)
Q Consensus 26 ~p~v~~i~s~~~l~~fl~~----~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~-~~~~~~~~~~~~~ 92 (323)
+..+..|.+.+++++.+.. +. +++|-|... ...+.+++.++. ++.|...+ +...+++.++++.
T Consensus 5 ~~~v~~i~~~~~~~~~~~~~~~~~~---~~vv~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~~v~~~~~~~~~~~~~v~ 80 (118)
T 2vm1_A 5 EGAVIACHTKQEFDTHMANGKDTGK---LVIIDFTASWCGPCRVIAPVFAEYAKKFP-GAIFLKVDVDELKDVAEAYNVE 80 (118)
T ss_dssp CCCEEECCSHHHHHHHHHHHHHHTC---CEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEETTTSHHHHHHTTCC
T ss_pred CCceEEecCHHHHHHHHHhcccCCC---EEEEEEECCCCHhHHHHhHHHHHHHHHCC-CcEEEEEEcccCHHHHHHcCCC
Confidence 4467889899999988875 33 467776543 246778888876 45555442 2356788899998
Q ss_pred CCCeEEEecCCCCCCccccCCCCHHHHHHHHHhhc
Q 020623 93 KVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQNF 127 (323)
Q Consensus 93 ~~p~ivv~k~~~~~~~~y~g~~~~~~L~~fI~~~~ 127 (323)
..|++++++++ .....+.| .+.+.|.+||.+..
T Consensus 81 ~~Pt~~~~~~g-~~~~~~~g-~~~~~l~~~l~~~~ 113 (118)
T 2vm1_A 81 AMPTFLFIKDG-EKVDSVVG-GRKDDIHTKIVALM 113 (118)
T ss_dssp SBSEEEEEETT-EEEEEEES-CCHHHHHHHHHHHH
T ss_pred cCcEEEEEeCC-eEEEEecC-CCHHHHHHHHHHHh
Confidence 99999999642 11223457 47889999998754
|
| >2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0099 Score=48.72 Aligned_cols=111 Identities=16% Similarity=0.209 Sum_probs=74.0
Q ss_pred eeecC-hhhHHHh-h-cCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC-eEEEEEcCcchhhHhhhcCCcCCCCCCe
Q 020623 131 SVPIN-QDTLNLL-K-DDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPK 206 (323)
Q Consensus 131 v~~~t-~~~~~~~-~-~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~-l~F~~vd~~~~~~~~~~~gl~~~~~~P~ 206 (323)
+..++ .+++... . .+++|+++-|...- -..=+.+...|.++|+++.+ +.|+.+|.++.+.++..|++ ...|.
T Consensus 23 v~~l~t~~~f~~~v~~~~~k~VVVdF~A~W-CgPCk~m~PvleelA~e~~~~v~f~kVDVDe~~e~a~~y~V---~siPT 98 (160)
T 2av4_A 23 LQHLNSGWAVDQAIVNEDERLVCIRFGHDY-DPDCMKMDELLYKVADDIKNFCVIYLVDITEVPDFNTMYEL---YDPVS 98 (160)
T ss_dssp CEECCSHHHHHHHHHHCSSSEEEEEEECTT-SHHHHHHHHHHHHHHHHHTTTEEEEEEETTTCCTTTTTTTC---CSSEE
T ss_pred hhccCCHHHHHHHHHhcCCCEEEEEEECCC-ChhHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHcCC---CCCCE
Confidence 44555 3677654 3 35678877776521 12345677899999999988 99999999999999999999 57899
Q ss_pred EEEEeCCccee-e-ccC-CCCCCCCCC-HHHHHHHHHHHHcCc
Q 020623 207 MVVWDGNENYL-T-VIG-SESIDEEDQ-GSQISRFLEGYREGR 245 (323)
Q Consensus 207 ivI~~~~~kY~-~-~~~-~~~~~~~~t-~~~I~~Fi~~~~~Gk 245 (323)
++++...+.-. . -.| -..+-+..+ .+.|.++|+.++.|.
T Consensus 99 ~~fFk~G~~v~vd~Gtgd~~k~vGa~~~k~~l~~~ie~~~r~a 141 (160)
T 2av4_A 99 VMFFYRNKHMMIDLGTGNNNKINWPMNNKQEFIDIVETIFRGA 141 (160)
T ss_dssp EEEEETTEEEEEECSSSCCSCBCSCCCCHHHHHHHHHHHHHHH
T ss_pred EEEEECCEEEEEecCCCCcCeEEeecCCHHHHHHHHHHHHHHh
Confidence 98776443221 1 000 001123344 788888888877664
|
| >4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.00099 Score=49.99 Aligned_cols=92 Identities=11% Similarity=0.012 Sum_probs=52.1
Q ss_pred eecCChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeec-ccchhhHhhcCCCCCCeEEEe
Q 020623 30 SILNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAK-DFSEDTMVLYDFDKVPALVAL 100 (323)
Q Consensus 30 ~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~-~~~~~~~~~~~~~~~p~ivv~ 100 (323)
..|+|.+++++.++.++ +++|-|... .+.+.+++.++. ++.|...+ +...+++.++++...|++++|
T Consensus 3 ~~i~~~~~~~~~~~~~~---~vlv~f~a~wC~~C~~~~p~~~~~~~~~~-~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~ 78 (105)
T 4euy_A 3 NTFKTIEELATYIEEQQ---LVLLFIKTENCGVCDVMLRKVNYVLENYN-YVEKIEILLQDMQEIAGRYAVFTGPTVLLF 78 (105)
T ss_dssp -------CCSSSTTCSS---EEEEEEEESSCHHHHHHHHHHHHHHHTCT-TEEEEEEEECCC---------CCCCEEEEE
T ss_pred cccCCHHHHHHHHhcCC---CEEEEEeCCCCcchHHHHHHHHHHHHHcC-CceEEEEECCCCHHHHHhcCCCCCCEEEEE
Confidence 45667777777775555 567777542 246788888874 56665542 235678889999899999999
Q ss_pred cCCCCCCccccCCCCHHHHHHHHHhh
Q 020623 101 QPSYNEHNIFYGPFDEEFLEEFIKQN 126 (323)
Q Consensus 101 k~~~~~~~~y~g~~~~~~L~~fI~~~ 126 (323)
+++ .....+.|..+.+.|.+||++.
T Consensus 79 ~~G-~~~~~~~g~~~~~~l~~~l~~~ 103 (105)
T 4euy_A 79 YNG-KEILRESRFISLENLERTIQLF 103 (105)
T ss_dssp ETT-EEEEEEESSCCHHHHHHHHHTT
T ss_pred eCC-eEEEEEeCCcCHHHHHHHHHHh
Confidence 742 1222456888999999999864
|
| >1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0078 Score=46.46 Aligned_cols=100 Identities=14% Similarity=0.191 Sum_probs=70.6
Q ss_pred CceecCChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcC-ceeEEeec-ccchhhHhhcCCCCCCeE
Q 020623 28 DVSILNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKK-KAWFAVAK-DFSEDTMVLYDFDKVPAL 97 (323)
Q Consensus 28 ~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~-~~~F~~~~-~~~~~~~~~~~~~~~p~i 97 (323)
.+..+ +.++++++++.. ++|-|... ...+.+++..+.+ .+.|..++ +...+++.+|++...|++
T Consensus 8 ~v~~l-~~~~f~~~~~~~-----vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~ 81 (126)
T 1x5e_A 8 NVRVI-TDENWRELLEGD-----WMIEFYAPWCPACQNLQPEWESFAEWGEDLEVNIAKVDVTEQPGLSGRFIINALPTI 81 (126)
T ss_dssp SEEEC-CTTTHHHHTSSE-----EEEEEECSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEETTTCHHHHHHTTCCSSSEE
T ss_pred ccEEe-cHHHHHHHhCCC-----EEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECcCCHHHHHHcCCcccCEE
Confidence 46777 458888876542 45666542 2467788888775 56666553 235678889999899999
Q ss_pred EEecCCCCCCccccCCCCHHHHHHHHHhhcCCCeeecC
Q 020623 98 VALQPSYNEHNIFYGPFDEEFLEEFIKQNFLPLSVPIN 135 (323)
Q Consensus 98 vv~k~~~~~~~~y~g~~~~~~L~~fI~~~~~Plv~~~t 135 (323)
++|++ ++...|.|..+.+.|.+||.+...+.+.+++
T Consensus 82 ~~~~~--G~~~~~~G~~~~~~l~~~l~~~~~~~~~~~~ 117 (126)
T 1x5e_A 82 YHCKD--GEFRRYQGPRTKKDFINFISDKEWKSIEPVS 117 (126)
T ss_dssp EEEET--TEEEECCSCCCHHHHHHHHHTCGGGGSCEEC
T ss_pred EEEeC--CeEEEeecCCCHHHHHHHHHHHhhccCCCch
Confidence 99964 3334577888999999999998766665554
|
| >3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B | Back alignment and structure |
|---|
Probab=96.74 E-value=0.013 Score=44.13 Aligned_cols=92 Identities=15% Similarity=0.234 Sum_probs=64.9
Q ss_pred ceecCChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEee-cccchhhHhhcCCCCCCeEEE
Q 020623 29 VSILNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVA-KDFSEDTMVLYDFDKVPALVA 99 (323)
Q Consensus 29 v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~-~~~~~~~~~~~~~~~~p~ivv 99 (323)
.....+.+++++.++.++ +++|-|... ...+.+++.++.+ +.|... -+...+++.++++...|++++
T Consensus 8 ~~~~~~~~~f~~~~~~~k---~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~-~~~~~vd~~~~~~l~~~~~v~~~Pt~~~ 83 (109)
T 3f3q_A 8 VTQFKTASEFDSAIAQDK---LVVVDFYATWCGPCKMIAPMIEKFSEQYPQ-ADFYKLDVDELGDVAQKNEVSAMPTLLL 83 (109)
T ss_dssp CEECCSHHHHHHHTTSSS---CEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEETTTCHHHHHHTTCCSSSEEEE
T ss_pred ccCCCCHHHHHHHHhcCC---EEEEEEECCcCHhHHHHHHHHHHHHHHCCC-CEEEEEECCCCHHHHHHcCCCccCEEEE
Confidence 345678899999888766 467777543 2467788888864 555444 234567888999999999999
Q ss_pred ecCCCCCCccccCCCCHHHHHHHHHhh
Q 020623 100 LQPSYNEHNIFYGPFDEEFLEEFIKQN 126 (323)
Q Consensus 100 ~k~~~~~~~~y~g~~~~~~L~~fI~~~ 126 (323)
|+++ .....+.|. +.+.|.+||.++
T Consensus 84 ~~~G-~~~~~~~G~-~~~~l~~~i~~~ 108 (109)
T 3f3q_A 84 FKNG-KEVAKVVGA-NPAAIKQAIAAN 108 (109)
T ss_dssp EETT-EEEEEEESS-CHHHHHHHHHHH
T ss_pred EECC-EEEEEEeCC-CHHHHHHHHHhh
Confidence 9742 222245576 678999999865
|
| >2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A | Back alignment and structure |
|---|
Probab=96.74 E-value=0.017 Score=45.28 Aligned_cols=105 Identities=15% Similarity=0.124 Sum_probs=68.5
Q ss_pred CCCeeec-ChhhHHHhhc--CCCcEEEEEEeCCChhHHHHHHHHH---HHHHHhCCCeEEEEEcC----cchhhHhhhcC
Q 020623 128 LPLSVPI-NQDTLNLLKD--DKRKIVLAIVEDETEEKSQKLVTTL---KAAASANRELVFCYVGI----KQFADFADTFE 197 (323)
Q Consensus 128 ~Plv~~~-t~~~~~~~~~--~~~~~v~~f~~~~~~e~~~~~~~~l---~~~A~~~~~l~F~~vd~----~~~~~~~~~~g 197 (323)
.|.+..+ +.+++...+. .++++++.|...- =..-..+...+ .++++.++++.|+.+|. +....+++.||
T Consensus 10 ~~~f~~~~~~~~~~~~l~~~~~k~vlv~F~a~w-C~~C~~~~~~~~~~~~l~~~~~~~~~~~vd~~~~~~~~~~l~~~~~ 88 (134)
T 2fwh_A 10 HLNFTQIKTVDELNQALVEAKGKPVMLDLYADW-CVACKEFEKYTFSDPQVQKALADTVLLQANVTANDAQDVALLKHLN 88 (134)
T ss_dssp CCCCEECCSHHHHHHHHHHHTTSCEEEEEECTT-CHHHHHHHHHTTTSHHHHHHTTTSEEEEEECTTCCHHHHHHHHHTT
T ss_pred CCCcEEecCHHHHHHHHHHhcCCcEEEEEECCC-CHHHHHHHHHhcCCHHHHHHhcCcEEEEEeCCCCcchHHHHHHHcC
Confidence 3445433 3455554333 2678877777521 12224455556 78888888899999998 34456788999
Q ss_pred CcCCCCCCeEEEEeCCccee---eccCCCCCCCCCCHHHHHHHHHHHH
Q 020623 198 ANKKSKLPKMVVWDGNENYL---TVIGSESIDEEDQGSQISRFLEGYR 242 (323)
Q Consensus 198 l~~~~~~P~ivI~~~~~kY~---~~~~~~~~~~~~t~~~I~~Fi~~~~ 242 (323)
+ ...|.+++++.+++-. .. .+..+.+.|.++++.+.
T Consensus 89 v---~~~Pt~~~~d~~G~~v~~~~~------~G~~~~~~l~~~l~~~~ 127 (134)
T 2fwh_A 89 V---LGLPTILFFDGQGQEHPQARV------TGFMDAETFSAHLRDRQ 127 (134)
T ss_dssp C---CSSSEEEEECTTSCBCGGGCB------CSCCCHHHHHHHHHHC-
T ss_pred C---CCCCEEEEECCCCCEeeeeee------eeccCHHHHHHHHHhcC
Confidence 9 5799999998876432 12 34578899999998653
|
| >2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.018 Score=45.19 Aligned_cols=97 Identities=16% Similarity=0.267 Sum_probs=68.2
Q ss_pred CceecCChHHHHHHHHh-----------cCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeec-ccchhhHh
Q 020623 28 DVSILNSDAEVSDFVEN-----------AGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAK-DFSEDTMV 87 (323)
Q Consensus 28 ~v~~i~s~~~l~~fl~~-----------~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~-~~~~~~~~ 87 (323)
.+..+ +.+++.+.+.+ .+. +++|-|... ...+.+++.++.+.+.|..++ +...+++.
T Consensus 10 ~v~~l-~~~~f~~~v~~~~~~~~~~~~~~~k--~~lv~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~ 86 (136)
T 2l5l_A 10 KVIHL-TKAEFLAKVYNFEKNPEEWKYEGDK--PAIVDFYADWCGPCKMVAPILDELAKEYDGQIVIYKVDTEKEQELAG 86 (136)
T ss_dssp SEEEE-CHHHHHHHTBCTTTCSSSCCBCCSS--CEEEEEECTTSHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHH
T ss_pred ceEEe-cchHHHHHHHhhccCccceeecCCC--EEEEEEECCcCHHHHHHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHH
Confidence 46777 46788776653 222 567777543 246788898887777776553 23567888
Q ss_pred hcCCCCCCeEEEecCCCCCCccccCCCCHHHHHHHHHhhcC
Q 020623 88 LYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQNFL 128 (323)
Q Consensus 88 ~~~~~~~p~ivv~k~~~~~~~~y~g~~~~~~L~~fI~~~~~ 128 (323)
+|++...|++++|.. .++...+.|..+.+.|.+||.+..-
T Consensus 87 ~~~v~~~Pt~~~~~~-~G~~~~~~G~~~~~~l~~~l~~~~~ 126 (136)
T 2l5l_A 87 AFGIRSIPSILFIPM-EGKPEMAQGAMPKASFKKAIDEFLL 126 (136)
T ss_dssp HTTCCSSCEEEEECS-SSCCEEEESCCCHHHHHHHHHHHHT
T ss_pred HcCCCCCCEEEEECC-CCcEEEEeCCCCHHHHHHHHHHHhh
Confidence 999989999999943 2333356788899999999987653
|
| >3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.011 Score=46.05 Aligned_cols=98 Identities=9% Similarity=0.149 Sum_probs=64.8
Q ss_pred cCCCcEEEEEEeCCChhHHHHHHHHHH--HHHHhCCC-eEEEEEcC---cchhhHhhhcCCcCCCCCCeEEEEeCCccee
Q 020623 144 DDKRKIVLAIVEDETEEKSQKLVTTLK--AAASANRE-LVFCYVGI---KQFADFADTFEANKKSKLPKMVVWDGNENYL 217 (323)
Q Consensus 144 ~~~~~~v~~f~~~~~~e~~~~~~~~l~--~~A~~~~~-l~F~~vd~---~~~~~~~~~~gl~~~~~~P~ivI~~~~~kY~ 217 (323)
..++++++.|... -=..-..+...|. ++++.+++ +.|+.+|. +....+++.||+......|.+++++.+++..
T Consensus 27 ~~~k~vlv~f~a~-wC~~C~~~~~~l~~~~~~~~~~~~~~~~~vd~~~~~~~~~l~~~~~v~~~~~~Pt~~~~d~~G~~~ 105 (133)
T 3fk8_A 27 RTHKPTLLVFGAN-WCTDCRALDKSLRNQKNTALIAKHFEVVKIDVGNFDRNLELSQAYGDPIQDGIPAVVVVNSDGKVR 105 (133)
T ss_dssp HHTCCEEEEEECT-TCHHHHHHHHHHTSHHHHHHHHHHCEEEEEECTTTTSSHHHHHHTTCGGGGCSSEEEEECTTSCEE
T ss_pred hcCCcEEEEEcCC-CCHHHHHHHHHhCCHHHHHHhcCCEEEEEEeCCcccchHHHHHHhCCccCCccceEEEECCCCCEE
Confidence 3467887777652 1122345556777 78888765 99999999 6667888899882114799999998876432
Q ss_pred ec-cC-CCCCCCCCCHHHHHHHHHHHH
Q 020623 218 TV-IG-SESIDEEDQGSQISRFLEGYR 242 (323)
Q Consensus 218 ~~-~~-~~~~~~~~t~~~I~~Fi~~~~ 242 (323)
.. .| ........+.+.|.+|++.+.
T Consensus 106 ~~~~g~~~~~~~~~~~~~l~~~l~~l~ 132 (133)
T 3fk8_A 106 YTTKGGELANARKMSDQGIYDFFAKIT 132 (133)
T ss_dssp EECCSCTTTTGGGSCHHHHHHHHHHHH
T ss_pred EEecCCcccccccCCHHHHHHHHHHhc
Confidence 21 12 111011468899999999875
|
| >1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=96.70 E-value=0.014 Score=44.52 Aligned_cols=92 Identities=11% Similarity=0.187 Sum_probs=63.1
Q ss_pred CceecCChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeeccc-----chhhHhhcCCCCC
Q 020623 28 DVSILNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAKDF-----SEDTMVLYDFDKV 94 (323)
Q Consensus 28 ~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~~~-----~~~~~~~~~~~~~ 94 (323)
.+..+ +.++++..+...+ +++|-|... .+.+.+++..+...+.+...+.. ..+++.++++...
T Consensus 13 ~~~~~-~~~~~~~~~~~~~---~~~v~f~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~ 88 (118)
T 1zma_A 13 DLEVT-TVVRAQEALDKKE---TATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFINSEEPSQLNDLQAFRSRYGIPTV 88 (118)
T ss_dssp TSEEC-CHHHHHHHHHTTC---CEEEEEECTTCHHHHHHHHHHHHHHHHHCCCCEEEETTCGGGHHHHHHHHHHHTCCSS
T ss_pred hhhcC-CHHHHHHHHhCCC---eEEEEEECCCCccHHHHHHHHHHHHHhcCCeEEEEECCCcCcHHHHHHHHHHcCCCCC
Confidence 45666 6788988887765 467777543 24677888877655555433211 1356778999899
Q ss_pred CeEEEecCCCCCCccccCCCCHHHHHHHHH
Q 020623 95 PALVALQPSYNEHNIFYGPFDEEFLEEFIK 124 (323)
Q Consensus 95 p~ivv~k~~~~~~~~y~g~~~~~~L~~fI~ 124 (323)
|++++++++ .....+.|..+.+.|.+||+
T Consensus 89 Pt~~~~~~G-~~~~~~~G~~~~~~l~~~l~ 117 (118)
T 1zma_A 89 PGFVHITDG-QINVRCDSSMSAQEIKDFAG 117 (118)
T ss_dssp CEEEEEETT-EEEEECCTTCCHHHHHHHHT
T ss_pred CeEEEEECC-EEEEEecCCCCHHHHHHHhh
Confidence 999999752 22234678889999999986
|
| >2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0057 Score=46.63 Aligned_cols=96 Identities=14% Similarity=0.170 Sum_probs=65.4
Q ss_pred CCCceecCChHHHHHHH-HhcCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeec-ccchhhHhhcCCCCCC
Q 020623 26 APDVSILNSDAEVSDFV-ENAGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAK-DFSEDTMVLYDFDKVP 95 (323)
Q Consensus 26 ~p~v~~i~s~~~l~~fl-~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~-~~~~~~~~~~~~~~~p 95 (323)
...+..+++ +++...+ +.+. +++|-|... ...+.+++.++.+.+.|...+ +...+++.++++...|
T Consensus 11 ~~~v~~l~~-~~~~~~~~~~~~---~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~P 86 (121)
T 2i1u_A 11 KSATIKVTD-ASFATDVLSSNK---PVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNPETARNFQVVSIP 86 (121)
T ss_dssp -CCSEECCT-TTHHHHTTTCSS---CEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSS
T ss_pred cccceecCH-HHHHHHHHhCCC---cEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCCHHHHHhcCCCcCC
Confidence 445778864 6666544 4443 467777543 246788898887677776553 2356788899998999
Q ss_pred eEEEecCCCCCCccccCCCCHHHHHHHHHhh
Q 020623 96 ALVALQPSYNEHNIFYGPFDEEFLEEFIKQN 126 (323)
Q Consensus 96 ~ivv~k~~~~~~~~y~g~~~~~~L~~fI~~~ 126 (323)
++++++++ .....+.|..+.+.|.+||.+.
T Consensus 87 t~~~~~~g-~~~~~~~G~~~~~~l~~~l~~~ 116 (121)
T 2i1u_A 87 TLILFKDG-QPVKRIVGAKGKAALLRELSDV 116 (121)
T ss_dssp EEEEEETT-EEEEEEESCCCHHHHHHHTCSC
T ss_pred EEEEEECC-EEEEEecCCCCHHHHHHHHHHH
Confidence 99999742 1223466888899999999764
|
| >2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A* | Back alignment and structure |
|---|
Probab=96.69 E-value=0.018 Score=43.91 Aligned_cols=95 Identities=18% Similarity=0.253 Sum_probs=65.6
Q ss_pred CCceecCChHHHHHHHHh---cCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeec-ccchhhHhhcCCCCC
Q 020623 27 PDVSILNSDAEVSDFVEN---AGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAK-DFSEDTMVLYDFDKV 94 (323)
Q Consensus 27 p~v~~i~s~~~l~~fl~~---~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~-~~~~~~~~~~~~~~~ 94 (323)
+++..+.+.++++..+.. .+. +++|-|... ...+.+++.++.+ +.|...+ +...+++.+|++...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~--~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~vd~~~~~~~~~~~~v~~~ 88 (122)
T 2vlu_A 12 AEVISVHSLEQWTMQIEEANTAKK--LVVIDFTASWCGPCRIMAPVFADLAKKFPN-AVFLKVDVDELKPIAEQFSVEAM 88 (122)
T ss_dssp CCCEEECSHHHHHHHHHHHHHTTC--CEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEETTTCHHHHHHTTCCSS
T ss_pred CcceeccCHHHHHHHHHHhhccCC--EEEEEEECCCCHHHHHHHHHHHHHHHHCCC-cEEEEEECCCCHHHHHHcCCCcc
Confidence 345556688999888765 232 567777543 2467788888875 6665553 235678889999899
Q ss_pred CeEEEecCCCCCCccccCCCCHHHHHHHHHhh
Q 020623 95 PALVALQPSYNEHNIFYGPFDEEFLEEFIKQN 126 (323)
Q Consensus 95 p~ivv~k~~~~~~~~y~g~~~~~~L~~fI~~~ 126 (323)
|++++++++ .....+.|.. .+.|.+||.+.
T Consensus 89 Pt~~~~~~G-~~~~~~~G~~-~~~l~~~l~~~ 118 (122)
T 2vlu_A 89 PTFLFMKEG-DVKDRVVGAI-KEELTAKVGLH 118 (122)
T ss_dssp SEEEEEETT-EEEEEEESSC-HHHHHHHHHHH
T ss_pred cEEEEEeCC-EEEEEEeCcC-HHHHHHHHHHH
Confidence 999999642 1223466877 88999999875
|
| >3bj5_A Protein disulfide-isomerase; thioredoxin fold, chaperone, endoplasmic reticulum, isomeras membrane, redox-active center; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.011 Score=47.69 Aligned_cols=104 Identities=16% Similarity=0.133 Sum_probs=63.7
Q ss_pred HHHHhcCCCceecCChHHHHHHHHhcCCcccEEEE-ecC--C------hhHHHHHHHhhcCceeEEeecc--cc-hhhHh
Q 020623 20 YLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIG-FGL--D------ESVMSNLALKYKKKAWFAVAKD--FS-EDTMV 87 (323)
Q Consensus 20 ~l~k~~~p~v~~i~s~~~l~~fl~~~~~~~~~vVg-f~~--~------~~~f~~~A~~~~~~~~F~~~~~--~~-~~~~~ 87 (323)
.|++..-|.|.+++ .+.+..+.+.. . +..+. |.. + ...|.++|+++++.+.|..++. .+ ..++.
T Consensus 7 ~~~~~~~PLV~e~t-~en~~~~~~~~-~--~~~~l~f~~~~~~~~~~~~~~~~~vAk~fkgki~Fv~vd~~~~~~~~~l~ 82 (147)
T 3bj5_A 7 HMKHNQLPLVIEFT-EQTAPKIFGGE-I--KTHILLFLPKSVSDYDGKLSNFKTAAESFKGKILFAFIDSDHTDNQRILE 82 (147)
T ss_dssp --------CEEECC-TTTHHHHHSSS-C--CEEEEEECCTTSSSHHHHHHHHHHHHHTTTTTCEEEEECTTCGGGHHHHH
T ss_pred chhhccCCeeEEec-cccHHHHhcCC-C--ceEEEEEecCCcHhHHHHHHHHHHHHHHcCCceEEEEEecchHhHHHHHH
Confidence 56777889999995 45667765443 3 33333 421 1 1357889999999998988853 11 23556
Q ss_pred hcCCCC--CCeEEEecC-CCCCCcccc-CCCCHHHHHHHHHhhc
Q 020623 88 LYDFDK--VPALVALQP-SYNEHNIFY-GPFDEEFLEEFIKQNF 127 (323)
Q Consensus 88 ~~~~~~--~p~ivv~k~-~~~~~~~y~-g~~~~~~L~~fI~~~~ 127 (323)
.+|++. .|+++++.. ....++.+. ++++.+.|++|+++..
T Consensus 83 ~fGl~~~~~P~v~i~~~~~~~~Ky~~~~~~~t~~~i~~Fv~d~l 126 (147)
T 3bj5_A 83 FFGLKKEECPAVRLITLEEEMTKYKPESEELTAERITEFCHRFL 126 (147)
T ss_dssp HTTCCGGGCSEEEEEECSSSCEEECCSCCCCCHHHHHHHHHHHH
T ss_pred HcCCCcccCCEEEEEecccccccCCCCcccCCHHHHHHHHHHHH
Confidence 788863 699988864 223345554 7899999999998764
|
| >1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=96.67 E-value=0.013 Score=43.95 Aligned_cols=94 Identities=14% Similarity=0.238 Sum_probs=64.2
Q ss_pred CceecCChHHHHHHHHh---cCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeec-ccchhhHhhcCCCCCC
Q 020623 28 DVSILNSDAEVSDFVEN---AGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAK-DFSEDTMVLYDFDKVP 95 (323)
Q Consensus 28 ~v~~i~s~~~l~~fl~~---~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~-~~~~~~~~~~~~~~~p 95 (323)
.+..|.+.+++++.+.. .+. +++|-|... ...+.+++..+. ++.|...+ +...+++.++++...|
T Consensus 5 ~v~~i~~~~~~~~~~~~~~~~~~--~~vv~f~~~~C~~C~~~~~~l~~~~~~~~-~v~~~~v~~~~~~~~~~~~~v~~~P 81 (113)
T 1ti3_A 5 QVIACHTVDTWKEHFEKGKGSQK--LIVVDFTASWCPPCKMIAPIFAELAKKFP-NVTFLKVDVDELKAVAEEWNVEAMP 81 (113)
T ss_dssp CEEEECSHHHHHHHHHHHTTSSS--EEEEEEECSSCHHHHHHHHHHHHHHHHCS-SEEEEEEETTTCHHHHHHHHCSSTT
T ss_pred ceeEeccHHHHHHHHHHhhhcCC--eEEEEEECCCCHHHHHHHHHHHHHHHhCC-CcEEEEEEccccHHHHHhCCCCccc
Confidence 57888899999998876 222 567776543 236778888776 56565443 2356788889998999
Q ss_pred eEEEecCCCCCCccccCCCCHHHHHHHHHhh
Q 020623 96 ALVALQPSYNEHNIFYGPFDEEFLEEFIKQN 126 (323)
Q Consensus 96 ~ivv~k~~~~~~~~y~g~~~~~~L~~fI~~~ 126 (323)
++++++++ .....+.| .+.+.|.+||.+.
T Consensus 82 t~~~~~~G-~~~~~~~g-~~~~~l~~~l~~~ 110 (113)
T 1ti3_A 82 TFIFLKDG-KLVDKTVG-ADKDGLPTLVAKH 110 (113)
T ss_dssp EEEEEETT-EEEEEEEC-CCTTHHHHHHHHH
T ss_pred EEEEEeCC-EEEEEEec-CCHHHHHHHHHHh
Confidence 99999642 11223457 5778899999764
|
| >2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0055 Score=46.80 Aligned_cols=95 Identities=17% Similarity=0.215 Sum_probs=64.3
Q ss_pred CCceecCChHHHHHHH-HhcCCcccEEEEecCC--------hhHHHHHHHhhcC-----ceeEEeecccchhhHhhcCCC
Q 020623 27 PDVSILNSDAEVSDFV-ENAGTFFPLFIGFGLD--------ESVMSNLALKYKK-----KAWFAVAKDFSEDTMVLYDFD 92 (323)
Q Consensus 27 p~v~~i~s~~~l~~fl-~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~-----~~~F~~~~~~~~~~~~~~~~~ 92 (323)
..+..++ .++++..+ ..+. +++|-|... ...|.+++.++.+ .+.|+..+....+++. ++.
T Consensus 7 ~~v~~l~-~~~f~~~v~~~~~---~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~--~v~ 80 (121)
T 2djj_A 7 GPVTVVV-AKNYNEIVLDDTK---DVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATANDVPD--EIQ 80 (121)
T ss_dssp CSSEECC-TTTTTTSSSCTTS---CEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTTSCCSS--CCS
T ss_pred CCeEEec-ccCHHHHhhcCCC---CEEEEEECCCCHhHHHhhHHHHHHHHHHhhcccCCceEEEEEECccccccc--ccC
Confidence 4577785 47777665 3333 567777542 2478889998876 6777666432223443 787
Q ss_pred CCCeEEEecCCCCC-CccccCCCCHHHHHHHHHhhc
Q 020623 93 KVPALVALQPSYNE-HNIFYGPFDEEFLEEFIKQNF 127 (323)
Q Consensus 93 ~~p~ivv~k~~~~~-~~~y~g~~~~~~L~~fI~~~~ 127 (323)
..|++++|+++... ...|.|..+.+.|.+||.++.
T Consensus 81 ~~Pt~~~~~~~~~~~~~~~~G~~~~~~l~~~i~~~~ 116 (121)
T 2djj_A 81 GFPTIKLYPAGAKGQPVTYSGSRTVEDLIKFIAENG 116 (121)
T ss_dssp SSSEEEEECSSCTTSCCCCCCCSCHHHHHHHHHHTS
T ss_pred cCCeEEEEeCcCCCCceEecCCCCHHHHHHHHHhcc
Confidence 89999999873221 446789889999999998764
|
| >1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0094 Score=43.97 Aligned_cols=94 Identities=18% Similarity=0.315 Sum_probs=63.5
Q ss_pred ceecCChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeec-ccchhhHhhcCCCCCCeEEE
Q 020623 29 VSILNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAK-DFSEDTMVLYDFDKVPALVA 99 (323)
Q Consensus 29 v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~-~~~~~~~~~~~~~~~p~ivv 99 (323)
|..+ +.++++..+...+. +++|-|+.. ...+.+++.++.+++.|...+ +...+++.++++...|++++
T Consensus 2 v~~~-~~~~~~~~~~~~~~--~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~ 78 (105)
T 1fb6_A 2 VQDV-NDSSWKEFVLESEV--PVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSIPTVLF 78 (105)
T ss_dssp CEEC-CTTTHHHHTTTCSS--CEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSSEEEE
T ss_pred ceec-hhhhHHHHHhcCCC--cEEEEEECCCChHHHHHHHHHHHHHHHhcCceEEEEEcCcchHHHHHhCCCCcccEEEE
Confidence 4556 45777776544332 567777543 246778888887767665553 23567888999989999999
Q ss_pred ecCCCCCCccccCCCCHHHHHHHHHhh
Q 020623 100 LQPSYNEHNIFYGPFDEEFLEEFIKQN 126 (323)
Q Consensus 100 ~k~~~~~~~~y~g~~~~~~L~~fI~~~ 126 (323)
++++ .....+.|..+.+.|.+||.+.
T Consensus 79 ~~~g-~~~~~~~G~~~~~~l~~~l~~~ 104 (105)
T 1fb6_A 79 FKNG-ERKESIIGAVPKSTLTDSIEKY 104 (105)
T ss_dssp EETT-EEEEEEEECCCHHHHHHHHHHH
T ss_pred EeCC-eEEEEEecCCCHHHHHHHHHhh
Confidence 9642 1222456888889999999764
|
| >2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A | Back alignment and structure |
|---|
Probab=96.65 E-value=0.021 Score=50.31 Aligned_cols=104 Identities=11% Similarity=0.207 Sum_probs=75.3
Q ss_pred CCeeecChhhHHHhhcCCCcEEEEEE--eCCChhHHHHHHHHHHHHHHhC---CC-eEEEEEcCcc-----hhhHhhhcC
Q 020623 129 PLSVPINQDTLNLLKDDKRKIVLAIV--EDETEEKSQKLVTTLKAAASAN---RE-LVFCYVGIKQ-----FADFADTFE 197 (323)
Q Consensus 129 Plv~~~t~~~~~~~~~~~~~~v~~f~--~~~~~e~~~~~~~~l~~~A~~~---~~-l~F~~vd~~~-----~~~~~~~~g 197 (323)
+.+..+|..||..+...++++++-|+ .. .=. +...+.++|+.+ .+ +.|+.+|+++ .+.+++.||
T Consensus 16 ~~v~~Lt~~nF~~vi~~~~~vlV~Fy~~Ap--WCg---l~P~~e~lA~~~~~~~~~v~~akVD~d~~g~~~n~~la~~~~ 90 (248)
T 2c0g_A 16 TGCVDLDELSFEKTVERFPYSVVKFDIASP--YGE---KHEAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGDRYK 90 (248)
T ss_dssp TTCEECCTTTHHHHHTTSSEEEEEEEESSC--CSH---HHHHHHHHHHHHHHHCSSEEEEEEEECSSTTCTTHHHHHHTT
T ss_pred CCcEECCHHHHHHHHhcCCCEEEEEECCCC--CCc---cHHHHHHHHHHHhccCCCeEEEEEECCcccccccHHHHHHhC
Confidence 45888999999988777777777777 32 211 667888888887 33 9999999887 667899999
Q ss_pred CcCCCCCCeEEEEeCCc-c-eeeccCCCCCCCCCCHHHHHHHHHHHHc
Q 020623 198 ANKKSKLPKMVVWDGNE-N-YLTVIGSESIDEEDQGSQISRFLEGYRE 243 (323)
Q Consensus 198 l~~~~~~P~ivI~~~~~-k-Y~~~~~~~~~~~~~t~~~I~~Fi~~~~~ 243 (323)
+ ....+|.++++. .. + ..... ..+..+.+.|.+||+....
T Consensus 91 V-~~~~~PTl~~F~-G~~~~~~~y~----~~G~~~~~~L~~fi~~~~~ 132 (248)
T 2c0g_A 91 V-DDKNFPSIFLFK-GNADEYVQLP----SHVDVTLDNLKAFVSANTP 132 (248)
T ss_dssp C-CTTSCCEEEEES-SSSSSEEECC----TTSCCCHHHHHHHHHHHSS
T ss_pred C-CcCCCCeEEEEe-CCcCcceeec----ccCCCCHHHHHHHHHHhhc
Confidence 9 433899999887 32 1 11110 0234788999999998754
|
| >1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A | Back alignment and structure |
|---|
Probab=96.64 E-value=0.017 Score=46.02 Aligned_cols=107 Identities=17% Similarity=0.245 Sum_probs=72.0
Q ss_pred ChhhHHH-hhc-CCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC-eEEEEEcCcchhhHhhhcCCcCCCCCCeEEEEe
Q 020623 135 NQDTLNL-LKD-DKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWD 211 (323)
Q Consensus 135 t~~~~~~-~~~-~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~-l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI~~ 211 (323)
+.+++.. +.. .++++++.|... -=..-..+...|.++++++++ +.|+.+|.+..+.+++.||+ ...|.++++.
T Consensus 10 ~~~~~~~~v~~~~~k~vlv~F~a~-wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~i---~~~Pt~~~~~ 85 (142)
T 1qgv_A 10 NGWQVDQAILSEEDRVVVIRFGHD-WDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYEL---YDPCTVMFFF 85 (142)
T ss_dssp SHHHHHHHHHTCSSSEEEEEEECT-TSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTCCTTTTSSCS---CSSCEEEEEE
T ss_pred CHHHHHHHHHhcCCCEEEEEEECC-CCHHHHHHHHHHHHHHHHhCCCeEEEEEccccCHHHHHHcCC---CCCCEEEEEE
Confidence 4566764 333 467777777653 123345677889999999976 99999999987788889999 5799999886
Q ss_pred CCcceeeccCCC---CCCCCC-CHHHHHHHHHHHHcCc
Q 020623 212 GNENYLTVIGSE---SIDEED-QGSQISRFLEGYREGR 245 (323)
Q Consensus 212 ~~~kY~~~~~~~---~~~~~~-t~~~I~~Fi~~~~~Gk 245 (323)
..+......|.. .+.+.+ +.+.+.++|+.+++|.
T Consensus 86 ~G~~v~~~~g~~~~~~~~g~~~~~~~l~~~i~~~~~~~ 123 (142)
T 1qgv_A 86 RNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETVYRGA 123 (142)
T ss_dssp TTEEEEEECC------CCSCCSCHHHHHHHHHHHHHHH
T ss_pred CCcEEEEecCCCCcceeeeecCcHHHHHHHHHHHHHHH
Confidence 543221111100 112334 3789999999998874
|
| >2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6 | Back alignment and structure |
|---|
Probab=96.64 E-value=0.007 Score=52.26 Aligned_cols=109 Identities=20% Similarity=0.331 Sum_probs=74.5
Q ss_pred CCCeeec-ChhhHHHhhc-C--CCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCCeEEEEEcCcchhhHhhhcCCcCCCC
Q 020623 128 LPLSVPI-NQDTLNLLKD-D--KRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSK 203 (323)
Q Consensus 128 ~Plv~~~-t~~~~~~~~~-~--~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~l~F~~vd~~~~~~~~~~~gl~~~~~ 203 (323)
+..|.++ +.+++..... . ++++++.|+.. .-..-..+...|.++|++|+++.|+.+|++ .+.++..|++ ..
T Consensus 98 ~g~v~~i~~~~~f~~~v~~~~~~k~vvV~F~a~-wC~~C~~l~p~l~~la~~~~~v~f~~vd~~-~~~l~~~~~i---~~ 172 (217)
T 2trc_P 98 YGFVYELETGEQFLETIEKEQKVTTIVVNIYED-GVRGCDALNSSLECLAAEYPMVKFCKIRAS-NTGAGDRFSS---DV 172 (217)
T ss_dssp CCSEEECCSHHHHHHHHHHSCTTCEEEEEEECT-TSTTHHHHHHHHHHHHTTCTTSEEEEEEHH-HHTCSTTSCG---GG
T ss_pred CCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECC-CCccHHHHHHHHHHHHHHCCCeEEEEEECC-cHHHHHHCCC---CC
Confidence 3457788 7888887653 3 26777777653 223456777899999999988999999988 5567778888 57
Q ss_pred CCeEEEEeCCcceeeccCCCC-CCCCCCHHHHHHHHHHH
Q 020623 204 LPKMVVWDGNENYLTVIGSES-IDEEDQGSQISRFLEGY 241 (323)
Q Consensus 204 ~P~ivI~~~~~kY~~~~~~~~-~~~~~t~~~I~~Fi~~~ 241 (323)
+|.++++.....-....|... ...+++.+.|..||..+
T Consensus 173 ~PTl~~~~~G~~v~~~~G~~~~~g~~~~~~~Le~~L~~~ 211 (217)
T 2trc_P 173 LPTLLVYKGGELISNFISVAEQFAEDFFAADVESFLNEY 211 (217)
T ss_dssp CSEEEEEETTEEEEEETTGGGGSCSSCCHHHHHHHHHTT
T ss_pred CCEEEEEECCEEEEEEeCCcccCcccCCHHHHHHHHHHc
Confidence 899998874321111123222 13457789999999864
|
| >1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0082 Score=45.08 Aligned_cols=94 Identities=15% Similarity=0.191 Sum_probs=64.2
Q ss_pred CceecCChHHHHHHH-HhcCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeec-ccchhhHhhcCCCCCCeE
Q 020623 28 DVSILNSDAEVSDFV-ENAGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAK-DFSEDTMVLYDFDKVPAL 97 (323)
Q Consensus 28 ~v~~i~s~~~l~~fl-~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~-~~~~~~~~~~~~~~~p~i 97 (323)
.|..+++ +++...+ +.+. +++|-|... ...+.+++.++.+.+.|...+ +.+.+++.++++...|++
T Consensus 6 ~v~~l~~-~~~~~~~~~~~~---~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~ 81 (112)
T 1t00_A 6 TLKHVTD-DSFEQDVLKNDK---PVLVDFWAAWCGPCRQIAPSLEAIAAEYGDKIEIVKLNIDENPGTAAKYGVMSIPTL 81 (112)
T ss_dssp CCEEECT-TTHHHHTTTCSS---CEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSSEE
T ss_pred eEEecch-hhHHHHHhhCCC---eEEEEEECCCCHhHHhcCHHHHHHHHHhcCCeEEEEEEcCCCHHHHHhCCCCcccEE
Confidence 4677854 6665544 3443 567777543 246788888887677676553 235678889999899999
Q ss_pred EEecCCCCCCccccCCCCHHHHHHHHHhh
Q 020623 98 VALQPSYNEHNIFYGPFDEEFLEEFIKQN 126 (323)
Q Consensus 98 vv~k~~~~~~~~y~g~~~~~~L~~fI~~~ 126 (323)
++++++ .....+.|..+.+.|.+||.+.
T Consensus 82 ~~~~~G-~~~~~~~G~~~~~~l~~~l~~~ 109 (112)
T 1t00_A 82 NVYQGG-EVAKTIVGAKPKAAIVRDLEDF 109 (112)
T ss_dssp EEEETT-EEEEEEESCCCHHHHHHHTHHH
T ss_pred EEEeCC-EEEEEEeCCCCHHHHHHHHHHH
Confidence 999642 1223466888889999999764
|
| >3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.02 Score=42.98 Aligned_cols=93 Identities=12% Similarity=0.205 Sum_probs=63.4
Q ss_pred ceecCChHHHHHHHHh---cCCcccEEEEecCC--------hhHHHHHHHhhc-CceeEEeec-ccchhhHhhcCCCCCC
Q 020623 29 VSILNSDAEVSDFVEN---AGTFFPLFIGFGLD--------ESVMSNLALKYK-KKAWFAVAK-DFSEDTMVLYDFDKVP 95 (323)
Q Consensus 29 v~~i~s~~~l~~fl~~---~~~~~~~vVgf~~~--------~~~f~~~A~~~~-~~~~F~~~~-~~~~~~~~~~~~~~~p 95 (323)
|..|++.+++++.+.. +. +++|-|... ...+.+++.++. ..+.|...+ +...+++.++++...|
T Consensus 2 v~~i~~~~~~~~~~~~~~~~~---~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P 78 (112)
T 3d6i_A 2 VIEINDQEQFTYLTTTAAGDK---LIVLYFHTSWAEPCKALKQVFEAISNEPSNSNVSFLSIDADENSEISELFEISAVP 78 (112)
T ss_dssp EEEECCHHHHHHHHTTTTTTC---CEEEEEECCC--CHHHHHHHHHHHHHCGGGTTSEEEEEETTTCHHHHHHTTCCSSS
T ss_pred ccccCCHHHHHHHHhcccCCC---EEEEEEECCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEecccCHHHHHHcCCCccc
Confidence 6778888999998875 33 567777542 246778888752 346665553 2356788899998999
Q ss_pred eEEEecCCCCCCccccCCCCHHHHHHHHHhh
Q 020623 96 ALVALQPSYNEHNIFYGPFDEEFLEEFIKQN 126 (323)
Q Consensus 96 ~ivv~k~~~~~~~~y~g~~~~~~L~~fI~~~ 126 (323)
++++|+++ .....+.|. ..++|.+||.+.
T Consensus 79 t~~~~~~G-~~~~~~~G~-~~~~l~~~l~~~ 107 (112)
T 3d6i_A 79 YFIIIHKG-TILKELSGA-DPKEYVSLLEDC 107 (112)
T ss_dssp EEEEEETT-EEEEEECSC-CHHHHHHHHHHH
T ss_pred EEEEEECC-EEEEEecCC-CHHHHHHHHHHH
Confidence 99999642 122235576 455699999765
|
| >2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A | Back alignment and structure |
|---|
Probab=96.58 E-value=0.026 Score=44.07 Aligned_cols=91 Identities=9% Similarity=0.099 Sum_probs=62.3
Q ss_pred CCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC-eEEEEEcCcc---------------------------hhhHhhhc
Q 020623 145 DKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQ---------------------------FADFADTF 196 (323)
Q Consensus 145 ~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~-l~F~~vd~~~---------------------------~~~~~~~~ 196 (323)
.++++++.|.... =..-......|.++++++++ +.|+.++.+. ...+.+.|
T Consensus 28 ~gk~~lv~f~~~~-C~~C~~~~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 106 (148)
T 2b5x_A 28 GEKPTLIHFWSIS-CHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSEDDLDPGKIKETAAEHDITQPIFVDSDHALTDAF 106 (148)
T ss_dssp TTSCEEEEEECTT-CHHHHHHHHHHHHHHHHHTTTSEEEEEECCCSTTTSSHHHHHHHHHHTTCCSCEEECSSCHHHHHT
T ss_pred CCCEEEEEEEcCC-CHHHHHHhHHHHHHHHHhcCCcEEEEEEcCCCccccCHHHHHHHHHHcCCCcceEECCchhHHHHh
Confidence 4577777776532 22345667788888888887 8888887431 23466778
Q ss_pred CCcCCCCCCeEEEEeCCcceeeccCCCCCCCCCCHHHHHHHHHHHHcC
Q 020623 197 EANKKSKLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEGYREG 244 (323)
Q Consensus 197 gl~~~~~~P~ivI~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~~~~~G 244 (323)
|+ ...|.++++|.+++..... .+..+.+.+.++|+.++++
T Consensus 107 ~v---~~~P~~~lid~~G~i~~~~-----~g~~~~~~l~~~l~~~l~~ 146 (148)
T 2b5x_A 107 EN---EYVPAYYVFDKTGQLRHFQ-----AGGSGMKMLEKRVNRVLAE 146 (148)
T ss_dssp CC---CCSSEEEEECTTCBEEEEE-----ESCSTTHHHHHHHHHHHTT
T ss_pred CC---CCCCEEEEECCCCcEEEEe-----cCCCCHHHHHHHHHHHHhc
Confidence 88 5789999999876432210 1235778999999998875
|
| >2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.58 E-value=0.01 Score=45.97 Aligned_cols=106 Identities=5% Similarity=0.082 Sum_probs=66.8
Q ss_pred eecChhhHHHhh----cCCCcEEEEEEeCCChhHHHHHHHHH---HHHHHhCCC-eEEEEEcCc--chhhHhhhcCCcCC
Q 020623 132 VPINQDTLNLLK----DDKRKIVLAIVEDETEEKSQKLVTTL---KAAASANRE-LVFCYVGIK--QFADFADTFEANKK 201 (323)
Q Consensus 132 ~~~t~~~~~~~~----~~~~~~v~~f~~~~~~e~~~~~~~~l---~~~A~~~~~-l~F~~vd~~--~~~~~~~~~gl~~~ 201 (323)
..++..++.... ..++++++.|...- =..-..+...+ ..+++.+++ +.++.+|.+ ....+++.||+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~k~vlv~f~a~w-C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~v--- 84 (130)
T 2kuc_A 9 IAFRELSFPEALKRAEVEDKLLFVDCFTTW-CGPCKRLSKVVFKDSLVADYFNRHFVNLKMDMEKGEGVELRKKYGV--- 84 (130)
T ss_dssp CCCBCCCHHHHHHHHHHHSSCEEEEECCTT-CTHHHHHHHHGGGCHHHHHHHHHHSEEEEECSSSTTHHHHHHHTTC---
T ss_pred CCcccCCHHHHHHHHHhcCCeEEEEEECCC-CccHHHHHHHhcCcHHHHHHHhcCeEEEEEecCCcchHHHHHHcCC---
Confidence 334555555433 24577777676521 11223444455 455555544 888889987 35678889999
Q ss_pred CCCCeEEEEeCCccee-eccCCCCCCCCCCHHHHHHHHHHHHcCccc
Q 020623 202 SKLPKMVVWDGNENYL-TVIGSESIDEEDQGSQISRFLEGYREGRTE 247 (323)
Q Consensus 202 ~~~P~ivI~~~~~kY~-~~~~~~~~~~~~t~~~I~~Fi~~~~~Gkl~ 247 (323)
...|.+++++.+++.. .. .+..+.+.|.+||+..+.+.-.
T Consensus 85 ~~~Pt~~~~d~~G~~~~~~------~G~~~~~~l~~~l~~~~~~~~~ 125 (130)
T 2kuc_A 85 HAYPTLLFINSSGEVVYRL------VGAEDAPELLKKVKLGVESEGH 125 (130)
T ss_dssp CSSCEEEEECTTSCEEEEE------ESCCCHHHHHHHHHHHHSCCC-
T ss_pred CCCCEEEEECCCCcEEEEe------cCCCCHHHHHHHHHHHHHhccc
Confidence 5799999998765422 11 2345788999999999876543
|
| >2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.011 Score=46.03 Aligned_cols=95 Identities=20% Similarity=0.308 Sum_probs=65.1
Q ss_pred CceecCChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeec-ccchhhHhhcCCCCCCeEE
Q 020623 28 DVSILNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAK-DFSEDTMVLYDFDKVPALV 98 (323)
Q Consensus 28 ~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~-~~~~~~~~~~~~~~~p~iv 98 (323)
.+..++ .+++++.+...+. +++|-|+.. ...+.+++..+.+++.|..++ +...+++.++++...|+++
T Consensus 23 ~v~~l~-~~~f~~~~~~~~k--~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~ 99 (128)
T 2o8v_B 23 KIIHLT-DDSFDTDVLKADG--AILVDFWAEWCGPAKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLL 99 (128)
T ss_dssp CSEEEC-TTTHHHHTTTCSS--EEEEEEECSSCHHHHHTHHHHHHHHHHTTTTEEEEEEETTTCCTTSGGGTCCSSSEEE
T ss_pred ccEecC-hhhHHHHHHhcCC--EEEEEEECCCCHHHHHHhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCccCEEE
Confidence 467774 5777765433332 567777543 247788999887777776553 2355678899998899999
Q ss_pred EecCCCCCCccccCCCCHHHHHHHHHhh
Q 020623 99 ALQPSYNEHNIFYGPFDEEFLEEFIKQN 126 (323)
Q Consensus 99 v~k~~~~~~~~y~g~~~~~~L~~fI~~~ 126 (323)
+|+++ .....+.|..+.+.|.+||.+.
T Consensus 100 ~~~~G-~~~~~~~G~~~~~~l~~~l~~~ 126 (128)
T 2o8v_B 100 LFKNG-EVAATKVGALSKGQLKEFLDAN 126 (128)
T ss_dssp EEETT-EEEEEEESCCCHHHHHHHHHHH
T ss_pred EEeCC-EEEEEEcCCCCHHHHHHHHHHh
Confidence 99532 1223466888899999999864
|
| >1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.00066 Score=52.76 Aligned_cols=104 Identities=9% Similarity=0.148 Sum_probs=66.3
Q ss_pred eeec-ChhhHHHhhc----CCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCCeEEEEEcCcchhhHhhhcCCcCCCCCC
Q 020623 131 SVPI-NQDTLNLLKD----DKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLP 205 (323)
Q Consensus 131 v~~~-t~~~~~~~~~----~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~l~F~~vd~~~~~~~~~~~gl~~~~~~P 205 (323)
+.++ +.+++..... .++++++.|.... -..-..+...|.+++++++++.|+.+|.+....+++.||+ ...|
T Consensus 16 ~~~i~~~~~~~~~l~~~~~~~~~~vv~f~~~~-C~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~~~~~~~~v---~~~P 91 (130)
T 1wmj_A 16 VIACHNKDEFDAQMTKAKEAGKVVIIDFTASW-CGPCRFIAPVFAEYAKKFPGAVFLKVDVDELKEVAEKYNV---EAMP 91 (130)
T ss_dssp SBCCSSSHHHHHHHHHHHTTTCBCBEECCSSS-CSCSSSSHHHHHHHHHHCTTBCCEECCTTTSGGGHHHHTC---CSSC
T ss_pred eEEcCCHHHHHHHHHHHhhcCCEEEEEEECCC-ChhHHHHHHHHHHHHHHCCCCEEEEEeccchHHHHHHcCC---Cccc
Confidence 4444 3455554332 3566666665421 0111234456788889988899999999887788899999 5789
Q ss_pred eEEEEeCCcce-eeccCCCCCCCCCCHHHHHHHHHHHHcCcc
Q 020623 206 KMVVWDGNENY-LTVIGSESIDEEDQGSQISRFLEGYREGRT 246 (323)
Q Consensus 206 ~ivI~~~~~kY-~~~~~~~~~~~~~t~~~I~~Fi~~~~~Gkl 246 (323)
.++++. +++. ... .+ .+.+.|.+||++++....
T Consensus 92 t~~~~~-~g~~~~~~------~g-~~~~~l~~~l~~~~~~~~ 125 (130)
T 1wmj_A 92 TFLFIK-DGAEADKV------VG-ARKDDLQNTIVKHVGATA 125 (130)
T ss_dssp CCCBCT-TTTCCBCC------CT-TCTTTHHHHHHHHTSSSC
T ss_pred eEEEEe-CCeEEEEE------eC-CCHHHHHHHHHHHHhccC
Confidence 988763 3321 111 12 466789999999887543
|
| >3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.015 Score=44.43 Aligned_cols=95 Identities=12% Similarity=0.071 Sum_probs=65.2
Q ss_pred CceecCChHHHHH-HHHhcCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeec-ccchhhHhhcCCCCCCeE
Q 020623 28 DVSILNSDAEVSD-FVENAGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAK-DFSEDTMVLYDFDKVPAL 97 (323)
Q Consensus 28 ~v~~i~s~~~l~~-fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~-~~~~~~~~~~~~~~~p~i 97 (323)
.+..++ .+++++ +++.+. +++|-|... ...+.+++.++.+++.|...+ +...+++.++++...|++
T Consensus 4 ~v~~l~-~~~f~~~~~~~~~---~~lv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~ 79 (122)
T 3aps_A 4 ASIDLT-PQTFNEKVLQGKT---HWVVDFYAPWCGPCQNFAPEFELLARMIKGKVRAGKVDCQAYPQTCQKAGIKAYPSV 79 (122)
T ss_dssp CSEECC-HHHHHHHTTTCSS---CEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTCHHHHHHTTCCSSSEE
T ss_pred chhcCC-HHHHHHHHhcCCC---eEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCcCCHHHHHHcCCCccceE
Confidence 467774 677754 444444 567777543 246788898888777776653 235678889999999999
Q ss_pred EEecCCCCCCccccC----CCCHHHHHHHHHhhc
Q 020623 98 VALQPSYNEHNIFYG----PFDEEFLEEFIKQNF 127 (323)
Q Consensus 98 vv~k~~~~~~~~y~g----~~~~~~L~~fI~~~~ 127 (323)
++|+++ +....+.| ..+.+.|.+||....
T Consensus 80 ~~~~~~-~~~~~~~g~~~~~~~~~~l~~~l~~~l 112 (122)
T 3aps_A 80 KLYQYE-RAKKSIWEEQINSRDAKTIAALIYGKL 112 (122)
T ss_dssp EEEEEE-GGGTEEEEEEECCSCHHHHHHHHHHHH
T ss_pred EEEeCC-CccceeeccccCcCCHHHHHHHHHHHH
Confidence 999753 22223444 378899999998653
|
| >1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=96.51 E-value=0.033 Score=42.85 Aligned_cols=91 Identities=12% Similarity=0.071 Sum_probs=61.3
Q ss_pred CCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCCeEEEEEcCcc----------------------hhhHhhhcCCcCCC
Q 020623 145 DKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQ----------------------FADFADTFEANKKS 202 (323)
Q Consensus 145 ~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~l~F~~vd~~~----------------------~~~~~~~~gl~~~~ 202 (323)
.++++++.|... .=..-......|.+++++++++.|+.++.+. ...+.+.||+ .
T Consensus 23 ~~k~~lv~f~~~-~C~~C~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i---~ 98 (136)
T 1lu4_A 23 QGKPAVLWFWTP-WCPFCNAEAPSLSQVAAANPAVTFVGIATRADVGAMQSFVSKYNLNFTNLNDADGVIWARYNV---P 98 (136)
T ss_dssp TTSCEEEEEECT-TCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCHHHHHHHHHHHTCCSEEEECTTSHHHHHTTC---C
T ss_pred CCCEEEEEEECC-cChhHHHHHHHHHHHHHHCCCcEEEEEEcCCCHHHHHHHHHHcCCCceEEECCchhHHHhcCC---C
Confidence 357887777753 2223456677888999998888888877654 2345667788 5
Q ss_pred CCCeEEEEeCCcceeeccCCCCCCCCCCHHHHHHHHHHHH
Q 020623 203 KLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEGYR 242 (323)
Q Consensus 203 ~~P~ivI~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~~~~ 242 (323)
..|.++++|.+++.....+ ..+..+.+.|.++++.++
T Consensus 99 ~~P~~~lid~~G~i~~~~~---~~g~~~~~~l~~~l~~ll 135 (136)
T 1lu4_A 99 WQPAFVFYRADGTSTFVNN---PTAAMSQDELSGRVAALT 135 (136)
T ss_dssp SSSEEEEECTTSCEEEECC---SSSCCCHHHHHHHHHHC-
T ss_pred CCCEEEEECCCCcEEEEEc---CCCccCHHHHHHHHHHHh
Confidence 6899999998775432210 014567899999998764
|
| >1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C | Back alignment and structure |
|---|
Probab=96.48 E-value=0.021 Score=50.32 Aligned_cols=109 Identities=21% Similarity=0.312 Sum_probs=74.8
Q ss_pred CCCeeec-ChhhHHHhhc---CCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCCeEEEEEcCcchhhHhhhcCCcCCCC
Q 020623 128 LPLSVPI-NQDTLNLLKD---DKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSK 203 (323)
Q Consensus 128 ~Plv~~~-t~~~~~~~~~---~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~l~F~~vd~~~~~~~~~~~gl~~~~~ 203 (323)
+..|.++ +.+++..... .++++++.|+.. .-..-..+...|.++|++|+++.|+.+|++. ..++..|++ ..
T Consensus 111 ~G~V~ei~s~~~f~~~v~~~~~~k~VvV~Fya~-wC~~Ck~l~p~l~~La~~~~~v~f~kVd~d~-~~l~~~~~I---~~ 185 (245)
T 1a0r_P 111 YGFVYELESGEQFLETIEKEQKITTIVVHIYED-GIKGCDALNSSLICLAAEYPMVKFCKIKASN-TGAGDRFSS---DV 185 (245)
T ss_dssp CCSEEECCSHHHHHHHHHSSCTTCEEEEEEECT-TSTTHHHHHHHHHHHHHHCTTSEEEEEEHHH-HCCTTSSCT---TT
T ss_pred CCeEEEeCCHHHHHHHHHHhcCCCEEEEEEECC-CChHHHHHHHHHHHHHHHCCCCEEEEEeCCc-HHHHHHCCC---CC
Confidence 4467888 6888887653 256777777653 2233467778999999999999999999875 556778888 57
Q ss_pred CCeEEEEeCCcceeeccCCCCC-CCCCCHHHHHHHHHHH
Q 020623 204 LPKMVVWDGNENYLTVIGSESI-DEEDQGSQISRFLEGY 241 (323)
Q Consensus 204 ~P~ivI~~~~~kY~~~~~~~~~-~~~~t~~~I~~Fi~~~ 241 (323)
+|.++++..........|.... ...++.+.|..||...
T Consensus 186 ~PTll~~~~G~~v~~~vG~~~~~g~~~~~e~Le~~L~~~ 224 (245)
T 1a0r_P 186 LPTLLVYKGGELLSNFISVTEQLAEEFFTGDVESFLNEY 224 (245)
T ss_dssp CSEEEEEETTEEEEEETTGGGGSCTTCCHHHHHHHHHTT
T ss_pred CCEEEEEECCEEEEEEeCCcccccccccHHHHHHHHHHc
Confidence 9999888743221112232221 2347888999999875
|
| >3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0099 Score=45.85 Aligned_cols=88 Identities=9% Similarity=0.018 Sum_probs=61.2
Q ss_pred CceecCChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeec--c---cchhhHhhcCCCC-
Q 020623 28 DVSILNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAK--D---FSEDTMVLYDFDK- 93 (323)
Q Consensus 28 ~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~--~---~~~~~~~~~~~~~- 93 (323)
....|+|.++++++++.+. +++|-|... ...|++++.. .++.|...+ . .|.+++.++++.+
T Consensus 7 ~~~~i~s~e~f~~ii~~~~---~vvi~khatwCgpc~~~~~~~e~~~~~--~~v~~~~vdVde~r~~Sn~IA~~~~V~h~ 81 (112)
T 3iv4_A 7 VAIKLSSIDQFEQVIEENK---YVFVLKHSETCPISANAYDQFNKFLYE--RDMDGYYLIVQQERDLSDYIAKKTNVKHE 81 (112)
T ss_dssp CEEECCSHHHHHHHHHHCS---EEEEEEECTTCHHHHHHHHHHHHHHHH--HTCCEEEEEGGGGHHHHHHHHHHHTCCCC
T ss_pred ceeecCCHHHHHHHHhcCC---CEEEEEECCcCHhHHHHHHHHHHHhcc--CCceEEEEEeecCchhhHHHHHHhCCccC
Confidence 3578999999999998865 677777542 2367777764 456565542 1 2345889999984
Q ss_pred CCeEEEecCCCCCCccc---cCCCCHHHHHHHH
Q 020623 94 VPALVALQPSYNEHNIF---YGPFDEEFLEEFI 123 (323)
Q Consensus 94 ~p~ivv~k~~~~~~~~y---~g~~~~~~L~~fI 123 (323)
.|++++|++ +..++ .+..+.+.|++.+
T Consensus 82 sPq~il~k~---G~~v~~~SH~~I~~~~l~~~~ 111 (112)
T 3iv4_A 82 SPQAFYFVN---GEMVWNRDHGDINVSSLAQAE 111 (112)
T ss_dssp SSEEEEEET---TEEEEEEEGGGCSHHHHHHHT
T ss_pred CCeEEEEEC---CEEEEEeeccccCHHHHHHhh
Confidence 899999996 33333 3677888887764
|
| >1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.35 E-value=0.015 Score=45.82 Aligned_cols=94 Identities=17% Similarity=0.166 Sum_probs=55.6
Q ss_pred CceecCChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeec-ccchhhHhhcCCCCCCeEE
Q 020623 28 DVSILNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAK-DFSEDTMVLYDFDKVPALV 98 (323)
Q Consensus 28 ~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~-~~~~~~~~~~~~~~~p~iv 98 (323)
.+..+ +.++++..+..++. ++|-|+.. ...+.+++.++.+++.|..++ +...+++.+|++...|+++
T Consensus 34 ~v~~l-~~~~~~~~~~~~~~---vvv~f~~~~C~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~ 109 (140)
T 1v98_A 34 WVVEA-DEKGFAQEVAGAPL---TLVDFFAPWCGPCRLVSPILEELARDHAGRLKVVKVNVDEHPGLAARYGVRSVPTLV 109 (140)
T ss_dssp ----------------CCCE---EEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCHHHHHHTTCCSSSEEE
T ss_pred ccccC-CHHHHHHHHHcCCC---EEEEEECCCCHHHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHCCCCccCEEE
Confidence 35566 45777777766652 45656542 246788898887677776653 2356788899998999999
Q ss_pred EecCCCCCCccccCCCCHHHHHHHHHhh
Q 020623 99 ALQPSYNEHNIFYGPFDEEFLEEFIKQN 126 (323)
Q Consensus 99 v~k~~~~~~~~y~g~~~~~~L~~fI~~~ 126 (323)
+|+++ .....+.|..+.+.|.+||...
T Consensus 110 ~~~~G-~~~~~~~G~~~~~~l~~~i~~~ 136 (140)
T 1v98_A 110 LFRRG-APVATWVGASPRRVLEERLRPY 136 (140)
T ss_dssp EEETT-EEEEEEESCCCHHHHHHHHHHH
T ss_pred EEeCC-cEEEEEeCCCCHHHHHHHHHHH
Confidence 99642 1223467888899999999865
|
| >1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A | Back alignment and structure |
|---|
Probab=96.32 E-value=0.05 Score=41.67 Aligned_cols=89 Identities=15% Similarity=0.073 Sum_probs=60.6
Q ss_pred CCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCCeEEEEEcCcc-----------------------hhhHhhhcCCcCC
Q 020623 145 DKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQ-----------------------FADFADTFEANKK 201 (323)
Q Consensus 145 ~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~l~F~~vd~~~-----------------------~~~~~~~~gl~~~ 201 (323)
.++++++.|... .=..-......|++++++++++.|+.++.+. ...+.+.||+
T Consensus 24 ~~k~~ll~f~~~-~C~~C~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i--- 99 (136)
T 1zzo_A 24 LGKPAVLWFWAP-WCPTCQGEAPVVGQVAASHPEVTFVGVAGLDQVPAMQEFVNKYPVKTFTQLADTDGSVWANFGV--- 99 (136)
T ss_dssp TTSCEEEEEECT-TCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCHHHHHHHHHHTTCTTSEEEECTTCHHHHHTTC---
T ss_pred CCCeEEEEEEcC-CChhHHHHHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHHcCCCceEEEEcCCcHHHHHcCC---
Confidence 457777777753 2233456678888999988887777777642 1235567777
Q ss_pred CCCCeEEEEeCCcceeeccCCCCCCCCCCHHHHHHHHHHHHc
Q 020623 202 SKLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEGYRE 243 (323)
Q Consensus 202 ~~~P~ivI~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~~~~~ 243 (323)
...|.+++++.+++.... .+..+.+.|.++++.+++
T Consensus 100 ~~~P~~~~id~~g~i~~~------~g~~~~~~l~~~l~~~l~ 135 (136)
T 1zzo_A 100 TQQPAYAFVDPHGNVDVV------RGRMSQDELTRRVTALTS 135 (136)
T ss_dssp CSSSEEEEECTTCCEEEE------ESCCCHHHHHHHHHHHC-
T ss_pred CCCceEEEECCCCCEEEE------ecCCCHHHHHHHHHHHhc
Confidence 578999999987754322 234678999999988753
|
| >3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.30 E-value=0.017 Score=45.40 Aligned_cols=102 Identities=12% Similarity=0.146 Sum_probs=68.8
Q ss_pred CeeecCh-hhHHHhhcC--CCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCCeEEEEEcCcchhhHhhhcCCcCCCCCCe
Q 020623 130 LSVPINQ-DTLNLLKDD--KRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPK 206 (323)
Q Consensus 130 lv~~~t~-~~~~~~~~~--~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~l~F~~vd~~~~~~~~~~~gl~~~~~~P~ 206 (323)
.+.+++. +++..++.. ++++++.|... .=..-..+...|.++++++ ++.|+.+|.+....+++.||+ ..+|.
T Consensus 21 ~v~~l~~~~~~~~~l~~~~~k~vvv~F~a~-wC~~C~~~~p~l~~l~~~~-~v~~~~vd~~~~~~l~~~~~v---~~~Pt 95 (133)
T 3cxg_A 21 IYIELKNTGSLNQVFSSTQNSSIVIKFGAV-WCKPCNKIKEYFKNQLNYY-YVTLVDIDVDIHPKLNDQHNI---KALPT 95 (133)
T ss_dssp EEEECCCTTHHHHHHTC-CCSEEEEEEECT-TCHHHHHTHHHHHGGGGTE-ECEEEEEETTTCHHHHHHTTC---CSSSE
T ss_pred cEEEecChhHHHHHHHhcCCCEEEEEEECC-CCHHHHHHHHHHHHHHHhc-CEEEEEEeccchHHHHHhcCC---CCCCE
Confidence 3555653 667666554 35777767652 1122345666788888777 599999999888888889999 57999
Q ss_pred EEEEe-CCcc----eeeccCCCCCCCCCCHHHHHHHHHHHHcC
Q 020623 207 MVVWD-GNEN----YLTVIGSESIDEEDQGSQISRFLEGYREG 244 (323)
Q Consensus 207 ivI~~-~~~k----Y~~~~~~~~~~~~~t~~~I~~Fi~~~~~G 244 (323)
++++. .+++ ... . + .+.+.|.++|+.++..
T Consensus 96 ~~~~~~~~g~g~~~~~~-~------G-~~~~~l~~~l~~~l~~ 130 (133)
T 3cxg_A 96 FEFYFNLNNEWVLVHTV-E------G-ANQNDIEKAFQKYCLE 130 (133)
T ss_dssp EEEEEEETTEEEEEEEE-E------S-CCHHHHHHHHHHHSEE
T ss_pred EEEEEecCCCeEEEEEE-c------C-CCHHHHHHHHHHHHHh
Confidence 99883 2332 222 1 2 3688999999988654
|
| >2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.30 E-value=0.01 Score=51.95 Aligned_cols=101 Identities=12% Similarity=0.139 Sum_probs=69.4
Q ss_pred hhHHHhhc-CCCcEEEEEEeCCC-hhHHHHHHHHHHHHHHhCCC------eEEEEEcCcchhhHhhhcCCcCCCCCCeEE
Q 020623 137 DTLNLLKD-DKRKIVLAIVEDET-EEKSQKLVTTLKAAASANRE------LVFCYVGIKQFADFADTFEANKKSKLPKMV 208 (323)
Q Consensus 137 ~~~~~~~~-~~~~~v~~f~~~~~-~e~~~~~~~~l~~~A~~~~~------l~F~~vd~~~~~~~~~~~gl~~~~~~P~iv 208 (323)
..+..++. .++|+++.|..... -...+.+...+.++|+.+.. +.|+.+|.++.+++++.||+ ...|.++
T Consensus 15 ~ql~~~~~~~~~pv~v~~~~~~~~c~~c~~~~~~l~ela~~~~~~~~~~~v~~~~vd~d~~~~~~~~~gv---~~~Pt~~ 91 (243)
T 2hls_A 15 RELRETLAEMVNPVEVHVFLSKSGCETCEDTLRLMKLFEEESPTRNGGKLLKLNVYYRESDSDKFSEFKV---ERVPTVA 91 (243)
T ss_dssp HHHHHHHTTCCSCEEEEEEECSSSCTTHHHHHHHHHHHHHHSCEETTEESEEEEEEETTTTHHHHHHTTC---CSSSEEE
T ss_pred HHHHHHHHhCCCCEEEEEEeCCCCCCchHHHHHHHHHHHHhccCCCCCceeEEEEecCCcCHHHHHhcCC---CcCCEEE
Confidence 34445554 34688766665321 23467788899999998543 99999999988889999999 3799999
Q ss_pred EEeCCcceeeccCCCCCCCCCCHHHHHHHHHHHHcCccccc
Q 020623 209 VWDGNENYLTVIGSESIDEEDQGSQISRFLEGYREGRTEQK 249 (323)
Q Consensus 209 I~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~~~~~Gkl~~~ 249 (323)
+.+...+|. | ..+...+..|++.++++...+.
T Consensus 92 i~~g~~~~~---G------~~~~~~l~~fv~~~l~~~~~~~ 123 (243)
T 2hls_A 92 FLGGEVRWT---G------IPAGEEIRALVEVIMRLSEDES 123 (243)
T ss_dssp ETTTTEEEE---S------CCCTTHHHHHHHHHHHHHTTCC
T ss_pred EECCceeEc---C------CCcHHHHHHHHHHHHhccCCCC
Confidence 874312442 1 1245789999999886544443
|
| >2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.00097 Score=52.75 Aligned_cols=81 Identities=12% Similarity=0.261 Sum_probs=57.4
Q ss_pred CeeecChhhHHHhhcCC--CcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC--eEEEEEcCcchhhHhhhcCCcC----C
Q 020623 130 LSVPINQDTLNLLKDDK--RKIVLAIVEDETEEKSQKLVTTLKAAASANRE--LVFCYVGIKQFADFADTFEANK----K 201 (323)
Q Consensus 130 lv~~~t~~~~~~~~~~~--~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~--l~F~~vd~~~~~~~~~~~gl~~----~ 201 (323)
.+..++.+++....... +++++.|...- =..-..+...|.++|+++++ +.|+.+|.+..+.+++.|++ . .
T Consensus 8 ~v~~l~~~~f~~~~~~~~~~~vlv~f~a~w-C~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~v-~~~~~~ 85 (137)
T 2dj0_A 8 YIKYFNDKTIDEELERDKRVTWIVEFFANW-SNDCQSFAPIYADLSLKYNCTGLNFGKVDVGRYTDVSTRYKV-STSPLT 85 (137)
T ss_dssp CCEECCTTHHHHHHHHSTTSCEEEEECCTT-CSTTTTTHHHHHHHHHHHCSSSCEEEECCTTTCHHHHHHTTC-CCCSSS
T ss_pred eEEEccHhhHHHHHhcCCCCEEEEEEECCC-CHHHHHHHHHHHHHHHHhCCCCeEEEEEeCccCHHHHHHccC-cccCCc
Confidence 57788888888765433 36776666421 11123455678889999874 99999999988888889998 2 1
Q ss_pred CCCCeEEEEeC
Q 020623 202 SKLPKMVVWDG 212 (323)
Q Consensus 202 ~~~P~ivI~~~ 212 (323)
..+|.++++..
T Consensus 86 ~~~Pt~~~~~~ 96 (137)
T 2dj0_A 86 KQLPTLILFQG 96 (137)
T ss_dssp SCSSEEEEESS
T ss_pred CCCCEEEEEEC
Confidence 17999998854
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=96.27 E-value=0.02 Score=50.94 Aligned_cols=98 Identities=17% Similarity=0.349 Sum_probs=72.3
Q ss_pred CCCceecCChHHHHHHHHhc-CCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeec-ccchhhHhhcCCCCCC
Q 020623 26 APDVSILNSDAEVSDFVENA-GTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAK-DFSEDTMVLYDFDKVP 95 (323)
Q Consensus 26 ~p~v~~i~s~~~l~~fl~~~-~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~-~~~~~~~~~~~~~~~p 95 (323)
.+.|..++ .++++++++.. +. +++|-|... .+.+.+++.++.+++.|..++ +..++++.+|++...|
T Consensus 6 ~~~v~~~~-~~~f~~~~~~~~~~--~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P 82 (287)
T 3qou_A 6 VENIVNIN-ESNLQQVLEQSMTT--PVLFYFWSERSQHCLQLTPILESLAAQYNGQFILAKLDCDAEQMIAAQFGLRAIP 82 (287)
T ss_dssp CTTEEECC-TTTHHHHHTTTTTS--CEEEEEECTTCTTTTTTHHHHHHHHHHHTSSSEEEEEETTTCHHHHHTTTCCSSS
T ss_pred CCccEECC-HHHHHHHHHhcCCC--eEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEEeCccCHHHHHHcCCCCCC
Confidence 45678885 58899988652 22 577877542 357889999998777776653 2357888999999999
Q ss_pred eEEEecCCCCCCccccCCCCHHHHHHHHHhhc
Q 020623 96 ALVALQPSYNEHNIFYGPFDEEFLEEFIKQNF 127 (323)
Q Consensus 96 ~ivv~k~~~~~~~~y~g~~~~~~L~~fI~~~~ 127 (323)
++++|+++ .....|.|..+.+.|.+||....
T Consensus 83 t~~~~~~G-~~~~~~~g~~~~~~l~~~l~~~l 113 (287)
T 3qou_A 83 TVYLFQNG-QPVDGFQGPQPEEAIRALLDXVL 113 (287)
T ss_dssp EEEEEETT-EEEEEEESCCCHHHHHHHHHHHS
T ss_pred eEEEEECC-EEEEEeeCCCCHHHHHHHHHHHc
Confidence 99999642 12224678888999999999875
|
| >3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=96.23 E-value=0.1 Score=41.16 Aligned_cols=98 Identities=12% Similarity=0.093 Sum_probs=60.9
Q ss_pred CCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC--eEEEEEcCcch------------------------hhHhhhcCC
Q 020623 145 DKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE--LVFCYVGIKQF------------------------ADFADTFEA 198 (323)
Q Consensus 145 ~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~--l~F~~vd~~~~------------------------~~~~~~~gl 198 (323)
.++++++.|.... =..-......|.++++++++ +.|+.++.+.- ..++..||.
T Consensus 23 ~gk~vlv~F~a~w-C~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (151)
T 3raz_A 23 KAPVRIVNLWATW-CGPCRKEMPAMSKWYKAQKKGSVDMVGIALDTSDNIGNFLKQTPVSYPIWRYTGANSRNFMKTYGN 101 (151)
T ss_dssp CSSEEEEEEECTT-CHHHHHHHHHHHHHHHTSCTTTEEEEEEESSCHHHHHHHHHHSCCSSCEEEECCSCHHHHHHTTTC
T ss_pred CCCEEEEEEEcCc-CHHHHHHHHHHHHHHHHhccCCeEEEEEECCChHHHHHHHHHcCCCCceEecCccchHHHHHHhCC
Confidence 3567777666531 12245566788888888853 77777776421 234455662
Q ss_pred cCCCCCCeEEEEeCCcceeeccCCCCCCCCCCHHHHHHHHHHHHcCccccc
Q 020623 199 NKKSKLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEGYREGRTEQK 249 (323)
Q Consensus 199 ~~~~~~P~ivI~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~~~~~Gkl~~~ 249 (323)
.....|.++++|.+++....- .+..+.+.|.++|+.++.++-+..
T Consensus 102 -~v~~~P~~~lid~~G~i~~~~-----~g~~~~~~l~~~l~~l~~~~~~~~ 146 (151)
T 3raz_A 102 -TVGVLPFTVVEAPKCGYRQTI-----TGEVNEKSLTDAVKLAHSKCREGH 146 (151)
T ss_dssp -CSCCSSEEEEEETTTTEEEEC-----CSCCCHHHHHHHHHHHHTC-----
T ss_pred -ccCCCCEEEEECCCCcEEEEE-----CCCCCHHHHHHHHHHHHHHhhccc
Confidence 236789999999876432210 245788999999999998875543
|
| >2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis} | Back alignment and structure |
|---|
Probab=96.10 E-value=0.035 Score=42.43 Aligned_cols=98 Identities=15% Similarity=0.191 Sum_probs=65.1
Q ss_pred CCceecC-ChHHHHHHH-HhcCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeec-ccchhhHhhcCCCCCC
Q 020623 27 PDVSILN-SDAEVSDFV-ENAGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAK-DFSEDTMVLYDFDKVP 95 (323)
Q Consensus 27 p~v~~i~-s~~~l~~fl-~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~-~~~~~~~~~~~~~~~p 95 (323)
+.+..++ +.+++++.+ +.+. +++|-|... ...+.+++.++ ..+.|..++ +...+++.+|++...|
T Consensus 3 ~~v~~~~g~~~~~~~~~~~~~~---~vlv~f~a~wC~~C~~~~~~l~~l~~~~-~~v~~~~vd~~~~~~~~~~~~i~~~P 78 (118)
T 2f51_A 3 DPIVHFNGTHEALLNRIKEAPG---LVLVDFFATWCGPCQRLGQILPSIAEAN-KDVTFIKVDVDKNGNAADAYGVSSIP 78 (118)
T ss_dssp CCSEEECSCHHHHHHHHHHCSS---CEEEEEECTTCHHHHHHHHHHHHHHHHC-TTSEEEEEETTTCHHHHHHTTCCSSS
T ss_pred CcceEecCCHHHHHHHHHhCCC---EEEEEEECCCCHHHHHHHHHHHHHHHHC-CCeEEEEEECCCCHHHHHhcCCCCCC
Confidence 5677887 888998545 4444 467777543 24677888887 566666553 2356788899998999
Q ss_pred eEEEecCCC-CCCc--cccCCCCHHHHHHHHHhhcCC
Q 020623 96 ALVALQPSY-NEHN--IFYGPFDEEFLEEFIKQNFLP 129 (323)
Q Consensus 96 ~ivv~k~~~-~~~~--~y~g~~~~~~L~~fI~~~~~P 129 (323)
++++|++.. +... .+.|.. .++|+++|.++.-|
T Consensus 79 t~~~~~~~~~~G~~~~~~~G~~-~~~l~~~~~~~~~~ 114 (118)
T 2f51_A 79 ALFFVKKEGNEIKTLDQFVGAD-VSRIKADIEKFKHH 114 (118)
T ss_dssp EEEEEEEETTEEEEEEEEESCC-HHHHHHHHHHHC--
T ss_pred EEEEEeCCCCcceEEEeecCCC-HHHHHHHHHHhhhc
Confidence 999997511 1222 345654 55699999988755
|
| >3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A | Back alignment and structure |
|---|
Probab=96.09 E-value=0.043 Score=42.90 Aligned_cols=96 Identities=14% Similarity=0.225 Sum_probs=65.7
Q ss_pred CCCceecCChHHHHHHHHh----cCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeec-ccchhhHhhcCCC
Q 020623 26 APDVSILNSDAEVSDFVEN----AGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAK-DFSEDTMVLYDFD 92 (323)
Q Consensus 26 ~p~v~~i~s~~~l~~fl~~----~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~-~~~~~~~~~~~~~ 92 (323)
+..+..+.+.+++++.+.. +. +++|-|... ...+.+++.++. ++.|..++ +...+++.+|++.
T Consensus 23 ~~~~~~i~~~~~~~~~~~~~~~~~k---~vvv~f~a~wC~~C~~~~~~l~~l~~~~~-~v~~~~v~~~~~~~~~~~~~v~ 98 (139)
T 3d22_A 23 GGNVHLITTKERWDQKLSEASRDGK---IVLANFSARWCGPSRQIAPYYIELSENYP-SLMFLVIDVDELSDFSASWEIK 98 (139)
T ss_dssp CTTCEEECSHHHHHHHHHHHHHHTC---CEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEETTTSHHHHHHTTCC
T ss_pred CCcEEEeCCHHHHHHHHHHHhhcCC---EEEEEEECCCCHHHHHHHHHHHHHHHHCC-CCEEEEEeCcccHHHHHHcCCC
Confidence 3457888889999887752 33 467777543 246778888875 45555442 2356788899998
Q ss_pred CCCeEEEecCCCCCCccccCCCCHHHHHHHHHhhc
Q 020623 93 KVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQNF 127 (323)
Q Consensus 93 ~~p~ivv~k~~~~~~~~y~g~~~~~~L~~fI~~~~ 127 (323)
..|++++++++ .....+.|. +.++|.+||....
T Consensus 99 ~~Pt~~~~~~G-~~~~~~~G~-~~~~l~~~l~~~~ 131 (139)
T 3d22_A 99 ATPTFFFLRDG-QQVDKLVGA-NKPELHKKITAIL 131 (139)
T ss_dssp EESEEEEEETT-EEEEEEESC-CHHHHHHHHHHHH
T ss_pred cccEEEEEcCC-eEEEEEeCC-CHHHHHHHHHHHh
Confidence 89999999642 122235576 7889999998764
|
| >1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A | Back alignment and structure |
|---|
Probab=96.08 E-value=0.98 Score=43.74 Aligned_cols=132 Identities=13% Similarity=0.111 Sum_probs=86.8
Q ss_pred CCCeEEEecCCCCCCccccCCCCHHHHHHHH----HhhcCCCeeecChhhHHHhhcCCCcE-EEEEEeCCChhHHHHHHH
Q 020623 93 KVPALVALQPSYNEHNIFYGPFDEEFLEEFI----KQNFLPLSVPINQDTLNLLKDDKRKI-VLAIVEDETEEKSQKLVT 167 (323)
Q Consensus 93 ~~p~ivv~k~~~~~~~~y~g~~~~~~L~~fI----~~~~~Plv~~~t~~~~~~~~~~~~~~-v~~f~~~~~~e~~~~~~~ 167 (323)
..|++.+.+++.+....|.|-=.-.++..|| .-...| ..++.+++..+.....++ +..|... .=..=+.+..
T Consensus 61 ~~p~~~~~~~~~~~~i~f~g~p~g~e~~s~~~~l~~~~~~~--~~~~~~~~~~i~~~~~~~~i~~f~a~-~C~~C~~~~~ 137 (521)
T 1hyu_A 61 RKPSFLITNPGSQQGPRFAGSPLGHEFTSLVLALLWTGGHP--SKEAQSLLEQIRDIDGDFEFETYYSL-SCHNCPDVVQ 137 (521)
T ss_dssp CSSEEEEECTTCCCSCEEESCCCGGGHHHHHHHHHHHTTCC--CCSCHHHHHHHHHCCSCEEEEEEECT-TCSSHHHHHH
T ss_pred CCCEEEEecCCCcceEEEeccCcchhHHHHHHHHHhhcCCC--CCCCHHHHHHHHhcCCCcceEEEECC-CCcCcHHHHH
Confidence 4699999886544566787732223344444 334444 577888888886544444 4455431 1112356777
Q ss_pred HHHHHHHhCCCeEEEEEcCcchhhHhhhcCCcCCCCCCeEEEEeCCcceeeccCCCCCCCCCCHHHHHHHHHH
Q 020623 168 TLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEG 240 (323)
Q Consensus 168 ~l~~~A~~~~~l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~~ 240 (323)
.|.++|..++++.|..+|.+.++.+.+.+|+ ...|++++ +++... .+..+.+.|.+|++.
T Consensus 138 ~l~~~a~~~~~v~~~~vd~~~~~~~~~~~~i---~svPt~~i---~g~~~~-------~G~~~~~~l~~~l~~ 197 (521)
T 1hyu_A 138 ALNLMAVLNPRIKHTAIDGGTFQNEITERNV---MGVPAVFV---NGKEFG-------QGRMTLTEIVAKVDT 197 (521)
T ss_dssp HHHHHHHHCTTEEEEEEETTTCHHHHHHTTC---CSSSEEEE---TTEEEE-------ESCCCHHHHHHHHCC
T ss_pred HHHHHHhHcCceEEEEEechhhHHHHHHhCC---CccCEEEE---CCEEEe-------cCCCCHHHHHHHHhh
Confidence 8889999988899999999999999999999 57999977 433222 123566777777654
|
| >2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A | Back alignment and structure |
|---|
Probab=96.08 E-value=0.023 Score=42.82 Aligned_cols=93 Identities=15% Similarity=0.258 Sum_probs=60.6
Q ss_pred eecCChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeec-ccchhhHhhcCCCCCCeEEEe
Q 020623 30 SILNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAK-DFSEDTMVLYDFDKVPALVAL 100 (323)
Q Consensus 30 ~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~-~~~~~~~~~~~~~~~p~ivv~ 100 (323)
..+.+.+++ +.+..++ +++|-|... ...+.+++..+. ++.|...+ +...+++.++++...|++++|
T Consensus 5 ~~~~~~~~f-~~~~~~~---~~vv~f~a~wC~~C~~~~~~l~~~~~~~~-~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~ 79 (110)
T 2l6c_A 5 RDITTEAGM-AHFEGLS---DAIVFFHKNLCPHCKNMEKVLDKFGARAP-QVAISSVDSEARPELMKELGFERVPTLVFI 79 (110)
T ss_dssp SBCGGGCSH-HHHTTCS---EEEEEEECSSCSTHHHHHHHHHHHHTTCT-TSCEEEEEGGGCHHHHHHTTCCSSCEEEEE
T ss_pred eecCCHHHH-HHHHcCC---CEEEEEECCCCHhHHHHHHHHHHHHHHCC-CcEEEEEcCcCCHHHHHHcCCcccCEEEEE
Confidence 344466778 5555554 466666542 246677777765 45555442 235678889999899999999
Q ss_pred cCCCCCCccccCCCCHHHHHHHHHhhcC
Q 020623 101 QPSYNEHNIFYGPFDEEFLEEFIKQNFL 128 (323)
Q Consensus 101 k~~~~~~~~y~g~~~~~~L~~fI~~~~~ 128 (323)
+++ .....+.|..+.+.|.+||....-
T Consensus 80 ~~G-~~v~~~~G~~~~~~l~~~~~~~~~ 106 (110)
T 2l6c_A 80 RDG-KVAKVFSGIMNPRELQALYASIHH 106 (110)
T ss_dssp ESS-SEEEEEESCCCHHHHHHHHHTC--
T ss_pred ECC-EEEEEEcCCCCHHHHHHHHHHHhh
Confidence 642 222346688899999999987653
|
| >3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=96.07 E-value=0.028 Score=43.28 Aligned_cols=94 Identities=13% Similarity=0.124 Sum_probs=65.0
Q ss_pred ChhhHHHhhcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCCeEEEEEcCcchhh----HhhhcCCcCCCCCCeEEEE
Q 020623 135 NQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFAD----FADTFEANKKSKLPKMVVW 210 (323)
Q Consensus 135 t~~~~~~~~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~l~F~~vd~~~~~~----~~~~~gl~~~~~~P~ivI~ 210 (323)
|.+.+..+...++|+++.|... .=.....+...|.+++.. .++.|.++|.+++.. +++.||+ + ...|+++++
T Consensus 13 s~e~f~~ii~~~~~vvi~khat-wCgpc~~~~~~~e~~~~~-~~v~~~~vdVde~r~~Sn~IA~~~~V-~-h~sPq~il~ 88 (112)
T 3iv4_A 13 SIDQFEQVIEENKYVFVLKHSE-TCPISANAYDQFNKFLYE-RDMDGYYLIVQQERDLSDYIAKKTNV-K-HESPQAFYF 88 (112)
T ss_dssp SHHHHHHHHHHCSEEEEEEECT-TCHHHHHHHHHHHHHHHH-HTCCEEEEEGGGGHHHHHHHHHHHTC-C-CCSSEEEEE
T ss_pred CHHHHHHHHhcCCCEEEEEECC-cCHhHHHHHHHHHHHhcc-CCceEEEEEeecCchhhHHHHHHhCC-c-cCCCeEEEE
Confidence 3456777766667877766552 223346677788888875 459999999998754 6889999 2 468999988
Q ss_pred eCCc-ceeeccCCCCCCCCCCHHHHHHHH
Q 020623 211 DGNE-NYLTVIGSESIDEEDQGSQISRFL 238 (323)
Q Consensus 211 ~~~~-kY~~~~~~~~~~~~~t~~~I~~Fi 238 (323)
...+ .|.-. -..++.+.|.+++
T Consensus 89 k~G~~v~~~S------H~~I~~~~l~~~~ 111 (112)
T 3iv4_A 89 VNGEMVWNRD------HGDINVSSLAQAE 111 (112)
T ss_dssp ETTEEEEEEE------GGGCSHHHHHHHT
T ss_pred ECCEEEEEee------ccccCHHHHHHhh
Confidence 7654 44432 2358888888765
|
| >1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A | Back alignment and structure |
|---|
Probab=96.07 E-value=0.023 Score=43.78 Aligned_cols=92 Identities=16% Similarity=0.169 Sum_probs=62.3
Q ss_pred ceecCChHHHHHHHHh-cCCcccEEEEecCC---------------hhHHHHHHHhhcCceeEEeec--------ccchh
Q 020623 29 VSILNSDAEVSDFVEN-AGTFFPLFIGFGLD---------------ESVMSNLALKYKKKAWFAVAK--------DFSED 84 (323)
Q Consensus 29 v~~i~s~~~l~~fl~~-~~~~~~~vVgf~~~---------------~~~f~~~A~~~~~~~~F~~~~--------~~~~~ 84 (323)
...+.+.+++++.+.. .+. +++|-|... ...+.+++.++.+.+.|..++ +...+
T Consensus 6 ~v~~~~~~~~~~~~~~~~~~--~v~v~F~a~~~~~~~~wC~~C~~~~p~l~~~~~~~~~~~~~~~vd~~~~~~~~d~~~~ 83 (123)
T 1wou_A 6 EVSVSGFEEFHRAVEQHNGK--TIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEGCVFIYCQVGEKPYWKDPNND 83 (123)
T ss_dssp EEEEESHHHHHHHHHTTTTS--EEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCTTEEEEEEECCCHHHHHCTTCH
T ss_pred eEEeccHHHHHHHHHHhCCC--EEEEEEEccCCCCCCCcCHHHHHhhHHHHHHHHHcCCCcEEEEEECCCchhhhchhHH
Confidence 4456688999988876 222 567777533 136778888887677676553 23456
Q ss_pred hHhhcCCCCCCeEEEecCCCCCCcc-ccCCCCHHHHHHHHHh
Q 020623 85 TMVLYDFDKVPALVALQPSYNEHNI-FYGPFDEEFLEEFIKQ 125 (323)
Q Consensus 85 ~~~~~~~~~~p~ivv~k~~~~~~~~-y~g~~~~~~L~~fI~~ 125 (323)
++.++++...|++++|++ ..... +.| .+.+.|++||.+
T Consensus 84 ~~~~~~i~~~Pt~~~~~~--~~~~~g~~~-~~~~~l~~~i~~ 122 (123)
T 1wou_A 84 FRKNLKVTAVPTLLKYGT--PQKLVESEC-LQANLVEMLFSE 122 (123)
T ss_dssp HHHHHCCCSSSEEEETTS--SCEEEGGGG-GCHHHHHHHHHC
T ss_pred HHHHCCCCeeCEEEEEcC--CceEecccc-CCHHHHHHHHhc
Confidence 778899999999999986 23322 223 467889999874
|
| >2l4c_A Endoplasmic reticulum resident protein 27; ERP27, PDI, B domain, peptide binding; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.03 E-value=0.034 Score=43.55 Aligned_cols=102 Identities=12% Similarity=0.109 Sum_probs=63.9
Q ss_pred hcCCCeee--cC-hhhHHHhhcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCCeEEEEEcCcchhhHhhhcCCcCCC
Q 020623 126 NFLPLSVP--IN-QDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKS 202 (323)
Q Consensus 126 ~~~Plv~~--~t-~~~~~~~~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~l~F~~vd~~~~~~~~~~~gl~~~~ 202 (323)
.+.|.... ++ .+.+..+.......++.|....+. ...+.|.++|+.+.++.|++++. +.++..+|+ +
T Consensus 16 q~gP~~~~~~i~s~~e~e~fi~~~~v~VVGfF~~~~~----~~~~~F~~~A~~~~d~~F~~t~~---~~v~~~~~v-~-- 85 (124)
T 2l4c_A 16 GPGAAQEPTWLTDVPAAMEFIAATEVAVIGFFQDLEI----PAVPILHSMVQKFPGVSFGISTD---SEVLTHYNI-T-- 85 (124)
T ss_dssp CSCCSCCCEECCSHHHHHHHHHTSSEEEEEECSCTTS----THHHHHHHHHHHCTTSEEEEECC---HHHHHHTTC-C--
T ss_pred ccCCCCcceEcCCHHHHHHHHhcCCCEEEEEECCCCC----hhHHHHHHHHHhCCCceEEEECh---HHHHHHcCC-C--
Confidence 34455443 43 455666665555566666653221 22468999999994499999875 457788888 3
Q ss_pred CCCeEEEEeC-CcceeeccCCCCCCCCCCHHHHHHHHHH
Q 020623 203 KLPKMVVWDG-NENYLTVIGSESIDEEDQGSQISRFLEG 240 (323)
Q Consensus 203 ~~P~ivI~~~-~~kY~~~~~~~~~~~~~t~~~I~~Fi~~ 240 (323)
.|.++++.. +.+.....|.. .++++.+.|.+||+.
T Consensus 86 -~~~vvlfkkfde~~~~~~g~~--~~~~~~~~L~~FI~~ 121 (124)
T 2l4c_A 86 -GNTICLFRLVDNEQLNLEDED--IESIDATKLSRFIEI 121 (124)
T ss_dssp -SSCEEEEETTTTEEEEECHHH--HTTCCHHHHHHHHHH
T ss_pred -CCeEEEEEcCCCCceeecCcc--cCCCCHHHHHHHHHH
Confidence 688988886 33322221100 025799999999985
|
| >3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=96.03 E-value=0.09 Score=41.93 Aligned_cols=95 Identities=9% Similarity=0.142 Sum_probs=58.7
Q ss_pred CCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC--eEEEEEcCcchh----hHhhhc----------------------
Q 020623 145 DKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE--LVFCYVGIKQFA----DFADTF---------------------- 196 (323)
Q Consensus 145 ~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~--l~F~~vd~~~~~----~~~~~~---------------------- 196 (323)
.++++++.|... .=..-......|.++++++++ +.|+.++.+... ++++.+
T Consensus 33 ~gk~vlv~f~~~-~C~~C~~~~~~l~~l~~~~~~~~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (165)
T 3or5_A 33 KGKAYIVNFFAT-WCPPCRSEIPDMVQVQKTWASRGFTFVGIAVNEQLPNVKNYMKTQGIIYPVMMATPELIRAFNGYID 111 (165)
T ss_dssp TTCEEEEEEECT-TSHHHHHHHHHHHHHHHHHTTTTEEEEEEECSCCHHHHHHHHHHHTCCSCEEECCHHHHHHHHTTST
T ss_pred CCCEEEEEEEcC-cCHHHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHHHHcCCCCceEecCHHHHHHHhhhhc
Confidence 356777767642 112345566778888888775 888887765432 222222
Q ss_pred -CCcCCCCCCeEEEEeCCcceeeccCCCCCCCCCCHHHHHHHHHHHHcCcccc
Q 020623 197 -EANKKSKLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEGYREGRTEQ 248 (323)
Q Consensus 197 -gl~~~~~~P~ivI~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~~~~~Gkl~~ 248 (323)
|+ ...|.++++|.+++....- .+..+.+.+.++|+.+++.....
T Consensus 112 ~~i---~~~P~~~lid~~G~i~~~~-----~g~~~~~~l~~~l~~~l~~~~~~ 156 (165)
T 3or5_A 112 GGI---TGIPTSFVIDASGNVSGVI-----VGPRSKADFDRIVKMALGAKAAT 156 (165)
T ss_dssp TCS---CSSSEEEEECTTSBEEEEE-----CSCCCHHHHHHHHHHHHC-----
T ss_pred cCC---CCCCeEEEECCCCcEEEEE-----cCCCCHHHHHHHHHHHHhhhccc
Confidence 45 5789999999877432210 23467899999999998755443
|
| >2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A | Back alignment and structure |
|---|
Probab=96.03 E-value=0.1 Score=40.69 Aligned_cols=98 Identities=11% Similarity=0.175 Sum_probs=65.7
Q ss_pred cCCCceecCChHHHHHHHHhc-CCcccEEEEecCC--------hhHH---HHHHHhhcCceeEEeecc-----cchhhHh
Q 020623 25 VAPDVSILNSDAEVSDFVENA-GTFFPLFIGFGLD--------ESVM---SNLALKYKKKAWFAVAKD-----FSEDTMV 87 (323)
Q Consensus 25 ~~p~v~~i~s~~~l~~fl~~~-~~~~~~vVgf~~~--------~~~f---~~~A~~~~~~~~F~~~~~-----~~~~~~~ 87 (323)
..|++..+.+.++++..+.+. +. +++|-|... ...+ .+++..+.+ +.|...+. ...+++.
T Consensus 9 ~~~~f~~~~~~~~~~~~l~~~~~k--~vlv~F~a~wC~~C~~~~~~~~~~~~l~~~~~~-~~~~~vd~~~~~~~~~~l~~ 85 (134)
T 2fwh_A 9 THLNFTQIKTVDELNQALVEAKGK--PVMLDLYADWCVACKEFEKYTFSDPQVQKALAD-TVLLQANVTANDAQDVALLK 85 (134)
T ss_dssp -CCCCEECCSHHHHHHHHHHHTTS--CEEEEEECTTCHHHHHHHHHTTTSHHHHHHTTT-SEEEEEECTTCCHHHHHHHH
T ss_pred cCCCcEEecCHHHHHHHHHHhcCC--cEEEEEECCCCHHHHHHHHHhcCCHHHHHHhcC-cEEEEEeCCCCcchHHHHHH
Confidence 466777788999988877653 22 567777543 1233 567777764 55544321 2346778
Q ss_pred hcCCCCCCeEEEecCCCCCC---ccccCCCCHHHHHHHHHhh
Q 020623 88 LYDFDKVPALVALQPSYNEH---NIFYGPFDEEFLEEFIKQN 126 (323)
Q Consensus 88 ~~~~~~~p~ivv~k~~~~~~---~~y~g~~~~~~L~~fI~~~ 126 (323)
+|++...|+++++.. .++. ..+.|..+.++|.+||...
T Consensus 86 ~~~v~~~Pt~~~~d~-~G~~v~~~~~~G~~~~~~l~~~l~~~ 126 (134)
T 2fwh_A 86 HLNVLGLPTILFFDG-QGQEHPQARVTGFMDAETFSAHLRDR 126 (134)
T ss_dssp HTTCCSSSEEEEECT-TSCBCGGGCBCSCCCHHHHHHHHHHC
T ss_pred HcCCCCCCEEEEECC-CCCEeeeeeeeeccCHHHHHHHHHhc
Confidence 999989999999943 2332 3467988999999999754
|
| >1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa} | Back alignment and structure |
|---|
Probab=96.02 E-value=0.018 Score=44.31 Aligned_cols=95 Identities=17% Similarity=0.245 Sum_probs=65.2
Q ss_pred CCceecCChHHHHHHHHh----cCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeec-ccchhhHhhcCCCC
Q 020623 27 PDVSILNSDAEVSDFVEN----AGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAK-DFSEDTMVLYDFDK 93 (323)
Q Consensus 27 p~v~~i~s~~~l~~fl~~----~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~-~~~~~~~~~~~~~~ 93 (323)
.++..|++.+++++.+.. ++ +++|-|... ...+.+++.++. ++.|...+ +...+++.++++..
T Consensus 14 ~~~~~i~~~~~~~~~l~~~~~~~~---~~vv~f~~~~C~~C~~~~~~l~~~~~~~~-~v~~~~v~~~~~~~~~~~~~v~~ 89 (130)
T 1wmj_A 14 GVVIACHNKDEFDAQMTKAKEAGK---VVIIDFTASWCGPCRFIAPVFAEYAKKFP-GAVFLKVDVDELKEVAEKYNVEA 89 (130)
T ss_dssp SSSBCCSSSHHHHHHHHHHHTTTC---BCBEECCSSSCSCSSSSHHHHHHHHHHCT-TBCCEECCTTTSGGGHHHHTCCS
T ss_pred cceEEcCCHHHHHHHHHHHhhcCC---EEEEEEECCCChhHHHHHHHHHHHHHHCC-CCEEEEEeccchHHHHHHcCCCc
Confidence 457788888999988875 33 456666532 357888888876 45555443 23567888999988
Q ss_pred CCeEEEecCCCCCCccccCCCCHHHHHHHHHhhc
Q 020623 94 VPALVALQPSYNEHNIFYGPFDEEFLEEFIKQNF 127 (323)
Q Consensus 94 ~p~ivv~k~~~~~~~~y~g~~~~~~L~~fI~~~~ 127 (323)
.|++++++++ .....+.| .+.+.|.+||.+..
T Consensus 90 ~Pt~~~~~~g-~~~~~~~g-~~~~~l~~~l~~~~ 121 (130)
T 1wmj_A 90 MPTFLFIKDG-AEADKVVG-ARKDDLQNTIVKHV 121 (130)
T ss_dssp SCCCCBCTTT-TCCBCCCT-TCTTTHHHHHHHHT
T ss_pred cceEEEEeCC-eEEEEEeC-CCHHHHHHHHHHHH
Confidence 9999998642 22234557 46778999998754
|
| >1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=95.99 E-value=0.024 Score=40.04 Aligned_cols=65 Identities=9% Similarity=0.116 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHhCCC-eEEEEEcCcchhhHhhhcCCcCCCCCCeEEEEeCCcceeeccCCCCCCCCCCHHHHHHHHHHH
Q 020623 164 KLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEGY 241 (323)
Q Consensus 164 ~~~~~l~~~A~~~~~-l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~~~ 241 (323)
.....|+++++++++ +.|+.+|.++.+.+++.+|+ ...|.+++ +++... .+..+.+.|.+|++..
T Consensus 19 ~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v---~~~Pt~~~---~G~~~~-------~G~~~~~~l~~~l~~~ 84 (85)
T 1fo5_A 19 AAKRVVEEVANEMPDAVEVEYINVMENPQKAMEYGI---MAVPTIVI---NGDVEF-------IGAPTKEALVEAIKKR 84 (85)
T ss_dssp THHHHHHHHHHHCSSSEEEEEEESSSSCCTTTSTTT---CCSSEEEE---TTEEEC-------CSSSSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHCCC---cccCEEEE---CCEEee-------ecCCCHHHHHHHHHHh
Confidence 455678889999986 99999999877778888998 57999988 444322 2335778999999875
|
| >1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=95.99 E-value=0.019 Score=40.50 Aligned_cols=66 Identities=9% Similarity=0.075 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHhCCC-eEEEEEcCcchhhHhhhcCCcCCCCCCeEEEEeCCcceeeccCCCCCCCCCCHHHHHHHHHHHH
Q 020623 164 KLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEGYR 242 (323)
Q Consensus 164 ~~~~~l~~~A~~~~~-l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~~~~ 242 (323)
.+...|+++++++++ +.|+.+|.+..+.+++.+|+ ...|.+++ +++... .| ..+.+.|.+|+++.+
T Consensus 18 ~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v---~~~Pt~~~---~G~~~~-~G------~~~~~~l~~~l~~~l 84 (85)
T 1nho_A 18 MAIEVVDEAKKEFGDKIDVEKIDIMVDREKAIEYGL---MAVPAIAI---NGVVRF-VG------APSREELFEAINDEM 84 (85)
T ss_dssp THHHHHHHHHHHHCSSCCEEEECTTTCGGGGGGTCS---SCSSEEEE---TTTEEE-EC------SSCCHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCCeEEEEEECCCCHHHHHhCCc---eeeCEEEE---CCEEEE-cc------CCCHHHHHHHHHHHh
Confidence 455678888999886 99999999877788889999 57999988 443322 12 356789999998765
|
| >2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=95.98 E-value=0.014 Score=45.29 Aligned_cols=101 Identities=21% Similarity=0.237 Sum_probs=67.0
Q ss_pred CCceecCChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhc--CceeEEeecc-cchhhHhhcCCCCCC
Q 020623 27 PDVSILNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYK--KKAWFAVAKD-FSEDTMVLYDFDKVP 95 (323)
Q Consensus 27 p~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~--~~~~F~~~~~-~~~~~~~~~~~~~~p 95 (323)
..|..|+ .++++..+...+. +++|-|... ...|.+++.++. ..+.|...+. ....++.+|++...|
T Consensus 7 ~~v~~l~-~~~~~~~~~~~~~--~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P 83 (133)
T 2dj3_A 7 GPVKVVV-GKTFDAIVMDPKK--DVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATANDITNDQYKVEGFP 83 (133)
T ss_dssp CSSEECC-TTTCCCCCTCTTS--EEEEEECCTTCSHHHHHHHHHHHHHHHHTTSSSEEEEEECTTTSCCCCSSCCCSSSS
T ss_pred CceEEEc-CCCHHHHhccCCC--cEEEEEECCCChhHHHHHHHHHHHHHHhcCCCCEEEEEecCCcCHHHHhhcCCCcCC
Confidence 3577775 4677666554232 567777643 246788898887 3566666532 234556678998999
Q ss_pred eEEEecCCCCC-Ccccc-CCCCHHHHHHHHHhhcCCC
Q 020623 96 ALVALQPSYNE-HNIFY-GPFDEEFLEEFIKQNFLPL 130 (323)
Q Consensus 96 ~ivv~k~~~~~-~~~y~-g~~~~~~L~~fI~~~~~Pl 130 (323)
++++|+++... ...|. |..+.+.|.+||..+.-..
T Consensus 84 t~~~~~~g~~~~~~~~~gg~~~~~~l~~~l~~~~~~~ 120 (133)
T 2dj3_A 84 TIYFAPSGDKKNPIKFEGGNRDLEHLSKFIDEHATKR 120 (133)
T ss_dssp EEEEECTTCTTSCEECCSSCCSTTHHHHHHHHHSSSC
T ss_pred EEEEEeCCCcccceEecCCCcCHHHHHHHHHHhcccc
Confidence 99999863222 22466 5678899999999876443
|
| >3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A | Back alignment and structure |
|---|
Probab=95.94 E-value=0.047 Score=43.81 Aligned_cols=95 Identities=20% Similarity=0.267 Sum_probs=66.8
Q ss_pred ceecCChHHHHHHHHh-cCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeec-ccchhhHhhcCCCCCCeEE
Q 020623 29 VSILNSDAEVSDFVEN-AGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAK-DFSEDTMVLYDFDKVPALV 98 (323)
Q Consensus 29 v~~i~s~~~l~~fl~~-~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~-~~~~~~~~~~~~~~~p~iv 98 (323)
+..+.+.++++..+.. .+. +++|-|... .+.+.+++.++.+.+.|..++ +...+++.+|++...|+++
T Consensus 5 l~~i~~~~~~~~~i~~~~~k--~vlv~F~a~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~ 82 (149)
T 3gix_A 5 LPKLTSKKEVDQAIKSTAEK--VLVLRFGRDEDPVCLQLDDILSKTSSDLSKMAAIYLVDVDQTAVYTQYFDISYIPSTV 82 (149)
T ss_dssp CCEECSHHHHHHHHHHCCSS--EEEEEEECTTSHHHHHHHHHHHHHHTTTTTTEEEEEEETTTCCHHHHHTTCCSSSEEE
T ss_pred eeecCCHHHHHHHHHhcCCC--EEEEEEECCCCHHHHHHHHHHHHHHHHccCceEEEEEECCcCHHHHHHcCCCccCeEE
Confidence 4557788999988763 332 577877643 247788898888767676553 2456788899998999999
Q ss_pred EecCCCCCC---------ccccC-CCCHHHHHHHHHhh
Q 020623 99 ALQPSYNEH---------NIFYG-PFDEEFLEEFIKQN 126 (323)
Q Consensus 99 v~k~~~~~~---------~~y~g-~~~~~~L~~fI~~~ 126 (323)
+++++ ... ..+.| ..+.++|.+||...
T Consensus 83 ~~~~G-~~v~~~~g~~~~~~~~G~~~~~~~l~~~l~~~ 119 (149)
T 3gix_A 83 FFFNG-QHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVI 119 (149)
T ss_dssp EEETT-EEEEEECSSSCCSCEESCCSSHHHHHHHHHHH
T ss_pred EEECC-eEEEeecCCCCCCeEeeecCCHHHHHHHHHHH
Confidence 88753 112 23557 66788899998764
|
| >2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=95.87 E-value=0.054 Score=42.69 Aligned_cols=94 Identities=9% Similarity=0.139 Sum_probs=58.0
Q ss_pred CCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC--eEEEEEcCcchh-----------------------hHhhhcCCcC
Q 020623 146 KRKIVLAIVEDETEEKSQKLVTTLKAAASANRE--LVFCYVGIKQFA-----------------------DFADTFEANK 200 (323)
Q Consensus 146 ~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~--l~F~~vd~~~~~-----------------------~~~~~~gl~~ 200 (323)
++++++.|....- ..-......|.++++++++ +.|+.++.+... .+.+.||+
T Consensus 30 gk~~lv~f~~~~C-~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v-- 106 (152)
T 2lja_A 30 GKYIYIDVWATWC-GPCRGELPALKELEEKYAGKDIHFVSLSCDKNKKAWENMVTKDQLKGIQLHMGTDRTFMDAYLI-- 106 (152)
T ss_dssp TSEEEEEECCSSC-CGGGGTHHHHHHHHHHSTTSSEEEEEEECCSCHHHHHHHHHHHTCCSEEEECSSCTHHHHHTTC--
T ss_pred CCEEEEEEECCcC-HhHHHHhHHHHHHHHHhccCCeEEEEEEccCcHHHHHHHHHhcCCCCceeecCcchhHHHHcCc--
Confidence 4566655553211 1123344566677777754 777776654321 45567787
Q ss_pred CCCCCeEEEEeCCcceeeccCCCCCCCCCCHHHHHHHHHHHHcCcccc
Q 020623 201 KSKLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEGYREGRTEQ 248 (323)
Q Consensus 201 ~~~~P~ivI~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~~~~~Gkl~~ 248 (323)
...|.+++++.+++..... .+..+.+.|.++|+...++.=+.
T Consensus 107 -~~~P~~~lid~~G~i~~~~-----~g~~~~~~l~~~l~~~~~~~~~~ 148 (152)
T 2lja_A 107 -NGIPRFILLDRDGKIISAN-----MTRPSDPKTAEKFNELLGLEGHH 148 (152)
T ss_dssp -CSSCCEEEECTTSCEEESS-----CCCTTCHHHHHHHHHHHTCCSSS
T ss_pred -CCCCEEEEECCCCeEEEcc-----CCCCCHHHHHHHHHHHhcccccc
Confidence 4789999999876433211 23467789999999998875443
|
| >1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=95.87 E-value=0.013 Score=45.42 Aligned_cols=94 Identities=20% Similarity=0.339 Sum_probs=58.2
Q ss_pred CceecCChHHHHHHH-HhcCCcccEEEEecCC----------------------hhHHHHHHHhhcCceeEEeec-ccch
Q 020623 28 DVSILNSDAEVSDFV-ENAGTFFPLFIGFGLD----------------------ESVMSNLALKYKKKAWFAVAK-DFSE 83 (323)
Q Consensus 28 ~v~~i~s~~~l~~fl-~~~~~~~~~vVgf~~~----------------------~~~f~~~A~~~~~~~~F~~~~-~~~~ 83 (323)
.+..++ .++++..+ +.++ +++|-|... .+.|.+++.++.+++.|..++ +...
T Consensus 4 ~v~~l~-~~~f~~~~~~~~k---~vlv~F~a~wC~~c~~l~~~~~~~~~~C~~~~p~~~~l~~~~~~~~~~~~vd~d~~~ 79 (123)
T 1oaz_A 4 KIIHLT-DDSFDTDVLKADG---AILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP 79 (123)
T ss_dssp SCEECC-STTHHHHTTSCSS---EEEEEEECSSCSCBSSSTTSCCSCCCCCCTTHHHHTTC-------CEEEEEETTSCT
T ss_pred ccEecC-hhhHHHHHHhCCC---eEEEEEECCCCccccccccccccCCCCcHHHHHHHHHHHHHhcCCeEEEEEECCCCH
Confidence 467774 57776544 4444 567766431 235677787777667676553 2356
Q ss_pred hhHhhcCCCCCCeEEEecCCCCCCccccCCCCHHHHHHHHHhh
Q 020623 84 DTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQN 126 (323)
Q Consensus 84 ~~~~~~~~~~~p~ivv~k~~~~~~~~y~g~~~~~~L~~fI~~~ 126 (323)
+++.+|++...|++++|+++ .....+.|..+.++|.+||...
T Consensus 80 ~l~~~~~v~~~Pt~~~~~~G-~~~~~~~G~~~~~~l~~~l~~~ 121 (123)
T 1oaz_A 80 GTAPKYGIRGIPTLLLFKNG-EVAATKVGALSKGQLKEFLDAN 121 (123)
T ss_dssp TTGGGGTCCBSSEEEEEESS-SEEEEEESCCCHHHHHHHHTTT
T ss_pred HHHHHcCCCccCEEEEEECC-EEEEEEeCCCCHHHHHHHHHHH
Confidence 78889999999999999542 1222467888899999999764
|
| >2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens} | Back alignment and structure |
|---|
Probab=95.77 E-value=0.017 Score=44.41 Aligned_cols=80 Identities=21% Similarity=0.226 Sum_probs=56.1
Q ss_pred cEEEEecCC--------hhHHHHHHHhhcCceeEEeec---ccchhhHhhcCCCCCCeEEEecCCCCCCccccCCCCHHH
Q 020623 50 PLFIGFGLD--------ESVMSNLALKYKKKAWFAVAK---DFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEF 118 (323)
Q Consensus 50 ~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~---~~~~~~~~~~~~~~~p~ivv~k~~~~~~~~y~g~~~~~~ 118 (323)
+++|-|... ...+.+++.++.+.+.|...+ +...+++.+|++...|+++++.+.-.....+.|..+.+.
T Consensus 28 ~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~d~~~~~~~~~~v~~~Pt~~~~~~~G~~~~~~~G~~~~~~ 107 (126)
T 2l57_A 28 PTIIMFKTDTCPYCVEMQKELSYVSKEREGKFNIYYARLEEEKNIDLAYKYDANIVPTTVFLDKEGNKFYVHQGLMRKNN 107 (126)
T ss_dssp CEEEEEECSSCHHHHHHHHHHHHHHHHSSSSCEEEEEETTSSHHHHHHHHTTCCSSSEEEEECTTCCEEEEEESCCCHHH
T ss_pred cEEEEEECCCCccHHHHHHHHHHHHHHhcCCeEEEEEeCCCCchHHHHHHcCCcceeEEEEECCCCCEEEEecCCCCHHH
Confidence 467776542 246778888887667665553 224567889999889999999852112224668889999
Q ss_pred HHHHHHhhcCC
Q 020623 119 LEEFIKQNFLP 129 (323)
Q Consensus 119 L~~fI~~~~~P 129 (323)
|.+||....-+
T Consensus 108 l~~~l~~~~~~ 118 (126)
T 2l57_A 108 IETILNSLGVK 118 (126)
T ss_dssp HHHHHHHHCCC
T ss_pred HHHHHHHHhcc
Confidence 99999987654
|
| >2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A | Back alignment and structure |
|---|
Probab=95.76 E-value=0.069 Score=42.14 Aligned_cols=95 Identities=14% Similarity=0.180 Sum_probs=59.5
Q ss_pred CCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC--eEEEEEcCcc----------------------hhhHhhhcCCcC
Q 020623 145 DKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE--LVFCYVGIKQ----------------------FADFADTFEANK 200 (323)
Q Consensus 145 ~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~--l~F~~vd~~~----------------------~~~~~~~~gl~~ 200 (323)
.++++++.|.... =..-......|.++++++++ +.|+.++.+. ...+.+.||+
T Consensus 25 ~gk~vlv~F~~~~-C~~C~~~~~~l~~~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v-- 101 (151)
T 2f9s_A 25 KGKGVFLNFWGTW-CEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYDV-- 101 (151)
T ss_dssp TTSEEEEEEECTT-CHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCHHHHHHHHHHHTCCSCEEEETTSHHHHHTTC--
T ss_pred CCCEEEEEEECCC-CHHHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHHHHcCCCceEEECCchHHHHhcCC--
Confidence 3567777676531 12335566777788887753 7777766542 1245667788
Q ss_pred CCCCCeEEEEeCCcceeeccCCCCCCCCCCHHHHHHHHHHHHcCcccc
Q 020623 201 KSKLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEGYREGRTEQ 248 (323)
Q Consensus 201 ~~~~P~ivI~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~~~~~Gkl~~ 248 (323)
...|.++++|.+++....- .+..+.+.|.++|+.++++...+
T Consensus 102 -~~~P~~~lid~~G~i~~~~-----~G~~~~~~l~~~l~~ll~~~~~~ 143 (151)
T 2f9s_A 102 -SPLPTTFLINPEGKVVKVV-----TGTMTESMIHDYMNLIKPGETSG 143 (151)
T ss_dssp -CSSCEEEEECTTSEEEEEE-----ESCCCHHHHHHHHHHHSCC----
T ss_pred -CCCCeEEEECCCCcEEEEE-----eCCCCHHHHHHHHHHHHhhhhcc
Confidence 4689999999876422210 13467899999999998876655
|
| >2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.73 E-value=0.011 Score=46.49 Aligned_cols=96 Identities=16% Similarity=0.176 Sum_probs=64.6
Q ss_pred CceecCChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcC-ceeEEeecc-cchhhHhhcCCC-----
Q 020623 28 DVSILNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKK-KAWFAVAKD-FSEDTMVLYDFD----- 92 (323)
Q Consensus 28 ~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~-~~~F~~~~~-~~~~~~~~~~~~----- 92 (323)
.+..++ .+++++.+..+... +++|-|... ...+.+++.++.+ .+.|..++. ...+++.++++.
T Consensus 8 ~v~~l~-~~~f~~~~~~~~~~-~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~~~~ 85 (137)
T 2dj0_A 8 YIKYFN-DKTIDEELERDKRV-TWIVEFFANWSNDCQSFAPIYADLSLKYNCTGLNFGKVDVGRYTDVSTRYKVSTSPLT 85 (137)
T ss_dssp CCEECC-TTHHHHHHHHSTTS-CEEEEECCTTCSTTTTTHHHHHHHHHHHCSSSCEEEECCTTTCHHHHHHTTCCCCSSS
T ss_pred eEEEcc-HhhHHHHHhcCCCC-EEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEeCccCHHHHHHccCcccCCc
Confidence 366774 68888888766521 467777542 3578899999875 677766632 356788899997
Q ss_pred -CCCeEEEecCCCCCCccccCCCCHHHHHHHHHhh
Q 020623 93 -KVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQN 126 (323)
Q Consensus 93 -~~p~ivv~k~~~~~~~~y~g~~~~~~L~~fI~~~ 126 (323)
..|++++|+++ .....+.|..+.+.|.+||.++
T Consensus 86 ~~~Pt~~~~~~G-~~~~~~~G~~~~~~l~~~l~~~ 119 (137)
T 2dj0_A 86 KQLPTLILFQGG-KEAMRRPQIDKKGRAVSWTFSE 119 (137)
T ss_dssp SCSSEEEEESSS-SEEEEESCBCSSSCBCCCCCCH
T ss_pred CCCCEEEEEECC-EEEEEecCcCchHHHHHHHhcc
Confidence 89999999742 1222356766666677776544
|
| >2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=95.71 E-value=0.079 Score=41.76 Aligned_cols=94 Identities=7% Similarity=0.031 Sum_probs=60.0
Q ss_pred CCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC--eEEEEEcC-----------------------cchhhHhhhcCCcC
Q 020623 146 KRKIVLAIVEDETEEKSQKLVTTLKAAASANRE--LVFCYVGI-----------------------KQFADFADTFEANK 200 (323)
Q Consensus 146 ~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~--l~F~~vd~-----------------------~~~~~~~~~~gl~~ 200 (323)
++++++.|.... =..-......|+++++++++ +.|+.++. +....+.+.||+
T Consensus 28 gk~~lv~f~~~~-C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i-- 104 (153)
T 2l5o_A 28 GKVTLINFWFPS-CPGCVSEMPKIIKTANDYKNKNFQVLAVAQPIDPIESVRQYVKDYGLPFTVMYDADKAVGQAFGT-- 104 (153)
T ss_dssp TCEEEEEEECTT-CTTHHHHHHHHHHHHHHGGGTTEEEEEEECTTSCHHHHHHHHHHTTCCSEEEECSSCHHHHHHTC--
T ss_pred CCEEEEEEECCC-CccHHHHHHHHHHHHHHhccCCeEEEEEecCCCCHHHHHHHHHHcCCCceEEcCchHHHHHHcCC--
Confidence 466666665421 12234556677777777663 66655542 112345677888
Q ss_pred CCCCCeEEEEeCCcce--eeccCCCCCCCCCCHHHHHHHHHHHHcCcccccc
Q 020623 201 KSKLPKMVVWDGNENY--LTVIGSESIDEEDQGSQISRFLEGYREGRTEQKK 250 (323)
Q Consensus 201 ~~~~P~ivI~~~~~kY--~~~~~~~~~~~~~t~~~I~~Fi~~~~~Gkl~~~~ 250 (323)
...|.+++++.+++. .+. +..+.+.|.++|+.++.+.-.+-.
T Consensus 105 -~~~P~~~lid~~G~i~~~~~-------g~~~~~~l~~~l~~ll~~~~~~~~ 148 (153)
T 2l5o_A 105 -QVYPTSVLIGKKGEILKTYV-------GEPDFGKLYQEIDTAWRNSDAEGH 148 (153)
T ss_dssp -CSSSEEEEECSSSCCCEEEE-------SSCCHHHHHHHHHHHHHCCSSCCT
T ss_pred -CccCeEEEECCCCcEEEEEc-------CCCCHHHHHHHHHHHHHhhhhccc
Confidence 468999999987643 221 246789999999999998776644
|
| >3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.68 E-value=0.082 Score=41.78 Aligned_cols=92 Identities=11% Similarity=0.051 Sum_probs=59.7
Q ss_pred CcEEEEEEeCCChhHHHHHHHHHHHHHHhCCCeEEEEEcC---------------------------cchhhHhhhcCCc
Q 020623 147 RKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGI---------------------------KQFADFADTFEAN 199 (323)
Q Consensus 147 ~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~l~F~~vd~---------------------------~~~~~~~~~~gl~ 199 (323)
+++++.|.... -..-......|.++++++ ++.|+.++. .....+...||+
T Consensus 31 k~vll~f~~~~-C~~C~~~~~~l~~l~~~~-~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v- 107 (154)
T 3ia1_A 31 KPAVIVFWASW-CTVCKAEFPGLHRVAEET-GVPFYVISREPRDTREVVLEYMKTYPRFIPLLASDRDRPHEVAARFKV- 107 (154)
T ss_dssp SSEEEEEECTT-CHHHHHHHHHHHHHHHHH-CCCEEEEECCTTCCHHHHHHHHTTCTTEEECBCCSSCCHHHHHTTSSB-
T ss_pred CeEEEEEEccc-ChhHHHHHHHHHHHHHHc-CCeEEEEeCCCcccHHHHHHHHHHcCCCcccccccccchHHHHHHhCC-
Confidence 67777666531 123355667788888888 766666666 133456778888
Q ss_pred CCCCCCeEEEEeCCcceeeccCCCCCCCCCCHHHHHHHHHHHHcCcccc
Q 020623 200 KKSKLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEGYREGRTEQ 248 (323)
Q Consensus 200 ~~~~~P~ivI~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~~~~~Gkl~~ 248 (323)
...|.++++|.+++....- .+..+.+.|.++|++...+.-..
T Consensus 108 --~~~P~~~lid~~G~i~~~~-----~g~~~~~~l~~~l~~~~~~~~~~ 149 (154)
T 3ia1_A 108 --LGQPWTFVVDREGKVVALF-----AGRAGREALLDALLLAGADLEGH 149 (154)
T ss_dssp --CSSCEEEEECTTSEEEEEE-----ESBCCHHHHHHHHHHTTCCC---
T ss_pred --CcccEEEEECCCCCEEEEE-----cCCCCHHHHHHHHHhccCccccc
Confidence 4789999999877422210 23468899999999988765443
|
| >2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP} | Back alignment and structure |
|---|
Probab=95.67 E-value=0.13 Score=40.73 Aligned_cols=91 Identities=13% Similarity=0.206 Sum_probs=59.5
Q ss_pred CCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC--eEEEEEcCcc-------------------------hhhHhhhcCC
Q 020623 146 KRKIVLAIVEDETEEKSQKLVTTLKAAASANRE--LVFCYVGIKQ-------------------------FADFADTFEA 198 (323)
Q Consensus 146 ~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~--l~F~~vd~~~-------------------------~~~~~~~~gl 198 (323)
++++++.|....- ..-......|.++++++++ +.|+.++.+. ...+.+.||+
T Consensus 29 gk~vll~F~a~~C-~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v 107 (152)
T 2lrn_A 29 GKYVLVDFWFAGC-SWCRKETPYLLKTYNAFKDKGFTIYGVSTDRREEDWKKAIEEDKSYWNQVLLQKDDVKDVLESYCI 107 (152)
T ss_dssp TSEEEEEEECTTC-TTHHHHHHHHHHHHHHHTTTTEEEEEEECCSCHHHHHHHHHHHTCCSEEEEECHHHHHHHHHHTTC
T ss_pred CCEEEEEEECCCC-hhHHHHHHHHHHHHHHhccCCeEEEEEEccCCHHHHHHHHHHhCCCCeEEecccchhHHHHHHhCC
Confidence 4666666664211 1234555677777777764 7777776653 2456677888
Q ss_pred cCCCCCCeEEEEeCCcceeeccCCCCCCCCCCHHHHHHHHHHHHcCcccc
Q 020623 199 NKKSKLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEGYREGRTEQ 248 (323)
Q Consensus 199 ~~~~~~P~ivI~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~~~~~Gkl~~ 248 (323)
...|.++++|.+++-... ..+.+.|.++|+.++++....
T Consensus 108 ---~~~P~~~lid~~G~i~~~--------~~~~~~l~~~l~~l~~~~~~~ 146 (152)
T 2lrn_A 108 ---VGFPHIILVDPEGKIVAK--------ELRGDDLYNTVEKFVNGAKEG 146 (152)
T ss_dssp ---CSSCEEEEECTTSEEEEE--------CCCTTHHHHHHHHHHTSSSSC
T ss_pred ---CcCCeEEEECCCCeEEEe--------eCCHHHHHHHHHHHHhhcccc
Confidence 468999999988753321 134578999999998876554
|
| >3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=95.62 E-value=0.058 Score=46.20 Aligned_cols=95 Identities=19% Similarity=0.334 Sum_probs=67.9
Q ss_pred ceecCChHHHHHH-HHhcCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeec-ccchhhHhhcCCCCCCeEE
Q 020623 29 VSILNSDAEVSDF-VENAGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAK-DFSEDTMVLYDFDKVPALV 98 (323)
Q Consensus 29 v~~i~s~~~l~~f-l~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~-~~~~~~~~~~~~~~~p~iv 98 (323)
+..+ |.++++.. ++.++ +++|-|... ...+.+++.++.+.+.|..++ +...+++.+|++...|+++
T Consensus 14 ~~~l-t~~~f~~~v~~~~k---~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~ 89 (222)
T 3dxb_A 14 IIHL-TDDSFDTDVLKADG---AILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLL 89 (222)
T ss_dssp CEEC-CTTTHHHHHTTCSS---CEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCTTTGGGGTCCSBSEEE
T ss_pred ceeC-CHHHHHHHHHhcCC---EEEEEEECCcCHHHHHHHHHHHHHHHHhcCCcEEEEEECCCCHHHHHHcCCCcCCEEE
Confidence 5556 56888774 44444 577777543 247888999998777676553 2356788899999999999
Q ss_pred EecCCCCCCccccCCCCHHHHHHHHHhhcC
Q 020623 99 ALQPSYNEHNIFYGPFDEEFLEEFIKQNFL 128 (323)
Q Consensus 99 v~k~~~~~~~~y~g~~~~~~L~~fI~~~~~ 128 (323)
+++++ .....+.|..+.+.|.+||....-
T Consensus 90 ~~~~G-~~~~~~~G~~~~~~l~~~l~~~l~ 118 (222)
T 3dxb_A 90 LFKNG-EVAATKVGALSKGQLKEFLDANLA 118 (222)
T ss_dssp EEETT-EEEEEEESCCCHHHHHHHHHHHSC
T ss_pred EEECC-eEEEEeccccChHHHHHHHHhhcc
Confidence 99742 122356788899999999998753
|
| >3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A* | Back alignment and structure |
|---|
Probab=95.60 E-value=0.12 Score=50.40 Aligned_cols=107 Identities=9% Similarity=0.075 Sum_probs=77.5
Q ss_pred CeeecChhhHHHhh-cCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC----eEEEEEcCc--chhhHhhhcCCcCCC
Q 020623 130 LSVPINQDTLNLLK-DDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE----LVFCYVGIK--QFADFADTFEANKKS 202 (323)
Q Consensus 130 lv~~~t~~~~~~~~-~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~----l~F~~vd~~--~~~~~~~~~gl~~~~ 202 (323)
.|.+++.+++.... ..++++++.|... -=..-..+...+.++|+++++ +.|+.+|++ ..+.+++.||+ .
T Consensus 13 ~V~~Lt~~~f~~~v~~~~k~vlV~FyA~-WC~pCk~~~P~l~~la~~~~~~~~~v~~~~VD~d~d~~~~l~~~~~V---~ 88 (519)
T 3t58_A 13 PLTLLDADSVRPTVLGSSSAWAVEFFAS-WCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAEETNSAVCREFNI---A 88 (519)
T ss_dssp SSEEECTTTHHHHHSSCSSEEEEEEECT-TSHHHHHHHHHHHHHHHHHGGGTTTEEEEEEETTSGGGHHHHHHTTC---C
T ss_pred CcEECChHHHHHHHHhCCCeEEEEEECC-CCHHHHHHHHHHHHHHHHhhCcCCcEEEEEEECCccccHHHHHHcCC---c
Confidence 47788999998754 5557777777652 112345677888899988763 999999995 36788999999 5
Q ss_pred CCCeEEEEeC---Ccc-eeeccCCCCCCCCCCHHHHHHHHHHHHcCcc
Q 020623 203 KLPKMVVWDG---NEN-YLTVIGSESIDEEDQGSQISRFLEGYREGRT 246 (323)
Q Consensus 203 ~~P~ivI~~~---~~k-Y~~~~~~~~~~~~~t~~~I~~Fi~~~~~Gkl 246 (323)
..|.+++++. +++ .... -+..+.+.|.+||++++....
T Consensus 89 ~~PTl~~f~~g~~~G~~~~~~------~g~~~~~~L~~~l~~~l~~~~ 130 (519)
T 3t58_A 89 GFPTVRFFQAFTKNGSGATLP------GAGANVQTLRMRLIDALESHR 130 (519)
T ss_dssp SBSEEEEECTTCCSCCCEEEC------CSSCCHHHHHHHHHHHHTTCC
T ss_pred ccCEEEEEcCcccCCCceeEe------cCCCCHHHHHHHHHHHHhhcc
Confidence 8999999986 222 1111 123688999999999987544
|
| >3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.57 E-value=0.046 Score=42.20 Aligned_cols=76 Identities=16% Similarity=0.180 Sum_probs=55.1
Q ss_pred cEEEEecCC--------hhHHHHHHHhhcCceeEEeec-ccchhhHhhcCCCCCCeEEEecCCCCCCccccCCCCHHHHH
Q 020623 50 PLFIGFGLD--------ESVMSNLALKYKKKAWFAVAK-DFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLE 120 (323)
Q Consensus 50 ~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~-~~~~~~~~~~~~~~~p~ivv~k~~~~~~~~y~g~~~~~~L~ 120 (323)
+++|-|... ...+.+++.++.+++.|..++ +...+++.++++...|++++++++ .....+.|..+.++|.
T Consensus 44 ~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G-~~~~~~~G~~~~~~l~ 122 (128)
T 3ul3_B 44 VIVLYFFAKWCQACTMQSTEMDKLQKYYGKRIYLLKVDLDKNESLARKFSVKSLPTIILLKNK-TMLARKDHFVSSNDLI 122 (128)
T ss_dssp EEEEEEECTTCHHHHHHHHHHHHHHHHHGGGEEEEEEEGGGCHHHHHHTTCCSSSEEEEEETT-EEEEEESSCCCHHHHH
T ss_pred EEEEEEECCCCHHHHHHhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCCcCEEEEEECC-EEEEEecCCCCHHHHH
Confidence 567777543 246788898888777676553 235678889999999999999642 2223466888999999
Q ss_pred HHHHhh
Q 020623 121 EFIKQN 126 (323)
Q Consensus 121 ~fI~~~ 126 (323)
+||+++
T Consensus 123 ~~l~~~ 128 (128)
T 3ul3_B 123 ALIKKH 128 (128)
T ss_dssp HHHTTC
T ss_pred HHHHhC
Confidence 999764
|
| >3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=95.56 E-value=0.082 Score=40.96 Aligned_cols=86 Identities=9% Similarity=0.120 Sum_probs=57.0
Q ss_pred CCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCC--CeEEEEEcCcc-------------------------hhhHhhhcC
Q 020623 145 DKRKIVLAIVEDETEEKSQKLVTTLKAAASANR--ELVFCYVGIKQ-------------------------FADFADTFE 197 (323)
Q Consensus 145 ~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~--~l~F~~vd~~~-------------------------~~~~~~~~g 197 (323)
.++++++.|... .-..-......|.+++++++ ++.|+.++.+. ...+.+.||
T Consensus 33 ~gk~~ll~f~~~-~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 111 (145)
T 3erw_A 33 KGQKTILHFWTS-WCPPCKKELPQFQSFYDAHPSDSVKLVTVNLVNSEQNQQVVEDFIKANKLTFPIVLDSKGELMKEYH 111 (145)
T ss_dssp TTSEEEEEEECS-SCHHHHHHHHHHHHHHHHCCCSSEEEEEEECGGGSSCHHHHHHHHHHTTCCSCEEECSSSHHHHHTT
T ss_pred CCCEEEEEEECC-CCHHHHHHHHHHHHHHHHcCCCCEEEEEEEccCCcCCHHHHHHHHHHcCCceeEEEcCchhHHHhcC
Confidence 456777777653 22334567788899999988 38888777642 234667788
Q ss_pred CcCCCCCCeEEEEeCCcceeeccCCCCCCCCCCHHHHHHHHH
Q 020623 198 ANKKSKLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLE 239 (323)
Q Consensus 198 l~~~~~~P~ivI~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~ 239 (323)
+ ...|.++++|.+++....- .+..+.+.|.++|+
T Consensus 112 v---~~~P~~~lid~~G~i~~~~-----~g~~~~~~l~~~l~ 145 (145)
T 3erw_A 112 I---ITIPTSFLLNEKGEIEKTK-----IGPMTAEQLKEWTE 145 (145)
T ss_dssp C---CEESEEEEECTTCCEEEEE-----ESCCCHHHHHHHHC
T ss_pred c---CccCeEEEEcCCCcEEEEE-----cCCcCHHHHHHhhC
Confidence 8 4689999999876432110 23467888888763
|
| >3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=95.52 E-value=0.1 Score=41.91 Aligned_cols=89 Identities=12% Similarity=0.199 Sum_probs=58.6
Q ss_pred CCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCCeEEEEEcCc------------------ch-----------------
Q 020623 145 DKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIK------------------QF----------------- 189 (323)
Q Consensus 145 ~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~l~F~~vd~~------------------~~----------------- 189 (323)
.++++++.|.... =..-......|.+++++++++.|+.++.+ .-
T Consensus 36 ~gk~~lv~F~~~~-C~~C~~~~~~l~~l~~~~~~v~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (165)
T 3ha9_A 36 GGDVVILWFMAAW-CPSCVYMADLLDRLTEKYREISVIAIDFWTAEALKALGLNKPGYPPPDTPEMFRKFIANYGDPSWI 114 (165)
T ss_dssp CSSEEEEEEECTT-CTTHHHHHHHHHHHHHHCTTEEEEEEECCSHHHHHHHTCCSTTSCCCCCHHHHHHHHHHHSCTTSE
T ss_pred CCCEEEEEEECCC-CcchhhhHHHHHHHHHHcCCcEEEEEEecccccccccccccccCCCCCCHHHHHHHHHHcCCCCee
Confidence 3567777676531 12245666788888888888777777654 11
Q ss_pred -----hhHhhhcCCcCCCCCCeEEEEeCCcceeeccCCCCCCCCC-CHHHHHHHHHHHHcC
Q 020623 190 -----ADFADTFEANKKSKLPKMVVWDGNENYLTVIGSESIDEED-QGSQISRFLEGYREG 244 (323)
Q Consensus 190 -----~~~~~~~gl~~~~~~P~ivI~~~~~kY~~~~~~~~~~~~~-t~~~I~~Fi~~~~~G 244 (323)
..+.+.||+ ...|.++++|.+++... .| .. +.+.|.++|+.++.|
T Consensus 115 ~~~d~~~~~~~~~v---~~~P~~~lid~~G~i~~-~g------~~~~~~~l~~~l~~l~~g 165 (165)
T 3ha9_A 115 MVMDDGSLVEKFNV---RSIDYIVIMDKSSNVLY-AG------TTPSLGELESVIKSVQGG 165 (165)
T ss_dssp EEECCSHHHHHTTC---CSSSEEEEEETTCCEEE-EE------ESCCHHHHHHHHHHC---
T ss_pred EEeChHHHHHHhCC---CCceEEEEEcCCCcEEE-eC------CCCCHHHHHHHHHHHhcC
Confidence 134556677 57899999999876544 22 24 789999999988765
|
| >1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A | Back alignment and structure |
|---|
Probab=95.44 E-value=0.094 Score=41.61 Aligned_cols=96 Identities=16% Similarity=0.168 Sum_probs=63.8
Q ss_pred ceecCChHHHHHHHHh-cCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeec-ccchhhHhhcCCCCCCeEE
Q 020623 29 VSILNSDAEVSDFVEN-AGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAK-DFSEDTMVLYDFDKVPALV 98 (323)
Q Consensus 29 v~~i~s~~~l~~fl~~-~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~-~~~~~~~~~~~~~~~p~iv 98 (323)
+..+.+.++++..+.+ .+. +++|-|... ...+.+++.++.+.+.|..++ +...+++.++++...|+++
T Consensus 5 l~~i~~~~~~~~~v~~~~~k--~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~i~~~Pt~~ 82 (142)
T 1qgv_A 5 LPHLHNGWQVDQAILSEEDR--VVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYELYDPCTVM 82 (142)
T ss_dssp SCBCCSHHHHHHHHHTCSSS--EEEEEEECTTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTCCTTTTSSCSCSSCEEE
T ss_pred HhccCCHHHHHHHHHhcCCC--EEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEccccCHHHHHHcCCCCCCEEE
Confidence 4567788999876654 332 577877643 247788999887777776553 2345678899998999999
Q ss_pred EecCCCCCC--------ccccCCCC-HHHHHHHHHhh
Q 020623 99 ALQPSYNEH--------NIFYGPFD-EEFLEEFIKQN 126 (323)
Q Consensus 99 v~k~~~~~~--------~~y~g~~~-~~~L~~fI~~~ 126 (323)
+|+++..-. ....|..+ .++|.++|...
T Consensus 83 ~~~~G~~v~~~~g~~~~~~~~g~~~~~~~l~~~i~~~ 119 (142)
T 1qgv_A 83 FFFRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETV 119 (142)
T ss_dssp EEETTEEEEEECC------CCSCCSCHHHHHHHHHHH
T ss_pred EEECCcEEEEecCCCCcceeeeecCcHHHHHHHHHHH
Confidence 997531111 01334444 78888888754
|
| >2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A | Back alignment and structure |
|---|
Probab=95.39 E-value=0.13 Score=38.27 Aligned_cols=93 Identities=16% Similarity=0.146 Sum_probs=62.3
Q ss_pred CceecCChHHHHHHHHh-cCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeecc--cchhhHhhcCCCCCCe
Q 020623 28 DVSILNSDAEVSDFVEN-AGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAKD--FSEDTMVLYDFDKVPA 96 (323)
Q Consensus 28 ~v~~i~s~~~l~~fl~~-~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~~--~~~~~~~~~~~~~~p~ 96 (323)
.+..|+ .+++++.+.. .+. +++|-|... ...+.+++.++.+ +.|...+. ...+++.++++...|+
T Consensus 6 ~v~~l~-~~~~~~~~~~~~~~--~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~~~~~~~~~~v~~~Pt 81 (111)
T 2pu9_C 6 KVTEVN-KDTFWPIVKAAGDK--PVVLDMFTQWCGPSKAMAPKYEKLAEEYLD-VIFLKLDCNQENKTLAKELGIRVVPT 81 (111)
T ss_dssp SEEEEC-TTTHHHHHTTCTTS--CEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEECSSTTHHHHHHHCCSBSSE
T ss_pred ccEEec-hHHHHHHHHhcCCC--EEEEEEECCcCHhHHHHCHHHHHHHHHCCC-eEEEEEecCcchHHHHHHcCCCeeeE
Confidence 467785 4888888874 222 567777543 2467788888764 55554432 3567888999988999
Q ss_pred EEEecCCCCCCccccCCCCHHHHHHHHHhh
Q 020623 97 LVALQPSYNEHNIFYGPFDEEFLEEFIKQN 126 (323)
Q Consensus 97 ivv~k~~~~~~~~y~g~~~~~~L~~fI~~~ 126 (323)
+++++++ .....+.|. ..+.|.+||...
T Consensus 82 ~~~~~~G-~~~~~~~G~-~~~~l~~~l~~~ 109 (111)
T 2pu9_C 82 FKILKEN-SVVGEVTGA-KYDKLLEAIQAA 109 (111)
T ss_dssp EEEESSS-SEEEEEESS-CHHHHHHHHHHH
T ss_pred EEEEeCC-cEEEEEcCC-CHHHHHHHHHHh
Confidence 8888652 112235576 478899999764
|
| >3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls} | Back alignment and structure |
|---|
Probab=95.37 E-value=0.18 Score=39.51 Aligned_cols=95 Identities=8% Similarity=0.084 Sum_probs=58.6
Q ss_pred CCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC--eEEEEEcCcchh----------------------hHhhhcCCcCC
Q 020623 146 KRKIVLAIVEDETEEKSQKLVTTLKAAASANRE--LVFCYVGIKQFA----------------------DFADTFEANKK 201 (323)
Q Consensus 146 ~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~--l~F~~vd~~~~~----------------------~~~~~~gl~~~ 201 (323)
++++++.|.... -..-......|.++++++++ +.++.++.+.-. .+.+.||+
T Consensus 28 gk~vll~f~~~~-C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v--- 103 (152)
T 3gl3_A 28 GSVVYLDFWASW-CGPCRQSFPWMNQMQAKYKAKGFQVVAVNLDAKTGDAMKFLAQVPAEFTVAFDPKGQTPRLYGV--- 103 (152)
T ss_dssp TSEEEEEEECTT-CTHHHHHHHHHHHHHHHHGGGTEEEEEEECCSSHHHHHHHHHHSCCCSEEEECTTCHHHHHTTC---
T ss_pred CCEEEEEEECCc-CHHHHHHHHHHHHHHHHhhcCCeEEEEEECCCCHHHHHHHHHHcCCCCceeECCcchhHHHcCC---
Confidence 567777666431 12245566778888888764 777777665322 34456777
Q ss_pred CCCCeEEEEeCCcc--eeeccCCCCCCCCCCHHHHHHHHHHHHcCccccc
Q 020623 202 SKLPKMVVWDGNEN--YLTVIGSESIDEEDQGSQISRFLEGYREGRTEQK 249 (323)
Q Consensus 202 ~~~P~ivI~~~~~k--Y~~~~~~~~~~~~~t~~~I~~Fi~~~~~Gkl~~~ 249 (323)
...|.++++|.+++ +... | ....+.+.|.++|+..+.+.-.+.
T Consensus 104 ~~~P~~~lid~~G~i~~~~~-g----~~~~~~~~l~~~i~~~~~~~~~~~ 148 (152)
T 3gl3_A 104 KGMPTSFLIDRNGKVLLQHV-G----FRPADKEALEQQILAALGGNEGHH 148 (152)
T ss_dssp CSSSEEEEECTTSBEEEEEE-S----CCTTTHHHHHHHHHHHTC------
T ss_pred CCCCeEEEECCCCCEEEEEc-c----CCCcCHHHHHHHHHHHHccccccc
Confidence 57899999998764 3332 2 123467899999999988765543
|
| >2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6 | Back alignment and structure |
|---|
Probab=95.36 E-value=0.027 Score=48.48 Aligned_cols=97 Identities=16% Similarity=0.195 Sum_probs=64.8
Q ss_pred ceecCChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeecccchhhHhhcCCCCCCeEEEe
Q 020623 29 VSILNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAKDFSEDTMVLYDFDKVPALVAL 100 (323)
Q Consensus 29 v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~~~~~~~~~~~~~~~~p~ivv~ 100 (323)
|..|.+.+++.+.+.+..-..+++|-|+.. ...+.++|.+|. .+.|..++....+++.+|++...|++++|
T Consensus 101 v~~i~~~~~f~~~v~~~~~~k~vvV~F~a~wC~~C~~l~p~l~~la~~~~-~v~f~~vd~~~~~l~~~~~i~~~PTl~~~ 179 (217)
T 2trc_P 101 VYELETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEYP-MVKFCKIRASNTGAGDRFSSDVLPTLLVY 179 (217)
T ss_dssp EEECCSHHHHHHHHHHSCTTCEEEEEEECTTSTTHHHHHHHHHHHHTTCT-TSEEEEEEHHHHTCSTTSCGGGCSEEEEE
T ss_pred EEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCccHHHHHHHHHHHHHHCC-CeEEEEEECCcHHHHHHCCCCCCCEEEEE
Confidence 778878899999887653111567777542 247788898875 56666553224456778888889999999
Q ss_pred cCCCCCCccccC-------CCCHHHHHHHHHhhc
Q 020623 101 QPSYNEHNIFYG-------PFDEEFLEEFIKQNF 127 (323)
Q Consensus 101 k~~~~~~~~y~g-------~~~~~~L~~fI~~~~ 127 (323)
+++ .....+.| .++.+.|++||..+.
T Consensus 180 ~~G-~~v~~~~G~~~~~g~~~~~~~Le~~L~~~g 212 (217)
T 2trc_P 180 KGG-ELISNFISVAEQFAEDFFAADVESFLNEYG 212 (217)
T ss_dssp ETT-EEEEEETTGGGGSCSSCCHHHHHHHHHTTT
T ss_pred ECC-EEEEEEeCCcccCcccCCHHHHHHHHHHcC
Confidence 853 11112333 345689999998764
|
| >3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.27 E-value=0.066 Score=41.38 Aligned_cols=96 Identities=19% Similarity=0.107 Sum_probs=60.9
Q ss_pred CceecCChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeecccchhhHhhcCCCCCCeEEE
Q 020623 28 DVSILNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAKDFSEDTMVLYDFDKVPALVA 99 (323)
Q Consensus 28 ~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~~~~~~~~~~~~~~~~p~ivv 99 (323)
.+..| +.+++.+.+.+++...+++|-|... ...+.++|.+|. ++.|...+ . ++.+.+|++...|++++
T Consensus 4 ~v~~i-t~~~f~~~v~~~~~~~~vvv~F~a~wc~~C~~~~p~l~~la~~~~-~v~f~kvd-~-d~~~~~~~v~~~PT~~~ 79 (118)
T 3evi_A 4 ELREI-SGNQYVNEVTNAEEDVWVIIHLYRSSIPMCLLVNQHLSLLARKFP-ETKFVKAI-V-NSCIQHYHDNCLPTIFV 79 (118)
T ss_dssp SCEEC-CGGGHHHHTTTCCTTCEEEEEEECTTSHHHHHHHHHHHHHHHHCT-TSEEEEEE-G-GGTSTTCCGGGCSEEEE
T ss_pred ceEEe-CHHHHHHHHHhcCCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC-CCEEEEEE-h-HHhHHHCCCCCCCEEEE
Confidence 35678 4577776554433111467777543 247889999986 56776653 1 23356888888999999
Q ss_pred ecCCCCC-Cc----cccC-CCCHHHHHHHHHhhc
Q 020623 100 LQPSYNE-HN----IFYG-PFDEEFLEEFIKQNF 127 (323)
Q Consensus 100 ~k~~~~~-~~----~y~g-~~~~~~L~~fI~~~~ 127 (323)
|+++..- +. ..-| .++.++|+.||.++.
T Consensus 80 fk~G~~v~~~~G~~~~gg~~~~~~~le~~L~~~g 113 (118)
T 3evi_A 80 YKNGQIEAKFIGIIECGGINLKLEELEWKLAEVG 113 (118)
T ss_dssp EETTEEEEEEESTTTTTCSSCCHHHHHHHHHTTT
T ss_pred EECCEEEEEEeChhhhCCCCCCHHHHHHHHHHcC
Confidence 9974211 11 1112 578999999998753
|
| >2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=95.24 E-value=0.15 Score=39.81 Aligned_cols=95 Identities=19% Similarity=0.148 Sum_probs=62.4
Q ss_pred CceecCChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeecccchhhHhhcCCCCCCeEEE
Q 020623 28 DVSILNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAKDFSEDTMVLYDFDKVPALVA 99 (323)
Q Consensus 28 ~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~~~~~~~~~~~~~~~~p~ivv 99 (323)
.+..| +.+++++.+..+....+++|-|... ...+.++|.++. ++.|..++. + +...+|++...|++++
T Consensus 11 ~v~~i-~~~~~~~~v~~~~~~~~vvv~f~a~wC~~C~~~~p~l~~la~~~~-~v~~~~vd~-~-~~~~~~~i~~~Pt~~~ 86 (135)
T 2dbc_A 11 ELREI-SGNQYVNEVTNAEKDLWVVIHLYRSSVPMCLVVNQHLSVLARKFP-ETKFVKAIV-N-SCIEHYHDNCLPTIFV 86 (135)
T ss_dssp SCEEC-CHHHHHHHTTTCCSSCEEEEEECCTTCHHHHHHHHHHHHHHHHCS-SEEEEEECC-S-SSCSSCCSSCCSEEEE
T ss_pred ceEEc-CHHHHHHHHHhcCCCCEEEEEEECCCChHHHHHHHHHHHHHHHCC-CcEEEEEEh-h-cCcccCCCCCCCEEEE
Confidence 37778 7899988776543111567777643 246788898875 566665532 1 2235788888999999
Q ss_pred ecCCCCCCccccCC-------CCHHHHHHHHHhhc
Q 020623 100 LQPSYNEHNIFYGP-------FDEEFLEEFIKQNF 127 (323)
Q Consensus 100 ~k~~~~~~~~y~g~-------~~~~~L~~fI~~~~ 127 (323)
|+++ .....+.|. ++.+.|++||.++.
T Consensus 87 ~~~G-~~v~~~~G~~~~~~~~~~~~~l~~~l~~~~ 120 (135)
T 2dbc_A 87 YKNG-QIEGKFIGIIECGGINLKLEELEWKLSEVG 120 (135)
T ss_dssp ESSS-SCSEEEESTTTTTCTTCCHHHHHHHHHHHT
T ss_pred EECC-EEEEEEEeEEeeCCCcCCHHHHHHHHHHcC
Confidence 9853 222223342 47899999999874
|
| >1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C | Back alignment and structure |
|---|
Probab=95.13 E-value=0.079 Score=46.56 Aligned_cols=97 Identities=19% Similarity=0.140 Sum_probs=65.8
Q ss_pred CceecCChHHHHHHHHhc--CCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeecccchhhHhhcCCCCCCeE
Q 020623 28 DVSILNSDAEVSDFVENA--GTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAKDFSEDTMVLYDFDKVPAL 97 (323)
Q Consensus 28 ~v~~i~s~~~l~~fl~~~--~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~~~~~~~~~~~~~~~~p~i 97 (323)
.|..|.+.+++.+.+... +. +++|-|+.. .+.+.++|.+|.+ +.|..++....+++.+|++...|++
T Consensus 113 ~V~ei~s~~~f~~~v~~~~~~k--~VvV~Fya~wC~~Ck~l~p~l~~La~~~~~-v~f~kVd~d~~~l~~~~~I~~~PTl 189 (245)
T 1a0r_P 113 FVYELESGEQFLETIEKEQKIT--TIVVHIYEDGIKGCDALNSSLICLAAEYPM-VKFCKIKASNTGAGDRFSSDVLPTL 189 (245)
T ss_dssp SEEECCSHHHHHHHHHSSCTTC--EEEEEEECTTSTTHHHHHHHHHHHHHHCTT-SEEEEEEHHHHCCTTSSCTTTCSEE
T ss_pred eEEEeCCHHHHHHHHHHhcCCC--EEEEEEECCCChHHHHHHHHHHHHHHHCCC-CEEEEEeCCcHHHHHHCCCCCCCEE
Confidence 478887889999988653 22 567777542 2478899998864 6666553222456778898889999
Q ss_pred EEecCCCC-CCc-cc---cC-CCCHHHHHHHHHhhc
Q 020623 98 VALQPSYN-EHN-IF---YG-PFDEEFLEEFIKQNF 127 (323)
Q Consensus 98 vv~k~~~~-~~~-~y---~g-~~~~~~L~~fI~~~~ 127 (323)
++|+++.. ... -+ -| .++.+.|+.||..+.
T Consensus 190 l~~~~G~~v~~~vG~~~~~g~~~~~e~Le~~L~~~g 225 (245)
T 1a0r_P 190 LVYKGGELLSNFISVTEQLAEEFFTGDVESFLNEYG 225 (245)
T ss_dssp EEEETTEEEEEETTGGGGSCTTCCHHHHHHHHHTTT
T ss_pred EEEECCEEEEEEeCCcccccccccHHHHHHHHHHcC
Confidence 99985321 111 12 13 367889999999875
|
| >1un2_A DSBA, thiol-disulfide interchange protein; disulfide oxidoreductase, oxidoreductase, protein disulfide isomerase, protein folding, thioredoxin; 2.4A {Escherichia coli} SCOP: c.47.1.13 | Back alignment and structure |
|---|
Probab=95.02 E-value=0.001 Score=56.73 Aligned_cols=84 Identities=14% Similarity=0.075 Sum_probs=54.5
Q ss_pred hhHhhhcCCcCCCCCCeEEEEeCCcceeeccCCCCCCCCCCHHHHHHHHHHHHcCcccccccCC--CCCCCCeeEEeccC
Q 020623 190 ADFADTFEANKKSKLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEGYREGRTEQKKVAG--PSIFGFVNSLIGIR 267 (323)
Q Consensus 190 ~~~~~~~gl~~~~~~P~ivI~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~~~~~Gkl~~~~kSe--P~~~g~v~~vVg~~ 267 (323)
.+.++.+|+ . ..|.++| +++|.... ..++.+++.+|++++++ +.++++|+ |..... .++|.+
T Consensus 40 ~~~a~~~gi-~--gvP~fvi---ngk~~~~~------~~~~~~~~~~f~~~~~~--l~~~L~s~~~p~~~~~--~~~g~~ 103 (197)
T 1un2_A 40 EKAAADVQL-R--GVPAMFV---NGKYQLNP------QGMDTSNMDVFVQQYAD--TVKYLSEKKGGGTGAQ--YEDGKQ 103 (197)
T ss_dssp HHHHHHTTC-C--SSSEEEE---TTTEEECG------GGSCCSSHHHHHHHHHH--HHHHHTC-----------CCBTTT
T ss_pred HHHHHHcCC-C--cCCEEEE---cceEecCc------cccccccHHHHHHHHHH--HHHHHHhCcccccccc--cCCCCC
Confidence 345678899 3 5899977 66776531 23566789999999999 99999998 443311 346777
Q ss_pred cceehHH---HHHHHHHHHHhcCCC
Q 020623 268 SVYIIVF---MVAMLMLLRTLGKDD 289 (323)
Q Consensus 268 ~~~iv~~---~~~~~~~~~~~~~~~ 289 (323)
+..+..- -+.++.+.-++||+|
T Consensus 104 y~~l~~p~~~~~~vveFf~~~C~~C 128 (197)
T 1un2_A 104 YTTLEKPVAGAPQVLEFFSFFCPHC 128 (197)
T ss_dssp EEECSSCCTTCCSEEEEECTTCHHH
T ss_pred ceEccCCCCCCCEEEEEECCCChhH
Confidence 6544321 145666777888888
|
| >1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=94.99 E-value=0.2 Score=38.05 Aligned_cols=95 Identities=16% Similarity=0.125 Sum_probs=62.4
Q ss_pred CCCceecCChHHHHHHHHh-cCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeecc--cchhhHhhcCCCCC
Q 020623 26 APDVSILNSDAEVSDFVEN-AGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAKD--FSEDTMVLYDFDKV 94 (323)
Q Consensus 26 ~p~v~~i~s~~~l~~fl~~-~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~~--~~~~~~~~~~~~~~ 94 (323)
...+..++ .+++++.+.. .+. +++|-|... .+.+.+++.++.+ +.|...+. ...+++.++++...
T Consensus 17 ~~~v~~l~-~~~~~~~~~~~~~~--~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~-~~~~~vd~~~~~~~~~~~~~v~~~ 92 (124)
T 1faa_A 17 VGKVTEVN-KDTFWPIVKAAGDK--PVVLDMFTQWCGPCKAMAPKYEKLAEEYLD-VIFLKLDCNQENKTLAKELGIRVV 92 (124)
T ss_dssp TTSEEEEC-TTTHHHHHHHTTTS--CEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEECSSTTHHHHHHHCCSSS
T ss_pred CCceEEec-chhHHHHHHhcCCC--EEEEEEECCcCHhHHHHhHHHHHHHHHCCC-CEEEEEecCcchHHHHHHcCCCee
Confidence 34577785 4778877764 222 567777543 2467788888763 55554432 34678889999999
Q ss_pred CeEEEecCCCCCCccccCCCCHHHHHHHHHhh
Q 020623 95 PALVALQPSYNEHNIFYGPFDEEFLEEFIKQN 126 (323)
Q Consensus 95 p~ivv~k~~~~~~~~y~g~~~~~~L~~fI~~~ 126 (323)
|++++++++ .....+.|.. .++|.+||.+.
T Consensus 93 Pt~~~~~~G-~~~~~~~G~~-~~~l~~~i~~~ 122 (124)
T 1faa_A 93 PTFKILKEN-SVVGEVTGAK-YDKLLEAIQAA 122 (124)
T ss_dssp SEEEEEETT-EEEEEEESSC-HHHHHHHHHHH
T ss_pred eEEEEEeCC-cEEEEEcCCC-HHHHHHHHHHh
Confidence 999998752 1122355764 78899999864
|
| >3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=94.97 E-value=0.2 Score=39.33 Aligned_cols=96 Identities=13% Similarity=0.131 Sum_probs=58.2
Q ss_pred CCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC--eEEEEEcCcch-----------------------hhHhhhcCCc
Q 020623 145 DKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE--LVFCYVGIKQF-----------------------ADFADTFEAN 199 (323)
Q Consensus 145 ~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~--l~F~~vd~~~~-----------------------~~~~~~~gl~ 199 (323)
.++++++.|... .-..-......|.++++++++ +.|+.++.+.. ..+.+.||+
T Consensus 27 ~gk~vll~f~~~-~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v- 104 (154)
T 3kcm_A 27 KGQVVIVNFWAT-WCPPCREEIPSMMRLNAAMAGKPFRMLCVSIDEGGKVAVEEFFRKTGFTLPVLLDADKRVGKLYGT- 104 (154)
T ss_dssp TTSEEEEEEECT-TCHHHHHHHHHHHHHHHHTTTSSEEEEEEECCTTHHHHHHHHHHHHCCCCCEEECTTCHHHHHHTC-
T ss_pred CCCEEEEEEECC-CCHHHHHHHHHHHHHHHHhccCCeEEEEEEcCCcchHHHHHHHHHcCCCeeEEecCchHHHHHhCC-
Confidence 356777777653 222335666788888888875 77777776532 125566788
Q ss_pred CCCCCCeEEEEeCCcc--eeeccCCCCCCCCCCHHHHHHHHHHHHcCccccc
Q 020623 200 KKSKLPKMVVWDGNEN--YLTVIGSESIDEEDQGSQISRFLEGYREGRTEQK 249 (323)
Q Consensus 200 ~~~~~P~ivI~~~~~k--Y~~~~~~~~~~~~~t~~~I~~Fi~~~~~Gkl~~~ 249 (323)
...|.+++++.+++ +... | ....+.+.+.++|+.+..+.-.+.
T Consensus 105 --~~~P~~~lid~~G~i~~~~~-g----~~~~~~~~l~~~l~~l~~~~~~~~ 149 (154)
T 3kcm_A 105 --TGVPETFVIDRHGVILKKVV-G----AMEWDHPEVIAFLNNELSKAREGH 149 (154)
T ss_dssp --CSBCEEEEECTTSBEEEEEE-S----CCCTTSHHHHHHHHTC--------
T ss_pred --CCCCeEEEECCCCcEEEEEc-C----CCccccHHHHHHHHHHHHHhhhcc
Confidence 57899999998764 3222 3 123467899999998877655443
|
| >3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=94.88 E-value=0.091 Score=41.03 Aligned_cols=96 Identities=10% Similarity=0.068 Sum_probs=62.9
Q ss_pred CceecCChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeec-ccchhhHhhcCCCCCCeEE
Q 020623 28 DVSILNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAK-DFSEDTMVLYDFDKVPALV 98 (323)
Q Consensus 28 ~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~-~~~~~~~~~~~~~~~p~iv 98 (323)
.+..|++.++++.+++...- .+++|-|... ...+.+++..+ .+.|..++ +...+++.+|++...|+++
T Consensus 21 ~v~~l~~~~~~~~~l~~~~~-k~vvv~F~a~wC~~C~~~~p~l~~l~~~~--~v~~~~vd~~~~~~l~~~~~v~~~Pt~~ 97 (133)
T 3cxg_A 21 IYIELKNTGSLNQVFSSTQN-SSIVIKFGAVWCKPCNKIKEYFKNQLNYY--YVTLVDIDVDIHPKLNDQHNIKALPTFE 97 (133)
T ss_dssp EEEECCCTTHHHHHHTC-CC-SEEEEEEECTTCHHHHHTHHHHHGGGGTE--ECEEEEEETTTCHHHHHHTTCCSSSEEE
T ss_pred cEEEecChhHHHHHHHhcCC-CEEEEEEECCCCHHHHHHHHHHHHHHHhc--CEEEEEEeccchHHHHHhcCCCCCCEEE
Confidence 47888888999998876531 1567777543 23566666555 34554442 2356788899999999999
Q ss_pred Eec--CCCC-CCccccCCCCHHHHHHHHHhhc
Q 020623 99 ALQ--PSYN-EHNIFYGPFDEEFLEEFIKQNF 127 (323)
Q Consensus 99 v~k--~~~~-~~~~y~g~~~~~~L~~fI~~~~ 127 (323)
+|+ ++.. ....+.|. +.++|.+||....
T Consensus 98 ~~~~~~g~g~~~~~~~G~-~~~~l~~~l~~~l 128 (133)
T 3cxg_A 98 FYFNLNNEWVLVHTVEGA-NQNDIEKAFQKYC 128 (133)
T ss_dssp EEEEETTEEEEEEEEESC-CHHHHHHHHHHHS
T ss_pred EEEecCCCeEEEEEEcCC-CHHHHHHHHHHHH
Confidence 996 3211 12235576 7889999998753
|
| >3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=94.83 E-value=0.23 Score=38.57 Aligned_cols=87 Identities=13% Similarity=0.169 Sum_probs=55.3
Q ss_pred CCcEEEEEEeCCChhHHHHHHHHHHHHHHhC-CC--eEEEEEcCcc-------------------------hhhHhhhcC
Q 020623 146 KRKIVLAIVEDETEEKSQKLVTTLKAAASAN-RE--LVFCYVGIKQ-------------------------FADFADTFE 197 (323)
Q Consensus 146 ~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~-~~--l~F~~vd~~~-------------------------~~~~~~~~g 197 (323)
++++++.|.... =..-......|.++++++ ++ +.|+.++.+. ...++..||
T Consensus 33 gk~vll~F~~~~-C~~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 111 (148)
T 3fkf_A 33 NRYLLLNFWASW-CDPQPEANAELKRLNKEYKKNKNFAMLGISLDIDREAWETAIKKDTLSWDQVCDFTGLSSETAKQYA 111 (148)
T ss_dssp TSEEEEEEECGG-GCCCHHHHHHHHHHHHHTTTCTTEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHHHHHTT
T ss_pred CcEEEEEEECCC-CHHHHHHhHHHHHHHHHhcCCCCeEEEEEECCCCHHHHHHHHHHcCCCceEEEccCCcchHHHHhcC
Confidence 466666665421 111245556777788877 43 7777665543 225667888
Q ss_pred CcCCCCCCeEEEEeCCcceeeccCCCCCCCCCCHHHHHHHHHHHHcC
Q 020623 198 ANKKSKLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEGYREG 244 (323)
Q Consensus 198 l~~~~~~P~ivI~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~~~~~G 244 (323)
+ ...|.++++|.+++.... ..+.+.+.++++.+++.
T Consensus 112 v---~~~P~~~lid~~G~i~~~--------~~~~~~l~~~l~~ll~~ 147 (148)
T 3fkf_A 112 I---LTLPTNILLSPTGKILAR--------DIQGEALTGKLKELLKT 147 (148)
T ss_dssp C---CSSSEEEEECTTSBEEEE--------SCCHHHHHHHHHHHC--
T ss_pred C---CCcCEEEEECCCCeEEEe--------cCCHHHHHHHHHHHHcc
Confidence 8 578999999988754332 12778899999988653
|
| >3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=94.73 E-value=0.35 Score=38.17 Aligned_cols=90 Identities=8% Similarity=-0.010 Sum_probs=57.0
Q ss_pred CCcEEEEEEeCCChhHHHH-HHHHHHHHHHhCCC--eEEEEEcCc----------------------------chhh---
Q 020623 146 KRKIVLAIVEDETEEKSQK-LVTTLKAAASANRE--LVFCYVGIK----------------------------QFAD--- 191 (323)
Q Consensus 146 ~~~~v~~f~~~~~~e~~~~-~~~~l~~~A~~~~~--l~F~~vd~~----------------------------~~~~--- 191 (323)
++++++.|.... =..-.. ....|.++++++++ +.|+.++.+ ....
T Consensus 30 gk~vlv~F~a~~-C~~C~~e~~~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 108 (160)
T 3lor_A 30 GKVVVVEVFQML-CPGCVNHGVPQAQKIHRMIDESQVQVIGLHSVFEHHDVMTPEALKVFIDEFGIKFPVAVDMPREGQR 108 (160)
T ss_dssp TSEEEEEEECTT-CHHHHHTHHHHHHHHHHHSCTTTEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCSCEEEECCCTTCS
T ss_pred CCEEEEEEEcCC-CcchhhhhhHHHHHHHHHhCcCCcEEEEEeccccccccCCHHHHHHHHHHcCCCCcEEECCccccch
Confidence 467766666531 122344 46778888888874 777766531 0111
Q ss_pred ---HhhhcCCcCCCCCCeEEEEeCCcceeeccCCCCCCCCCCHHHHHHHHHHHHcC
Q 020623 192 ---FADTFEANKKSKLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEGYREG 244 (323)
Q Consensus 192 ---~~~~~gl~~~~~~P~ivI~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~~~~~G 244 (323)
+++.||+ ...|.++++|.+++....- .+..+.+.+.++|+.+++.
T Consensus 109 ~~~~~~~~~v---~~~P~~~lid~~G~i~~~~-----~g~~~~~~l~~~i~~ll~~ 156 (160)
T 3lor_A 109 IPSTMKKYRL---EGTPSIILADRKGRIRQVQ-----FGQVDDFVLGLLLGSLLSE 156 (160)
T ss_dssp SCHHHHHTTC---CSSSEEEEECTTSBEEEEE-----ESCCCHHHHHHHHHHHHTC
T ss_pred hhhHHHhccc---CccceEEEECCCCcEEEEe-----cCcCCHHHHHHHHHHHHhc
Confidence 5566777 4689999999876432210 1346788999999999875
|
| >4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=94.49 E-value=0.29 Score=37.10 Aligned_cols=88 Identities=11% Similarity=0.057 Sum_probs=55.9
Q ss_pred CCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC-eEEEEEcCc----------------------------chhhHhhh
Q 020623 145 DKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIK----------------------------QFADFADT 195 (323)
Q Consensus 145 ~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~-l~F~~vd~~----------------------------~~~~~~~~ 195 (323)
.++++++.|.... =..-......|.++++++++ +.++.++.. ....+.+.
T Consensus 21 ~gk~~lv~f~~~~-C~~C~~~~~~l~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 99 (138)
T 4evm_A 21 KGKKVYLKFWASW-CSICLASLPDTDEIAKEAGDDYVVLTVVSPGHKGEQSEADFKNWYKGLDYKNLPVLVDPSGKLLET 99 (138)
T ss_dssp TTSEEEEEECCTT-CHHHHHHHHHHHHHHHTCTTTEEEEEEECTTSTTCCCHHHHHHHHTTCCCTTCCEEECTTCHHHHH
T ss_pred CCCEEEEEEEcCc-CHHHHHHHHHHHHHHHHhCCCcEEEEEEcCCCCchhhHHHHHHHHhhcCCCCeeEEECcchHHHHH
Confidence 3577776666421 12345666788888888775 888877321 01235567
Q ss_pred cCCcCCCCCCeEEEEeCCcceeeccCCCCCCCCCCHHHHHHHHHHH
Q 020623 196 FEANKKSKLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEGY 241 (323)
Q Consensus 196 ~gl~~~~~~P~ivI~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~~~ 241 (323)
||+ ...|.++++|.+++..... .+..+.+.+.++|+.+
T Consensus 100 ~~v---~~~P~~~lid~~G~i~~~~-----~g~~~~~~l~~~l~~l 137 (138)
T 4evm_A 100 YGV---RSYPTQAFIDKEGKLVKTH-----PGFMEKDAILQTLKEL 137 (138)
T ss_dssp TTC---CSSSEEEEECTTCCEEEEE-----ESCCCHHHHHHHHHHC
T ss_pred cCc---ccCCeEEEECCCCcEEEee-----cCCCcHHHHHHHHHhh
Confidence 777 5689999999876432210 2346788899888763
|
| >3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=94.32 E-value=0.15 Score=39.81 Aligned_cols=93 Identities=8% Similarity=0.014 Sum_probs=63.4
Q ss_pred CceecCChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeec----------ccchhhHhhc
Q 020623 28 DVSILNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAK----------DFSEDTMVLY 89 (323)
Q Consensus 28 ~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~----------~~~~~~~~~~ 89 (323)
.+..+ +.+++++.++. . ++|-|... ...+.+++.++. +.|...+ +...+++.+|
T Consensus 17 ~v~~l-~~~~~~~~~~~-~----vlv~F~a~wC~~C~~~~p~l~~l~~~~~--v~~~~vd~~~~~~~~~~d~~~~l~~~~ 88 (135)
T 3emx_A 17 RLIYI-TPEEFRQLLQG-D----AILAVYSKTCPHCHRDWPQLIQASKEVD--VPIVMFIWGSLIGERELSAARLEMNKA 88 (135)
T ss_dssp EEEEC-CHHHHHHHHTS-S----EEEEEEETTCHHHHHHHHHHHHHHTTCC--SCEEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred ceeec-CHHHHHHHhCC-c----EEEEEECCcCHhhhHhChhHHHHHHHCC--CEEEEEECCCchhhhhhhhhHHHHHHc
Confidence 46677 67999998876 2 56666532 246778887775 5454432 1245677799
Q ss_pred CCCCCCeEEEecCCCCCCccccCCCCHHHHHHHHHhhcCC
Q 020623 90 DFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQNFLP 129 (323)
Q Consensus 90 ~~~~~p~ivv~k~~~~~~~~y~g~~~~~~L~~fI~~~~~P 129 (323)
++...|++++++++ .....+.|..+.+.+.+||+...-+
T Consensus 89 ~v~~~Pt~~~~~~G-~~v~~~~G~~~~~~~~~~i~~~~~~ 127 (135)
T 3emx_A 89 GVEGTPTLVFYKEG-RIVDKLVGATPWSLKVEKAREIYGG 127 (135)
T ss_dssp TCCSSSEEEEEETT-EEEEEEESCCCHHHHHHHHHHHC--
T ss_pred CCceeCeEEEEcCC-EEEEEEeCCCCHHHHHHHHHHHhCC
Confidence 99999999999842 2223466888999999999887643
|
| >2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae} | Back alignment and structure |
|---|
Probab=94.24 E-value=0.27 Score=39.31 Aligned_cols=92 Identities=16% Similarity=0.164 Sum_probs=57.4
Q ss_pred CCCcEEEEEE-eCCChhHHHHHHHHH---HHHHHhCCC-eEEEEEcCcch-----------hhHhhhcCCcCCCCCCeEE
Q 020623 145 DKRKIVLAIV-EDETEEKSQKLVTTL---KAAASANRE-LVFCYVGIKQF-----------ADFADTFEANKKSKLPKMV 208 (323)
Q Consensus 145 ~~~~~v~~f~-~~~~~e~~~~~~~~l---~~~A~~~~~-l~F~~vd~~~~-----------~~~~~~~gl~~~~~~P~iv 208 (323)
.++++++.|. .. -=..=..+...| .++++.+.. +.++.+|.+.. ..+++.||+ ...|.++
T Consensus 46 ~gk~vlv~F~ga~-wC~~C~~~~p~l~~~~~~~~~~~~~~~~v~vd~~~~~~~~~~~~~~~~~l~~~~~v---~~~Pt~~ 121 (154)
T 2ju5_A 46 DHKPIGLFFTGSD-WCMWCIKMQDQILQSSEFKHFAGVHLHMVEVDFPQKNHQPEEQRQKNQELKAQYKV---TGFPELV 121 (154)
T ss_dssp HCCCEEEEEECTT-TCHHHHHHHHHTTTSHHHHHHHHHHCEEEEEECCSSCCCCHHHHHHHHHHHHHTTC---CSSSEEE
T ss_pred CCCeEEEEEeCCC-CCHhHHHHHHHHhcCHHHHHHhcCcEEEEEecCccccCCChhhHhhHHHHHHHcCC---CCCCEEE
Confidence 3578877776 42 112223344444 555554433 88999998653 256788999 4699999
Q ss_pred EEeCCcceeeccCCCCCCCCCCHHHHHHHHHHHHcC
Q 020623 209 VWDGNENYLTVIGSESIDEEDQGSQISRFLEGYREG 244 (323)
Q Consensus 209 I~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~~~~~G 244 (323)
++|.+++.....|. .+.+.+.+.++|+.++..
T Consensus 122 ~~d~~G~~~~~~G~----~~~~~~~l~~~l~~~l~~ 153 (154)
T 2ju5_A 122 FIDAEGKQLARMGF----EPGGGAAYVSKVKSALKL 153 (154)
T ss_dssp EECTTCCEEEEECC----CTTCHHHHHHHHHHHHTC
T ss_pred EEcCCCCEEEEecC----CCCCHHHHHHHHHHHHhc
Confidence 99987643221131 123788999999988764
|
| >3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=94.24 E-value=0.45 Score=37.52 Aligned_cols=91 Identities=8% Similarity=-0.025 Sum_probs=58.0
Q ss_pred CCcEEEEEEeCCChhHHHHH-HHHHHHHHHhCCC--eEEEEEcCc----------------------------chh----
Q 020623 146 KRKIVLAIVEDETEEKSQKL-VTTLKAAASANRE--LVFCYVGIK----------------------------QFA---- 190 (323)
Q Consensus 146 ~~~~v~~f~~~~~~e~~~~~-~~~l~~~A~~~~~--l~F~~vd~~----------------------------~~~---- 190 (323)
++++++.|.... =..-... ...|.++++++++ +.|+.++.+ ...
T Consensus 28 gk~vlv~f~a~w-C~~C~~~~~~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 106 (158)
T 3eyt_A 28 GKVIVIEAFQML-CPGCVMHGIPLAQKVRAAFPEDKVAVLGLHTVFEHHEAMTPISLKAFLHEYRIKFPVGVDQPGDGAM 106 (158)
T ss_dssp TSEEEEEEECTT-CHHHHHTHHHHHHHHHHHSCTTTEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCSCEEEECCCSSSS
T ss_pred CCEEEEEEECCc-CcchhhhhhHHHHHHHHHhCcCCEEEEEEEecccccccCCHHHHHHHHHHcCCCceEEEcCccchhh
Confidence 567776666521 1223443 6788888888873 777766531 001
Q ss_pred -hHhhhcCCcCCCCCCeEEEEeCCcceeeccCCCCCCCCCCHHHHHHHHHHHHcCc
Q 020623 191 -DFADTFEANKKSKLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEGYREGR 245 (323)
Q Consensus 191 -~~~~~~gl~~~~~~P~ivI~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~~~~~Gk 245 (323)
.+++.||+ ...|.++++|.+++....- .+..+.+.+.++|+.+++..
T Consensus 107 ~~~~~~~~v---~~~P~~~lid~~G~i~~~~-----~g~~~~~~l~~~i~~ll~~~ 154 (158)
T 3eyt_A 107 PRTMAAYQM---RGTPSLLLIDKAGDLRAHH-----FGDVSELLLGAEIATLLGEA 154 (158)
T ss_dssp CHHHHHTTC---CSSSEEEEECTTSEEEEEE-----ESCCCHHHHHHHHHHHHTSC
T ss_pred HHHHHHcCC---CCCCEEEEECCCCCEEEEE-----eCCCCHHHHHHHHHHHhccC
Confidence 35566777 4689999999887432210 13467889999999998754
|
| >2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=94.00 E-value=0.23 Score=37.99 Aligned_cols=79 Identities=16% Similarity=0.077 Sum_probs=50.4
Q ss_pred cEEEEecCC--------hhHH---HHHHHhhcCceeEEeecc---cchhhHhhcCCCCCCeEEEecCCCCC-CccccCCC
Q 020623 50 PLFIGFGLD--------ESVM---SNLALKYKKKAWFAVAKD---FSEDTMVLYDFDKVPALVALQPSYNE-HNIFYGPF 114 (323)
Q Consensus 50 ~~vVgf~~~--------~~~f---~~~A~~~~~~~~F~~~~~---~~~~~~~~~~~~~~p~ivv~k~~~~~-~~~y~g~~ 114 (323)
+++|-|... ...+ ..++..+...+.+...+. ...+++.+|++...|+++++.+ .++ ...+.|..
T Consensus 29 ~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~v~~~Pt~~~~d~-~G~~~~~~~G~~ 107 (130)
T 2kuc_A 29 LLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNRHFVNLKMDMEKGEGVELRKKYGVHAYPTLLFINS-SGEVVYRLVGAE 107 (130)
T ss_dssp CEEEEECCTTCTHHHHHHHHGGGCHHHHHHHHHHSEEEEECSSSTTHHHHHHHTTCCSSCEEEEECT-TSCEEEEEESCC
T ss_pred eEEEEEECCCCccHHHHHHHhcCcHHHHHHHhcCeEEEEEecCCcchHHHHHHcCCCCCCEEEEECC-CCcEEEEecCCC
Confidence 567777542 1233 345544444454544421 2456788999989999999953 122 22456888
Q ss_pred CHHHHHHHHHhhcCC
Q 020623 115 DEEFLEEFIKQNFLP 129 (323)
Q Consensus 115 ~~~~L~~fI~~~~~P 129 (323)
+.++|.+||+...-|
T Consensus 108 ~~~~l~~~l~~~~~~ 122 (130)
T 2kuc_A 108 DAPELLKKVKLGVES 122 (130)
T ss_dssp CHHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHHHHh
Confidence 899999999987655
|
| >3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa} | Back alignment and structure |
|---|
Probab=93.97 E-value=0.29 Score=37.64 Aligned_cols=89 Identities=15% Similarity=0.212 Sum_probs=56.6
Q ss_pred CChHHHHHHHH----hcCCcccEEEEecCC--------hhHHH--HHHHhhcCceeEEeec----ccchhhHhhcCC---
Q 020623 33 NSDAEVSDFVE----NAGTFFPLFIGFGLD--------ESVMS--NLALKYKKKAWFAVAK----DFSEDTMVLYDF--- 91 (323)
Q Consensus 33 ~s~~~l~~fl~----~~~~~~~~vVgf~~~--------~~~f~--~~A~~~~~~~~F~~~~----~~~~~~~~~~~~--- 91 (323)
.+..++++.+. .++ +++|-|... ...+. +++..+.+.+.|..++ +...+++.+|++
T Consensus 13 ~~~~~~~~~~~~~~~~~k---~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~~~vd~~~~~~~~~l~~~~~v~~~ 89 (133)
T 3fk8_A 13 DAWTQVKKALAAGKRTHK---PTLLVFGANWCTDCRALDKSLRNQKNTALIAKHFEVVKIDVGNFDRNLELSQAYGDPIQ 89 (133)
T ss_dssp CHHHHHHHHHHHHHHHTC---CEEEEEECTTCHHHHHHHHHHTSHHHHHHHHHHCEEEEEECTTTTSSHHHHHHTTCGGG
T ss_pred ChHhHHHHHHHHHHhcCC---cEEEEEcCCCCHHHHHHHHHhCCHHHHHHhcCCEEEEEEeCCcccchHHHHHHhCCccC
Confidence 34455555443 344 567777542 23677 7777776666665543 345678889999
Q ss_pred CCCCeEEEecCCCCC-CccccC-------CCCHHHHHHHHHh
Q 020623 92 DKVPALVALQPSYNE-HNIFYG-------PFDEEFLEEFIKQ 125 (323)
Q Consensus 92 ~~~p~ivv~k~~~~~-~~~y~g-------~~~~~~L~~fI~~ 125 (323)
...|+++++.+ .++ ...+.| ..+.+.|.+||+.
T Consensus 90 ~~~Pt~~~~d~-~G~~~~~~~g~~~~~~~~~~~~~l~~~l~~ 130 (133)
T 3fk8_A 90 DGIPAVVVVNS-DGKVRYTTKGGELANARKMSDQGIYDFFAK 130 (133)
T ss_dssp GCSSEEEEECT-TSCEEEECCSCTTTTGGGSCHHHHHHHHHH
T ss_pred CccceEEEECC-CCCEEEEecCCcccccccCCHHHHHHHHHH
Confidence 89999999943 122 222334 4578899999975
|
| >2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct} | Back alignment and structure |
|---|
Probab=92.86 E-value=0.011 Score=43.41 Aligned_cols=93 Identities=20% Similarity=0.329 Sum_probs=58.0
Q ss_pred ceecCChHHHHHHH-HhcCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeec-ccchhhHhhcCCCCCCeEE
Q 020623 29 VSILNSDAEVSDFV-ENAGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAK-DFSEDTMVLYDFDKVPALV 98 (323)
Q Consensus 29 v~~i~s~~~l~~fl-~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~-~~~~~~~~~~~~~~~p~iv 98 (323)
+..++ .+++.+.+ +.++ +++|-|... ...+.+++..+.+++.|...+ +...+++.++++...|+++
T Consensus 3 v~~l~-~~~~~~~~~~~~~---~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~ 78 (106)
T 2yj7_A 3 VIEVT-DENFEQEVLKSDK---PVLVDFWAPWCGPCRMIAPIIEELAKEYEGKVKVVKVNVDENPNTAAQYGIRSIPTLL 78 (106)
Confidence 45564 35555433 4444 456666432 235677777776556555442 2245677889988899999
Q ss_pred EecCCCCCCccccCCCCHHHHHHHHHhh
Q 020623 99 ALQPSYNEHNIFYGPFDEEFLEEFIKQN 126 (323)
Q Consensus 99 v~k~~~~~~~~y~g~~~~~~L~~fI~~~ 126 (323)
+++++ .....+.|..+.+.|.+||.+.
T Consensus 79 ~~~~g-~~~~~~~g~~~~~~l~~~l~~~ 105 (106)
T 2yj7_A 79 LFKNG-QVVDRLVGAQPKEALKERIDKH 105 (106)
Confidence 99542 2233466877788899998753
|
| >1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=93.59 E-value=0.29 Score=34.06 Aligned_cols=62 Identities=21% Similarity=0.213 Sum_probs=45.7
Q ss_pred hHHHHHHHhhcCceeEEeec-ccchhhHhhcCCCCCCeEEEecCCCCCCccccCCCCHHHHHHHHHhh
Q 020623 60 SVMSNLALKYKKKAWFAVAK-DFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQN 126 (323)
Q Consensus 60 ~~f~~~A~~~~~~~~F~~~~-~~~~~~~~~~~~~~~p~ivv~k~~~~~~~~y~g~~~~~~L~~fI~~~ 126 (323)
..+.+++.++.+++.|...+ +.+.+++.++++...|++++ + ++. .+.|..+.+.|.+||.+.
T Consensus 22 ~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~--~--G~~-~~~G~~~~~~l~~~l~~~ 84 (85)
T 1fo5_A 22 RVVEEVANEMPDAVEVEYINVMENPQKAMEYGIMAVPTIVI--N--GDV-EFIGAPTKEALVEAIKKR 84 (85)
T ss_dssp HHHHHHHHHCSSSEEEEEEESSSSCCTTTSTTTCCSSEEEE--T--TEE-ECCSSSSSHHHHHHHHHH
T ss_pred HHHHHHHHHcCCceEEEEEECCCCHHHHHHCCCcccCEEEE--C--CEE-eeecCCCHHHHHHHHHHh
Confidence 47788888887677776553 23456788899988999988 3 222 567877889999999864
|
| >2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=92.45 E-value=0.015 Score=45.05 Aligned_cols=92 Identities=10% Similarity=0.083 Sum_probs=59.2
Q ss_pred cCCCcEEEEEEeCCChhHHHHHHHHH---HHHHHhCCC-eEEEEEcCc--chhhHhhhcCCcCCCCCCeEEEEeC-Ccce
Q 020623 144 DDKRKIVLAIVEDETEEKSQKLVTTL---KAAASANRE-LVFCYVGIK--QFADFADTFEANKKSKLPKMVVWDG-NENY 216 (323)
Q Consensus 144 ~~~~~~v~~f~~~~~~e~~~~~~~~l---~~~A~~~~~-l~F~~vd~~--~~~~~~~~~gl~~~~~~P~ivI~~~-~~kY 216 (323)
..++++++.|... .=..-..+...+ .++++.+++ +.|+.+|.+ ....+++.||+ ..+|.++++++ +++.
T Consensus 17 ~~~k~vlv~f~a~-wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~v---~~~Pt~~~~d~~~G~~ 92 (130)
T 2lst_A 17 AHGRMVMVYFHSE-HCPYCQQMNTFVLSDPGVSRLLEARFVVASVSVDTPEGQELARRYRV---PGTPTFVFLVPKAGAW 92 (130)
Confidence 3456666656542 111123444555 677777776 888888884 44567888998 57999999975 3443
Q ss_pred ---eeccCCCCCCCCCCHHHHHHHHHHHHcCc
Q 020623 217 ---LTVIGSESIDEEDQGSQISRFLEGYREGR 245 (323)
Q Consensus 217 ---~~~~~~~~~~~~~t~~~I~~Fi~~~~~Gk 245 (323)
... .+..+.+.|.+||+.++++.
T Consensus 93 ~~~~~~------~G~~~~~~l~~~l~~~~~~~ 118 (130)
T 2lst_A 93 EEVGRL------FGSRPRAEFLKELRQVCVKG 118 (130)
Confidence 111 23456788999999887654
|
| >3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=93.29 E-value=0.93 Score=35.39 Aligned_cols=86 Identities=9% Similarity=0.214 Sum_probs=51.6
Q ss_pred CCcEEEEEEeCCChhH--HHHHHHHHHHHHHhC-C--CeEEEEEcCcch-------------------------hhHhhh
Q 020623 146 KRKIVLAIVEDETEEK--SQKLVTTLKAAASAN-R--ELVFCYVGIKQF-------------------------ADFADT 195 (323)
Q Consensus 146 ~~~~v~~f~~~~~~e~--~~~~~~~l~~~A~~~-~--~l~F~~vd~~~~-------------------------~~~~~~ 195 (323)
++++++.|....- .. -......|.++++++ + ++.|+.++.+.- ..+.+.
T Consensus 33 gk~vll~F~a~~C-~~v~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 111 (150)
T 3fw2_A 33 QKSLLINFWASWN-DSISQKQSNSELREIYKKYKKNKYIGMLGISLDVDKQQWKDAIKRDTLDWEQVCDFGGLNSEVAKQ 111 (150)
T ss_dssp TSEEEEEEECTTC-CCHHHHHHHHHHHHHHHHHTTCSSEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHHHHH
T ss_pred CCEEEEEEEeCCC-CchHHHHHHHHHHHHHHHhccCCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEEcCcccchHHHHH
Confidence 4566555554211 12 344556666666666 3 366655554422 145667
Q ss_pred cCCcCCCCCCeEEEEeCCcceeeccCCCCCCCCCCHHHHHHHHHHHHc
Q 020623 196 FEANKKSKLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEGYRE 243 (323)
Q Consensus 196 ~gl~~~~~~P~ivI~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~~~~~ 243 (323)
||+ ...|.++++|.+++.... ..+.+.+.+.|+.+++
T Consensus 112 ~~v---~~~P~~~lid~~G~i~~~--------~~~~~~l~~~l~~ll~ 148 (150)
T 3fw2_A 112 YSI---YKIPANILLSSDGKILAK--------NLRGEELKKKIENIVE 148 (150)
T ss_dssp TTC---CSSSEEEEECTTSBEEEE--------SCCHHHHHHHHHHHHH
T ss_pred cCC---CccCeEEEECCCCEEEEc--------cCCHHHHHHHHHHHHh
Confidence 787 478999999998754332 1367888888887764
|
| >1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=93.16 E-value=0.41 Score=33.30 Aligned_cols=62 Identities=19% Similarity=0.201 Sum_probs=46.1
Q ss_pred hHHHHHHHhhcCceeEEeec-ccchhhHhhcCCCCCCeEEEecCCCCCCccccCCCCHHHHHHHHHhh
Q 020623 60 SVMSNLALKYKKKAWFAVAK-DFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQN 126 (323)
Q Consensus 60 ~~f~~~A~~~~~~~~F~~~~-~~~~~~~~~~~~~~~p~ivv~k~~~~~~~~y~g~~~~~~L~~fI~~~ 126 (323)
..+.+++.++.+.+.|...+ +.+.+++.++++...|++++ + ++. .+.|..+.+.|.+||.+.
T Consensus 21 ~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~--~--G~~-~~~G~~~~~~l~~~l~~~ 83 (85)
T 1nho_A 21 EVVDEAKKEFGDKIDVEKIDIMVDREKAIEYGLMAVPAIAI--N--GVV-RFVGAPSREELFEAINDE 83 (85)
T ss_dssp HHHHHHHHHHCSSCCEEEECTTTCGGGGGGTCSSCSSEEEE--T--TTE-EEECSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCeEEEEEECCCCHHHHHhCCceeeCEEEE--C--CEE-EEccCCCHHHHHHHHHHH
Confidence 47788888887777776553 23557888999988999988 3 222 567877888999999865
|
| >3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=93.15 E-value=0.68 Score=37.65 Aligned_cols=92 Identities=11% Similarity=0.082 Sum_probs=54.8
Q ss_pred CCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC--e------EEEEEcCcc-h----hhHhhhcCCc-------------
Q 020623 146 KRKIVLAIVEDETEEKSQKLVTTLKAAASANRE--L------VFCYVGIKQ-F----ADFADTFEAN------------- 199 (323)
Q Consensus 146 ~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~--l------~F~~vd~~~-~----~~~~~~~gl~------------- 199 (323)
++++++.|.... =..-......|+++++++++ + .|+.++.+. . .++++.++++
T Consensus 59 gk~vlv~F~a~~-C~~C~~~~~~l~~l~~~~~~~~~~~~~~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 137 (183)
T 3lwa_A 59 NQVVILNAWGQW-CAPCRSESDDLQIIHEELQAAGNGDTPGGTVLGINVRDYSRDIAQDFVTDNGLDYPSIYDPPFMTAA 137 (183)
T ss_dssp TSEEEEEEECTT-CHHHHHHHHHHHHHHHHHHHCC---CCSEEEEEEECSCCCHHHHHHHHHHTTCCSCEEECTTCGGGG
T ss_pred CCEEEEEEECCc-CHhHHHHHHHHHHHHHHHHhcCCCccCCcEEEEEECCCCCHHHHHHHHHHcCCCccEEECCcchHHH
Confidence 467777666521 12234555667777777653 6 888887765 2 2333333320
Q ss_pred -----CCCCCCeEEEEeCCcceeeccCCCCCCCCCCHHHHHHHHHHHHc
Q 020623 200 -----KKSKLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEGYRE 243 (323)
Q Consensus 200 -----~~~~~P~ivI~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~~~~~ 243 (323)
.....|.+++++.+++....- .+..+.+.|.++|+.+++
T Consensus 138 ~~~~~~v~~~P~~~lid~~G~i~~~~-----~g~~~~~~l~~~l~~ll~ 181 (183)
T 3lwa_A 138 SLGGVPASVIPTTIVLDKQHRPAAVF-----LREVTSKDVLDVALPLVD 181 (183)
T ss_dssp GTTTCCTTCCSEEEEECTTSCEEEEE-----CSCCCHHHHHHHHHHHHH
T ss_pred HhccCCCCCCCeEEEECCCCcEEEEE-----cCCCCHHHHHHHHHHHHh
Confidence 125689999999876432210 234688999999998875
|
| >1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=93.10 E-value=1.1 Score=36.27 Aligned_cols=94 Identities=10% Similarity=0.091 Sum_probs=57.4
Q ss_pred CCcEEEEEEeCCChhHHHHHHHHHHHHHHhCC--CeEEEEEcCcch-----hhHhhhcCCcC------------------
Q 020623 146 KRKIVLAIVEDETEEKSQKLVTTLKAAASANR--ELVFCYVGIKQF-----ADFADTFEANK------------------ 200 (323)
Q Consensus 146 ~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~--~l~F~~vd~~~~-----~~~~~~~gl~~------------------ 200 (323)
++++++.|....- ..-......|++++++++ ++.++.++.+.. ..+++.+++ .
T Consensus 60 gk~vll~F~a~~C-~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~ 137 (186)
T 1jfu_A 60 GKTLLVNLWATWC-VPCRKEMPALDELQGKLSGPNFEVVAINIDTRDPEKPKTFLKEANL-TRLGYFNDQKAKVFQDLKA 137 (186)
T ss_dssp TSEEEEEEECTTC-HHHHHHHHHHHHHHHHHCBTTEEEEEEECCCSCTTHHHHHHHHTTC-CTTCCEECTTCHHHHHHHT
T ss_pred CCEEEEEEEeCCC-HhHHHHHHHHHHHHHHhccCCcEEEEEECCCCCHHHHHHHHHHcCC-CCCceEECCcchHHHHhcc
Confidence 4677776765211 233456677888888876 366666665421 345565555 2
Q ss_pred ---CCCCCeEEEEeCCcc--eeeccCCCCCCCCCCHHHHHHHHHHHHcCcc
Q 020623 201 ---KSKLPKMVVWDGNEN--YLTVIGSESIDEEDQGSQISRFLEGYREGRT 246 (323)
Q Consensus 201 ---~~~~P~ivI~~~~~k--Y~~~~~~~~~~~~~t~~~I~~Fi~~~~~Gkl 246 (323)
....|.++++|.+++ +.+. |. ...+.+.|.++|+..++++.
T Consensus 138 ~~~~~~~P~~~lid~~G~i~~~~~-g~----~~~~~~~l~~~l~~ll~~~a 183 (186)
T 1jfu_A 138 IGRALGMPTSVLVDPQGCEIATIA-GP----AEWASEDALKLIRAATGKAA 183 (186)
T ss_dssp TTCCSSSSEEEEECTTSBEEEEEE-SC----CCTTSHHHHHHHHHHHC---
T ss_pred ccccCCCCEEEEECCCCCEEEEEe-cC----CccCHHHHHHHHHHHhcccc
Confidence 026899999998764 3332 31 22457899999999988754
|
| >3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=92.97 E-value=1.4 Score=34.76 Aligned_cols=67 Identities=10% Similarity=0.181 Sum_probs=48.1
Q ss_pred CCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCC--CeEEEEEcCcc-------------------hhhHhhhcCCcCCCC
Q 020623 145 DKRKIVLAIVEDETEEKSQKLVTTLKAAASANR--ELVFCYVGIKQ-------------------FADFADTFEANKKSK 203 (323)
Q Consensus 145 ~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~--~l~F~~vd~~~-------------------~~~~~~~~gl~~~~~ 203 (323)
.++++++.|... .-..-......|.+++++++ ++.|+.++.+. ...+.+.||+ ..
T Consensus 40 ~gk~vll~F~~~-~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v---~~ 115 (158)
T 3hdc_A 40 RGKIVLVNFWAS-WCPYCRDEMPSMDRLVKSFPKGDLVVLAVNVEKRFPEKYRRAPVSFNFLSDATGQVQQRYGA---NR 115 (158)
T ss_dssp TTSEEEEEEECT-TCHHHHHHHHHHHHHHHHSSTTSEEEEEEECSSSCCGGGGGCCCSCEEEECTTSHHHHHTTC---CS
T ss_pred CCCEEEEEEECC-cCHHHHHHHHHHHHHHHHcccCCeEEEEEeCCHHHHHHHHHcCCCceEEECchHHHHHHhCC---CC
Confidence 357777777753 12234567788999999997 38888888764 2356678888 57
Q ss_pred CCeEEEEeCCcc
Q 020623 204 LPKMVVWDGNEN 215 (323)
Q Consensus 204 ~P~ivI~~~~~k 215 (323)
.|.++++|.+++
T Consensus 116 ~P~~~lid~~G~ 127 (158)
T 3hdc_A 116 LPDTFIVDRKGI 127 (158)
T ss_dssp SSEEEEECTTSB
T ss_pred cceEEEEcCCCC
Confidence 899999998763
|
| >3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A* | Back alignment and structure |
|---|
Probab=92.75 E-value=0.43 Score=45.86 Aligned_cols=110 Identities=9% Similarity=0.123 Sum_probs=76.8
Q ss_pred CeeecChhhHHHhhcCC--CcEEEEEEeCCChhHHHHHHHHHHHHHHhCC---C------eEEEEEcCcchhhHhhhcCC
Q 020623 130 LSVPINQDTLNLLKDDK--RKIVLAIVEDETEEKSQKLVTTLKAAASANR---E------LVFCYVGIKQFADFADTFEA 198 (323)
Q Consensus 130 lv~~~t~~~~~~~~~~~--~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~---~------l~F~~vd~~~~~~~~~~~gl 198 (323)
.+..++.+++..+.... +++++.|... -=..-+.+...+.++|+.++ + +.|+.+|.+..+.+++.|++
T Consensus 24 ~V~~Lt~~~F~~~l~~~~~k~VlV~FyA~-WC~pCk~~~P~l~~la~~~~~~~g~~~~~~v~f~~VD~d~~~~la~~y~V 102 (470)
T 3qcp_A 24 SVVDLSGDDFSRVHRVAPLCPWIVLFYND-GCGACRRYASTFSKFAGGLKVEHGKDALQIATAAAVNCASEVDLCRKYDI 102 (470)
T ss_dssp TEEECSCSCGGGTCTTGGGSCEEEEEECT-TCHHHHHHHHHHHHHHHTSCCSSCSSGGGGCEEEEEETTTCHHHHHHTTC
T ss_pred CcEECCHHHHHHHHHhCCCCeEEEEEECC-CCHHHHHHHHHHHHHHHHHhhhcccccCceEEEEEEECCCCHHHHHHcCC
Confidence 57888988998776543 6777777752 11334677789999999987 2 99999999988889999999
Q ss_pred cCCCCCCeEEEEeCCc-----ceeeccCCCC------CCCCCCHHHHHHHHHHHHcCcc
Q 020623 199 NKKSKLPKMVVWDGNE-----NYLTVIGSES------IDEEDQGSQISRFLEGYREGRT 246 (323)
Q Consensus 199 ~~~~~~P~ivI~~~~~-----kY~~~~~~~~------~~~~~t~~~I~~Fi~~~~~Gkl 246 (323)
..+|.+++++..+ +|. |..+ +...++.+.+.+.++.+++.++
T Consensus 103 ---~~~PTlilf~~gg~~~~~~y~---G~r~~e~L~fI~k~l~~~eLe~~~e~Link~~ 155 (470)
T 3qcp_A 103 ---NFVPRLFFFYPRDSCRSNEEC---GTSSLEHVAFENSHLEVDELESEVRRLVNKHM 155 (470)
T ss_dssp ---CSSCEEEEEEESSCCCTTSCC---CCCCEEEEECSCTTCCHHHHHHHHHHHHHHHC
T ss_pred ---CccCeEEEEECCCceEEEEee---CCCCHHHHHHHHHhcCHHHHHHHHHHHhhhcc
Confidence 5799999986422 221 2111 1223677777777777765554
|
| >2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A | Back alignment and structure |
|---|
Probab=92.67 E-value=0.62 Score=36.83 Aligned_cols=105 Identities=6% Similarity=0.014 Sum_probs=61.3
Q ss_pred CeeecChhhHHHhhcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCC--CeEEEEEcCc--------------------
Q 020623 130 LSVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANR--ELVFCYVGIK-------------------- 187 (323)
Q Consensus 130 lv~~~t~~~~~~~~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~--~l~F~~vd~~-------------------- 187 (323)
.+...+.+.+..-...++++++.|... .=..-......|.+++++++ ++.|+.+..+
T Consensus 22 ~l~~~~g~~~~~~~~~gk~vlv~F~a~-~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~ 100 (164)
T 2h30_A 22 TMKTADNRPASVYLKKDKPTLIKFWAS-WCPLCLSELGQAEKWAQDAKFSSANLITVASPGFLHEKKDGEFQKWYAGLNY 100 (164)
T ss_dssp TCEETTSSBGGGGCCTTSCEEEEECCT-TCHHHHHHHHHHHHHHTCGGGTTSEEEEEECTTSTTCCCTTHHHHHHTTSCC
T ss_pred ccCCCCCCEeeHHHhCCCEEEEEEECC-CCHHHHHHHHHHHHHHHHcccCCcEEEEEEcCCCccccCHHHHHHHHHhCCC
Confidence 344444444443323456777666542 11223556677888888754 3555555421
Q ss_pred --------chhhHhhhcCCcCCCCCCeEEEEeCCcceeeccCCCCCCCCCCHHHHHHHHHHHHc
Q 020623 188 --------QFADFADTFEANKKSKLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEGYRE 243 (323)
Q Consensus 188 --------~~~~~~~~~gl~~~~~~P~ivI~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~~~~~ 243 (323)
....+++.||+ ...|.++++|.+++....- .+..+.+.|.++|+..++
T Consensus 101 ~~~~~~~d~~~~~~~~~~v---~~~P~~~lid~~G~i~~~~-----~g~~~~~~l~~~i~~~~~ 156 (164)
T 2h30_A 101 PKLPVVTDNGGTIAQNLNI---SVYPSWALIGKDGDVQRIV-----KGSINEAQALALIRNPNA 156 (164)
T ss_dssp TTSCEEECTTCHHHHHTTC---CSSSEEEEECTTSCEEEEE-----ESCCCHHHHHHHHHCTTC
T ss_pred CcceEEEcCchHHHHHcCC---CccceEEEECCCCcEEEEE-----cCCCCHHHHHHHHHHHHH
Confidence 11234556777 4689999999876432210 134678999999998875
|
| >3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=92.46 E-value=0.35 Score=37.46 Aligned_cols=67 Identities=18% Similarity=0.183 Sum_probs=39.0
Q ss_pred CCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC--eEEEEEcCcchhh-------------------------HhhhcCC
Q 020623 146 KRKIVLAIVEDETEEKSQKLVTTLKAAASANRE--LVFCYVGIKQFAD-------------------------FADTFEA 198 (323)
Q Consensus 146 ~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~--l~F~~vd~~~~~~-------------------------~~~~~gl 198 (323)
++++++.|.... -..-......|.++++++++ +.|+.++.+.... +...||+
T Consensus 31 gk~vll~f~~~~-C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i 109 (148)
T 3hcz_A 31 AKYTILFFWDSQ-CGHCQQETPKLYDWWLKNRAKGIQVYAANIERKDEEWLKFIRSKKIGGWLNVRDSKNHTDFKITYDI 109 (148)
T ss_dssp CSEEEEEEECGG-GCTTCSHHHHHHHHHHHHGGGTEEEEEEECCSSSHHHHHHHHHHTCTTSEEEECTTCCCCHHHHHCC
T ss_pred CCEEEEEEECCC-CccHHHHHHHHHHHHHHhccCCEEEEEEEecCCHHHHHHHHHHcCCCCceEEeccccchhHHHhcCc
Confidence 466666565421 01112344556666666653 7777766653222 5566777
Q ss_pred cCCCCCCeEEEEeCCcce
Q 020623 199 NKKSKLPKMVVWDGNENY 216 (323)
Q Consensus 199 ~~~~~~P~ivI~~~~~kY 216 (323)
...|.++++|.+++-
T Consensus 110 ---~~~P~~~lid~~G~i 124 (148)
T 3hcz_A 110 ---YATPVLYVLDKNKVI 124 (148)
T ss_dssp ---CSSCEEEEECTTCBE
T ss_pred ---CCCCEEEEECCCCcE
Confidence 468999999987743
|
| >1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=92.41 E-value=0.76 Score=35.89 Aligned_cols=88 Identities=7% Similarity=-0.002 Sum_probs=51.5
Q ss_pred CCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCCeEEEEEcCcc-----------------------hhhHhhhcCCcCCC
Q 020623 146 KRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQ-----------------------FADFADTFEANKKS 202 (323)
Q Consensus 146 ~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~l~F~~vd~~~-----------------------~~~~~~~~gl~~~~ 202 (323)
++++++.|.... =..-......|++++++ .++.|+.++.+. ...+...||+ .
T Consensus 42 gk~~ll~f~~~~-C~~C~~~~~~l~~l~~~-~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v---~ 116 (156)
T 1kng_A 42 GKVSLVNVWASW-CVPCHDEAPLLTELGKD-KRFQLVGINYKDAADNARRFLGRYGNPFGRVGVDANGRASIEWGV---Y 116 (156)
T ss_dssp TSCEEEEEECTT-CHHHHHHHHHHHHHTTC-TTSEEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTSHHHHHTTC---C
T ss_pred CCEEEEEEEccc-CHhHHHHHHHHHHHHhc-CCeEEEEEECCCCHHHHHHHHHHcCCCCceeeeCchhHHHHhcCc---C
Confidence 466666665421 12234455666666655 336666655421 1234566777 4
Q ss_pred CCCeEEEEeCCcceeeccCCCCCCCCCCHHHHHHHHHHHHc
Q 020623 203 KLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEGYRE 243 (323)
Q Consensus 203 ~~P~ivI~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~~~~~ 243 (323)
..|.+++++.+++....- .+..+.+.+.++++.+++
T Consensus 117 ~~P~~~~id~~G~i~~~~-----~g~~~~~~l~~~l~~~l~ 152 (156)
T 1kng_A 117 GVPETFVVGREGTIVYKL-----VGPITPDNLRSVLLPQME 152 (156)
T ss_dssp SSCEEEEECTTSBEEEEE-----ESCCCHHHHHHTHHHHHH
T ss_pred ccCeEEEEcCCCCEEEEE-----eCCCCHHHHHHHHHHHHH
Confidence 689989998876432210 134577889998888764
|
| >2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A | Back alignment and structure |
|---|
Probab=92.36 E-value=0.73 Score=37.63 Aligned_cols=98 Identities=13% Similarity=0.183 Sum_probs=56.6
Q ss_pred CCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC-eEEEEEcCcc-----------------------------hhhHhhh
Q 020623 146 KRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQ-----------------------------FADFADT 195 (323)
Q Consensus 146 ~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~-l~F~~vd~~~-----------------------------~~~~~~~ 195 (323)
++++++.|.... =..-......|+++++++++ +.|+.++.+. ...+.+.
T Consensus 33 gk~vlv~F~a~~-C~~C~~~~~~l~~l~~~~~~~~~~v~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 111 (188)
T 2cvb_A 33 EPLLAVVFMCNH-CPYVKGSIGELVALAERYRGKVAFVGINANDYEKYPEDAPEKMAAFAEEHGIFFPYLLDETQEVAKA 111 (188)
T ss_dssp SSEEEEEEECSS-CHHHHTTHHHHHHHHHHTTTTEEEEEEECCCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSSHHHHH
T ss_pred CCEEEEEEECCC-CccHHHHHHHHHHHHHHhhcCeEEEEEEcCccccccccCHHHHHHHHHHhCCCceEEECCcchHHHH
Confidence 355555555421 11223344566667777766 6666665421 1234556
Q ss_pred cCCcCCCCCCeEEEEeCCcceeeccCCCC----CCCCCCHHHHHHHHHHHHcCcccc
Q 020623 196 FEANKKSKLPKMVVWDGNENYLTVIGSES----IDEEDQGSQISRFLEGYREGRTEQ 248 (323)
Q Consensus 196 ~gl~~~~~~P~ivI~~~~~kY~~~~~~~~----~~~~~t~~~I~~Fi~~~~~Gkl~~ 248 (323)
||+ ...|.++++|.+++.... |..+ ..+..+.+.|.+.|+.+++|+-.+
T Consensus 112 ~~v---~~~P~~~lid~~G~i~~~-g~~~~~~~~~g~~~~~~l~~~i~~ll~~~~~~ 164 (188)
T 2cvb_A 112 YRA---LRTPEVFLFDERRLLRYH-GRVNDNPKDPSKVQSHDLEAAIEALLRGEEPP 164 (188)
T ss_dssp TTC---CEESEEEEECTTCBEEEE-ECSSSCTTCGGGCCCCHHHHHHHHHHTTCCCC
T ss_pred cCC---CCCCeEEEECCCCcEEEE-EecCCccccccccCHHHHHHHHHHHHcCCCCC
Confidence 777 467999999987743332 2110 012246789999999999886543
|
| >1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A | Back alignment and structure |
|---|
Probab=92.30 E-value=0.22 Score=40.44 Aligned_cols=99 Identities=10% Similarity=0.130 Sum_probs=57.8
Q ss_pred cCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC-eEEEEEcCcchhh-HhhhcCCcCCCCCCeEEEEeCCcceee-cc
Q 020623 144 DDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFAD-FADTFEANKKSKLPKMVVWDGNENYLT-VI 220 (323)
Q Consensus 144 ~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~-l~F~~vd~~~~~~-~~~~~gl~~~~~~P~ivI~~~~~kY~~-~~ 220 (323)
..++|+++.|... -=..-..+...|.++++.+.. +.|+.++.+..+. ....+++ ....+|.+++++.+++-.. ..
T Consensus 44 ~~~k~vlv~F~a~-WC~~C~~~~p~l~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~-~~~~~Pt~~~~d~~G~~~~~~~ 121 (164)
T 1sen_A 44 ASGLPLMVIIHKS-WCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPKDEDFSP-DGGYIPRILFLDPSGKVHPEII 121 (164)
T ss_dssp HHTCCEEEEEECT-TCHHHHHHHHHHHTCHHHHHHHTTSEEEEEEGGGSCSCGGGCT-TCSCSSEEEEECTTSCBCTTCC
T ss_pred hcCCeEEEEEECC-CCHHHHHHHHHHHHHHHHhhcCCeEEEEEecCCchHHHHHhcc-cCCcCCeEEEECCCCCEEEEEe
Confidence 3467887777652 112234455566666555443 6667777765544 5667777 5566999999987653211 11
Q ss_pred CCCCCC----CCCCHHHHHHHHHHHHcC
Q 020623 221 GSESID----EEDQGSQISRFLEGYREG 244 (323)
Q Consensus 221 ~~~~~~----~~~t~~~I~~Fi~~~~~G 244 (323)
|..... ...+.+.|.++|+.+++.
T Consensus 122 G~~~~~~~~~~~~~~~~l~~~l~~~l~~ 149 (164)
T 1sen_A 122 NENGNPSYKYFYVSAEQVVQGMKEAQER 149 (164)
T ss_dssp CTTSCTTSTTCCCSHHHHHHHHHHHHHH
T ss_pred CCCCccchhcccCCHHHHHHHHHHHHHh
Confidence 211100 025788999999888754
|
| >2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=91.98 E-value=0.86 Score=37.35 Aligned_cols=55 Identities=20% Similarity=0.282 Sum_probs=34.8
Q ss_pred hHhhhcCCcCCCCCCeEEEEeCCcceeec-cCCCC---CCCCCCHHHHHHHHHHHHcCcccc
Q 020623 191 DFADTFEANKKSKLPKMVVWDGNENYLTV-IGSES---IDEEDQGSQISRFLEGYREGRTEQ 248 (323)
Q Consensus 191 ~~~~~~gl~~~~~~P~ivI~~~~~kY~~~-~~~~~---~~~~~t~~~I~~Fi~~~~~Gkl~~ 248 (323)
.+.+.||+ ...|.++++|.+++.... ..... ..+..+.+.|.+.|+.+++++-.+
T Consensus 121 ~~~~~~~v---~~~P~~~lid~~G~i~~~~~~~~~~~~~~g~~~~~~l~~~i~~ll~~~~~~ 179 (196)
T 2ywi_A 121 EVAKAYDA---ACTPDFYIFDRDLKCVYRGQLDDSRPNNGIPVTGESIRAALDALLEGRPVP 179 (196)
T ss_dssp HHHHHHTC---CEESEEEEEETTCBEEEEECSSSCCTTTCCCCCCHHHHHHHHHHHHTCCCC
T ss_pred HHHHHhCC---CCCCeEEEEcCCCeEEEccccCcccccccCccCHHHHHHHHHHHHcCCCCC
Confidence 34566777 467999999987642221 00000 123467899999999999875443
|
| >1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A | Back alignment and structure |
|---|
Probab=91.91 E-value=1.3 Score=36.16 Aligned_cols=80 Identities=15% Similarity=0.072 Sum_probs=52.0
Q ss_pred ecChhhHHHhhcC-CCcEEEEEEeCCCh-hHHHHHHHHHHHHHHhCCCeEEEEEcCcchhhHhhhcCCcCCCCCCeEEEE
Q 020623 133 PINQDTLNLLKDD-KRKIVLAIVEDETE-EKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVW 210 (323)
Q Consensus 133 ~~t~~~~~~~~~~-~~~~v~~f~~~~~~-e~~~~~~~~l~~~A~~~~~l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI~ 210 (323)
.++.+....+-.. ++++++.|.. +. ..-......|.+++..++++.|+.+|.++.+..+..|+-......|.++++
T Consensus 40 ~~~~~~~~~l~~~~~k~vvv~F~A--~WC~pC~~~~P~l~~l~~~~~~v~~~~v~~d~~~~~~~~~~~~~v~~iPt~i~~ 117 (167)
T 1z6n_A 40 GLPSALTERLQRIERRYRLLVAGE--MWCPDCQINLAALDFAQRLQPNIELAIISKGRAEDDLRQRLALERIAIPLVLVL 117 (167)
T ss_dssp CCCHHHHHHHHTCCSCEEEEEECC--TTCHHHHHHHHHHHHHHHHCTTEEEEEECHHHHHHHTTTTTTCSSCCSSEEEEE
T ss_pred CCCHHHHHHHHHhCCCEEEEEEEC--CCChhHHHHHHHHHHHHHHCCCcEEEEEECCCCHHHHHHHHHcCCCCcCeEEEE
Confidence 3555555555432 3455555543 21 234566788899999988899999998876666666651112679999999
Q ss_pred eCCc
Q 020623 211 DGNE 214 (323)
Q Consensus 211 ~~~~ 214 (323)
+.++
T Consensus 118 ~~~G 121 (167)
T 1z6n_A 118 DEEF 121 (167)
T ss_dssp CTTC
T ss_pred CCCC
Confidence 9764
|
| >1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=91.24 E-value=0.48 Score=32.36 Aligned_cols=57 Identities=14% Similarity=0.165 Sum_probs=42.4
Q ss_pred hHHHHHHHhhcCceeEEeecccchhhHhhcCCCCCCeEEEecCCCCCCccccCCC-CHHHHHHHH
Q 020623 60 SVMSNLALKYKKKAWFAVAKDFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPF-DEEFLEEFI 123 (323)
Q Consensus 60 ~~f~~~A~~~~~~~~F~~~~~~~~~~~~~~~~~~~p~ivv~k~~~~~~~~y~g~~-~~~~L~~fI 123 (323)
..+.+++..+..++.+...+ +.+++.++++...|++++ + +..++.|.. +.++|.+||
T Consensus 19 ~~l~~~~~~~~~~~~~~~v~--~~~~~~~~~v~~~Pt~~~--~---G~~~~~G~~~~~~~l~~~l 76 (77)
T 1ilo_A 19 KNAREAVKELGIDAEFEKIK--EMDQILEAGLTALPGLAV--D---GELKIMGRVASKEEIKKIL 76 (77)
T ss_dssp HHHHHHHHHTTCCEEEEEEC--SHHHHHHHTCSSSSCEEE--T---TEEEECSSCCCHHHHHHHC
T ss_pred HHHHHHHHHcCCceEEEEec--CHHHHHHCCCCcCCEEEE--C---CEEEEcCCCCCHHHHHHHh
Confidence 46778888887667666554 677888999988999988 2 333344876 889999886
|
| >3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343} | Back alignment and structure |
|---|
Probab=91.15 E-value=0.93 Score=36.47 Aligned_cols=43 Identities=28% Similarity=0.199 Sum_probs=28.4
Q ss_pred hhhcCCcCCCCCCeEEEEeCCcceeeccCCCCCCCCCC-HHHHHHHHHHHHc
Q 020623 193 ADTFEANKKSKLPKMVVWDGNENYLTVIGSESIDEEDQ-GSQISRFLEGYRE 243 (323)
Q Consensus 193 ~~~~gl~~~~~~P~ivI~~~~~kY~~~~~~~~~~~~~t-~~~I~~Fi~~~~~ 243 (323)
...||+ ...|.++++|.+++-.... .+..+ .+.+.+|++..++
T Consensus 123 ~~~~~v---~~~Pt~~lid~~G~~~~~~-----~G~~~~~~~l~~~l~~~l~ 166 (172)
T 3f9u_A 123 RVKFGA---NAQPFYVLIDNEGNPLNKS-----YAYDEDISKYINFLQTGLE 166 (172)
T ss_dssp HHHHSC---CCSSEEEEECTTSCBSSCC-----BCSCCCHHHHHHHHHHHHH
T ss_pred HHHcCC---CCcceEEEECCCCCEEeec-----cCCCCCHHHHHHHHHHHHH
Confidence 567888 5799999999876322110 12345 7888888877654
|
| >2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A | Back alignment and structure |
|---|
Probab=91.08 E-value=1.2 Score=35.44 Aligned_cols=45 Identities=11% Similarity=-0.014 Sum_probs=29.3
Q ss_pred hHhhhcCCcCCCCCCeEEEEeCCcceeeccCCCCCCCCCCHHHHHHHHHHHHc
Q 020623 191 DFADTFEANKKSKLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEGYRE 243 (323)
Q Consensus 191 ~~~~~~gl~~~~~~P~ivI~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~~~~~ 243 (323)
.+...||+ ...|..++++.+++....- .+..+.+.+.++|+..++
T Consensus 116 ~~~~~~~v---~~~P~~~lid~~G~i~~~~-----~g~~~~~~l~~~l~~~l~ 160 (168)
T 2b1k_A 116 MLGLDLGV---YGAPETFLIDGNGIIRYRH-----AGDLNPRVWEEEIKPLWE 160 (168)
T ss_dssp HHHHHHTC---CSSSEEEEECTTSBEEEEE-----ESCCCHHHHHHTTHHHHH
T ss_pred HHHHHcCc---cccCEEEEECCCCeEEEEE-----eCCCCHHHHHHHHHHHHH
Confidence 45566787 4689888899876432210 123677888888877764
|
| >3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=90.86 E-value=1.5 Score=37.04 Aligned_cols=54 Identities=13% Similarity=0.285 Sum_probs=36.6
Q ss_pred hHhhhcCCcCCCCCCeEEEEeCCcceeeccCCC-----CCCCCCCHHHHHHHHHHHHcCcccc
Q 020623 191 DFADTFEANKKSKLPKMVVWDGNENYLTVIGSE-----SIDEEDQGSQISRFLEGYREGRTEQ 248 (323)
Q Consensus 191 ~~~~~~gl~~~~~~P~ivI~~~~~kY~~~~~~~-----~~~~~~t~~~I~~Fi~~~~~Gkl~~ 248 (323)
.+.+.||+ ...|.++|+|.+++..+. +.. ......+.+.|.+.|+.+++|+-.+
T Consensus 134 ~~~~~~~v---~~~P~~~liD~~G~i~~~-g~~d~~~~~~~~~~~~~~l~~~i~~ll~~~~~~ 192 (218)
T 3u5r_E 134 SVAKAYGA---ACTPDFFLYDRERRLVYH-GQFDDARPGNGKDVTGADLRAAVDAVLKGKDVG 192 (218)
T ss_dssp HHHHHHTC---CEESEEEEECTTCBEEEE-ECSSSCCTTSCCCCCCHHHHHHHHHHHTTCCCC
T ss_pred HHHHHcCC---CCCCeEEEECCCCcEEEe-ccccccccccccccCHHHHHHHHHHHHcCCCCC
Confidence 45667787 467999999987743321 110 0123467899999999999997654
|
| >3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=90.69 E-value=1 Score=34.68 Aligned_cols=37 Identities=14% Similarity=0.312 Sum_probs=26.6
Q ss_pred hcCCcCCCCCCeEEEEeCCcceeeccCCCCCCCCCCHHHHHHHHHHHH
Q 020623 195 TFEANKKSKLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEGYR 242 (323)
Q Consensus 195 ~~gl~~~~~~P~ivI~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~~~~ 242 (323)
.||+ ...|.++++|.+++-... ..+.+.|.++++...
T Consensus 104 ~~~v---~~~P~~~lid~~G~i~~~--------~~~~~~l~~~l~~~~ 140 (142)
T 3ewl_A 104 LYDI---RATPTIYLLDGRKRVILK--------DTSMEQLIDYLATQA 140 (142)
T ss_dssp CSCC---CSSSEEEEECTTCBEEEC--------SCCHHHHHHHHHC--
T ss_pred HcCC---CCCCeEEEECCCCCEEec--------CCCHHHHHHHHHHHc
Confidence 5677 578999999988754431 267899999998764
|
| >1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=90.50 E-value=1.3 Score=30.03 Aligned_cols=60 Identities=18% Similarity=0.149 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHhCCC-eEEEEEcCcchhhHhhhcCCcCCCCCCeEEEEeCCcceeeccCCCCCCCCC-CHHHHHHHH
Q 020623 163 QKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYLTVIGSESIDEED-QGSQISRFL 238 (323)
Q Consensus 163 ~~~~~~l~~~A~~~~~-l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI~~~~~kY~~~~~~~~~~~~~-t~~~I~~Fi 238 (323)
+.+...+.++++++.+ +.++.+| ....++.||+ ...|.+++ +++.... | .. +.+.|.+|+
T Consensus 15 ~~~~~~l~~~~~~~~~~~~~~~v~---~~~~~~~~~v---~~~Pt~~~---~G~~~~~-G------~~~~~~~l~~~l 76 (77)
T 1ilo_A 15 QMLEKNAREAVKELGIDAEFEKIK---EMDQILEAGL---TALPGLAV---DGELKIM-G------RVASKEEIKKIL 76 (77)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEEC---SHHHHHHHTC---SSSSCEEE---TTEEEEC-S------SCCCHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCceEEEEec---CHHHHHHCCC---CcCCEEEE---CCEEEEc-C------CCCCHHHHHHHh
Confidence 4566778889999886 9999998 3466788899 57899988 4443221 2 23 677887765
|
| >3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A | Back alignment and structure |
|---|
Probab=89.67 E-value=2.4 Score=34.27 Aligned_cols=43 Identities=9% Similarity=-0.052 Sum_probs=29.6
Q ss_pred hHhhhcCCcCCCCCCeEEEEeCCcc--eeeccCCCCCCCCCCHHHHHHHHHHHHc
Q 020623 191 DFADTFEANKKSKLPKMVVWDGNEN--YLTVIGSESIDEEDQGSQISRFLEGYRE 243 (323)
Q Consensus 191 ~~~~~~gl~~~~~~P~ivI~~~~~k--Y~~~~~~~~~~~~~t~~~I~~Fi~~~~~ 243 (323)
.+...||+ ...|..+++|.+++ +... +..+.+.+.++|+.+++
T Consensus 123 ~~~~~~~v---~~~P~~~lid~~G~i~~~~~-------g~~~~~~l~~~l~~~l~ 167 (176)
T 3kh7_A 123 TLGLDLGV---YGAPETYLIDKQGIIRHKIV-------GVVDQKVWREQLAPLYQ 167 (176)
T ss_dssp HHHHHHTC---CSSCEEEEECTTCBEEEEEE-------SCCCHHHHHHHTHHHHH
T ss_pred hHHHHcCC---CCCCeEEEECCCCeEEEEEc-------CCCCHHHHHHHHHHHHH
Confidence 34556677 46899999998764 3332 23677888888888775
|
| >3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A* | Back alignment and structure |
|---|
Probab=89.62 E-value=0.12 Score=49.81 Aligned_cols=85 Identities=26% Similarity=0.177 Sum_probs=56.8
Q ss_pred CceecCChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcC--------ceeEEeec-ccchhhHhhcC
Q 020623 28 DVSILNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKK--------KAWFAVAK-DFSEDTMVLYD 90 (323)
Q Consensus 28 ~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~--------~~~F~~~~-~~~~~~~~~~~ 90 (323)
.|..++ .+++++++..+... +++|-|... .+.|.++|..+.+ .+.|+.++ +...+++.+|+
T Consensus 24 ~V~~Lt-~~~F~~~l~~~~~k-~VlV~FyA~WC~pCk~~~P~l~~la~~~~~~~g~~~~~~v~f~~VD~d~~~~la~~y~ 101 (470)
T 3qcp_A 24 SVVDLS-GDDFSRVHRVAPLC-PWIVLFYNDGCGACRRYASTFSKFAGGLKVEHGKDALQIATAAAVNCASEVDLCRKYD 101 (470)
T ss_dssp TEEECS-CSCGGGTCTTGGGS-CEEEEEECTTCHHHHHHHHHHHHHHHTSCCSSCSSGGGGCEEEEEETTTCHHHHHHTT
T ss_pred CcEECC-HHHHHHHHHhCCCC-eEEEEEECCCCHHHHHHHHHHHHHHHHHhhhcccccCceEEEEEEECCCCHHHHHHcC
Confidence 467774 47887777654211 577877653 2578899998862 46676653 23567889999
Q ss_pred CCCCCeEEEecCCCC-CCccccCCC
Q 020623 91 FDKVPALVALQPSYN-EHNIFYGPF 114 (323)
Q Consensus 91 ~~~~p~ivv~k~~~~-~~~~y~g~~ 114 (323)
+...|++++|+++.. ....|.|..
T Consensus 102 V~~~PTlilf~~gg~~~~~~y~G~r 126 (470)
T 3qcp_A 102 INFVPRLFFFYPRDSCRSNEECGTS 126 (470)
T ss_dssp CCSSCEEEEEEESSCCCTTSCCCCC
T ss_pred CCccCeEEEEECCCceEEEEeeCCC
Confidence 999999999976432 244566653
|
| >3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=88.46 E-value=2.7 Score=32.24 Aligned_cols=36 Identities=14% Similarity=0.394 Sum_probs=24.5
Q ss_pred hhhcCCcCCCCCCeEEEEeCCcceeeccCCCCCCCCCCHHHHHHHHH
Q 020623 193 ADTFEANKKSKLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLE 239 (323)
Q Consensus 193 ~~~~gl~~~~~~P~ivI~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~ 239 (323)
...|++ ...|.++++|.+++-... ..+.+.|.+|++
T Consensus 106 ~~~~~v---~~~P~~~lid~~G~i~~~--------~~~~~~l~~~l~ 141 (142)
T 3eur_A 106 KNLYDL---RAIPTLYLLDKNKTVLLK--------DATLQKVEQYLA 141 (142)
T ss_dssp TTCSCC---TTCSEEEEECTTCBEEEE--------EECHHHHHHHHH
T ss_pred hhhcCC---CcCCeEEEECCCCcEEec--------CCCHHHHHHHHh
Confidence 445566 468999999988753331 135688888875
|
| >4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis} | Back alignment and structure |
|---|
Probab=88.37 E-value=3.2 Score=31.86 Aligned_cols=83 Identities=10% Similarity=0.160 Sum_probs=49.2
Q ss_pred CCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC--eEEEEEcCcch--------------------------hhHhhhcC
Q 020623 146 KRKIVLAIVEDETEEKSQKLVTTLKAAASANRE--LVFCYVGIKQF--------------------------ADFADTFE 197 (323)
Q Consensus 146 ~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~--l~F~~vd~~~~--------------------------~~~~~~~g 197 (323)
++++++.|...-- ..-......|.+++++|++ +.++.++.+.- ..+.+.||
T Consensus 32 gk~vll~F~a~wC-~~C~~~~~~l~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 110 (143)
T 4fo5_A 32 GRYTLLNFWAAYD-AESRARNVQLANEVNKFGPDKIAMCSISMDEKESIFTETVKIDKLDLSTQFHEGLGKESELYKKYD 110 (143)
T ss_dssp CCEEEEEEECTTC-HHHHHHHHHHHHHHTTSCTTTEEEEEEECCSCHHHHHHHHHHHTCCGGGEEECTTGGGSHHHHHTT
T ss_pred CCEEEEEEEcCcC-HHHHHHHHHHHHHHHHhCcCCEEEEEEEccCCHHHHHHHHHHhCCCCceeeecccccchHHHHHcC
Confidence 4666666654211 2234556777888888763 66666554411 12345566
Q ss_pred CcCCCCCCeEEEEeCCcceeeccCCCCCCCCCCHHHHHHHHHH
Q 020623 198 ANKKSKLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEG 240 (323)
Q Consensus 198 l~~~~~~P~ivI~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~~ 240 (323)
+ ...|..+++|.+++-... ....+.+.++++.
T Consensus 111 v---~~~P~~~lid~~G~i~~~--------~~~~~~l~~~l~~ 142 (143)
T 4fo5_A 111 L---RKGFKNFLINDEGVIIAA--------NVTPEKLTEILKA 142 (143)
T ss_dssp G---GGCCCEEEECTTSBEEEE--------SCCHHHHHHHHTC
T ss_pred C---CCCCcEEEECCCCEEEEc--------cCCHHHHHHHHHh
Confidence 6 367999999988754332 1456778777753
|
| >2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=88.21 E-value=2.6 Score=32.99 Aligned_cols=66 Identities=8% Similarity=0.176 Sum_probs=40.8
Q ss_pred CCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC--eEEEEEcCcchh-----------------------hHhhhcCCcC
Q 020623 146 KRKIVLAIVEDETEEKSQKLVTTLKAAASANRE--LVFCYVGIKQFA-----------------------DFADTFEANK 200 (323)
Q Consensus 146 ~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~--l~F~~vd~~~~~-----------------------~~~~~~gl~~ 200 (323)
++++++.|... .-..-......|.++++++++ +.++.++.+... .+...||+
T Consensus 35 gk~vll~F~a~-wC~~C~~~~~~l~~l~~~~~~~~~~vv~i~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v-- 111 (152)
T 2lrt_A 35 GKVVLIDFTVY-NNAMSAAHNLALRELYNKYASQGFEIYQISLDGDEHFWKTSADNLPWVCVRDANGAYSSYISLYNV-- 111 (152)
T ss_dssp GSEEEEEEECT-TCHHHHHHHHHHHHHHHHHGGGTEEEEEEECSCCHHHHHHHHTTCSSEEEECSSGGGCHHHHHHTC--
T ss_pred CCEEEEEEEcC-CChhhHHHHHHHHHHHHHhccCCeEEEEEEccCCHHHHHHHHhCCCceEEECCCCcchHHHHHcCc--
Confidence 36666666652 112234455667777777653 666666654322 15567787
Q ss_pred CCCCCeEEEEeCCcc
Q 020623 201 KSKLPKMVVWDGNEN 215 (323)
Q Consensus 201 ~~~~P~ivI~~~~~k 215 (323)
...|.++++|.+++
T Consensus 112 -~~~P~~~lid~~G~ 125 (152)
T 2lrt_A 112 -TNLPSVFLVNRNNE 125 (152)
T ss_dssp -CSCSEEEEEETTTE
T ss_pred -ccCceEEEECCCCe
Confidence 46899999998774
|
| >3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=87.50 E-value=1.9 Score=35.45 Aligned_cols=76 Identities=11% Similarity=0.166 Sum_probs=45.1
Q ss_pred ChhhHHHhhcCCCcEEEEEEeCCChhHHHHHHH-H--HHHHHHhCCC-eEEEEEcCcchhhHhhhc--------CCcCCC
Q 020623 135 NQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVT-T--LKAAASANRE-LVFCYVGIKQFADFADTF--------EANKKS 202 (323)
Q Consensus 135 t~~~~~~~~~~~~~~v~~f~~~~~~e~~~~~~~-~--l~~~A~~~~~-l~F~~vd~~~~~~~~~~~--------gl~~~~ 202 (323)
+.+.+......++|+++-|...- =..=..+.. . ..++|+.+.+ +.++.+|.++.+.+...| |+ .
T Consensus 28 ~~ea~~~A~~~~KpVlvdF~A~W-C~~Ck~m~~~~f~~~~va~~l~~~fv~ikVD~de~~~l~~~y~~~~q~~~gv---~ 103 (173)
T 3ira_A 28 GEEAFEKARKENKPVFLSIGYST-CHWCHMMAHESFEDEEVAGLMNEAFVSIKVDREERPDIDNIYMTVCQIILGR---G 103 (173)
T ss_dssp SHHHHHHHHHHTCCEEEEEECTT-CHHHHHHHHHTTTCHHHHHHHHHHCEEEEEETTTCHHHHHHHHHHHHHHHSC---C
T ss_pred CHHHHHHHHHhCCCEEEecccch-hHhhccccccccCCHHHHHHHHhcCceeeeCCcccCcHHHHHHHHHHHHcCC---C
Confidence 34556655556788877776421 011112221 1 1244444444 889999998766555444 77 5
Q ss_pred CCCeEEEEeCCc
Q 020623 203 KLPKMVVWDGNE 214 (323)
Q Consensus 203 ~~P~ivI~~~~~ 214 (323)
..|.++++++++
T Consensus 104 g~Pt~v~l~~dG 115 (173)
T 3ira_A 104 GWPLNIIMTPGK 115 (173)
T ss_dssp CSSEEEEECTTS
T ss_pred CCcceeeECCCC
Confidence 799999999765
|
| >2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=87.45 E-value=2.4 Score=38.95 Aligned_cols=88 Identities=8% Similarity=0.078 Sum_probs=57.0
Q ss_pred CCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC--eEEEEEcCcch---------------------------hhHhhhc
Q 020623 146 KRKIVLAIVEDETEEKSQKLVTTLKAAASANRE--LVFCYVGIKQF---------------------------ADFADTF 196 (323)
Q Consensus 146 ~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~--l~F~~vd~~~~---------------------------~~~~~~~ 196 (323)
++++++.|... .-..-......|.++++++++ +.|+.++.+.+ ..+++.|
T Consensus 82 GK~vLl~F~at-wC~~C~~~~p~L~~l~~~~~~~~v~vi~Vs~d~~~~~d~~~~~~~~~~~~~l~fpv~~D~~~~l~~~y 160 (352)
T 2hyx_A 82 GKVVLIDFWAY-SCINCQRAIPHVVGWYQAYKDSGLAVIGVHTPEYAFEKVPGNVAKGAANLGISYPIALDNNYATWTNY 160 (352)
T ss_dssp TSEEEEEEECT-TCHHHHHHHHHHHHHHHHHGGGTEEEEEEECCSSGGGGCHHHHHHHHHHHTCCSCEEECTTSHHHHHT
T ss_pred CCEEEEEEECC-CChhHHHHHHHHHHHHHHhhcCCeEEEEEECCcccccCCHHHHHHHHHHcCCCccEEeCCcHHHHHHc
Confidence 56777767652 112335566778888888763 77777764321 2344567
Q ss_pred CCcCCCCCCeEEEEeCCcc--eeeccCCCCCCCCCCHHHHHHHHHHHHcC
Q 020623 197 EANKKSKLPKMVVWDGNEN--YLTVIGSESIDEEDQGSQISRFLEGYREG 244 (323)
Q Consensus 197 gl~~~~~~P~ivI~~~~~k--Y~~~~~~~~~~~~~t~~~I~~Fi~~~~~G 244 (323)
++ ...|.++++|.+++ +... +..+.+.|.++|+.+++.
T Consensus 161 gV---~~~Pt~~lID~~G~Iv~~~~-------G~~~~~~l~~~I~~lL~e 200 (352)
T 2hyx_A 161 RN---RYWPAEYLIDATGTVRHIKF-------GEGDYNVTETLVRQLLND 200 (352)
T ss_dssp TC---CEESEEEEECTTSBEEEEEE-------SBCCHHHHHHHHHHHHHH
T ss_pred CC---CccCEEEEEeCCCeEEEEEc-------CCCCHHHHHHHHHHHHhh
Confidence 77 46799999998764 3221 235778999999998754
|
| >1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A | Back alignment and structure |
|---|
Probab=87.04 E-value=3.7 Score=31.45 Aligned_cols=68 Identities=10% Similarity=0.139 Sum_probs=44.7
Q ss_pred CCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCC---CeEEEEEcCcch------------------------hhHhhhcC
Q 020623 145 DKRKIVLAIVEDETEEKSQKLVTTLKAAASANR---ELVFCYVGIKQF------------------------ADFADTFE 197 (323)
Q Consensus 145 ~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~---~l~F~~vd~~~~------------------------~~~~~~~g 197 (323)
.++++++.|... .=..-......|.+++++++ ++.++.++.+.- ..+.+.||
T Consensus 27 ~gk~vll~F~a~-wC~~C~~~~~~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 105 (144)
T 1i5g_A 27 AGKTVFFYFSAS-WCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFD 105 (144)
T ss_dssp TTSEEEEEEECT-TCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTT
T ss_pred CCCEEEEEEECC-CCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCccccccCchHHHHHHHHHcC
Confidence 356777766652 11233566678888888876 377777766531 24566778
Q ss_pred CcCCCCCCeEEEEe-CCcce
Q 020623 198 ANKKSKLPKMVVWD-GNENY 216 (323)
Q Consensus 198 l~~~~~~P~ivI~~-~~~kY 216 (323)
+ ...|.+++++ .+++.
T Consensus 106 v---~~~P~~~lid~~~G~i 122 (144)
T 1i5g_A 106 V---KSIPTLVGVEADSGNI 122 (144)
T ss_dssp C---CSSSEEEEEETTTCCE
T ss_pred C---CCCCEEEEEECCCCcE
Confidence 8 4789999999 77654
|
| >1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A | Back alignment and structure |
|---|
Probab=86.68 E-value=3.9 Score=31.45 Aligned_cols=67 Identities=6% Similarity=0.122 Sum_probs=44.1
Q ss_pred CCcEEEEEEeCCChhHHHHHHHHHHHHHHhCC---CeEEEEEcCcch------------------------hhHhhhcCC
Q 020623 146 KRKIVLAIVEDETEEKSQKLVTTLKAAASANR---ELVFCYVGIKQF------------------------ADFADTFEA 198 (323)
Q Consensus 146 ~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~---~l~F~~vd~~~~------------------------~~~~~~~gl 198 (323)
++++++.|... .=..-......|.+++++++ ++.++.++.+.- ..+.+.||+
T Consensus 28 gk~vll~F~a~-wC~~C~~~~p~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v 106 (146)
T 1o8x_A 28 GKLVFFYFSAS-WCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNV 106 (146)
T ss_dssp TCEEEEEEECT-TCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCGGGHHHHHHHHHHTTC
T ss_pred CCEEEEEEEcc-CCHHHHHHHHHHHHHHHHhhhcCCeEEEEEeCCCCHHHHHHHHHHCCceeeccchhhHHHHHHHHhCC
Confidence 56777666652 11233566678888888876 377777766531 245667888
Q ss_pred cCCCCCCeEEEEe-CCcce
Q 020623 199 NKKSKLPKMVVWD-GNENY 216 (323)
Q Consensus 199 ~~~~~~P~ivI~~-~~~kY 216 (323)
...|.+++++ .+++-
T Consensus 107 ---~~~Pt~~lid~~~G~i 122 (146)
T 1o8x_A 107 ---ESIPTLIGVDADSGDV 122 (146)
T ss_dssp ---CSSSEEEEEETTTCCE
T ss_pred ---CCCCEEEEEECCCCeE
Confidence 4689999999 67643
|
| >3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major} | Back alignment and structure |
|---|
Probab=86.67 E-value=3.6 Score=32.83 Aligned_cols=68 Identities=3% Similarity=0.119 Sum_probs=45.0
Q ss_pred CCcEEEEEEeCCChhHHHHHHHHHHHHHHhCC---CeEEEEEcCcch------------------------hhHhhhcCC
Q 020623 146 KRKIVLAIVEDETEEKSQKLVTTLKAAASANR---ELVFCYVGIKQF------------------------ADFADTFEA 198 (323)
Q Consensus 146 ~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~---~l~F~~vd~~~~------------------------~~~~~~~gl 198 (323)
++++++.|...- =..-......|.+++++++ ++.++.++.+.- ..+++.||+
T Consensus 48 gk~vll~F~a~w-C~~C~~~~p~l~~l~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 126 (165)
T 3s9f_A 48 GKTVFFYFSASW-CPPCRGFTPQLVEFYEKHHDSKNFEIILASWDEEEDDFNAYYAKMPWLSIPFANRNIVEALTKKYSV 126 (165)
T ss_dssp TSEEEEEEECTT-CHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTTC
T ss_pred CCEEEEEEECCc-ChhHHHHHHHHHHHHHHhccCCCeEEEEEecCCCHHHHHHHHHhCCCcccccCchhHHHHHHHHcCC
Confidence 567777676521 1234566678888888876 366666665432 345677888
Q ss_pred cCCCCCCeEEEEeCC-ccee
Q 020623 199 NKKSKLPKMVVWDGN-ENYL 217 (323)
Q Consensus 199 ~~~~~~P~ivI~~~~-~kY~ 217 (323)
..+|.++|++.+ ++..
T Consensus 127 ---~~~Pt~~lid~~~G~iv 143 (165)
T 3s9f_A 127 ---ESIPTLIGLNADTGDTV 143 (165)
T ss_dssp ---CSSSEEEEEETTTCCEE
T ss_pred ---CCCCEEEEEeCCCCEEE
Confidence 578999999986 7543
|
| >1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=86.18 E-value=4.1 Score=31.10 Aligned_cols=67 Identities=7% Similarity=0.183 Sum_probs=43.6
Q ss_pred CCcEEEEEEeCCChhHHHHHHHHHHHHHHhCC---CeEEEEEcCcch------------------------hhHhhhcCC
Q 020623 146 KRKIVLAIVEDETEEKSQKLVTTLKAAASANR---ELVFCYVGIKQF------------------------ADFADTFEA 198 (323)
Q Consensus 146 ~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~---~l~F~~vd~~~~------------------------~~~~~~~gl 198 (323)
++++++.|... .=..-......|.+++++++ ++.++.++.+.- ..+.+.||+
T Consensus 28 gk~vll~F~a~-wC~~C~~~~~~l~~l~~~~~~~~~~~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 106 (144)
T 1o73_A 28 GKTVFLYFSAS-WCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSELGKTFGV 106 (144)
T ss_dssp TCEEEEEEECT-TCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHHTC
T ss_pred CCEEEEEEECc-CCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCceEeeccchhHHHHHHHHcCC
Confidence 56777766652 11223556677888888876 377776666531 235567788
Q ss_pred cCCCCCCeEEEEe-CCcce
Q 020623 199 NKKSKLPKMVVWD-GNENY 216 (323)
Q Consensus 199 ~~~~~~P~ivI~~-~~~kY 216 (323)
...|.+++++ .+++-
T Consensus 107 ---~~~Pt~~lid~~~G~i 122 (144)
T 1o73_A 107 ---ESIPTLITINADTGAI 122 (144)
T ss_dssp ---CSSSEEEEEETTTCCE
T ss_pred ---CCCCEEEEEECCCCeE
Confidence 4789999999 67643
|
| >2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A | Back alignment and structure |
|---|
Probab=85.92 E-value=3.3 Score=31.56 Aligned_cols=43 Identities=14% Similarity=0.162 Sum_probs=31.4
Q ss_pred chhhHhhcCCCCCCeEEEecCCCCCCc--cccCCCCHHHHHHHHHhh
Q 020623 82 SEDTMVLYDFDKVPALVALQPSYNEHN--IFYGPFDEEFLEEFIKQN 126 (323)
Q Consensus 82 ~~~~~~~~~~~~~p~ivv~k~~~~~~~--~y~g~~~~~~L~~fI~~~ 126 (323)
..+++..|++...|+++++.+ +... .+.|..+.+.|.++|...
T Consensus 99 ~~~~~~~~~v~~~P~~~lid~--~G~i~~~~~g~~~~~~l~~~l~~~ 143 (148)
T 2b5x_A 99 DHALTDAFENEYVPAYYVFDK--TGQLRHFQAGGSGMKMLEKRVNRV 143 (148)
T ss_dssp SCHHHHHTCCCCSSEEEEECT--TCBEEEEEESCSTTHHHHHHHHHH
T ss_pred chhHHHHhCCCCCCEEEEECC--CCcEEEEecCCCCHHHHHHHHHHH
Confidence 346778899988999999954 2333 345777788899988754
|
| >4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=83.46 E-value=5.9 Score=29.33 Aligned_cols=42 Identities=12% Similarity=0.194 Sum_probs=32.0
Q ss_pred chhhHhhcCCCCCCeEEEecCCCCCCc--cccCCCCHHHHHHHHHh
Q 020623 82 SEDTMVLYDFDKVPALVALQPSYNEHN--IFYGPFDEEFLEEFIKQ 125 (323)
Q Consensus 82 ~~~~~~~~~~~~~p~ivv~k~~~~~~~--~y~g~~~~~~L~~fI~~ 125 (323)
+.+++..|++...|+++++.+ +... .+.|..+.++|.++|++
T Consensus 93 ~~~~~~~~~v~~~P~~~lid~--~G~i~~~~~g~~~~~~l~~~l~~ 136 (138)
T 4evm_A 93 SGKLLETYGVRSYPTQAFIDK--EGKLVKTHPGFMEKDAILQTLKE 136 (138)
T ss_dssp TCHHHHHTTCCSSSEEEEECT--TCCEEEEEESCCCHHHHHHHHHH
T ss_pred chHHHHHcCcccCCeEEEECC--CCcEEEeecCCCcHHHHHHHHHh
Confidence 446778899988999999964 2333 45688889999999875
|
| >1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=83.02 E-value=12 Score=27.75 Aligned_cols=44 Identities=11% Similarity=0.126 Sum_probs=32.9
Q ss_pred chhhHhhcCCCCCCeEEEecCCCCCCcccc---CCCCHHHHHHHHHhh
Q 020623 82 SEDTMVLYDFDKVPALVALQPSYNEHNIFY---GPFDEEFLEEFIKQN 126 (323)
Q Consensus 82 ~~~~~~~~~~~~~p~ivv~k~~~~~~~~y~---g~~~~~~L~~fI~~~ 126 (323)
..+++..|++...|+++++.+. +....+. |..+.+.|.+||++.
T Consensus 88 ~~~~~~~~~i~~~P~~~lid~~-G~i~~~~~~~g~~~~~~l~~~l~~l 134 (136)
T 1lu4_A 88 DGVIWARYNVPWQPAFVFYRAD-GTSTFVNNPTAAMSQDELSGRVAAL 134 (136)
T ss_dssp TSHHHHHTTCCSSSEEEEECTT-SCEEEECCSSSCCCHHHHHHHHHHC
T ss_pred chhHHHhcCCCCCCEEEEECCC-CcEEEEEcCCCccCHHHHHHHHHHH
Confidence 4567778998889999999652 2222567 888899999999864
|
| >2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=83.02 E-value=8.5 Score=30.21 Aligned_cols=32 Identities=9% Similarity=-0.051 Sum_probs=22.2
Q ss_pred CeEEEEeCCcc--eeeccCCCCCCCCCCHHHHHHHHHHHHc
Q 020623 205 PKMVVWDGNEN--YLTVIGSESIDEEDQGSQISRFLEGYRE 243 (323)
Q Consensus 205 P~ivI~~~~~k--Y~~~~~~~~~~~~~t~~~I~~Fi~~~~~ 243 (323)
|.++|+|++++ +.+. +..+.+.|.+.|+.+++
T Consensus 131 ~~~~lid~~G~i~~~~~-------g~~~~~~l~~~l~~ll~ 164 (171)
T 2rli_A 131 IAIYLLNPDGLFTDYYG-------RSRSAEQISDSVRRHMA 164 (171)
T ss_dssp CEEEEECTTSCEEEEEE-------SSCCHHHHHHHHHHHHH
T ss_pred ceEEEECCCCeEEEEEC-------CCCCHHHHHHHHHHHHH
Confidence 48889998763 3332 23577888888888765
|
| >3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=82.17 E-value=9.9 Score=29.80 Aligned_cols=50 Identities=12% Similarity=0.113 Sum_probs=27.5
Q ss_pred hHhhhcCCcCC--CCCCeEEEEeCCcc--eeeccCCCCCCCCCCHHHHHHHHHHHHcC
Q 020623 191 DFADTFEANKK--SKLPKMVVWDGNEN--YLTVIGSESIDEEDQGSQISRFLEGYREG 244 (323)
Q Consensus 191 ~~~~~~gl~~~--~~~P~ivI~~~~~k--Y~~~~~~~~~~~~~t~~~I~~Fi~~~~~G 244 (323)
.+.+.||+ .+ ...|..+++|.+++ +... +. ....-..+.+.+.++....+
T Consensus 97 ~~~~~~~v-~~~~~~~P~~~lid~~G~i~~~~~-g~--~~~~~~~~~il~~l~~l~~~ 150 (161)
T 3drn_A 97 KIRELYGA-KGFILPARITFVIDKKGIIRHIYN-SQ--MNPANHVNEALKALKQIKEE 150 (161)
T ss_dssp HHHHHTTC-CCSSSCCCEEEEECTTSBEEEEEE-CS--SCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCC-CCcCcccceEEEECCCCEEEEEEe-cC--CCCCcCHHHHHHHHHHhhhh
Confidence 45667787 31 23899999998763 3332 21 11123445566666655443
|
| >3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=81.49 E-value=4.7 Score=31.14 Aligned_cols=46 Identities=11% Similarity=0.081 Sum_probs=33.8
Q ss_pred chhhHhhcCCCCCCeEEEecCCCCC-CccccCCCCHHHHHHHHHhhcC
Q 020623 82 SEDTMVLYDFDKVPALVALQPSYNE-HNIFYGPFDEEFLEEFIKQNFL 128 (323)
Q Consensus 82 ~~~~~~~~~~~~~p~ivv~k~~~~~-~~~y~g~~~~~~L~~fI~~~~~ 128 (323)
..+++..|++...|+++++.+. +. ...+.|..+.++|.++|++..-
T Consensus 98 ~~~~~~~~~v~~~P~~~lid~~-G~i~~~~~g~~~~~~l~~~l~~~~~ 144 (154)
T 3ia1_A 98 PHEVAARFKVLGQPWTFVVDRE-GKVVALFAGRAGREALLDALLLAGA 144 (154)
T ss_dssp HHHHHTTSSBCSSCEEEEECTT-SEEEEEEESBCCHHHHHHHHHHTTC
T ss_pred hHHHHHHhCCCcccEEEEECCC-CCEEEEEcCCCCHHHHHHHHHhccC
Confidence 4567778998889998888541 22 2345688889999999988753
|
| >2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=81.35 E-value=3 Score=34.25 Aligned_cols=54 Identities=7% Similarity=0.109 Sum_probs=31.8
Q ss_pred hHhhhcCCcC---CCCCCeEEEEeCCcc--eeeccCCCCCCCCCCHHHHHHHHHHHHcCcccc
Q 020623 191 DFADTFEANK---KSKLPKMVVWDGNEN--YLTVIGSESIDEEDQGSQISRFLEGYREGRTEQ 248 (323)
Q Consensus 191 ~~~~~~gl~~---~~~~P~ivI~~~~~k--Y~~~~~~~~~~~~~t~~~I~~Fi~~~~~Gkl~~ 248 (323)
.+...||+ . +...|.++++|.+++ +... +.. ....+.+.|.+.|+.+..|...|
T Consensus 117 ~~~~~~~v-~~~~g~~~P~~~lid~~G~i~~~~~-g~~--~~~~~~~~l~~~l~~l~~~~~~p 175 (195)
T 2bmx_A 117 ELSQAAGV-LNADGVADRVTFIVDPNNEIQFVSA-TAG--SVGRNVDEVLRVLDALQSDELCA 175 (195)
T ss_dssp HHHHHHTC-BCTTSSBCEEEEEECTTSBEEEEEE-ECT--TCCCCHHHHHHHHHHHHC-----
T ss_pred HHHHHhCC-cccCCCccceEEEEcCCCeEEEEEe-cCC--CCCCCHHHHHHHHHHHhhCCCcC
Confidence 45566777 2 116899999998763 3332 211 11236899999999999876655
|
| >2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A | Back alignment and structure |
|---|
Probab=80.94 E-value=10 Score=29.04 Aligned_cols=43 Identities=14% Similarity=0.399 Sum_probs=32.0
Q ss_pred hhhHhhcCCCCCCeEEEecCCCCCCc--cccCCCCHHHHHHHHHhhc
Q 020623 83 EDTMVLYDFDKVPALVALQPSYNEHN--IFYGPFDEEFLEEFIKQNF 127 (323)
Q Consensus 83 ~~~~~~~~~~~~p~ivv~k~~~~~~~--~y~g~~~~~~L~~fI~~~~ 127 (323)
.+++..|++...|+++++.+ +... .+.|..+.+.|.++|....
T Consensus 93 ~~~~~~~~v~~~P~~~lid~--~G~i~~~~~G~~~~~~l~~~l~~ll 137 (151)
T 2f9s_A 93 RQVLDAYDVSPLPTTFLINP--EGKVVKVVTGTMTESMIHDYMNLIK 137 (151)
T ss_dssp SHHHHHTTCCSSCEEEEECT--TSEEEEEEESCCCHHHHHHHHHHHS
T ss_pred hHHHHhcCCCCCCeEEEECC--CCcEEEEEeCCCCHHHHHHHHHHHH
Confidence 46777899888999988854 2332 4558888899999998653
|
| >2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=81.72 E-value=0.32 Score=37.13 Aligned_cols=64 Identities=13% Similarity=0.118 Sum_probs=42.0
Q ss_pred HHHHHhhcCceeEEeecc---cchhhHhhcCCCCCCeEEEecCCCCC---CccccCCCCHHHHHHHHHhh
Q 020623 63 SNLALKYKKKAWFAVAKD---FSEDTMVLYDFDKVPALVALQPSYNE---HNIFYGPFDEEFLEEFIKQN 126 (323)
Q Consensus 63 ~~~A~~~~~~~~F~~~~~---~~~~~~~~~~~~~~p~ivv~k~~~~~---~~~y~g~~~~~~L~~fI~~~ 126 (323)
.+++..+..++.|..++. ...+++.++++...|+++++.+..+. ...+.|..+.+.|.+||...
T Consensus 45 ~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~v~~~Pt~~~~d~~~G~~~~~~~~~G~~~~~~l~~~l~~~ 114 (130)
T 2lst_A 45 PGVSRLLEARFVVASVSVDTPEGQELARRYRVPGTPTFVFLVPKAGAWEEVGRLFGSRPRAEFLKELRQV 114 (130)
Confidence 566766665555544421 23467788999889999999542222 23466877788898888754
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 323 | ||||
| d1bjxa_ | 110 | c.47.1.2 (A:) Protein disulfide isomerase, PDI {Hu | 4e-06 | |
| d2djka1 | 133 | c.47.1.2 (A:1-133) Protein disulfide isomerase, PD | 2e-05 |
| >d1bjxa_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]} Length = 110 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.9 bits (101), Expect = 4e-06
Identities = 25/118 (21%), Positives = 38/118 (32%), Gaps = 18/118 (15%)
Query: 29 VSILNSDAEVSDFVENAGTFFPLFIGFGLDESVMSNLALKYKKKAWFAVAKDFSEDTMVL 88
+ L A VE++ IGF D K + A+ + +
Sbjct: 2 ATTLPDGAAAESLVESSEVAV---IGFFKDVE-------SDSAKQFLQAAEAIDDIPFGI 51
Query: 89 YDFDKV--------PALVALQPSYNEHNIFYGPFDEEFLEEFIKQNFLPLSVPINQDT 138
V +V + N F G +E L +FIK N LPL + + T
Sbjct: 52 TSNSDVFSKYQLDKDGVVLFKKFDEGRNNFEGEVTKENLLDFIKHNQLPLVIEFTEQT 109
|
| >d2djka1 c.47.1.2 (A:1-133) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]} Length = 133 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Fungi (Humicola insolens) [TaxId: 34413]
Score = 41.8 bits (98), Expect = 2e-05
Identities = 26/122 (21%), Positives = 42/122 (34%), Gaps = 7/122 (5%)
Query: 128 LPLSVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANR-ELVFCYVGI 186
PL I +T + + E T E+ ++L LK A A R + F +
Sbjct: 5 SPLIGEIGPETYSDYMSAGIPLAYIFAE--TAEERKELSDKLKPIAEAQRGVINFGTIDA 62
Query: 187 KQFADFADTFEANKKSKLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEGYREGRT 246
K F A K K P + + +N E + I F++ + G+
Sbjct: 63 KAFGAHAGNL-NLKTDKFPAFAIQEVAKNQKFPFDQEKEITFE---AIKAFVDDFVAGKI 118
Query: 247 EQ 248
E
Sbjct: 119 EP 120
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 323 | |||
| d2djka1 | 133 | Protein disulfide isomerase, PDI {Fungi (Humicola | 99.89 | |
| d2b5ea3 | 125 | Protein disulfide isomerase, PDI {Baker's yeast (S | 99.75 | |
| d1bjxa_ | 110 | Protein disulfide isomerase, PDI {Human (Homo sapi | 99.69 | |
| d1a8ya2 | 102 | Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax | 99.52 | |
| d1a8ya3 | 119 | Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax | 98.69 | |
| d1thxa_ | 108 | Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]} | 98.6 | |
| d1nw2a_ | 105 | Thioredoxin {Alicyclobacillus acidocaldarius, form | 98.42 | |
| d1dbya_ | 107 | Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305 | 98.38 | |
| d1fb6a_ | 104 | Thioredoxin {Spinach (Spinacia oleracea), thioredo | 98.32 | |
| d2b5ea4 | 119 | Protein disulfide isomerase, PDI {Baker's yeast (S | 98.31 | |
| d2b5ea4 | 119 | Protein disulfide isomerase, PDI {Baker's yeast (S | 98.28 | |
| d1syra_ | 103 | Thioredoxin {Malarial parasite (Plasmodium falcipa | 98.15 | |
| d2trxa_ | 108 | Thioredoxin {Escherichia coli [TaxId: 562]} | 98.14 | |
| d1a8ya1 | 124 | Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax | 98.08 | |
| d1meka_ | 120 | Protein disulfide isomerase, PDI {Human (Homo sapi | 98.06 | |
| d1r26a_ | 113 | Thioredoxin {Trypanosoma brucei [TaxId: 5691]} | 98.03 | |
| d1ep7a_ | 112 | Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305 | 97.96 | |
| d2b5ea1 | 140 | Protein disulfide isomerase, PDI {Baker's yeast (S | 97.93 | |
| d1a8ya1 | 124 | Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax | 97.93 | |
| d1f9ma_ | 112 | Thioredoxin {Spinach (Spinacia oleracea), thioredo | 97.9 | |
| d1thxa_ | 108 | Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]} | 97.88 | |
| d1nw2a_ | 105 | Thioredoxin {Alicyclobacillus acidocaldarius, form | 97.88 | |
| d2c0ga2 | 122 | Windbeutel, N-terminal domain {Fruit fly (Drosophi | 97.85 | |
| d1fb6a_ | 104 | Thioredoxin {Spinach (Spinacia oleracea), thioredo | 97.84 | |
| d1syra_ | 103 | Thioredoxin {Malarial parasite (Plasmodium falcipa | 97.83 | |
| d1ep7a_ | 112 | Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305 | 97.82 | |
| d1dbya_ | 107 | Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305 | 97.8 | |
| d1gh2a_ | 107 | Thioredoxin-like protein, N-terminal domain {Human | 97.77 | |
| d2ifqa1 | 105 | Thioredoxin {Human (Homo sapiens) [TaxId: 9606]} | 97.77 | |
| d1xwaa_ | 111 | Thioredoxin {Fruit fly (Drosophila melanogaster) [ | 97.74 | |
| d1g7ea_ | 122 | Endoplasmic reticulum protein ERP29, N-terminal do | 97.72 | |
| d1r26a_ | 113 | Thioredoxin {Trypanosoma brucei [TaxId: 5691]} | 97.72 | |
| d2trxa_ | 108 | Thioredoxin {Escherichia coli [TaxId: 562]} | 97.68 | |
| d1xfla_ | 114 | Thioredoxin {Thale cress (Arabidopsis thaliana) [T | 97.66 | |
| d2ifqa1 | 105 | Thioredoxin {Human (Homo sapiens) [TaxId: 9606]} | 97.65 | |
| d1gh2a_ | 107 | Thioredoxin-like protein, N-terminal domain {Human | 97.64 | |
| d1meka_ | 120 | Protein disulfide isomerase, PDI {Human (Homo sapi | 97.56 | |
| d2djja1 | 116 | Protein disulfide isomerase, PDI {Fungi (Humicola | 97.55 | |
| d1ti3a_ | 113 | Thioredoxin {European aspen (Populus tremula), thi | 97.47 | |
| d2b5ea1 | 140 | Protein disulfide isomerase, PDI {Baker's yeast (S | 97.46 | |
| d1zmaa1 | 115 | Bacterocin transport accessory protein Bta {Strept | 97.45 | |
| d2c0ga2 | 122 | Windbeutel, N-terminal domain {Fruit fly (Drosophi | 97.4 | |
| d1xfla_ | 114 | Thioredoxin {Thale cress (Arabidopsis thaliana) [T | 97.4 | |
| d1xwaa_ | 111 | Thioredoxin {Fruit fly (Drosophila melanogaster) [ | 97.38 | |
| d1a8la2 | 107 | Protein disulfide isomerase, PDI {Archaeon Pyrococ | 97.31 | |
| d1ti3a_ | 113 | Thioredoxin {European aspen (Populus tremula), thi | 97.24 | |
| d2es7a1 | 119 | Hydrogenase-1 operon protein HyaE {Salmonella typh | 97.24 | |
| d1f9ma_ | 112 | Thioredoxin {Spinach (Spinacia oleracea), thioredo | 97.16 | |
| d2djka1 | 133 | Protein disulfide isomerase, PDI {Fungi (Humicola | 97.15 | |
| d2hfda1 | 132 | Hydrogenase-1 operon protein HyaE {Escherichia col | 97.08 | |
| d2es7a1 | 119 | Hydrogenase-1 operon protein HyaE {Salmonella typh | 97.0 | |
| d2b5ea2 | 98 | Protein disulfide isomerase, PDI {Baker's yeast (S | 96.97 | |
| d1zmaa1 | 115 | Bacterocin transport accessory protein Bta {Strept | 96.93 | |
| d2djja1 | 116 | Protein disulfide isomerase, PDI {Fungi (Humicola | 96.92 | |
| d2hfda1 | 132 | Hydrogenase-1 operon protein HyaE {Escherichia col | 96.87 | |
| d1a8ya2 | 102 | Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax | 96.73 | |
| d1g7ea_ | 122 | Endoplasmic reticulum protein ERP29, N-terminal do | 96.64 | |
| d1nhoa_ | 85 | MTH807, thioredoxin/glutaredoxin-like protein {Arc | 96.59 | |
| d1hyua4 | 96 | Alkyl hydroperoxide reductase subunit F (AhpF), N- | 96.53 | |
| d1bjxa_ | 110 | Protein disulfide isomerase, PDI {Human (Homo sapi | 96.45 | |
| d2b5ea3 | 125 | Protein disulfide isomerase, PDI {Baker's yeast (S | 96.27 | |
| d2trcp_ | 217 | Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]} | 96.13 | |
| d1qgva_ | 137 | spliceosomal protein U5-15Kd {Human (Homo sapiens) | 96.06 | |
| d1woua_ | 119 | Putative 42-9-9 protein (thioredoxin containing pr | 96.04 | |
| d1qgva_ | 137 | spliceosomal protein U5-15Kd {Human (Homo sapiens) | 95.85 | |
| d1fo5a_ | 85 | MJ0307, thioredoxin/glutaredoxin-like protein {Arc | 95.77 | |
| d1nhoa_ | 85 | MTH807, thioredoxin/glutaredoxin-like protein {Arc | 95.42 | |
| d2trcp_ | 217 | Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]} | 95.39 | |
| d1fo5a_ | 85 | MJ0307, thioredoxin/glutaredoxin-like protein {Arc | 95.36 | |
| d1a8la2 | 107 | Protein disulfide isomerase, PDI {Archaeon Pyrococ | 95.1 | |
| d2fwha1 | 117 | Thiol:disulfide interchange protein DsbD, C-termin | 95.03 | |
| d1woua_ | 119 | Putative 42-9-9 protein (thioredoxin containing pr | 94.91 | |
| d2fwha1 | 117 | Thiol:disulfide interchange protein DsbD, C-termin | 91.73 | |
| d1hyua4 | 96 | Alkyl hydroperoxide reductase subunit F (AhpF), N- | 91.7 | |
| d2fy6a1 | 143 | Peptide methionine sulfoxide reductase MsrA/MsrB, | 87.94 | |
| d1st9a_ | 137 | Thiol-disulfide oxidoreductase ResA {Bacillus subt | 87.34 | |
| d1a8la1 | 119 | Protein disulfide isomerase, PDI {Archaeon Pyrococ | 86.81 | |
| d1lu4a_ | 134 | Soluble secreted antigen MPT53 {Mycobacterium tube | 85.56 | |
| d1zzoa1 | 134 | Lipoprotein DsbF {Mycobacterium tuberculosis [TaxI | 84.84 | |
| d2cvba1 | 187 | Probable thiol-disulfide isomerase/thioredoxin TTH | 82.92 | |
| d1wjka_ | 100 | Thioredoxin-like structure containing protein C330 | 81.18 | |
| d1st9a_ | 137 | Thiol-disulfide oxidoreductase ResA {Bacillus subt | 80.84 |
| >d2djka1 c.47.1.2 (A:1-133) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Fungi (Humicola insolens) [TaxId: 34413]
Probab=99.89 E-value=6.4e-23 Score=165.00 Aligned_cols=123 Identities=20% Similarity=0.267 Sum_probs=108.4
Q ss_pred cCCCeeecChhhHHHhhcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC-eEEEEEcCcchhhHhhhcCCcCCCCCC
Q 020623 127 FLPLSVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLP 205 (323)
Q Consensus 127 ~~Plv~~~t~~~~~~~~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~-l~F~~vd~~~~~~~~~~~gl~~~~~~P 205 (323)
.+|+|+++|.+|+..|+..++|++++|++. .++.+++.+.|+++|++|++ ++|+|+|++++++.+++||+ +..++|
T Consensus 4 ~lPLv~e~~~~n~~~~~~~~~pl~~lf~~~--~~~~~~~~~~~~~vA~~~~~ki~Fv~vd~~~~~~~l~~~gl-~~~~~P 80 (133)
T d2djka1 4 GSPLIGEIGPETYSDYMSAGIPLAYIFAET--AEERKELSDKLKPIAEAQRGVINFGTIDAKAFGAHAGNLNL-KTDKFP 80 (133)
T ss_dssp SCCCSEECCHHHHHHHHHTTSCEEEEECSC--SSSHHHHHHHHHHHHHSSTTTSEEEEECTTTTGGGTTTTTC-CSSSSS
T ss_pred CCCceeccChhhHHHHhcCCCCEEEEEeCC--chHHHHHHHHHHHHHHHhcCceEEEEEeHHHhHHHHHHhcC-CcccCC
Confidence 589999999999999999999999988764 34568899999999999999 99999999999999999999 789999
Q ss_pred eEEEEeCCc--ceeeccCCCCCCCCCCHHHHHHHHHHHHcCcccccccCC--CCCC
Q 020623 206 KMVVWDGNE--NYLTVIGSESIDEEDQGSQISRFLEGYREGRTEQKKVAG--PSIF 257 (323)
Q Consensus 206 ~ivI~~~~~--kY~~~~~~~~~~~~~t~~~I~~Fi~~~~~Gkl~~~~kSe--P~~~ 257 (323)
+++|++.++ +|.+.. +.+++.++|.+||++|++|+++|++||| |+.|
T Consensus 81 ~~~i~~~~~~~~~~~~~-----~~~i~~~~i~~Fi~d~~~Gkl~p~~kSe~iPe~~ 131 (133)
T d2djka1 81 AFAIQEVAKNQKFPFDQ-----EKEITFEAIKAFVDDFVAGKIEPSIKSEPIPEKQ 131 (133)
T ss_dssp EEEEECTTTCCBCCCCS-----SSCCCHHHHHHHHHHHHHTCCCCSSCCCCCCTTS
T ss_pred cEEEEEcCCCceecCCc-----cccCCHHHHHHHHHHHHcCCCCcccccCCCCCCC
Confidence 999999743 555432 4568999999999999999999999999 7665
|
| >d2b5ea3 c.47.1.2 (A:240-364) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.75 E-value=4.6e-18 Score=134.72 Aligned_cols=114 Identities=16% Similarity=0.194 Sum_probs=97.6
Q ss_pred eeecChhhHHHhhcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC-eEEEEEcCcchhhHhhhcCCcCCCCCCeEEE
Q 020623 131 SVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVV 209 (323)
Q Consensus 131 v~~~t~~~~~~~~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~-l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI 209 (323)
+++++++|+..|+.+++|++++|++ +.++.+++.+.++++|++||+ ++|+|+|.+++++.++.||+ + +++|+++|
T Consensus 2 ~gei~~~~~~~y~~~~~Pl~~~f~~--~~~~~~~~~~~~~~vAk~fkgki~Fv~~D~~~~~~~l~~fgl-~-e~~P~~~i 77 (125)
T d2b5ea3 2 FGEIDGSVFAQYVESGLPLGYLFYN--DEEELEEYKPLFTELAKKNRGLMNFVSIDARKFGRHAGNLNM-K-EQFPLFAI 77 (125)
T ss_dssp SCBCCHHHHHHHHHTTSCEEEEEES--SHHHHHHHHHHHHHHHHHTTTTCEEEEEEHHHHTTHHHHTTC-C-SCSSEEEE
T ss_pred CCccCHHHHHHHHhcCCCEEEEEeC--ChHHHHHHHHHHHHHHHHhcCeeEEEEEchHHhHHHHHHcCC-C-ccCCcEEE
Confidence 5799999999999999999999887 456788999999999999999 99999999999999999999 5 57999999
Q ss_pred EeCC--cceeeccCCC------CCCCCCCHHHHHHHHHHHHcCcccc
Q 020623 210 WDGN--ENYLTVIGSE------SIDEEDQGSQISRFLEGYREGRTEQ 248 (323)
Q Consensus 210 ~~~~--~kY~~~~~~~------~~~~~~t~~~I~~Fi~~~~~Gkl~~ 248 (323)
++.. .||.+..... ....++|.++|.+|+++|++|||+|
T Consensus 78 ~~~~~~~ky~~~~~~~~~~~~~~~~~e~t~~~i~~F~~d~l~GKlkP 124 (125)
T d2b5ea3 78 HDMTEDLKYGLPQLSEEAFDELSDKIVLESKAIESLVKDFLKGDASP 124 (125)
T ss_dssp EETTTTEEEECCCCCHHHHHTCCSCCCCCHHHHHHHHHHHHHTCCCC
T ss_pred EecccCcccccchhhhhhcccccccccCCHHHHHHHHHHHHcCCcCC
Confidence 9873 4787642110 0135699999999999999999998
|
| >d1bjxa_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=1.1e-16 Score=123.88 Aligned_cols=105 Identities=26% Similarity=0.338 Sum_probs=89.9
Q ss_pred CceecCChHHHHHHHHhcCCcccEEEEecCC--h---hHHHHHHHhhcCceeEEeecccchhhHhhcCCCCCCeEEEecC
Q 020623 28 DVSILNSDAEVSDFVENAGTFFPLFIGFGLD--E---SVMSNLALKYKKKAWFAVAKDFSEDTMVLYDFDKVPALVALQP 102 (323)
Q Consensus 28 ~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--~---~~f~~~A~~~~~~~~F~~~~~~~~~~~~~~~~~~~p~ivv~k~ 102 (323)
+++.|+|.+++++|++.++ +++||||++ + +.|.++|+.++ ++.|+++ .+.+++.+++++ .|+|++||+
T Consensus 1 aa~~l~~~~~~e~f~~~~~---v~VVGfF~~~~~~~~~~F~~~A~~~~-d~~F~~t--~~~~v~~~~~v~-~~~Ivl~k~ 73 (110)
T d1bjxa_ 1 AATTLPDGAAAESLVESSE---VAVIGFFKDVESDSAKQFLQAAEAID-DIPFGIT--SNSDVFSKYQLD-KDGVVLFKK 73 (110)
T ss_dssp CEEECCSHHHHHHHHHHSS---EEEEEECTTTTSHHHHHHHHHHHHCS-SSCEEEE--CCSHHHHHTTCS-SCEEEEEES
T ss_pred CceEcCCHHHHHHHhccCC---eEEEEEEcCCCchHHHHHHHHHHhCc-CceEEEE--CCHHHHHHcCCC-CCeEEEecc
Confidence 3578999999999999998 589999864 2 36889999985 6888888 577899999984 699999999
Q ss_pred CCCCCccccCCCCHHHHHHHHHhhcCCCeeecChhhH
Q 020623 103 SYNEHNIFYGPFDEEFLEEFIKQNFLPLSVPINQDTL 139 (323)
Q Consensus 103 ~~~~~~~y~g~~~~~~L~~fI~~~~~Plv~~~t~~~~ 139 (323)
..+.+..|.|+++.++|.+||+.+++|+|+++|++|+
T Consensus 74 ~de~~~~~~~~~~~~~l~~fi~~~~~PlV~e~~~e~A 110 (110)
T d1bjxa_ 74 FDEGRNNFEGEVTKENLLDFIKHNQLPLVIEFTEQTA 110 (110)
T ss_dssp SSSSBCCCCSCCCHHHHHHHHHHHSSCCCSSCCCTTC
T ss_pred CCccccccCCCCCHHHHHHHHHHcCcCcEEecCCCCC
Confidence 6666667788999999999999999999999999873
|
| >d1a8ya2 c.47.1.3 (A:127-228) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Calsequestrin domain: Calsequestrin species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=99.52 E-value=2.5e-14 Score=108.31 Aligned_cols=94 Identities=15% Similarity=0.221 Sum_probs=80.8
Q ss_pred ceecCChHHHHHHHH-hcCCcccEEEEecCCh-----hHHHHHHHhhcCceeEEeecccchhhHhhcCCCCCCeEEEecC
Q 020623 29 VSILNSDAEVSDFVE-NAGTFFPLFIGFGLDE-----SVMSNLALKYKKKAWFAVAKDFSEDTMVLYDFDKVPALVALQP 102 (323)
Q Consensus 29 v~~i~s~~~l~~fl~-~~~~~~~~vVgf~~~~-----~~f~~~A~~~~~~~~F~~~~~~~~~~~~~~~~~~~p~ivv~k~ 102 (323)
|..|+|.++++.|++ +++ +++||||++. +.|.++|..+++++.|+++ ++++++.++|+ +.|+|++||+
T Consensus 1 v~~i~~~~e~~~F~~~~d~---v~VvGfF~~~~~~~~~~F~~~A~~~rd~~~F~~t--~d~~va~~~~v-~~~~vvlfr~ 74 (102)
T d1a8ya2 1 VELIEGERELQAFENIEDE---IKLIGYFKNKDSEHYKAFKEAAEEFHPYIPFFAT--FDSKVAKKLTL-KLNEIDFYEA 74 (102)
T ss_dssp EEEECSHHHHHHHTTCCSS---CEEEEECSSTTCHHHHHHHHHHHHHTTTSCEEEE--CCHHHHHHHCC-CTTCEEEECT
T ss_pred CeeecCHHHHHHHhccCCC---EEEEEEECCCCcHHHHHHHHHHHHcCCCceEEEE--CCHHHHHHcCC-CCCCEEEeee
Confidence 567899999999998 455 5899998642 3788999999999999999 68899999999 5899999999
Q ss_pred CCCCCccccC-CCCHHHHHHHHHhhcC
Q 020623 103 SYNEHNIFYG-PFDEEFLEEFIKQNFL 128 (323)
Q Consensus 103 ~~~~~~~y~g-~~~~~~L~~fI~~~~~ 128 (323)
.++.+..|.| +++.++|.+||+.|+.
T Consensus 75 fde~~~~~~~~~~t~~~i~~Fi~~n~r 101 (102)
T d1a8ya2 75 FMEEPVTIPDKPNSEEEIVNFVEEHRR 101 (102)
T ss_dssp TCSSEEECSSSSCCHHHHHHHHHHTCC
T ss_pred cCCCceecCCCCCCHHHHHHHHHHhcc
Confidence 7667788988 4899999999999874
|
| >d1a8ya3 c.47.1.3 (A:229-347) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Calsequestrin domain: Calsequestrin species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=98.69 E-value=9.1e-08 Score=70.89 Aligned_cols=106 Identities=15% Similarity=0.283 Sum_probs=77.5
Q ss_pred eeecChhhHHHhhcCC--CcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC---eEEEEEcCcchhhHh----hhcCCcCC
Q 020623 131 SVPINQDTLNLLKDDK--RKIVLAIVEDETEEKSQKLVTTLKAAASANRE---LVFCYVGIKQFADFA----DTFEANKK 201 (323)
Q Consensus 131 v~~~t~~~~~~~~~~~--~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~---l~F~~vd~~~~~~~~----~~~gl~~~ 201 (323)
+.+++.+++.....+. ..++++|+..+ ..++.++.+.++++|+.+.+ +.|+|+|.+.|+-+. ..|||+
T Consensus 2 lrKl~~e~m~e~W~dd~~g~~IvAFaee~-d~dG~eFl~ilk~vA~~nt~n~~LsivWIDPD~FPlm~~yWe~tF~ID-- 78 (119)
T d1a8ya3 2 LRKLKPESMYETWEDDMDGIHIVAFAEEA-DPDGYEFLEILKSVAQDNTDNPDLSIIWIDPDDFPLLVPYWEKTFDID-- 78 (119)
T ss_dssp EEECCTTTHHHHHTCCBTTEEEEEECCTT-SHHHHHHHHHHHHHHHHSTTCSSCCEEEECGGGCTTTHHHHHHHHTCC--
T ss_pred ccccchHHHHHHHhcccCCceEEEEecCC-CccHHHHHHHHHHHHHHcCcCCCceEEEECCcccchHHHHHHHhcCCC--
Confidence 4678888888876653 45677787653 44578899999999999874 999999999997543 579994
Q ss_pred CCCCeEEEEeCC---cceeeccCCCCCCCCCCHHHHHHHHHHHH
Q 020623 202 SKLPKMVVWDGN---ENYLTVIGSESIDEEDQGSQISRFLEGYR 242 (323)
Q Consensus 202 ~~~P~ivI~~~~---~kY~~~~~~~~~~~~~t~~~I~~Fi~~~~ 242 (323)
-..|+|.++|.. +.++.+++.+ +..|.+.++.||++++
T Consensus 79 l~~PqIGVVdv~dadSvW~~~~~~~---d~~t~~~Le~WiedVl 119 (119)
T d1a8ya3 79 LSAPQIGVVNVTDADSVWMEMDDEE---DLPSAEELEDWLEDVL 119 (119)
T ss_dssp TTSCEEEEEETTTCCEEECC----------CCHHHHHHHHHHHC
T ss_pred CCCCceeeEecccCcceeeeccccc---ccccHHHHHHHHHHhC
Confidence 446999999973 4666554322 2358999999999874
|
| >d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Anabaena sp., pcc 7120 [TaxId: 1167]
Probab=98.60 E-value=4.6e-07 Score=68.03 Aligned_cols=104 Identities=10% Similarity=0.128 Sum_probs=80.5
Q ss_pred CeeecChhhHHH-hhcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC-eEEEEEcCcchhhHhhhcCCcCCCCCCeE
Q 020623 130 LSVPINQDTLNL-LKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKM 207 (323)
Q Consensus 130 lv~~~t~~~~~~-~~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~-l~F~~vd~~~~~~~~~~~gl~~~~~~P~i 207 (323)
-|.++|.+|+.. +.++++|+++.|... .-..-..+...+.++|.++++ +.|+.+|++..+.+++.|++ ..+|.+
T Consensus 3 ~V~~lt~~~f~~~v~~~~~~vlv~f~a~-wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~I---~~~Pt~ 78 (108)
T d1thxa_ 3 GVITITDAEFESEVLKAEQPVLVYFWAS-WCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNPTTVKKYKV---EGVPAL 78 (108)
T ss_dssp SEEECCGGGHHHHTTTCSSCEEEEEECT-TCTTHHHHHHHHHHHHHHTTTTCEEEEEESTTCHHHHHHTTC---CSSSEE
T ss_pred CceECCHHHHHHHHHhCCCcEEEEEECC-CCCCccccchHHHHHHHhcCCcceeceecccccHHHHHHhcc---cCCCEE
Confidence 478999999986 556678888777753 122346777899999999998 99999999988889999999 579999
Q ss_pred EEEeCCcceeeccCCCCCCCCCCHHHHHHHHHHHHc
Q 020623 208 VVWDGNENYLTVIGSESIDEEDQGSQISRFLEGYRE 243 (323)
Q Consensus 208 vI~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~~~~~ 243 (323)
+++...+..... .+..+.+.|.+||+.+++
T Consensus 79 ~~~~~g~~v~~~------~G~~~~~~l~~~i~~~Ln 108 (108)
T d1thxa_ 79 RLVKGEQILDST------EGVISKDKLLSFLDTHLN 108 (108)
T ss_dssp EEEETTEEEEEE------ESCCCHHHHHHHHHHHHC
T ss_pred EEEECCEEEEEE------eCCCCHHHHHHHHHHhcC
Confidence 998754322222 234688999999999875
|
| >d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]
Probab=98.42 E-value=7.1e-07 Score=66.59 Aligned_cols=102 Identities=10% Similarity=0.214 Sum_probs=80.2
Q ss_pred eeecChhhHHHhhcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC-eEEEEEcCcchhhHhhhcCCcCCCCCCeEEE
Q 020623 131 SVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVV 209 (323)
Q Consensus 131 v~~~t~~~~~~~~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~-l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI 209 (323)
...+|.+|+....++++|+++.|... .-..-..+...+.++|+++++ +.|+.+|++..+.+++.|++ ..+|.+++
T Consensus 2 ~i~lt~~~f~~~i~~~k~vvv~F~a~-wC~~C~~~~~~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~V---~~~Pt~~~ 77 (105)
T d1nw2a_ 2 TMTLTDANFQQAIQGDKPVLVDFWAA-WCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGI---MSIPTLIL 77 (105)
T ss_dssp CEEECTTTHHHHTTSSSCEEEEEECT-TCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTCHHHHHHTTC---CBSSEEEE
T ss_pred EEEECHHHHHHHHhCCCcEEEEEECC-CCCCcccccchhhhhhhhcCCceEEEEEECCCCcccHHHCCc---ceeeEEEE
Confidence 35789999999888888988888764 223456788899999999998 99999999998899999999 57899999
Q ss_pred EeCCcceeeccCCCCCCCCCCHHHHHHHHHHHH
Q 020623 210 WDGNENYLTVIGSESIDEEDQGSQISRFLEGYR 242 (323)
Q Consensus 210 ~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~~~~ 242 (323)
....+...... +..+.+.|.+||++++
T Consensus 78 ~~~G~~~~~~~------G~~~~~~l~~~i~~~L 104 (105)
T d1nw2a_ 78 FKGGEPVKQLI------GYQPKEQLEAQLADVL 104 (105)
T ss_dssp EETTEEEEEEE------SCCCHHHHHHHTTTTC
T ss_pred EECCEEEEEEE------CCCCHHHHHHHHHHHh
Confidence 87543322222 3467899999988764
|
| >d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Chlamydomonas reinhardtii [TaxId: 3055]
Probab=98.38 E-value=2.7e-06 Score=63.47 Aligned_cols=102 Identities=12% Similarity=0.203 Sum_probs=78.8
Q ss_pred eeecChhhHHHh-hcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC-eEEEEEcCcchhhHhhhcCCcCCCCCCeEE
Q 020623 131 SVPINQDTLNLL-KDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMV 208 (323)
Q Consensus 131 v~~~t~~~~~~~-~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~-l~F~~vd~~~~~~~~~~~gl~~~~~~P~iv 208 (323)
++.+|.+++... ..+++|+++.|... --..-..+...+.++++++.+ +.|+.+|++..+.+++.|++ ..+|.++
T Consensus 3 ~~~i~~~~f~~~v~~s~kpvlv~F~a~-wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~V---~~~Pt~~ 78 (107)
T d1dbya_ 3 AGAVNDDTFKNVVLESSVPVLVDFWAP-WCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNVASEYGI---RSIPTIM 78 (107)
T ss_dssp CEEECHHHHHHHTTTCSSCEEEEEECT-TCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHHTC---CSSCEEE
T ss_pred ceEecHHHHHHHHHhCCCcEEEEEECC-CCCCccccChHHHHHHHhhcccceEEEEecccchhHHHHhcc---cceEEEE
Confidence 467899999775 56678888777763 223456777899999999987 99999999988889999999 5899999
Q ss_pred EEeCCcc-eeeccCCCCCCCCCCHHHHHHHHHHHHc
Q 020623 209 VWDGNEN-YLTVIGSESIDEEDQGSQISRFLEGYRE 243 (323)
Q Consensus 209 I~~~~~k-Y~~~~~~~~~~~~~t~~~I~~Fi~~~~~ 243 (323)
++...+. ..+ .+..+.+.|.+||+.+++
T Consensus 79 ~~~~G~~v~~~-------~G~~~~~~l~~~i~~~L~ 107 (107)
T d1dbya_ 79 VFKGGKKCETI-------IGAVPKATIVQTVEKYLN 107 (107)
T ss_dssp EESSSSEEEEE-------ESCCCHHHHHHHHHHHCC
T ss_pred EEECCeEEEEE-------eCCCCHHHHHHHHHHhhC
Confidence 9875332 222 234688999999999875
|
| >d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]
Probab=98.32 E-value=4.7e-06 Score=61.72 Aligned_cols=102 Identities=8% Similarity=0.149 Sum_probs=77.7
Q ss_pred eeecChhhHHHh-hcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC-eEEEEEcCcchhhHhhhcCCcCCCCCCeEE
Q 020623 131 SVPINQDTLNLL-KDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMV 208 (323)
Q Consensus 131 v~~~t~~~~~~~-~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~-l~F~~vd~~~~~~~~~~~gl~~~~~~P~iv 208 (323)
|.++|.+++... ..+++|+++.|... --..-..+...+.++++++++ +.++.+|.+..+.+++.||+ ...|.++
T Consensus 1 v~el~d~~f~~~v~~~~~~vlv~F~a~-wC~~C~~~~~~~~~l~~~~~~~~~~~~v~~d~~~~l~~~~~V---~~~Pt~~ 76 (104)
T d1fb6a_ 1 VQDVNDSSWKEFVLESEVPVMVDFWAP-WCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNI---RSIPTVL 76 (104)
T ss_dssp CEECCTTTHHHHTTTCSSCEEEEEECT-TCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTC---CSSSEEE
T ss_pred CeECchhhHHHHHHcCCCcEEEEEEcC-ccCCccccCchhHHHHHhhcCccceeEEecccchhhhhhcce---eeeeEEE
Confidence 568999999875 45667888777763 123456777899999999998 99999999988899999999 5899999
Q ss_pred EEeCCcceeeccCCCCCCCCCCHHHHHHHHHHHH
Q 020623 209 VWDGNENYLTVIGSESIDEEDQGSQISRFLEGYR 242 (323)
Q Consensus 209 I~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~~~~ 242 (323)
+....+..... .+..+.+.|.+||++++
T Consensus 77 ~~~~G~~v~~~------~G~~~~~~l~~~i~~~L 104 (104)
T d1fb6a_ 77 FFKNGERKESI------IGAVPKSTLTDSIEKYL 104 (104)
T ss_dssp EEETTEEEEEE------EECCCHHHHHHHHHHHC
T ss_pred EEEcCeEEEEE------eCCCCHHHHHHHHHHhC
Confidence 88654322222 23468899999999874
|
| >d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.31 E-value=3e-06 Score=64.60 Aligned_cols=98 Identities=14% Similarity=0.147 Sum_probs=75.0
Q ss_pred CceecCChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcC-ceeEEeecc-cchhhHhhcCCCCCCeE
Q 020623 28 DVSILNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKK-KAWFAVAKD-FSEDTMVLYDFDKVPAL 97 (323)
Q Consensus 28 ~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~-~~~F~~~~~-~~~~~~~~~~~~~~p~i 97 (323)
.|..|+ .+.+++++++++ .++|-|... ...|.++|..+++ .+.|+.++. ...+++.++++.+.|++
T Consensus 11 ~v~~lt-~~~f~~~i~~~~---~~lV~fya~wC~~C~~~~~~~~~la~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti 86 (119)
T d2b5ea4 11 AVVKLA-TDSFNEYIQSHD---LVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTENQDLCMEHNIPGFPSL 86 (119)
T ss_dssp SCEECC-TTTHHHHHTTCS---EEEEEEECTTCHHHHHHHHHHHHHHHHTTTTTCEEEEEETTTCHHHHHHTTCCSSSEE
T ss_pred ccEEcC-HHHHHHHHhcCC---eEEEEEECCccCcccccchhhhhhhhhhcccceeeeeeeccchHHHHHHhccccCCeE
Confidence 478885 588999998776 467777542 2478899998864 478877642 35688899999999999
Q ss_pred EEecCCCC-CCccccCCCCHHHHHHHHHhhcCC
Q 020623 98 VALQPSYN-EHNIFYGPFDEEFLEEFIKQNFLP 129 (323)
Q Consensus 98 vv~k~~~~-~~~~y~g~~~~~~L~~fI~~~~~P 129 (323)
++|+++.. ....|.|+.+.++|.+||++++-|
T Consensus 87 ~~f~~g~~~~~~~y~g~~~~~~l~~fi~k~~~P 119 (119)
T d2b5ea4 87 KIFKNSDVNNSIDYEGPRTAEAIVQFMIKQSQP 119 (119)
T ss_dssp EEEETTCTTCEEECCSCCSHHHHHHHHHHHTSC
T ss_pred EEEECCEEeeeEEecCCCCHHHHHHHHHHhhCC
Confidence 99986422 334688999999999999998766
|
| >d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.28 E-value=9.4e-06 Score=61.72 Aligned_cols=101 Identities=10% Similarity=0.163 Sum_probs=78.0
Q ss_pred CeeecChhhHHHhhcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC--eEEEEEcCcchhhHhhhcCCcCCCCCCeE
Q 020623 130 LSVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE--LVFCYVGIKQFADFADTFEANKKSKLPKM 207 (323)
Q Consensus 130 lv~~~t~~~~~~~~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~--l~F~~vd~~~~~~~~~~~gl~~~~~~P~i 207 (323)
.|.++|.+++..+...++++++.|... -=..-+++...+.++|+.+++ +.|+.+|+++++.++..|++ ..+|.+
T Consensus 11 ~v~~lt~~~f~~~i~~~~~~lV~fya~-wC~~C~~~~~~~~~la~~~~~~~v~~~~vd~~~~~~l~~~~~v---~~~Pti 86 (119)
T d2b5ea4 11 AVVKLATDSFNEYIQSHDLVLAEFFAP-WCGHCKNMAPEYVKAAETLVEKNITLAQIDCTENQDLCMEHNI---PGFPSL 86 (119)
T ss_dssp SCEECCTTTHHHHHTTCSEEEEEEECT-TCHHHHHHHHHHHHHHHHTTTTTCEEEEEETTTCHHHHHHTTC---CSSSEE
T ss_pred ccEEcCHHHHHHHHhcCCeEEEEEECC-ccCcccccchhhhhhhhhhcccceeeeeeeccchHHHHHHhcc---ccCCeE
Confidence 588999999999887777777767653 123456788899999999874 99999999988889999999 579999
Q ss_pred EEEeCCc---ceeeccCCCCCCCCCCHHHHHHHHHHH
Q 020623 208 VVWDGNE---NYLTVIGSESIDEEDQGSQISRFLEGY 241 (323)
Q Consensus 208 vI~~~~~---kY~~~~~~~~~~~~~t~~~I~~Fi~~~ 241 (323)
++....+ .+.+ .+..+.++|.+||++.
T Consensus 87 ~~f~~g~~~~~~~y-------~g~~~~~~l~~fi~k~ 116 (119)
T d2b5ea4 87 KIFKNSDVNNSIDY-------EGPRTAEAIVQFMIKQ 116 (119)
T ss_dssp EEEETTCTTCEEEC-------CSCCSHHHHHHHHHHH
T ss_pred EEEECCEEeeeEEe-------cCCCCHHHHHHHHHHh
Confidence 9875322 2222 2357899999999975
|
| >d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=98.15 E-value=8.1e-06 Score=60.42 Aligned_cols=93 Identities=15% Similarity=0.278 Sum_probs=68.8
Q ss_pred ceecCChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeec-ccchhhHhhcCCCCCCeEEE
Q 020623 29 VSILNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAK-DFSEDTMVLYDFDKVPALVA 99 (323)
Q Consensus 29 v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~-~~~~~~~~~~~~~~~p~ivv 99 (323)
+..|+|.+++++++++++ +++|-|+.. ...+.+++.++.+ ..|+..+ +-.++++.++++...|++++
T Consensus 2 v~~i~s~~~f~~~i~~~~---~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~-~~~~~vd~d~~~~~~~~~~V~~~Pt~i~ 77 (103)
T d1syra_ 2 VKIVTSQAEFDSIISQNE---LVIVDFFAEWCGPCKRIAPFYEECSKTYTK-MVFIKVDVDEVSEVTEKENITSMPTFKV 77 (103)
T ss_dssp CEEECSHHHHHHHHHHCS---EEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEETTTTHHHHHHTTCCSSSEEEE
T ss_pred cEEeCCHHHHHHHHhCCC---cEEEEEeCCcccCcccccccchhhhhcccc-eEEEeeccccCcceeeeeeeecceEEEE
Confidence 467899999999999887 467777543 2478889988864 4555543 23567889999999999999
Q ss_pred ecCCCCCCccccCCCCHHHHHHHHHhhc
Q 020623 100 LQPSYNEHNIFYGPFDEEFLEEFIKQNF 127 (323)
Q Consensus 100 ~k~~~~~~~~y~g~~~~~~L~~fI~~~~ 127 (323)
|+++ +....+.|. +.+.|++||.++.
T Consensus 78 ~k~G-~~v~~~~G~-~~~~l~~~i~k~a 103 (103)
T d1syra_ 78 YKNG-SSVDTLLGA-NDSALKQLIEKYA 103 (103)
T ss_dssp EETT-EEEEEEESC-CHHHHHHHHHTTC
T ss_pred EECC-EEEEEEeCc-CHHHHHHHHHhhC
Confidence 9863 222345674 6889999999874
|
| >d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Escherichia coli [TaxId: 562]
Probab=98.14 E-value=2.5e-05 Score=58.06 Aligned_cols=104 Identities=13% Similarity=0.192 Sum_probs=77.3
Q ss_pred CeeecChhhHHH-hhcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC-eEEEEEcCcchhhHhhhcCCcCCCCCCeE
Q 020623 130 LSVPINQDTLNL-LKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKM 207 (323)
Q Consensus 130 lv~~~t~~~~~~-~~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~-l~F~~vd~~~~~~~~~~~gl~~~~~~P~i 207 (323)
-|.++|.+++.. +...++++++.|... -=..-+.+...+.++|.++.+ +.++.+|.+..+.++..||+ ..+|.+
T Consensus 3 ~v~~lt~~~f~~~v~~~~~~v~v~F~a~-wC~~C~~~~~~~~~~a~~~~~~~~~~~vd~d~~~~l~~~~~v---~~~PT~ 78 (108)
T d2trxa_ 3 KIIHLTDDSFDTDVLKADGAILVDFWAE-WCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGI---RGIPTL 78 (108)
T ss_dssp TEEECCTTTHHHHTTTCSSEEEEEEECT-TCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCTTHHHHTTC---CSSSEE
T ss_pred CceECCHHHHHHHHHhCCCcEEEEEECC-CCCCccccCcHHHHHHHHhhcceeeeeccccchhhHHHHhCC---CcEEEE
Confidence 367899999986 456667777767652 113345677888899999887 99999999988888999999 579999
Q ss_pred EEEeCCcceeeccCCCCCCCCCCHHHHHHHHHHHHc
Q 020623 208 VVWDGNENYLTVIGSESIDEEDQGSQISRFLEGYRE 243 (323)
Q Consensus 208 vI~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~~~~~ 243 (323)
++....++.... .+..+.+.|.+||+..++
T Consensus 79 ~~~~~G~~v~~~------~G~~~~~~l~~~i~~~Ls 108 (108)
T d2trxa_ 79 LLFKNGEVAATK------VGALSKGQLKEFLDANLA 108 (108)
T ss_dssp EEEETTEEEEEE------ESCCCHHHHHHHHHHHHC
T ss_pred EEEECCEEEEEE------eCCCCHHHHHHHHHHhcC
Confidence 988754333222 234688999999998764
|
| >d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Calsequestrin domain: Calsequestrin species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=98.08 E-value=2.3e-05 Score=59.96 Aligned_cols=104 Identities=16% Similarity=0.132 Sum_probs=77.1
Q ss_pred CeeecChhhHHHhhcCCCcEEEEEEeCCCh-h----HHHHHHHHHHHHHHhCCC--eEEEEEcCcchhhHhhhcCCcCCC
Q 020623 130 LSVPINQDTLNLLKDDKRKIVLAIVEDETE-E----KSQKLVTTLKAAASANRE--LVFCYVGIKQFADFADTFEANKKS 202 (323)
Q Consensus 130 lv~~~t~~~~~~~~~~~~~~v~~f~~~~~~-e----~~~~~~~~l~~~A~~~~~--l~F~~vd~~~~~~~~~~~gl~~~~ 202 (323)
.|.++|.+|+..+....+.+++.|+..--. . ....+...+..+|+...+ +.|+-+|+...+.++..+++ .
T Consensus 12 ~V~~L~~~nf~~~l~~~~~~~V~FyapwC~~~~~~~~~~~~~~~~~~~a~~~~~~~v~~a~Vd~~~~~~l~~~~~I---~ 88 (124)
T d1a8ya1 12 RVINVNAKNYKNVFKKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEKDAAVAKKLGL---T 88 (124)
T ss_dssp CCEECCTTTHHHHHHHCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEETTTSHHHHHTTTC---C
T ss_pred ccEECCHHHHHHHHHhCCeEEEEEECCCccchhhhhHHHHHHHHHHHHHHHhccCCeEEEEEEeecccchhhcccc---c
Confidence 478999999999877666666767653111 1 133455677788887654 99999999988889999999 5
Q ss_pred CCCeEEEEeCCcceeeccCCCCCCCCCCHHHHHHHHHHHHc
Q 020623 203 KLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEGYRE 243 (323)
Q Consensus 203 ~~P~ivI~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~~~~~ 243 (323)
..|.+.+....+...+ .+..+.+.|.+|+.+.++
T Consensus 89 ~yPTi~~f~~g~~~~y-------~G~r~~~~l~~fi~~~l~ 122 (124)
T d1a8ya1 89 EEDSIYVFKEDEVIEY-------DGEFSADTLVEFLLDVLE 122 (124)
T ss_dssp STTCEEEEESSSEEEC-------CSCCSHHHHHHHHHHHHS
T ss_pred cCCcEEEeccCccEEe-------eCCCCHHHHHHHHHHhcC
Confidence 7999988876543322 345789999999998865
|
| >d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.06 E-value=1.5e-05 Score=60.49 Aligned_cols=100 Identities=13% Similarity=0.142 Sum_probs=73.8
Q ss_pred CCceecCChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcCc---eeEEeec-ccchhhHhhcCCCCC
Q 020623 27 PDVSILNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKKK---AWFAVAK-DFSEDTMVLYDFDKV 94 (323)
Q Consensus 27 p~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~---~~F~~~~-~~~~~~~~~~~~~~~ 94 (323)
..|..| +.+++++.++.++ +++|-|... .+.|.+++..+... +.|+..+ +...+++.++++...
T Consensus 7 ~~V~~l-~~~~f~~~l~~~k---~vlV~Fya~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~ 82 (120)
T d1meka_ 7 DHVLVL-RKSNFAEALAAHK---YLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGVRGY 82 (120)
T ss_dssp TTEEEC-CTTTHHHHHHHCS---EEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTCCSSHHHHTCCSS
T ss_pred CCeEEc-CHHHHHHHHhcCC---cEEEEEECCCcCCccccchhhhhhcccccccccceeeeccccccchhHHHHhCCccC
Confidence 347777 4689999998887 467777542 34788888887542 5555543 234578889999999
Q ss_pred CeEEEecCCCCC-CccccCCCCHHHHHHHHHhhcCCC
Q 020623 95 PALVALQPSYNE-HNIFYGPFDEEFLEEFIKQNFLPL 130 (323)
Q Consensus 95 p~ivv~k~~~~~-~~~y~g~~~~~~L~~fI~~~~~Pl 130 (323)
|++++|+++... ...|.|+.+.+.|.+||+++.-|.
T Consensus 83 Pt~~~~~~G~~~~~~~~~g~~~~~~l~~fi~~~~~p~ 119 (120)
T d1meka_ 83 PTIKFFRNGDTASPKEYTAGREADDIVNWLKKRTGPA 119 (120)
T ss_dssp SEEEEEESSCSSSCEECCCCSSHHHHHHHHHTTSCCC
T ss_pred CeEEEEECCeEeeeEEecCCCCHHHHHHHHHHhhCCC
Confidence 999999874332 346789999999999999998874
|
| >d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Trypanosoma brucei [TaxId: 5691]
Probab=98.03 E-value=4.4e-05 Score=57.42 Aligned_cols=105 Identities=10% Similarity=0.098 Sum_probs=77.1
Q ss_pred hcCCCeeec-ChhhHHHhhcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCCeEEEEEcCcchhhHhhhcCCcCCCCC
Q 020623 126 NFLPLSVPI-NQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKL 204 (323)
Q Consensus 126 ~~~Plv~~~-t~~~~~~~~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~l~F~~vd~~~~~~~~~~~gl~~~~~~ 204 (323)
...|.+.++ |.+.+..+...+.++++.|... -=..-..+...|.++|++++++.|+.+|.++.+.+++.||+ ...
T Consensus 5 ~~~p~vi~i~s~~~~~~~~~~~~~vvv~F~a~-wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~l~~~~~V---~~~ 80 (113)
T d1r26a_ 5 ARYPSVVDVYSVEQFRNIMSEDILTVAWFTAV-WCGPCKTIERPMEKIAYEFPTVKFAKVDADNNSEIVSKCRV---LQL 80 (113)
T ss_dssp SCCSCCEEECCHHHHHHHHHSSSCEEEEEECT-TCHHHHHTHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTC---CSS
T ss_pred cCCCceEEeCCHHHHHHHHcCCCeEEEEEECC-CCccchhhceeccccccccccccccccccccchhhHHHccc---cCC
Confidence 356777777 5678888887777777666642 11234667789999999999999999999988889999999 589
Q ss_pred CeEEEEeCCcc-eeeccCCCCCCCCCCHHHHHHHHHHHH
Q 020623 205 PKMVVWDGNEN-YLTVIGSESIDEEDQGSQISRFLEGYR 242 (323)
Q Consensus 205 P~ivI~~~~~k-Y~~~~~~~~~~~~~t~~~I~~Fi~~~~ 242 (323)
|.+++....+. ... .| .+++.+.+.|++++
T Consensus 81 Pt~~~~~~G~~v~~~-~G-------~~~~~l~~~l~~~i 111 (113)
T d1r26a_ 81 PTFIIARSGKMLGHV-IG-------ANPGMLRQKLRDII 111 (113)
T ss_dssp SEEEEEETTEEEEEE-ES-------SCHHHHHHHHHHHH
T ss_pred CEEEEEECCEEEEEE-eC-------CCHHHHHHHHHHHh
Confidence 99998875432 222 12 35677777777765
|
| >d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Chlamydomonas reinhardtii [TaxId: 3055]
Probab=97.96 E-value=5.9e-05 Score=56.53 Aligned_cols=102 Identities=10% Similarity=0.199 Sum_probs=73.4
Q ss_pred eeec-ChhhHHHhhc----CCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC-eEEEEEcCcchhhHhhhcCCcCCCCC
Q 020623 131 SVPI-NQDTLNLLKD----DKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKL 204 (323)
Q Consensus 131 v~~~-t~~~~~~~~~----~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~-l~F~~vd~~~~~~~~~~~gl~~~~~~ 204 (323)
|..+ |.+++...+. .++|+++.|... .=..-..+...+.++|+++++ +.|+.+|.+..+.+++.||+ ..+
T Consensus 4 v~~i~t~~~fd~~l~~~~~~~k~vvv~f~a~-wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~d~~~~l~~~~~v---~~~ 79 (112)
T d1ep7a_ 4 VIVIDSKAAWDAQLAKGKEEHKPIVVDFTAT-WCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEAAGI---TAM 79 (112)
T ss_dssp EEEECSHHHHHHHHHHHHHHTCCEEEEEECT-TCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTTHHHHHHHTC---CBS
T ss_pred EEEEeCHHHHHHHHHHHhhcCCeEEEEEEcC-CcCCCcccchhhhhhhhcccceEEEEEeeccccccccccccc---cCC
Confidence 4445 4566655442 457887777653 223446777899999999997 99999999988889999999 589
Q ss_pred CeEEEEeCCcceeeccCCCCCCCCCCHHHHHHHHHHHHc
Q 020623 205 PKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEGYRE 243 (323)
Q Consensus 205 P~ivI~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~~~~~ 243 (323)
|.++++...+.-....| .+.+.|.+||+.+.+
T Consensus 80 Pt~~~~~~G~~v~~~~G-------~~~~~l~~~i~k~~a 111 (112)
T d1ep7a_ 80 PTFHVYKDGVKADDLVG-------ASQDKLKALVAKHAA 111 (112)
T ss_dssp SEEEEEETTEEEEEEES-------CCHHHHHHHHHHHHC
T ss_pred CEEEEEECCEEEEEEeC-------cCHHHHHHHHHHHhC
Confidence 99998875432222222 478999999998864
|
| >d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.93 E-value=3.5e-05 Score=60.04 Aligned_cols=100 Identities=17% Similarity=0.169 Sum_probs=72.0
Q ss_pred CCceecCChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcCc---eeEEeecccchhhHhhcCCCCCC
Q 020623 27 PDVSILNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKKK---AWFAVAKDFSEDTMVLYDFDKVP 95 (323)
Q Consensus 27 p~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~---~~F~~~~~~~~~~~~~~~~~~~p 95 (323)
++|..|+ .+.+++++.+.+. +++|-|... ...|.++|..+.+. +.|+..+ .+.+++.++++.+.|
T Consensus 12 ~~V~~l~-~~nf~~~v~~~~k--~vlV~F~a~wC~~C~~~~p~~~~la~~~~~~~~~v~~~~~d-~~~~~~~~~~v~~~P 87 (140)
T d2b5ea1 12 SSVFQLV-GKNHDEIVNDPKK--DVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLD-HTENDVRGVVIEGYP 87 (140)
T ss_dssp CSEEEEC-TTTHHHHHHCTTC--CEEEEEECTTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEE-GGGCCCSSCCCSSSS
T ss_pred CCcEEec-CcCHHHHHhcCCC--CEEEEEEeccCcccchhHHHHHHHHHHHhccccceEEEeee-ccchhccccccccCC
Confidence 4588885 5888888865443 467776542 24788899887542 3444443 245678889999999
Q ss_pred eEEEecCCCC-CCccccCCCCHHHHHHHHHhhcCCC
Q 020623 96 ALVALQPSYN-EHNIFYGPFDEEFLEEFIKQNFLPL 130 (323)
Q Consensus 96 ~ivv~k~~~~-~~~~y~g~~~~~~L~~fI~~~~~Pl 130 (323)
++++|+++.. +...|.|..+.+.|.+||.++....
T Consensus 88 tl~~f~~g~~~~~~~y~G~~t~~~l~~fi~~~~~~~ 123 (140)
T d2b5ea1 88 TIVLYPGGKKSESVVYQGSRSLDSLFDFIKENGHFD 123 (140)
T ss_dssp EEEEECCTTSCCCCBCCSCCCHHHHHHHHHHHCTTC
T ss_pred eEEEEECCEEcceeEeCCCCCHHHHHHHHHHcCCCC
Confidence 9999987433 3456889999999999999986544
|
| >d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Calsequestrin domain: Calsequestrin species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=97.93 E-value=4.8e-05 Score=58.02 Aligned_cols=96 Identities=13% Similarity=0.149 Sum_probs=70.1
Q ss_pred CceecCChHHHHHHHHhcCCcccEEEEecCC--h------------hHHHHHHHhhcCc-eeEEeecc-cchhhHhhcCC
Q 020623 28 DVSILNSDAEVSDFVENAGTFFPLFIGFGLD--E------------SVMSNLALKYKKK-AWFAVAKD-FSEDTMVLYDF 91 (323)
Q Consensus 28 ~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--~------------~~f~~~A~~~~~~-~~F~~~~~-~~~~~~~~~~~ 91 (323)
.|..|+ .+.++.++++++. ++|-|+.. . ..+..+|+.+.+. +.|+.++. -+.+++.++++
T Consensus 12 ~V~~L~-~~nf~~~l~~~~~---~~V~FyapwC~~~~~~~~~~~~~~~~~~~a~~~~~~~v~~a~Vd~~~~~~l~~~~~I 87 (124)
T d1a8ya1 12 RVINVN-AKNYKNVFKKYEV---LALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEKDAAVAKKLGL 87 (124)
T ss_dssp CCEECC-TTTHHHHHHHCSE---EEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEETTTSHHHHHTTTC
T ss_pred ccEECC-HHHHHHHHHhCCe---EEEEEECCCccchhhhhHHHHHHHHHHHHHHHhccCCeEEEEEEeecccchhhcccc
Confidence 478885 6889999998874 56666432 1 1334556655443 67777753 35678999999
Q ss_pred CCCCeEEEecCCCCCCccccCCCCHHHHHHHHHhhcCC
Q 020623 92 DKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQNFLP 129 (323)
Q Consensus 92 ~~~p~ivv~k~~~~~~~~y~g~~~~~~L~~fI~~~~~P 129 (323)
...|+|.+|++ ++...|.|..+.+.|.+||.+..-|
T Consensus 88 ~~yPTi~~f~~--g~~~~y~G~r~~~~l~~fi~~~l~~ 123 (124)
T d1a8ya1 88 TEEDSIYVFKE--DEVIEYDGEFSADTLVEFLLDVLED 123 (124)
T ss_dssp CSTTCEEEEES--SSEEECCSCCSHHHHHHHHHHHHSC
T ss_pred ccCCcEEEecc--CccEEeeCCCCHHHHHHHHHHhcCC
Confidence 99999999986 4566799999999999999876543
|
| >d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]
Probab=97.90 E-value=0.00015 Score=54.29 Aligned_cols=104 Identities=13% Similarity=0.175 Sum_probs=76.1
Q ss_pred CCCeeecChhhHHHhhcC--CCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCCeEEEEEcCcc-hhhHhhhcCCcCCCCC
Q 020623 128 LPLSVPINQDTLNLLKDD--KRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQ-FADFADTFEANKKSKL 204 (323)
Q Consensus 128 ~Plv~~~t~~~~~~~~~~--~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~l~F~~vd~~~-~~~~~~~~gl~~~~~~ 204 (323)
...+.++|.+++..+... ++|+++.|... .=..-..+...|.++|++++++.|+.+|.+. .+.+++.||+ ..+
T Consensus 5 ~g~v~~~~~d~f~~~l~~~~~k~vvv~f~a~-wC~~C~~~~p~~~~l~~~~~~v~~~~vd~~~~~~~l~~~~~V---~~~ 80 (112)
T d1f9ma_ 5 VGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQ-WCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGI---RVV 80 (112)
T ss_dssp TTSEEEECTTTHHHHHHTCTTSCEEEEEECT-TCHHHHHHHHHHHHHHHHCTTSEEEEEECSSTTHHHHHHHCC---SSS
T ss_pred ceeeEEeCHHHHHHHHHHcCCCEEEEEEEcC-CCcchHHHHHHHhhhccccccceeecccccccchhhHhheee---ccC
Confidence 457889999999987643 46777767653 2233456778899999999998899999964 5778899999 579
Q ss_pred CeEEEEeCCcc-eeeccCCCCCCCCCCHHHHHHHHHHHHc
Q 020623 205 PKMVVWDGNEN-YLTVIGSESIDEEDQGSQISRFLEGYRE 243 (323)
Q Consensus 205 P~ivI~~~~~k-Y~~~~~~~~~~~~~t~~~I~~Fi~~~~~ 243 (323)
|.++++...+. ..+ .| .+.+.+.++|+..++
T Consensus 81 Pt~~~~k~G~~v~~~-~G-------~~~~~l~e~i~~~~~ 112 (112)
T d1f9ma_ 81 PTFKILKENSVVGEV-TG-------AKYDKLLEAIQAARS 112 (112)
T ss_dssp SEEEEEETTEEEEEE-ES-------SCHHHHHHHHHHHHC
T ss_pred CEEEEEECCEEEEEE-eC-------CCHHHHHHHHHHccC
Confidence 99999864332 222 22 466889999988753
|
| >d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Anabaena sp., pcc 7120 [TaxId: 1167]
Probab=97.88 E-value=4.3e-05 Score=56.70 Aligned_cols=96 Identities=21% Similarity=0.253 Sum_probs=70.4
Q ss_pred CCceecCChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeec-ccchhhHhhcCCCCCCeE
Q 020623 27 PDVSILNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAK-DFSEDTMVLYDFDKVPAL 97 (323)
Q Consensus 27 p~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~-~~~~~~~~~~~~~~~p~i 97 (323)
..|..|+ .++++..+.+.+. +++|-|... .+.+.++|..+.+.+.|+..+ +..++++.+|++...|++
T Consensus 2 ~~V~~lt-~~~f~~~v~~~~~--~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~I~~~Pt~ 78 (108)
T d1thxa_ 2 KGVITIT-DAEFESEVLKAEQ--PVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNPTTVKKYKVEGVPAL 78 (108)
T ss_dssp CSEEECC-GGGHHHHTTTCSS--CEEEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEEEEESTTCHHHHHHTTCCSSSEE
T ss_pred CCceECC-HHHHHHHHHhCCC--cEEEEEECCCCCCccccchHHHHHHHhcCCcceeceecccccHHHHHHhcccCCCEE
Confidence 3578885 5788775544332 577777542 247888999998888777664 246788999999999999
Q ss_pred EEecCCCCCCccccCCCCHHHHHHHHHhh
Q 020623 98 VALQPSYNEHNIFYGPFDEEFLEEFIKQN 126 (323)
Q Consensus 98 vv~k~~~~~~~~y~g~~~~~~L~~fI~~~ 126 (323)
++|+++ +....|.|..+.+.|.+||+++
T Consensus 79 ~~~~~g-~~v~~~~G~~~~~~l~~~i~~~ 106 (108)
T d1thxa_ 79 RLVKGE-QILDSTEGVISKDKLLSFLDTH 106 (108)
T ss_dssp EEEETT-EEEEEEESCCCHHHHHHHHHHH
T ss_pred EEEECC-EEEEEEeCCCCHHHHHHHHHHh
Confidence 999852 2233467988999999999876
|
| >d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]
Probab=97.88 E-value=1.8e-05 Score=58.58 Aligned_cols=93 Identities=17% Similarity=0.223 Sum_probs=70.7
Q ss_pred ceecCChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeecc-cchhhHhhcCCCCCCeEEE
Q 020623 29 VSILNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAKD-FSEDTMVLYDFDKVPALVA 99 (323)
Q Consensus 29 v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~~-~~~~~~~~~~~~~~p~ivv 99 (323)
+..|+ .+++++.+++++ +++|-|... ...+.++|.++.+.+.|+..+. ..++++.+|++...|++++
T Consensus 2 ~i~lt-~~~f~~~i~~~k---~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~V~~~Pt~~~ 77 (105)
T d1nw2a_ 2 TMTLT-DANFQQAIQGDK---PVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGIMSIPTLIL 77 (105)
T ss_dssp CEEEC-TTTHHHHTTSSS---CEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTCHHHHHHTTCCBSSEEEE
T ss_pred EEEEC-HHHHHHHHhCCC---cEEEEEECCCCCCcccccchhhhhhhhcCCceEEEEEECCCCcccHHHCCcceeeEEEE
Confidence 45674 578999888776 577877643 2477889999988888877743 3668899999999999999
Q ss_pred ecCCCCCCccccCCCCHHHHHHHHHhh
Q 020623 100 LQPSYNEHNIFYGPFDEEFLEEFIKQN 126 (323)
Q Consensus 100 ~k~~~~~~~~y~g~~~~~~L~~fI~~~ 126 (323)
|+++ +....+.|..+.+.|++||.+.
T Consensus 78 ~~~G-~~~~~~~G~~~~~~l~~~i~~~ 103 (105)
T d1nw2a_ 78 FKGG-EPVKQLIGYQPKEQLEAQLADV 103 (105)
T ss_dssp EETT-EEEEEEESCCCHHHHHHHTTTT
T ss_pred EECC-EEEEEEECCCCHHHHHHHHHHH
Confidence 9853 2233567988999999999764
|
| >d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: ERP29 N domain-like domain: Windbeutel, N-terminal domain species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=97.85 E-value=8.9e-05 Score=56.36 Aligned_cols=97 Identities=14% Similarity=0.149 Sum_probs=70.5
Q ss_pred CCceecCChHHHHHHHHhcCCcccEEEEecCC------hhHHHHHHHhhc---CceeEEeec--c----cchhhHhhcCC
Q 020623 27 PDVSILNSDAEVSDFVENAGTFFPLFIGFGLD------ESVMSNLALKYK---KKAWFAVAK--D----FSEDTMVLYDF 91 (323)
Q Consensus 27 p~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~------~~~f~~~A~~~~---~~~~F~~~~--~----~~~~~~~~~~~ 91 (323)
|.+.+|+ .+.+++++++++ .++|-|+.. .+.|.++|+.+. .++.++.++ + .+.+++.++++
T Consensus 2 ~g~v~L~-~~nFd~~v~~~~---~~lV~Fya~wC~~ck~p~f~kla~~~~~~~~~v~ia~Vd~~~~~~~~n~~l~~~~~i 77 (122)
T d2c0ga2 2 TGCVDLD-ELSFEKTVERFP---YSVVKFDIASPYGEKHEAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGDRYKV 77 (122)
T ss_dssp TTCEECC-TTTHHHHHTTSS---EEEEEEEESSCCSHHHHHHHHHHHHHHHHCSSEEEEEEEECSSTTCTTHHHHHHTTC
T ss_pred CceEEcC-hHhHHHHHhcCC---cEEEEEECCCCCcccCHHHHHHHHHHHHhCCCeEEEeccccccccccCHHHHHHhhc
Confidence 4577885 588999998877 367777531 368888887653 346666552 1 24678888887
Q ss_pred C--CCCeEEEecCCCCC--CccccCCCCHHHHHHHHHhhc
Q 020623 92 D--KVPALVALQPSYNE--HNIFYGPFDEEFLEEFIKQNF 127 (323)
Q Consensus 92 ~--~~p~ivv~k~~~~~--~~~y~g~~~~~~L~~fI~~~~ 127 (323)
. +.|++++|+++... ...|.|+.+.++|.+||++|.
T Consensus 78 ~~~~~PTi~~f~~g~~~~~~~~~~g~rt~~~l~~fv~~~~ 117 (122)
T d2c0ga2 78 DDKNFPSIFLFKGNADEYVQLPSHVDVTLDNLKAFVSANT 117 (122)
T ss_dssp CTTSCCEEEEESSSSSSEEECCTTSCCCHHHHHHHHHHHS
T ss_pred ccCCCCcEEEEeCCcccccccccCCCCCHHHHHHHHHHhc
Confidence 4 69999999975333 335779999999999999986
|
| >d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]
Probab=97.84 E-value=3.4e-05 Score=56.87 Aligned_cols=94 Identities=18% Similarity=0.308 Sum_probs=69.5
Q ss_pred ceecCChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEee-cccchhhHhhcCCCCCCeEEE
Q 020623 29 VSILNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVA-KDFSEDTMVLYDFDKVPALVA 99 (323)
Q Consensus 29 v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~-~~~~~~~~~~~~~~~~p~ivv 99 (323)
|.+|++ +++++.+.+++. +++|-|... ...+.+++.++.+...+..+ .+.+++++.++++...|++++
T Consensus 1 v~el~d-~~f~~~v~~~~~--~vlv~F~a~wC~~C~~~~~~~~~l~~~~~~~~~~~~v~~d~~~~l~~~~~V~~~Pt~~~ 77 (104)
T d1fb6a_ 1 VQDVND-SSWKEFVLESEV--PVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSIPTVLF 77 (104)
T ss_dssp CEECCT-TTHHHHTTTCSS--CEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSSEEEE
T ss_pred CeECch-hhHHHHHHcCCC--cEEEEEEcCccCCccccCchhHHHHHhhcCccceeEEecccchhhhhhcceeeeeEEEE
Confidence 467854 778887766664 678877543 24678899998877666544 334678899999999999999
Q ss_pred ecCCCCCCccccCCCCHHHHHHHHHhh
Q 020623 100 LQPSYNEHNIFYGPFDEEFLEEFIKQN 126 (323)
Q Consensus 100 ~k~~~~~~~~y~g~~~~~~L~~fI~~~ 126 (323)
|+++ +....+.|..+.+.|.+||.++
T Consensus 78 ~~~G-~~v~~~~G~~~~~~l~~~i~~~ 103 (104)
T d1fb6a_ 78 FKNG-ERKESIIGAVPKSTLTDSIEKY 103 (104)
T ss_dssp EETT-EEEEEEEECCCHHHHHHHHHHH
T ss_pred EEcC-eEEEEEeCCCCHHHHHHHHHHh
Confidence 9852 2233467888999999999875
|
| >d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=97.83 E-value=8.6e-05 Score=54.57 Aligned_cols=96 Identities=11% Similarity=0.325 Sum_probs=70.4
Q ss_pred ChhhHHHhhcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCCeEEEEEcCcchhhHhhhcCCcCCCCCCeEEEEeCCc
Q 020623 135 NQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNE 214 (323)
Q Consensus 135 t~~~~~~~~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI~~~~~ 214 (323)
|.+.+..+..+++++++.|... .=..-+.+...+.++|+++++..|+.+|.+..+.+++.|++ ...|.++++...+
T Consensus 7 s~~~f~~~i~~~~~vvv~F~a~-wC~~C~~~~~~~~~l~~~~~~~~~~~vd~d~~~~~~~~~~V---~~~Pt~i~~k~G~ 82 (103)
T d1syra_ 7 SQAEFDSIISQNELVIVDFFAE-WCGPCKRIAPFYEECSKTYTKMVFIKVDVDEVSEVTEKENI---TSMPTFKVYKNGS 82 (103)
T ss_dssp SHHHHHHHHHHCSEEEEEEECT-TCHHHHHHHHHHHHHHHHCTTSEEEEEETTTTHHHHHHTTC---CSSSEEEEEETTE
T ss_pred CHHHHHHHHhCCCcEEEEEeCC-cccCcccccccchhhhhcccceEEEeeccccCcceeeeeee---ecceEEEEEECCE
Confidence 4566777766667777767653 22344677789999999999988999999988889999999 6899999887543
Q ss_pred ceeeccCCCCCCCCCCHHHHHHHHHHH
Q 020623 215 NYLTVIGSESIDEEDQGSQISRFLEGY 241 (323)
Q Consensus 215 kY~~~~~~~~~~~~~t~~~I~~Fi~~~ 241 (323)
.-....| .+.+.|.+||+.+
T Consensus 83 ~v~~~~G-------~~~~~l~~~i~k~ 102 (103)
T d1syra_ 83 SVDTLLG-------ANDSALKQLIEKY 102 (103)
T ss_dssp EEEEEES-------CCHHHHHHHHHTT
T ss_pred EEEEEeC-------cCHHHHHHHHHhh
Confidence 2212222 3578899999864
|
| >d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Chlamydomonas reinhardtii [TaxId: 3055]
Probab=97.82 E-value=6.6e-05 Score=56.24 Aligned_cols=97 Identities=13% Similarity=0.246 Sum_probs=71.2
Q ss_pred CCCceecCChHHHHHHHHh----cCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeec-ccchhhHhhcCCC
Q 020623 26 APDVSILNSDAEVSDFVEN----AGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAK-DFSEDTMVLYDFD 92 (323)
Q Consensus 26 ~p~v~~i~s~~~l~~fl~~----~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~-~~~~~~~~~~~~~ 92 (323)
|..|..|+|.+++++.+.. +. +++|-|+.+ .+.+.++|.++.+++.|..++ +-.++++.++++.
T Consensus 1 gg~v~~i~t~~~fd~~l~~~~~~~k---~vvv~f~a~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~d~~~~l~~~~~v~ 77 (112)
T d1ep7a_ 1 GGSVIVIDSKAAWDAQLAKGKEEHK---PIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEAAGIT 77 (112)
T ss_dssp CCSEEEECSHHHHHHHHHHHHHHTC---CEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTTHHHHHHHTCC
T ss_pred CCCEEEEeCHHHHHHHHHHHhhcCC---eEEEEEEcCCcCCCcccchhhhhhhhcccceEEEEEeecccccccccccccc
Confidence 4568889999888876643 33 578877643 257889999998777776653 2357888999999
Q ss_pred CCCeEEEecCCCCCCccccCCCCHHHHHHHHHhhc
Q 020623 93 KVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQNF 127 (323)
Q Consensus 93 ~~p~ivv~k~~~~~~~~y~g~~~~~~L~~fI~~~~ 127 (323)
..|++++|+++ +....+.|. +.++|++||.++.
T Consensus 78 ~~Pt~~~~~~G-~~v~~~~G~-~~~~l~~~i~k~~ 110 (112)
T d1ep7a_ 78 AMPTFHVYKDG-VKADDLVGA-SQDKLKALVAKHA 110 (112)
T ss_dssp BSSEEEEEETT-EEEEEEESC-CHHHHHHHHHHHH
T ss_pred CCCEEEEEECC-EEEEEEeCc-CHHHHHHHHHHHh
Confidence 99999999853 222234574 7899999998874
|
| >d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Chlamydomonas reinhardtii [TaxId: 3055]
Probab=97.80 E-value=9.5e-05 Score=54.64 Aligned_cols=95 Identities=15% Similarity=0.297 Sum_probs=70.8
Q ss_pred ceecCChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeec-ccchhhHhhcCCCCCCeEEE
Q 020623 29 VSILNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAK-DFSEDTMVLYDFDKVPALVA 99 (323)
Q Consensus 29 v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~-~~~~~~~~~~~~~~~p~ivv 99 (323)
+..| |.+.+++.+.+++. +++|-|... .+.+.+++..+.+++.|+.++ +..++++.++++...|++++
T Consensus 3 ~~~i-~~~~f~~~v~~s~k--pvlv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~V~~~Pt~~~ 79 (107)
T d1dbya_ 3 AGAV-NDDTFKNVVLESSV--PVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNVASEYGIRSIPTIMV 79 (107)
T ss_dssp CEEE-CHHHHHHHTTTCSS--CEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHHTCCSSCEEEE
T ss_pred ceEe-cHHHHHHHHHhCCC--cEEEEEECCCCCCccccChHHHHHHHhhcccceEEEEecccchhHHHHhcccceEEEEE
Confidence 5567 46889887766654 678877653 246778888888888777663 24678899999999999999
Q ss_pred ecCCCCCCccccCCCCHHHHHHHHHhhc
Q 020623 100 LQPSYNEHNIFYGPFDEEFLEEFIKQNF 127 (323)
Q Consensus 100 ~k~~~~~~~~y~g~~~~~~L~~fI~~~~ 127 (323)
|+++ +....+.|..+.+.|.+||+++.
T Consensus 80 ~~~G-~~v~~~~G~~~~~~l~~~i~~~L 106 (107)
T d1dbya_ 80 FKGG-KKCETIIGAVPKATIVQTVEKYL 106 (107)
T ss_dssp ESSS-SEEEEEESCCCHHHHHHHHHHHC
T ss_pred EECC-eEEEEEeCCCCHHHHHHHHHHhh
Confidence 9852 22234668889999999998763
|
| >d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin-like protein, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.77 E-value=0.0001 Score=54.72 Aligned_cols=96 Identities=22% Similarity=0.294 Sum_probs=69.3
Q ss_pred CceecCChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeec-ccchhhHhhcCCCCCCeEE
Q 020623 28 DVSILNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAK-DFSEDTMVLYDFDKVPALV 98 (323)
Q Consensus 28 ~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~-~~~~~~~~~~~~~~~p~iv 98 (323)
+|+.|.|.+++++++..++.. +++|-|... .+.|.++|.++.+ +.|..++ +-.++++.++++...|+++
T Consensus 2 ~v~~i~s~~~f~~~l~~~~~k-lvvv~F~a~wC~~Ck~~~p~~~~la~~~~~-~~f~~vd~d~~~~l~~~~~v~~~Pt~~ 79 (107)
T d1gh2a_ 2 GVKPVGSDPDFQPELSGAGSR-LAVVKFTMRGCGPCLRIAPAFSSMSNKYPQ-AVFLEVDVHQCQGTAATNNISATPTFQ 79 (107)
T ss_dssp CEEEECSGGGHHHHHHHTTTS-CEEEEEECSSCHHHHHHHHHHHHHHHHCTT-SEEEEEETTTSHHHHHHTTCCSSSEEE
T ss_pred ceEEcCCHHHHHHHHHhCCCC-EEEEEEECCCCCCccccchhhhcccccccc-ccccccccccchhhhhhcCceeceEEE
Confidence 578899999999988764321 467766542 2478899998874 5565442 2467888999999999999
Q ss_pred EecCCCCCCccccCCCCHHHHHHHHHhhc
Q 020623 99 ALQPSYNEHNIFYGPFDEEFLEEFIKQNF 127 (323)
Q Consensus 99 v~k~~~~~~~~y~g~~~~~~L~~fI~~~~ 127 (323)
+|+++ ..-..+.|. +.+.|++||+++.
T Consensus 80 ~~~~G-~~v~~~~G~-~~~~l~~~i~k~l 106 (107)
T d1gh2a_ 80 FFRNK-VRIDQYQGA-DAVGLEEKIKQHL 106 (107)
T ss_dssp EEETT-EEEEEEESS-CHHHHHHHHHHHH
T ss_pred EEECC-EEEEEEeCC-CHHHHHHHHHHhh
Confidence 99863 222245674 7899999998863
|
| >d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.77 E-value=0.0001 Score=54.38 Aligned_cols=93 Identities=19% Similarity=0.302 Sum_probs=66.7
Q ss_pred ceecCChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEee-cccchhhHhhcCCCCCCeEEE
Q 020623 29 VSILNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVA-KDFSEDTMVLYDFDKVPALVA 99 (323)
Q Consensus 29 v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~-~~~~~~~~~~~~~~~~p~ivv 99 (323)
|..|+|.++++++++..+-. +++|-|... .+.+.++++.+.+. .|... -+..++++.++++...|++++
T Consensus 2 v~~i~s~~~f~~~l~~~~~k-~vvv~F~a~wC~~C~~~~p~~~~l~~~~~~~-~~~~vd~d~~~~~~~~~~V~~~Pt~~~ 79 (105)
T d2ifqa1 2 VKQIESKTAFQEALDAAGDK-LVVVDFSATWCGPCKMIKPFFHSLSEKYSNV-IFLEVDVDDCQDVASECEVKCMPTFQF 79 (105)
T ss_dssp CEEECSHHHHHHHHHHTTTS-CEEEEEECTTCHHHHHHHHHHHHHHHHCTTS-EEEEEETTTCHHHHHHTTCCBSSEEEE
T ss_pred eEEcCCHHHHHHHHHhCCCC-EEEEEEEcCCccchhhhhhhhhhhccccccc-eeeecccccCHhHHHHcCceEEEEEEE
Confidence 57899999999999764321 577777643 24778888888654 45444 234678899999999999999
Q ss_pred ecCCCCCCccccCCCCHHHHHHHHHh
Q 020623 100 LQPSYNEHNIFYGPFDEEFLEEFIKQ 125 (323)
Q Consensus 100 ~k~~~~~~~~y~g~~~~~~L~~fI~~ 125 (323)
|+++ +....+.|. +.+.|++||++
T Consensus 80 ~~~G-~~v~~~~G~-~~~~l~~~i~~ 103 (105)
T d2ifqa1 80 FKKG-QKVGEFSGA-NKEKLEATINE 103 (105)
T ss_dssp EETT-EEEEEEESC-CHHHHHHHHHH
T ss_pred EECC-EEEEEEeCC-CHHHHHHHHHh
Confidence 9863 222345674 78899999975
|
| >d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=97.74 E-value=0.00014 Score=54.10 Aligned_cols=96 Identities=20% Similarity=0.286 Sum_probs=69.5
Q ss_pred CceecCChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeec-ccchhhHhhcCCCCCCeEE
Q 020623 28 DVSILNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAK-DFSEDTMVLYDFDKVPALV 98 (323)
Q Consensus 28 ~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~-~~~~~~~~~~~~~~~p~iv 98 (323)
.|..|.|.++++..+...... +++|-|... .+.|.+++.++.+.+.+...+ +-..+++.++++...|+++
T Consensus 6 ~v~~i~~~~~~~~~l~~~~~k-~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~i~~d~~~~l~~~~~V~~~Pt~~ 84 (111)
T d1xwaa_ 6 MVYQVKDKADLDGQLTKASGK-LVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDIAMEYNISSMPTFV 84 (111)
T ss_dssp CEEECCSHHHHHHHHHHHTTS-EEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCHHHHHHTTCCSSSEEE
T ss_pred eEEEECCHHHHHHHHHhcCCC-EEEEEEECCcccCccccchhHHHHhhhcccceEEEEEEeecCcchhhcCCCccccEEE
Confidence 467899999999877654321 577777543 257889999998877665542 2356788899999999999
Q ss_pred EecCCCCCCccccCCCCHHHHHHHHHhh
Q 020623 99 ALQPSYNEHNIFYGPFDEEFLEEFIKQN 126 (323)
Q Consensus 99 v~k~~~~~~~~y~g~~~~~~L~~fI~~~ 126 (323)
+|+++ +....+.|. +.+.|++||++|
T Consensus 85 ~~~~G-~~v~~~~G~-~~~~l~~~I~~~ 110 (111)
T d1xwaa_ 85 FLKNG-VKVEEFAGA-NAKRLEDVIKAN 110 (111)
T ss_dssp EEETT-EEEEEEESC-CHHHHHHHHHHT
T ss_pred EEECC-EEEEEEeCC-CHHHHHHHHHhc
Confidence 99853 222345575 567899999987
|
| >d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: ERP29 N domain-like domain: Endoplasmic reticulum protein ERP29, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.72 E-value=6.5e-05 Score=57.16 Aligned_cols=96 Identities=10% Similarity=0.134 Sum_probs=67.9
Q ss_pred CceecCChHHHHHHHHhcCCcccEEEEecC------ChhHHHHHHHhhcCce--eEEee-----cc-cchhhHhhcC--C
Q 020623 28 DVSILNSDAEVSDFVENAGTFFPLFIGFGL------DESVMSNLALKYKKKA--WFAVA-----KD-FSEDTMVLYD--F 91 (323)
Q Consensus 28 ~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~------~~~~f~~~A~~~~~~~--~F~~~-----~~-~~~~~~~~~~--~ 91 (323)
.+..|+ .+.+++++.+++ .++|-|+. ....++++|..+.+.. ..+.+ +. .+.+++.+++ +
T Consensus 5 ~~v~L~-~~nFd~~i~~~~---~~lV~F~~~wc~~~~~~~~~~la~~~~~~~~~~~~~V~~~~vd~~~n~~l~~~~~~~I 80 (122)
T d1g7ea_ 5 GALPLD-TVTFYKVIPKSK---FVLVKFDTQYPYGEKQDEFKRLAENSASSDDLLVAEVGISDYGDKLNMELSEKYKLDK 80 (122)
T ss_dssp SSCSCS-HHHHHHHGGGSS---EEEEEEECSSCCTTTTHHHHHHHHHGGGCSSEEEEEEESCCTTSCHHHHHHHHHTCSS
T ss_pred ceEECC-HHhHHHHHhhCC---eEEEEEecCCcCcccCHHHHHHHHHHHHHHHHhhhccceeeccccccHHHHHhhcccc
Confidence 467784 699999998887 46787743 1358899999886532 22211 11 1455666654 5
Q ss_pred CCCCeEEEecCCCC-CCccccCCCCHHHHHHHHHhhc
Q 020623 92 DKVPALVALQPSYN-EHNIFYGPFDEEFLEEFIKQNF 127 (323)
Q Consensus 92 ~~~p~ivv~k~~~~-~~~~y~g~~~~~~L~~fI~~~~ 127 (323)
.+.|+|.+|+++.. +...|.|+.+.++|.+||+++.
T Consensus 81 ~~yPTi~~f~~G~~~~~~~y~G~rt~~~l~~fi~~~~ 117 (122)
T d1g7ea_ 81 ESYPVFYLFRDGDFENPVPYSGAVKVGAIQRWLKGQG 117 (122)
T ss_dssp SSCEEEEEEESSCCCCCEEEESCCCHHHHHHHHHTTS
T ss_pred cCCCeEEEEecCcccCceecCCCCCHHHHHHHHHhcc
Confidence 57999999997533 3457899999999999999985
|
| >d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Trypanosoma brucei [TaxId: 5691]
Probab=97.72 E-value=0.00012 Score=54.92 Aligned_cols=94 Identities=14% Similarity=0.175 Sum_probs=67.3
Q ss_pred cCCCceecCChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeec-ccchhhHhhcCCCCCC
Q 020623 25 VAPDVSILNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAK-DFSEDTMVLYDFDKVP 95 (323)
Q Consensus 25 ~~p~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~-~~~~~~~~~~~~~~~p 95 (323)
..|.+..+.|.++++++++++. +++|-|..+ .+.|.++|.++. ++.|+.++ +-.++++.+|++.+.|
T Consensus 6 ~~p~vi~i~s~~~~~~~~~~~~---~vvv~F~a~wC~~C~~~~p~l~~l~~~~~-~v~~~~vd~d~~~~l~~~~~V~~~P 81 (113)
T d1r26a_ 6 RYPSVVDVYSVEQFRNIMSEDI---LTVAWFTAVWCGPCKTIERPMEKIAYEFP-TVKFAKVDADNNSEIVSKCRVLQLP 81 (113)
T ss_dssp CCSCCEEECCHHHHHHHHHSSS---CEEEEEECTTCHHHHHTHHHHHHHHHHCT-TSEEEEEETTTCHHHHHHTTCCSSS
T ss_pred CCCceEEeCCHHHHHHHHcCCC---eEEEEEECCCCccchhhceeccccccccc-cccccccccccchhhHHHccccCCC
Confidence 4678999999999999998887 467777643 247889999885 66676663 2467789999999999
Q ss_pred eEEEecCCCCCCccccCCCCHHHHHHHHH
Q 020623 96 ALVALQPSYNEHNIFYGPFDEEFLEEFIK 124 (323)
Q Consensus 96 ~ivv~k~~~~~~~~y~g~~~~~~L~~fI~ 124 (323)
++++|+++ +.-..+.|. +.+.|.++|.
T Consensus 82 t~~~~~~G-~~v~~~~G~-~~~~l~~~l~ 108 (113)
T d1r26a_ 82 TFIIARSG-KMLGHVIGA-NPGMLRQKLR 108 (113)
T ss_dssp EEEEEETT-EEEEEEESS-CHHHHHHHHH
T ss_pred EEEEEECC-EEEEEEeCC-CHHHHHHHHH
Confidence 99999863 122234563 4455555554
|
| >d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Escherichia coli [TaxId: 562]
Probab=97.68 E-value=0.00011 Score=54.27 Aligned_cols=95 Identities=20% Similarity=0.308 Sum_probs=68.8
Q ss_pred CceecCChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeec-ccchhhHhhcCCCCCCeEE
Q 020623 28 DVSILNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAK-DFSEDTMVLYDFDKVPALV 98 (323)
Q Consensus 28 ~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~-~~~~~~~~~~~~~~~p~iv 98 (323)
.|..|+ .+++++.+.+++. +++|-|... ...+.++|..+..++.+...+ +-+++++.+|++.+.|+++
T Consensus 3 ~v~~lt-~~~f~~~v~~~~~--~v~v~F~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~vd~d~~~~l~~~~~v~~~PT~~ 79 (108)
T d2trxa_ 3 KIIHLT-DDSFDTDVLKADG--AILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLL 79 (108)
T ss_dssp TEEECC-TTTHHHHTTTCSS--EEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCTTHHHHTTCCSSSEEE
T ss_pred CceECC-HHHHHHHHHhCCC--cEEEEEECCCCCCccccCcHHHHHHHHhhcceeeeeccccchhhHHHHhCCCcEEEEE
Confidence 467785 4778765433333 578877643 246778898888787776653 2467788999999999999
Q ss_pred EecCCCCCCccccCCCCHHHHHHHHHhh
Q 020623 99 ALQPSYNEHNIFYGPFDEEFLEEFIKQN 126 (323)
Q Consensus 99 v~k~~~~~~~~y~g~~~~~~L~~fI~~~ 126 (323)
+|+++ +....|.|..+.+.|.+||.++
T Consensus 80 ~~~~G-~~v~~~~G~~~~~~l~~~i~~~ 106 (108)
T d2trxa_ 80 LFKNG-EVAATKVGALSKGQLKEFLDAN 106 (108)
T ss_dssp EEETT-EEEEEEESCCCHHHHHHHHHHH
T ss_pred EEECC-EEEEEEeCCCCHHHHHHHHHHh
Confidence 99853 2233467998999999999876
|
| >d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.66 E-value=0.00051 Score=51.27 Aligned_cols=98 Identities=11% Similarity=0.157 Sum_probs=70.1
Q ss_pred ChhhHHHhh----cCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCCeEEEEEcCcchhhHhhhcCCcCCCCCCeEEEE
Q 020623 135 NQDTLNLLK----DDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVW 210 (323)
Q Consensus 135 t~~~~~~~~----~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI~ 210 (323)
|.+++...+ ..++++++-|... -=..-+.+...|.++++.++++.|+.+|.++.+.+++.||+ ..+|.++++
T Consensus 13 s~~~~~~~~~~~~~~~~~vlv~F~a~-wC~~C~~~~p~~~~l~~~~~~~~~~~vd~~~~~~l~~~~~V---~~~Pt~~~~ 88 (114)
T d1xfla_ 13 TVETWNEQLQKANESKTLVVVDFTAS-WCGPCRFIAPFFADLAKKLPNVLFLKVDTDELKSVASDWAI---QAMPTFMFL 88 (114)
T ss_dssp SHHHHHHHHHHHHHTTCEEEEEEECT-TCHHHHHHHHHHHHHHHHCSSEEEEEEETTTSHHHHHHTTC---CSSSEEEEE
T ss_pred CHHHHHHHHHHhhccCCeEEEEEEcC-CCCCccccccchhhhcccccccceeEEEeeeceeeccccce---eeeEEEEEE
Confidence 555565433 3456776667652 11334677788999999999999999999998899999999 579999888
Q ss_pred eCCcceeeccCCCCCCCCCCHHHHHHHHHHHHc
Q 020623 211 DGNENYLTVIGSESIDEEDQGSQISRFLEGYRE 243 (323)
Q Consensus 211 ~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~~~~~ 243 (323)
...++-....| .+.+.|.+||+.+++
T Consensus 89 ~~G~~v~~~~G-------~~~~~l~~~i~k~la 114 (114)
T d1xfla_ 89 KEGKILDKVVG-------AKKDELQSTIAKHLA 114 (114)
T ss_dssp ETTEEEEEEES-------CCHHHHHHHHHHHCC
T ss_pred ECCEEEEEEeC-------cCHHHHHHHHHHhhC
Confidence 64432222222 468999999998864
|
| >d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.65 E-value=0.00051 Score=50.42 Aligned_cols=101 Identities=10% Similarity=0.163 Sum_probs=71.0
Q ss_pred eeec-ChhhHHHhhc-C-CCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCCeEEEEEcCcchhhHhhhcCCcCCCCCCeE
Q 020623 131 SVPI-NQDTLNLLKD-D-KRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKM 207 (323)
Q Consensus 131 v~~~-t~~~~~~~~~-~-~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~l~F~~vd~~~~~~~~~~~gl~~~~~~P~i 207 (323)
|.++ |.+.+..... . ++++++-|... -=..-..+...|.++++.++++.|+.+|.+..+.++..+|+ ...|.+
T Consensus 2 v~~i~s~~~f~~~l~~~~~k~vvv~F~a~-wC~~C~~~~p~~~~l~~~~~~~~~~~vd~d~~~~~~~~~~V---~~~Pt~ 77 (105)
T d2ifqa1 2 VKQIESKTAFQEALDAAGDKLVVVDFSAT-WCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEV---KCMPTF 77 (105)
T ss_dssp CEEECSHHHHHHHHHHTTTSCEEEEEECT-TCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTC---CBSSEE
T ss_pred eEEcCCHHHHHHHHHhCCCCEEEEEEEcC-CccchhhhhhhhhhhccccccceeeecccccCHhHHHHcCc---eEEEEE
Confidence 3445 3456666553 2 45676667653 12345677788999999999888999999998899999999 579999
Q ss_pred EEEeCCcceeeccCCCCCCCCCCHHHHHHHHHHHH
Q 020623 208 VVWDGNENYLTVIGSESIDEEDQGSQISRFLEGYR 242 (323)
Q Consensus 208 vI~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~~~~ 242 (323)
+++...+.-....| .+.+.|.+||++++
T Consensus 78 ~~~~~G~~v~~~~G-------~~~~~l~~~i~~~l 105 (105)
T d2ifqa1 78 QFFKKGQKVGEFSG-------ANKEKLEATINELV 105 (105)
T ss_dssp EEEETTEEEEEEES-------CCHHHHHHHHHHHC
T ss_pred EEEECCEEEEEEeC-------CCHHHHHHHHHhhC
Confidence 98864432212222 46789999999874
|
| >d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin-like protein, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.64 E-value=0.00045 Score=51.10 Aligned_cols=97 Identities=12% Similarity=0.104 Sum_probs=70.0
Q ss_pred ChhhHHHhhc-C-CCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCCeEEEEEcCcchhhHhhhcCCcCCCCCCeEEEEeC
Q 020623 135 NQDTLNLLKD-D-KRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDG 212 (323)
Q Consensus 135 t~~~~~~~~~-~-~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI~~~ 212 (323)
|.+.+...+. . ++++++-|... --..-+.+...|.++|++++++.|+.+|.+..+.+++.||+ ..+|.+++...
T Consensus 8 s~~~f~~~l~~~~~klvvv~F~a~-wC~~Ck~~~p~~~~la~~~~~~~f~~vd~d~~~~l~~~~~v---~~~Pt~~~~~~ 83 (107)
T d1gh2a_ 8 SDPDFQPELSGAGSRLAVVKFTMR-GCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQCQGTAATNNI---SATPTFQFFRN 83 (107)
T ss_dssp SGGGHHHHHHHTTTSCEEEEEECS-SCHHHHHHHHHHHHHHHHCTTSEEEEEETTTSHHHHHHTTC---CSSSEEEEEET
T ss_pred CHHHHHHHHHhCCCCEEEEEEECC-CCCCccccchhhhccccccccccccccccccchhhhhhcCc---eeceEEEEEEC
Confidence 4566665543 2 45666656653 22345678889999999999999999999988889999999 57999998865
Q ss_pred Ccc-eeeccCCCCCCCCCCHHHHHHHHHHHHc
Q 020623 213 NEN-YLTVIGSESIDEEDQGSQISRFLEGYRE 243 (323)
Q Consensus 213 ~~k-Y~~~~~~~~~~~~~t~~~I~~Fi~~~~~ 243 (323)
.++ ... .| .+.+.|.++|++++.
T Consensus 84 G~~v~~~-~G-------~~~~~l~~~i~k~le 107 (107)
T d1gh2a_ 84 KVRIDQY-QG-------ADAVGLEEKIKQHLE 107 (107)
T ss_dssp TEEEEEE-ES-------SCHHHHHHHHHHHHC
T ss_pred CEEEEEE-eC-------CCHHHHHHHHHHhhC
Confidence 432 222 12 468899999998863
|
| >d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.56 E-value=6.8e-05 Score=56.61 Aligned_cols=103 Identities=9% Similarity=0.141 Sum_probs=73.2
Q ss_pred CCeeecChhhHHHhhcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC----eEEEEEcCcchhhHhhhcCCcCCCCC
Q 020623 129 PLSVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE----LVFCYVGIKQFADFADTFEANKKSKL 204 (323)
Q Consensus 129 Plv~~~t~~~~~~~~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~----l~F~~vd~~~~~~~~~~~gl~~~~~~ 204 (323)
..|..+|.+++..+...++++++.|...- =..-+.+...+.++++.+++ +.|+.+|++.++.++..|++ ..+
T Consensus 7 ~~V~~l~~~~f~~~l~~~k~vlV~Fya~w-C~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i---~~~ 82 (120)
T d1meka_ 7 DHVLVLRKSNFAEALAAHKYLLVEFYAPW-CGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGV---RGY 82 (120)
T ss_dssp TTEEECCTTTHHHHHHHCSEEEEEEECSS-CSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTCCSSHHHHTC---CSS
T ss_pred CCeEEcCHHHHHHHHhcCCcEEEEEECCC-cCCccccchhhhhhcccccccccceeeeccccccchhHHHHhCC---ccC
Confidence 35788999999998777777777776531 11123455677778887642 89999999988888889999 579
Q ss_pred CeEEEEeCCc--ceeeccCCCCCCCCCCHHHHHHHHHHH
Q 020623 205 PKMVVWDGNE--NYLTVIGSESIDEEDQGSQISRFLEGY 241 (323)
Q Consensus 205 P~ivI~~~~~--kY~~~~~~~~~~~~~t~~~I~~Fi~~~ 241 (323)
|.++++...+ ..... .+..+.++|.+||++.
T Consensus 83 Pt~~~~~~G~~~~~~~~------~g~~~~~~l~~fi~~~ 115 (120)
T d1meka_ 83 PTIKFFRNGDTASPKEY------TAGREADDIVNWLKKR 115 (120)
T ss_dssp SEEEEEESSCSSSCEEC------CCCSSHHHHHHHHHTT
T ss_pred CeEEEEECCeEeeeEEe------cCCCCHHHHHHHHHHh
Confidence 9998876532 11111 2357889999999864
|
| >d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Fungi (Humicola insolens) [TaxId: 34413]
Probab=97.55 E-value=7.2e-05 Score=56.00 Aligned_cols=98 Identities=17% Similarity=0.196 Sum_probs=65.1
Q ss_pred CCceecCChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcCcee---EEeecccchhhHhhcCCCCCC
Q 020623 27 PDVSILNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKKKAW---FAVAKDFSEDTMVLYDFDKVP 95 (323)
Q Consensus 27 p~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~---F~~~~~~~~~~~~~~~~~~~p 95 (323)
.+|+.|+ .+.+++++.+++. +++|-|... .+.|.++|..+..... +.+..........++++.+.|
T Consensus 2 g~V~~lt-~~nF~~~v~~~~k--~vlV~fya~wC~~Ck~~~p~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P 78 (116)
T d2djja1 2 GPVTVVV-AKNYNEIVLDDTK--DVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATANDVPDEIQGFP 78 (116)
T ss_dssp CSSEECC-TTTTTTSSSCTTS--CEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTTSCCSSCCSSSS
T ss_pred cCcEEcc-cCCHHHHHhcCCC--CEEEEEEecccccccccchHHHHHHHHHhcccccceeEEEecccchhhhcccccCCC
Confidence 4678885 5888876643332 567777542 3578899998865422 122211123344567888999
Q ss_pred eEEEecCCCC-CCccccCCCCHHHHHHHHHhhc
Q 020623 96 ALVALQPSYN-EHNIFYGPFDEEFLEEFIKQNF 127 (323)
Q Consensus 96 ~ivv~k~~~~-~~~~y~g~~~~~~L~~fI~~~~ 127 (323)
+|++|+++.. +...|.|..+.++|.+||.+|.
T Consensus 79 ti~~f~~g~~~~~~~~~g~~~~~~l~~fi~~~~ 111 (116)
T d2djja1 79 TIKLYPAGAKGQPVTYSGSRTVEDLIKFIAENG 111 (116)
T ss_dssp EEEEECSSCTTSCCCCCCCSCHHHHHHHHHHTS
T ss_pred EEEEEECCccCceEEecCCCCHHHHHHHHHHcc
Confidence 9999987433 3446889999999999999875
|
| >d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]
Probab=97.47 E-value=0.00066 Score=50.49 Aligned_cols=91 Identities=10% Similarity=0.183 Sum_probs=65.8
Q ss_pred HhhcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCCeEEEEEcCcchhhHhhhcCCcCCCCCCeEEEEeCCcceeecc
Q 020623 141 LLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYLTVI 220 (323)
Q Consensus 141 ~~~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI~~~~~kY~~~~ 220 (323)
.....++++++-|... -=..-+.+...|.++++++.++.|+.+|.+..+.++..|++ ..+|.++++...+.-....
T Consensus 21 ~~~~~~k~vvv~F~a~-wC~~C~~~~p~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~I---~~~Pt~~~~k~G~~v~~~~ 96 (113)
T d1ti3a_ 21 KGKGSQKLIVVDFTAS-WCPPCKMIAPIFAELAKKFPNVTFLKVDVDELKAVAEEWNV---EAMPTFIFLKDGKLVDKTV 96 (113)
T ss_dssp HHTTSSSEEEEEEECS-SCHHHHHHHHHHHHHHHHCSSEEEEEEETTTCHHHHHHHHC---SSTTEEEEEETTEEEEEEE
T ss_pred HHHcCCCEEEEEEEcC-ccccchhhhhhhhhhhccCCCceEEeeeeeccccccccCee---cccceEEEEECCEEEEEEc
Confidence 3344567777767652 12334677789999999998899999999988889999999 5789999987433222212
Q ss_pred CCCCCCCCCCHHHHHHHHHHHH
Q 020623 221 GSESIDEEDQGSQISRFLEGYR 242 (323)
Q Consensus 221 ~~~~~~~~~t~~~I~~Fi~~~~ 242 (323)
| .+.+.|.+||+.+-
T Consensus 97 G-------~~~~~l~~~i~k~a 111 (113)
T d1ti3a_ 97 G-------ADKDGLPTLVAKHA 111 (113)
T ss_dssp C-------CCTTHHHHHHHHHH
T ss_pred C-------CCHHHHHHHHHHHh
Confidence 2 35678999999875
|
| >d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.46 E-value=0.00024 Score=55.12 Aligned_cols=101 Identities=9% Similarity=0.135 Sum_probs=72.3
Q ss_pred CCCeeecChhhHHHhh-cCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC----eEEEEEcCcchhhHhhhcCCcCCC
Q 020623 128 LPLSVPINQDTLNLLK-DDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE----LVFCYVGIKQFADFADTFEANKKS 202 (323)
Q Consensus 128 ~Plv~~~t~~~~~~~~-~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~----l~F~~vd~~~~~~~~~~~gl~~~~ 202 (323)
-+.|.+++..||..+. +.++++++.|+.. .=..-+++...+.++|+.+++ +.|+.+|.. ...+..+++ .
T Consensus 11 ~~~V~~l~~~nf~~~v~~~~k~vlV~F~a~-wC~~C~~~~p~~~~la~~~~~~~~~v~~~~~d~~--~~~~~~~~v---~ 84 (140)
T d2b5ea1 11 DSSVFQLVGKNHDEIVNDPKKDVLVLYYAP-WCGHCKRLAPTYQELADTYANATSDVLIAKLDHT--ENDVRGVVI---E 84 (140)
T ss_dssp SCSEEEECTTTHHHHHHCTTCCEEEEEECT-TCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEGG--GCCCSSCCC---S
T ss_pred CCCcEEecCcCHHHHHhcCCCCEEEEEEec-cCcccchhHHHHHHHHHHHhccccceEEEeeecc--chhcccccc---c
Confidence 3579999999999865 5567777777653 223446788889999988753 666667654 456788888 5
Q ss_pred CCCeEEEEeCCc---ceeeccCCCCCCCCCCHHHHHHHHHHH
Q 020623 203 KLPKMVVWDGNE---NYLTVIGSESIDEEDQGSQISRFLEGY 241 (323)
Q Consensus 203 ~~P~ivI~~~~~---kY~~~~~~~~~~~~~t~~~I~~Fi~~~ 241 (323)
.+|.++++..++ ...+ .+..+.+.|.+||++-
T Consensus 85 ~~Ptl~~f~~g~~~~~~~y-------~G~~t~~~l~~fi~~~ 119 (140)
T d2b5ea1 85 GYPTIVLYPGGKKSESVVY-------QGSRSLDSLFDFIKEN 119 (140)
T ss_dssp SSSEEEEECCTTSCCCCBC-------CSCCCHHHHHHHHHHH
T ss_pred cCCeEEEEECCEEcceeEe-------CCCCCHHHHHHHHHHc
Confidence 799999886532 2212 3457999999999974
|
| >d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Bacterocin transport accessory protein Bta species: Streptococcus pneumoniae [TaxId: 1313]
Probab=97.45 E-value=0.00044 Score=51.68 Aligned_cols=89 Identities=10% Similarity=0.170 Sum_probs=64.7
Q ss_pred cCChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeeccc-----chhhHhhcCCCCCCeEE
Q 020623 32 LNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAKDF-----SEDTMVLYDFDKVPALV 98 (323)
Q Consensus 32 i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~~~-----~~~~~~~~~~~~~p~iv 98 (323)
+.|.+++++.+.+++ +++|.|+.. .+.+.+++..+...+.|...... .++++.++++.+.|+++
T Consensus 13 ~~t~~~~~~~i~~~~---~~~v~f~~~~C~~C~~~~p~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~V~~~PTli 89 (115)
T d1zmaa1 13 VTTVVRAQEALDKKE---TATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFINSEEPSQLNDLQAFRSRYGIPTVPGFV 89 (115)
T ss_dssp ECCHHHHHHHHHTTC---CEEEEEECTTCHHHHHHHHHHHHHHHHHCCCCEEEETTCGGGHHHHHHHHHHHTCCSSCEEE
T ss_pred eCCHHHHHHHHhcCC---CEEEEEcCCCCccHHHHHHHHHHHHHHhhhhhhhheeecccccccccccccccccccccEEE
Confidence 457899999998887 356666542 35788888888766655433211 13467789999999999
Q ss_pred EecCCCCCCccccCCCCHHHHHHHHH
Q 020623 99 ALQPSYNEHNIFYGPFDEEFLEEFIK 124 (323)
Q Consensus 99 v~k~~~~~~~~y~g~~~~~~L~~fI~ 124 (323)
+|+++ +....+.|..+.++|++||.
T Consensus 90 ~~~~g-k~~~~~~G~~~~~el~~fla 114 (115)
T d1zmaa1 90 HITDG-QINVRCDSSMSAQEIKDFAG 114 (115)
T ss_dssp EEETT-EEEEECCTTCCHHHHHHHHT
T ss_pred EEECC-EEEEEEcCCCCHHHHHHHHc
Confidence 99863 33456789999999999984
|
| >d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: ERP29 N domain-like domain: Windbeutel, N-terminal domain species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=97.40 E-value=0.0025 Score=47.88 Aligned_cols=108 Identities=16% Similarity=0.301 Sum_probs=70.1
Q ss_pred CCeeecChhhHHHhhcCCCcEEEEEEeCC-ChhHHHHHHHHHHHHHHhCCCeEEEEEcCcch-----hhHhhhcCCcCCC
Q 020623 129 PLSVPINQDTLNLLKDDKRKIVLAIVEDE-TEEKSQKLVTTLKAAASANRELVFCYVGIKQF-----ADFADTFEANKKS 202 (323)
Q Consensus 129 Plv~~~t~~~~~~~~~~~~~~v~~f~~~~-~~e~~~~~~~~l~~~A~~~~~l~F~~vd~~~~-----~~~~~~~gl~~~~ 202 (323)
|-+.+|+.+||.++....+.+++-|...- ..-+.+.+.+..+++++...++.++-+|..++ ..++..|++ ...
T Consensus 2 ~g~v~L~~~nFd~~v~~~~~~lV~Fya~wC~~ck~p~f~kla~~~~~~~~~v~ia~Vd~~~~~~~~n~~l~~~~~i-~~~ 80 (122)
T d2c0ga2 2 TGCVDLDELSFEKTVERFPYSVVKFDIASPYGEKHEAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGDRYKV-DDK 80 (122)
T ss_dssp TTCEECCTTTHHHHHTTSSEEEEEEEESSCCSHHHHHHHHHHHHHHHHCSSEEEEEEEECSSTTCTTHHHHHHTTC-CTT
T ss_pred CceEEcChHhHHHHHhcCCcEEEEEECCCCCcccCHHHHHHHHHHHHhCCCeEEEeccccccccccCHHHHHHhhc-ccC
Confidence 44789999999998877665556565421 11222333333334444455588999988654 457888999 556
Q ss_pred CCCeEEEEeCCc-ceeeccCCCCCCCCCCHHHHHHHHHHH
Q 020623 203 KLPKMVVWDGNE-NYLTVIGSESIDEEDQGSQISRFLEGY 241 (323)
Q Consensus 203 ~~P~ivI~~~~~-kY~~~~~~~~~~~~~t~~~I~~Fi~~~ 241 (323)
.+|.+.++...+ ...... ..++.|.++|.+||++-
T Consensus 81 ~~PTi~~f~~g~~~~~~~~----~~g~rt~~~l~~fv~~~ 116 (122)
T d2c0ga2 81 NFPSIFLFKGNADEYVQLP----SHVDVTLDNLKAFVSAN 116 (122)
T ss_dssp SCCEEEEESSSSSSEEECC----TTSCCCHHHHHHHHHHH
T ss_pred CCCcEEEEeCCcccccccc----cCCCCCHHHHHHHHHHh
Confidence 899999988643 222211 13457999999999874
|
| >d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.40 E-value=0.00075 Score=50.29 Aligned_cols=95 Identities=14% Similarity=0.216 Sum_probs=66.2
Q ss_pred CceecCChHHHHHHHHh---cCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEee-cccchhhHhhcCCCCCC
Q 020623 28 DVSILNSDAEVSDFVEN---AGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVA-KDFSEDTMVLYDFDKVP 95 (323)
Q Consensus 28 ~v~~i~s~~~l~~fl~~---~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~-~~~~~~~~~~~~~~~~p 95 (323)
.|..+.|.+++++.+.. ++. +++|-|... .+.+.++++.+.+ +.|... .+-.++++.+|++.+.|
T Consensus 7 ~vi~i~s~~~~~~~~~~~~~~~~--~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~-~~~~~vd~~~~~~l~~~~~V~~~P 83 (114)
T d1xfla_ 7 QVIACHTVETWNEQLQKANESKT--LVVVDFTASWCGPCRFIAPFFADLAKKLPN-VLFLKVDTDELKSVASDWAIQAMP 83 (114)
T ss_dssp CCEEESSHHHHHHHHHHHHHTTC--EEEEEEECTTCHHHHHHHHHHHHHHHHCSS-EEEEEEETTTSHHHHHHTTCCSSS
T ss_pred cEEEEcCHHHHHHHHHHhhccCC--eEEEEEEcCCCCCccccccchhhhcccccc-cceeEEEeeeceeeccccceeeeE
Confidence 47788899988876543 222 567777543 2478888988864 555444 23467888999999999
Q ss_pred eEEEecCCCCCCccccCCCCHHHHHHHHHhhc
Q 020623 96 ALVALQPSYNEHNIFYGPFDEEFLEEFIKQNF 127 (323)
Q Consensus 96 ~ivv~k~~~~~~~~y~g~~~~~~L~~fI~~~~ 127 (323)
++++|+++ +....+.|. +.++|++||.++.
T Consensus 84 t~~~~~~G-~~v~~~~G~-~~~~l~~~i~k~l 113 (114)
T d1xfla_ 84 TFMFLKEG-KILDKVVGA-KKDELQSTIAKHL 113 (114)
T ss_dssp EEEEEETT-EEEEEEESC-CHHHHHHHHHHHC
T ss_pred EEEEEECC-EEEEEEeCc-CHHHHHHHHHHhh
Confidence 99999853 222235574 7899999998874
|
| >d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=97.38 E-value=0.0016 Score=48.12 Aligned_cols=100 Identities=12% Similarity=0.204 Sum_probs=70.2
Q ss_pred CeeecC-hhhHHHhh--cCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC-eEEEEEcCcchhhHhhhcCCcCCCCCC
Q 020623 130 LSVPIN-QDTLNLLK--DDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLP 205 (323)
Q Consensus 130 lv~~~t-~~~~~~~~--~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~-l~F~~vd~~~~~~~~~~~gl~~~~~~P 205 (323)
.+.++. .+++...+ .+++++++-|... -=..-..+...+.++++++++ +.++.+|.++.+.+++.||+ ...|
T Consensus 6 ~v~~i~~~~~~~~~l~~~~~k~vlv~f~a~-wC~~C~~~~p~~~~l~~~~~~~~~~~~i~~d~~~~l~~~~~V---~~~P 81 (111)
T d1xwaa_ 6 MVYQVKDKADLDGQLTKASGKLVVLDFFAT-WCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDIAMEYNI---SSMP 81 (111)
T ss_dssp CEEECCSHHHHHHHHHHHTTSEEEEEEECT-TCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCHHHHHHTTC---CSSS
T ss_pred eEEEECCHHHHHHHHHhcCCCEEEEEEECC-cccCccccchhHHHHhhhcccceEEEEEEeecCcchhhcCCC---cccc
Confidence 455554 45666543 2456776666652 113346778899999999998 99999999988889999999 5799
Q ss_pred eEEEEeCCcceeeccCCCCCCCCCCHHHHHHHHHH
Q 020623 206 KMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEG 240 (323)
Q Consensus 206 ~ivI~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~~ 240 (323)
.++++...+......| .+.+.|.+||+.
T Consensus 82 t~~~~~~G~~v~~~~G-------~~~~~l~~~I~~ 109 (111)
T d1xwaa_ 82 TFVFLKNGVKVEEFAG-------ANAKRLEDVIKA 109 (111)
T ss_dssp EEEEEETTEEEEEEES-------CCHHHHHHHHHH
T ss_pred EEEEEECCEEEEEEeC-------CCHHHHHHHHHh
Confidence 9998865433222223 356789999875
|
| >d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=97.31 E-value=0.0027 Score=46.24 Aligned_cols=100 Identities=13% Similarity=0.111 Sum_probs=68.3
Q ss_pred ecChhhHHHhhcCCCcEEEE-EEeCCChhHHHHHHHHHHHHHHh----CCC-eEEEEEcCcchhhHhhhcCCcCCCCCCe
Q 020623 133 PINQDTLNLLKDDKRKIVLA-IVEDETEEKSQKLVTTLKAAASA----NRE-LVFCYVGIKQFADFADTFEANKKSKLPK 206 (323)
Q Consensus 133 ~~t~~~~~~~~~~~~~~v~~-f~~~~~~e~~~~~~~~l~~~A~~----~~~-l~F~~vd~~~~~~~~~~~gl~~~~~~P~ 206 (323)
+++.++...+...++|+++. |... .=..=+.+...+.++|.. +.+ +.+..+|.+.++.+++.||+ ...|.
T Consensus 1 ~l~~~~~e~~~~~~~~v~i~~F~a~-wC~~C~~~~p~~~~la~~~~~~~~~~v~~~~id~~~~~~l~~~~~V---~~vPT 76 (107)
T d1a8la2 1 NLMDETKQAIRNIDQDVRILVFVTP-TCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPEWADQYNV---MAVPK 76 (107)
T ss_dssp CCCHHHHHHHTTCCSCEEEEEEECS-SCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGGCHHHHHHTTC---CSSCE
T ss_pred CCCHHHHHHHHhcCCCeEEEEEEcC-ccccchhhChhHHhhhhhhhhccCCcEEEEEecccccccccccccc---ccceE
Confidence 36677777777777887654 6542 112234556667776653 334 99999999999999999999 57899
Q ss_pred EEEEeCCc-ceeeccCCCCCCCCCCHHHHHHHHHHHHc
Q 020623 207 MVVWDGNE-NYLTVIGSESIDEEDQGSQISRFLEGYRE 243 (323)
Q Consensus 207 ivI~~~~~-kY~~~~~~~~~~~~~t~~~I~~Fi~~~~~ 243 (323)
+++....+ ...+. +..+.+.+.+||.+.++
T Consensus 77 i~i~~~G~~~~~~~-------G~~~~~~~~~~i~~al~ 107 (107)
T d1a8la2 77 IVIQVNGEDRVEFE-------GAYPEKMFLEKLLSALS 107 (107)
T ss_dssp EEEEETTEEEEEEE-------SCCCHHHHHHHHHHHHC
T ss_pred EEEEeCCeEEEEEE-------CCCCHHHHHHHHHHhhC
Confidence 87765432 33332 34688999999988764
|
| >d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]
Probab=97.24 E-value=0.00068 Score=50.41 Aligned_cols=97 Identities=14% Similarity=0.231 Sum_probs=66.6
Q ss_pred CceecCChHHHHHHHHhc-CCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeec-ccchhhHhhcCCCCCCeE
Q 020623 28 DVSILNSDAEVSDFVENA-GTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAK-DFSEDTMVLYDFDKVPAL 97 (323)
Q Consensus 28 ~v~~i~s~~~l~~fl~~~-~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~-~~~~~~~~~~~~~~~p~i 97 (323)
.|..|.|.+++++.++.. ...-+++|-|+.+ .+.|.+++.++.+ ..|...+ +..++++.++++...|++
T Consensus 5 ~vi~i~s~e~~~~~l~~~~~~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~~-~~~~~vd~d~~~~l~~~~~I~~~Pt~ 83 (113)
T d1ti3a_ 5 QVIACHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFPN-VTFLKVDVDELKAVAEEWNVEAMPTF 83 (113)
T ss_dssp CEEEECSHHHHHHHHHHHTTSSSEEEEEEECSSCHHHHHHHHHHHHHHHHCSS-EEEEEEETTTCHHHHHHHHCSSTTEE
T ss_pred cEEEEeCHHHHHHHHHHHHcCCCEEEEEEEcCccccchhhhhhhhhhhccCCC-ceEEeeeeeccccccccCeecccceE
Confidence 477889998888766542 1111567777543 2477888988864 5565553 246788999999999999
Q ss_pred EEecCCCCCCccccCCCCHHHHHHHHHhhc
Q 020623 98 VALQPSYNEHNIFYGPFDEEFLEEFIKQNF 127 (323)
Q Consensus 98 vv~k~~~~~~~~y~g~~~~~~L~~fI~~~~ 127 (323)
++|+++ +....+.| .+.+.|.+||.+|+
T Consensus 84 ~~~k~G-~~v~~~~G-~~~~~l~~~i~k~a 111 (113)
T d1ti3a_ 84 IFLKDG-KLVDKTVG-ADKDGLPTLVAKHA 111 (113)
T ss_dssp EEEETT-EEEEEEEC-CCTTHHHHHHHHHH
T ss_pred EEEECC-EEEEEEcC-CCHHHHHHHHHHHh
Confidence 999863 22223446 46788999999875
|
| >d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: HyaE-like domain: Hydrogenase-1 operon protein HyaE species: Salmonella typhimurium [TaxId: 90371]
Probab=97.24 E-value=0.00065 Score=51.27 Aligned_cols=100 Identities=13% Similarity=0.199 Sum_probs=63.1
Q ss_pred HhcCCCceecCChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcC-ceeEEeec-ccchhhHhhcCCC
Q 020623 23 KFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKK-KAWFAVAK-DFSEDTMVLYDFD 92 (323)
Q Consensus 23 k~~~p~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~-~~~F~~~~-~~~~~~~~~~~~~ 92 (323)
+......+.+ +..+++++++..+.. ++++-|... ...+.++++.+.+ ++.++.++ +.+++++.+|++.
T Consensus 7 ~~~~~g~~~v-~~~~ld~~~~~~~~~-~vll~f~a~wCp~C~~~~pvl~eL~~~~~~~~~~~~~Vd~d~~~~l~~~~~V~ 84 (119)
T d2es7a1 7 RLLTRGWQPV-EASTVDDWIKRVGDG-VILLSSDPRRTPEVSDNPVMIAELLREFPQFDWQVAVADLEQSEAIGDRFNVR 84 (119)
T ss_dssp HHHTTTCEEC-CCC--------CCSE-EEEECCCSCC----CCHHHHHHHHHHTCTTSCCEEEEECHHHHHHHHHTTTCC
T ss_pred HHHHcCCcee-cccCHHHHHHhCCCc-EEEEeecCCCCccHHHHHHHHHHHHHhcCCCceEEEEEECCCCHHHHHhcCcC
Confidence 3444567777 578899999877643 445545431 2478899999876 46676663 2356788999999
Q ss_pred CCCeEEEecCCCCCCccccCCCCHHHHHHHHHh
Q 020623 93 KVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQ 125 (323)
Q Consensus 93 ~~p~ivv~k~~~~~~~~y~g~~~~~~L~~fI~~ 125 (323)
..|++++|+++ +....+.|..+.++|.++|+.
T Consensus 85 ~~Pt~~~~~~G-~~v~~~~G~~~~~~l~~~i~~ 116 (119)
T d2es7a1 85 RFPATLVFTDG-KLRGALSGIHPWAELLTLMRS 116 (119)
T ss_dssp SSSEEEEESCC-----CEESCCCHHHHHHHHHH
T ss_pred cceEEEEEEcC-eEEEEeeCCCCHHHHHHHHHH
Confidence 99999999852 334457798899999999975
|
| >d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]
Probab=97.16 E-value=0.0012 Score=49.08 Aligned_cols=95 Identities=18% Similarity=0.149 Sum_probs=66.0
Q ss_pred CceecCChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeecc--cchhhHhhcCCCCCCeE
Q 020623 28 DVSILNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAKD--FSEDTMVLYDFDKVPAL 97 (323)
Q Consensus 28 ~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~~--~~~~~~~~~~~~~~p~i 97 (323)
.+.+++ .+++.++++.++.. +++|-|... .+.|.++|.++.+ +.|...+. ..++++.++++.+.|++
T Consensus 7 ~v~~~~-~d~f~~~l~~~~~k-~vvv~f~a~wC~~C~~~~p~~~~l~~~~~~-v~~~~vd~~~~~~~l~~~~~V~~~Pt~ 83 (112)
T d1f9ma_ 7 KVTEVN-KDTFWPIVKAAGDK-PVVLDMFTQWCGPCKAMAPKYEKLAEEYLD-VIFLKLDCNQENKTLAKELGIRVVPTF 83 (112)
T ss_dssp SEEEEC-TTTHHHHHHTCTTS-CEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEECSSTTHHHHHHHCCSSSSEE
T ss_pred eeEEeC-HHHHHHHHHHcCCC-EEEEEEEcCCCcchHHHHHHHhhhcccccc-ceeecccccccchhhHhheeeccCCEE
Confidence 467884 57899988764321 577776542 2478899999875 44544322 25688999999999999
Q ss_pred EEecCCCCCCccccCCCCHHHHHHHHHhhc
Q 020623 98 VALQPSYNEHNIFYGPFDEEFLEEFIKQNF 127 (323)
Q Consensus 98 vv~k~~~~~~~~y~g~~~~~~L~~fI~~~~ 127 (323)
++|+++ ..-..+.|. +.+.|.+||+.++
T Consensus 84 ~~~k~G-~~v~~~~G~-~~~~l~e~i~~~~ 111 (112)
T d1f9ma_ 84 KILKEN-SVVGEVTGA-KYDKLLEAIQAAR 111 (112)
T ss_dssp EEEETT-EEEEEEESS-CHHHHHHHHHHHH
T ss_pred EEEECC-EEEEEEeCC-CHHHHHHHHHHcc
Confidence 999852 222245675 6788999998764
|
| >d2djka1 c.47.1.2 (A:1-133) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Fungi (Humicola insolens) [TaxId: 34413]
Probab=97.15 E-value=0.0029 Score=48.26 Aligned_cols=98 Identities=15% Similarity=0.154 Sum_probs=68.5
Q ss_pred CCCceecCChHHHHHHHHhcCCcccEEEEecCC-------hhHHHHHHHhhcCceeEEeeccc-chhhHhhcCCC--CCC
Q 020623 26 APDVSILNSDAEVSDFVENAGTFFPLFIGFGLD-------ESVMSNLALKYKKKAWFAVAKDF-SEDTMVLYDFD--KVP 95 (323)
Q Consensus 26 ~p~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~-------~~~f~~~A~~~~~~~~F~~~~~~-~~~~~~~~~~~--~~p 95 (323)
-|-|.++ +.+.+..+.+... +.++-|.+. ...|+++|+++++.+.|..++.. ...++..+|+. ..|
T Consensus 5 lPLv~e~-~~~n~~~~~~~~~---pl~~lf~~~~~~~~~~~~~~~~vA~~~~~ki~Fv~vd~~~~~~~l~~~gl~~~~~P 80 (133)
T d2djka1 5 SPLIGEI-GPETYSDYMSAGI---PLAYIFAETAEERKELSDKLKPIAEAQRGVINFGTIDAKAFGAHAGNLNLKTDKFP 80 (133)
T ss_dssp CCCSEEC-CHHHHHHHHHTTS---CEEEEECSCSSSHHHHHHHHHHHHHSSTTTSEEEEECTTTTGGGTTTTTCCSSSSS
T ss_pred CCceecc-ChhhHHHHhcCCC---CEEEEEeCCchHHHHHHHHHHHHHHHhcCceEEEEEeHHHhHHHHHHhcCCcccCC
Confidence 5678889 5888888887654 566666542 13688999999999999887432 23445566764 468
Q ss_pred eEEEecCCCCCCcccc--CCCCHHHHHHHHHhhc
Q 020623 96 ALVALQPSYNEHNIFY--GPFDEEFLEEFIKQNF 127 (323)
Q Consensus 96 ~ivv~k~~~~~~~~y~--g~~~~~~L~~fI~~~~ 127 (323)
.++++....+....|. +.++.+.|.+||++..
T Consensus 81 ~~~i~~~~~~~~~~~~~~~~i~~~~i~~Fi~d~~ 114 (133)
T d2djka1 81 AFAIQEVAKNQKFPFDQEKEITFEAIKAFVDDFV 114 (133)
T ss_dssp EEEEECTTTCCBCCCCSSSCCCHHHHHHHHHHHH
T ss_pred cEEEEEcCCCceecCCccccCCHHHHHHHHHHHH
Confidence 8888875434455553 5789999999998754
|
| >d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: HyaE-like domain: Hydrogenase-1 operon protein HyaE species: Escherichia coli [TaxId: 562]
Probab=97.08 E-value=0.0011 Score=50.91 Aligned_cols=107 Identities=14% Similarity=0.170 Sum_probs=76.1
Q ss_pred HHHhcCCCceecCChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcCc-eeEEeec-ccchhhHhhcC
Q 020623 21 LKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKKK-AWFAVAK-DFSEDTMVLYD 90 (323)
Q Consensus 21 l~k~~~p~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~-~~F~~~~-~~~~~~~~~~~ 90 (323)
+++++......+ +.+.+++++...... +++|-|... ...+.++|+++.+. +.++.++ +.+.+++.+|+
T Consensus 11 ~~~~~~~g~~~~-~~~~~d~~~~~~~~~-vVll~f~a~wCp~C~~~~pvl~ela~~~~~~~~~~a~Vd~d~~~~la~~~~ 88 (132)
T d2hfda1 11 WQRMLARGWTPV-SESRLDDWLTQAPDG-VVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFG 88 (132)
T ss_dssp HHHHHTTTCEEE-CHHHHHHHHHHCSEE-EEEECSCCSCCSSSSCCTHHHHHHHTTCTTSCEEEEEECHHHHHHHHHHHT
T ss_pred HHHHHHcCCccc-ccccHHHHHHhCCCc-EEEEEeeCCCChhHHHHHHHHHHHHHHccCCcceeEEEEecCCHHHHHhhc
Confidence 344445567777 579999999877642 455555431 35889999998775 4566553 24677899999
Q ss_pred CCCCCeEEEecCCCCCCccccCCCCHHHHHHHHHhhcCCC
Q 020623 91 FDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQNFLPL 130 (323)
Q Consensus 91 ~~~~p~ivv~k~~~~~~~~y~g~~~~~~L~~fI~~~~~Pl 130 (323)
+...|++++|+++ +.-..+.|..+.++|..||+...-|.
T Consensus 89 V~~~PT~~~~~~G-~~v~~~~G~~~~~~l~~~i~~ll~~~ 127 (132)
T d2hfda1 89 VFRFPATLVFTGG-NYRGVLNGIHPWAELINLMRGLVEPQ 127 (132)
T ss_dssp CCSCCEEEEEETT-EEEEEECCCSCHHHHHHHHHHHHSCS
T ss_pred cCcceeEEEEEcC-cEeeeecCCCCHHHHHHHHHHHhCcc
Confidence 9999999999852 22335679999999999998766554
|
| >d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: HyaE-like domain: Hydrogenase-1 operon protein HyaE species: Salmonella typhimurium [TaxId: 90371]
Probab=97.00 E-value=0.0012 Score=49.72 Aligned_cols=104 Identities=9% Similarity=0.117 Sum_probs=63.4
Q ss_pred eeecChhhHHHhhcCCCcEEEEEEeCCC-hhHHHHHHHHHHHHHHhCCC--eEEEEEcCcchhhHhhhcCCcCCCCCCeE
Q 020623 131 SVPINQDTLNLLKDDKRKIVLAIVEDET-EEKSQKLVTTLKAAASANRE--LVFCYVGIKQFADFADTFEANKKSKLPKM 207 (323)
Q Consensus 131 v~~~t~~~~~~~~~~~~~~v~~f~~~~~-~e~~~~~~~~l~~~A~~~~~--l~F~~vd~~~~~~~~~~~gl~~~~~~P~i 207 (323)
+.+++..+++.+.......++++..... -..-..+...|.+++++|.+ +.++.+|.+..+.+++.||+ ...|.+
T Consensus 13 ~~~v~~~~ld~~~~~~~~~~vll~f~a~wCp~C~~~~pvl~eL~~~~~~~~~~~~~Vd~d~~~~l~~~~~V---~~~Pt~ 89 (119)
T d2es7a1 13 WQPVEASTVDDWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREFPQFDWQVAVADLEQSEAIGDRFNV---RRFPAT 89 (119)
T ss_dssp CEECCCC--------CCSEEEEECCCSCC----CCHHHHHHHHHHTCTTSCCEEEEECHHHHHHHHHTTTC---CSSSEE
T ss_pred CceecccCHHHHHHhCCCcEEEEeecCCCCccHHHHHHHHHHHHHhcCCCceEEEEEECCCCHHHHHhcCc---CcceEE
Confidence 4566777777665543333333322111 12235677899999999987 88899999888889999999 589999
Q ss_pred EEEeCCcceeeccCCCCCCCCCCHHHHHHHHHHHHc
Q 020623 208 VVWDGNENYLTVIGSESIDEEDQGSQISRFLEGYRE 243 (323)
Q Consensus 208 vI~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~~~~~ 243 (323)
+++...+..... .+..+.+++.++|+.+++
T Consensus 90 ~~~~~G~~v~~~------~G~~~~~~l~~~i~~lLd 119 (119)
T d2es7a1 90 LVFTDGKLRGAL------SGIHPWAELLTLMRSIVD 119 (119)
T ss_dssp EEESCC----CE------ESCCCHHHHHHHHHHHHC
T ss_pred EEEEcCeEEEEe------eCCCCHHHHHHHHHHHhC
Confidence 998643211111 234688999999998764
|
| >d2b5ea2 c.47.1.2 (A:142-239) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.97 E-value=0.0014 Score=46.14 Aligned_cols=84 Identities=23% Similarity=0.344 Sum_probs=61.1
Q ss_pred HHHHHHHHhcCCcccEEEEecC---C-hhHHHHHHHhhcCceeEEeecccchhhHhhcCCCCCCeEEEecCCC-CCCccc
Q 020623 36 AEVSDFVENAGTFFPLFIGFGL---D-ESVMSNLALKYKKKAWFAVAKDFSEDTMVLYDFDKVPALVALQPSY-NEHNIF 110 (323)
Q Consensus 36 ~~l~~fl~~~~~~~~~vVgf~~---~-~~~f~~~A~~~~~~~~F~~~~~~~~~~~~~~~~~~~p~ivv~k~~~-~~~~~y 110 (323)
++++.++.+.....|++|-.+. + .++|.++|..+++++.|.-..+. ...|.+.+|=++. +++.+|
T Consensus 6 ~dl~~~l~n~t~v~pVVV~~Gv~d~~fNeTF~~~A~~l~~Dy~Fvs~~~~----------~~~~kLsV~LP~e~dEPIvf 75 (98)
T d2b5ea2 6 ADLPAYLANETFVTPVIVQSGKIDADFNATFYSMANKHFNDYDFVSAENA----------DDDFKLSIYLPSAMDEPVVY 75 (98)
T ss_dssp SCHHHHHHHSCCSSCEEEEEESCCHHHHHHHHHHHHHTTTTCEEEEEECT----------TSCCEEEEEETTEEEEEEEC
T ss_pred hhhHHHHhcCcccCCEEEeCCccccchhHHHHHHHHHhhcceEEEeccCC----------CCCccEEEECCCCCCCCeEE
Confidence 3577788887732378887764 2 46899999999999988754211 1346777877753 478899
Q ss_pred cCCC----CHHHHHHHHHhhcCC
Q 020623 111 YGPF----DEEFLEEFIKQNFLP 129 (323)
Q Consensus 111 ~g~~----~~~~L~~fI~~~~~P 129 (323)
.|+. +.+.|.+||+-.++|
T Consensus 76 ~G~~~~i~~a~~l~~WlkVe~lP 98 (98)
T d2b5ea2 76 NGKKADIADADVFEKWLQVEALP 98 (98)
T ss_dssp CSCHHHHTSHHHHHHHHHHHSSC
T ss_pred cCccCCcccHHHHHHHHeeeccC
Confidence 9862 467799999999987
|
| >d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Bacterocin transport accessory protein Bta species: Streptococcus pneumoniae [TaxId: 1313]
Probab=96.93 E-value=0.0079 Score=44.38 Aligned_cols=99 Identities=14% Similarity=0.135 Sum_probs=70.4
Q ss_pred CeeecChhhHHHhhcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC-eEEEEEcCcc----hhhHhhhcCCcCCCCC
Q 020623 130 LSVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQ----FADFADTFEANKKSKL 204 (323)
Q Consensus 130 lv~~~t~~~~~~~~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~-l~F~~vd~~~----~~~~~~~~gl~~~~~~ 204 (323)
.+...|.+.+......+.++++.|... .=..=..+...|.+++++++. +.|+.++... ++.+++.+|+ ...
T Consensus 10 ~~~~~t~~~~~~~i~~~~~~~v~f~~~-~C~~C~~~~p~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~V---~~~ 85 (115)
T d1zmaa1 10 DLEVTTVVRAQEALDKKETATFFIGRK-TCPYCRKFAGTLSGVVAETKAHIYFINSEEPSQLNDLQAFRSRYGI---PTV 85 (115)
T ss_dssp TSEECCHHHHHHHHHTTCCEEEEEECT-TCHHHHHHHHHHHHHHHHHCCCCEEEETTCGGGHHHHHHHHHHHTC---CSS
T ss_pred eeeeCCHHHHHHHHhcCCCEEEEEcCC-CCccHHHHHHHHHHHHHHhhhhhhhheeeccccccccccccccccc---ccc
Confidence 456678888888777788887777652 223446777889999999876 7777666532 2456788999 578
Q ss_pred CeEEEEeCCcceeeccCCCCCCCCCCHHHHHHHH
Q 020623 205 PKMVVWDGNENYLTVIGSESIDEEDQGSQISRFL 238 (323)
Q Consensus 205 P~ivI~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi 238 (323)
|+++++...+..... .+..+.++|.+|+
T Consensus 86 PTli~~~~gk~~~~~------~G~~~~~el~~fl 113 (115)
T d1zmaa1 86 PGFVHITDGQINVRC------DSSMSAQEIKDFA 113 (115)
T ss_dssp CEEEEEETTEEEEEC------CTTCCHHHHHHHH
T ss_pred cEEEEEECCEEEEEE------cCCCCHHHHHHHH
Confidence 999988754433222 3568999999997
|
| >d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Fungi (Humicola insolens) [TaxId: 34413]
Probab=96.92 E-value=0.00094 Score=49.53 Aligned_cols=101 Identities=10% Similarity=0.125 Sum_probs=65.7
Q ss_pred CCeeecChhhHHHh-hcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC------eEEEEEcCcchhhHhhhcCCcCC
Q 020623 129 PLSVPINQDTLNLL-KDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE------LVFCYVGIKQFADFADTFEANKK 201 (323)
Q Consensus 129 Plv~~~t~~~~~~~-~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~------l~F~~vd~~~~~~~~~~~gl~~~ 201 (323)
+.|..++.+|+.++ ..+++++++.|+.. -=..-+.+...+.++|+.+++ +.+...+.. .....+++
T Consensus 2 g~V~~lt~~nF~~~v~~~~k~vlV~fya~-wC~~Ck~~~p~~~~la~~~~~~~~~~~~~~~~~~~~---~~~~~~~v--- 74 (116)
T d2djja1 2 GPVTVVVAKNYNEIVLDDTKDVLIEFYAP-WCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDAT---ANDVPDEI--- 74 (116)
T ss_dssp CSSEECCTTTTTTSSSCTTSCEEEEEECS-SCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETT---TSCCSSCC---
T ss_pred cCcEEcccCCHHHHHhcCCCCEEEEEEec-ccccccccchHHHHHHHHHhcccccceeEEEecccc---hhhhcccc---
Confidence 46889999999886 46677887777753 123456788888999988753 344444433 22345677
Q ss_pred CCCCeEEEEeCCcceeeccCCCCCCCCCCHHHHHHHHHH
Q 020623 202 SKLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEG 240 (323)
Q Consensus 202 ~~~P~ivI~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~~ 240 (323)
..+|.++++....+..... ..+..+.++|.+||++
T Consensus 75 ~~~Pti~~f~~g~~~~~~~----~~g~~~~~~l~~fi~~ 109 (116)
T d2djja1 75 QGFPTIKLYPAGAKGQPVT----YSGSRTVEDLIKFIAE 109 (116)
T ss_dssp SSSSEEEEECSSCTTSCCC----CCCCSCHHHHHHHHHH
T ss_pred cCCCEEEEEECCccCceEE----ecCCCCHHHHHHHHHH
Confidence 5799998875432111100 0245789999999986
|
| >d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: HyaE-like domain: Hydrogenase-1 operon protein HyaE species: Escherichia coli [TaxId: 562]
Probab=96.87 E-value=0.00095 Score=51.32 Aligned_cols=109 Identities=12% Similarity=0.164 Sum_probs=73.1
Q ss_pred CeeecChhhHHHhhcCCCcEEEEEEeCCC-hhHHHHHHHHHHHHHHhCCC--eEEEEEcCcchhhHhhhcCCcCCCCCCe
Q 020623 130 LSVPINQDTLNLLKDDKRKIVLAIVEDET-EEKSQKLVTTLKAAASANRE--LVFCYVGIKQFADFADTFEANKKSKLPK 206 (323)
Q Consensus 130 lv~~~t~~~~~~~~~~~~~~v~~f~~~~~-~e~~~~~~~~l~~~A~~~~~--l~F~~vd~~~~~~~~~~~gl~~~~~~P~ 206 (323)
-...++..++..+.......++++..... -..-..+...|.++|+++++ +.++.+|.+..+.+++.||+ ..+|.
T Consensus 18 g~~~~~~~~~d~~~~~~~~~vVll~f~a~wCp~C~~~~pvl~ela~~~~~~~~~~a~Vd~d~~~~la~~~~V---~~~PT 94 (132)
T d2hfda1 18 GWTPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGV---FRFPA 94 (132)
T ss_dssp TCEEECHHHHHHHHHHCSEEEEEECSCCSCCSSSSCCTHHHHHHHTTCTTSCEEEEEECHHHHHHHHHHHTC---CSCCE
T ss_pred CCcccccccHHHHHHhCCCcEEEEEeeCCCChhHHHHHHHHHHHHHHccCCcceeEEEEecCCHHHHHhhcc---Cccee
Confidence 34456778887765443333332222100 01123455789999999987 78889999888889999999 68999
Q ss_pred EEEEeCCcceeeccCCCCCCCCCCHHHHHHHHHHHHcCccc
Q 020623 207 MVVWDGNENYLTVIGSESIDEEDQGSQISRFLEGYREGRTE 247 (323)
Q Consensus 207 ivI~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~~~~~Gkl~ 247 (323)
++++...+..... .+..+.+.+.+||+.++...-.
T Consensus 95 ~~~~~~G~~v~~~------~G~~~~~~l~~~i~~ll~~~~e 129 (132)
T d2hfda1 95 TLVFTGGNYRGVL------NGIHPWAELINLMRGLVEPQQE 129 (132)
T ss_dssp EEEEETTEEEEEE------CCCSCHHHHHHHHHHHHSCSSC
T ss_pred EEEEEcCcEeeee------cCCCCHHHHHHHHHHHhCcccc
Confidence 9988644322222 3457889999999999876543
|
| >d1a8ya2 c.47.1.3 (A:127-228) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Calsequestrin domain: Calsequestrin species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=96.73 E-value=0.0044 Score=45.23 Aligned_cols=87 Identities=14% Similarity=0.195 Sum_probs=58.8
Q ss_pred hhHHHhhcCCC-cEEEEEEeCCChhHHHHHHHHHHHHHHhCCC-eEEEEEcCcchhhHhhhcCCcCCCCCCeEEEEeC-C
Q 020623 137 DTLNLLKDDKR-KIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDG-N 213 (323)
Q Consensus 137 ~~~~~~~~~~~-~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~-l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI~~~-~ 213 (323)
+.++.+...+. -.++.|.... + ....+.+.++|..+|+ +.|+++.. +.++..+|+ + .|.|++..+ +
T Consensus 8 ~e~~~F~~~~d~v~VvGfF~~~--~--~~~~~~F~~~A~~~rd~~~F~~t~d---~~va~~~~v-~---~~~vvlfr~fd 76 (102)
T d1a8ya2 8 RELQAFENIEDEIKLIGYFKNK--D--SEHYKAFKEAAEEFHPYIPFFATFD---SKVAKKLTL-K---LNEIDFYEAFM 76 (102)
T ss_dssp HHHHHHTTCCSSCEEEEECSST--T--CHHHHHHHHHHHHHTTTSCEEEECC---HHHHHHHCC-C---TTCEEEECTTC
T ss_pred HHHHHHhccCCCEEEEEEECCC--C--cHHHHHHHHHHHHcCCCceEEEECC---HHHHHHcCC-C---CCCEEEeeecC
Confidence 34555655333 3456665521 1 2355789999999987 99999864 356788898 3 588999887 3
Q ss_pred -cceeeccCCCCCCCCCCHHHHHHHHHH
Q 020623 214 -ENYLTVIGSESIDEEDQGSQISRFLEG 240 (323)
Q Consensus 214 -~kY~~~~~~~~~~~~~t~~~I~~Fi~~ 240 (323)
++..++ | ..+|.++|..||+.
T Consensus 77 e~~~~~~-~-----~~~t~~~i~~Fi~~ 98 (102)
T d1a8ya2 77 EEPVTIP-D-----KPNSEEEIVNFVEE 98 (102)
T ss_dssp SSEEECS-S-----SSCCHHHHHHHHHH
T ss_pred CCceecC-C-----CCCCHHHHHHHHHH
Confidence 344332 2 24899999999986
|
| >d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: ERP29 N domain-like domain: Endoplasmic reticulum protein ERP29, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.64 E-value=0.00039 Score=52.58 Aligned_cols=100 Identities=13% Similarity=0.219 Sum_probs=62.3
Q ss_pred eeecChhhHHHhhcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC--------eEEEEEcCcchhhHhhhcCCcCCC
Q 020623 131 SVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE--------LVFCYVGIKQFADFADTFEANKKS 202 (323)
Q Consensus 131 v~~~t~~~~~~~~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~--------l~F~~vd~~~~~~~~~~~gl~~~~ 202 (323)
+.+||.+||..+....+.+++.|...-.... ....++++|+.+.+ +.++.+|+...+.+++.+++ +..
T Consensus 6 ~v~L~~~nFd~~i~~~~~~lV~F~~~wc~~~---~~~~~~~la~~~~~~~~~~~~~V~~~~vd~~~n~~l~~~~~~-~I~ 81 (122)
T d1g7ea_ 6 ALPLDTVTFYKVIPKSKFVLVKFDTQYPYGE---KQDEFKRLAENSASSDDLLVAEVGISDYGDKLNMELSEKYKL-DKE 81 (122)
T ss_dssp SCSCSHHHHHHHGGGSSEEEEEEECSSCCTT---TTHHHHHHHHHGGGCSSEEEEEEESCCTTSCHHHHHHHHHTC-SSS
T ss_pred eEECCHHhHHHHHhhCCeEEEEEecCCcCcc---cCHHHHHHHHHHHHHHHHhhhccceeeccccccHHHHHhhcc-ccc
Confidence 6789999999988777766666643211110 11345566665532 33444455555667777776 557
Q ss_pred CCCeEEEEeCCc--ceeeccCCCCCCCCCCHHHHHHHHHH
Q 020623 203 KLPKMVVWDGNE--NYLTVIGSESIDEEDQGSQISRFLEG 240 (323)
Q Consensus 203 ~~P~ivI~~~~~--kY~~~~~~~~~~~~~t~~~I~~Fi~~ 240 (323)
.+|.|.+..... ..... ++.-|.++|.+||++
T Consensus 82 ~yPTi~~f~~G~~~~~~~y------~G~rt~~~l~~fi~~ 115 (122)
T d1g7ea_ 82 SYPVFYLFRDGDFENPVPY------SGAVKVGAIQRWLKG 115 (122)
T ss_dssp SCEEEEEEESSCCCCCEEE------ESCCCHHHHHHHHHT
T ss_pred CCCeEEEEecCcccCceec------CCCCCHHHHHHHHHh
Confidence 899998876532 11111 245789999999986
|
| >d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: MTH807, thioredoxin/glutaredoxin-like protein species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=96.59 E-value=0.002 Score=45.20 Aligned_cols=67 Identities=9% Similarity=0.139 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHhCCC-eEEEEEcCcchhhHhhhcCCcCCCCCCeEEEEeCCcceeeccCCCCCCCCCCHHHHHHHHHHH
Q 020623 163 QKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEGY 241 (323)
Q Consensus 163 ~~~~~~l~~~A~~~~~-l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~~~ 241 (323)
+.+...+.++|+++++ +.|+.+|.++.+.+++.||+ ..+|.+++ +..++|. | ..+.+.|.+||++.
T Consensus 17 ~~~~p~~~~l~~~~~~~v~~~~vd~d~~~~l~~~~~V---~~~Pt~~~-~~~~~~~---G------~~~~~~l~~~i~~~ 83 (85)
T d1nhoa_ 17 PMAIEVVDEAKKEFGDKIDVEKIDIMVDREKAIEYGL---MAVPAIAI-NGVVRFV---G------APSREELFEAINDE 83 (85)
T ss_dssp TTHHHHHHHHHHHHCSSCCEEEECTTTCGGGGGGTCS---SCSSEEEE-TTTEEEE---C------SSCCHHHHHHHHHH
T ss_pred HHHHHHHhhhcccccccccccccccccchhhHHhcCc---eEeCEEEE-CCcEEEE---c------CCCHHHHHHHHHHh
Confidence 3455678899999987 99999999988889999999 57999765 4444442 2 35789999999876
Q ss_pred H
Q 020623 242 R 242 (323)
Q Consensus 242 ~ 242 (323)
+
T Consensus 84 l 84 (85)
T d1nhoa_ 84 M 84 (85)
T ss_dssp C
T ss_pred h
Confidence 4
|
| >d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=96.53 E-value=0.015 Score=41.40 Aligned_cols=86 Identities=13% Similarity=0.100 Sum_probs=57.4
Q ss_pred HHhhcCCCcEE-EEEEeCCChhHHHHHHHHHHHHHHhCCCeEEEEEcCcchhhHhhhcCCcCCCCCCeEEEEeCCcceee
Q 020623 140 NLLKDDKRKIV-LAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYLT 218 (323)
Q Consensus 140 ~~~~~~~~~~v-~~f~~~~~~e~~~~~~~~l~~~A~~~~~l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI~~~~~kY~~ 218 (323)
..+...+.++. +.|+.. .=..=+.+...+.++|..+.++.|..+|.+.++++++.+|+ ..+|.+++ +++...
T Consensus 8 e~ik~l~~~~~i~~F~s~-~C~~C~~~~p~~~~~a~~~~~i~~~~vd~~~~~~l~~~~~I---~~vPt~~~---ng~~~~ 80 (96)
T d1hyua4 8 EQIRDIDGDFEFETYYSL-SCHNCPDVVQALNLMAVLNPRIKHTAIDGGTFQNEITERNV---MGVPAVFV---NGKEFG 80 (96)
T ss_dssp HHHHHCCSCEEEEEEECT-TCSSHHHHHHHHHHHHHHCTTEEEEEEETTTCHHHHHHTTC---CSSSEEEE---TTEEEE
T ss_pred HHHHhcCCCeEEEEEECC-CCcchHHHHHHHHHHHHhCCceEEEEEecccchHHHhhccc---ccccEEEE---CCEEEE
Confidence 34444445553 445542 11223567788899999988899999999999999999999 57999865 433332
Q ss_pred ccCCCCCCCCCCHHHHHHHHH
Q 020623 219 VIGSESIDEEDQGSQISRFLE 239 (323)
Q Consensus 219 ~~~~~~~~~~~t~~~I~~Fi~ 239 (323)
.| ..+.+.|.++|+
T Consensus 81 -~G------~~~~~~l~~~le 94 (96)
T d1hyua4 81 -QG------RMTLTEIVAKVD 94 (96)
T ss_dssp -ES------CCCHHHHHHHHC
T ss_pred -ec------CCCHHHHHHHHh
Confidence 12 356677776653
|
| >d1bjxa_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.45 E-value=0.009 Score=43.96 Aligned_cols=95 Identities=14% Similarity=0.168 Sum_probs=62.4
Q ss_pred hhHHHhhcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCCeEEEEEcCcchhhHhhhcCCcCCCCCCeEEEEeC-Ccc
Q 020623 137 DTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDG-NEN 215 (323)
Q Consensus 137 ~~~~~~~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI~~~-~~k 215 (323)
+.++.+.....-+++.|... .+ ....+.+.++|+.++++.|+++... .++..+|+ + .|.|++..+ +..
T Consensus 9 ~~~e~f~~~~~v~VVGfF~~--~~--~~~~~~F~~~A~~~~d~~F~~t~~~---~v~~~~~v-~---~~~Ivl~k~~de~ 77 (110)
T d1bjxa_ 9 AAAESLVESSEVAVIGFFKD--VE--SDSAKQFLQAAEAIDDIPFGITSNS---DVFSKYQL-D---KDGVVLFKKFDEG 77 (110)
T ss_dssp HHHHHHHHHSSEEEEEECTT--TT--SHHHHHHHHHHHHCSSSCEEEECCS---HHHHHTTC-S---SCEEEEEESSSSS
T ss_pred HHHHHHhccCCeEEEEEEcC--CC--chHHHHHHHHHHhCcCceEEEECCH---HHHHHcCC-C---CCeEEEeccCCcc
Confidence 44555555444455666542 22 3455789999999988999887654 45677888 3 489998886 322
Q ss_pred eeeccCCCCCCCCCCHHHHHHHHHHHHcCcccc
Q 020623 216 YLTVIGSESIDEEDQGSQISRFLEGYREGRTEQ 248 (323)
Q Consensus 216 Y~~~~~~~~~~~~~t~~~I~~Fi~~~~~Gkl~~ 248 (323)
.... ++.++.+.|.+||+...-.-+.+
T Consensus 78 ~~~~------~~~~~~~~l~~fi~~~~~PlV~e 104 (110)
T d1bjxa_ 78 RNNF------EGEVTKENLLDFIKHNQLPLVIE 104 (110)
T ss_dssp BCCC------CSCCCHHHHHHHHHHHSSCCCSS
T ss_pred cccc------CCCCCHHHHHHHHHHcCcCcEEe
Confidence 1111 34689999999999876554444
|
| >d2b5ea3 c.47.1.2 (A:240-364) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.27 E-value=0.016 Score=43.56 Aligned_cols=90 Identities=16% Similarity=0.122 Sum_probs=58.6
Q ss_pred ChHHHHHHHHhcCCcccEEEEecCCh-------hHHHHHHHhhcCceeEEeeccc-chhhHhhcCCC-CCCeEEEecCCC
Q 020623 34 SDAEVSDFVENAGTFFPLFIGFGLDE-------SVMSNLALKYKKKAWFAVAKDF-SEDTMVLYDFD-KVPALVALQPSY 104 (323)
Q Consensus 34 s~~~l~~fl~~~~~~~~~vVgf~~~~-------~~f~~~A~~~~~~~~F~~~~~~-~~~~~~~~~~~-~~p~ivv~k~~~ 104 (323)
+.+...++++..- |+++-|.+.. ..|.++|++++..+.|.+++.. ...++..+|++ ..|.+++.....
T Consensus 6 ~~~~~~~y~~~~~---Pl~~~f~~~~~~~~~~~~~~~~vAk~fkgki~Fv~~D~~~~~~~l~~fgl~e~~P~~~i~~~~~ 82 (125)
T d2b5ea3 6 DGSVFAQYVESGL---PLGYLFYNDEEELEEYKPLFTELAKKNRGLMNFVSIDARKFGRHAGNLNMKEQFPLFAIHDMTE 82 (125)
T ss_dssp CHHHHHHHHHTTS---CEEEEEESSHHHHHHHHHHHHHHHHHTTTTCEEEEEEHHHHTTHHHHTTCCSCSSEEEEEETTT
T ss_pred CHHHHHHHHhcCC---CEEEEEeCChHHHHHHHHHHHHHHHHhcCeeEEEEEchHHhHHHHHHcCCCccCCcEEEEeccc
Confidence 4567778776543 5566554432 2678899999999999888421 22355667765 468888876432
Q ss_pred CCCccc-------------cCCCCHHHHHHHHHhh
Q 020623 105 NEHNIF-------------YGPFDEEFLEEFIKQN 126 (323)
Q Consensus 105 ~~~~~y-------------~g~~~~~~L~~fI~~~ 126 (323)
+.+..+ .++++.+.|.+|+++-
T Consensus 83 ~~ky~~~~~~~~~~~~~~~~~e~t~~~i~~F~~d~ 117 (125)
T d2b5ea3 83 DLKYGLPQLSEEAFDELSDKIVLESKAIESLVKDF 117 (125)
T ss_dssp TEEEECCCCCHHHHHTCCSCCCCCHHHHHHHHHHH
T ss_pred CcccccchhhhhhcccccccccCCHHHHHHHHHHH
Confidence 223222 2578999999999764
|
| >d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Phosducin domain: Phosducin species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.13 E-value=0.0086 Score=49.65 Aligned_cols=108 Identities=19% Similarity=0.330 Sum_probs=71.9
Q ss_pred CCCeeecC-hhhHHHhhc-CC--CcEEEEEEeCCChhHHHHHHHHHHHHHHhCCCeEEEEEcCcchhhHhhhcCCcCCCC
Q 020623 128 LPLSVPIN-QDTLNLLKD-DK--RKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSK 203 (323)
Q Consensus 128 ~Plv~~~t-~~~~~~~~~-~~--~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~l~F~~vd~~~~~~~~~~~gl~~~~~ 203 (323)
+..|.+++ .+.|..... .+ ..+++.|+.. .-..-..+-..|.++|++|+++.|+.++++.. .+...|++ ..
T Consensus 98 ~G~v~~i~~~~~f~~~v~~~~~~~~Vvvhfy~~-~~~~C~~~~~~l~~lA~~~~~vkF~ki~~~~~-~~~~~~~i---~~ 172 (217)
T d2trcp_ 98 YGFVYELETGEQFLETIEKEQKVTTIVVNIYED-GVRGCDALNSSLECLAAEYPMVKFCKIRASNT-GAGDRFSS---DV 172 (217)
T ss_dssp CCSEEECCSHHHHHHHHHHSCTTCEEEEEEECT-TSTTHHHHHHHHHHHHTTCTTSEEEEEEHHHH-TCSTTSCG---GG
T ss_pred CCeEEEcCCHHHHHHHHHhcCCCCeEEEEEEcC-CCCChhhhhhhHHHHhhhcccceEEEEccccc-hhHHhCCC---CC
Confidence 35688886 576765543 33 3455656653 33445677789999999999999999998753 34567777 57
Q ss_pred CCeEEEEeCCcc-eeeccCCCC-CCCCCCHHHHHHHHHHH
Q 020623 204 LPKMVVWDGNEN-YLTVIGSES-IDEEDQGSQISRFLEGY 241 (323)
Q Consensus 204 ~P~ivI~~~~~k-Y~~~~~~~~-~~~~~t~~~I~~Fi~~~ 241 (323)
+|+++++..... -.+. |..+ ..+.++.+.|..||.++
T Consensus 173 lPtl~~yk~G~~v~~~v-g~~~~~g~~~~~~~lE~~L~~~ 211 (217)
T d2trcp_ 173 LPTLLVYKGGELISNFI-SVAEQFAEDFFAADVESFLNEY 211 (217)
T ss_dssp CSEEEEEETTEEEEEET-TGGGGSCSSCCHHHHHHHHHTT
T ss_pred CCeEEEEECCEEEEEEE-CccccccccCCHHHHHHHHHHc
Confidence 999998875431 1111 2111 13468999999998754
|
| >d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: spliceosomal protein U5-15Kd domain: spliceosomal protein U5-15Kd species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.06 E-value=0.012 Score=45.02 Aligned_cols=72 Identities=18% Similarity=0.178 Sum_probs=55.1
Q ss_pred ecCChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeec-ccchhhHhhcCCCCCCeEEEec
Q 020623 31 ILNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAK-DFSEDTMVLYDFDKVPALVALQ 101 (323)
Q Consensus 31 ~i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~-~~~~~~~~~~~~~~~p~ivv~k 101 (323)
.|.|..+++..+..++.. +++|-|... .+.+.++|.++.+.+.|+.++ +..++++.+|++...|++++|+
T Consensus 6 ~l~s~~~~dq~i~~~~~k-~vvv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~VDvd~~~~la~~~~I~~~PT~~~f~ 84 (137)
T d1qgva_ 6 HLHNGWQVDQAILSEEDR-VVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYELYDPCTVMFFF 84 (137)
T ss_dssp BCCSHHHHHHHHHTCSSS-EEEEEEECTTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTCCTTTTSSCSCSSCEEEEEE
T ss_pred ccCCHHHHHHHHHhCCCC-EEEEEEECCCCccchhcChHHHHHHHHhhccceEEEeeccccchhhhhcCeeeEEEEEEEe
Confidence 477899999988754422 567777643 357889999998888887663 2467889999999999999998
Q ss_pred CC
Q 020623 102 PS 103 (323)
Q Consensus 102 ~~ 103 (323)
++
T Consensus 85 ~g 86 (137)
T d1qgva_ 85 RN 86 (137)
T ss_dssp TT
T ss_pred CC
Confidence 63
|
| >d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Txnl5-like domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.04 E-value=0.011 Score=44.07 Aligned_cols=90 Identities=16% Similarity=0.120 Sum_probs=60.9
Q ss_pred ecCChHHHHHHHHhcCCcccEEEEecCC---------------hhHHHHHHHhhcCceeEEeec--------ccchhhHh
Q 020623 31 ILNSDAEVSDFVENAGTFFPLFIGFGLD---------------ESVMSNLALKYKKKAWFAVAK--------DFSEDTMV 87 (323)
Q Consensus 31 ~i~s~~~l~~fl~~~~~~~~~vVgf~~~---------------~~~f~~~A~~~~~~~~F~~~~--------~~~~~~~~ 87 (323)
.|.+.+++.+.+++++-. +++|-|..+ .+.+.++|+.+.+++.|..++ +...+++.
T Consensus 5 ~v~~~~e~~~~l~~~~gk-~v~v~F~a~~~~~g~sWC~pCk~~~P~~~~l~~~~~~~~~~~~vdv~~~~~~~d~~~~l~~ 83 (119)
T d1woua_ 5 SVSGFEEFHRAVEQHNGK-TIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEGCVFIYCQVGEKPYWKDPNNDFRK 83 (119)
T ss_dssp EEESHHHHHHHHHTTTTS-EEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCTTEEEEEEECCCHHHHHCTTCHHHH
T ss_pred EeCCHHHHHHHHHHcCCC-EEEEEEEecCCCCCCCCChhHHHHHHHHHHHHHhcCCceEEEEEECCCCcccchhhhhHHH
Confidence 466889999988765422 567777431 237788898888888776663 12345777
Q ss_pred hcCCCCCCeEEEecCCCCCCc-cccCCCCHHHHHHHHH
Q 020623 88 LYDFDKVPALVALQPSYNEHN-IFYGPFDEEFLEEFIK 124 (323)
Q Consensus 88 ~~~~~~~p~ivv~k~~~~~~~-~y~g~~~~~~L~~fI~ 124 (323)
+|++.+.|++++|+++ ++. -+.+ .+.+.|+.|+.
T Consensus 84 ~~~V~~iPT~i~~~~g--~~l~~~~~-~~~~ll~~~~~ 118 (119)
T d1woua_ 84 NLKVTAVPTLLKYGTP--QKLVESEC-LQANLVEMLFS 118 (119)
T ss_dssp HHCCCSSSEEEETTSS--CEEEGGGG-GCHHHHHHHHH
T ss_pred hCCeEEEEEEEEEECC--eEEeeeec-CCHHHHHHHhc
Confidence 8999999999999863 322 2222 25677777775
|
| >d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: spliceosomal protein U5-15Kd domain: spliceosomal protein U5-15Kd species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.85 E-value=0.031 Score=42.67 Aligned_cols=74 Identities=18% Similarity=0.216 Sum_probs=55.1
Q ss_pred hhhHHHh-hc-CCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC-eEEEEEcCcchhhHhhhcCCcCCCCCCeEEEEeC
Q 020623 136 QDTLNLL-KD-DKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDG 212 (323)
Q Consensus 136 ~~~~~~~-~~-~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~-l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI~~~ 212 (323)
...+.+. .. .++++++-|... .-..-..+...|.++|+++++ +.|+.+|.++.+.+++.|++ ...|.+++...
T Consensus 10 ~~~~dq~i~~~~~k~vvv~F~a~-wC~~C~~~~p~l~~la~~~~~~v~~~~VDvd~~~~la~~~~I---~~~PT~~~f~~ 85 (137)
T d1qgva_ 10 GWQVDQAILSEEDRVVVIRFGHD-WDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYEL---YDPCTVMFFFR 85 (137)
T ss_dssp HHHHHHHHHTCSSSEEEEEEECT-TSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTCCTTTTSSCS---CSSCEEEEEET
T ss_pred HHHHHHHHHhCCCCEEEEEEECC-CCccchhcChHHHHHHHHhhccceEEEeeccccchhhhhcCe---eeEEEEEEEeC
Confidence 3344443 23 345666667653 223456788899999999998 99999999988889999999 58999998865
Q ss_pred C
Q 020623 213 N 213 (323)
Q Consensus 213 ~ 213 (323)
+
T Consensus 86 g 86 (137)
T d1qgva_ 86 N 86 (137)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: MJ0307, thioredoxin/glutaredoxin-like protein species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=95.77 E-value=0.012 Score=40.76 Aligned_cols=66 Identities=9% Similarity=0.217 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHhCCC-eEEEEEcCcchhhHhhhcCCcCCCCCCeEEEEeCCcceeeccCCCCCCCCCCHHHHHHHHHHHH
Q 020623 164 KLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEGYR 242 (323)
Q Consensus 164 ~~~~~l~~~A~~~~~-l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~~~~ 242 (323)
.+...+.++++.+++ +.++.+|.++.+.+++.||+ ..+|.+++ +.+++|. +..+.+.|.+||++.+
T Consensus 19 ~~~p~~~~~~~~~~~~~~~~~~~~d~~~~la~~~~V---~~~Pt~~i-~~~g~~~---------G~~~~~~l~~~i~~~L 85 (85)
T d1fo5a_ 19 AAKRVVEEVANEMPDAVEVEYINVMENPQKAMEYGI---MAVPTIVI-NGDVEFI---------GAPTKEALVEAIKKRL 85 (85)
T ss_dssp THHHHHHHHHHHCSSSEEEEEEESSSSCCTTTSTTT---CCSSEEEE-TTEEECC---------SSSSSHHHHHHHHHHC
T ss_pred hhhhhccccccccccccccccccccccccccccCCc---eEeeEEEE-ECCcEEE---------CCCCHHHHHHHHHhcC
Confidence 445677889999987 89999999888888999999 57899865 4455541 2357789999998763
|
| >d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: MTH807, thioredoxin/glutaredoxin-like protein species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=95.42 E-value=0.02 Score=39.60 Aligned_cols=63 Identities=19% Similarity=0.182 Sum_probs=49.5
Q ss_pred hHHHHHHHhhcCceeEEeecc-cchhhHhhcCCCCCCeEEEecCCCCCCccccCCCCHHHHHHHHHhhc
Q 020623 60 SVMSNLALKYKKKAWFAVAKD-FSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQNF 127 (323)
Q Consensus 60 ~~f~~~A~~~~~~~~F~~~~~-~~~~~~~~~~~~~~p~ivv~k~~~~~~~~y~g~~~~~~L~~fI~~~~ 127 (323)
+.+.++|.++.+++.|+..+. ...+++.+|++.+.|+++++. ...|.|..+.+.|.+||+++.
T Consensus 21 p~~~~l~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~~~~-----~~~~~G~~~~~~l~~~i~~~l 84 (85)
T d1nhoa_ 21 EVVDEAKKEFGDKIDVEKIDIMVDREKAIEYGLMAVPAIAING-----VVRFVGAPSREELFEAINDEM 84 (85)
T ss_dssp HHHHHHHHHHCSSCCEEEECTTTCGGGGGGTCSSCSSEEEETT-----TEEEECSSCCHHHHHHHHHHC
T ss_pred HHHhhhcccccccccccccccccchhhHHhcCceEeCEEEECC-----cEEEEcCCCHHHHHHHHHHhh
Confidence 578899999988887876642 367889999999999987733 234678888999999998763
|
| >d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Phosducin domain: Phosducin species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.39 E-value=0.018 Score=47.65 Aligned_cols=99 Identities=16% Similarity=0.182 Sum_probs=64.7
Q ss_pred CceecCChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeecccchhhHhhcCCCCCCeEEE
Q 020623 28 DVSILNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAKDFSEDTMVLYDFDKVPALVA 99 (323)
Q Consensus 28 ~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~~~~~~~~~~~~~~~~p~ivv 99 (323)
.|..|.+.+++.+.+.+.+....++|-|+.+ ...+..+|.+|. .+.|...+.....+..+|++...|++++
T Consensus 100 ~v~~i~~~~~f~~~v~~~~~~~~Vvvhfy~~~~~~C~~~~~~l~~lA~~~~-~vkF~ki~~~~~~~~~~~~i~~lPtl~~ 178 (217)
T d2trcp_ 100 FVYELETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEYP-MVKFCKIRASNTGAGDRFSSDVLPTLLV 178 (217)
T ss_dssp SEEECCSHHHHHHHHHHSCTTCEEEEEEECTTSTTHHHHHHHHHHHHTTCT-TSEEEEEEHHHHTCSTTSCGGGCSEEEE
T ss_pred eEEEcCCHHHHHHHHHhcCCCCeEEEEEEcCCCCChhhhhhhHHHHhhhcc-cceEEEEccccchhHHhCCCCCCCeEEE
Confidence 3888988888888887654222456666543 247889999886 4666555322222455778778899999
Q ss_pred ecCCCC-CCcc-c---cC-CCCHHHHHHHHHhhc
Q 020623 100 LQPSYN-EHNI-F---YG-PFDEEFLEEFIKQNF 127 (323)
Q Consensus 100 ~k~~~~-~~~~-y---~g-~~~~~~L~~fI~~~~ 127 (323)
|+++.- ...+ + -| +|+.++|+.||.++.
T Consensus 179 yk~G~~v~~~vg~~~~~g~~~~~~~lE~~L~~~g 212 (217)
T d2trcp_ 179 YKGGELISNFISVAEQFAEDFFAADVESFLNEYG 212 (217)
T ss_dssp EETTEEEEEETTGGGGSCSSCCHHHHHHHHHTTT
T ss_pred EECCEEEEEEECccccccccCCHHHHHHHHHHcC
Confidence 997421 1111 1 12 578899999998764
|
| >d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: MJ0307, thioredoxin/glutaredoxin-like protein species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=95.36 E-value=0.019 Score=39.52 Aligned_cols=62 Identities=21% Similarity=0.181 Sum_probs=47.1
Q ss_pred hHHHHHHHhhcCceeEEeec-ccchhhHhhcCCCCCCeEEEecCCCCCCccccCCCCHHHHHHHHHhh
Q 020623 60 SVMSNLALKYKKKAWFAVAK-DFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQN 126 (323)
Q Consensus 60 ~~f~~~A~~~~~~~~F~~~~-~~~~~~~~~~~~~~~p~ivv~k~~~~~~~~y~g~~~~~~L~~fI~~~ 126 (323)
..+.+++..+.+...+...+ +...+++.+|++.+.|++++++++ .+.|..+.++|.+||+++
T Consensus 22 p~~~~~~~~~~~~~~~~~~~~d~~~~la~~~~V~~~Pt~~i~~~g-----~~~G~~~~~~l~~~i~~~ 84 (85)
T d1fo5a_ 22 RVVEEVANEMPDAVEVEYINVMENPQKAMEYGIMAVPTIVINGDV-----EFIGAPTKEALVEAIKKR 84 (85)
T ss_dssp HHHHHHHHHCSSSEEEEEEESSSSCCTTTSTTTCCSSEEEETTEE-----ECCSSSSSHHHHHHHHHH
T ss_pred hhccccccccccccccccccccccccccccCCceEeeEEEEECCc-----EEECCCCHHHHHHHHHhc
Confidence 57888998887666554442 345678899999999999887642 245877889999999876
|
| >d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=95.10 E-value=0.072 Score=38.07 Aligned_cols=66 Identities=17% Similarity=0.160 Sum_probs=46.4
Q ss_pred hHHHHHHHh----hcCceeEEeec-ccchhhHhhcCCCCCCeEEEecCCCCCCccccCCCCHHHHHHHHHhh
Q 020623 60 SVMSNLALK----YKKKAWFAVAK-DFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQN 126 (323)
Q Consensus 60 ~~f~~~A~~----~~~~~~F~~~~-~~~~~~~~~~~~~~~p~ivv~k~~~~~~~~y~g~~~~~~L~~fI~~~ 126 (323)
..+.++|.. +...+.+...+ +..++++.+|++.+.|++++++++ +....+.|..+.+.|.+||++.
T Consensus 35 p~~~~la~~~~~~~~~~v~~~~id~~~~~~l~~~~~V~~vPTi~i~~~G-~~~~~~~G~~~~~~~~~~i~~a 105 (107)
T d1a8la2 35 RMAHKFAIENTKAGKGKILGDMVEAIEYPEWADQYNVMAVPKIVIQVNG-EDRVEFEGAYPEKMFLEKLLSA 105 (107)
T ss_dssp HHHHHHHHHHHHTTCCCEEEEEEEGGGCHHHHHHTTCCSSCEEEEEETT-EEEEEEESCCCHHHHHHHHHHH
T ss_pred hhHHhhhhhhhhccCCcEEEEEeccccccccccccccccceEEEEEeCC-eEEEEEECCCCHHHHHHHHHHh
Confidence 467777653 33334554442 235688999999999999998863 2334567999999999999874
|
| >d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) species: Escherichia coli [TaxId: 562]
Probab=95.03 E-value=0.16 Score=36.65 Aligned_cols=95 Identities=9% Similarity=0.165 Sum_probs=59.2
Q ss_pred ceecCChHHHHHHHHhcCCcccEEEEecCC--------hhHH---HHHHHhhcCceeEEee-c-c--cchhhHhhcCCCC
Q 020623 29 VSILNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVM---SNLALKYKKKAWFAVA-K-D--FSEDTMVLYDFDK 93 (323)
Q Consensus 29 v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f---~~~A~~~~~~~~F~~~-~-~--~~~~~~~~~~~~~ 93 (323)
...|.|.++++..+.+..- .+++|-|... ...+ .+++..+.+.....+. . + ...+++.++++.+
T Consensus 4 f~~i~~~~~~~~~l~~~~g-K~vlv~F~a~wC~~C~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~ 82 (117)
T d2fwha1 4 FTQIKTVDELNQALVEAKG-KPVMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQANVTANDAQDVALLKHLNVLG 82 (117)
T ss_dssp CEECCSHHHHHHHHHHHTT-SCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTTTSEEEEEECTTCCHHHHHHHHHTTCCS
T ss_pred ceEecCHHHHHHHHHHcCC-CeEEEEEecccCCcccccchhHHhHHHHHHhccceEEEecccccchhHHHHHHhhhehhh
Confidence 4668889999887765432 1678877643 1111 3444444432333222 1 1 2445778999999
Q ss_pred CCeEEEecCCCCCCc---cccCCCCHHHHHHHHHh
Q 020623 94 VPALVALQPSYNEHN---IFYGPFDEEFLEEFIKQ 125 (323)
Q Consensus 94 ~p~ivv~k~~~~~~~---~y~g~~~~~~L~~fI~~ 125 (323)
.|++++|.+ +++.. .+.|..+.+.|.+||++
T Consensus 83 ~Pt~~~~~~-~G~~~~~~~~~G~~~~~~~~~~l~~ 116 (117)
T d2fwha1 83 LPTILFFDG-QGQEHPQARVTGFMDAETFSAHLRD 116 (117)
T ss_dssp SSEEEEECT-TSCBCGGGCBCSCCCHHHHHHHHHH
T ss_pred ceEEEEEeC-CCcEEecccccccCCHHHHHHHHhc
Confidence 999999976 23222 34588899999999986
|
| >d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Txnl5-like domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5) species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.91 E-value=0.11 Score=38.28 Aligned_cols=95 Identities=11% Similarity=0.226 Sum_probs=61.1
Q ss_pred ChhhHHHhhc--CCCcEEEEEEeCCCh------hHHHHHHHHHHHHHHhCCC-eEEEEEcCcchh-------hHhhhcCC
Q 020623 135 NQDTLNLLKD--DKRKIVLAIVEDETE------EKSQKLVTTLKAAASANRE-LVFCYVGIKQFA-------DFADTFEA 198 (323)
Q Consensus 135 t~~~~~~~~~--~~~~~v~~f~~~~~~------e~~~~~~~~l~~~A~~~~~-l~F~~vd~~~~~-------~~~~~~gl 198 (323)
+.+.+..... .++++++.|....+. ..=+.+...+.++|+.+++ +.|+.+|.++.+ .++..||+
T Consensus 8 ~~~e~~~~l~~~~gk~v~v~F~a~~~~~g~sWC~pCk~~~P~~~~l~~~~~~~~~~~~vdv~~~~~~~d~~~~l~~~~~V 87 (119)
T d1woua_ 8 GFEEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEGCVFIYCQVGEKPYWKDPNNDFRKNLKV 87 (119)
T ss_dssp SHHHHHHHHHTTTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCTTEEEEEEECCCHHHHHCTTCHHHHHHCC
T ss_pred CHHHHHHHHHHcCCCEEEEEEEecCCCCCCCCChhHHHHHHHHHHHHHhcCCceEEEEEECCCCcccchhhhhHHHhCCe
Confidence 4445554443 346777777653111 1235677899999999997 999999985432 35667888
Q ss_pred cCCCCCCeEEEEeCCcceeeccCCCCCCCCCCHHHHHHHHH
Q 020623 199 NKKSKLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLE 239 (323)
Q Consensus 199 ~~~~~~P~ivI~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~ 239 (323)
..+|.+++++..++-- + ..-.+.+.|..|++
T Consensus 88 ---~~iPT~i~~~~g~~l~---~----~~~~~~~ll~~~~~ 118 (119)
T d1woua_ 88 ---TAVPTLLKYGTPQKLV---E----SECLQANLVEMLFS 118 (119)
T ss_dssp ---CSSSEEEETTSSCEEE---G----GGGGCHHHHHHHHH
T ss_pred ---EEEEEEEEEECCeEEe---e----eecCCHHHHHHHhc
Confidence 6899998877544321 1 01145677887875
|
| >d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) species: Escherichia coli [TaxId: 562]
Probab=91.73 E-value=1.1 Score=31.95 Aligned_cols=89 Identities=12% Similarity=0.142 Sum_probs=53.1
Q ss_pred CCCcEEEEEEeCCChhHHHHHHHH---HHHHHHhCCCeEEEEEcCc----chhhHhhhcCCcCCCCCCeEEEEeCCccee
Q 020623 145 DKRKIVLAIVEDETEEKSQKLVTT---LKAAASANRELVFCYVGIK----QFADFADTFEANKKSKLPKMVVWDGNENYL 217 (323)
Q Consensus 145 ~~~~~v~~f~~~~~~e~~~~~~~~---l~~~A~~~~~l~F~~vd~~----~~~~~~~~~gl~~~~~~P~ivI~~~~~kY~ 217 (323)
.++|+++-|... -=..=..+... ..++++...++.++.++.. ....++..+|+ ...|.+++++++++..
T Consensus 21 ~gK~vlv~F~a~-wC~~C~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v---~~~Pt~~~~~~~G~~~ 96 (117)
T d2fwha1 21 KGKPVMLDLYAD-WCVACKEFEKYTFSDPQVQKALADTVLLQANVTANDAQDVALLKHLNV---LGLPTILFFDGQGQEH 96 (117)
T ss_dssp TTSCEEEEEECT-TCHHHHHHHHHTTTSHHHHHHTTTSEEEEEECTTCCHHHHHHHHHTTC---CSSSEEEEECTTSCBC
T ss_pred CCCeEEEEEecc-cCCcccccchhHHhHHHHHHhccceEEEecccccchhHHHHHHhhheh---hhceEEEEEeCCCcEE
Confidence 467887777652 10111222222 3555666666666666653 23456788999 5789999999876432
Q ss_pred eccCCCCCCCCCCHHHHHHHHHH
Q 020623 218 TVIGSESIDEEDQGSQISRFLEG 240 (323)
Q Consensus 218 ~~~~~~~~~~~~t~~~I~~Fi~~ 240 (323)
... .+.+..+++.+.++|++
T Consensus 97 ~~~---~~~G~~~~~~~~~~l~~ 116 (117)
T d2fwha1 97 PQA---RVTGFMDAETFSAHLRD 116 (117)
T ss_dssp GGG---CBCSCCCHHHHHHHHHH
T ss_pred ecc---cccccCCHHHHHHHHhc
Confidence 110 01345788889888875
|
| >d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=91.70 E-value=0.97 Score=31.32 Aligned_cols=59 Identities=10% Similarity=0.077 Sum_probs=43.4
Q ss_pred hHHHHHHHhhcCceeEEeec-ccchhhHhhcCCCCCCeEEEecCCCCCCccccCCCCHHHHHHHHH
Q 020623 60 SVMSNLALKYKKKAWFAVAK-DFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIK 124 (323)
Q Consensus 60 ~~f~~~A~~~~~~~~F~~~~-~~~~~~~~~~~~~~~p~ivv~k~~~~~~~~y~g~~~~~~L~~fI~ 124 (323)
..+.++|..+. ++.|...+ +..++++.+|++.+.|++++ +...+|.|..+.++|.++|.
T Consensus 35 p~~~~~a~~~~-~i~~~~vd~~~~~~l~~~~~I~~vPt~~~-----ng~~~~~G~~~~~~l~~~le 94 (96)
T d1hyua4 35 QALNLMAVLNP-RIKHTAIDGGTFQNEITERNVMGVPAVFV-----NGKEFGQGRMTLTEIVAKVD 94 (96)
T ss_dssp HHHHHHHHHCT-TEEEEEEETTTCHHHHHHTTCCSSSEEEE-----TTEEEEESCCCHHHHHHHHC
T ss_pred HHHHHHHHhCC-ceEEEEEecccchHHHhhcccccccEEEE-----CCEEEEecCCCHHHHHHHHh
Confidence 46778887654 56666553 34678899999999999865 23345779889999999885
|
| >d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain species: Neisseria meningitidis serogroup A [TaxId: 65699]
Probab=87.94 E-value=0.84 Score=33.71 Aligned_cols=44 Identities=9% Similarity=0.153 Sum_probs=30.1
Q ss_pred HhhhcCCcCCCCCCeEEEEeCCcceeeccCCCCCCCCCCHHHHHHHHHHHHc
Q 020623 192 FADTFEANKKSKLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEGYRE 243 (323)
Q Consensus 192 ~~~~~gl~~~~~~P~ivI~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~~~~~ 243 (323)
+...||+ ...|..+|+|.+++..... .+..+.+.+.+++++..+
T Consensus 98 ~~~~~~v---~~~P~~~liD~~G~i~~~~-----~G~~~~~~~~~~l~~~~a 141 (143)
T d2fy6a1 98 IAQSLNI---SVYPSWALIGKDGDVQRIV-----KGSINEAQALALIRDPNA 141 (143)
T ss_dssp HHHHTTC---CSSSEEEEECTTSCEEEEE-----ESCCCHHHHHHHHHCTTS
T ss_pred HHHHcCC---CccCEEEEECCCCEEEEEE-----ECCCCHHHHHHHHHHHhc
Confidence 3456666 4689999999987432211 235788999999987543
|
| >d1st9a_ c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thiol-disulfide oxidoreductase ResA species: Bacillus subtilis [TaxId: 1423]
Probab=87.34 E-value=2.4 Score=30.81 Aligned_cols=41 Identities=15% Similarity=0.251 Sum_probs=28.5
Q ss_pred hHhhhcCCcCCCCCCeEEEEeCCcc--eeeccCCCCCCCCCCHHHHHHHHHHH
Q 020623 191 DFADTFEANKKSKLPKMVVWDGNEN--YLTVIGSESIDEEDQGSQISRFLEGY 241 (323)
Q Consensus 191 ~~~~~~gl~~~~~~P~ivI~~~~~k--Y~~~~~~~~~~~~~t~~~I~~Fi~~~ 241 (323)
.++..||+ ...|.++|+|.+++ |.. .+..+.+.+.++++.+
T Consensus 93 ~~~~~~~v---~~~P~~~liD~~G~i~~~~-------~G~~~~~~~~~~l~~l 135 (137)
T d1st9a_ 93 QVLDAYDV---SPLPTTFLINPEGKVVKVV-------TGTMTESMIHDYMNLI 135 (137)
T ss_dssp HHHHHTTC---CSSCEEEEECTTSEEEEEE-------ESCCCHHHHHHHHHHH
T ss_pred hhhhhhhc---cccceEEEECCCCEEEEEE-------ECCCCHHHHHHHHHhh
Confidence 34456676 46799999999873 333 2346888888888765
|
| >d1a8la1 c.47.1.2 (A:1-119) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=86.81 E-value=3.5 Score=29.84 Aligned_cols=88 Identities=13% Similarity=0.249 Sum_probs=55.9
Q ss_pred CCCcEE-EEEEeCCChhHHHHHHHHHHHHHHhCCCeEEEEEcCcc--hhhHhhhcCCcCCCCCCeEEEEeCCcce--eec
Q 020623 145 DKRKIV-LAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQ--FADFADTFEANKKSKLPKMVVWDGNENY--LTV 219 (323)
Q Consensus 145 ~~~~~v-~~f~~~~~~e~~~~~~~~l~~~A~~~~~l~F~~vd~~~--~~~~~~~~gl~~~~~~P~ivI~~~~~kY--~~~ 219 (323)
..+|+. ++|+..++.+..+++.+.++++|.--..+.+...+.+. .+..++.+|+ ...|+++|.+..+.| .+.
T Consensus 20 l~~pV~l~~~~~~~~~~~~~e~~~ll~ela~lSdki~~~~~~~~~~e~~~~~~~~~v---er~Ps~~i~~~g~~~gIrF~ 96 (119)
T d1a8la1 20 MVNPVKLIVFVRKDHCQYCDQLKQLVQELSELTDKLSYEIVDFDTPEGKELAKRYRI---DRAPATTITQDGKDFGVRYF 96 (119)
T ss_dssp CCSCEEEEEEECSSSCTTHHHHHHHHHHHHTTCTTEEEEEEETTSHHHHHHHHHTTC---CSSSEEEEEETTBCCSEEEE
T ss_pred CCCCEEEEEEecCCCchhHHHHHHHHHHHHhhCCCeEEEEeccCcchhhhHHHhhcc---ccCceEEEecCCcccceEEE
Confidence 357774 44554323344567888888888876667777766653 3457888999 579999998763211 121
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHH
Q 020623 220 IGSESIDEEDQGSQISRFLEGYR 242 (323)
Q Consensus 220 ~~~~~~~~~~t~~~I~~Fi~~~~ 242 (323)
| -...-.+..||.+++
T Consensus 97 -G------iP~GhEf~SlilaIl 112 (119)
T d1a8la1 97 -G------LPAGHEFAAFLEDIV 112 (119)
T ss_dssp -S------CCCTTHHHHHHHHHH
T ss_pred -e------ccCchhHHHHHHHHH
Confidence 2 134456778887765
|
| >d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Soluble secreted antigen MPT53 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=85.56 E-value=4.9 Score=28.96 Aligned_cols=88 Identities=13% Similarity=0.112 Sum_probs=46.2
Q ss_pred CCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCCeEEEEEcCcc----h------------------hhHhhhcCCcCCCC
Q 020623 146 KRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQ----F------------------ADFADTFEANKKSK 203 (323)
Q Consensus 146 ~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~l~F~~vd~~~----~------------------~~~~~~~gl~~~~~ 203 (323)
++++++.|...-- ..-......|.+++++++++.++.+.... . ..+...||+ ..
T Consensus 24 Gk~vll~F~a~wC-~~C~~~~p~l~~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~v---~~ 99 (134)
T d1lu4a_ 24 GKPAVLWFWTPWC-PFCNAEAPSLSQVAAANPAVTFVGIATRADVGAMQSFVSKYNLNFTNLNDADGVIWARYNV---PW 99 (134)
T ss_dssp TSCEEEEEECTTC-HHHHHHHHHHHHHHHHCTTSEEEEEECSSCHHHHHHHHHHHTCCSEEEECTTSHHHHHTTC---CS
T ss_pred CCEEEEEEeeccc-CCceecchhHHHHhhhhccccccccccccchhhhhhhhhhhccccceeeCchHHHHHHcCC---Cc
Confidence 4566655554211 11233445556666666664444444321 0 123445666 46
Q ss_pred CCeEEEEeCCcceeeccCCCCCCCCCCHHHHHHHHHH
Q 020623 204 LPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEG 240 (323)
Q Consensus 204 ~P~ivI~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~~ 240 (323)
.|.++|+|.+++-.+.... .+..+.+.|.+-|..
T Consensus 100 ~P~~~lid~~G~i~~v~~~---~g~~~~~~l~~~l~~ 133 (134)
T d1lu4a_ 100 QPAFVFYRADGTSTFVNNP---TAAMSQDELSGRVAA 133 (134)
T ss_dssp SSEEEEECTTSCEEEECCS---SSCCCHHHHHHHHHH
T ss_pred CCEEEEEeCCCeEEEEecc---CCCCCHHHHHHHHHc
Confidence 8999999987642221110 234677888776653
|
| >d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Lipoprotein DsbF species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=84.84 E-value=5.2 Score=28.64 Aligned_cols=86 Identities=15% Similarity=0.110 Sum_probs=48.4
Q ss_pred CCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCCeEEEEEcCcc----hh-------------------hHhhhcCCcCCC
Q 020623 146 KRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQ----FA-------------------DFADTFEANKKS 202 (323)
Q Consensus 146 ~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~l~F~~vd~~~----~~-------------------~~~~~~gl~~~~ 202 (323)
++++++-|....- ..-......|.+++++++++.++.+...+ .. .+...||+ .
T Consensus 25 Gk~vll~fwa~wC-~~C~~~~p~l~~l~~~~~~~~~v~v~~~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~v---~ 100 (134)
T d1zzoa1 25 GKPAVLWFWAPWC-PTCQGEAPVVGQVAASHPEVTFVGVAGLDQVPAMQEFVNKYPVKTFTQLADTDGSVWANFGV---T 100 (134)
T ss_dssp TSCEEEEEECTTC-HHHHHHHHHHHHHHHHCTTSEEEEEECSSCHHHHHHHHHHTTCTTSEEEECTTCHHHHHTTC---C
T ss_pred CCEEEEEeccccc-CcccccchhhHHHHhhhcccccccccccccchhHHHHHHhcCCcceeEEeeccchHHHhcCC---C
Confidence 5676666654211 12234456777777777764444333321 11 12234555 4
Q ss_pred CCCeEEEEeCCcceeeccCCCCCCCCCCHHHHHHHHHHH
Q 020623 203 KLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEGY 241 (323)
Q Consensus 203 ~~P~ivI~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~~~ 241 (323)
..|..+|+|.+++-.... +..+.+.|.+.|+.+
T Consensus 101 ~~P~~~iiD~~G~i~~~~------g~~~~~~l~~~i~~L 133 (134)
T d1zzoa1 101 QQPAYAFVDPHGNVDVVR------GRMSQDELTRRVTAL 133 (134)
T ss_dssp SSSEEEEECTTCCEEEEE------SCCCHHHHHHHHHHH
T ss_pred ccCeEEEECCCCeEEEEE------CCCCHHHHHHHHHhh
Confidence 689999999877432222 346788888888764
|
| >d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Probable thiol-disulfide isomerase/thioredoxin TTHA0593 species: Thermus thermophilus [TaxId: 274]
Probab=82.92 E-value=4.2 Score=31.56 Aligned_cols=52 Identities=13% Similarity=0.208 Sum_probs=34.1
Q ss_pred hhcCCcCCCCCCeEEEEeCCcceeeccCCCC----CCCCCCHHHHHHHHHHHHcCccccc
Q 020623 194 DTFEANKKSKLPKMVVWDGNENYLTVIGSES----IDEEDQGSQISRFLEGYREGRTEQK 249 (323)
Q Consensus 194 ~~~gl~~~~~~P~ivI~~~~~kY~~~~~~~~----~~~~~t~~~I~~Fi~~~~~Gkl~~~ 249 (323)
+.||+ ...|.++++|.+++-.+. |.-+ .....+...|..-|+++++|+..+.
T Consensus 109 ~~~~v---~~~P~~~liD~~G~i~y~-G~idd~~~~~~~~~~~~L~~Ai~~ll~g~~~~~ 164 (187)
T d2cvba1 109 KAYRA---LRTPEVFLFDERRLLRYH-GRVNDNPKDPSKVQSHDLEAAIEALLRGEEPPL 164 (187)
T ss_dssp HHTTC---CEESEEEEECTTCBEEEE-ECSSSCTTCGGGCCCCHHHHHHHHHHTTCCCCS
T ss_pred ccccc---cceeeEEEEcCCCeEEEE-eeecCCCCCCCCCCHHHHHHHHHHHHcCCCCCc
Confidence 34555 457999999998754332 2111 0124566789999999999986653
|
| >d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin-like structure containing protein C330018D20Rik species: Mouse (Mus musculus) [TaxId: 10090]
Probab=81.18 E-value=1.1 Score=31.34 Aligned_cols=83 Identities=7% Similarity=0.085 Sum_probs=50.7
Q ss_pred CCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCCeEEEEEcCcchhhHhhhcCCcCCCCCCeEEEEeCCcceeeccCCCC
Q 020623 145 DKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYLTVIGSES 224 (323)
Q Consensus 145 ~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI~~~~~kY~~~~~~~~ 224 (323)
...|.+++|... .=.-=+.+...|++++..+. ..++.+|.+..+.+.+.||+ + .|.+.| |.... ..
T Consensus 14 ~~~p~i~lft~~-~C~~C~~a~~~L~~~~~~~~-~~~v~vd~~~~~~l~~~y~~-~---VPvl~i-dg~~~--~~----- 79 (100)
T d1wjka_ 14 RALPVLTLFTKA-PCPLCDEAKEVLQPYKDRFI-LQEVDITLPENSTWYERYKF-D---IPVFHL-NGQFL--MM----- 79 (100)
T ss_dssp CCCCEEEEEECS-SCHHHHHHHHHTSTTSSSSE-EEEEETTSSTTHHHHHHSSS-S---CSEEEE-SSSEE--EE-----
T ss_pred CCCCEEEEEECC-CCCChHHHHHHHHHhhhhcc-eEEEecccccCHHHHHHhcc-c---CCceee-cCceE--Ee-----
Confidence 346777777642 11112445556666555554 56667777766778888988 3 797655 43322 21
Q ss_pred CCCCCCHHHHHHHHHHHHc
Q 020623 225 IDEEDQGSQISRFLEGYRE 243 (323)
Q Consensus 225 ~~~~~t~~~I~~Fi~~~~~ 243 (323)
..++.+.|.++|+.+..
T Consensus 80 --g~~d~~~L~~~L~~l~~ 96 (100)
T d1wjka_ 80 --HRVNTSKLEKQLRKLSG 96 (100)
T ss_dssp --SSCCHHHHHHHHHSSSC
T ss_pred --CCCCHHHHHHHHHHHhc
Confidence 23788999999987543
|
| >d1st9a_ c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thiol-disulfide oxidoreductase ResA species: Bacillus subtilis [TaxId: 1423]
Probab=80.84 E-value=4.9 Score=28.97 Aligned_cols=70 Identities=13% Similarity=0.318 Sum_probs=45.4
Q ss_pred EEEEec--CChhHHHHHHHhhcCceeEEeecccchhhHhhcCCCCCCeEEEecCCCCCCcc--ccCCCCHHHHHHHHH
Q 020623 51 LFIGFG--LDESVMSNLALKYKKKAWFAVAKDFSEDTMVLYDFDKVPALVALQPSYNEHNI--FYGPFDEEFLEEFIK 124 (323)
Q Consensus 51 ~vVgf~--~~~~~f~~~A~~~~~~~~F~~~~~~~~~~~~~~~~~~~p~ivv~k~~~~~~~~--y~g~~~~~~L~~fI~ 124 (323)
.+|+.. ++.+..++.+.++.-++.+.. +.+..++..|++.+.|+++++.+ +...+ +.|..+.+.|+++++
T Consensus 60 ~~v~i~~~~~~~~~~~~~~~~~~~~~~~~--d~~~~~~~~~~v~~~P~~~liD~--~G~i~~~~~G~~~~~~~~~~l~ 133 (137)
T d1st9a_ 60 EIVAVNVGESKIAVHNFMKSYGVNFPVVL--DTDRQVLDAYDVSPLPTTFLINP--EGKVVKVVTGTMTESMIHDYMN 133 (137)
T ss_dssp EEEEEEESCCHHHHHHHHHHTTCCSCEEE--ETTSHHHHHTTCCSSCEEEEECT--TSEEEEEEESCCCHHHHHHHHH
T ss_pred ccccccccchhhhHHHHHHHcCCCccccc--cccchhhhhhhccccceEEEECC--CCEEEEEEECCCCHHHHHHHHH
Confidence 566653 334455666666654443332 23456778899888999998875 34443 458888888888875
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