Citrus Sinensis ID: 020640

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320---
Protein Sequence
MISQWCRSQGIELPNSVQYINEEGITEADRDHFLSLLKKMSATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDGVHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTVNLTHTA
Secondary Structure (PSIPRED)
cHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccHHHHHHHHHHcccHHHHHHHcccccccccccHHHHHHHHHHHHHHcccccHHHHHHHccccHHHHHHHHHcccHHHHHHHHHHHHHHccccccHHHHcccccHHHHHHHHHcccHHHHHHHHHHHHHHcccccHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHcccHHHHHHHHHHHHHHHcccHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHccccccccccccccccccHccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccHHHHEEEEcccccHHHHHHHHccccccccccHHHHHHHHHHHHHHcccHHcHHHHHHcccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccHHEcccccHHHHHHHHHccccccHHHHHHHHHHHHHccccHHHHHHHccHHHHHHHHccccHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHHcccccccHHHHHHHHHHHHccccHHHHHHHHHccccHHHHHHHHcccHHHHHHHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
misqwcrsqgielpnsvqyineegiteaDRDHFLSLLKKMSATLPDQTEAAKELRLLTKRMpsfralfgeshdaipqllsplseskcenginpnlqEDVITTLLNLSihdnnkklvaetpMVIPLLMDALRSGTIETRSNAAAALFTLSAldsnkevigksgalkpLIDLLDEGHQSAMKDVASAIFNLCIthenkaravrdGGVSVILKKIMDGVHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTVNLTHTA
Flexible Loop (DISEMBL)
misqwcrsqgielpnsVQYINEEGITEADRDHFLSLLKKMSATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCIThenkaravrdgGVSVILKKIMDGVHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIREStcdrnkenCIAILHticlsdrtkWKAMReeesthgtisklaqdgtaraKRKAtgilerlkrtvnlthta
Low Complexity Region (SEG)
MISQWCRSQGIELPNSVQYINEEGITEADRDHFLSLLKKMSATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDGVHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTVNLTHTA
Disordered region (IsUnstruct)
*********GIELPNSVQYINEEGITEADRDHFLSLL**************************FRALFG********************GINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDGVHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWK********************************************
Disordered Region (DISOPRED)
MISQWCRSQG*********************HFLSLLKKMS******TEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKC***INPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDGVHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGT**AKRKATGILERL**********
Disordered Region (DISEMBL)
MISQWCRSQGIELPNSVQYINEEGITEADRDHFLSLLKKMSATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDGVHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKW***************************ATGILERLKRTVNLTHTA
Disordered Region (DISPRO)
MISQWCRSQGIELP*************ADRDHFLSLLKKMSATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDGVHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRT*******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MISQWCRSQGIELPNSVQYINEEGITEADRDHFLSLLKKMSATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDGVHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTVNLTHTA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	323	2.2.26 [Sep-21-2011]
Q9SRT0	460	U-box domain-containing p	no	no	0.978	0.686	0.644	1e-113
Q3E9F7	458	Putative U-box domain-con	no	no	0.962	0.679	0.444	3e-63
Q5VRH9	611	U-box domain-containing p	no	no	0.931	0.492	0.397	4e-49
Q8VZ40	632	U-box domain-containing p	no	no	0.947	0.484	0.401	2e-46
Q3E9F5	456	U-box domain-containing p	no	no	0.947	0.671	0.371	4e-45
Q3E9F6	445	Putative U-box domain-con	no	no	0.950	0.689	0.365	2e-44
Q8GUG9	612	U-box domain-containing p	no	no	0.938	0.495	0.379	2e-44
Q9SNC6	660	U-box domain-containing p	no	no	0.944	0.462	0.369	2e-43
Q9ZV31	654	U-box domain-containing p	no	no	0.938	0.463	0.373	1e-42
Q0IMG9	694	E3 ubiquitin-protein liga	no	no	0.947	0.440	0.383	4e-42

>sp|Q9SRT0|PUB9_ARATH U-box domain-containing protein 9 OS=Arabidopsis thaliana GN=PUB9 PE=1 SV=1

 Score =  407 bits (1046), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 214/332 (64%), Positives = 268/332 (80%), Gaps = 16/332 (4%)

Query: 1   MISQWCRSQGIELPNSVQY----INE-EGITEADRDHFLSLLKKMSAT-LPDQTEAAKEL 54
           MIS+WC+  G+E  +  QY    +NE E +T +DR+ F SLL K+S++ L DQ  AAKEL
Sbjct: 136 MISKWCKKNGLETKS--QYHPNLVNEDETVTRSDREIFNSLLCKVSSSNLQDQKSAAKEL 193

Query: 55  RLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPN--LQEDVITTLLNLSIHDN- 111
           RLLT++   FRALFGES D I +L++PL      +G NP+  LQEDV+TTLLN+SIHD+ 
Sbjct: 194 RLLTRKGTEFRALFGESPDEITRLVNPLL-----HGSNPDEKLQEDVVTTLLNISIHDDS 248

Query: 112 NKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLL 171
           NKKLV E P VIPLL+DALR GT+ TRSNAAAA+FTLSALDSNK +IGKSG LKPLIDLL
Sbjct: 249 NKKLVCENPNVIPLLIDALRRGTVATRSNAAAAIFTLSALDSNKVLIGKSGILKPLIDLL 308

Query: 172 DEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDGVHVDELLAILAMLSTN 231
           +EG+  A+KDVA+AIF LCI HEN++RAVRDG V V+ KKI +G++VDELLAILAML T+
Sbjct: 309 EEGNPLAIKDVAAAIFTLCIAHENRSRAVRDGAVRVLGKKISNGLYVDELLAILAMLVTH 368

Query: 232 HRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTI 291
            +AVEE+G+LGGVS +L+I RES C RNKEN I ILHTIC SDRTKWK ++EEE+ HGTI
Sbjct: 369 WKAVEELGELGGVSWLLKITRESECKRNKENAIVILHTICFSDRTKWKEIKEEENAHGTI 428

Query: 292 SKLAQDGTARAKRKATGILERLKRTVNLTHTA 323
           +KL+++GT+RA+RKA GIL+RL++ +NLTHTA
Sbjct: 429 TKLSREGTSRAQRKANGILDRLRKAMNLTHTA 460

Functions as an E3 ubiquitin ligase (By similarity). May be involved in the abscisic acid-mediated signaling pathway, at least during germination.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|Q3E9F7|PUB46_ARATH Putative U-box domain-containing protein 46 OS=Arabidopsis thaliana GN=PUB46 PE=3 SV=1

 Score =  242 bits (618), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 144/324 (44%), Positives = 206/324 (63%), Gaps = 13/324 (4%)

Query: 1   MISQWCRSQGIELPNSV--QYINEEGITEADRDHFLSLLKKMSAT--LPDQTEAAKELRL 56
           +I+QWC      L N    Q  ++E + E       +LL+++S++  + DQ EAAKELR 
Sbjct: 133 LITQWC------LVNKYDHQKPSDELVAELFTSDIEALLQRVSSSSSVADQIEAAKELRH 186

Query: 57  LTKRMPSFRALFGES-HDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKL 115
            TK+ P+ R  F    HD+I +LLSPLS        +  LQE+++T L NLSI ++NK +
Sbjct: 187 QTKKFPNVRVFFVAGIHDSITRLLSPLSTLDEAVDSSLELQENIVTALFNLSILESNKTV 246

Query: 116 VAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGH 175
           +AE  +VIPLL  +L+ GT ETR NAAA L +LSA+DSNK +IG S A+K LIDL++EG 
Sbjct: 247 IAENCLVIPLLTKSLKQGTDETRRNAAATLSSLSAIDSNKIIIGNSEAVKALIDLIEEGD 306

Query: 176 QSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDGVHVDELLAILAMLSTNHRAV 235
             A K+  S +FNLCI  ENK + V  G +    KKI  G +VDELL++LA++ST++RAV
Sbjct: 307 LLATKEATSTVFNLCIVLENKGKVVSAGLIHAATKKIKAGSNVDELLSLLALISTHNRAV 366

Query: 236 EEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTIC--LSDRTKWKAMREEESTHGTISK 293
           EE+  LG +  +  I+R+ +     EN + I+  +     DR++ K + EEE+ HGT +K
Sbjct: 367 EEMDKLGFIYDLFSILRKPSSLLTGENAVVIVFNMYDRNRDRSRLKVVGEEENQHGTFTK 426

Query: 294 LAQDGTARAKRKATGILERLKRTV 317
           LA+ G+ RA RKA GIL+ +KR V
Sbjct: 427 LAKQGSVRAARKAQGILQWIKRFV 450

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q5VRH9|PUB12_ORYSJ U-box domain-containing protein 12 OS=Oryza sativa subsp. japonica GN=PUB12 PE=2 SV=1

 Score =  195 bits (496), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 126/317 (39%), Positives = 190/317 (59%), Gaps = 16/317 (5%)

Query: 1   MISQWCRSQGIELPNSVQYI-NEEGITEADRDH--FLSLLKKM-SATLPDQTEAAKELRL 56
           +ISQWC + GIELP + Q   +++    +D DH   +SL+ ++ S    +Q  AA E+RL
Sbjct: 290 LISQWCEANGIELPKNKQNSRDKKAAKSSDYDHAGLVSLMNRLRSGNQDEQRAAAGEIRL 349

Query: 57  LTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLV 116
           L KR  + R    E+  AIP L++ LS S      +P  QE  +T LLNLSIH+NNK  +
Sbjct: 350 LAKRNVNNRICIAEA-GAIPLLVNLLSSS------DPRTQEHAVTALLNLSIHENNKASI 402

Query: 117 AETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQ 176
            ++   IP +++ L++G++ETR NAAA LF+LS +D NK  IG +GA+ PLI+LL +G  
Sbjct: 403 VDS-HAIPKIVEVLKTGSMETRENAAATLFSLSVVDENKVTIGAAGAIPPLINLLCDGSP 461

Query: 177 SAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMD--GVHVDELLAILAMLSTNHRA 234
              KD A+AIFNLCI   NK RAV+ G V  ++  ++D  G  +DE L++L++L+ N   
Sbjct: 462 RGKKDAATAIFNLCIYQGNKVRAVKAGIVIHLMNFLVDPTGGMIDEALSLLSILAGNPEG 521

Query: 235 VEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKL 294
              I     +  ++ +I+  +  RN+EN  AIL  +C +D T+     +       + +L
Sbjct: 522 KIVIARSEPIPPLVEVIKTGS-PRNRENAAAILWLLCSAD-TEQTLAAKAAGVEDALKEL 579

Query: 295 AQDGTARAKRKATGILE 311
           ++ GT RAKRKA+ ILE
Sbjct: 580 SETGTDRAKRKASSILE 596

Possesses E3 ubiquitin-protein ligase in vitro.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q8VZ40|PUB14_ARATH U-box domain-containing protein 14 OS=Arabidopsis thaliana GN=PUB14 PE=1 SV=1

 Score =  186 bits (473), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 130/324 (40%), Positives = 186/324 (57%), Gaps = 18/324 (5%)

Query: 1   MISQWCRSQGIELPNS-----VQYINEEGITEADRDHFLSLLKKMS-ATLPDQTEAAKEL 54
           +I+ WC S GIELP +        I     ++ DR   LSLL+K++  T   Q  AA EL
Sbjct: 310 LIALWCESNGIELPQNQGSCRTTKIGGSSSSDCDRTFVLSLLEKLANGTTEQQRAAAGEL 369

Query: 55  RLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKK 114
           RLL KR    R    E+  AIP L+  LS        +P  QE  +T LLNLSI++ NK 
Sbjct: 370 RLLAKRNVDNRVCIAEA-GAIPLLVELLSSP------DPRTQEHSVTALLNLSINEGNKG 422

Query: 115 LVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEG 174
            + +   +  + ++ L++G++E R NAAA LF+LS +D NK  IG +GA++ LI LL+EG
Sbjct: 423 AIVDAGAITDI-VEVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIQALISLLEEG 481

Query: 175 HQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMD--GVHVDELLAILAMLSTNH 232
            +   KD A+AIFNLCI   NK+RAV+ G V  + + + D  G  VDE LAILA+LSTN 
Sbjct: 482 TRRGKKDAATAIFNLCIYQGNKSRAVKGGIVDPLTRLLKDAGGGMVDEALAILAILSTNQ 541

Query: 233 RAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTIS 292
                I +   +  ++ IIR  +  RN+EN  AIL  +C+ +  +    R E      + 
Sbjct: 542 EGKTAIAEAESIPVLVEIIRTGS-PRNRENAAAILWYLCIGNIERLNVAR-EVGADVALK 599

Query: 293 KLAQDGTARAKRKATGILERLKRT 316
           +L ++GT RAKRKA  +LE +++T
Sbjct: 600 ELTENGTDRAKRKAASLLELIQQT 623

Functions as an E3 ubiquitin ligase with specific E2 ubiquitin-conjugating enzymes. Undergoes auto-ubiquitination.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q3E9F5|PUB48_ARATH U-box domain-containing protein 48 OS=Arabidopsis thaliana GN=PUB48 PE=2 SV=1

 Score =  182 bits (461), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 120/323 (37%), Positives = 186/323 (57%), Gaps = 17/323 (5%)

Query: 1   MISQWCRSQGIELP----NSVQYINEEGITEADRDHFLSLLKKMSA---TLPDQTEAAKE 53
           +I++WC +   + P    + + Y+     TE   D   SLL+++S+   ++ DQTEAAKE
Sbjct: 135 LITRWCLANKYDRPAPKPSDIDYV-----TELFTDGIESLLQRISSPSSSVADQTEAAKE 189

Query: 54  LRLLTKRMPSFRALF-GESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNN 112
           L L T++  + R  F  E  D+I +LL+PLS    E   NP LQE+++T L N+S  + N
Sbjct: 190 LALQTEKFVNVRDFFIKELPDSITRLLTPLSVLGDEVDSNPELQENIVTALFNMSTFEKN 249

Query: 113 KKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLD 172
           K ++AE   VIPLL  +++ G++ TR NA   L +LS +DSNK +IG S ALK LIDL+ 
Sbjct: 250 KTVLAENHQVIPLLAKSMKQGSVVTRRNATLTLASLSDIDSNKIIIGNSVALKALIDLIG 309

Query: 173 E-GHQSAMKDVASAIFNLCITH-ENKARAVRDGGVSVILKKIMDGVHVDELLAILAMLST 230
           E    SA  D   A+ +LC    EN  +A+  G     +K I    ++ E LA LA++S 
Sbjct: 310 ELDDLSATHDALCAVIDLCCDERENWKKAISLGLAPAAIKNIKARRNLFESLAALALISP 369

Query: 231 NHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKW--KAMREEESTH 288
           + R ++E+ +LG +  +L I+R+++C    EN + I+  +    R +   K + EEE+ H
Sbjct: 370 HERVIQEVANLGVIYDLLSILRKTSCMVTCENAVVIVGNMYAKSRERSIKKILAEEENQH 429

Query: 289 GTISKLAQDGTARAKRKATGILE 311
            T +K+A  G+  A  KA GIL+
Sbjct: 430 KTFTKIATQGSVVAVMKAQGILQ 452

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q3E9F6|PUB47_ARATH Putative U-box domain-containing protein 47 OS=Arabidopsis thaliana GN=PUB47 PE=3 SV=1

 Score =  179 bits (455), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 120/328 (36%), Positives = 180/328 (54%), Gaps = 21/328 (6%)

Query: 1   MISQWCRSQGIELPNSVQYINEEGITEADRDHFLSLLKKMSA--TLPDQTEAAKELRLLT 58
           +I +WC     + P +      + + +       SLL+++S+  ++ DQTEAAKEL L  
Sbjct: 126 VIKEWCLIHNFDRPKT-----SDEVIDLFTGDLESLLQRISSPSSVEDQTEAAKELALKA 180

Query: 59  KRMPSFRALF-GESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVA 117
           KR  S    F  +  D+I +LL+PLS S+     NP   E+++T L   S  + NK LVA
Sbjct: 181 KRFSSVCVYFVAKIPDSITRLLTPLSISE---DSNPEFLENIVTALHIFSTSEKNKTLVA 237

Query: 118 ETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQS 177
           E P+V+PLL   ++ GT+ TR ++AA + +LS  DSNK +IG S  LK LI +++EG   
Sbjct: 238 ENPLVLPLLAKYMKQGTVLTRIHSAATVNSLSYTDSNKIIIGNSEVLKALIHVIEEGDSL 297

Query: 178 AMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDGVHVDELLAILAMLST-NHRAVE 236
           A  +  SA+ NLC   E   +AV +G +   +KKI  G +V  LL++LA +ST NH+  E
Sbjct: 298 ATSEAFSALSNLCPVKEISEKAVSEGLIRAAIKKIKAGSNVSMLLSLLAFVSTQNHQTTE 357

Query: 237 EIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRT---------KWKAMREEEST 287
           E+ +LG +  +  I+R S    N EN + I++ IC S +          K   + EEE+ 
Sbjct: 358 EMDNLGLIYDLFSILRNSNSLVNDENAVVIVYNICKSYKALQNVVLREEKRDVVLEEENK 417

Query: 288 HGTISKLAQDGTARAKRKATGILERLKR 315
           HGT ++L      RA   A  ILE + R
Sbjct: 418 HGTFTRLENQEAGRATSLAKRILEWILR 445

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q8GUG9|PUB11_ARATH U-box domain-containing protein 11 OS=Arabidopsis thaliana GN=PUB11 PE=2 SV=2

 Score =  179 bits (455), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 121/319 (37%), Positives = 178/319 (55%), Gaps = 16/319 (5%)

Query: 1   MISQWCRSQGIELPNSVQYINEEGITEADRDHFLSLLKKMSA-TLPDQTEAAKELRLLTK 59
           +IS+WC    IE P    YIN       D     +L++++S+ +  D+  A  E+R L+K
Sbjct: 303 LISRWCAEHNIEQP--AGYINGRTKNSGDMSVIRALVQRLSSRSTEDRRNAVSEIRSLSK 360

Query: 60  RMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAET 119
           R    R L  E+  AIP L++ L+            QE+ IT +LNLSI++NNK+L+   
Sbjct: 361 RSTDNRILIAEAG-AIPVLVNLLTSEDVAT------QENAITCVLNLSIYENNKELIMFA 413

Query: 120 PMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAM 179
             V  ++   LR+GT+E R NAAA LF+LS  D NK +IG SGA+  L+DLL+ G     
Sbjct: 414 GAVTSIVQ-VLRAGTMEARENAAATLFSLSLADENKIIIGGSGAIPALVDLLENGTPRGK 472

Query: 180 KDVASAIFNLCITHENKARAVRDGGVSVILKKIMDGVH---VDELLAILAMLSTNHRAVE 236
           KD A+A+FNLCI H NK RAVR G V+ ++K + D      VDE L IL++L+ N  A  
Sbjct: 473 KDAATALFNLCIYHGNKGRAVRAGIVTALVKMLSDSTRHRMVDEALTILSVLANNQDAKS 532

Query: 237 EIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQ 296
            I     +  ++ I++     RN+EN  AIL ++C  D  K   +    +    +  L++
Sbjct: 533 AIVKANTLPALIGILQTDQT-RNRENAAAILLSLCKRDTEKLITIGRLGAVV-PLMDLSK 590

Query: 297 DGTARAKRKATGILERLKR 315
           +GT R KRKA  +LE L++
Sbjct: 591 NGTERGKRKAISLLELLRK 609

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9SNC6|PUB13_ARATH U-box domain-containing protein 13 OS=Arabidopsis thaliana GN=PUB13 PE=1 SV=1

 Score =  176 bits (447), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 119/322 (36%), Positives = 175/322 (54%), Gaps = 17/322 (5%)

Query: 1   MISQWCRSQGIELPNSVQYINEEGITE----ADRDHFLSLLKKMSATLP-DQTEAAKELR 55
           +I+QWC +  IE P     +    ++     A+ +    L+ +++   P DQ  AA E+R
Sbjct: 318 LIAQWCEANDIEPPKPPSSLRPRKVSSFSSPAEANKIEDLMWRLAYGNPEDQRSAAGEIR 377

Query: 56  LLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKL 115
           LL KR    R    E+  AIP L+  LS        +  +QE  +T LLNLSI +NNK  
Sbjct: 378 LLAKRNADNRVAIAEA-GAIPLLVGLLSTP------DSRIQEHSVTALLNLSICENNKGA 430

Query: 116 VAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGH 175
           +  +   IP ++  L+ G++E R NAAA LF+LS +D NK  IG  GA+ PL+ LL+EG 
Sbjct: 431 IV-SAGAIPGIVQVLKKGSMEARENAAATLFSLSVIDENKVTIGALGAIPPLVVLLNEGT 489

Query: 176 QSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMD--GVHVDELLAILAMLSTNHR 233
           Q   KD A+A+FNLCI   NK +A+R G +  + + + +     VDE LAILA+LS++  
Sbjct: 490 QRGKKDAATALFNLCIYQGNKGKAIRAGVIPTLTRLLTEPGSGMVDEALAILAILSSHPE 549

Query: 234 AVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISK 293
               IG    V  ++  IR  +  RN+EN  A+L  +C  D  +     ++    G +  
Sbjct: 550 GKAIIGSSDAVPSLVEFIRTGS-PRNRENAAAVLVHLCSGD-PQHLVEAQKLGLMGPLID 607

Query: 294 LAQDGTARAKRKATGILERLKR 315
           LA +GT R KRKA  +LER+ R
Sbjct: 608 LAGNGTDRGKRKAAQLLERISR 629

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9ZV31|PUB12_ARATH U-box domain-containing protein 12 OS=Arabidopsis thaliana GN=PUB12 PE=2 SV=1

 Score =  173 bits (439), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 123/329 (37%), Positives = 174/329 (52%), Gaps = 26/329 (7%)

Query: 1   MISQWCRSQGIELPN-----SVQYINEEGITEADRDH--FLSLLKKMSATLP-DQTEAAK 52
           +I+QWC S GIE P                +  D +H     LL K+++  P D+  AA 
Sbjct: 318 LIAQWCESNGIEPPKRPNISQPSSKASSSSSAPDDEHNKIEELLLKLTSQQPEDRRSAAG 377

Query: 53  ELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNN 112
           E+RLL K+    R     S  AIP L++ L+ S      +   QE  +T++LNLSI   N
Sbjct: 378 EIRLLAKQNNHNRVAIAAS-GAIPLLVNLLTISN-----DSRTQEHAVTSILNLSICQEN 431

Query: 113 KKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLD 172
           K  +  +   +P ++  L+ G++E R NAAA LF+LS +D NK  IG +GA+ PL+ LL 
Sbjct: 432 KGKIVYSSGAVPGIVHVLQKGSMEARENAAATLFSLSVIDENKVTIGAAGAIPPLVTLLS 491

Query: 173 EGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIM--DGVHVDELLAILAMLST 230
           EG Q   KD A+A+FNLCI   NK +AVR G V V+++ +   +   VDE L+ILA+LS+
Sbjct: 492 EGSQRGKKDAATALFNLCIFQGNKGKAVRAGLVPVLMRLLTEPESGMVDESLSILAILSS 551

Query: 231 NHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGT 290
           +     E+G    V  ++  IR S   RNKEN  A+L  +C      W      E+    
Sbjct: 552 HPDGKSEVGAADAVPVLVDFIR-SGSPRNKENSAAVLVHLC-----SWNQQHLIEAQKLG 605

Query: 291 ISKL----AQDGTARAKRKATGILERLKR 315
           I  L    A++GT R KRKA  +L R  R
Sbjct: 606 IMDLLIEMAENGTDRGKRKAAQLLNRFSR 634

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q0IMG9|SL11_ORYSJ E3 ubiquitin-protein ligase SPL11 OS=Oryza sativa subsp. japonica GN=SPL11 PE=1 SV=2

 Score =  172 bits (435), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 123/321 (38%), Positives = 179/321 (55%), Gaps = 15/321 (4%)

Query: 1   MISQWCRSQGIELPNSVQYINEE--GITEADRDHFLSLLKKM-SATLPDQTEAAKELRLL 57
           +ISQWC + G+E P      N+     + ++R +  +LL K+ S    +Q  AA ELRLL
Sbjct: 335 LISQWCETNGMEPPKRSTQPNKPTPACSSSERANIDALLSKLCSPDTEEQRSAAAELRLL 394

Query: 58  TKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVA 117
            KR  + R    E+  AIP LLS LS S          QE  +T LLNLSIH++NK  + 
Sbjct: 395 AKRNANNRICIAEA-GAIPLLLSLLSSSDLRT------QEHAVTALLNLSIHEDNKASII 447

Query: 118 ETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQS 177
            +   +P ++  L++G++E R NAAA LF+LS +D  K  IG  GA+  L+ LL EG Q 
Sbjct: 448 SS-GAVPSIVHVLKNGSMEARENAAATLFSLSVIDEYKVTIGGMGAIPALVVLLGEGSQR 506

Query: 178 AMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMD--GVHVDELLAILAMLSTNHRAV 235
             KD A+A+FNLCI   NK RA+R G V +I+  + +  G  +DE +AIL++LS++    
Sbjct: 507 GKKDAAAALFNLCIYQGNKGRAIRAGLVPLIMGLVTNPTGALMDEAMAILSILSSHPEGK 566

Query: 236 EEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEE-STHGTISKL 294
             IG    V  ++ +I   T  RN+EN  A++  +C  +       R +E      + +L
Sbjct: 567 AAIGAAEPVPVLVEMIGSGT-PRNRENAAAVMLHLCSGEHHLVHLARAQECGIMVPLREL 625

Query: 295 AQDGTARAKRKATGILERLKR 315
           A +GT R KRKA  +LER+ R
Sbjct: 626 ALNGTDRGKRKAVQLLERMSR 646

E3 ubiquitin-protein ligase that negatively regulates programmed cell death and disease resistance. Participates in flowering time control by mediating ubiquitination and subsequent proteasomal degradation of SPIN1.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	323
224065423	456	predicted protein [Populus trichocarpa]	1.0	0.708	0.801	1e-150
255585624	456	Spotted leaf protein, putative [Ricinus	1.0	0.708	0.761	1e-141
225469211	449	PREDICTED: U-box domain-containing prote	0.993	0.714	0.755	1e-139
225430672	455	PREDICTED: U-box domain-containing prote	0.993	0.705	0.724	1e-132
449453296	461	PREDICTED: U-box domain-containing prote	1.0	0.700	0.727	1e-132
356527306	461	PREDICTED: U-box domain-containing prote	1.0	0.700	0.736	1e-129
356567779	461	PREDICTED: U-box domain-containing prote	1.0	0.700	0.724	1e-126
255635837	323	unknown [Glycine max]	1.0	1.0	0.718	1e-125
224118828	450	predicted protein [Populus trichocarpa]	0.990	0.711	0.690	1e-125
388491812	453	unknown [Lotus japonicus]	0.990	0.706	0.671	1e-123

>gi|224065423|ref|XP_002301810.1| predicted protein [Populus trichocarpa] gi|222843536|gb|EEE81083.1| predicted protein [Populus trichocarpa]

 Score =  538 bits (1386), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 259/323 (80%), Positives = 294/323 (91%)

Query: 1   MISQWCRSQGIELPNSVQYINEEGITEADRDHFLSLLKKMSATLPDQTEAAKELRLLTKR 60
           MISQWC+SQG+ELP+  Q +NE+GITEADRDHFLSLL+KMS TLP+Q +AA+ELRLLTKR
Sbjct: 134 MISQWCKSQGLELPDLSQNVNEDGITEADRDHFLSLLEKMSLTLPEQKDAARELRLLTKR 193

Query: 61  MPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETP 120
           MPSFRALF ES +AIPQLL PLSE K  + + P+LQED+ITTLLNLSIHDNNKKLVAETP
Sbjct: 194 MPSFRALFSESLEAIPQLLRPLSEGKSGSSMYPDLQEDIITTLLNLSIHDNNKKLVAETP 253

Query: 121 MVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMK 180
           MVIPLLM+ALRSG+IETR+NAAAALFTLSALDSNK +IGKSGALKPLIDLL+EGH SAMK
Sbjct: 254 MVIPLLMEALRSGSIETRTNAAAALFTLSALDSNKTLIGKSGALKPLIDLLEEGHPSAMK 313

Query: 181 DVASAIFNLCITHENKARAVRDGGVSVILKKIMDGVHVDELLAILAMLSTNHRAVEEIGD 240
           DVASAIFNLCI HENKARAVRDG + VIL KIM+G+HVDELLAILA+L+++ + VEE+GD
Sbjct: 314 DVASAIFNLCIIHENKARAVRDGALKVILTKIMNGMHVDELLAILAVLASHQKVVEELGD 373

Query: 241 LGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTA 300
            G V C+LRIIRESTCDRNKENCIAILHTICL+DRTKWK MR+EES++GTISKLA+ GT+
Sbjct: 374 SGAVPCLLRIIRESTCDRNKENCIAILHTICLNDRTKWKVMRDEESSYGTISKLARHGTS 433

Query: 301 RAKRKATGILERLKRTVNLTHTA 323
           RAKRKA GILERL R VNLTHTA
Sbjct: 434 RAKRKANGILERLNRAVNLTHTA 456

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255585624|ref|XP_002533499.1| Spotted leaf protein, putative [Ricinus communis] gi|223526643|gb|EEF28886.1| Spotted leaf protein, putative [Ricinus communis]

 Score =  506 bits (1303), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 246/323 (76%), Positives = 287/323 (88%)

Query: 1   MISQWCRSQGIELPNSVQYINEEGITEADRDHFLSLLKKMSATLPDQTEAAKELRLLTKR 60
           MISQWC++QG+ELP+ V+  N EGITEA+RD FLSL+ KMS+ LP+Q  AAKELR LTKR
Sbjct: 134 MISQWCKNQGLELPDPVRQGNGEGITEAERDQFLSLVGKMSSELPEQRAAAKELRRLTKR 193

Query: 61  MPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETP 120
           MPSFRALFGES DAIPQLL+PL  SK  + +  +LQEDVITTLLNLSIHDNNKKLVAETP
Sbjct: 194 MPSFRALFGESVDAIPQLLNPLLASKSASEVQADLQEDVITTLLNLSIHDNNKKLVAETP 253

Query: 121 MVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMK 180
            VIPLL++ALRSGTI+TR+NAAAALFTLSALDSNK +IGKSGALKPLIDLL+EGH  AMK
Sbjct: 254 AVIPLLIEALRSGTIDTRTNAAAALFTLSALDSNKSLIGKSGALKPLIDLLEEGHPLAMK 313

Query: 181 DVASAIFNLCITHENKARAVRDGGVSVILKKIMDGVHVDELLAILAMLSTNHRAVEEIGD 240
           DVASAIF LC  HENKARAVRDG V V+LKKIMDG+ VDELLA+LA+LS++H+A+EE+G+
Sbjct: 314 DVASAIFTLCFVHENKARAVRDGAVRVLLKKIMDGMLVDELLAMLAILSSHHKAIEEMGE 373

Query: 241 LGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTA 300
           LG V C+LRIIRE++C+RNKENCIAILHTIC +DRTKWK +REEE+ +GTISKLA++GT+
Sbjct: 374 LGAVPCLLRIIRENSCERNKENCIAILHTICSNDRTKWKTVREEENAYGTISKLAREGTS 433

Query: 301 RAKRKATGILERLKRTVNLTHTA 323
           RAKRKA GILE+L R VNLTHTA
Sbjct: 434 RAKRKANGILEKLNRIVNLTHTA 456

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225469211|ref|XP_002263607.1| PREDICTED: U-box domain-containing protein 9 [Vitis vinifera] gi|296083515|emb|CBI23501.3| unnamed protein product [Vitis vinifera]

 Score =  501 bits (1289), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 244/323 (75%), Positives = 285/323 (88%), Gaps = 2/323 (0%)

Query: 1   MISQWCRSQGIELPNSVQYINEEGITEADRDHFLSLLKKMSATLPDQTEAAKELRLLTKR 60
           MISQWC+S GIEL +  QY NE+ I +ADR  F+ LL+KMS++  +Q EAAKELRLLTKR
Sbjct: 129 MISQWCQSHGIELTDPDQYSNEDQIMDADRSRFIDLLEKMSSSALEQKEAAKELRLLTKR 188

Query: 61  MPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETP 120
           MPSFRALFGES DAIPQLL+P S++K   GI+P+LQED+ITTLLNLSIHDNNKKLVAETP
Sbjct: 189 MPSFRALFGESLDAIPQLLNPFSQNK--GGIHPDLQEDLITTLLNLSIHDNNKKLVAETP 246

Query: 121 MVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMK 180
           MVIPLLMDAL+SGTIETRSNAAA +FTLSALDSNK +IGKSG LKPLIDLL+EGH S MK
Sbjct: 247 MVIPLLMDALKSGTIETRSNAAATIFTLSALDSNKALIGKSGVLKPLIDLLEEGHPSVMK 306

Query: 181 DVASAIFNLCITHENKARAVRDGGVSVILKKIMDGVHVDELLAILAMLSTNHRAVEEIGD 240
           DVASAIFNLCI HENK+RAV +G V V++KKIM+  HVDELLAILAMLST+ +A+EE+GD
Sbjct: 307 DVASAIFNLCIIHENKSRAVHEGAVKVLMKKIMNQTHVDELLAILAMLSTHQKAIEEMGD 366

Query: 241 LGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTA 300
           LG VSC+L IIRES+CDRNKENCIAILH++CL+DRTK + +REEE+T+ TISKL+Q GTA
Sbjct: 367 LGAVSCLLTIIRESSCDRNKENCIAILHSVCLNDRTKLRELREEENTYRTISKLSQTGTA 426

Query: 301 RAKRKATGILERLKRTVNLTHTA 323
           RAKRKA GILERL+R +N+THTA
Sbjct: 427 RAKRKANGILERLRRALNITHTA 449

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225430672|ref|XP_002270882.1| PREDICTED: U-box domain-containing protein 9 [Vitis vinifera] gi|296085175|emb|CBI28670.3| unnamed protein product [Vitis vinifera]

 Score =  479 bits (1232), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 234/323 (72%), Positives = 277/323 (85%), Gaps = 2/323 (0%)

Query: 1   MISQWCRSQGIELPNSVQYINEEGITEADRDHFLSLLKKMSATLPDQTEAAKELRLLTKR 60
           MIS+WC+  GIELP  V+ ++EE IT+ADR H  SLL++MS++  DQ EAA+ELRLLTKR
Sbjct: 135 MISEWCKEHGIELPKPVEDVDEEVITDADRGHLNSLLERMSSSASDQKEAARELRLLTKR 194

Query: 61  MPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETP 120
           MPSFRALFGE  DA+PQLLSPLS    +  ++P LQED+ITT+LNLSIHDNNKKLVAE P
Sbjct: 195 MPSFRALFGECTDAVPQLLSPLSPDAVD--VDPELQEDLITTVLNLSIHDNNKKLVAEDP 252

Query: 121 MVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMK 180
           M IP+L+++L+SGTIETR+NAAAALFTLSALDSNK +IGKSGALKPL+DLL+EGH  AMK
Sbjct: 253 MAIPVLIESLKSGTIETRTNAAAALFTLSALDSNKLIIGKSGALKPLLDLLEEGHPLAMK 312

Query: 181 DVASAIFNLCITHENKARAVRDGGVSVILKKIMDGVHVDELLAILAMLSTNHRAVEEIGD 240
           DVASAIFNLCI  ENK RAV DG V+VILKKIMDG+ VDELLAILAMLS++ RAVEE+G+
Sbjct: 313 DVASAIFNLCIVLENKGRAVHDGAVTVILKKIMDGILVDELLAILAMLSSHQRAVEEMGE 372

Query: 241 LGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTA 300
           LG V C+LRIIRES C+RNKENCIAILHT+C +DR K +A+REEE+ +GTIS+LAQ GT+
Sbjct: 373 LGAVPCLLRIIRESKCERNKENCIAILHTVCFNDRAKLRAIREEENDYGTISRLAQTGTS 432

Query: 301 RAKRKATGILERLKRTVNLTHTA 323
           RAKRKA GILERL R   +THTA
Sbjct: 433 RAKRKANGILERLNRVALITHTA 455

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449453296|ref|XP_004144394.1| PREDICTED: U-box domain-containing protein 9-like [Cucumis sativus] gi|449506075|ref|XP_004162645.1| PREDICTED: U-box domain-containing protein 9-like [Cucumis sativus]

 Score =  476 bits (1225), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 238/327 (72%), Positives = 279/327 (85%), Gaps = 4/327 (1%)

Query: 1   MISQWCRSQGIELPNSVQ--YINEEGITEADRDHFLSLLKKMSATLPDQTEAAKELRLLT 58
           MISQWC ++GIEL + V+  Y++++ ITEADRD FL LL+KMS T+ +Q EAAKELR+LT
Sbjct: 135 MISQWCATRGIELQDRVRVHYLDDDVITEADRDRFLMLLEKMSLTVSEQKEAAKELRMLT 194

Query: 59  KRMPSFRALFGESHDAIPQLLSPL--SESKCENGINPNLQEDVITTLLNLSIHDNNKKLV 116
           KRMPSFRALFGES DAI  LLSPL   +S+  + I+ +LQEDVITTLLNLSIHDNNKKLV
Sbjct: 195 KRMPSFRALFGESLDAISLLLSPLCGDKSQSSSSIHTDLQEDVITTLLNLSIHDNNKKLV 254

Query: 117 AETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQ 176
           AETP  IPLLM+ALRSGT+ETRSNAAAALFTLSALD NK +IGK+GALKPLI+LLD GH 
Sbjct: 255 AETPYAIPLLMEALRSGTMETRSNAAAALFTLSALDPNKTIIGKAGALKPLIELLDLGHP 314

Query: 177 SAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDGVHVDELLAILAMLSTNHRAVE 236
            ++KD ASAIFNLCI HENKARAVRDG V V+LKKIM  +HVDELLAILAMLS + RA+E
Sbjct: 315 LSIKDAASAIFNLCILHENKARAVRDGAVRVLLKKIMSQMHVDELLAILAMLSCHQRAIE 374

Query: 237 EIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQ 296
           EIG+LG V  +LRIIRES+C RNKENCI I+H++CL DRTKWK MREEE  + TIS+LAQ
Sbjct: 375 EIGELGAVPFLLRIIRESSCSRNKENCIVIIHSVCLYDRTKWKDMREEEKCYRTISELAQ 434

Query: 297 DGTARAKRKATGILERLKRTVNLTHTA 323
           +GT+RAKRKA+GILER+ R VN+THTA
Sbjct: 435 NGTSRAKRKASGILERINRVVNMTHTA 461

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356527306|ref|XP_003532252.1| PREDICTED: U-box domain-containing protein 9-like [Glycine max]

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 238/323 (73%), Positives = 276/323 (85%)

Query: 1   MISQWCRSQGIELPNSVQYINEEGITEADRDHFLSLLKKMSATLPDQTEAAKELRLLTKR 60
           MI QW ++QGIEL N+VQYI+EEG+ EADR+HFL LLKKMS+TL DQ  AAKELRLLTK+
Sbjct: 139 MIEQWSKNQGIELSNTVQYIDEEGLNEADREHFLCLLKKMSSTLSDQKTAAKELRLLTKK 198

Query: 61  MPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETP 120
            P FR LF +S DAIPQLL P+  S     ++P+LQEDVITTLLN+SIHDNNKKLVAETP
Sbjct: 199 YPCFRVLFCDSADAIPQLLKPICGSDSFGSVHPDLQEDVITTLLNISIHDNNKKLVAETP 258

Query: 121 MVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMK 180
           MVIPLLM ALRSGTIETRSNAAAALFTLSALDSNKE+IGKSG LKPLIDLL+EGH  AMK
Sbjct: 259 MVIPLLMRALRSGTIETRSNAAAALFTLSALDSNKELIGKSGVLKPLIDLLEEGHPLAMK 318

Query: 181 DVASAIFNLCITHENKARAVRDGGVSVILKKIMDGVHVDELLAILAMLSTNHRAVEEIGD 240
           DVASAIFN+C+ HENKARA +DG V VIL KI   +HV ELLAILA+LS++ RAV ++GD
Sbjct: 319 DVASAIFNICVMHENKARAEKDGAVRVILAKINKQIHVAELLAILALLSSHQRAVHDMGD 378

Query: 241 LGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTA 300
           LG V  +LRIIRES+C+RNKENC+AIL TICL DR+K K +REEE++H TIS+LA+ GT+
Sbjct: 379 LGAVPSLLRIIRESSCERNKENCVAILQTICLYDRSKLKEIREEENSHKTISELAKHGTS 438

Query: 301 RAKRKATGILERLKRTVNLTHTA 323
           RAKRKA+GILERL R VN+THTA
Sbjct: 439 RAKRKASGILERLNRAVNITHTA 461

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356567779|ref|XP_003552093.1| PREDICTED: U-box domain-containing protein 9-like [Glycine max]

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 234/323 (72%), Positives = 275/323 (85%)

Query: 1   MISQWCRSQGIELPNSVQYINEEGITEADRDHFLSLLKKMSATLPDQTEAAKELRLLTKR 60
           MI QW ++QGIE  N+VQYI+EEG+ +AD +HFL LLKKMS+TL DQ  AAKELRLLTK+
Sbjct: 139 MIEQWSKNQGIEFSNTVQYIDEEGLNKADCEHFLCLLKKMSSTLSDQKTAAKELRLLTKK 198

Query: 61  MPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETP 120
            P FR LF +S DAIPQLL P+  S     ++P+LQEDVITTLLN+SIHDNNKKLVAETP
Sbjct: 199 HPCFRVLFCDSADAIPQLLKPICGSDSFGSVHPDLQEDVITTLLNISIHDNNKKLVAETP 258

Query: 121 MVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMK 180
           MVIPLLM ALRSGTIETRSNAAAALFTLSALDSNKE+IGKSGALKPLIDLL+EGH  AMK
Sbjct: 259 MVIPLLMRALRSGTIETRSNAAAALFTLSALDSNKELIGKSGALKPLIDLLEEGHPLAMK 318

Query: 181 DVASAIFNLCITHENKARAVRDGGVSVILKKIMDGVHVDELLAILAMLSTNHRAVEEIGD 240
           DVASAIFN+C+ HENKARAV+DG V VIL KI   +HV ELLAILA+LS++  AV ++GD
Sbjct: 319 DVASAIFNICVMHENKARAVKDGAVRVILAKINKQIHVAELLAILALLSSHQSAVHDMGD 378

Query: 241 LGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTA 300
           LG V  +LRII+ES+C+RNKENC+AIL TICL DR+K K +REEE+ H TIS+LA++GT+
Sbjct: 379 LGAVPSLLRIIKESSCERNKENCVAILQTICLYDRSKLKEIREEENGHKTISELAKNGTS 438

Query: 301 RAKRKATGILERLKRTVNLTHTA 323
           RAKRKA+GILERL R V++THTA
Sbjct: 439 RAKRKASGILERLNRVVHITHTA 461

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255635837|gb|ACU18266.1| unknown [Glycine max]

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 232/323 (71%), Positives = 273/323 (84%)

Query: 1   MISQWCRSQGIELPNSVQYINEEGITEADRDHFLSLLKKMSATLPDQTEAAKELRLLTKR 60
           MI QW ++QGIE  N+VQYI+EEG+ +AD +HFL LLKKMS+TL DQ  AAKELRLLTK+
Sbjct: 1   MIEQWSKNQGIEFSNTVQYIDEEGLNKADCEHFLCLLKKMSSTLSDQKTAAKELRLLTKK 60

Query: 61  MPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETP 120
            P FR LF +S DAIPQLL P+  S     ++P+LQEDVI TLLN+SIHDNNKKLVAETP
Sbjct: 61  HPCFRVLFCDSADAIPQLLKPICGSDSFGSVHPDLQEDVIATLLNISIHDNNKKLVAETP 120

Query: 121 MVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMK 180
           MVIPLLM ALRSGTIETRSNAAAALFTLSALDSNKE+IGKSGALKPLIDLL+EGH  AMK
Sbjct: 121 MVIPLLMRALRSGTIETRSNAAAALFTLSALDSNKELIGKSGALKPLIDLLEEGHPLAMK 180

Query: 181 DVASAIFNLCITHENKARAVRDGGVSVILKKIMDGVHVDELLAILAMLSTNHRAVEEIGD 240
           DVASAIFN+C+ HENKARAV+DG V VIL KI   +HV ELLAILA+LS++  AV ++GD
Sbjct: 181 DVASAIFNICVMHENKARAVKDGAVRVILAKINKQIHVAELLAILALLSSHQSAVHDMGD 240

Query: 241 LGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTA 300
           LG V  +LRII+ES+C+RNKENC+AIL TICL DR+K K +REEE+ H TI +LA++GT+
Sbjct: 241 LGAVPSLLRIIKESSCERNKENCVAILQTICLYDRSKLKEIREEENGHKTIFELAKNGTS 300

Query: 301 RAKRKATGILERLKRTVNLTHTA 323
           RAKRKA+GILERL R V++THTA
Sbjct: 301 RAKRKASGILERLNRVVHITHTA 323

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224118828|ref|XP_002331359.1| predicted protein [Populus trichocarpa] gi|222874397|gb|EEF11528.1| predicted protein [Populus trichocarpa]

 Score =  453 bits (1166), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 223/323 (69%), Positives = 275/323 (85%), Gaps = 3/323 (0%)

Query: 1   MISQWCRSQGIELPNSVQYINEEGITEADRDHFLSLLKKMSATLPDQTEAAKELRLLTKR 60
           MISQWC+ +GIELP  V+ ++E   T+ADR H  SLL+KMS++L DQ EAAKELRLLTKR
Sbjct: 131 MISQWCKERGIELPRPVKDVDEVR-TDADRGHLKSLLEKMSSSLSDQKEAAKELRLLTKR 189

Query: 61  MPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETP 120
           MPSFRALF +S DAIP+LL+PLS  +     +P+LQED+ITT+LNLSIHDNNK+L AE P
Sbjct: 190 MPSFRALFSDSTDAIPKLLNPLSPGRA--NTHPDLQEDLITTVLNLSIHDNNKRLAAENP 247

Query: 121 MVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMK 180
           +VIPLL+++++SGTIETRSNAAAA+F+LSALDSNK +IGKSGALKPLIDLL+EGH  AMK
Sbjct: 248 LVIPLLVESVKSGTIETRSNAAAAIFSLSALDSNKLIIGKSGALKPLIDLLEEGHPLAMK 307

Query: 181 DVASAIFNLCITHENKARAVRDGGVSVILKKIMDGVHVDELLAILAMLSTNHRAVEEIGD 240
           D ASAIFNLC+  ENK RAVR+G V VILKKIMD + VDELLAILAML+++ +AVEE+G+
Sbjct: 308 DAASAIFNLCLVLENKGRAVREGAVRVILKKIMDCIFVDELLAILAMLASHQKAVEEMGE 367

Query: 241 LGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTA 300
           LG V C+L IIRES+ +RNKENC+AILHTICL+D +KW+ +REEE+ +GT+S+LA+ GT+
Sbjct: 368 LGAVHCLLGIIRESSSERNKENCVAILHTICLNDYSKWRDIREEENANGTLSRLAESGTS 427

Query: 301 RAKRKATGILERLKRTVNLTHTA 323
           RAKRKA  ILERL R  +LTHTA
Sbjct: 428 RAKRKANSILERLNRAASLTHTA 450

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388491812|gb|AFK33972.1| unknown [Lotus japonicus]

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 217/323 (67%), Positives = 270/323 (83%), Gaps = 3/323 (0%)

Query: 1   MISQWCRSQGIELPNSVQYINEEGITEADRDHFLSLLKKMSATLPDQTEAAKELRLLTKR 60
           MI QW + QG+E PN+V YINEE I EAD DHFL LL+KMS+TL DQ  AAKELRLLTK+
Sbjct: 134 MIEQWSKKQGLESPNTVPYINEEAIKEADSDHFLCLLEKMSSTLSDQKAAAKELRLLTKK 193

Query: 61  MPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETP 120
            P +RALF ++ D IPQLL P+ ES   N ++ +L+EDVITTLLN+SIHD+NKK VAETP
Sbjct: 194 HPCYRALFADTEDGIPQLLKPICES---NSLDSDLREDVITTLLNISIHDSNKKPVAETP 250

Query: 121 MVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMK 180
           MVIPLLM ALR+GTIETRSNAAAA+FTLSALDSNKE+IGKS ALKPLI+LL+EGH   MK
Sbjct: 251 MVIPLLMKALRTGTIETRSNAAAAIFTLSALDSNKELIGKSDALKPLIELLEEGHPLTMK 310

Query: 181 DVASAIFNLCITHENKARAVRDGGVSVILKKIMDGVHVDELLAILAMLSTNHRAVEEIGD 240
           DV+SAIF++C+ HEN+ARAV+DG V VIL K+ + +HV E LAILA+LST+H AV+++G+
Sbjct: 311 DVSSAIFSICLIHENRARAVKDGAVRVILTKVKNRIHVAESLAILALLSTHHTAVQDMGE 370

Query: 241 LGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTA 300
           LG V  +L I+RE +C+R+KENC+AIL  ICL DR+K K +R+EE++H TIS+LA+ GT+
Sbjct: 371 LGAVPSLLSIMREGSCERSKENCVAILQAICLYDRSKLKEVRDEENSHRTISELARTGTS 430

Query: 301 RAKRKATGILERLKRTVNLTHTA 323
           RAKRKATGIL+RL + VN+THTA
Sbjct: 431 RAKRKATGILDRLNKIVNITHTA 453

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	323
TAIR|locus:2079706	460	PUB9 "plant U-box 9" [Arabidop	0.984	0.691	0.642	1.4e-103
TAIR|locus:2146183	458	AT5G18320 [Arabidopsis thalian	0.969	0.683	0.440	1.7e-59
TAIR|locus:2082682	632	PUB14 "plant U-box 14" [Arabid	0.965	0.493	0.396	1.3e-50
UNIPROTKB|Q5VRH9	611	PUB12 "U-box domain-containing	0.931	0.492	0.397	9.5e-50
TAIR|locus:2146213	456	AT5G18340 [Arabidopsis thalian	0.959	0.679	0.373	1.6e-45
TAIR|locus:2017719	612	AT1G23030 [Arabidopsis thalian	0.938	0.495	0.382	2.1e-45
UNIPROTKB|Q0IMG9	694	SPL11 "E3 ubiquitin-protein li	0.947	0.440	0.386	3.8e-45
TAIR|locus:2146198	445	AT5G18330 [Arabidopsis thalian	0.950	0.689	0.371	6.4e-44
TAIR|locus:2075140	660	PUB13 "plant U-box 13" [Arabid	0.941	0.460	0.371	1.9e-43
TAIR|locus:2013990	628	AT1G71020 [Arabidopsis thalian	0.950	0.488	0.365	3.2e-42

TAIR|locus:2079706 PUB9 "plant U-box 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 1026 (366.2 bits), Expect = 1.4e-103, P = 1.4e-103
 Identities = 212/330 (64%), Positives = 266/330 (80%)

Query:     1 MISQWCRSQGIELPNSVQ--YINE-EGITEADRDHFLSLLKKMSAT-LPDQTEAAKELRL 56
             MIS+WC+  G+E  +      +NE E +T +DR+ F SLL K+S++ L DQ  AAKELRL
Sbjct:   136 MISKWCKKNGLETKSQYHPNLVNEDETVTRSDREIFNSLLCKVSSSNLQDQKSAAKELRL 195

Query:    57 LTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPN--LQEDVITTLLNLSIHDN-NK 113
             LT++   FRALFGES D I +L++PL      +G NP+  LQEDV+TTLLN+SIHD+ NK
Sbjct:   196 LTRKGTEFRALFGESPDEITRLVNPLL-----HGSNPDEKLQEDVVTTLLNISIHDDSNK 250

Query:   114 KLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDE 173
             KLV E P VIPLL+DALR GT+ TRSNAAAA+FTLSALDSNK +IGKSG LKPLIDLL+E
Sbjct:   251 KLVCENPNVIPLLIDALRRGTVATRSNAAAAIFTLSALDSNKVLIGKSGILKPLIDLLEE 310

Query:   174 GHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDGVHVDELLAILAMLSTNHR 233
             G+  A+KDVA+AIF LCI HEN++RAVRDG V V+ KKI +G++VDELLAILAML T+ +
Sbjct:   311 GNPLAIKDVAAAIFTLCIAHENRSRAVRDGAVRVLGKKISNGLYVDELLAILAMLVTHWK 370

Query:   234 AVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISK 293
             AVEE+G+LGGVS +L+I RES C RNKEN I ILHTIC SDRTKWK ++EEE+ HGTI+K
Sbjct:   371 AVEELGELGGVSWLLKITRESECKRNKENAIVILHTICFSDRTKWKEIKEEENAHGTITK 430

Query:   294 LAQDGTARAKRKATGILERLKRTVNLTHTA 323
             L+++GT+RA+RKA GIL+RL++ +NLTHTA
Sbjct:   431 LSREGTSRAQRKANGILDRLRKAMNLTHTA 460

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;IDA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005737 "cytoplasm" evidence=ISM

GO:0016567 "protein ubiquitination" evidence=IEA;IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0070696 "transmembrane receptor protein serine/threonine kinase binding" evidence=IPI

GO:0071215 "cellular response to abscisic acid stimulus" evidence=IMP

GO:0046777 "protein autophosphorylation" evidence=RCA

TAIR|locus:2146183 AT5G18320 [Arabidopsis thaliana (taxid:3702)]

 Score = 610 (219.8 bits), Expect = 1.7e-59, P = 1.7e-59
 Identities = 142/322 (44%), Positives = 205/322 (63%)

Query:     1 MISQWCRSQGIELPNSVQYINEEGITEADRDHFLSLLKKMSAT--LPDQTEAAKELRLLT 58
             +I+QWC     +     Q  ++E + E       +LL+++S++  + DQ EAAKELR  T
Sbjct:   133 LITQWCLVNKYDH----QKPSDELVAELFTSDIEALLQRVSSSSSVADQIEAAKELRHQT 188

Query:    59 KRMPSFRALFGES-HDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVA 117
             K+ P+ R  F    HD+I +LLSPLS        +  LQE+++T L NLSI ++NK ++A
Sbjct:   189 KKFPNVRVFFVAGIHDSITRLLSPLSTLDEAVDSSLELQENIVTALFNLSILESNKTVIA 248

Query:   118 ETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQS 177
             E  +VIPLL  +L+ GT ETR NAAA L +LSA+DSNK +IG S A+K LIDL++EG   
Sbjct:   249 ENCLVIPLLTKSLKQGTDETRRNAAATLSSLSAIDSNKIIIGNSEAVKALIDLIEEGDLL 308

Query:   178 AMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDGVHVDELLAILAMLSTNHRAVEE 237
             A K+  S +FNLCI  ENK + V  G +    KKI  G +VDELL++LA++ST++RAVEE
Sbjct:   309 ATKEATSTVFNLCIVLENKGKVVSAGLIHAATKKIKAGSNVDELLSLLALISTHNRAVEE 368

Query:   238 IGDLGGVSCMLRIIRESTCDRNKENCIAILHTIC--LSDRTKWKAMREEESTHGTISKLA 295
             +  LG +  +  I+R+ +     EN + I+  +     DR++ K + EEE+ HGT +KLA
Sbjct:   369 MDKLGFIYDLFSILRKPSSLLTGENAVVIVFNMYDRNRDRSRLKVVGEEENQHGTFTKLA 428

Query:   296 QDGTARAKRKATGILERLKRTV 317
             + G+ RA RKA GIL+ +KR V
Sbjct:   429 KQGSVRAARKAQGILQWIKRFV 450

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0016567 "protein ubiquitination" evidence=IEA

TAIR|locus:2082682 PUB14 "plant U-box 14" [Arabidopsis thaliana (taxid:3702)]

 Score = 526 (190.2 bits), Expect = 1.3e-50, P = 1.3e-50
 Identities = 131/330 (39%), Positives = 188/330 (56%)

Query:     1 MISQWCRSQGIELPNS-----VQYINEEGITEADRDHFLSLLKKMS-ATLPDQTEAAKEL 54
             +I+ WC S GIELP +        I     ++ DR   LSLL+K++  T   Q  AA EL
Sbjct:   310 LIALWCESNGIELPQNQGSCRTTKIGGSSSSDCDRTFVLSLLEKLANGTTEQQRAAAGEL 369

Query:    55 RLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKK 114
             RLL KR    R    E+  AIP L+  LS        +P  QE  +T LLNLSI++ NK 
Sbjct:   370 RLLAKRNVDNRVCIAEA-GAIPLLVELLSSP------DPRTQEHSVTALLNLSINEGNKG 422

Query:   115 LVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEG 174
              + +   +  ++ + L++G++E R NAAA LF+LS +D NK  IG +GA++ LI LL+EG
Sbjct:   423 AIVDAGAITDIV-EVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIQALISLLEEG 481

Query:   175 HQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMD--GVHVDELLAILAMLSTNH 232
              +   KD A+AIFNLCI   NK+RAV+ G V  + + + D  G  VDE LAILA+LSTN 
Sbjct:   482 TRRGKKDAATAIFNLCIYQGNKSRAVKGGIVDPLTRLLKDAGGGMVDEALAILAILSTNQ 541

Query:   233 RAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTIS 292
                  I +   +  ++ IIR  +  RN+EN  AIL  +C+ +  +    RE       + 
Sbjct:   542 EGKTAIAEAESIPVLVEIIRTGS-PRNRENAAAILWYLCIGNIERLNVAREV-GADVALK 599

Query:   293 KLAQDGTARAKRKATGILERLKRTVNLTHT 322
             +L ++GT RAKRKA  +LE +++T  +  T
Sbjct:   600 ELTENGTDRAKRKAASLLELIQQTEGVAVT 629

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;IDA

GO:0005871 "kinesin complex" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA;ISS

GO:0019894 "kinesin binding" evidence=IEA

GO:0070696 "transmembrane receptor protein serine/threonine kinase binding" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

GO:0046777 "protein autophosphorylation" evidence=RCA

UNIPROTKB|Q5VRH9 PUB12 "U-box domain-containing protein 12" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 518 (187.4 bits), Expect = 9.5e-50, P = 9.5e-50
 Identities = 126/317 (39%), Positives = 190/317 (59%)

Query:     1 MISQWCRSQGIELPNSVQYINEEGITEA-DRDH--FLSLLKKM-SATLPDQTEAAKELRL 56
             +ISQWC + GIELP + Q   ++   ++ D DH   +SL+ ++ S    +Q  AA E+RL
Sbjct:   290 LISQWCEANGIELPKNKQNSRDKKAAKSSDYDHAGLVSLMNRLRSGNQDEQRAAAGEIRL 349

Query:    57 LTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLV 116
             L KR  + R    E+  AIP L++ LS S      +P  QE  +T LLNLSIH+NNK  +
Sbjct:   350 LAKRNVNNRICIAEA-GAIPLLVNLLSSS------DPRTQEHAVTALLNLSIHENNKASI 402

Query:   117 AETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQ 176
              ++   IP +++ L++G++ETR NAAA LF+LS +D NK  IG +GA+ PLI+LL +G  
Sbjct:   403 VDSH-AIPKIVEVLKTGSMETRENAAATLFSLSVVDENKVTIGAAGAIPPLINLLCDGSP 461

Query:   177 SAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMD--GVHVDELLAILAMLSTNHRA 234
                KD A+AIFNLCI   NK RAV+ G V  ++  ++D  G  +DE L++L++L+ N   
Sbjct:   462 RGKKDAATAIFNLCIYQGNKVRAVKAGIVIHLMNFLVDPTGGMIDEALSLLSILAGNPEG 521

Query:   235 VEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKL 294
                I     +  ++ +I+  +  RN+EN  AIL  +C +D T+     +       + +L
Sbjct:   522 KIVIARSEPIPPLVEVIKTGS-PRNRENAAAILWLLCSAD-TEQTLAAKAAGVEDALKEL 579

Query:   295 AQDGTARAKRKATGILE 311
             ++ GT RAKRKA+ ILE
Sbjct:   580 SETGTDRAKRKASSILE 596

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IDA

TAIR|locus:2146213 AT5G18340 [Arabidopsis thaliana (taxid:3702)]

 Score = 478 (173.3 bits), Expect = 1.6e-45, P = 1.6e-45
 Identities = 119/319 (37%), Positives = 187/319 (58%)

Query:     1 MISQWCRSQGIELPNSVQYINEEGITEADRDHFLSLLKKMSA---TLPDQTEAAKELRLL 57
             +I++WC +   + P + +  + + +TE   D   SLL+++S+   ++ DQTEAAKEL L 
Sbjct:   135 LITRWCLANKYDRP-APKPSDIDYVTELFTDGIESLLQRISSPSSSVADQTEAAKELALQ 193

Query:    58 TKRMPSFRALF-GESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLV 116
             T++  + R  F  E  D+I +LL+PLS    E   NP LQE+++T L N+S  + NK ++
Sbjct:   194 TEKFVNVRDFFIKELPDSITRLLTPLSVLGDEVDSNPELQENIVTALFNMSTFEKNKTVL 253

Query:   117 AETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDE-GH 175
             AE   VIPLL  +++ G++ TR NA   L +LS +DSNK +IG S ALK LIDL+ E   
Sbjct:   254 AENHQVIPLLAKSMKQGSVVTRRNATLTLASLSDIDSNKIIIGNSVALKALIDLIGELDD 313

Query:   176 QSAMKDVASAIFNLCITH-ENKARAVRDGGVSVILKKIMDGVHVDELLAILAMLSTNHRA 234
              SA  D   A+ +LC    EN  +A+  G     +K I    ++ E LA LA++S + R 
Sbjct:   314 LSATHDALCAVIDLCCDERENWKKAISLGLAPAAIKNIKARRNLFESLAALALISPHERV 373

Query:   235 VEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKW--KAMREEESTHGTIS 292
             ++E+ +LG +  +L I+R+++C    EN + I+  +    R +   K + EEE+ H T +
Sbjct:   374 IQEVANLGVIYDLLSILRKTSCMVTCENAVVIVGNMYAKSRERSIKKILAEEENQHKTFT 433

Query:   293 KLAQDGTARAKRKATGILE 311
             K+A  G+  A  KA GIL+
Sbjct:   434 KIATQGSVVAVMKAQGILQ 452

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0016567 "protein ubiquitination" evidence=IEA

TAIR|locus:2017719 AT1G23030 [Arabidopsis thaliana (taxid:3702)]

 Score = 477 (173.0 bits), Expect = 2.1e-45, P = 2.1e-45
 Identities = 122/319 (38%), Positives = 179/319 (56%)

Query:     1 MISQWCRSQGIELPNSVQYINEEGITEADRDHFLSLLKKMSA-TLPDQTEAAKELRLLTK 59
             +IS+WC    IE P    YIN       D     +L++++S+ +  D+  A  E+R L+K
Sbjct:   303 LISRWCAEHNIEQPAG--YINGRTKNSGDMSVIRALVQRLSSRSTEDRRNAVSEIRSLSK 360

Query:    60 RMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAET 119
             R    R L  E+  AIP L++ L+            QE+ IT +LNLSI++NNK+L+   
Sbjct:   361 RSTDNRILIAEA-GAIPVLVNLLTSEDVAT------QENAITCVLNLSIYENNKELIMFA 413

Query:   120 PMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAM 179
               V  ++   LR+GT+E R NAAA LF+LS  D NK +IG SGA+  L+DLL+ G     
Sbjct:   414 GAVTSIVQ-VLRAGTMEARENAAATLFSLSLADENKIIIGGSGAIPALVDLLENGTPRGK 472

Query:   180 KDVASAIFNLCITHENKARAVRDGGVSVILKKIMDGV-H--VDELLAILAMLSTNHRAVE 236
             KD A+A+FNLCI H NK RAVR G V+ ++K + D   H  VDE L IL++L+ N  A  
Sbjct:   473 KDAATALFNLCIYHGNKGRAVRAGIVTALVKMLSDSTRHRMVDEALTILSVLANNQDAKS 532

Query:   237 EIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQ 296
              I     +  ++ I++     RN+EN  AIL ++C  D  K   +    +    +  L++
Sbjct:   533 AIVKANTLPALIGILQTDQT-RNRENAAAILLSLCKRDTEKLITIGRLGAVV-PLMDLSK 590

Query:   297 DGTARAKRKATGILERLKR 315
             +GT R KRKA  +LE L++
Sbjct:   591 NGTERGKRKAISLLELLRK 609

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0010200 "response to chitin" evidence=IEP

UNIPROTKB|Q0IMG9 SPL11 "E3 ubiquitin-protein ligase SPL11" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 476 (172.6 bits), Expect = 3.8e-45, P = 3.8e-45
 Identities = 124/321 (38%), Positives = 179/321 (55%)

Query:     1 MISQWCRSQGIELPNSVQYINEE--GITEADRDHFLSLLKKM-SATLPDQTEAAKELRLL 57
             +ISQWC + G+E P      N+     + ++R +  +LL K+ S    +Q  AA ELRLL
Sbjct:   335 LISQWCETNGMEPPKRSTQPNKPTPACSSSERANIDALLSKLCSPDTEEQRSAAAELRLL 394

Query:    58 TKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVA 117
              KR  + R    E+  AIP LLS LS S          QE  +T LLNLSIH++NK  + 
Sbjct:   395 AKRNANNRICIAEA-GAIPLLLSLLSSSDLRT------QEHAVTALLNLSIHEDNKASII 447

Query:   118 ETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQS 177
              +  V P ++  L++G++E R NAAA LF+LS +D  K  IG  GA+  L+ LL EG Q 
Sbjct:   448 SSGAV-PSIVHVLKNGSMEARENAAATLFSLSVIDEYKVTIGGMGAIPALVVLLGEGSQR 506

Query:   178 AMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMD--GVHVDELLAILAMLSTNHRAV 235
               KD A+A+FNLCI   NK RA+R G V +I+  + +  G  +DE +AIL++LS++    
Sbjct:   507 GKKDAAAALFNLCIYQGNKGRAIRAGLVPLIMGLVTNPTGALMDEAMAILSILSSHPEGK 566

Query:   236 EEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEE-STHGTISKL 294
               IG    V  ++ +I   T  RN+EN  A++  +C  +       R +E      + +L
Sbjct:   567 AAIGAAEPVPVLVEMIGSGT-PRNRENAAAVMLHLCSGEHHLVHLARAQECGIMVPLREL 625

Query:   295 AQDGTARAKRKATGILERLKR 315
             A +GT R KRKA  +LER+ R
Sbjct:   626 ALNGTDRGKRKAVQLLERMSR 646

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0031348 "negative regulation of defense response" evidence=IMP

GO:0043069 "negative regulation of programmed cell death" evidence=IMP

GO:0048586 "regulation of long-day photoperiodism, flowering" evidence=IMP

TAIR|locus:2146198 AT5G18330 [Arabidopsis thaliana (taxid:3702)]

 Score = 463 (168.0 bits), Expect = 6.4e-44, P = 6.4e-44
 Identities = 122/328 (37%), Positives = 183/328 (55%)

Query:     1 MISQWCRSQGIELPNSVQYINEEGITEADRDHFLSLLKKMSA--TLPDQTEAAKELRLLT 58
             +I +WC     + P +   + +  +   D +   SLL+++S+  ++ DQTEAAKEL L  
Sbjct:   126 VIKEWCLIHNFDRPKTSDEVID--LFTGDLE---SLLQRISSPSSVEDQTEAAKELALKA 180

Query:    59 KRMPSFRALF-GESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVA 117
             KR  S    F  +  D+I +LL+PLS S  E+  NP   E+++T L   S  + NK LVA
Sbjct:   181 KRFSSVCVYFVAKIPDSITRLLTPLSIS--EDS-NPEFLENIVTALHIFSTSEKNKTLVA 237

Query:   118 ETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQS 177
             E P+V+PLL   ++ GT+ TR ++AA + +LS  DSNK +IG S  LK LI +++EG   
Sbjct:   238 ENPLVLPLLAKYMKQGTVLTRIHSAATVNSLSYTDSNKIIIGNSEVLKALIHVIEEGDSL 297

Query:   178 AMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDGVHVDELLAILAMLST-NHRAVE 236
             A  +  SA+ NLC   E   +AV +G +   +KKI  G +V  LL++LA +ST NH+  E
Sbjct:   298 ATSEAFSALSNLCPVKEISEKAVSEGLIRAAIKKIKAGSNVSMLLSLLAFVSTQNHQTTE 357

Query:   237 EIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRT---------KWKAMREEEST 287
             E+ +LG +  +  I+R S    N EN + I++ IC S +          K   + EEE+ 
Sbjct:   358 EMDNLGLIYDLFSILRNSNSLVNDENAVVIVYNICKSYKALQNVVLREEKRDVVLEEENK 417

Query:   288 HGTISKLAQDGTARAKRKATGILERLKR 315
             HGT ++L      RA   A  ILE + R
Sbjct:   418 HGTFTRLENQEAGRATSLAKRILEWILR 445

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0016567 "protein ubiquitination" evidence=IEA

TAIR|locus:2075140 PUB13 "plant U-box 13" [Arabidopsis thaliana (taxid:3702)]

 Score = 459 (166.6 bits), Expect = 1.9e-43, P = 1.9e-43
 Identities = 120/323 (37%), Positives = 176/323 (54%)

Query:     1 MISQWCRSQGIELPNSVQYINEEGITE----ADRDHFLSLLKKMSATLP-DQTEAAKELR 55
             +I+QWC +  IE P     +    ++     A+ +    L+ +++   P DQ  AA E+R
Sbjct:   318 LIAQWCEANDIEPPKPPSSLRPRKVSSFSSPAEANKIEDLMWRLAYGNPEDQRSAAGEIR 377

Query:    56 LLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKL 115
             LL KR    R    E+  AIP L+  LS        +  +QE  +T LLNLSI +NNK  
Sbjct:   378 LLAKRNADNRVAIAEA-GAIPLLVGLLSTP------DSRIQEHSVTALLNLSICENNKGA 430

Query:   116 VAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGH 175
             +      IP ++  L+ G++E R NAAA LF+LS +D NK  IG  GA+ PL+ LL+EG 
Sbjct:   431 IVSAG-AIPGIVQVLKKGSMEARENAAATLFSLSVIDENKVTIGALGAIPPLVVLLNEGT 489

Query:   176 QSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMD---GVHVDELLAILAMLSTNH 232
             Q   KD A+A+FNLCI   NK +A+R G +  + + + +   G+ VDE LAILA+LS++ 
Sbjct:   490 QRGKKDAATALFNLCIYQGNKGKAIRAGVIPTLTRLLTEPGSGM-VDEALAILAILSSHP 548

Query:   233 RAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTIS 292
                  IG    V  ++  IR  +  RN+EN  A+L  +C  D  +     ++    G + 
Sbjct:   549 EGKAIIGSSDAVPSLVEFIRTGS-PRNRENAAAVLVHLCSGD-PQHLVEAQKLGLMGPLI 606

Query:   293 KLAQDGTARAKRKATGILERLKR 315
              LA +GT R KRKA  +LER+ R
Sbjct:   607 DLAGNGTDRGKRKAAQLLERISR 629

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0016567 "protein ubiquitination" evidence=IEA;IDA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0070696 "transmembrane receptor protein serine/threonine kinase binding" evidence=IPI

GO:0042742 "defense response to bacterium" evidence=IGI

GO:0000902 "cell morphogenesis" evidence=RCA

GO:0006487 "protein N-linked glycosylation" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0016049 "cell growth" evidence=RCA

GO:0032880 "regulation of protein localization" evidence=RCA

GO:0046777 "protein autophosphorylation" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2013990 AT1G71020 [Arabidopsis thaliana (taxid:3702)]

 Score = 447 (162.4 bits), Expect = 3.2e-42, P = 3.2e-42
 Identities = 119/326 (36%), Positives = 182/326 (55%)

Query:     1 MISQWCRSQGIELPNSV---QYINEEGI---TEADRDHFLSLLKKMSA-TLPDQTEAAKE 53
             +ISQWC    IE P      +  N +G       D     +L+ K+S+ ++ D+  A  E
Sbjct:   305 LISQWCTKHNIEQPGGYMNGRTKNSDGSFRDLSGDMSAIRALVCKLSSQSIEDRRTAVSE 364

Query:    54 LRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNK 113
             +R L+KR    R L  E+  AIP L+  L+     +G +   QE+ +T +LNLSI+++NK
Sbjct:   365 IRSLSKRSTDNRILIAEA-GAIPVLVKLLTS----DG-DTETQENAVTCILNLSIYEHNK 418

Query:   114 KLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDE 173
             +L+     V  +++  LR+G++E R NAAA LF+LS  D NK +IG SGA+  L+DLL  
Sbjct:   419 ELIMLAGAVTSIVL-VLRAGSMEARENAAATLFSLSLADENKIIIGASGAIMALVDLLQY 477

Query:   174 GHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDGVH---VDELLAILAMLST 230
             G     KD A+A+FNLCI   NK RAVR G V  ++K + D       DE L IL++L++
Sbjct:   478 GSVRGKKDAATALFNLCIYQGNKGRAVRAGIVKPLVKMLTDSSSERMADEALTILSVLAS 537

Query:   231 NHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGT 290
             N  A   I     +  ++  +++    RN+EN  AIL  +C  D  K  ++    +    
Sbjct:   538 NQVAKTAILRANAIPPLIDCLQKDQ-PRNRENAAAILLCLCKRDTEKLISIGRLGAVV-P 595

Query:   291 ISKLAQDGTARAKRKATGILERLKRT 316
             + +L++DGT RAKRKA  +LE L+++
Sbjct:   596 LMELSRDGTERAKRKANSLLELLRKS 621

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005871 "kinesin complex" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0019894 "kinesin binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	323
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	1e-09
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	1e-05
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	9e-04
PLN03200	2102	PLN03200, PLN03200, cellulose synthase-interactive	0.002
pfam05804	708	pfam05804, KAP, Kinesin-associated protein (KAP)	0.002

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 55.4 bits (134), Expect = 1e-09
 Identities = 29/112 (25%), Positives = 46/112 (41%), Gaps = 1/112 (0%)

Query: 119 TPMVIPLLMDALRSGTIETRSNAAAALFTLSA-LDSNKEVIGKSGALKPLIDLLDEGHQS 177
               +P L+  L S     +  AA AL  LSA  + N + + ++G L  L+ LL    + 
Sbjct: 5   QAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEE 64

Query: 178 AMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDGVHVDELLAILAMLS 229
            +K    A+ NL    E+    V + G    L  ++D  + D        LS
Sbjct: 65  VVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALS 116

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 27/119 (22%), Positives = 47/119 (39%), Gaps = 9/119 (7%)

Query: 32  HFLSLLKKMSATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGI 91
             +SLL      +  Q EAA  L  L+           E+   +P L+  L         
Sbjct: 11  ALVSLLSSSDENV--QREAAWALSNLSAGNNDNIQAVVEAG-GLPALVQLLKSE------ 61

Query: 92  NPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSA 150
           +  + +  +  L NL+    + KL+      +P L++ L S   + + NA  AL  L++
Sbjct: 62  DEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 36.3 bits (85), Expect = 9e-04
 Identities = 12/39 (30%), Positives = 22/39 (56%)

Query: 152 DSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLC 190
             NK+ + ++GA+ PL+ LL    +   ++ A A+ NL 
Sbjct: 2   PENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLA 40

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional

 Score = 40.1 bits (94), Expect = 0.002
 Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 6/80 (7%)

Query: 111 NNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGK---SGALKPL 167
             +K +      +PLL+  LRSGT+  + NAAA    L  L   +++  K    G + PL
Sbjct: 48  EARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAA---VLGVLCKEEDLRVKVLLGGCIPPL 104

Query: 168 IDLLDEGHQSAMKDVASAIF 187
           + LL  G   A K  A AI+
Sbjct: 105 LSLLKSGSAEAQKAAAEAIY 124

Length = 2102

>gnl|CDD|147776 pfam05804, KAP, Kinesin-associated protein (KAP)

 Score = 39.5 bits (92), Expect = 0.002
 Identities = 39/176 (22%), Positives = 74/176 (42%), Gaps = 1/176 (0%)

Query: 100 ITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIG 159
              LLNL+  D   +L      ++ LL+ AL     E      + L  LS  D NK  + 
Sbjct: 266 FYLLLNLA-EDIKVELKMRRKNIVALLVKALDRDNSELLILVVSFLKKLSIFDENKNEME 324

Query: 160 KSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDGVHVD 219
           ++G ++ L+ L    H+  +      +FNL      + + V  G +  ++  + +  H  
Sbjct: 325 ENGIIEKLLKLFPCQHEDLLNITLRLLFNLSFDTGLRPKMVNGGLLPKLVSLLDNDNHHG 384

Query: 220 ELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDR 275
             L +L  LS + +A         +  +++++ E T +R     IA+   + L+ R
Sbjct: 385 IALCVLYHLSCDDKAKSMFAYTDCIPMLMKMVLEGTGERVDLELIALCINLALNKR 440

This family consists of several eukaryotic kinesin-associated (KAP) proteins. Kinesins are intracellular multimeric transport motor proteins that move cellular cargo on microtubule tracks. It has been shown that the sea urchin KRP85/95 holoenzyme associates with a KAP115 non-motor protein, forming a heterotrimeric complex in vitro, called the Kinesin-II. Length = 708

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	323
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.97
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.97
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	99.97
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.96
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.96
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	99.96
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	99.94
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	99.93
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.89
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.89
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.88
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.82
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.82
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.78
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.72
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.72
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.69
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.67
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	99.61
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	99.57
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.56
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.5
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	99.44
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.41
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.4
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	99.34
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	99.33
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	99.3
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	99.26
PRK09687	280	putative lyase; Provisional	99.14
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	99.05
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	99.02
PRK09687	280	putative lyase; Provisional	98.99
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	98.97
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	98.93
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	98.88
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	98.88
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	98.85
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	98.84
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	98.74
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	98.73
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	98.72
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	98.7
KOG4646	173	consensus Uncharacterized conserved protein, conta	98.69
KOG3678	832	consensus SARM protein (with sterile alpha and arm	98.69
KOG1293	678	consensus Proteins containing armadillo/beta-caten	98.67
KOG1293	678	consensus Proteins containing armadillo/beta-caten	98.63
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	98.56
KOG4646	173	consensus Uncharacterized conserved protein, conta	98.55
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	98.54
PF05536	543	Neurochondrin: Neurochondrin	98.51
KOG2973	353	consensus Uncharacterized conserved protein [Funct	98.46
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	98.46
PF05536	543	Neurochondrin: Neurochondrin	98.4
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	98.33
PTZ00429	746	beta-adaptin; Provisional	98.31
PTZ00429	746	beta-adaptin; Provisional	98.3
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	98.21
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	98.2
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	98.18
KOG2973	353	consensus Uncharacterized conserved protein [Funct	98.17
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	98.16
COG5369	743	Uncharacterized conserved protein [Function unknow	98.09
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	98.08
KOG3678	832	consensus SARM protein (with sterile alpha and arm	98.04
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	98.02
KOG0212	675	consensus Uncharacterized conserved protein [Funct	98.0
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	98.0
KOG2734	536	consensus Uncharacterized conserved protein [Funct	97.99
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	97.98
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	97.97
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	97.92
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	97.92
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	97.91
KOG4413	524	consensus 26S proteasome regulatory complex, subun	97.9
KOG2734	536	consensus Uncharacterized conserved protein [Funct	97.87
TIGR02270	410	conserved hypothetical protein. Members are found	97.87
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	97.8
KOG0212	675	consensus Uncharacterized conserved protein [Funct	97.71
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	97.71
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	97.64
TIGR02270	410	conserved hypothetical protein. Members are found	97.63
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.6
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.6
KOG1824	1233	consensus TATA-binding protein-interacting protein	97.6
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	97.6
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.59
KOG4413	524	consensus 26S proteasome regulatory complex, subun	97.58
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	97.56
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	97.52
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	97.42
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.41
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	97.41
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	97.32
COG1413	335	FOG: HEAT repeat [Energy production and conversion	97.29
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	97.28
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	97.27
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	97.27
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	97.22
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	97.21
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	97.2
KOG1242	569	consensus Protein containing adaptin N-terminal re	97.19
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	97.18
COG1413	335	FOG: HEAT repeat [Energy production and conversion	97.15
COG5369	743	Uncharacterized conserved protein [Function unknow	97.14
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	97.11
KOG1242	569	consensus Protein containing adaptin N-terminal re	97.1
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	97.09
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	97.07
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	97.05
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	97.04
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	97.02
PF07814	361	WAPL: Wings apart-like protein regulation of heter	97.01
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	96.93
KOG3036	293	consensus Protein involved in cell differentiation	96.93
KOG2259	823	consensus Uncharacterized conserved protein [Funct	96.92
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	96.9
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	96.75
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	96.72
KOG3036	293	consensus Protein involved in cell differentiation	96.69
PF05004	309	IFRD: Interferon-related developmental regulator (	96.62
KOG1824	1233	consensus TATA-binding protein-interacting protein	96.61
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	96.52
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	96.49
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	96.47
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	96.45
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	96.4
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	96.33
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	96.31
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	96.26
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	96.25
KOG1788	2799	consensus Uncharacterized conserved protein [Funct	96.18
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	96.14
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	96.11
PF12031	257	DUF3518: Domain of unknown function (DUF3518); Int	96.1
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	95.95
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	95.91
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	95.89
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	95.81
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	95.8
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	95.8
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	95.79
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	95.71
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	95.55
PF08045	257	CDC14: Cell division control protein 14, SIN compo	95.52
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	95.43
COG5096	757	Vesicle coat complex, various subunits [Intracellu	95.34
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	95.34
COG5096	757	Vesicle coat complex, various subunits [Intracellu	95.32
PF08045	257	CDC14: Cell division control protein 14, SIN compo	95.24
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	95.23
PF05004	309	IFRD: Interferon-related developmental regulator (	95.22
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	95.16
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	95.09
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	95.09
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	95.01
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	94.99
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	94.97
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	94.95
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	94.94
KOG2032	533	consensus Uncharacterized conserved protein [Funct	94.89
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	94.86
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	94.82
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	94.61
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	94.6
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	94.59
KOG0567	289	consensus HEAT repeat-containing protein [General	94.58
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	94.34
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	94.33
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	94.26
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	94.25
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	94.25
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	94.08
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	94.06
KOG2259	823	consensus Uncharacterized conserved protein [Funct	94.04
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	94.0
KOG4653	982	consensus Uncharacterized conserved protein [Funct	93.94
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	93.88
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	93.76
KOG4653	982	consensus Uncharacterized conserved protein [Funct	93.5
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	93.25
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	93.2
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	92.91
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	92.77
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	92.6
PF08324	268	PUL: PUL domain; InterPro: IPR013535 The PUL (afte	92.46
COG5209	315	RCD1 Uncharacterized protein involved in cell diff	92.29
COG5209	315	RCD1 Uncharacterized protein involved in cell diff	92.06
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	91.95
KOG0414	1251	consensus Chromosome condensation complex Condensi	91.44
PF08324	268	PUL: PUL domain; InterPro: IPR013535 The PUL (afte	91.43
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	90.99
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	90.7
PF12530	234	DUF3730: Protein of unknown function (DUF3730) ; I	90.49
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	90.09
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	89.6
KOG0414	1251	consensus Chromosome condensation complex Condensi	89.55
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	89.46
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	89.33
KOG2025	892	consensus Chromosome condensation complex Condensi	89.02
PF12031	257	DUF3518: Domain of unknown function (DUF3518); Int	88.44
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	87.8
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	87.69
KOG1566	342	consensus Conserved protein Mo25 [Function unknown	87.58
KOG2137	700	consensus Protein kinase [Signal transduction mech	87.05
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	86.82
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	86.8
KOG2025	892	consensus Chromosome condensation complex Condensi	86.78
KOG4464	532	consensus Signaling protein RIC-8/synembryn (regul	86.71
KOG0301	745	consensus Phospholipase A2-activating protein (con	86.29
KOG2956	516	consensus CLIP-associating protein [General functi	86.22
PF13251	182	DUF4042: Domain of unknown function (DUF4042)	85.8
COG5098	1128	Chromosome condensation complex Condensin, subunit	85.67
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	85.52
PF11865	160	DUF3385: Domain of unknown function (DUF3385); Int	85.06
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	84.75
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	84.61
cd03561	133	VHS VHS domain family; The VHS domain is present i	84.31
KOG2933	334	consensus Uncharacterized conserved protein [Funct	84.21
KOG2137	700	consensus Protein kinase [Signal transduction mech	83.95
PF11707	330	Npa1: Ribosome 60S biogenesis N-terminal; InterPro	83.74
PF14726	98	RTTN_N: Rotatin, an armadillo repeat protein, cent	83.71
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	83.33
KOG0301	745	consensus Phospholipase A2-activating protein (con	82.88
cd03569	142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	82.77
cd03568	144	VHS_STAM VHS domain family, STAM subfamily; member	82.76
PF12231	372	Rif1_N: Rap1-interacting factor 1 N terminal; Inte	82.23
COG5098	1128	Chromosome condensation complex Condensin, subunit	81.85
PF00790	140	VHS: VHS domain; InterPro: IPR002014 The VHS domai	81.64
cd03569	142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	81.29
PF12530	234	DUF3730: Protein of unknown function (DUF3730) ; I	81.21
smart00288	133	VHS Domain present in VPS-27, Hrs and STAM. Unpubl	80.76
KOG2933	334	consensus Uncharacterized conserved protein [Funct	80.2

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.97  E-value=6.1e-29  Score=257.84  Aligned_cols=280  Identities=18%  Similarity=0.241  Sum_probs=245.2

Q ss_pred             hhhhHHHHHHHHhc-C--CchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHH
Q 020640           28 ADRDHFLSLLKKMS-A--TLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLL  104 (323)
Q Consensus        28 ~~~~~i~~Lv~~l~-~--~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~  104 (323)
                      .....+..+++.|. .  +++.|..|+..|+.+++.++++|..+.+..|+||.|+.+|+      ++++.+++.|+.+|.
T Consensus        10 ~~~~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~------sg~~~vk~nAaaaL~   83 (2102)
T PLN03200         10 GTLASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLR------SGTLGAKVNAAAVLG   83 (2102)
T ss_pred             chHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHc------CCCHHHHHHHHHHHH
Confidence            34568999999995 3  57889999999999999999999999866899999999999      678999999999999


Q ss_pred             HhccccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC---Cchhh-hhccCChHHHHHHhhhcC---Hh
Q 020640          105 NLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALD---SNKEV-IGKSGALKPLIDLLDEGH---QS  177 (323)
Q Consensus       105 ~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~---~~~~~-i~~~g~i~~Lv~lL~~~~---~~  177 (323)
                      +++.+++++..|+. +|+++.|+.+|++++++.++.|+++|++|+.+.   .++.. ++..|++|.|+.++++++   ..
T Consensus        84 nLS~~e~nk~~Iv~-~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~  162 (2102)
T PLN03200         84 VLCKEEDLRVKVLL-GGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKV  162 (2102)
T ss_pred             HHhcCHHHHHHHHH-cCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHH
Confidence            99999889999998 568999999999999999999999999999764   34434 557999999999999863   34


Q ss_pred             HHHHHHHHHHHhccCCchhHH-HHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcC-HHHHHHHHhcCCHHHHHHHHhc
Q 020640          178 AMKDVASAIFNLCITHENKAR-AVRDGGVSVILKKIMDG--VHVDELLAILAMLSTN-HRAVEEIGDLGGVSCMLRIIRE  253 (323)
Q Consensus       178 ~~~~al~aL~~L~~~~~~~~~-i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~-~~~~~~i~~~g~i~~Lv~ll~~  253 (323)
                      ++..++.+|+|||...+++.. +++.|+++.|+.+|+++  ..++.|+.+|.+++.+ ++.+..+++.|+|+.|++++++
T Consensus       163 L~~~Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~s  242 (2102)
T PLN03200        163 VEGLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQ  242 (2102)
T ss_pred             HHHHHHHHHHHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcc
Confidence            677889999999999998865 58899999999999977  6789999999988875 8899999999999999999986


Q ss_pred             cCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCH---------HHHHHHHHHHHHHhc
Q 020640          254 STCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTA---------RAKRKATGILERLKR  315 (323)
Q Consensus       254 ~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~---------~~~~~A~~~L~~l~~  315 (323)
                      +++..+|++|+++|.+|+.++++. +..+.+.|+++.|++++.+.+.         ..++.|.|+|.|+++
T Consensus       243 g~~~~VRE~AA~AL~nLAs~s~e~-r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcg  312 (2102)
T PLN03200        243 GNEVSVRAEAAGALEALSSQSKEA-KQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICG  312 (2102)
T ss_pred             CCChHHHHHHHHHHHHHhcCCHHH-HHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhC
Confidence            654689999999999999988764 5566679999999999986553         358999999999997

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.97  E-value=1.5e-28  Score=254.96  Aligned_cols=282  Identities=18%  Similarity=0.224  Sum_probs=244.9

Q ss_pred             hhhHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhc
Q 020640           29 DRDHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLS  107 (323)
Q Consensus        29 ~~~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls  107 (323)
                      +.|+++.|+++|+ ++...|..|++.|.+++..+++++..+.+ .|+||.|+++|+      +++..+++.|+++|.|++
T Consensus       444 ~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIie-aGaIP~LV~LL~------s~~~~iqeeAawAL~NLa  516 (2102)
T PLN03200        444 GREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITA-AGGIPPLVQLLE------TGSQKAKEDSATVLWNLC  516 (2102)
T ss_pred             HcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH-CCCHHHHHHHHc------CCCHHHHHHHHHHHHHHh
Confidence            4568999999996 66888999999999999988889999999 999999999999      678999999999999999


Q ss_pred             cccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCch--------------------------------
Q 020640          108 IHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNK--------------------------------  155 (323)
Q Consensus       108 ~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~--------------------------------  155 (323)
                      .++++...++...|+++.|+++|++++++.++.++++|.+|....++.                                
T Consensus       517 ~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~  596 (2102)
T PLN03200        517 CHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVAS  596 (2102)
T ss_pred             CCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcc
Confidence            987766665544568999999999999999999999999996332211                                


Q ss_pred             -----hhh-hccCChHHHHHHhhhcCHhHHHHHHHHHHHhccCC-chhHHHHhhCchHHHHHHhhcC--chHHHHHHHHH
Q 020640          156 -----EVI-GKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITH-ENKARAVRDGGVSVILKKIMDG--VHVDELLAILA  226 (323)
Q Consensus       156 -----~~i-~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~-~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~  226 (323)
                           ... ...|+++.|+++++++++.+++.|+++|.+++.++ +.+..++..|++++++.+|+++  +.++.++++|.
T Consensus       597 ~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~  676 (2102)
T PLN03200        597 LEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALA  676 (2102)
T ss_pred             hhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHH
Confidence                 111 13689999999999999999999999999999877 5677889999999999999987  67999999999


Q ss_pred             HHhcC--HHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHH
Q 020640          227 MLSTN--HRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKR  304 (323)
Q Consensus       227 ~l~~~--~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~  304 (323)
                      |++.+  ++++..+++.|+++.|++++++++ ..+++.|+.+|.+++.+.+. ..++. ..|++++|++++++|+++.|+
T Consensus       677 nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d-~~v~e~Al~ALanLl~~~e~-~~ei~-~~~~I~~Lv~lLr~G~~~~k~  753 (2102)
T PLN03200        677 ALSRSIKENRKVSYAAEDAIKPLIKLAKSSS-IEVAEQAVCALANLLSDPEV-AAEAL-AEDIILPLTRVLREGTLEGKR  753 (2102)
T ss_pred             HHHhCCCHHHHHHHHHcCCHHHHHHHHhCCC-hHHHHHHHHHHHHHHcCchH-HHHHH-hcCcHHHHHHHHHhCChHHHH
Confidence            99963  566778899999999999999754 89999999999999999865 44555 578899999999999999999


Q ss_pred             HHHHHHHHHhcchhhc
Q 020640          305 KATGILERLKRTVNLT  320 (323)
Q Consensus       305 ~A~~~L~~l~~~~~~~  320 (323)
                      +|+++|.+|++..+..
T Consensus       754 ~Aa~AL~~L~~~~~~~  769 (2102)
T PLN03200        754 NAARALAQLLKHFPVD  769 (2102)
T ss_pred             HHHHHHHHHHhCCChh
Confidence            9999999999866543

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=1.3e-28  Score=225.90  Aligned_cols=282  Identities=15%  Similarity=0.134  Sum_probs=244.7

Q ss_pred             hhhHHHHHHHHhc--CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHh
Q 020640           29 DRDHFLSLLKKMS--ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNL  106 (323)
Q Consensus        29 ~~~~i~~Lv~~l~--~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~l  106 (323)
                      ..|.+|.+|+.|+  .++..|.+|+++|.|++.++.+.-+.+++ +|++|.++.+|.      +++..+++.|+++|.|+
T Consensus       107 ~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~-agavp~fi~Ll~------s~~~~v~eQavWALgNI  179 (514)
T KOG0166|consen  107 QSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVD-AGAVPIFIQLLS------SPSADVREQAVWALGNI  179 (514)
T ss_pred             HcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhcccccc-CCchHHHHHHhc------CCcHHHHHHHHHHHhcc
Confidence            3499999999995  44889999999999999999988889999 999999999999      88999999999999999


Q ss_pred             ccccchhhhhhccCCcHHHHHHHHhcCCH-HHHHHHHHHHHHhcCCCCchhhhhc-cCChHHHHHHhhhcCHhHHHHHHH
Q 020640          107 SIHDNNKKLVAETPMVIPLLMDALRSGTI-ETRSNAAAALFTLSALDSNKEVIGK-SGALKPLIDLLDEGHQSAMKDVAS  184 (323)
Q Consensus       107 s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~-~~~~~a~~~L~~L~~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~al~  184 (323)
                      +.+....+.++-..|+++.|+.++...+. .....+.|+|.||+.+.+....+.. ..++|.|..++.+.|+.+...|+|
T Consensus       180 agds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~W  259 (514)
T KOG0166|consen  180 AGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACW  259 (514)
T ss_pred             ccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            99888544444445689999999987765 7888999999999987765555544 678999999999999999999999


Q ss_pred             HHHHhccCCc-hhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcCH-HHHHHHHhcCCHHHHHHHHhccCChhHH
Q 020640          185 AIFNLCITHE-NKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNH-RAVEEIGDLGGVSCMLRIIRESTCDRNK  260 (323)
Q Consensus       185 aL~~L~~~~~-~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~~-~~~~~i~~~g~i~~Lv~ll~~~~~~~~~  260 (323)
                      +|.+|+.+.. .-+.+++.|+++.|+.+|...  .++..|++++-|++.+. ...+.+++.|+++.|..++..++.+.++
T Consensus       260 AlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ik  339 (514)
T KOG0166|consen  260 ALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIK  339 (514)
T ss_pred             HHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHH
Confidence            9999998775 555568889999999999876  57788999999999975 4555577899999999999965546689


Q ss_pred             HHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhcchh
Q 020640          261 ENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTVN  318 (323)
Q Consensus       261 ~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~  318 (323)
                      ..|||++.|++.++....+.++ ++|.++.|+++++++.-++|+.|+|++.|++....
T Consensus       340 kEAcW~iSNItAG~~~qiqaVi-da~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~  396 (514)
T KOG0166|consen  340 KEACWTISNITAGNQEQIQAVI-DANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGT  396 (514)
T ss_pred             HHHHHHHHHhhcCCHHHHHHHH-HcccHHHHHHHHhccchHHHHHHHHHHHhhcccCC
Confidence            9999999999999988766666 68999999999999999999999999999986543

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=1.2e-28  Score=213.59  Aligned_cols=275  Identities=16%  Similarity=0.243  Sum_probs=248.9

Q ss_pred             hHHHHHHHHh-cCCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccc
Q 020640           31 DHFLSLLKKM-SATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIH  109 (323)
Q Consensus        31 ~~i~~Lv~~l-~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~  109 (323)
                      +.+..|+.++ .+..++|+.++.+|.+++.. .+++..+.. .|++.++.++-+      +++..+|.+++.+|.|+...
T Consensus       126 ~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~-d~nk~kiA~-sGaL~pltrLak------skdirvqrnatgaLlnmThs  197 (550)
T KOG4224|consen  126 LGLDLLILQMMTDGVEVQCNAVGCITNLATF-DSNKVKIAR-SGALEPLTRLAK------SKDIRVQRNATGALLNMTHS  197 (550)
T ss_pred             cChHHHHHHhcCCCcEEEeeehhhhhhhhcc-ccchhhhhh-ccchhhhHhhcc------cchhhHHHHHHHHHHHhhhh
Confidence            4455566555 46688999999999999976 678999999 999999999666      78999999999999999999


Q ss_pred             cchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccC--ChHHHHHHhhhcCHhHHHHHHHHHH
Q 020640          110 DNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSG--ALKPLIDLLDEGHQSAMKDVASAIF  187 (323)
Q Consensus       110 ~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g--~i~~Lv~lL~~~~~~~~~~al~aL~  187 (323)
                      .++|+.++..|| +|.|+.++++++++++..++.++.+++-...+++.+++.+  .++.|++++++++++++-.|..+|+
T Consensus       198 ~EnRr~LV~aG~-lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALr  276 (550)
T KOG4224|consen  198 RENRRVLVHAGG-LPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALR  276 (550)
T ss_pred             hhhhhhhhccCC-chhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHh
Confidence            999999999876 9999999999999999999999999999888999999866  9999999999999999999999999


Q ss_pred             HhccCCchhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHH
Q 020640          188 NLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIA  265 (323)
Q Consensus       188 ~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~  265 (323)
                      ||+.+.+-...++++|++|.++++|+++  ...-..+.+++|++.+|-+...|++.|.+.+||.+|+.+++++.|-+|..
T Consensus       277 nlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvs  356 (550)
T KOG4224|consen  277 NLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVS  356 (550)
T ss_pred             hhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHH
Confidence            9999999999999999999999999987  56677788899999999999999999999999999998887889999999


Q ss_pred             HHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 020640          266 ILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKR  315 (323)
Q Consensus       266 ~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~  315 (323)
                      +|++|+...+...+ .+.++|.++.|.+++.++...++..-..++..|+=
T Consensus       357 tLrnLAasse~n~~-~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal  405 (550)
T KOG4224|consen  357 TLRNLAASSEHNVS-VIRESGAIPKLIELLLDGPVSVQSEISACIAQLAL  405 (550)
T ss_pred             HHHHHhhhhhhhhH-HHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHh
Confidence            99999997755444 44579999999999999999999988888888763

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=3.1e-28  Score=210.94  Aligned_cols=278  Identities=17%  Similarity=0.228  Sum_probs=252.5

Q ss_pred             hhhhHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHh
Q 020640           28 ADRDHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNL  106 (323)
Q Consensus        28 ~~~~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~l  106 (323)
                      +..|++..+.++-+ .+..+|..+..+|.+++ ++.++|+.++. .|++|.|+.+++      +.|..+|.+++.++.|+
T Consensus       164 A~sGaL~pltrLakskdirvqrnatgaLlnmT-hs~EnRr~LV~-aG~lpvLVsll~------s~d~dvqyycttaisnI  235 (550)
T KOG4224|consen  164 ARSGALEPLTRLAKSKDIRVQRNATGALLNMT-HSRENRRVLVH-AGGLPVLVSLLK------SGDLDVQYYCTTAISNI  235 (550)
T ss_pred             hhccchhhhHhhcccchhhHHHHHHHHHHHhh-hhhhhhhhhhc-cCCchhhhhhhc------cCChhHHHHHHHHhhhh
Confidence            34477777877444 56778999999999999 57899999999 999999999999      77999999999999999


Q ss_pred             ccccchhhhhhccC-CcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHH
Q 020640          107 SIHDNNKKLVAETP-MVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASA  185 (323)
Q Consensus       107 s~~~~~~~~i~~~~-g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~a  185 (323)
                      +.+..+|+.+++.+ .+++.|+.+..+++++++-.|..+|.+|+.+.+....+++.|.+|.++++|+++..........+
T Consensus       236 aVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaC  315 (550)
T KOG4224|consen  236 AVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVAC  315 (550)
T ss_pred             hhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHH
Confidence            99888999888853 48999999999999999999999999999999999999999999999999999988888999999


Q ss_pred             HHHhccCCchhHHHHhhCchHHHHHHhhcC---chHHHHHHHHHHHhc-CHHHHHHHHhcCCHHHHHHHHhccCChhHHH
Q 020640          186 IFNLCITHENKARAVRDGGVSVILKKIMDG---VHVDELLAILAMLST-NHRAVEEIGDLGGVSCMLRIIRESTCDRNKE  261 (323)
Q Consensus       186 L~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~---~~~~~a~~~L~~l~~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~  261 (323)
                      ++|++.++-|...++++|.+.+|+++|+-+   +.+-.|+.+|+||+. .+.+++.|.+.|+|+.+..++.+++ -.+|+
T Consensus       316 IrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~p-vsvqs  394 (550)
T KOG4224|consen  316 IRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGP-VSVQS  394 (550)
T ss_pred             HhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCC-hhHHH
Confidence            999999999999999999999999999865   578899999999999 6899999999999999999999876 88899


Q ss_pred             HHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhcc
Q 020640          262 NCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRT  316 (323)
Q Consensus       262 ~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~  316 (323)
                      .--.++..|+..+..  +..+.+.|.++.|+.|..+.+.+++.+|+.+|-||+.-
T Consensus       395 eisac~a~Lal~d~~--k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~  447 (550)
T KOG4224|consen  395 EISACIAQLALNDND--KEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSD  447 (550)
T ss_pred             HHHHHHHHHHhcccc--HHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhh
Confidence            988899999888754  45556899999999999999999999999999999863

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=2.8e-27  Score=217.20  Aligned_cols=284  Identities=15%  Similarity=0.163  Sum_probs=246.3

Q ss_pred             hhhHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhc
Q 020640           29 DRDHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLS  107 (323)
Q Consensus        29 ~~~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls  107 (323)
                      +.|++|.++.++. .+..+++.|+++|.|++.+++.+|..+.+ .|++++|+.++...     ......+.++++|.||+
T Consensus       150 ~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~-~g~l~pLl~~l~~~-----~~~~~lRn~tW~LsNlc  223 (514)
T KOG0166|consen  150 DAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLS-CGALDPLLRLLNKS-----DKLSMLRNATWTLSNLC  223 (514)
T ss_pred             cCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHh-hcchHHHHHHhccc-----cchHHHHHHHHHHHHHH
Confidence            3489999999996 66889999999999999999999999999 99999999999842     22478999999999999


Q ss_pred             cccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCc-hhhhhccCChHHHHHHhhhcCHhHHHHHHHHH
Q 020640          108 IHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSN-KEVIGKSGALKPLIDLLDEGHQSAMKDVASAI  186 (323)
Q Consensus       108 ~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~-~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL  186 (323)
                      .+.+....+.....++|.|..++.+.++++...++|+|.+|+.+++. -..+++.|+++.|+++|...+..++..|++++
T Consensus       224 rgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRai  303 (514)
T KOG0166|consen  224 RGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAI  303 (514)
T ss_pred             cCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhc
Confidence            98865554444344799999999999999999999999999966654 45556799999999999999999999999999


Q ss_pred             HHhccCCchhHH-HHhhCchHHHHHHhhcC---chHHHHHHHHHHHhcC-HHHHHHHHhcCCHHHHHHHHhccCChhHHH
Q 020640          187 FNLCITHENKAR-AVRDGGVSVILKKIMDG---VHVDELLAILAMLSTN-HRAVEEIGDLGGVSCMLRIIRESTCDRNKE  261 (323)
Q Consensus       187 ~~L~~~~~~~~~-i~~~g~v~~Lv~ll~~~---~~~~~a~~~L~~l~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~  261 (323)
                      .|++.+++...+ ++..|+++.|..++...   .+++.|+|++.|++.+ ++..+.++++|.+|.|+.+++.++ .++|.
T Consensus       304 GNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~e-f~~rK  382 (514)
T KOG0166|consen  304 GNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAE-FDIRK  382 (514)
T ss_pred             cceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccc-hHHHH
Confidence            999998876665 57889999999999843   5789999999999995 789999999999999999999776 88999


Q ss_pred             HHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhcchhh
Q 020640          262 NCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTVNL  319 (323)
Q Consensus       262 ~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~  319 (323)
                      .|+|++.|++.......-..+.+.|++++|..++...+.++...+..+|+++.+....
T Consensus       383 EAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~  440 (514)
T KOG0166|consen  383 EAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEA  440 (514)
T ss_pred             HHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHH
Confidence            9999999999866543334455789999999999888999999999999999887654

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=99.94  E-value=8.8e-26  Score=194.28  Aligned_cols=278  Identities=15%  Similarity=0.112  Sum_probs=235.9

Q ss_pred             hhhhHHHHHHHHhc-CC-chhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHH
Q 020640           28 ADRDHFLSLLKKMS-AT-LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLN  105 (323)
Q Consensus        28 ~~~~~i~~Lv~~l~-~~-~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~  105 (323)
                      .+.|++|++|+++. .. ...+.+|.++|.|++.+...-.+.+++ +|++|.++++|.      +.+.++++.++++|.|
T Consensus       111 IdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd-~~AVPlfiqlL~------s~~~~V~eQavWALGN  183 (526)
T COG5064         111 IDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVD-AGAVPLFIQLLS------STEDDVREQAVWALGN  183 (526)
T ss_pred             HhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEe-CCchHHHHHHHc------CchHHHHHHHHHHhcc
Confidence            56699999999995 32 445889999999999887766677889 999999999999      7788999999999999


Q ss_pred             hccccc-hhhhhhccCCcHHHHHHHHhcC--CHHHHHHHHHHHHHhcCCCCc--hhhhhccCChHHHHHHhhhcCHhHHH
Q 020640          106 LSIHDN-NKKLVAETPMVIPLLMDALRSG--TIETRSNAAAALFTLSALDSN--KEVIGKSGALKPLIDLLDEGHQSAMK  180 (323)
Q Consensus       106 ls~~~~-~~~~i~~~~g~i~~Lv~ll~~~--~~~~~~~a~~~L~~L~~~~~~--~~~i~~~g~i~~Lv~lL~~~~~~~~~  180 (323)
                      ++.+.+ +|.-+.+. |+++.++.++.+.  +......+.|+|.||+...+.  -..-+ ..++|.|.+++.+.++++..
T Consensus       184 iAGDS~~~RD~vL~~-galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~i-sqalpiL~KLiys~D~evlv  261 (526)
T COG5064         184 IAGDSEGCRDYVLQC-GALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNI-SQALPILAKLIYSRDPEVLV  261 (526)
T ss_pred             ccCCchhHHHHHHhc-CchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHH-HHHHHHHHHHHhhcCHHHHH
Confidence            999888 56666665 5899999999876  457888999999999965432  22222 33799999999999999999


Q ss_pred             HHHHHHHHhccCCchh-HHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcCHHHHH-HHHhcCCHHHHHHHHhccCC
Q 020640          181 DVASAIFNLCITHENK-ARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVE-EIGDLGGVSCMLRIIRESTC  256 (323)
Q Consensus       181 ~al~aL~~L~~~~~~~-~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~~~~~~-~i~~~g~i~~Lv~ll~~~~~  256 (323)
                      .|+|++..|+..+..+ ..+++.|..+.|+++|.++  .++..+++.+.|+....+.+. .+++.|+++.+-.+|.+.. 
T Consensus       262 DA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~k-  340 (526)
T COG5064         262 DACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPK-  340 (526)
T ss_pred             HHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChh-
Confidence            9999999999988544 5567889999999999976  678889999999999765555 4678899999999999665 


Q ss_pred             hhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhcc
Q 020640          257 DRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRT  316 (323)
Q Consensus       257 ~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~  316 (323)
                      +.++..|||++.|++..+.+..+.++ +++.+|+|++++.+-.=.+++.|+|++.|....
T Consensus       341 e~irKEaCWTiSNITAGnteqiqavi-d~nliPpLi~lls~ae~k~kKEACWAisNatsg  399 (526)
T COG5064         341 ENIRKEACWTISNITAGNTEQIQAVI-DANLIPPLIHLLSSAEYKIKKEACWAISNATSG  399 (526)
T ss_pred             hhhhhhhheeecccccCCHHHHHHHH-hcccchHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            78999999999999999987665555 799999999999999999999999999998754

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=99.93  E-value=3.6e-25  Score=190.53  Aligned_cols=281  Identities=13%  Similarity=0.121  Sum_probs=240.6

Q ss_pred             hhhhHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHh
Q 020640           28 ADRDHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNL  106 (323)
Q Consensus        28 ~~~~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~l  106 (323)
                      -+.|++|.++.+|. .+.+++.+++++|.|++.+++.+|..+.+ .|++++++.+|.+.    ..+....+.+.++|.||
T Consensus       154 vd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~-~galeplL~ll~ss----~~~ismlRn~TWtLSNl  228 (526)
T COG5064         154 VDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQ-CGALEPLLGLLLSS----AIHISMLRNATWTLSNL  228 (526)
T ss_pred             EeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHh-cCchHHHHHHHHhc----cchHHHHHHhHHHHHHh
Confidence            45699999999996 56889999999999999999999999999 99999999999843    33568999999999999


Q ss_pred             ccccc---hhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCc-hhhhhccCChHHHHHHhhhcCHhHHHHH
Q 020640          107 SIHDN---NKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSN-KEVIGKSGALKPLIDLLDEGHQSAMKDV  182 (323)
Q Consensus       107 s~~~~---~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~-~~~i~~~g~i~~Lv~lL~~~~~~~~~~a  182 (323)
                      +....   +-..+..   ++|.|.+++.+.++++...|+|++..|+..+.. ...+.+.|+...|+++|.+++..++..+
T Consensus       229 cRGknP~P~w~~isq---alpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPa  305 (526)
T COG5064         229 CRGKNPPPDWSNISQ---ALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPA  305 (526)
T ss_pred             hCCCCCCCchHHHHH---HHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHH
Confidence            97654   2333433   589999999999999999999999999976654 4555679999999999999999999999


Q ss_pred             HHHHHHhccCCchhHH-HHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcC-HHHHHHHHhcCCHHHHHHHHhccCChh
Q 020640          183 ASAIFNLCITHENKAR-AVRDGGVSVILKKIMDG--VHVDELLAILAMLSTN-HRAVEEIGDLGGVSCMLRIIRESTCDR  258 (323)
Q Consensus       183 l~aL~~L~~~~~~~~~-i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~  258 (323)
                      ++.+.|+..+++.... +++.|+++.+-.+|.++  .+++.+||.+.|+... .+..+.+++.+.+|.|+++|...+ -+
T Consensus       306 lR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae-~k  384 (526)
T COG5064         306 LRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAE-YK  384 (526)
T ss_pred             HHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHH-HH
Confidence            9999999888766555 57889999999999876  7899999999999985 688889999999999999999765 88


Q ss_pred             HHHHHHHHHHHhcccC---hHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhcchh
Q 020640          259 NKENCIAILHTICLSD---RTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTVN  318 (323)
Q Consensus       259 ~~~~a~~~L~~L~~~~---~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~  318 (323)
                      .+..|||++.|.+++.   |+..+.++ +.|+|.+|..++...+.++-+-|..+++++.+...
T Consensus       385 ~kKEACWAisNatsgg~~~PD~iryLv-~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge  446 (526)
T COG5064         385 IKKEACWAISNATSGGLNRPDIIRYLV-SQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGE  446 (526)
T ss_pred             HHHHHHHHHHhhhccccCCchHHHHHH-HccchhHHHHHHhccCccchhhhHHHHHHHHhhhh
Confidence            9999999999998765   45555554 68999999999998887788888888888776443

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.89  E-value=5.3e-22  Score=195.28  Aligned_cols=269  Identities=19%  Similarity=0.170  Sum_probs=233.7

Q ss_pred             HHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhccccc------CCCCCHHHHHHHHHHHHHhccccc-hhhhhhcc
Q 020640           47 QTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKC------ENGINPNLQEDVITTLLNLSIHDN-NKKLVAET  119 (323)
Q Consensus        47 ~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~------~~~~~~~~~~~a~~~L~~ls~~~~-~~~~i~~~  119 (323)
                      .+.|+..|++++ .++++|+.+.+ .|++..+-++|.-...      .+.....++.+|..+|.||.+.+. |+..++..
T Consensus       315 lcaA~~~lMK~S-FDEEhR~aM~E-LG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~  392 (2195)
T KOG2122|consen  315 LCAALCTLMKLS-FDEEHRHAMNE-LGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQ  392 (2195)
T ss_pred             hHHHHHHHHHhh-ccHHHHHHHHH-hhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhh
Confidence            448999999999 68999999999 9999999988852110      113346799999999999999888 78899988


Q ss_pred             CCcHHHHHHHHhcCCHHHHHHHHHHHHHhc-CCCCc-hhhhhccCChHHHHHH-hhhcCHhHHHHHHHHHHHhccCC-ch
Q 020640          120 PMVIPLLMDALRSGTIETRSNAAAALFTLS-ALDSN-KEVIGKSGALKPLIDL-LDEGHQSAMKDVASAIFNLCITH-EN  195 (323)
Q Consensus       120 ~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~-~~~~~-~~~i~~~g~i~~Lv~l-L~~~~~~~~~~al~aL~~L~~~~-~~  195 (323)
                      .|+++.+|..|.+..+++..-.+.+|+||+ .-+.| ++.+.+.|-+..|+.. ++.......+..+.+||||+.+. +|
T Consensus       393 rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteN  472 (2195)
T KOG2122|consen  393 RGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTEN  472 (2195)
T ss_pred             hhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhccccc
Confidence            899999999999999999999999999998 44555 5555569999999986 55567789999999999999876 89


Q ss_pred             hHHHHhh-CchHHHHHHhhcC------chHHHHHHHHHHHhc----CHHHHHHHHhcCCHHHHHHHHhccCChhHHHHHH
Q 020640          196 KARAVRD-GGVSVILKKIMDG------VHVDELLAILAMLST----NHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCI  264 (323)
Q Consensus       196 ~~~i~~~-g~v~~Lv~ll~~~------~~~~~a~~~L~~l~~----~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~  264 (323)
                      +..|... |++..|+.+|.-.      .+.+.+-+||.|+++    +++.|+.+.++.+++.|+++|++. +-.+..++|
T Consensus       473 KA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~-SLTiVSNaC  551 (2195)
T KOG2122|consen  473 KAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSH-SLTIVSNAC  551 (2195)
T ss_pred             chhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhc-ceEEeecch
Confidence            9999986 9999999999843      578999999999877    589999999999999999999954 488999999


Q ss_pred             HHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhcchhh
Q 020640          265 AILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTVNL  319 (323)
Q Consensus       265 ~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~  319 (323)
                      ++||||+..++. -++++.+.|.++.|.+++++.+..+-.-++.+|+||..|.+.
T Consensus       552 GTLWNLSAR~p~-DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~RPA  605 (2195)
T KOG2122|consen  552 GTLWNLSARSPE-DQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFRPA  605 (2195)
T ss_pred             hhhhhhhcCCHH-HHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCCch
Confidence            999999999976 568888999999999999999999999999999999988754

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.89  E-value=9.6e-21  Score=183.01  Aligned_cols=284  Identities=18%  Similarity=0.203  Sum_probs=239.8

Q ss_pred             hhhhHHHHHHHHhcCCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhccccc--------------------
Q 020640           28 ADRDHFLSLLKKMSATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKC--------------------   87 (323)
Q Consensus        28 ~~~~~i~~Lv~~l~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~--------------------   87 (323)
                      +.-+-+...++++-++...+.++...|..+++ +++|-..+..+.-.+..|.+.|++.-.                    
T Consensus       120 a~~~~~d~yiE~lYe~~~ek~~~~~~il~La~-~~~NL~~l~~ne~l~~aL~RvLred~~ks~~l~tnI~~iF~~fS~f~  198 (708)
T PF05804_consen  120 ASINDLDEYIELLYEDIPEKIRGTSLILQLAR-NPENLEELVQNETLMSALARVLREDWKKSVELATNIIYIFFCFSNFS  198 (708)
T ss_pred             CCHHHHHHHHHHHhcccHHHHHHHHHHHHHhC-CcchHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhHH
Confidence            34567888999997777778999999999996 566777766647788999999965111                    


Q ss_pred             ---------------------C-----------------CC---------------------CCHHHHHHHHHHHHHhcc
Q 020640           88 ---------------------E-----------------NG---------------------INPNLQEDVITTLLNLSI  108 (323)
Q Consensus        88 ---------------------~-----------------~~---------------------~~~~~~~~a~~~L~~ls~  108 (323)
                                           |                 .+                     ....+...+..+|.|+|.
T Consensus       199 ~fH~~l~~~kiG~l~m~iie~Elkr~~~w~~~l~~~~~~~~~~~~~~~~~~~~~kk~~~l~~kQeqLlrv~~~lLlNLAe  278 (708)
T PF05804_consen  199 QFHPILAHYKIGSLCMEIIEHELKRHDLWQEELRKKKKAAEEKPEAKKDYEKELKKLQTLIRKQEQLLRVAFYLLLNLAE  278 (708)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence                                 0                 00                     012345567778999999


Q ss_pred             ccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHH
Q 020640          109 HDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFN  188 (323)
Q Consensus       109 ~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~  188 (323)
                      +......+.+.+ +++.|+.+|.+++.+....+.++|.+|+.+.+|+..+.+.|+++.|++++.+++..+...++++|+|
T Consensus       279 d~~ve~kM~~~~-iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~N  357 (708)
T PF05804_consen  279 DPRVELKMVNKG-IVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFN  357 (708)
T ss_pred             ChHHHHHHHhcC-CHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence            998999999865 7999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccCCchhHHHHhhCchHHHHHHhhcCchHHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHH
Q 020640          189 LCITHENKARAVRDGGVSVILKKIMDGVHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILH  268 (323)
Q Consensus       189 L~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~  268 (323)
                      ||.+++.|..+++.|++|.|+.+|.++..+..++.+|.++|.++++|..|...++++.+++++..++++.++..++.++.
T Consensus       358 LSfd~~~R~~mV~~GlIPkLv~LL~d~~~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~i  437 (708)
T PF05804_consen  358 LSFDPELRSQMVSLGLIPKLVELLKDPNFREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLI  437 (708)
T ss_pred             hCcCHHHHHHHHHCCCcHHHHHHhCCCchHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHH
Confidence            99999999999999999999999999888888999999999999999999999999999999877665777888899999


Q ss_pred             HhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhcchh
Q 020640          269 TICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTVN  318 (323)
Q Consensus       269 ~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~  318 (323)
                      ||+.+... . +++-+.++++.|++......+..   -..+++|++.|.+
T Consensus       438 NLa~~~rn-a-qlm~~g~gL~~L~~ra~~~~D~l---LlKlIRNiS~h~~  482 (708)
T PF05804_consen  438 NLALNKRN-A-QLMCEGNGLQSLMKRALKTRDPL---LLKLIRNISQHDG  482 (708)
T ss_pred             HHhcCHHH-H-HHHHhcCcHHHHHHHHHhcccHH---HHHHHHHHHhcCc
Confidence            99998754 3 45456789999999887664322   3458999998873

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.88  E-value=2.3e-20  Score=180.34  Aligned_cols=264  Identities=20%  Similarity=0.221  Sum_probs=226.3

Q ss_pred             HHHHHHhcCCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchh
Q 020640           34 LSLLKKMSATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNK  113 (323)
Q Consensus        34 ~~Lv~~l~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~  113 (323)
                      +.+-.++..+......+...|.|++. ++.....+.+ .|+++.|+++|+      +++.++...++.+|.+||...+|+
T Consensus       253 kk~~~l~~kQeqLlrv~~~lLlNLAe-d~~ve~kM~~-~~iV~~Lv~~Ld------r~n~ellil~v~fLkkLSi~~ENK  324 (708)
T PF05804_consen  253 KKLQTLIRKQEQLLRVAFYLLLNLAE-DPRVELKMVN-KGIVSLLVKCLD------RENEELLILAVTFLKKLSIFKENK  324 (708)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhc-ChHHHHHHHh-cCCHHHHHHHHc------CCCHHHHHHHHHHHHHHcCCHHHH
Confidence            44444444444555678889999995 7788899999 999999999999      678999999999999999999999


Q ss_pred             hhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHHhccCC
Q 020640          114 KLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITH  193 (323)
Q Consensus       114 ~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~  193 (323)
                      ..+.+. |+++.|++++++++.+.+..++++|+||+.+++.+..+++.|++|.|+.+|.++  ..+..++.+|++||.++
T Consensus       325 ~~m~~~-giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd  401 (708)
T PF05804_consen  325 DEMAES-GIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDP--NFREVALKILYNLSMDD  401 (708)
T ss_pred             HHHHHc-CCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccCH
Confidence            999986 589999999999999999999999999999999999999999999999999865  46677999999999999


Q ss_pred             chhHHHHhhCchHHHHHHhhcC---chHHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHh
Q 020640          194 ENKARAVRDGGVSVILKKIMDG---VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTI  270 (323)
Q Consensus       194 ~~~~~i~~~g~v~~Lv~ll~~~---~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L  270 (323)
                      +.|..+...++++.+++++-++   .+....+.++.|+|.++.+.+.+.+.|+++.|++...... +.+   .+..+.|+
T Consensus       402 ~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~-D~l---LlKlIRNi  477 (708)
T PF05804_consen  402 EARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTR-DPL---LLKLIRNI  477 (708)
T ss_pred             hhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcc-cHH---HHHHHHHH
Confidence            9999998889999999987754   4566688999999999999999999899999997776444 333   44799999


Q ss_pred             cccChHhHHHHHhhcccHHHHHHHhhcC-CHHHHHHHHHHHHHHhc
Q 020640          271 CLSDRTKWKAMREEESTHGTISKLAQDG-TARAKRKATGILERLKR  315 (323)
Q Consensus       271 ~~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~~A~~~L~~l~~  315 (323)
                      +.+++. .+..+  .+++..|+.++..+ +++..-.+.++|.||.-
T Consensus       478 S~h~~~-~k~~f--~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~  520 (708)
T PF05804_consen  478 SQHDGP-LKELF--VDFIGDLAKIVSSGDSEEFVVECLGILANLTI  520 (708)
T ss_pred             HhcCch-HHHHH--HHHHHHHHHHhhcCCcHHHHHHHHHHHHhccc
Confidence            999854 34554  36999999998876 88899999999999974

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.82  E-value=9.3e-18  Score=144.78  Aligned_cols=283  Identities=17%  Similarity=0.243  Sum_probs=238.2

Q ss_pred             hhhhHHHHHHHHhc---CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHH
Q 020640           28 ADRDHFLSLLKKMS---ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLL  104 (323)
Q Consensus        28 ~~~~~i~~Lv~~l~---~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~  104 (323)
                      .+...+..++++|.   ++.+.....+..++..|..++.+|..|++ .++.+.+...|.+.    +.+ .+.+.++++++
T Consensus       142 ~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~-~~il~Li~~~l~~~----gk~-~~VRel~~a~r  215 (461)
T KOG4199|consen  142 FDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFME-LKILELILQVLNRE----GKT-RTVRELYDAIR  215 (461)
T ss_pred             hccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHH-hhHHHHHHHHHccc----Ccc-HHHHHHHHHHH
Confidence            45567888889884   55778888999999999999999999999 99999999888754    233 67788889999


Q ss_pred             Hhccccchh----------hhhhccCCcHHHHHHHHhcC-CHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhh
Q 020640          105 NLSIHDNNK----------KLVAETPMVIPLLMDALRSG-TIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDE  173 (323)
Q Consensus       105 ~ls~~~~~~----------~~i~~~~g~i~~Lv~ll~~~-~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~  173 (323)
                      .|..+++-|          +.|.+.+ ....|+..++-. ++......+.+|..|+..++.+..+.+.|++..|+.++.+
T Consensus       216 ~l~~dDDiRV~fg~ah~hAr~ia~e~-~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d  294 (461)
T KOG4199|consen  216 ALLTDDDIRVVFGQAHGHARTIAKEG-ILTALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDD  294 (461)
T ss_pred             HhcCCCceeeecchhhHHHHHHHHhh-hHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence            988777644          3555554 477888888764 7899999999999999999999999999999999999987


Q ss_pred             c----CHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhc----CchHHHHHHHHHHHhc-CHHHHHHHHhcCCH
Q 020640          174 G----HQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMD----GVHVDELLAILAMLST-NHRAVEEIGDLGGV  244 (323)
Q Consensus       174 ~----~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~----~~~~~~a~~~L~~l~~-~~~~~~~i~~~g~i  244 (323)
                      .    .....+.++..|+.|+.+++++..|++.|+.+.++.++..    +.+.+.++.+++-||. .|++-..+++.|+-
T Consensus       295 ~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a  374 (461)
T KOG4199|consen  295 SNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAA  374 (461)
T ss_pred             hchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchH
Confidence            3    3346678999999999999999999999999999998753    2578888999999998 58999999999999


Q ss_pred             HHHHHHHhccC-ChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhcchhh
Q 020640          245 SCMLRIIREST-CDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTVNL  319 (323)
Q Consensus       245 ~~Lv~ll~~~~-~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~  319 (323)
                      ...++.|+..+ ...+|++||+.+.|+..++.+.+..++  +.+++.|+......++.....|..+|+-|..+...
T Consensus       375 ~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l--~~GiE~Li~~A~~~h~tce~~akaALRDLGc~v~l  448 (461)
T KOG4199|consen  375 DLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILL--ANGIEKLIRTAKANHETCEAAAKAALRDLGCDVYL  448 (461)
T ss_pred             HHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHH--hccHHHHHHHHHhcCccHHHHHHHHHHhcCcchhh
Confidence            99999998643 255899999999999999876544444  68999999999999999999999999999875443

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.82  E-value=1.2e-17  Score=144.18  Aligned_cols=264  Identities=18%  Similarity=0.255  Sum_probs=216.7

Q ss_pred             HHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccc-hhhhhhccCCcHHH
Q 020640           47 QTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDN-NKKLVAETPMVIPL  125 (323)
Q Consensus        47 ~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~-~~~~i~~~~g~i~~  125 (323)
                      ..+++.+|..+..+.|    .+.+ +.++..++.+|...    .++.++.-.....+..-+...+ +|..+++.+ +.+.
T Consensus       124 l~ksL~al~~lt~~qp----dl~d-a~g~~vvv~lL~~~----~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~-il~L  193 (461)
T KOG4199|consen  124 LKKSLEAINSLTHKQP----DLFD-AEAMAVVLKLLALK----VESEEVTLLTLQWLQKACIMHEVNRQLFMELK-ILEL  193 (461)
T ss_pred             HHHHHHHHHHhhcCCc----chhc-cccHHHHHHHHhcc----cchHHHHHHHHHHHHHHHHHhHHHHHHHHHhh-HHHH
Confidence            4456666666665443    4567 88899999999755    5677888888888887666555 899999965 7888


Q ss_pred             HHHHHhc-CCHHHHHHHHHHHHHhcCCCCc----------hhhhhccCChHHHHHHhhhc-CHhHHHHHHHHHHHhccCC
Q 020640          126 LMDALRS-GTIETRSNAAAALFTLSALDSN----------KEVIGKSGALKPLIDLLDEG-HQSAMKDVASAIFNLCITH  193 (323)
Q Consensus       126 Lv~ll~~-~~~~~~~~a~~~L~~L~~~~~~----------~~~i~~~g~i~~Lv~lL~~~-~~~~~~~al~aL~~L~~~~  193 (323)
                      +...|.. +..++....+++++.|...++.          ...+...|++..|++.+..+ ++.+....+.+|..|+..+
T Consensus       194 i~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~  273 (461)
T KOG4199|consen  194 ILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRD  273 (461)
T ss_pred             HHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHH
Confidence            8867654 4557999999999999887763          45667788999999999985 7889999999999999999


Q ss_pred             chhHHHHhhCchHHHHHHhhcC------chHHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHh-ccCChhHHHHHHHH
Q 020640          194 ENKARAVRDGGVSVILKKIMDG------VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIR-ESTCDRNKENCIAI  266 (323)
Q Consensus       194 ~~~~~i~~~g~v~~Lv~ll~~~------~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~-~~~~~~~~~~a~~~  266 (323)
                      +.+..+.+.||+..|++++.+.      ++.+.++..|+.|+.+++++..|++.|+.+.++.++. ..+++.+.+.++.+
T Consensus       274 E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~  353 (461)
T KOG4199|consen  274 EICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAI  353 (461)
T ss_pred             HHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHH
Confidence            9999999999999999999974      3568899999999999999999999999999998775 45568899999999


Q ss_pred             HHHhcccChHhHHHHHhhcccHHHHHHHhhcC--CHHHHHHHHHHHHHHhcchhhcc
Q 020640          267 LHTICLSDRTKWKAMREEESTHGTISKLAQDG--TARAKRKATGILERLKRTVNLTH  321 (323)
Q Consensus       267 L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~~~~~A~~~L~~l~~~~~~~~  321 (323)
                      +.-||-..|++.+.++ +.|+-...++-++.-  ...+|++|+++++|+......+.
T Consensus       354 i~~l~LR~pdhsa~~i-e~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~  409 (461)
T KOG4199|consen  354 ISILCLRSPDHSAKAI-EAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENR  409 (461)
T ss_pred             HHHHHhcCcchHHHHH-hcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhcc
Confidence            9999999998766666 577777777766543  78899999999999987665544

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.78  E-value=1.5e-17  Score=157.89  Aligned_cols=278  Identities=22%  Similarity=0.221  Sum_probs=226.3

Q ss_pred             hHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccc
Q 020640           31 DHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIH  109 (323)
Q Consensus        31 ~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~  109 (323)
                      -.+|+.+.+|. .++.+|-.|...+..+|..+.+.+..+.+ .|+|+.|+.+|+      +.+.+++..|+.+|.||.+.
T Consensus       233 ~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrq-lggI~kLv~Ll~------~~~~evq~~acgaLRNLvf~  305 (717)
T KOG1048|consen  233 PTLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQ-LGGIPKLVALLD------HRNDEVQRQACGALRNLVFG  305 (717)
T ss_pred             cccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHH-hccHHHHHHHhc------CCcHHHHHHHHHHHHhhhcc
Confidence            46788899996 66889999999999999999888998999 999999999999      78999999999999999875


Q ss_pred             cc---hhhhhhccCCcHHHHHHHHhc-CCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhc-----------
Q 020640          110 DN---NKKLVAETPMVIPLLMDALRS-GTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEG-----------  174 (323)
Q Consensus       110 ~~---~~~~i~~~~g~i~~Lv~ll~~-~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~-----------  174 (323)
                      .+   |+..|.+.+| ++.++++|+. .+.++++...++||||+.++..+..++.. +++.|..-+-.+           
T Consensus       306 ~~~~~NKlai~~~~G-v~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~-al~tLt~~vI~P~Sgw~~~~~~~  383 (717)
T KOG1048|consen  306 KSTDSNKLAIKELNG-VPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIITS-ALSTLTDNVIIPHSGWEEEPAPR  383 (717)
T ss_pred             cCCcccchhhhhcCC-hHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHHH-HHHHHHHhhcccccccCCCCccc
Confidence            54   6888888887 8999999986 69999999999999999998778777765 577776654321           


Q ss_pred             ---CHhHHHHHHHHHHHhcc-CCchhHHHHhh-CchHHHHHHhhc--------CchHHHHHHHHHHHhcCHH--------
Q 020640          175 ---HQSAMKDVASAIFNLCI-THENKARAVRD-GGVSVILKKIMD--------GVHVDELLAILAMLSTNHR--------  233 (323)
Q Consensus       175 ---~~~~~~~al~aL~~L~~-~~~~~~~i~~~-g~v~~Lv~ll~~--------~~~~~~a~~~L~~l~~~~~--------  233 (323)
                         +..+..++.++|+|++. +.+.|.++-+. |.|..|+..++.        ....++|+.+|.|++-.-+        
T Consensus       384 ~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~  463 (717)
T KOG1048|consen  384 KAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYR  463 (717)
T ss_pred             ccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhh
Confidence               25678899999999988 55788888775 999999998873        2568999999999975210        


Q ss_pred             ------------------------HHHH----------------------HHhcCCHHHHHHHHhccCChhHHHHHHHHH
Q 020640          234 ------------------------AVEE----------------------IGDLGGVSCMLRIIRESTCDRNKENCIAIL  267 (323)
Q Consensus       234 ------------------------~~~~----------------------i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L  267 (323)
                                              .++.                      ++...+|.....++..+.++.+.++++++|
T Consensus       464 ~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaL  543 (717)
T KOG1048|consen  464 QVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGAL  543 (717)
T ss_pred             hHhhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhH
Confidence                                    0111                      111124556566676666688999999999


Q ss_pred             HHhcccCh----HhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhcch
Q 020640          268 HTICLSDR----TKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTV  317 (323)
Q Consensus       268 ~~L~~~~~----~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~  317 (323)
                      .||+....    ..+..++....+.+.|+++++.+++.+.+.++.+|+||+...
T Consensus       544 QNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~  597 (717)
T KOG1048|consen  544 QNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDI  597 (717)
T ss_pred             hhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCc
Confidence            99998764    234455578899999999999999999999999999998654

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.72  E-value=1.2e-15  Score=145.10  Aligned_cols=286  Identities=17%  Similarity=0.172  Sum_probs=222.2

Q ss_pred             hhhHHHHHHHHhc-CCchhHHHHHHHHHHHhccChh--hHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHH
Q 020640           29 DRDHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPS--FRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLN  105 (323)
Q Consensus        29 ~~~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~--~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~  105 (323)
                      ..+.|+.||.+|. ...+++..|+.+|+|+..++..  ++-.+.+ .++|+.++++|++     ..|.++++..+.+|+|
T Consensus       273 qlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKlai~~-~~Gv~~l~~~Lr~-----t~D~ev~e~iTg~LWN  346 (717)
T KOG1048|consen  273 QLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLAIKE-LNGVPTLVRLLRH-----TQDDEVRELITGILWN  346 (717)
T ss_pred             HhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchhhhh-cCChHHHHHHHHh-----hcchHHHHHHHHHHhc
Confidence            3477889999996 6689999999999999987776  8888999 9999999999985     2355566666666666


Q ss_pred             hc------------------------------------------------------c-ccchhhhhhccCCcHHHHHHHH
Q 020640          106 LS------------------------------------------------------I-HDNNKKLVAETPMVIPLLMDAL  130 (323)
Q Consensus       106 ls------------------------------------------------------~-~~~~~~~i~~~~g~i~~Lv~ll  130 (323)
                      |+                                                      . ..+.|+++.+..|.|..|+..+
T Consensus       347 LSS~D~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~i  426 (717)
T KOG1048|consen  347 LSSNDALKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSI  426 (717)
T ss_pred             ccchhHHHHHHHHHHHHHHHHhhcccccccCCCCcccccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHH
Confidence            54                                                      2 2345777778788899998887


Q ss_pred             hc------CCHHHHHHHHHHHHHhcCCCC--------------------------------chhh---------------
Q 020640          131 RS------GTIETRSNAAAALFTLSALDS--------------------------------NKEV---------------  157 (323)
Q Consensus       131 ~~------~~~~~~~~a~~~L~~L~~~~~--------------------------------~~~~---------------  157 (323)
                      ++      .+....++|..+|+||+-.-+                                -+.+               
T Consensus       427 q~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~  506 (717)
T KOG1048|consen  427 QTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERAT  506 (717)
T ss_pred             HHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccccccCCCcccccccccchhhhchhcccccCCccccc
Confidence            52      367889999999999973211                                0001               


Q ss_pred             -------hhccCChHHHHHHhhh-cCHhHHHHHHHHHHHhccCCc-----hhHHH-HhhCchHHHHHHhhcC--chHHHH
Q 020640          158 -------IGKSGALKPLIDLLDE-GHQSAMKDVASAIFNLCITHE-----NKARA-VRDGGVSVILKKIMDG--VHVDEL  221 (323)
Q Consensus       158 -------i~~~g~i~~Lv~lL~~-~~~~~~~~al~aL~~L~~~~~-----~~~~i-~~~g~v~~Lv~ll~~~--~~~~~a  221 (323)
                             +...-++..-+.+|.. .+..+.+.++++|.||+.+.-     .+..+ ..+.+.++|+++|..+  .+...+
T Consensus       507 ~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~  586 (717)
T KOG1048|consen  507 APKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSA  586 (717)
T ss_pred             CCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHH
Confidence                   1112233333344443 477899999999999988663     34444 4568999999999976  789999


Q ss_pred             HHHHHHHhcCHHHHHHHHhcCCHHHHHHHHhccCC-----hhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhh
Q 020640          222 LAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTC-----DRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQ  296 (323)
Q Consensus       222 ~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~~~~-----~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~  296 (323)
                      +++|.||+.+..+++.|. .++++.|++.|..+..     +++...++.+|+++...+....+.++ +.++++.|+.+..
T Consensus       587 a~~LrNls~d~rnk~lig-k~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~-~~~g~~kL~~I~~  664 (717)
T KOG1048|consen  587 AGALRNLSRDIRNKELIG-KYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLL-EIKGIPKLRLISK  664 (717)
T ss_pred             HHHHhhhccCchhhhhhh-cchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHH-hccChHHHHHHhc
Confidence            999999999999999988 6789999999987543     67888999999999988887767776 6899999999998


Q ss_pred             cC-CHHHHHHHHHHHHHHhcchhhccC
Q 020640          297 DG-TARAKRKATGILERLKRTVNLTHT  322 (323)
Q Consensus       297 ~~-~~~~~~~A~~~L~~l~~~~~~~~~  322 (323)
                      +. +++.-+.|...|..|-.|-.+.|.
T Consensus       665 s~~S~k~~kaAs~vL~~lW~y~eLh~~  691 (717)
T KOG1048|consen  665 SQHSPKEFKAASSVLDVLWQYKELHFK  691 (717)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHHHhhh
Confidence            87 789999999999998877766653

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.72  E-value=1.3e-15  Score=131.54  Aligned_cols=227  Identities=19%  Similarity=0.192  Sum_probs=188.0

Q ss_pred             hhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 020640           69 GESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTL  148 (323)
Q Consensus        69 ~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L  148 (323)
                      .+ .+-++.|+.+|+.     ++||.+++.++.++.+.+..+.++..+.+.|| ++.+..++.++++.+++.|+++|.|+
T Consensus         9 l~-~~~l~~Ll~lL~~-----t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Gg-i~lI~~lL~~p~~~vr~~AL~aL~Nl   81 (254)
T PF04826_consen    9 LE-AQELQKLLCLLES-----TEDPFIQEKALIALGNSAAFPFNQDIIRDLGG-ISLIGSLLNDPNPSVREKALNALNNL   81 (254)
T ss_pred             cC-HHHHHHHHHHHhc-----CCChHHHHHHHHHHHhhccChhHHHHHHHcCC-HHHHHHHcCCCChHHHHHHHHHHHhc
Confidence            45 6778999999985     56899999999999999999999999999875 99999999999999999999999999


Q ss_pred             cCCCCchhhhhccCChHHHHHHhhhc--CHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcC--chHHHHHHH
Q 020640          149 SALDSNKEVIGKSGALKPLIDLLDEG--HQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAI  224 (323)
Q Consensus       149 ~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~  224 (323)
                      +...+|+..+-.  .++.+++.+.+.  +..++..++++|.||+..++.+..+.  +.++.++.+|.+|  ..+..++.+
T Consensus        82 s~~~en~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~--~~i~~ll~LL~~G~~~~k~~vLk~  157 (254)
T PF04826_consen   82 SVNDENQEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA--NYIPDLLSLLSSGSEKTKVQVLKV  157 (254)
T ss_pred             CCChhhHHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH--hhHHHHHHHHHcCChHHHHHHHHH
Confidence            999999888754  477777765553  67889999999999998887766664  4799999999987  578899999


Q ss_pred             HHHHhcCHHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHhcccChH-------------hHHHHHhhcc-cHHH
Q 020640          225 LAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRT-------------KWKAMREEES-THGT  290 (323)
Q Consensus       225 L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~-------------~~~~~~~~~~-~i~~  290 (323)
                      |.||+.+++..+.++..++++.++.++..+.+......++..+.|+..+-..             ..-.++.+.+ +.+.
T Consensus       158 L~nLS~np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~  237 (254)
T PF04826_consen  158 LVNLSENPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLFGESSQLAKK  237 (254)
T ss_pred             HHHhccCHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHHccHHHHHHH
Confidence            9999999999999999999999999998765577889999999999543321             1112333333 6777


Q ss_pred             HHHHhhcCCHHHHHHH
Q 020640          291 ISKLAQDGTARAKRKA  306 (323)
Q Consensus       291 L~~ll~~~~~~~~~~A  306 (323)
                      |..+..+.++++|++.
T Consensus       238 l~~l~~h~d~ev~~~v  253 (254)
T PF04826_consen  238 LQALANHPDPEVKEQV  253 (254)
T ss_pred             HHHHHcCCCHHHhhhc
Confidence            7777777888887763

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.69  E-value=6.3e-16  Score=153.19  Aligned_cols=243  Identities=19%  Similarity=0.150  Sum_probs=201.2

Q ss_pred             hhhhHHHHHHHHhcC----------C---chhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHH
Q 020640           28 ADRDHFLSLLKKMSA----------T---LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPN   94 (323)
Q Consensus        28 ~~~~~i~~Lv~~l~~----------~---~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~   94 (323)
                      ++-|.++.+-+++.-          +   ...|.=|.++|.||+-++..|+..+....|+++.+|..|.      +...+
T Consensus       336 ~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~------s~pee  409 (2195)
T KOG2122|consen  336 NELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLI------SAPEE  409 (2195)
T ss_pred             HHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHh------cChHH
Confidence            556667666666631          1   1246779999999999999999888877999999999999      56678


Q ss_pred             HHHHHHHHHHHhccccc-hhhhhhccCCcHHHHHHH-HhcCCHHHHHHHHHHHHHhcCC-CCchhhhhc-cCChHHHHHH
Q 020640           95 LQEDVITTLLNLSIHDN-NKKLVAETPMVIPLLMDA-LRSGTIETRSNAAAALFTLSAL-DSNKEVIGK-SGALKPLIDL  170 (323)
Q Consensus        95 ~~~~a~~~L~~ls~~~~-~~~~i~~~~g~i~~Lv~l-l~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~-~g~i~~Lv~l  170 (323)
                      +....+.+|+||++..| +.+.+...-|.+..|+.. ++...+.+.+..+.+||||+.+ .+||..|.. .|++..||.+
T Consensus       410 L~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~  489 (2195)
T KOG2122|consen  410 LLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGT  489 (2195)
T ss_pred             HHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhh
Confidence            99999999999999888 555555544567777665 4556778899999999999866 579999988 9999999999


Q ss_pred             hhhc----CHhHHHHHHHHHHHhccC----CchhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhc-CHHHHHHHH
Q 020640          171 LDEG----HQSAMKDVASAIFNLCIT----HENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLST-NHRAVEEIG  239 (323)
Q Consensus       171 L~~~----~~~~~~~al~aL~~L~~~----~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~-~~~~~~~i~  239 (323)
                      |.-+    .-.+.+.+-++|+|.+..    .+.|+.+.+.+.+..|+..|++.  ++..++|++||||+. +++.++.++
T Consensus       490 LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~Lw  569 (2195)
T KOG2122|consen  490 LSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLW  569 (2195)
T ss_pred             ccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHH
Confidence            9753    567888999999998653    34566667789999999999987  789999999999988 799999999


Q ss_pred             hcCCHHHHHHHHhccCChhHHHHHHHHHHHhcccChHh
Q 020640          240 DLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTK  277 (323)
Q Consensus       240 ~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~  277 (323)
                      +.|+++.|..++.+.+ ..+-+-++.+|.||..+.+.+
T Consensus       570 D~gAv~mLrnLIhSKh-kMIa~GSaaALrNLln~RPAk  606 (2195)
T KOG2122|consen  570 DDGAVPMLRNLIHSKH-KMIAMGSAAALRNLLNFRPAK  606 (2195)
T ss_pred             hcccHHHHHHHHhhhh-hhhhhhHHHHHHHHhcCCchh
Confidence            9999999999999766 888999999999999988654

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.67  E-value=2e-14  Score=124.23  Aligned_cols=190  Identities=18%  Similarity=0.238  Sum_probs=165.6

Q ss_pred             hhhHHHHHHHHhc--CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHh
Q 020640           29 DRDHFLSLLKKMS--ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNL  106 (323)
Q Consensus        29 ~~~~i~~Lv~~l~--~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~l  106 (323)
                      +.+.++.|+..|+  +|+.++..|+.++.+.+. .+.++..+.+ .|+++.+.++|.      ++++.+++.|+.+|.|+
T Consensus        10 ~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~~nq~~Ir~-~Ggi~lI~~lL~------~p~~~vr~~AL~aL~Nl   81 (254)
T PF04826_consen   10 EAQELQKLLCLLESTEDPFIQEKALIALGNSAA-FPFNQDIIRD-LGGISLIGSLLN------DPNPSVREKALNALNNL   81 (254)
T ss_pred             CHHHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChhHHHHHHH-cCCHHHHHHHcC------CCChHHHHHHHHHHHhc
Confidence            3478899999996  679999999999999985 5778999999 999999999999      77899999999999999


Q ss_pred             ccccchhhhhhccCCcHHHHHHHHhcC--CHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHHH
Q 020640          107 SIHDNNKKLVAETPMVIPLLMDALRSG--TIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVAS  184 (323)
Q Consensus       107 s~~~~~~~~i~~~~g~i~~Lv~ll~~~--~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~  184 (323)
                      |.+.+++..+-.   .++.+.....+.  +.+++..+.++|.+|+..++....+..  .++.++.+|.+++..++..+++
T Consensus        82 s~~~en~~~Ik~---~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~--~i~~ll~LL~~G~~~~k~~vLk  156 (254)
T PF04826_consen   82 SVNDENQEQIKM---YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLAN--YIPDLLSLLSSGSEKTKVQVLK  156 (254)
T ss_pred             CCChhhHHHHHH---HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHh--hHHHHHHHHHcCChHHHHHHHH
Confidence            999999887743   466666655443  678999999999999987777666643  7999999999999999999999


Q ss_pred             HHHHhccCCchhHHHHhhCchHHHHHHhhcC---chHHHHHHHHHHHhcC
Q 020640          185 AIFNLCITHENKARAVRDGGVSVILKKIMDG---VHVDELLAILAMLSTN  231 (323)
Q Consensus       185 aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~---~~~~~a~~~L~~l~~~  231 (323)
                      +|.||+.++.....++..+++..++.++...   +....++.++.|+..+
T Consensus       157 ~L~nLS~np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~  206 (254)
T PF04826_consen  157 VLVNLSENPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN  206 (254)
T ss_pred             HHHHhccCHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999865   5677888888999775

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.61  E-value=1.5e-13  Score=124.04  Aligned_cols=278  Identities=16%  Similarity=0.179  Sum_probs=219.6

Q ss_pred             HHHHHHHhcCCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhccc--------cc-----------------
Q 020640           33 FLSLLKKMSATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSES--------KC-----------------   87 (323)
Q Consensus        33 i~~Lv~~l~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~--------~~-----------------   87 (323)
                      +...++++-++...+......+..+++ +|++-+.+..+..++..|.++|++.        +.                 
T Consensus       136 iDEYiEllYee~~ek~rGsa~ilqlar-NPdNLeeL~~NEt~l~ALaRVlREDWkks~el~TNIiyifFcfst~tkfh~l  214 (791)
T KOG1222|consen  136 IDEYIELLYEETSEKNRGSAAILQLAR-NPDNLEELVNNETLLMALARVLREDWKKSFELGTNIIYIFFCFSTYTKFHPL  214 (791)
T ss_pred             HHHHHHHHHhhchhhcccHHHHHHHhc-CcchHHHHHhhHHHHHHHHHHHHHHHHHhhccccceeeeeeeccccccccch
Confidence            778889886555577788888889995 7878777776466788888888640        00                 


Q ss_pred             ------------------------------------CCCCC---------------------HHHHHHHHHHHHHhcccc
Q 020640           88 ------------------------------------ENGIN---------------------PNLQEDVITTLLNLSIHD  110 (323)
Q Consensus        88 ------------------------------------~~~~~---------------------~~~~~~a~~~L~~ls~~~  110 (323)
                                                          |..++                     +.+...|+..|.|++.+-
T Consensus       215 i~~ykIGtLCmn~idhElkRye~w~~El~k~krs~de~p~netLk~e~dr~~kklk~~~~KQeqLLrva~ylLlNlAed~  294 (791)
T KOG1222|consen  215 IVQYKIGTLCMNAIDHELKRYEFWIAELKKTKRSTDEKPKNETLKEEIDRLNKKLKTAIRKQEQLLRVAVYLLLNLAEDI  294 (791)
T ss_pred             hhhhhHhHHHHHHHHHHHHHHHHHHHHHhhhhcccccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence                                                11112                     234455777788888776


Q ss_pred             chhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHHhc
Q 020640          111 NNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLC  190 (323)
Q Consensus       111 ~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~  190 (323)
                      .....+.... ++..|+..|...+.+........|..|+.+++|+..+.+.|+++.|++++...+++.+...+..|.||+
T Consensus       295 ~~ElKMrrkn-iV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlS  373 (791)
T KOG1222|consen  295 SVELKMRRKN-IVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLS  373 (791)
T ss_pred             hHHHHHHHHh-HHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhcc
Confidence            6666777764 799999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCchhHHHHhhCchHHHHHHhhcCchHHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHh
Q 020640          191 ITHENKARAVRDGGVSVILKKIMDGVHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTI  270 (323)
Q Consensus       191 ~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L  270 (323)
                      .+...+..++..|.+|.|..++.+..-..-|+.+|..++.+++.+..|..+++|+.+.+.+-.+.+.++.......-.||
T Consensus       374 FD~glr~KMv~~GllP~l~~ll~~d~~~~iA~~~lYh~S~dD~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl  453 (791)
T KOG1222|consen  374 FDSGLRPKMVNGGLLPHLASLLDSDTKHGIALNMLYHLSCDDDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINL  453 (791)
T ss_pred             ccccccHHHhhccchHHHHHHhCCcccchhhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHH
Confidence            99999999999999999999999887777799999999999999999999999999998887666566666655556677


Q ss_pred             cccChHhHHHHHhhcccHHHHHHHhhcC-CHHHHHHHHHHHHHHhcchh
Q 020640          271 CLSDRTKWKAMREEESTHGTISKLAQDG-TARAKRKATGILERLKRTVN  318 (323)
Q Consensus       271 ~~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~~A~~~L~~l~~~~~  318 (323)
                      |.+..+  .+++-+..++..|.+..-.. ++..    ...+++++.|..
T Consensus       454 ~lnkRN--aQlvceGqgL~~LM~ra~k~~D~lL----mK~vRniSqHeg  496 (791)
T KOG1222|consen  454 CLNKRN--AQLVCEGQGLDLLMERAIKSRDLLL----MKVVRNISQHEG  496 (791)
T ss_pred             Hhcccc--ceEEecCcchHHHHHHHhcccchHH----HHHHHHhhhccc
Confidence            776643  24555677888887764333 3332    235666666544

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=99.57  E-value=7.4e-13  Score=118.10  Aligned_cols=284  Identities=14%  Similarity=0.078  Sum_probs=212.1

Q ss_pred             hhHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCC-CCCHHHHHHHHHHHHHhc
Q 020640           30 RDHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCEN-GINPNLQEDVITTLLNLS  107 (323)
Q Consensus        30 ~~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~-~~~~~~~~~a~~~L~~ls  107 (323)
                      ++.+..|.+..+ .+.++-.+..++|.|.|.++.++|..|.+ .||-..++++|+..+-++ ..+.+....+...|.|-.
T Consensus        86 a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~-lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~  164 (604)
T KOG4500|consen   86 AEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFN-LGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYI  164 (604)
T ss_pred             HHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHh-cCCceehHhhhccccccCCccHHHHHHHHHHHHHHhh
Confidence            344454555444 34677888999999999999999999999 999888888887654211 224567777888888877


Q ss_pred             cccc-hhhhhhccCCcHHHHHH---------------------------------------------HHhc-CCHHHHHH
Q 020640          108 IHDN-NKKLVAETPMVIPLLMD---------------------------------------------ALRS-GTIETRSN  140 (323)
Q Consensus       108 ~~~~-~~~~i~~~~g~i~~Lv~---------------------------------------------ll~~-~~~~~~~~  140 (323)
                      .+.+ .+.+..+. |+++.|..                                             ++.+ -+++..+.
T Consensus       165 l~~~~l~aq~~~~-gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM  243 (604)
T KOG4500|consen  165 LDSRELRAQVADA-GVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEM  243 (604)
T ss_pred             CCcHHHHHHHHhc-ccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhH
Confidence            6655 56666664 46774432                                             2222 14555566


Q ss_pred             HHHHHHHhcCCCCchhhhhccCChHHHHHHh-------------------------------------------------
Q 020640          141 AAAALFTLSALDSNKEVIGKSGALKPLIDLL-------------------------------------------------  171 (323)
Q Consensus       141 a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL-------------------------------------------------  171 (323)
                      +..++...+.++..+-.+++.|.++.+++++                                                 
T Consensus       244 ~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw  323 (604)
T KOG4500|consen  244 IFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESW  323 (604)
T ss_pred             HHHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHH
Confidence            6666666666666555555555555555544                                                 


Q ss_pred             -hhcCHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhc-----C--chHHHHHHHHHHHhcCHHHHHHHHhcCC
Q 020640          172 -DEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMD-----G--VHVDELLAILAMLSTNHRAVEEIGDLGG  243 (323)
Q Consensus       172 -~~~~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~-----~--~~~~~a~~~L~~l~~~~~~~~~i~~~g~  243 (323)
                       .+++......+.-++.|+++.++++..+++.|.+..|+..+..     +  +.+-.++.+|+|+...-.+|..+..+|+
T Consensus       324 ~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nka~~~~aGv  403 (604)
T KOG4500|consen  324 FRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSNKAHFAPAGV  403 (604)
T ss_pred             hcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCchhhccccch
Confidence             3445566677788899999999999999999999999998863     2  4578899999999999899999999999


Q ss_pred             HHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHH-HHHHHHHHHHHHhcc
Q 020640          244 VSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTAR-AKRKATGILERLKRT  316 (323)
Q Consensus       244 i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~-~~~~A~~~L~~l~~~  316 (323)
                      .+.++.+++... ++++..-.+.+..+....+....++......++.|++|.++.+-. +--...++|.-|-+|
T Consensus       404 teaIL~~lk~~~-ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lIkH  476 (604)
T KOG4500|consen  404 TEAILLQLKLAS-PPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLIKH  476 (604)
T ss_pred             HHHHHHHHHhcC-CcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHHHh
Confidence            999999999654 999999999999998888766678888888999999999987533 555555555555544

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.56  E-value=3.9e-12  Score=121.56  Aligned_cols=275  Identities=15%  Similarity=0.148  Sum_probs=218.1

Q ss_pred             HHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccch
Q 020640           34 LSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNN  112 (323)
Q Consensus        34 ~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~  112 (323)
                      +.+...++ .+.+....++.+|..+... ......  . .+..+.|...|.      ++++.++..++..|.++..+.+.
T Consensus        41 ~~lf~~L~~~~~e~v~~~~~iL~~~l~~-~~~~~l--~-~~~~~~L~~gL~------h~~~~Vr~l~l~~l~~~~~~~~~  110 (503)
T PF10508_consen   41 PVLFDCLNTSNREQVELICDILKRLLSA-LSPDSL--L-PQYQPFLQRGLT------HPSPKVRRLALKQLGRIARHSEG  110 (503)
T ss_pred             HHHHHHHhhcChHHHHHHHHHHHHHHhc-cCHHHH--H-HHHHHHHHHHhc------CCCHHHHHHHHHHHHHHhcCCHH
Confidence            34666675 3344445566667776643 222222  3 467788888888      77899999999999999888877


Q ss_pred             hhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHHhccC
Q 020640          113 KKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCIT  192 (323)
Q Consensus       113 ~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~  192 (323)
                      ...++...++++.++.++.+++..+.+.|+.+|.+++.++.....+...+.+..|..++..++..++..+..++.+++..
T Consensus       111 ~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~  190 (503)
T PF10508_consen  111 AAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASH  190 (503)
T ss_pred             HHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhc
Confidence            66666666799999999999999999999999999999888888888888899999999988888999999999999887


Q ss_pred             CchhHH-HHhhCchHHHHHHhhcCc--hHHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHhccCChh-----HHHHHH
Q 020640          193 HENKAR-AVRDGGVSVILKKIMDGV--HVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDR-----NKENCI  264 (323)
Q Consensus       193 ~~~~~~-i~~~g~v~~Lv~ll~~~~--~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~-----~~~~a~  264 (323)
                      .+.... +.+.|.++.++..+++++  ++.+++.+|..|+..+.+...+.+.|+++.|+.++.+...+.     .--..+
T Consensus       191 S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~  270 (503)
T PF10508_consen  191 SPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRM  270 (503)
T ss_pred             CHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHH
Confidence            765555 456799999999998874  588999999999999999999999999999999998643333     233445


Q ss_pred             HHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhcchhhc
Q 020640          265 AILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTVNLT  320 (323)
Q Consensus       265 ~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~  320 (323)
                      ....+++...+......  ...++..|.+++.++++..+..|..++..++.+....
T Consensus       271 ~f~g~la~~~~~~v~~~--~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~  324 (503)
T PF10508_consen  271 KFFGNLARVSPQEVLEL--YPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGK  324 (503)
T ss_pred             HHHHHHHhcChHHHHHH--HHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHH
Confidence            67777777555433333  3567788888889999999999999999999776553

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.50  E-value=2.7e-11  Score=115.73  Aligned_cols=277  Identities=13%  Similarity=0.141  Sum_probs=214.1

Q ss_pred             hhHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhcc
Q 020640           30 RDHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSI  108 (323)
Q Consensus        30 ~~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~  108 (323)
                      .+..+.|...|. .++.+|.-++..|.++..++......+.+ .+.++.++..|.      +++.++...|+.+|.+++.
T Consensus        76 ~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~-~~l~~~i~~~L~------~~d~~Va~~A~~~L~~l~~  148 (503)
T PF10508_consen   76 PQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVD-NELLPLIIQCLR------DPDLSVAKAAIKALKKLAS  148 (503)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcC-ccHHHHHHHHHc------CCcHHHHHHHHHHHHHHhC
Confidence            456677777775 66889999999999999877766677778 999999999999      8899999999999999999


Q ss_pred             ccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCC-chhhhhccCChHHHHHHhhhcCHhHHHHHHHHHH
Q 020640          109 HDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDS-NKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIF  187 (323)
Q Consensus       109 ~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~-~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~  187 (323)
                      .+.....++..+ .+..|..++..++..++.++..++.+++...+ ....+.+.|.++.+++.++++|.-++.+++..|.
T Consensus       149 ~~~~~~~l~~~~-~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~  227 (503)
T PF10508_consen  149 HPEGLEQLFDSN-LLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLS  227 (503)
T ss_pred             CchhHHHHhCcc-hHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHH
Confidence            888777787765 58889999988888899999999999986554 4556666999999999999999999999999999


Q ss_pred             HhccCCchhHHHHhhCchHHHHHHhhcC--ch------HHHHHHHHHHHhcC-HHHHHHHHhcCCHHHHHHHHhccCChh
Q 020640          188 NLCITHENKARAVRDGGVSVILKKIMDG--VH------VDELLAILAMLSTN-HRAVEEIGDLGGVSCMLRIIRESTCDR  258 (323)
Q Consensus       188 ~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~------~~~a~~~L~~l~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~  258 (323)
                      .|+..+.+...+.+.|+++.|..++.+.  +.      .--.+....+++.. |....... -..+..+.+++.+. +..
T Consensus       228 ~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~-p~~~~~l~~~~~s~-d~~  305 (503)
T PF10508_consen  228 ELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELY-PAFLERLFSMLESQ-DPT  305 (503)
T ss_pred             HHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHH-HHHHHHHHHHhCCC-Chh
Confidence            9999889999999999999999999754  22      12233556667763 32211111 12344555666644 477


Q ss_pred             HHHHHHHHHHHhcccChHhHHHH-Hhhcc----cHHHHHHHhhcCCHHHHHHHHHHHHHHhcch
Q 020640          259 NKENCIAILHTICLSDRTKWKAM-REEES----THGTISKLAQDGTARAKRKATGILERLKRTV  317 (323)
Q Consensus       259 ~~~~a~~~L~~L~~~~~~~~~~~-~~~~~----~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~  317 (323)
                      .+..|..++..++...+++ ..+ ....+    .+........++..++|.++..+|.++....
T Consensus       306 ~~~~A~dtlg~igst~~G~-~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~  368 (503)
T PF10508_consen  306 IREVAFDTLGQIGSTVEGK-QLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSG  368 (503)
T ss_pred             HHHHHHHHHHHHhCCHHHH-HHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcC
Confidence            8999999999999887663 233 23233    3444445567778899999999999995443

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.44  E-value=1e-10  Score=106.03  Aligned_cols=279  Identities=17%  Similarity=0.175  Sum_probs=200.4

Q ss_pred             hhHHHHHHHHhc----CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHH
Q 020640           30 RDHFLSLLKKMS----ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLN  105 (323)
Q Consensus        30 ~~~i~~Lv~~l~----~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~  105 (323)
                      ..-+..+-+.++    .+...-..|+..|.|++. +......++. .+.+..|++.|.      ..+.++.......|..
T Consensus       259 k~e~dr~~kklk~~~~KQeqLLrva~ylLlNlAe-d~~~ElKMrr-kniV~mLVKaLd------r~n~~Ll~lv~~FLkK  330 (791)
T KOG1222|consen  259 KEEIDRLNKKLKTAIRKQEQLLRVAVYLLLNLAE-DISVELKMRR-KNIVAMLVKALD------RSNSSLLTLVIKFLKK  330 (791)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHH-HhHHHHHHHHHc------ccchHHHHHHHHHHHH
Confidence            345555656654    233445568889999995 5666777888 899999999999      5578999999999999


Q ss_pred             hccccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcC----------
Q 020640          106 LSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGH----------  175 (323)
Q Consensus       106 ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~----------  175 (323)
                      ||...+|+..+.+.+ .++.|++++...+++.+......|.||+.+..++.+++..|.+|.|+.++.++.          
T Consensus       331 LSIf~eNK~~M~~~~-iveKL~klfp~~h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~~~~iA~~~lY  409 (791)
T KOG1222|consen  331 LSIFDENKIVMEQNG-IVEKLLKLFPIQHPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDTKHGIALNMLY  409 (791)
T ss_pred             hhhhccchHHHHhcc-HHHHHHHhcCCCCHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCcccchhhhhhhh
Confidence            999999999999975 899999999999999999999999999999999999999999999999886321          


Q ss_pred             --------------------------------------------------------------------------------
Q 020640          176 --------------------------------------------------------------------------------  175 (323)
Q Consensus       176 --------------------------------------------------------------------------------  175 (323)
                                                                                                      
T Consensus       410 h~S~dD~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~D~lLmK~vR  489 (791)
T KOG1222|consen  410 HLSCDDDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRNAQLVCEGQGLDLLMERAIKSRDLLLMKVVR  489 (791)
T ss_pred             hhccCcHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhccccceEEecCcchHHHHHHHhcccchHHHHHHH
Confidence                                                                                            


Q ss_pred             -----------------------------HhHHHHHHHHHHHhccCCchhHHHHhh-CchHHHHHHhhcC----chHHHH
Q 020640          176 -----------------------------QSAMKDVASAIFNLCITHENKARAVRD-GGVSVILKKIMDG----VHVDEL  221 (323)
Q Consensus       176 -----------------------------~~~~~~al~aL~~L~~~~~~~~~i~~~-g~v~~Lv~ll~~~----~~~~~a  221 (323)
                                                   .++...++++|.||...+-.-..+++. ..+|-+-..|..+    +++-..
T Consensus       490 niSqHeg~tqn~FidyvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~  569 (791)
T KOG1222|consen  490 NISQHEGATQNMFIDYVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQI  569 (791)
T ss_pred             HhhhccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHH
Confidence                                         111111122222222211111111111 2222222223322    233444


Q ss_pred             HHHHHHHhcCHHHHHHHHhcCCHHHHHHHHhcc-CChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCH
Q 020640          222 LAILAMLSTNHRAVEEIGDLGGVSCMLRIIRES-TCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTA  300 (323)
Q Consensus       222 ~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~~-~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~  300 (323)
                      +-++.-++.+.++...+...|+|+.|+++++.. .+++..-+-.-++..+..++ ..++.++.+...-.-|+.++++.+.
T Consensus       570 vi~~GT~a~d~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He-~tr~~miket~~~AylIDLMHDkN~  648 (791)
T KOG1222|consen  570 VIACGTMARDLDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKHE-LTRRLMIKETALGAYLIDLMHDKNA  648 (791)
T ss_pred             HHHhhhhhhhhHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHHH-HHHHHHHhhccchHHHHHHHhcccH
Confidence            555555666677888888899999999999862 23556666666677777775 3467888888888999999999999


Q ss_pred             HHHHHHHHHHHHHhcchh
Q 020640          301 RAKRKATGILERLKRTVN  318 (323)
Q Consensus       301 ~~~~~A~~~L~~l~~~~~  318 (323)
                      ++++-+-.+|-.++.+..
T Consensus       649 eiRkVCDn~LdIiae~d~  666 (791)
T KOG1222|consen  649 EIRKVCDNALDIIAEHDK  666 (791)
T ss_pred             HHHHHHHHHHHHHHHhhH
Confidence            999988888888876643

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.41  E-value=1e-11  Score=95.28  Aligned_cols=116  Identities=15%  Similarity=0.273  Sum_probs=104.3

Q ss_pred             HHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcC-HHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHhcccC
Q 020640          198 RAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTN-HRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSD  274 (323)
Q Consensus       198 ~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~  274 (323)
                      .+++.|+++.++++++++  .++..++.+|.+++.. ++.+..+++.|+++.+++++.+++ ++++..++++|++++...
T Consensus         2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~-~~v~~~a~~~L~~l~~~~   80 (120)
T cd00020           2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSED-EEVVKAALWALRNLAAGP   80 (120)
T ss_pred             hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCC-HHHHHHHHHHHHHHccCc
Confidence            467889999999999987  6899999999999997 899999999999999999999754 999999999999999988


Q ss_pred             hHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 020640          275 RTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKR  315 (323)
Q Consensus       275 ~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~  315 (323)
                      +. ....+.+.|+++.|++++.+++..+++.|.++|.+|+.
T Consensus        81 ~~-~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~  120 (120)
T cd00020          81 ED-NKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS  120 (120)
T ss_pred             HH-HHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence            65 44555578999999999999999999999999999873

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.40  E-value=8.9e-12  Score=95.67  Aligned_cols=115  Identities=20%  Similarity=0.316  Sum_probs=103.4

Q ss_pred             hhhccCChHHHHHHhhhcCHhHHHHHHHHHHHhccC-CchhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcCH-
Q 020640          157 VIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCIT-HENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNH-  232 (323)
Q Consensus       157 ~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~-~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~~-  232 (323)
                      .+++.|+++.|++++.+++..++..++.+|++++.. ++.+..+++.|+++.++++|.++  .++..++++|.+++.++ 
T Consensus         2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~   81 (120)
T cd00020           2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE   81 (120)
T ss_pred             hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence            456789999999999999999999999999999998 57777888889999999999976  78999999999999974 


Q ss_pred             HHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHhcc
Q 020640          233 RAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICL  272 (323)
Q Consensus       233 ~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~  272 (323)
                      ..+..+.+.|+++.|++++.+.+ ..+++.++++|.+|+.
T Consensus        82 ~~~~~~~~~g~l~~l~~~l~~~~-~~~~~~a~~~l~~l~~  120 (120)
T cd00020          82 DNKLIVLEAGGVPKLVNLLDSSN-EDIQKNATGALSNLAS  120 (120)
T ss_pred             HHHHHHHHCCChHHHHHHHhcCC-HHHHHHHHHHHHHhhC
Confidence            67777888999999999999765 8999999999999873

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.34  E-value=1e-09  Score=104.64  Aligned_cols=280  Identities=14%  Similarity=0.217  Sum_probs=214.7

Q ss_pred             hhhhhHHHHHHHHhc--CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHH
Q 020640           27 EADRDHFLSLLKKMS--ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLL  104 (323)
Q Consensus        27 ~~~~~~i~~Lv~~l~--~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~  104 (323)
                      +..+..|+.|++.+.  .-.+.|+.|+..|..+++   .||..++.  .|+++|++.|++.    ..|+++...++.++.
T Consensus        18 ~s~aETI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vga--~Gmk~li~vL~~D----~~D~E~ik~~LdTl~   88 (970)
T KOG0946|consen   18 QSAAETIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVGA--QGMKPLIQVLQRD----YMDPEIIKYALDTLL   88 (970)
T ss_pred             ccHHhHHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHHH--cccHHHHHHHhhc----cCCHHHHHHHHHHHH
Confidence            455689999999995  338889999999999996   37777666  6799999999865    568999999999999


Q ss_pred             Hhccccc-------hh----------hhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC--CCchhhhhc-cCCh
Q 020640          105 NLSIHDN-------NK----------KLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSAL--DSNKEVIGK-SGAL  164 (323)
Q Consensus       105 ~ls~~~~-------~~----------~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~--~~~~~~i~~-~g~i  164 (323)
                      ++..+++       .+          ..+....+.+..++..+...+..++..++..+.++-..  .+.+..+.. +.+|
T Consensus        89 il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gI  168 (970)
T KOG0946|consen   89 ILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGI  168 (970)
T ss_pred             HHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhH
Confidence            9876553       12          24455667788999999999999999999999999644  344555555 8899


Q ss_pred             HHHHHHhhhcCHhHHHHHHHHHHHhccCCchhHHHHhh-CchHHHHHHhhcC------chHHHHHHHHHHHhcC-HHHHH
Q 020640          165 KPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRD-GGVSVILKKIMDG------VHVDELLAILAMLSTN-HRAVE  236 (323)
Q Consensus       165 ~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~i~~~-g~v~~Lv~ll~~~------~~~~~a~~~L~~l~~~-~~~~~  236 (323)
                      ..|+.+|++....++..++..|..|+.++...+.++.. ++...|..++.+.      -+.+.|+..|-||-.+ ..++.
T Consensus       169 S~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~  248 (970)
T KOG0946|consen  169 SKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQN  248 (970)
T ss_pred             HHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhh
Confidence            99999999999999999999999999999999998875 8999999999742      4789999999999995 67888


Q ss_pred             HHHhcCCHHHHHHHHhc---cC-----ChhHHHH----HHHHHHHhcccC-----hHhHHHHHhhcccHHHHHHHhhcC-
Q 020640          237 EIGDLGGVSCMLRIIRE---ST-----CDRNKEN----CIAILHTICLSD-----RTKWKAMREEESTHGTISKLAQDG-  298 (323)
Q Consensus       237 ~i~~~g~i~~Lv~ll~~---~~-----~~~~~~~----a~~~L~~L~~~~-----~~~~~~~~~~~~~i~~L~~ll~~~-  298 (323)
                      .|.+.+.|+.|.++|..   ++     +...+..    ++-++..+..-+     ......++...+++..|..++.++ 
T Consensus       249 ~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~  328 (970)
T KOG0946|consen  249 FFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPG  328 (970)
T ss_pred             HHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCC
Confidence            88888999999988864   22     1222222    333334433211     123335666889999999988776 


Q ss_pred             -CHHHHHHHHHHHHHHhc
Q 020640          299 -TARAKRKATGILERLKR  315 (323)
Q Consensus       299 -~~~~~~~A~~~L~~l~~  315 (323)
                       ...+...+.-.+...-+
T Consensus       329 vp~dIltesiitvAevVR  346 (970)
T KOG0946|consen  329 VPADILTESIITVAEVVR  346 (970)
T ss_pred             CcHhHHHHHHHHHHHHHH
Confidence             45566666555555443

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=99.33  E-value=1.6e-10  Score=104.22  Aligned_cols=252  Identities=15%  Similarity=0.098  Sum_probs=168.7

Q ss_pred             HHHHHHHHhccChhhHHHHhhhcC--CHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchhhhhhcc------CC
Q 020640           50 AAKELRLLTKRMPSFRALFGESHD--AIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAET------PM  121 (323)
Q Consensus        50 a~~~L~~l~~~~~~~~~~i~~~~g--~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~------~g  121 (323)
                      -+..+..+-+...+.|..+.+..|  ....++++|+.-    ++++++..+.+..+..+..++..+..++..      +.
T Consensus        30 ~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~~----~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~  105 (312)
T PF03224_consen   30 DLSLIKKLDKQSKEERRELLEEDGDQYASLFLNLLNKL----SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSD  105 (312)
T ss_dssp             HHHHHHHHHHHHH-------------------HHHHHH-------HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH-
T ss_pred             HHHHHHHHHCCCHHHHHHHHHhchhhHHHHHHHHHHHc----cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccch
Confidence            333444444433444444444122  366777888753    257899999999998876666544433321      12


Q ss_pred             cHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhh----cCHhHHHHHHHHHHHhccCCchhH
Q 020640          122 VIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDE----GHQSAMKDVASAIFNLCITHENKA  197 (323)
Q Consensus       122 ~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~----~~~~~~~~al~aL~~L~~~~~~~~  197 (323)
                      ....+++++.+++..+...++..|..|....+....-...+.++.+++++.+    ++......++.+|.+|...++.|.
T Consensus       106 ~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~  185 (312)
T PF03224_consen  106 PYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQ  185 (312)
T ss_dssp             -HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHH
T ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHH
Confidence            4667888888999999999999999998766554444335677888888875    345667899999999999999999


Q ss_pred             HHHhhCchHHHHHHh------hcC---chHHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHH
Q 020640          198 RAVRDGGVSVILKKI------MDG---VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILH  268 (323)
Q Consensus       198 ~i~~~g~v~~Lv~ll------~~~---~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~  268 (323)
                      .+.+.|+++.++.++      ...   .+...++-+++-|+.+++....+.+.+.++.|+++++....+++.+-++.++.
T Consensus       186 ~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~  265 (312)
T PF03224_consen  186 VFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILR  265 (312)
T ss_dssp             HHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHH
T ss_pred             HHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHH
Confidence            999999999999999      222   56889999999999999999999999999999999998666899999999999


Q ss_pred             HhcccChHhHHHHHhhcccHHHHHHHhhcC--CHHHHHH
Q 020640          269 TICLSDRTKWKAMREEESTHGTISKLAQDG--TARAKRK  305 (323)
Q Consensus       269 ~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~~~~~  305 (323)
                      ||....+......+...++.+.+-.+....  +++..+-
T Consensus       266 Nl~~~~~~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~ed  304 (312)
T PF03224_consen  266 NLLSKAPKSNIELMVLCGLLKTLQNLSERKWSDEDLTED  304 (312)
T ss_dssp             HTTSSSSTTHHHHHHHH-HHHHHHHHHSS--SSHHHHHH
T ss_pred             HHHhccHHHHHHHHHHccHHHHHHHHhcCCCCCHHHHHH
Confidence            999988642334444567777777776554  6666554

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=99.30  E-value=1.3e-09  Score=100.36  Aligned_cols=275  Identities=12%  Similarity=0.046  Sum_probs=198.1

Q ss_pred             HHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhcccc
Q 020640           32 HFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHD  110 (323)
Q Consensus        32 ~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~  110 (323)
                      ....++.+|. +|..+...|...|..+...+......... .-..+.|.+.|+.     ..+...+..++..|..|...+
T Consensus       102 ~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l-~~~~~~l~~~l~~-----~~~~~~~~~~v~~L~~LL~~~  175 (429)
T cd00256         102 TWEPFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDL-DYYFNWLKEQLNN-----ITNNDYVQTAARCLQMLLRVD  175 (429)
T ss_pred             chHHHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHH-HHHHHHHHHHhhc-----cCCcchHHHHHHHHHHHhCCc
Confidence            3455566774 66778889999999998654432111000 0122334444442     234677888889999999999


Q ss_pred             chhhhhhccCCcHHHHHHHHhcC--CHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhc-CHhHHHHHHHHHH
Q 020640          111 NNKKLVAETPMVIPLLMDALRSG--TIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEG-HQSAMKDVASAIF  187 (323)
Q Consensus       111 ~~~~~i~~~~g~i~~Lv~ll~~~--~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~al~aL~  187 (323)
                      +.|..+.+.+| ++.|+.+|+..  +...+..++-++|-|+..++....+...+.++.|+++++.. .+++.+-++.+|.
T Consensus       176 ~~R~~f~~~~~-v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~  254 (429)
T cd00256         176 EYRFAFVLADG-VPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFR  254 (429)
T ss_pred             hHHHHHHHccC-HHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            99999998775 89999999863  56889999999999999888777777789999999999974 6789999999999


Q ss_pred             HhccCC-------chhHHHHhhCchHHHHHHhhcC-----ch-------HHHHHHHHHHHhcC-----------------
Q 020640          188 NLCITH-------ENKARAVRDGGVSVILKKIMDG-----VH-------VDELLAILAMLSTN-----------------  231 (323)
Q Consensus       188 ~L~~~~-------~~~~~i~~~g~v~~Lv~ll~~~-----~~-------~~~a~~~L~~l~~~-----------------  231 (323)
                      ||...+       .....++..|. +.++..|...     ++       .+.--..+..+++.                 
T Consensus       255 Nll~~~~~~~~~~~~~~~mv~~~l-~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~  333 (429)
T cd00256         255 NLISKRVDREVKKTAALQMVQCKV-LKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPV  333 (429)
T ss_pred             HHhhcccccchhhhHHHHHHHcCh-HHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCC
Confidence            998743       12344555554 4555555532     11       11111222233321                 


Q ss_pred             -------HHHHHHHHhcC--CHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHH
Q 020640          232 -------HRAVEEIGDLG--GVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARA  302 (323)
Q Consensus       232 -------~~~~~~i~~~g--~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~  302 (323)
                             .++...|-+.+  ++..|++++..++++.+..-||.=+..++.+.|. -+.++.+-|+-..+++++.++++++
T Consensus       334 H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~-gr~i~~~lg~K~~vM~Lm~h~d~~V  412 (429)
T cd00256         334 HKSEKFWRENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPR-GKDVVEQLGGKQRVMRLLNHEDPNV  412 (429)
T ss_pred             CCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCcc-HHHHHHHcCcHHHHHHHhcCCCHHH
Confidence                   14666666654  5899999997565577788899999999999875 4677888999999999999999999


Q ss_pred             HHHHHHHHHHHhc
Q 020640          303 KRKATGILERLKR  315 (323)
Q Consensus       303 ~~~A~~~L~~l~~  315 (323)
                      +..|..+++.|.-
T Consensus       413 r~eAL~avQklm~  425 (429)
T cd00256         413 RYEALLAVQKLMV  425 (429)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999988753

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=99.26  E-value=1.4e-09  Score=97.53  Aligned_cols=282  Identities=13%  Similarity=0.050  Sum_probs=219.6

Q ss_pred             HHHHHHHHhc--CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCC--CCCHHHHHHHHHHHHHhc
Q 020640           32 HFLSLLKKMS--ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCEN--GINPNLQEDVITTLLNLS  107 (323)
Q Consensus        32 ~i~~Lv~~l~--~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~--~~~~~~~~~a~~~L~~ls  107 (323)
                      ..-.+++.+.  -.++.+......+...+ .++..+..+.+ .|.++.++++++....-.  ++.......++....-+.
T Consensus       224 l~~~l~~ll~~~v~~d~~eM~feila~~a-end~Vkl~la~-~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vlll  301 (604)
T KOG4500|consen  224 LVFMLLQLLPSMVREDIDEMIFEILAKAA-ENDLVKLSLAQ-NGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLL  301 (604)
T ss_pred             HHHHHHHHHHHhhccchhhHHHHHHHHHh-cCcceeeehhh-cchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhh
Confidence            3445666663  23566677788888888 57778889999 999999999997532100  223445666777777778


Q ss_pred             cccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhh-----cCHhHHHHH
Q 020640          108 IHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDE-----GHQSAMKDV  182 (323)
Q Consensus       108 ~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~-----~~~~~~~~a  182 (323)
                      .+++....+...+.++..++..+++.+...+..+.-++.|++..++++..+++.|.+..|+++|..     ++.+.+..+
T Consensus       302 tGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~  381 (604)
T KOG4500|consen  302 TGDESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHAC  381 (604)
T ss_pred             cCchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHH
Confidence            888888888886658899999999999999999999999999999999999999999999999875     467788999


Q ss_pred             HHHHHHhccCCchhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcC-HHHHHHHHhc-CCHHHHHHHHhccCChh
Q 020640          183 ASAIFNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTN-HRAVEEIGDL-GGVSCMLRIIRESTCDR  258 (323)
Q Consensus       183 l~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~-~~~~~~i~~~-g~i~~Lv~ll~~~~~~~  258 (323)
                      +.+|+||..--.++..++..|+++.++..++..  .+..+-++.++-+-.. +....++.++ ..+..|++--++++-..
T Consensus       382 lsALRnl~IPv~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aG  461 (604)
T KOG4500|consen  382 LSALRNLMIPVSNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAG  461 (604)
T ss_pred             HHHHHhccccCCchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccch
Confidence            999999999999999999999999999999865  6778888888776664 4455566655 46788888888655344


Q ss_pred             HHHHHHHHHHHhcccChH-hHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 020640          259 NKENCIAILHTICLSDRT-KWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKR  315 (323)
Q Consensus       259 ~~~~a~~~L~~L~~~~~~-~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~  315 (323)
                      +--.+-+.+.-+..+... .....+-..|++..++......+-..+..|.-+|..+..
T Consensus       462 v~gESnRll~~lIkHs~~kdv~~tvpksg~ik~~Vsm~t~~hi~mqnEalVal~~~~~  519 (604)
T KOG4500|consen  462 VAGESNRLLLGLIKHSKYKDVILTVPKSGGIKEKVSMFTKNHINMQNEALVALLSTES  519 (604)
T ss_pred             hhhhhhHHHHHHHHhhHhhhhHhhccccccHHHHHHHHHHhhHHHhHHHHHHHHHHHH
Confidence            777788888888877521 122334468899999999988888888888877776653

>PRK09687 putative lyase; Provisional

Probab=99.14  E-value=9.1e-09  Score=90.95  Aligned_cols=235  Identities=11%  Similarity=0.034  Sum_probs=144.5

Q ss_pred             hhhHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhc
Q 020640           29 DRDHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLS  107 (323)
Q Consensus        29 ~~~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls  107 (323)
                      ..-.++.|++.|. .+..+|..|+..|..+-.            ..+++.+..+++      ++++.++..|+.+|..+-
T Consensus        21 ~~~~~~~L~~~L~d~d~~vR~~A~~aL~~~~~------------~~~~~~l~~ll~------~~d~~vR~~A~~aLg~lg   82 (280)
T PRK09687         21 KKLNDDELFRLLDDHNSLKRISSIRVLQLRGG------------QDVFRLAIELCS------SKNPIERDIGADILSQLG   82 (280)
T ss_pred             hhccHHHHHHHHhCCCHHHHHHHHHHHHhcCc------------chHHHHHHHHHh------CCCHHHHHHHHHHHHhcC
Confidence            3346778888885 668889999999876652            345666777777      778999999999999885


Q ss_pred             cccchhhhhhccCCcHHHHHHH-HhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHH
Q 020640          108 IHDNNKKLVAETPMVIPLLMDA-LRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAI  186 (323)
Q Consensus       108 ~~~~~~~~i~~~~g~i~~Lv~l-l~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL  186 (323)
                      .....     . ..+++.|..+ ++++++.++..++.+|.++.......    ...+++.+...+.+++..++..++.+|
T Consensus        83 ~~~~~-----~-~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aL  152 (280)
T PRK09687         83 MAKRC-----Q-DNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFAL  152 (280)
T ss_pred             CCccc-----h-HHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence            43221     1 1246777766 56778899999999999885422111    122455666667777778888888887


Q ss_pred             HHhccCCchhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHhccCChhHHHHHH
Q 020640          187 FNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCI  264 (323)
Q Consensus       187 ~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~  264 (323)
                      ..+.          ...+++.|+.++++.  .++..|+.+|..+.....        .+++.|+.++.+.+ ..++..|+
T Consensus       153 g~~~----------~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~--------~~~~~L~~~L~D~~-~~VR~~A~  213 (280)
T PRK09687        153 SVIN----------DEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP--------DIREAFVAMLQDKN-EEIRIEAI  213 (280)
T ss_pred             hccC----------CHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH--------HHHHHHHHHhcCCC-hHHHHHHH
Confidence            6542          112566777777655  566667766666632110        12333444444322 44444444


Q ss_pred             HHHHHhcccChHhHHHH-------------------HhhcccHHHHHHHhh-cCCHHHHHHHHHHHHH
Q 020640          265 AILHTICLSDRTKWKAM-------------------REEESTHGTISKLAQ-DGTARAKRKATGILER  312 (323)
Q Consensus       265 ~~L~~L~~~~~~~~~~~-------------------~~~~~~i~~L~~ll~-~~~~~~~~~A~~~L~~  312 (323)
                      .+|..+-...  ....+                   +.+...++.|.+++. +++++++.+|.+.|..
T Consensus       214 ~aLg~~~~~~--av~~Li~~L~~~~~~~~a~~ALg~ig~~~a~p~L~~l~~~~~d~~v~~~a~~a~~~  279 (280)
T PRK09687        214 IGLALRKDKR--VLSVLIKELKKGTVGDLIIEAAGELGDKTLLPVLDTLLYKFDDNEIITKAIDKLKR  279 (280)
T ss_pred             HHHHccCChh--HHHHHHHHHcCCchHHHHHHHHHhcCCHhHHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence            4444321100  00000                   012346778888886 6688888888887753

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=99.05  E-value=5.4e-09  Score=94.25  Aligned_cols=214  Identities=19%  Similarity=0.124  Sum_probs=154.5

Q ss_pred             HHHHHHHHh---cCCchhHHHHHHHHHHHhccChhhHHHHhhhc-----CCHHHHHHhhcccccCCCCCHHHHHHHHHHH
Q 020640           32 HFLSLLKKM---SATLPDQTEAAKELRLLTKRMPSFRALFGESH-----DAIPQLLSPLSESKCENGINPNLQEDVITTL  103 (323)
Q Consensus        32 ~i~~Lv~~l---~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~-----g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L  103 (323)
                      ....++..|   .++.++..-.+..+..+...++.....|....     ....++++++.      .+|..++..|+.+|
T Consensus        56 ~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~------~~D~~i~~~a~~iL  129 (312)
T PF03224_consen   56 YASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLD------RNDSFIQLKAAFIL  129 (312)
T ss_dssp             ------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-------SSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhc------CCCHHHHHHHHHHH
Confidence            444455555   25577788899999999988876665555411     14677888777      66899999999999


Q ss_pred             HHhccccchhhhhhccCCcHHHHHHHHhc----CCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhh-----h-
Q 020640          104 LNLSIHDNNKKLVAETPMVIPLLMDALRS----GTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLD-----E-  173 (323)
Q Consensus       104 ~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~----~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~-----~-  173 (323)
                      ..+....+.+...... ++++.++..+++    .+.+.+..++.+|.+|...++.|..+.+.|+++.++.++.     . 
T Consensus       130 t~Ll~~~~~~~~~~~~-~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~  208 (312)
T PF03224_consen  130 TSLLSQGPKRSEKLVK-EALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSN  208 (312)
T ss_dssp             HHHHTSTTT--HHHHH-HHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH-------
T ss_pred             HHHHHcCCccccchHH-HHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCC
Confidence            9987666543333222 357778888765    3456678999999999999999999999999999999992     2 


Q ss_pred             -cCHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcC---chHHHHHHHHHHHhcCHH--HHHHHHhcCCHHHH
Q 020640          174 -GHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG---VHVDELLAILAMLSTNHR--AVEEIGDLGGVSCM  247 (323)
Q Consensus       174 -~~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~---~~~~~a~~~L~~l~~~~~--~~~~i~~~g~i~~L  247 (323)
                       .+..++.+++-++|.|+.+++....+...+.++.|++++++.   .+..-++.+|.|+...+.  ....++..|+++.+
T Consensus       209 ~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l  288 (312)
T PF03224_consen  209 SSGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTL  288 (312)
T ss_dssp             --HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHH
T ss_pred             CCchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHH
Confidence             256788999999999999999999999999999999999865   678889999999999754  88888888866655


Q ss_pred             HHHHh
Q 020640          248 LRIIR  252 (323)
Q Consensus       248 v~ll~  252 (323)
                      -.+..
T Consensus       289 ~~L~~  293 (312)
T PF03224_consen  289 QNLSE  293 (312)
T ss_dssp             HHHHS
T ss_pred             HHHhc
Confidence            55554

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=99.02  E-value=1e-07  Score=85.54  Aligned_cols=224  Identities=13%  Similarity=0.089  Sum_probs=173.6

Q ss_pred             CCCHHHHHHHHHHHHHhccccchhhhhhccCCcHHHHHHHHhc--CCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHH
Q 020640           90 GINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRS--GTIETRSNAAAALFTLSALDSNKEVIGKSGALKPL  167 (323)
Q Consensus        90 ~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~--~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~L  167 (323)
                      +++......++.+|..+...++.|..++...| +..++..+.+  .+..++.+.+-+++-|+.++.-.+.+...+.++.|
T Consensus       168 ~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg-~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~~~~li~~L  246 (442)
T KOG2759|consen  168 STNNDYIQFAARCLQTLLRVDEYRYAFVIADG-VSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLKRFDLIQDL  246 (442)
T ss_pred             cCCCchHHHHHHHHHHHhcCcchhheeeecCc-chhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHhhccHHHHH
Confidence            46778888999999999999999999999888 6778888843  37899999999999999988888888678999999


Q ss_pred             HHHhhhc-CHhHHHHHHHHHHHhccCCc---hh----HHHHhhCchHHHHHHhhcC-----ch-------HHHHHHHHHH
Q 020640          168 IDLLDEG-HQSAMKDVASAIFNLCITHE---NK----ARAVRDGGVSVILKKIMDG-----VH-------VDELLAILAM  227 (323)
Q Consensus       168 v~lL~~~-~~~~~~~al~aL~~L~~~~~---~~----~~i~~~g~v~~Lv~ll~~~-----~~-------~~~a~~~L~~  227 (323)
                      .+++++. ...+.+-++.++.|+....+   .+    ..++. +.+++-++.|..+     ++       ++.--.-...
T Consensus       247 ~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~-~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~  325 (442)
T KOG2759|consen  247 SDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVL-CKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQD  325 (442)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHh-cCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHh
Confidence            9999985 67789999999999988763   22    23333 4555666666532     22       2222222233


Q ss_pred             HhcC------------------------HHHHHHHHhcC--CHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHH
Q 020640          228 LSTN------------------------HRAVEEIGDLG--GVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAM  281 (323)
Q Consensus       228 l~~~------------------------~~~~~~i~~~g--~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~  281 (323)
                      |++.                        .++...+-+..  ++..|+++|+.++++.+.--||.=+.....+.|. -+.+
T Consensus       326 LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~-gk~v  404 (442)
T KOG2759|consen  326 LSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPE-GKAV  404 (442)
T ss_pred             hccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCch-HhHH
Confidence            3332                        14555555543  6999999999777677777888889999998876 5688


Q ss_pred             HhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhcc
Q 020640          282 REEESTHGTISKLAQDGTARAKRKATGILERLKRT  316 (323)
Q Consensus       282 ~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~  316 (323)
                      +.+.|+-+.+.+++.+++++++..|..++..|-.+
T Consensus       405 v~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~~  439 (442)
T KOG2759|consen  405 VEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMVH  439 (442)
T ss_pred             HHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHhh
Confidence            88999999999999999999999999999887643

>PRK09687 putative lyase; Provisional

Probab=98.99  E-value=3.5e-08  Score=87.27  Aligned_cols=195  Identities=14%  Similarity=0.069  Sum_probs=144.3

Q ss_pred             CHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCC
Q 020640           74 AIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDS  153 (323)
Q Consensus        74 ~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~  153 (323)
                      -++.|.++|.      +++..++..++..|..+..           ..+++.+..+++++++..+..++++|..|...+.
T Consensus        24 ~~~~L~~~L~------d~d~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~   86 (280)
T PRK09687         24 NDDELFRLLD------DHNSLKRISSIRVLQLRGG-----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKR   86 (280)
T ss_pred             cHHHHHHHHh------CCCHHHHHHHHHHHHhcCc-----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcc
Confidence            5788999998      8899999999999987742           2367788889999999999999999999864332


Q ss_pred             chhhhhccCChHHHHHH-hhhcCHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhc
Q 020640          154 NKEVIGKSGALKPLIDL-LDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLST  230 (323)
Q Consensus       154 ~~~~i~~~g~i~~Lv~l-L~~~~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~  230 (323)
                      .     ...+++.|..+ ++++++.++..|+.+|.+++......    ...+++.+...+.+.  .++..++.+|..+. 
T Consensus        87 ~-----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~-  156 (280)
T PRK09687         87 C-----QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVIN-  156 (280)
T ss_pred             c-----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccC-
Confidence            1     22367888877 56678999999999999986543221    111344566666654  68888888885442 


Q ss_pred             CHHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHH
Q 020640          231 NHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGIL  310 (323)
Q Consensus       231 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L  310 (323)
                               ...+++.|+.++++.+ +.++..|+.+|..+...++          ..++.|+..+.+.++.++..|.+.|
T Consensus       157 ---------~~~ai~~L~~~L~d~~-~~VR~~A~~aLg~~~~~~~----------~~~~~L~~~L~D~~~~VR~~A~~aL  216 (280)
T PRK09687        157 ---------DEAAIPLLINLLKDPN-GDVRNWAAFALNSNKYDNP----------DIREAFVAMLQDKNEEIRIEAIIGL  216 (280)
T ss_pred             ---------CHHHHHHHHHHhcCCC-HHHHHHHHHHHhcCCCCCH----------HHHHHHHHHhcCCChHHHHHHHHHH
Confidence                     2236899999999654 8899999999999844332          3455677777777777788777777


Q ss_pred             HHHhc
Q 020640          311 ERLKR  315 (323)
Q Consensus       311 ~~l~~  315 (323)
                      ..+..
T Consensus       217 g~~~~  221 (280)
T PRK09687        217 ALRKD  221 (280)
T ss_pred             HccCC
Confidence            66543

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.97  E-value=8.7e-08  Score=84.77  Aligned_cols=181  Identities=17%  Similarity=0.186  Sum_probs=155.5

Q ss_pred             CCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHHhccCCc-hhHHHHhhCchHHHHHH
Q 020640          133 GTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHE-NKARAVRDGGVSVILKK  211 (323)
Q Consensus       133 ~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~-~~~~i~~~g~v~~Lv~l  211 (323)
                      .+.+-+..|..-|..+..+-+|...+...|++.+++..+.+++..++..|++.|...+.+++ ....+++.|+++.|+.+
T Consensus        95 ~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~  174 (342)
T KOG2160|consen   95 VDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKI  174 (342)
T ss_pred             CCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHH
Confidence            47888889999999998888899999999999999999999999999999999999999886 45557888999999999


Q ss_pred             hhcC---chHHHHHHHHHHHhcC-HHHHHHHHhcCCHHHHHHHHhcc-CChhHHHHHHHHHHHhcccChHhHHHHHhhcc
Q 020640          212 IMDG---VHVDELLAILAMLSTN-HRAVEEIGDLGGVSCMLRIIRES-TCDRNKENCIAILHTICLSDRTKWKAMREEES  286 (323)
Q Consensus       212 l~~~---~~~~~a~~~L~~l~~~-~~~~~~i~~~g~i~~Lv~ll~~~-~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~  286 (323)
                      +.+.   +.+.+|+.+++.+-.+ +.+...|...++...|...+++. .+.+.|..++..+..|....... +.++...+
T Consensus       175 ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~-~d~~~~~~  253 (342)
T KOG2160|consen  175 LSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSD-EDIASSLG  253 (342)
T ss_pred             HccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhh-hhHHHHhh
Confidence            9865   5789999999999994 89999999998899999999973 44788999999999999987654 34666778


Q ss_pred             cHHHHHHHhhcCCHHHHHHHHHHHHHHh
Q 020640          287 THGTISKLAQDGTARAKRKATGILERLK  314 (323)
Q Consensus       287 ~i~~L~~ll~~~~~~~~~~A~~~L~~l~  314 (323)
                      +...+..+....+..+++.|...+-.+.
T Consensus       254 f~~~~~~l~~~l~~~~~e~~l~~~l~~l  281 (342)
T KOG2160|consen  254 FQRVLENLISSLDFEVNEAALTALLSLL  281 (342)
T ss_pred             hhHHHHHHhhccchhhhHHHHHHHHHHH
Confidence            8888888988888888888877655443

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=98.93  E-value=3.3e-07  Score=93.86  Aligned_cols=224  Identities=17%  Similarity=0.075  Sum_probs=140.2

Q ss_pred             hhhHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhc
Q 020640           29 DRDHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLS  107 (323)
Q Consensus        29 ~~~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls  107 (323)
                      +...++.|++.|. +++.+|..|+..|..+.           . .+.++.|+..|+      ++++.++..|+.+|..+.
T Consensus       619 ~~~~~~~L~~~L~D~d~~VR~~Av~~L~~~~-----------~-~~~~~~L~~aL~------D~d~~VR~~Aa~aL~~l~  680 (897)
T PRK13800        619 DAPSVAELAPYLADPDPGVRRTAVAVLTETT-----------P-PGFGPALVAALG------DGAAAVRRAAAEGLRELV  680 (897)
T ss_pred             cchhHHHHHHHhcCCCHHHHHHHHHHHhhhc-----------c-hhHHHHHHHHHc------CCCHHHHHHHHHHHHHHH
Confidence            4456778888885 67899999999998764           2 456888999998      788999999999988763


Q ss_pred             cccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHHH
Q 020640          108 IHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIF  187 (323)
Q Consensus       108 ~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~  187 (323)
                      ...          ...+.|...|+++++.++..++.+|..+...           -...|++.|.++++.++..|+.+|.
T Consensus       681 ~~~----------~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~-----------~~~~l~~~L~D~d~~VR~~Av~aL~  739 (897)
T PRK13800        681 EVL----------PPAPALRDHLGSPDPVVRAAALDVLRALRAG-----------DAALFAAALGDPDHRVRIEAVRALV  739 (897)
T ss_pred             hcc----------CchHHHHHHhcCCCHHHHHHHHHHHHhhccC-----------CHHHHHHHhcCCCHHHHHHHHHHHh
Confidence            211          1134566667777777777777777665321           1234555556666666666666655


Q ss_pred             Hhcc---------CC--chhHHHH---------hhCchHHHHHHhhcC--chHHHHHHHHHHHhcCHHHHHHHHhcCCHH
Q 020640          188 NLCI---------TH--ENKARAV---------RDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGVS  245 (323)
Q Consensus       188 ~L~~---------~~--~~~~~i~---------~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~  245 (323)
                      .+-.         ++  +.|....         ....++.|..+++++  .++..++..|..+...+.         .++
T Consensus       740 ~~~~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~~---------~~~  810 (897)
T PRK13800        740 SVDDVESVAGAATDENREVRIAVAKGLATLGAGGAPAGDAVRALTGDPDPLVRAAALAALAELGCPPD---------DVA  810 (897)
T ss_pred             cccCcHHHHHHhcCCCHHHHHHHHHHHHHhccccchhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcch---------hHH
Confidence            4310         00  0111110         001245566666655  456666666655533211         124


Q ss_pred             HHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 020640          246 CMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERL  313 (323)
Q Consensus       246 ~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l  313 (323)
                      .++..+++++ ..++..|+.+|..+...            ..++.|+.++.+.+..++..|+.+|..+
T Consensus       811 ~l~~aL~d~d-~~VR~~Aa~aL~~l~~~------------~a~~~L~~~L~D~~~~VR~~A~~aL~~~  865 (897)
T PRK13800        811 AATAALRASA-WQVRQGAARALAGAAAD------------VAVPALVEALTDPHLDVRKAAVLALTRW  865 (897)
T ss_pred             HHHHHhcCCC-hHHHHHHHHHHHhcccc------------chHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence            5667777543 77888888888765421            2447788888888888888888888776

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.88  E-value=5.6e-07  Score=79.72  Aligned_cols=226  Identities=16%  Similarity=0.114  Sum_probs=164.6

Q ss_pred             CchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccc-hhhhhhccCC
Q 020640           43 TLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDN-NKKLVAETPM  121 (323)
Q Consensus        43 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~-~~~~i~~~~g  121 (323)
                      +.+.+..|+..|..++ ++-+|...+.. .||..+++.++.      +.+..++..|+.++...+.+.. .+..+.+.+ 
T Consensus        96 ~le~ke~ald~Le~lv-e~iDnAndl~~-~ggl~~ll~~l~------~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~-  166 (342)
T KOG2160|consen   96 DLEDKEDALDNLEELV-EDIDNANDLIS-LGGLVPLLGYLE------NSDAELRELAARVIGTAVQNNPKSQEQVIELG-  166 (342)
T ss_pred             CHHHHHHHHHHHHHHH-HhhhhHHhHhh-ccCHHHHHHHhc------CCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcc-
Confidence            4677899999999999 57889999999 999999999998      7789999999999998887766 788888876 


Q ss_pred             cHHHHHHHHhcC-CHHHHHHHHHHHHHhcCCC-CchhhhhccCChHHHHHHhhh--cCHhHHHHHHHHHHHhccCCchhH
Q 020640          122 VIPLLMDALRSG-TIETRSNAAAALFTLSALD-SNKEVIGKSGALKPLIDLLDE--GHQSAMKDVASAIFNLCITHENKA  197 (323)
Q Consensus       122 ~i~~Lv~ll~~~-~~~~~~~a~~~L~~L~~~~-~~~~~i~~~g~i~~Lv~lL~~--~~~~~~~~al~aL~~L~~~~~~~~  197 (323)
                      +.+.|+.++.+. +...+..|..+++.|-.+. .....+...++...|.+.+.+  .+..++..++..+..|...+....
T Consensus       167 ~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~  246 (342)
T KOG2160|consen  167 ALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDE  246 (342)
T ss_pred             cHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhh
Confidence            599999999865 5577789999999998654 456777777889999999999  577889999999999987664433


Q ss_pred             HHHh-hCchHHHHHHhhcC--chHHHHHHHHHHHhcCHHHHHHH-Hh----cCCHHHHHHHHhccCChhHHHHHHHHHHH
Q 020640          198 RAVR-DGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEI-GD----LGGVSCMLRIIRESTCDRNKENCIAILHT  269 (323)
Q Consensus       198 ~i~~-~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~~~~~~~i-~~----~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~  269 (323)
                      .+.. .|....++.+....  ...+.+++++..+......+..+ ..    +..+.......+.......++.-+.-++.
T Consensus       247 d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~~~~~~~~~~~~~l~e~l~~~~q~~~~~~~~~~e~~l~~~l~~  326 (342)
T KOG2160|consen  247 DIASSLGFQRVLENLISSLDFEVNEAALTALLSLLSELSTRKELFVSLLNLEELLKSLIQIISDHAALEEERQLVNSLWE  326 (342)
T ss_pred             hHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444 46666666666544  56777777766665532222222 21    12344444444422224455556666666


Q ss_pred             hcccChHh
Q 020640          270 ICLSDRTK  277 (323)
Q Consensus       270 L~~~~~~~  277 (323)
                      .+...+..
T Consensus       327 ~~~e~~~~  334 (342)
T KOG2160|consen  327 ICGEVPSI  334 (342)
T ss_pred             HhcccHHH
Confidence            66655543

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.88  E-value=5.2e-07  Score=87.22  Aligned_cols=255  Identities=15%  Similarity=0.169  Sum_probs=191.1

Q ss_pred             hHHHHHHHHhc--CCchhHHHHHHHHHHHhc-cChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhc
Q 020640           31 DHFLSLLKKMS--ATLPDQTEAAKELRLLTK-RMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLS  107 (323)
Q Consensus        31 ~~i~~Lv~~l~--~~~~~~~~a~~~L~~l~~-~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls  107 (323)
                      ..+..|+.-|.  +|+..|.+|+..|+.+-. .+++.-..|-- .-.+|.|+.+|+.     ..+.+++..|+.+|.+|+
T Consensus       167 Sk~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv-~slvp~Lv~LL~~-----E~n~DIMl~AcRaltyl~  240 (1051)
T KOG0168|consen  167 SKAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPV-KSLVPVLVALLSH-----EHNFDIMLLACRALTYLC  240 (1051)
T ss_pred             HHHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccH-HHHHHHHHHHHhc-----cccHHHHHHHHHHHHHHH
Confidence            35666777774  467788888888776543 33433333333 5689999999985     568999999999999997


Q ss_pred             cccc-hhhhhhccCCcHHHHHHHHh-cCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHH
Q 020640          108 IHDN-NKKLVAETPMVIPLLMDALR-SGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASA  185 (323)
Q Consensus       108 ~~~~-~~~~i~~~~g~i~~Lv~ll~-~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~a  185 (323)
                      .--. ....++.. ++||.|+.-|. -+-.++.++++.+|..++...  -..+.+.|++...+..|+--+..+++.|+.+
T Consensus       241 evlP~S~a~vV~~-~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H--~~AiL~AG~l~a~LsylDFFSi~aQR~Alai  317 (1051)
T KOG0168|consen  241 EVLPRSSAIVVDE-HAIPVLLEKLLTIEYIDVAEQSLQALEKISRRH--PKAILQAGALSAVLSYLDFFSIHAQRVALAI  317 (1051)
T ss_pred             hhccchhheeecc-cchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhc--cHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            6544 55556664 57998887665 467899999999999998633  2456778999999999998888899999999


Q ss_pred             HHHhccCC--chhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhc----CHHHHHHHHhcCCHHHHHHHHhccC--
Q 020640          186 IFNLCITH--ENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLST----NHRAVEEIGDLGGVSCMLRIIREST--  255 (323)
Q Consensus       186 L~~L~~~~--~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~----~~~~~~~i~~~g~i~~Lv~ll~~~~--  255 (323)
                      -.|.|..=  +.-..+++  ++|.|..+|+..  .+.+.++.+++.++.    .++.-+.+...|.|....+++....  
T Consensus       318 aaN~Cksi~sd~f~~v~e--alPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~  395 (1051)
T KOG0168|consen  318 AANCCKSIRSDEFHFVME--ALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTI  395 (1051)
T ss_pred             HHHHHhcCCCccchHHHH--HHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCccc
Confidence            99998743  22223333  899999999854  677777777777765    4677788999999999999997532  


Q ss_pred             -ChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhc
Q 020640          256 -CDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQD  297 (323)
Q Consensus       256 -~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~  297 (323)
                       +..+....+..|.-+|++.+-.++.++ +.++...|..++..
T Consensus       396 Ls~~~~~~vIrmls~msS~~pl~~~tl~-k~~I~~~L~~il~g  437 (1051)
T KOG0168|consen  396 LSNGTYTGVIRMLSLMSSGSPLLFRTLL-KLDIADTLKRILQG  437 (1051)
T ss_pred             ccccchhHHHHHHHHHccCChHHHHHHH-HhhHHHHHHHHHhc
Confidence             245677788889999998876555554 56888888888754

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.85  E-value=3.2e-07  Score=88.59  Aligned_cols=230  Identities=15%  Similarity=0.128  Sum_probs=167.3

Q ss_pred             HHHHHHhhcccccCCCCCHHHHHHHHHHHH-Hhccccc-hhhhhhccCCcHHHHHHHHhcC-CHHHHHHHHHHHHHhc-C
Q 020640           75 IPQLLSPLSESKCENGINPNLQEDVITTLL-NLSIHDN-NKKLVAETPMVIPLLMDALRSG-TIETRSNAAAALFTLS-A  150 (323)
Q Consensus        75 i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~-~ls~~~~-~~~~i~~~~g~i~~Lv~ll~~~-~~~~~~~a~~~L~~L~-~  150 (323)
                      +..|+.=|+.     +.|+..|..|+.=|+ +|+...+ .-..+.-+ -++|.|+.+|+.+ +.++...||++|.+|+ .
T Consensus       169 ~kkLL~gL~~-----~~Des~Qleal~Elce~L~mgnEesLs~fpv~-slvp~Lv~LL~~E~n~DIMl~AcRaltyl~ev  242 (1051)
T KOG0168|consen  169 AKKLLQGLQA-----ESDESQQLEALTELCEMLSMGNEESLSGFPVK-SLVPVLVALLSHEHNFDIMLLACRALTYLCEV  242 (1051)
T ss_pred             HHHHHHhccc-----cCChHHHHHHHHHHHHHHhhcchhhhccccHH-HHHHHHHHHHhccccHHHHHHHHHHHHHHHhh
Confidence            4445544542     336666666665554 5665554 33333333 3899999999986 7899999999999998 4


Q ss_pred             CCCchhhhhccCChHHHHHHhh-hcCHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHH
Q 020640          151 LDSNKEVIGKSGALKPLIDLLD-EGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAM  227 (323)
Q Consensus       151 ~~~~~~~i~~~g~i~~Lv~lL~-~~~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~  227 (323)
                      .+.....+++.++||.|++-|. -...++.+.++.+|-.+++...  ..++++|++...+.+|+--  ..+..|+.+.+|
T Consensus       243 lP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~--~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN  320 (1051)
T KOG0168|consen  243 LPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP--KAILQAGALSAVLSYLDFFSIHAQRVALAIAAN  320 (1051)
T ss_pred             ccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc--HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5777888899999999998655 4788899999999999987554  5678999999999998733  679999999999


Q ss_pred             HhcC--HHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHhcc---cChHhHHHHHhhcccHHHHHHHhhcC----
Q 020640          228 LSTN--HRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICL---SDRTKWKAMREEESTHGTISKLAQDG----  298 (323)
Q Consensus       228 l~~~--~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~---~~~~~~~~~~~~~~~i~~L~~ll~~~----  298 (323)
                      +|..  ++.=..+++  .+|.|..++...+ .+..+.++-++..++.   +.+++..++. ..+.+....+|+.-.    
T Consensus       321 ~Cksi~sd~f~~v~e--alPlL~~lLs~~D-~k~ies~~ic~~ri~d~f~h~~~kLdql~-s~dLi~~~~qLlsvt~t~L  396 (1051)
T KOG0168|consen  321 CCKSIRSDEFHFVME--ALPLLTPLLSYQD-KKPIESVCICLTRIADGFQHGPDKLDQLC-SHDLITNIQQLLSVTPTIL  396 (1051)
T ss_pred             HHhcCCCccchHHHH--HHHHHHHHHhhcc-chhHHHHHHHHHHHHHhcccChHHHHHHh-chhHHHHHHHHHhcCcccc
Confidence            9995  555555554  4899999999655 8888998888888865   4455666665 467777777776443    


Q ss_pred             CHHHHHHHHHHHHHHhcc
Q 020640          299 TARAKRKATGILERLKRT  316 (323)
Q Consensus       299 ~~~~~~~A~~~L~~l~~~  316 (323)
                      +..+..--.++|..|+.-
T Consensus       397 s~~~~~~vIrmls~msS~  414 (1051)
T KOG0168|consen  397 SNGTYTGVIRMLSLMSSG  414 (1051)
T ss_pred             cccchhHHHHHHHHHccC
Confidence            233445555566666543

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=98.84  E-value=9.4e-07  Score=90.56  Aligned_cols=225  Identities=16%  Similarity=0.128  Sum_probs=142.1

Q ss_pred             hhHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhcc
Q 020640           30 RDHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSI  108 (323)
Q Consensus        30 ~~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~  108 (323)
                      .+.++.|+..|+ ++..+|..|+..|..+....           ...+.|...|.      ++++.++..++.+|..+..
T Consensus       651 ~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~-----------~~~~~L~~~L~------~~d~~VR~~A~~aL~~~~~  713 (897)
T PRK13800        651 PGFGPALVAALGDGAAAVRRAAAEGLRELVEVL-----------PPAPALRDHLG------SPDPVVRAAALDVLRALRA  713 (897)
T ss_pred             hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc-----------CchHHHHHHhc------CCCHHHHHHHHHHHHhhcc
Confidence            357788888886 56888999988887774211           11234555555      4556666666665554421


Q ss_pred             cc-----------c--hhh----hhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHh
Q 020640          109 HD-----------N--NKK----LVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLL  171 (323)
Q Consensus       109 ~~-----------~--~~~----~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL  171 (323)
                      .+           +  .|.    .+...+ ..+.|..++.+++++++..++.+|..+....        ...++.|..++
T Consensus       714 ~~~~~l~~~L~D~d~~VR~~Av~aL~~~~-~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~--------~~~~~~L~~ll  784 (897)
T PRK13800        714 GDAALFAAALGDPDHRVRIEAVRALVSVD-DVESVAGAATDENREVRIAVAKGLATLGAGG--------APAGDAVRALT  784 (897)
T ss_pred             CCHHHHHHHhcCCCHHHHHHHHHHHhccc-CcHHHHHHhcCCCHHHHHHHHHHHHHhcccc--------chhHHHHHHHh
Confidence            00           0  000    000001 1233445555556666666666665553321        12367788888


Q ss_pred             hhcCHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHH
Q 020640          172 DEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLR  249 (323)
Q Consensus       172 ~~~~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~  249 (323)
                      +++++.++..|+.+|..+....         ..++.++..+.++  .++..|+.+|..+..          ...++.|+.
T Consensus       785 ~D~d~~VR~aA~~aLg~~g~~~---------~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~----------~~a~~~L~~  845 (897)
T PRK13800        785 GDPDPLVRAAALAALAELGCPP---------DDVAAATAALRASAWQVRQGAARALAGAAA----------DVAVPALVE  845 (897)
T ss_pred             cCCCHHHHHHHHHHHHhcCCcc---------hhHHHHHHHhcCCChHHHHHHHHHHHhccc----------cchHHHHHH
Confidence            8888888888888887763221         1224577777766  578888888876542          234589999


Q ss_pred             HHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHH
Q 020640          250 IIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILE  311 (323)
Q Consensus       250 ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~  311 (323)
                      ++++.+ ..++..|+.+|..+. .++          ...+.|...+.++++.+++.|..+|.
T Consensus       846 ~L~D~~-~~VR~~A~~aL~~~~-~~~----------~a~~~L~~al~D~d~~Vr~~A~~aL~  895 (897)
T PRK13800        846 ALTDPH-LDVRKAAVLALTRWP-GDP----------AARDALTTALTDSDADVRAYARRALA  895 (897)
T ss_pred             HhcCCC-HHHHHHHHHHHhccC-CCH----------HHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence            999765 899999999999972 121          24567778899999999999999886

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=98.74  E-value=5.2e-06  Score=76.90  Aligned_cols=228  Identities=14%  Similarity=0.085  Sum_probs=163.3

Q ss_pred             CCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchhhh-hhcc----CCcHHHHHHHHhcCCHHHHHHHHHHHHH
Q 020640           73 DAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKL-VAET----PMVIPLLMDALRSGTIETRSNAAAALFT  147 (323)
Q Consensus        73 g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~-i~~~----~g~i~~Lv~ll~~~~~~~~~~a~~~L~~  147 (323)
                      ..+..++++|..     ....++..+.+..+.-+...++.+.. +.+.    ......++.+|..++..+...++.+|..
T Consensus        53 ~y~~~~l~ll~~-----~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~  127 (429)
T cd00256          53 QYVKTFVNLLSQ-----IDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAK  127 (429)
T ss_pred             HHHHHHHHHHhc-----cCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHH
Confidence            356778888875     45678888888888877666555443 3332    3456677889988888999999999999


Q ss_pred             hcCCCCchhhhhc-cCChHHHHHHhhhc-CHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcC----chHHHH
Q 020640          148 LSALDSNKEVIGK-SGALKPLIDLLDEG-HQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG----VHVDEL  221 (323)
Q Consensus       148 L~~~~~~~~~i~~-~g~i~~Lv~lL~~~-~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~----~~~~~a  221 (323)
                      +.........-.. .-..+-|...++.. +...+.-++.+|.+|...++.|..+.+.++++.|+.+|+..    .+...+
T Consensus       128 l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~  207 (429)
T cd00256         128 LACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQS  207 (429)
T ss_pred             HHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHH
Confidence            9654322111000 11223344444443 46677788899999999999999999988999999999863    568889


Q ss_pred             HHHHHHHhcCHHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHhcccCh-----HhHHHHHhhcccHHHHHHHhh
Q 020640          222 LAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDR-----TKWKAMREEESTHGTISKLAQ  296 (323)
Q Consensus       222 ~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~-----~~~~~~~~~~~~i~~L~~ll~  296 (323)
                      +-+++-|+..++....+.+.+.|+.|+++++....+++.+-++.+|.||...+.     ......+.+.|..+.+..+..
T Consensus       208 ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~  287 (429)
T cd00256         208 IFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQ  287 (429)
T ss_pred             HHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhc
Confidence            999999999988888887789999999999976668899999999999988541     123334445566665655554


Q ss_pred             cC--CHHHHHH
Q 020640          297 DG--TARAKRK  305 (323)
Q Consensus       297 ~~--~~~~~~~  305 (323)
                      ..  ++++.+-
T Consensus       288 rk~~DedL~ed  298 (429)
T cd00256         288 RKYDDEDLTDD  298 (429)
T ss_pred             CCCCcHHHHHH
Confidence            43  5555443

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.73  E-value=1.2e-06  Score=84.69  Aligned_cols=251  Identities=16%  Similarity=0.182  Sum_probs=159.8

Q ss_pred             HHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhcccc
Q 020640           32 HFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHD  110 (323)
Q Consensus        32 ~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~  110 (323)
                      .++.+.+-+. +++..|.-|+.+|.+++  +++...      ..++.+.++|.      ++++.++..|+.++..+....
T Consensus        80 ~~n~l~kdl~~~n~~~~~lAL~~l~~i~--~~~~~~------~l~~~v~~ll~------~~~~~VRk~A~~~l~~i~~~~  145 (526)
T PF01602_consen   80 IINSLQKDLNSPNPYIRGLALRTLSNIR--TPEMAE------PLIPDVIKLLS------DPSPYVRKKAALALLKIYRKD  145 (526)
T ss_dssp             HHHHHHHHHCSSSHHHHHHHHHHHHHH---SHHHHH------HHHHHHHHHHH------SSSHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHhhcCCCHHHHHHHHhhhhhhc--ccchhh------HHHHHHHHHhc------CCchHHHHHHHHHHHHHhccC
Confidence            5566666664 56788999999999988  344332      24566788888      778999999999998886543


Q ss_pred             chhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHHhc
Q 020640          111 NNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLC  190 (323)
Q Consensus       111 ~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~  190 (323)
                      ..   .+... +++.+..++.+.++.++..|+.++..+...++....+. ...++.|.+++...++-.+...++.|..++
T Consensus       146 p~---~~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~~~-~~~~~~L~~~l~~~~~~~q~~il~~l~~~~  220 (526)
T PF01602_consen  146 PD---LVEDE-LIPKLKQLLSDKDPSVVSAALSLLSEIKCNDDSYKSLI-PKLIRILCQLLSDPDPWLQIKILRLLRRYA  220 (526)
T ss_dssp             HC---CHHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHHHCTHHHHTTHH-HHHHHHHHHHHTCCSHHHHHHHHHHHTTST
T ss_pred             HH---HHHHH-HHHHHhhhccCCcchhHHHHHHHHHHHccCcchhhhhH-HHHHHHhhhcccccchHHHHHHHHHHHhcc
Confidence            22   22222 57888899988999999999999999911111100111 223444455555677778888888888777


Q ss_pred             cCCchhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHH
Q 020640          191 ITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILH  268 (323)
Q Consensus       191 ~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~  268 (323)
                      ........-  ...++.+..++++.  .+...++.++..+...+.     .-..+++.|+.++.+ +++.++..++..|.
T Consensus       221 ~~~~~~~~~--~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~-----~~~~~~~~L~~lL~s-~~~nvr~~~L~~L~  292 (526)
T PF01602_consen  221 PMEPEDADK--NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE-----LLQKAINPLIKLLSS-SDPNVRYIALDSLS  292 (526)
T ss_dssp             SSSHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH-----HHHHHHHHHHHHHTS-SSHHHHHHHHHHHH
T ss_pred             cCChhhhhH--HHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH-----HHHhhHHHHHHHhhc-ccchhehhHHHHHH
Confidence            655433211  23555666666644  567777777777777655     222446778888874 33668888888888


Q ss_pred             HhcccChHhHHHHHhhcccHHHHHHHhh-cCCHHHHHHHHHHHHHHhcc
Q 020640          269 TICLSDRTKWKAMREEESTHGTISKLAQ-DGTARAKRKATGILERLKRT  316 (323)
Q Consensus       269 ~L~~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~A~~~L~~l~~~  316 (323)
                      .++...+.   .+ .   .....+..+. +++..++.++..+|..++..
T Consensus       293 ~l~~~~~~---~v-~---~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~  334 (526)
T PF01602_consen  293 QLAQSNPP---AV-F---NQSLILFFLLYDDDPSIRKKALDLLYKLANE  334 (526)
T ss_dssp             HHCCHCHH---HH-G---THHHHHHHHHCSSSHHHHHHHHHHHHHH--H
T ss_pred             Hhhcccch---hh-h---hhhhhhheecCCCChhHHHHHHHHHhhcccc
Confidence            88877632   12 1   2222233444 66777777777777777653

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.72  E-value=1.4e-06  Score=83.81  Aligned_cols=215  Identities=16%  Similarity=0.169  Sum_probs=170.9

Q ss_pred             cCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchhhhhhccCCcHHHHHHHHhcC--CHHHHHHHHHHHHHhc
Q 020640           72 HDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSG--TIETRSNAAAALFTLS  149 (323)
Q Consensus        72 ~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~--~~~~~~~a~~~L~~L~  149 (323)
                      +..|+.|++-+.+     +.-.+-++.|+..|..+|.  .+|..+... | ++.++..|+..  +++....+..++.++.
T Consensus        21 aETI~kLcDRves-----sTL~eDRR~A~rgLKa~sr--kYR~~Vga~-G-mk~li~vL~~D~~D~E~ik~~LdTl~il~   91 (970)
T KOG0946|consen   21 AETIEKLCDRVES-----STLLEDRRDAVRGLKAFSR--KYREEVGAQ-G-MKPLIQVLQRDYMDPEIIKYALDTLLILT   91 (970)
T ss_pred             HhHHHHHHHHHhh-----ccchhhHHHHHHHHHHHHH--HHHHHHHHc-c-cHHHHHHHhhccCCHHHHHHHHHHHHHHH
Confidence            3468888888875     4457789999999998875  577777775 4 78899999764  8999999999999997


Q ss_pred             CCCC------c-h----------hhhh-ccCChHHHHHHhhhcCHhHHHHHHHHHHHhccCC--chhHHHHhh-CchHHH
Q 020640          150 ALDS------N-K----------EVIG-KSGALKPLIDLLDEGHQSAMKDVASAIFNLCITH--ENKARAVRD-GGVSVI  208 (323)
Q Consensus       150 ~~~~------~-~----------~~i~-~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~--~~~~~i~~~-g~v~~L  208 (323)
                      .+++      + +          ..+. ..+-|..|+..+...+-.++.+++..|.+|-...  +.+..++.. -+|..|
T Consensus        92 ~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~l  171 (970)
T KOG0946|consen   92 SHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKL  171 (970)
T ss_pred             hcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHH
Confidence            6653      1 1          2333 3788999999999999999999999999995544  455556655 799999


Q ss_pred             HHHhhcC--chHHHHHHHHHHHhcC-HHHHHHHHhcCCHHHHHHHHhccC---ChhHHHHHHHHHHHhcccChHhHHHHH
Q 020640          209 LKKIMDG--VHVDELLAILAMLSTN-HRAVEEIGDLGGVSCMLRIIREST---CDRNKENCIAILHTICLSDRTKWKAMR  282 (323)
Q Consensus       209 v~ll~~~--~~~~~a~~~L~~l~~~-~~~~~~i~~~g~i~~Lv~ll~~~~---~~~~~~~a~~~L~~L~~~~~~~~~~~~  282 (323)
                      +.+|.+.  .++..++-.|..+..+ +..++.++=+.+...|..++....   ..-+.+-|+..|.||-.++..+ ..++
T Consensus       172 mdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SN-Q~~F  250 (970)
T KOG0946|consen  172 MDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISN-QNFF  250 (970)
T ss_pred             HHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcch-hhHH
Confidence            9999987  5788899999999996 555555555688999999997632   2357899999999999988654 5778


Q ss_pred             hhcccHHHHHHHhh
Q 020640          283 EEESTHGTISKLAQ  296 (323)
Q Consensus       283 ~~~~~i~~L~~ll~  296 (323)
                      ++.+.++.|.+++.
T Consensus       251 rE~~~i~rL~klL~  264 (970)
T KOG0946|consen  251 REGSYIPRLLKLLS  264 (970)
T ss_pred             hccccHHHHHhhcC
Confidence            89999999998864

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.70  E-value=1.7e-06  Score=83.62  Aligned_cols=251  Identities=15%  Similarity=0.181  Sum_probs=175.7

Q ss_pred             HHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhcccc
Q 020640           32 HFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHD  110 (323)
Q Consensus        32 ~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~  110 (323)
                      .++.+.+.+. .++.+|..|+.++.++...+++.-   .. . .++.+.++|.      +.++.++..|+.++..+...+
T Consensus       115 l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~---~~-~-~~~~l~~lL~------d~~~~V~~~a~~~l~~i~~~~  183 (526)
T PF01602_consen  115 LIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLV---ED-E-LIPKLKQLLS------DKDPSVVSAALSLLSEIKCND  183 (526)
T ss_dssp             HHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCH---HG-G-HHHHHHHHTT------HSSHHHHHHHHHHHHHHHCTH
T ss_pred             HHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHH---HH-H-HHHHHhhhcc------CCcchhHHHHHHHHHHHccCc
Confidence            4555666664 668999999999999998776532   22 2 5888999997      778999999999999991111


Q ss_pred             chhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHHhc
Q 020640          111 NNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLC  190 (323)
Q Consensus       111 ~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~  190 (323)
                      +....+..  .+++.|.+++...++-.+...++.+..++........-  ...++.+..++++.++.+...+.+++..+.
T Consensus       184 ~~~~~~~~--~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~--~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~  259 (526)
T PF01602_consen  184 DSYKSLIP--KLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK--NRIIEPLLNLLQSSSPSVVYEAIRLIIKLS  259 (526)
T ss_dssp             HHHTTHHH--HHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             chhhhhHH--HHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH--HHHHHHHHHHhhccccHHHHHHHHHHHHhh
Confidence            11112222  14566666667889999999999999887654322211  457888999999888999999999999887


Q ss_pred             cCCchhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHH
Q 020640          191 ITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILH  268 (323)
Q Consensus       191 ~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~  268 (323)
                      ...+     .-..+++.|..++.++  +++..++..|..++...  ...+.   .....+..+..+++..++..++.+|.
T Consensus       260 ~~~~-----~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~--~~~v~---~~~~~~~~l~~~~d~~Ir~~~l~lL~  329 (526)
T PF01602_consen  260 PSPE-----LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN--PPAVF---NQSLILFFLLYDDDPSIRKKALDLLY  329 (526)
T ss_dssp             SSHH-----HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC--HHHHG---THHHHHHHHHCSSSHHHHHHHHHHHH
T ss_pred             cchH-----HHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc--chhhh---hhhhhhheecCCCChhHHHHHHHHHh
Confidence            6555     3334778899999876  57888999999998843  22222   23334445553344889999999999


Q ss_pred             HhcccChHhHHHHHhhcccHHHHHHHhhcC-CHHHHHHHHHHHHHHhc
Q 020640          269 TICLSDRTKWKAMREEESTHGTISKLAQDG-TARAKRKATGILERLKR  315 (323)
Q Consensus       269 ~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~~A~~~L~~l~~  315 (323)
                      .++...  ....      +++.|.+.+.+. ++..+..+...+..++.
T Consensus       330 ~l~~~~--n~~~------Il~eL~~~l~~~~d~~~~~~~i~~I~~la~  369 (526)
T PF01602_consen  330 KLANES--NVKE------ILDELLKYLSELSDPDFRRELIKAIGDLAE  369 (526)
T ss_dssp             HH--HH--HHHH------HHHHHHHHHHHC--HHHHHHHHHHHHHHHH
T ss_pred             hccccc--chhh------HHHHHHHHHHhccchhhhhhHHHHHHHHHh
Confidence            998754  2333      456677777444 77788888888888774

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=98.69  E-value=2.2e-07  Score=70.81  Aligned_cols=147  Identities=16%  Similarity=0.177  Sum_probs=119.4

Q ss_pred             hHHHHHHHHhc--CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhcc
Q 020640           31 DHFLSLLKKMS--ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSI  108 (323)
Q Consensus        31 ~~i~~Lv~~l~--~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~  108 (323)
                      +.++.||+...  .+.+.+.+.+-.|.|++. +|-|...+.+ ..+++.+++-|.      .+|..+.+.+...|+|++.
T Consensus        16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAY-DP~Nys~Lrq-l~vLdlFvdsl~------e~ne~LvefgIgglCNlC~   87 (173)
T KOG4646|consen   16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAY-DPINYSHLRQ-LDVLDLFVDSLE------EQNELLVEFGIGGLCNLCL   87 (173)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhhcc-CcchHHHHHH-hhHHHHHHHHhh------cccHHHHHHhHHHHHhhcc
Confidence            68899999995  668889999999999996 6888999999 999999999999      6789999999999999999


Q ss_pred             ccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC-CchhhhhccCChHHHHHHhhhcCHhHHHHHHHHH
Q 020640          109 HDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALD-SNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAI  186 (323)
Q Consensus       109 ~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL  186 (323)
                      +.-+.+.|.+.+| +|.++..+.++...+.-.++.++..|+... ..+..+....++..+.++-.+.+.+.+..|-.+|
T Consensus        88 d~~n~~~I~ea~g-~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~~~s~s~~~rnLa~~fl  165 (173)
T KOG4646|consen   88 DKTNAKFIREALG-LPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRWRESKSHDERNLASAFL  165 (173)
T ss_pred             ChHHHHHHHHhcC-CceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            9999999999887 899999999999999999999999998654 3466666654555554444333444444444433

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=98.69  E-value=1.2e-06  Score=79.75  Aligned_cols=262  Identities=13%  Similarity=0.092  Sum_probs=187.2

Q ss_pred             hhHHHHHHHHhc-CC--chhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHh
Q 020640           30 RDHFLSLLKKMS-AT--LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNL  106 (323)
Q Consensus        30 ~~~i~~Lv~~l~-~~--~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~l  106 (323)
                      .|.+..|++++. .+  ..+|+++...|..+..  .+|+..+.. .| +..++++-+.     .+.++.+...+.+|.++
T Consensus       179 ~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~-~~-~~~Il~lAK~-----~e~~e~aR~~~~il~~m  249 (832)
T KOG3678|consen  179 DGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVAR-IG-LGVILNLAKE-----REPVELARSVAGILEHM  249 (832)
T ss_pred             cchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhh-cc-chhhhhhhhh-----cCcHHHHHHHHHHHHHH
Confidence            467788999995 33  3468999999998874  567888887 55 6666666553     45789999999999999


Q ss_pred             ccccc-hhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC--CchhhhhccCChHHHHHHhhhcCHhHHHHHH
Q 020640          107 SIHDN-NKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALD--SNKEVIGKSGALKPLIDLLDEGHQSAMKDVA  183 (323)
Q Consensus       107 s~~~~-~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~--~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al  183 (323)
                      .++.+ .+..+++.+| +..++..++..++.+..+++.+|.|.+.+.  +.+..+++..+-+-|+.+..+.+.-.+.+|+
T Consensus       250 FKHSeet~~~Lvaa~~-lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AC  328 (832)
T KOG3678|consen  250 FKHSEETCQRLVAAGG-LDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHAC  328 (832)
T ss_pred             hhhhHHHHHHHHhhcc-cchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHH
Confidence            88777 5777777765 888888888889999999999999998654  5688889988888898888888888999999


Q ss_pred             HHHHHhccCCchhHHHHhhCch---HHHHHHhhcCchHHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHhccCChhHH
Q 020640          184 SAIFNLCITHENKARAVRDGGV---SVILKKIMDGVHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNK  260 (323)
Q Consensus       184 ~aL~~L~~~~~~~~~i~~~g~v---~~Lv~ll~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~  260 (323)
                      -+...|+.+.+....+-..|.+   ++++..++.+.....+       ....+++    ..+-++.|+.+|.+   .+..
T Consensus       329 lAV~vlat~KE~E~~VrkS~TlaLVEPlva~~DP~~FARD~-------hd~aQG~----~~d~LqRLvPlLdS---~R~E  394 (832)
T KOG3678|consen  329 LAVAVLATNKEVEREVRKSGTLALVEPLVASLDPGRFARDA-------HDYAQGR----GPDDLQRLVPLLDS---NRLE  394 (832)
T ss_pred             HHHhhhhhhhhhhHHHhhccchhhhhhhhhccCcchhhhhh-------hhhhccC----ChHHHHHhhhhhhc---chhh
Confidence            9999999888776666666544   4444444333222111       0001110    01237888888883   4444


Q ss_pred             HHHHHHHHHhcccC----hHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhcc
Q 020640          261 ENCIAILHTICLSD----RTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRT  316 (323)
Q Consensus       261 ~~a~~~L~~L~~~~----~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~  316 (323)
                      ..++++++-.+...    .++ -.++.+-|.|+.|-++..+.+....+.|..+|..+.+-
T Consensus       395 Aq~i~AF~l~~EAaIKs~Q~K-~kVFseIGAIQaLKevaSS~d~vaakfAseALtviGEE  453 (832)
T KOG3678|consen  395 AQCIGAFYLCAEAAIKSLQGK-TKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIGEE  453 (832)
T ss_pred             hhhhHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhccc
Confidence            44555544332211    111 23455679999999999988988899999999998763

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=98.67  E-value=1.5e-06  Score=82.14  Aligned_cols=142  Identities=10%  Similarity=0.088  Sum_probs=113.0

Q ss_pred             cCHhHHHHHHHHHHHhccCCc-hhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhc-CHHHHHHHHhcCCHHHHHH
Q 020640          174 GHQSAMKDVASAIFNLCITHE-NKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLST-NHRAVEEIGDLGGVSCMLR  249 (323)
Q Consensus       174 ~~~~~~~~al~aL~~L~~~~~-~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~-~~~~~~~i~~~g~i~~Lv~  249 (323)
                      .+..++.+|+-++.++++.-. -+...-+..+..+|++++.++  .+...++++++|+.. ...-|..|+..|+|+.+..
T Consensus       389 kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s  468 (678)
T KOG1293|consen  389 KDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILES  468 (678)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHH
Confidence            467778888888887765432 222233446888999999887  578889999999998 5899999999999999999


Q ss_pred             HHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhcc
Q 020640          250 IIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRT  316 (323)
Q Consensus       250 ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~  316 (323)
                      ++.+.+ ..++..+.++|+++.....+..+......=+...+..++.+.+..+++.+-.+|+||..-
T Consensus       469 ~~~~~~-~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~  534 (678)
T KOG1293|consen  469 MLTDPD-FNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCN  534 (678)
T ss_pred             HhcCCC-chHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcC
Confidence            999655 889999999999999988765444433334556677778888999999999999999864

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=98.63  E-value=3.4e-06  Score=79.73  Aligned_cols=217  Identities=17%  Similarity=0.130  Sum_probs=144.1

Q ss_pred             hhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHH---HHHHhcccc--chhhhhhccCCcHHHHHHHHhcCCHHH
Q 020640           63 SFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVIT---TLLNLSIHD--NNKKLVAETPMVIPLLMDALRSGTIET  137 (323)
Q Consensus        63 ~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~---~L~~ls~~~--~~~~~i~~~~g~i~~Lv~ll~~~~~~~  137 (323)
                      .++...++ ...++.+++++.....-.+.+++.+.-++.   .+..++...  ++++.+.+.. +...+.......+.+.
T Consensus       316 klq~~~~e-~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~-t~~~l~~~~~~kd~~~  393 (678)
T KOG1293|consen  316 KLQLPQHE-EATLKTTTELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETT-TESHLMCLPPIKDHDF  393 (678)
T ss_pred             hhhhHHhh-hhhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHH-HHHHHccccccccHHH
Confidence            34556666 677888888886421000222332222222   111222222  2344444432 2333333334557788


Q ss_pred             HHHHHHHHHHhcCCCC-chhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHHhccCC-chhHHHHhhCchHHHHHHhhcC
Q 020640          138 RSNAAAALFTLSALDS-NKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITH-ENKARAVRDGGVSVILKKIMDG  215 (323)
Q Consensus       138 ~~~a~~~L~~L~~~~~-~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~-~~~~~i~~~g~v~~Lv~ll~~~  215 (323)
                      ...++-.+.+++..-. -+..+-...+..+|++++..++..+...++++|.||.... +-+..+++.|+|..+..++.+.
T Consensus       394 ~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~  473 (678)
T KOG1293|consen  394 VAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDP  473 (678)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCC
Confidence            8888888888764322 2333555779999999999999999999999999998865 6788899999999999999876


Q ss_pred             --chHHHHHHHHHHHhcCHHH--HHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHH
Q 020640          216 --VHVDELLAILAMLSTNHRA--VEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMR  282 (323)
Q Consensus       216 --~~~~~a~~~L~~l~~~~~~--~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~  282 (323)
                        ..+..++|+|+++..+.+.  +.+....=..+.++.+..+. +..+|+.+...|.||+++..+...-++
T Consensus       474 ~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~-d~~Vqeq~fqllRNl~c~~~~svdfll  543 (678)
T KOG1293|consen  474 DFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDP-DWAVQEQCFQLLRNLTCNSRKSVDFLL  543 (678)
T ss_pred             CchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCC-CHHHHHHHHHHHHHhhcCcHHHHHHHH
Confidence              7899999999999996433  33333332356667777754 499999999999999998654443333

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=98.56  E-value=1.5e-05  Score=73.21  Aligned_cols=255  Identities=12%  Similarity=0.104  Sum_probs=180.0

Q ss_pred             HhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchhhhhhccCCcHHHHHHHHhcC--C
Q 020640           57 LTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSG--T  134 (323)
Q Consensus        57 l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~--~  134 (323)
                      +-+..+..+..+.- ....+.+..++-      +++.+++..+..+++.+..+.+.-..+.+.+ .--.++..|..+  +
T Consensus        10 l~~~~p~l~~~~~~-~~~~~~i~~~lL------~~~~~vraa~yRilRy~i~d~~~l~~~~~l~-id~~ii~SL~~~~~~   81 (371)
T PF14664_consen   10 LLKRHPTLKYDLVL-SFFGERIQCMLL------SDSKEVRAAGYRILRYLISDEESLQILLKLH-IDIFIIRSLDRDNKN   81 (371)
T ss_pred             HHHhCchhhhhhhH-HHHHHHHHHHHC------CCcHHHHHHHHHHHHHHHcCHHHHHHHHHcC-CchhhHhhhcccCCC
Confidence            33344444444443 334455554444      3458999999999999888888888888765 344566666543  5


Q ss_pred             HHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhc
Q 020640          135 IETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMD  214 (323)
Q Consensus       135 ~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~  214 (323)
                      ..-+++|.+.++.+....++... ...|++..++.+....++..+..|+.+|..++..++  ..+.+.||+..|++.+.+
T Consensus        82 ~~ER~QALkliR~~l~~~~~~~~-~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P--~lv~~~gG~~~L~~~l~d  158 (371)
T PF14664_consen   82 DVEREQALKLIRAFLEIKKGPKE-IPRGVVRALVAIAEHEDDRLRRICLETLCELALLNP--ELVAECGGIRVLLRALID  158 (371)
T ss_pred             hHHHHHHHHHHHHHHHhcCCccc-CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCH--HHHHHcCCHHHHHHHHHh
Confidence            66788999999998765443333 356789999999999999999999999999987654  445678999999999988


Q ss_pred             C--chHHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHhcc-----C-Ch--hHHHHHHHHHHHhcccChHhHHHHHhh
Q 020640          215 G--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRES-----T-CD--RNKENCIAILHTICLSDRTKWKAMREE  284 (323)
Q Consensus       215 ~--~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~~-----~-~~--~~~~~a~~~L~~L~~~~~~~~~~~~~~  284 (323)
                      +  ...+..+.++..+-..|..|+.+...--++.+..-+.+.     . +.  ..-..+..++..+-..=++...--..+
T Consensus       159 ~~~~~~~~l~~~lL~lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~  238 (371)
T PF14664_consen  159 GSFSISESLLDTLLYLLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMND  238 (371)
T ss_pred             ccHhHHHHHHHHHHHHhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCC
Confidence            6  677888999999999999999887533355565555433     1 12  234456666666655544432222223


Q ss_pred             cccHHHHHHHhhcCCHHHHHHHHHHHHHHhcchhhccC
Q 020640          285 ESTHGTISKLAQDGTARAKRKATGILERLKRTVNLTHT  322 (323)
Q Consensus       285 ~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~  322 (323)
                      ..++..|+..++.+++++++.-..++.-+-+..+..|+
T Consensus       239 ~~~lksLv~~L~~p~~~ir~~Ildll~dllrik~p~w~  276 (371)
T PF14664_consen  239 FRGLKSLVDSLRLPNPEIRKAILDLLFDLLRIKPPSWT  276 (371)
T ss_pred             chHHHHHHHHHcCCCHHHHHHHHHHHHHHHCCCCCCcc
Confidence            36889999999999999999988888888877666664

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=98.55  E-value=4.7e-07  Score=69.09  Aligned_cols=129  Identities=16%  Similarity=0.163  Sum_probs=109.4

Q ss_pred             HHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCc
Q 020640           75 IPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSN  154 (323)
Q Consensus        75 i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~  154 (323)
                      +..|++-..+     ..+.+.++..+.-|.|++.++.|...+.+.. ++...+..|..+++...+.+++.|+|+|.+..|
T Consensus        18 lq~LV~efq~-----tt~~eakeqv~ANLANFAYDP~Nys~Lrql~-vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n   91 (173)
T KOG4646|consen   18 LQHLVDEFQT-----TTNIEAKEQVTANLANFAYDPINYSHLRQLD-VLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTN   91 (173)
T ss_pred             HHHHHHHHHH-----hccHHHHHHHHHHHHhhccCcchHHHHHHhh-HHHHHHHHhhcccHHHHHHhHHHHHhhccChHH
Confidence            4445554443     5578999999999999999999999998875 899999999999999999999999999999999


Q ss_pred             hhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHHhccCC-chhHHHHhhCchHHHH
Q 020640          155 KEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITH-ENKARAVRDGGVSVIL  209 (323)
Q Consensus       155 ~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~-~~~~~i~~~g~v~~Lv  209 (323)
                      ++.|.+.++++..+..+.++...+...++.++..|+... ..+..+..-.++..+.
T Consensus        92 ~~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~  147 (173)
T KOG4646|consen   92 AKFIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQ  147 (173)
T ss_pred             HHHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHH
Confidence            999999999999999999999999999999999999876 4566665543343333

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.54  E-value=3.8e-05  Score=77.06  Aligned_cols=261  Identities=16%  Similarity=0.138  Sum_probs=169.2

Q ss_pred             chhHHHHHHHHHHHhccChhhHHHHhhhcC--CHHHHHHhhccccc------C---CCC-CHHHHHHHHHHHHHhccccc
Q 020640           44 LPDQTEAAKELRLLTKRMPSFRALFGESHD--AIPQLLSPLSESKC------E---NGI-NPNLQEDVITTLLNLSIHDN  111 (323)
Q Consensus        44 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g--~i~~Lv~lL~~~~~------~---~~~-~~~~~~~a~~~L~~ls~~~~  111 (323)
                      ..+|..|+..|..++..-+..++.... .|  .++.++.++.....      +   +.+ ...--..|.++|-.+|.+-.
T Consensus       263 ~~~R~~ALe~ivs~~e~Ap~~~k~~~~-~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~  341 (1075)
T KOG2171|consen  263 NSIRHLALEFLVSLSEYAPAMCKKLAL-LGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLG  341 (1075)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHhhhchh-hhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCC
Confidence            557888999999888765544443333 22  45555555543211      0   011 12345667777877776544


Q ss_pred             hhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhc-cCChHHHHHHhhhcCHhHHHHHHHHHHHhc
Q 020640          112 NKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGK-SGALKPLIDLLDEGHQSAMKDVASAIFNLC  190 (323)
Q Consensus       112 ~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~  190 (323)
                      .+..+-  . +.+.+-.++++.+..-+..++.+|..++..-. +..... ..+++..+..|.++++.++..|+.++..++
T Consensus       342 g~~v~p--~-~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~-~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~s  417 (1075)
T KOG2171|consen  342 GKQVLP--P-LFEALEAMLQSTEWKERHAALLALSVIAEGCS-DVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMS  417 (1075)
T ss_pred             hhhehH--H-HHHHHHHHhcCCCHHHHHHHHHHHHHHHcccH-HHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhh
Confidence            333222  1 46667788899999999999999998875322 122222 557888888899999999999999999998


Q ss_pred             cCC-chhHHHHhhCchHHHHHHhhcC---chHHHHHHHHHHHhcCHHHHHHHHh---cCCHHHHHHHHhccCChhHHHHH
Q 020640          191 ITH-ENKARAVRDGGVSVILKKIMDG---VHVDELLAILAMLSTNHRAVEEIGD---LGGVSCMLRIIRESTCDRNKENC  263 (323)
Q Consensus       191 ~~~-~~~~~i~~~g~v~~Lv~ll~~~---~~~~~a~~~L~~l~~~~~~~~~i~~---~g~i~~Lv~ll~~~~~~~~~~~a  263 (323)
                      .+- +.-..--.+-.++.|+..+.+.   .++..|+.+|-|.+...  -..+++   -+.+.+++.++..++.+.+++.+
T Consensus       418 tdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~--~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~v  495 (1075)
T KOG2171|consen  418 TDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEEC--DKSILEPYLDGLMEKKLLLLLQSSKPYVQEQA  495 (1075)
T ss_pred             hhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHHHHhcCCchhHHHHH
Confidence            765 3334444445677888888865   56777888888777631  111221   24566555566555559999999


Q ss_pred             HHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCC-HH---HHHHHHHHHHHH
Q 020640          264 IAILHTICLSDRTKWKAMREEESTHGTISKLAQDGT-AR---AKRKATGILERL  313 (323)
Q Consensus       264 ~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~-~~---~~~~A~~~L~~l  313 (323)
                      +.++...+.........-.  ...++.|.+++++.+ ++   .+-|....+..+
T Consensus       496 vtaIasvA~AA~~~F~pY~--d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli  547 (1075)
T KOG2171|consen  496 VTAIASVADAAQEKFIPYF--DRLMPLLKNFLQNADDKDLRELRGKTMECLSLI  547 (1075)
T ss_pred             HHHHHHHHHHHhhhhHhHH--HHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHH
Confidence            9999999887655444443  468899999998875 33   344444444443

>PF05536 Neurochondrin: Neurochondrin

Probab=98.51  E-value=1.5e-05  Score=76.81  Aligned_cols=240  Identities=13%  Similarity=0.098  Sum_probs=169.1

Q ss_pred             CHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccc----hhhhhhccCCcHHHHHHHHhc-------CCHHHHHHHH
Q 020640           74 AIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDN----NKKLVAETPMVIPLLMDALRS-------GTIETRSNAA  142 (323)
Q Consensus        74 ~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~----~~~~i~~~~g~i~~Lv~ll~~-------~~~~~~~~a~  142 (323)
                      .++..+.+|+      +.+.+-+-.++..+.++....+    .++.+.+.-| .+.+-++|++       +....+.-++
T Consensus         6 ~l~~c~~lL~------~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig-~~Fl~RLL~t~~~~~~~~~~~~~~Lav   78 (543)
T PF05536_consen    6 SLEKCLSLLK------SADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIG-FKFLDRLLRTGSVPSDCPPEEYLSLAV   78 (543)
T ss_pred             HHHHHHHHhc------cCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcC-hhHHHHHhcCCCCCCCCCHHHHHHHHH
Confidence            4677888888      5555667777777888876655    2445777666 7889999987       3466778899


Q ss_pred             HHHHHhcCCCCchhhhhccCChHHHHHHhhhcCH-hHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcC-chHHH
Q 020640          143 AALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQ-SAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG-VHVDE  220 (323)
Q Consensus       143 ~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~-~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~-~~~~~  220 (323)
                      .+|..++..++.+..---.+-||.|++.+...+. .+...|+.+|..++.+++++..+++.|+++.|.+.+.++ ...+.
T Consensus        79 svL~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~~~~~~E~  158 (543)
T PF05536_consen   79 SVLAAFCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPNQSFQMEI  158 (543)
T ss_pred             HHHHHHcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHhCcchHHH
Confidence            9999999866643222223469999999988766 999999999999999999999999999999999999876 67899


Q ss_pred             HHHHHHHHhcCHHHHHHHHhc----CCHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhc----ccHHHHH
Q 020640          221 LLAILAMLSTNHRAVEEIGDL----GGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEE----STHGTIS  292 (323)
Q Consensus       221 a~~~L~~l~~~~~~~~~i~~~----g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~----~~i~~L~  292 (323)
                      ++.++.+++........--..    .+++.+-..+...+ ...+...+..|..+-...+..........    .....|.
T Consensus       159 Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~-~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~  237 (543)
T PF05536_consen  159 ALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFH-GEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLR  237 (543)
T ss_pred             HHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHH
Confidence            999999988753211111111    23455555554333 56678888888888776631100111122    3444555


Q ss_pred             HHhhcC-CHHHHHHHHHHHHHHhcchhhcc
Q 020640          293 KLAQDG-TARAKRKATGILERLKRTVNLTH  321 (323)
Q Consensus       293 ~ll~~~-~~~~~~~A~~~L~~l~~~~~~~~  321 (323)
                      .++++. ++.-+..|..+...|.+.-...|
T Consensus       238 ~iL~sr~~~~~R~~al~Laa~Ll~~~G~~w  267 (543)
T PF05536_consen  238 DILQSRLTPSQRDPALNLAASLLDLLGPEW  267 (543)
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHHHhChHh
Confidence            566666 78888888888888877655554

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.46  E-value=5.9e-06  Score=71.67  Aligned_cols=233  Identities=15%  Similarity=0.180  Sum_probs=158.7

Q ss_pred             HHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCc
Q 020640           75 IPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSN  154 (323)
Q Consensus        75 i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~  154 (323)
                      ...++.+|.      +.+|.++..|+..+..++.. ..+...-.....++.+.++++...+  .+.|+.+|.|++.....
T Consensus         5 l~elv~ll~------~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l   75 (353)
T KOG2973|consen    5 LVELVELLH------SLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEEL   75 (353)
T ss_pred             HHHHHHHhc------cCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHH
Confidence            346788888      77899999999999988766 2222222223346667777776655  77899999999999888


Q ss_pred             hhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHHhccCCchhHHHHhh------CchHHHHHHhhcC--c---hHHHHHH
Q 020640          155 KEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRD------GGVSVILKKIMDG--V---HVDELLA  223 (323)
Q Consensus       155 ~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~i~~~------g~v~~Lv~ll~~~--~---~~~~a~~  223 (323)
                      ++.+.+. .+..+++.+.++....-...+.+|.||+..++....+...      .++..++....+.  .   .-...+-
T Consensus        76 ~~~ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~  154 (353)
T KOG2973|consen   76 RKKLLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAP  154 (353)
T ss_pred             HHHHHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHH
Confidence            8888887 7888888888876778888999999999998766655321      3444455444433  2   2355678


Q ss_pred             HHHHHhcCHHHHHHHHhcCC--HHHHHHHHhccCChhH-HHHHHHHHHHhcccChHhHHHHHh-hcccHHHHH-------
Q 020640          224 ILAMLSTNHRAVEEIGDLGG--VSCMLRIIRESTCDRN-KENCIAILHTICLSDRTKWKAMRE-EESTHGTIS-------  292 (323)
Q Consensus       224 ~L~~l~~~~~~~~~i~~~g~--i~~Lv~ll~~~~~~~~-~~~a~~~L~~L~~~~~~~~~~~~~-~~~~i~~L~-------  292 (323)
                      +++||+..+.+|..+.+...  ++.++.+-. .+ ..+ +...+++|.|+|.+.+.+ ..++. +....+.|+       
T Consensus       155 vf~nls~~~~gR~l~~~~k~~p~~kll~ft~-~~-s~vRr~GvagtlkN~cFd~~~h-~~lL~e~~~lLp~iLlPlagpe  231 (353)
T KOG2973|consen  155 VFANLSQFEAGRKLLLEPKRFPDQKLLPFTS-ED-SQVRRGGVAGTLKNCCFDAKLH-EVLLDESINLLPAILLPLAGPE  231 (353)
T ss_pred             HHHHHhhhhhhhhHhcchhhhhHhhhhcccc-cc-hhhhccchHHHHHhhhccchhH-HHHhcchHHHHHHHHhhcCCcc
Confidence            89999999999999987663  333333333 23 444 556999999998887643 23332 112222221       


Q ss_pred             --------------HHh-----hcCCHHHHHHHHHHHHHHhcchhhc
Q 020640          293 --------------KLA-----QDGTARAKRKATGILERLKRTVNLT  320 (323)
Q Consensus       293 --------------~ll-----~~~~~~~~~~A~~~L~~l~~~~~~~  320 (323)
                                    +.+     ...++.+++.-..+|-.||.....+
T Consensus       232 e~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~GR  278 (353)
T KOG2973|consen  232 ELSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRAGR  278 (353)
T ss_pred             ccCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhHhH
Confidence                          112     1236888888888888888766554

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.46  E-value=6.3e-05  Score=75.55  Aligned_cols=258  Identities=15%  Similarity=0.158  Sum_probs=179.7

Q ss_pred             HHHHHHHHh-cCCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccc-
Q 020640           32 HFLSLLKKM-SATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIH-  109 (323)
Q Consensus        32 ~i~~Lv~~l-~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~-  109 (323)
                      .+..|+..| +.|-++|.+|-..+.+.....           ...+.|..++.+     +.+++++..|+-.++.+... 
T Consensus         5 ~l~qLl~~l~spDn~vr~~Ae~~l~~~~~~~-----------~~l~~L~~i~~~-----~~~p~~Rq~aaVl~Rkl~~~~   68 (1075)
T KOG2171|consen    5 PLEQLLQQLLSPDNEVRRQAEEALETLAKTE-----------PLLPALAHILAT-----SADPQVRQLAAVLLRKLLTKH   68 (1075)
T ss_pred             HHHHHHHHhcCCCchHHHHHHHHHHHhhccc-----------chHHHHHHHHhc-----CCChHHHHHHHHHHHHHHHHH
Confidence            455666666 566778999999998888642           267888888886     67899999999999887532 


Q ss_pred             -----cchhhhhhccCCcHHHHHHHHhc-CCHHHHHHHHHHHHHhcCCCCchhhhhc-cCChHHHHHHhhhcCHhHHHHH
Q 020640          110 -----DNNKKLVAETPMVIPLLMDALRS-GTIETRSNAAAALFTLSALDSNKEVIGK-SGALKPLIDLLDEGHQSAMKDV  182 (323)
Q Consensus       110 -----~~~~~~i~~~~g~i~~Lv~ll~~-~~~~~~~~a~~~L~~L~~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~a  182 (323)
                           .+.+..|-      ..|+..+.+ ..+.++...+.++..++.+.-..    + .+.++.|++..+++++..++.|
T Consensus        69 w~~l~~e~~~sik------s~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e----~WPell~~L~q~~~S~~~~~rE~a  138 (1075)
T KOG2171|consen   69 WSRLSAEVQQSIK------SSLLEIIQSETEPSVRHKLADVIAEIARNDLPE----KWPELLQFLFQSTKSPNPSLRESA  138 (1075)
T ss_pred             hhcCCHHHHHHHH------HHHHHHHHhccchHHHHHHHHHHHHHHHhcccc----chHHHHHHHHHHhcCCCcchhHHH
Confidence                 22333332      234445444 46788888999999998654222    3 5677777777888999999999


Q ss_pred             HHHHHHhccCCchhHH-HHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcCH-HHHHHHHhc-CCHHHHHHHHhc----
Q 020640          183 ASAIFNLCITHENKAR-AVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNH-RAVEEIGDL-GGVSCMLRIIRE----  253 (323)
Q Consensus       183 l~aL~~L~~~~~~~~~-i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~~-~~~~~i~~~-g~i~~Lv~ll~~----  253 (323)
                      +..|+.+...-.+... .+.. ..+.+.+-|.++  .++..+++++..++..- .++...-.. ..+|.++..+..    
T Consensus       139 l~il~s~~~~~~~~~~~~~~~-l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~  217 (1075)
T KOG2171|consen  139 LLILSSLPETFGNTLQPHLDD-LLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQD  217 (1075)
T ss_pred             HHHHHhhhhhhccccchhHHH-HHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhc
Confidence            9999999765544332 1111 333444444444  57888999988888753 233333222 456766666654    


Q ss_pred             cCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcC--CHHHHHHHHHHHHHHhcchhh
Q 020640          254 STCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDG--TARAKRKATGILERLKRTVNL  319 (323)
Q Consensus       254 ~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~~~~~A~~~L~~l~~~~~~  319 (323)
                      ++ ++.-..+..+|-.+....+...+..+.  .+++.-.++..+.  ++.++..|...|-.+.++++.
T Consensus       218 ~d-~~~a~~~l~~l~El~e~~pk~l~~~l~--~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~  282 (1075)
T KOG2171|consen  218 GD-DDAAKSALEALIELLESEPKLLRPHLS--QIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPA  282 (1075)
T ss_pred             cc-hHHHHHHHHHHHHHHhhchHHHHHHHH--HHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHH
Confidence            33 556678889999999988877777764  5777778887776  799999999999999888654

>PF05536 Neurochondrin: Neurochondrin

Probab=98.40  E-value=6.3e-05  Score=72.62  Aligned_cols=238  Identities=14%  Similarity=0.086  Sum_probs=166.0

Q ss_pred             hHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhh---HHHHhhhcCCHHHHHHhhcccccCC-CCCHHHHHHHHHHHHH
Q 020640           31 DHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSF---RALFGESHDAIPQLLSPLSESKCEN-GINPNLQEDVITTLLN  105 (323)
Q Consensus        31 ~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~---~~~i~~~~g~i~~Lv~lL~~~~~~~-~~~~~~~~~a~~~L~~  105 (323)
                      ..+...+++|+ .+...|-.++..+.++.+.++..   ++.+.+ +=+..-|-++|+++.... .+....+.-|+.+|..
T Consensus         5 ~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~-aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~   83 (543)
T PF05536_consen    5 ASLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFE-AIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAA   83 (543)
T ss_pred             HHHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHH-hcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHH
Confidence            47888999996 44456778999999999876643   345777 667888889998754311 1346788889999999


Q ss_pred             hccccch--hhhhhccCCcHHHHHHHHhcCCH-HHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHH
Q 020640          106 LSIHDNN--KKLVAETPMVIPLLMDALRSGTI-ETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDV  182 (323)
Q Consensus       106 ls~~~~~--~~~i~~~~g~i~~Lv~ll~~~~~-~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a  182 (323)
                      ++.+++.  -..++.   .+|.|++++...+. .+...+..+|..++.+++.+..+.+.|+++.|++.+.+ .+.....+
T Consensus        84 f~~~~~~a~~~~~~~---~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~A  159 (543)
T PF05536_consen   84 FCRDPELASSPQMVS---RIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIA  159 (543)
T ss_pred             HcCChhhhcCHHHHH---HHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHH
Confidence            9987773  455654   49999999988776 99999999999999999999999999999999999988 55678889


Q ss_pred             HHHHHHhccCCchhHHHHhh----CchHHHHHHhhcC--chHHHHHHHHHHHhcCHHH--HHHH----HhcCCHHHHHHH
Q 020640          183 ASAIFNLCITHENKARAVRD----GGVSVILKKIMDG--VHVDELLAILAMLSTNHRA--VEEI----GDLGGVSCMLRI  250 (323)
Q Consensus       183 l~aL~~L~~~~~~~~~i~~~----g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~~~~--~~~i----~~~g~i~~Lv~l  250 (323)
                      +.+|.+++...+....--..    ..++.+-..+...  ..+...+..|.++-...+.  ....    +-..+...|..+
T Consensus       160 l~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~i  239 (543)
T PF05536_consen  160 LNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDI  239 (543)
T ss_pred             HHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHH
Confidence            99998886654421110111    2334444444432  5677778888877664321  1111    112245556667


Q ss_pred             HhccCChhHHHHHHHHHHHhccc
Q 020640          251 IRESTCDRNKENCIAILHTICLS  273 (323)
Q Consensus       251 l~~~~~~~~~~~a~~~L~~L~~~  273 (323)
                      +++...+..+..+..+...|...
T Consensus       240 L~sr~~~~~R~~al~Laa~Ll~~  262 (543)
T PF05536_consen  240 LQSRLTPSQRDPALNLAASLLDL  262 (543)
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHH
Confidence            76554466666776666666554

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.33  E-value=1.6e-05  Score=75.40  Aligned_cols=279  Identities=13%  Similarity=0.071  Sum_probs=183.3

Q ss_pred             hHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHH-Hhh--hcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHh
Q 020640           31 DHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRAL-FGE--SHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNL  106 (323)
Q Consensus        31 ~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~-i~~--~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~l  106 (323)
                      ..+|.|.++|. .+..+++-|..+|.+++.++.+.-.. +.+  ..-.+|.++++.+      ++++.++..|+..+..+
T Consensus       128 elLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~------h~spkiRs~A~~cvNq~  201 (885)
T KOG2023|consen  128 ELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFK------HPSPKIRSHAVGCVNQF  201 (885)
T ss_pred             hHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHh------CCChhHHHHHHhhhhhe
Confidence            57888999995 56778899999999999876643222 111  0125788888888      67899999999887654


Q ss_pred             ccccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHH
Q 020640          107 SIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAI  186 (323)
Q Consensus       107 s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL  186 (323)
                      -. ..++..+...+.+++.+..+-.++++++++..|.++..|......+-.=.-.++++.++..-++.+..+...|+...
T Consensus       202 i~-~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFw  280 (885)
T KOG2023|consen  202 II-IQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFW  280 (885)
T ss_pred             ee-cCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHH
Confidence            32 22344444444467777777778899999999999999975443322222256788888888888889999999999


Q ss_pred             HHhccCCchhHHHHhh--CchHHHHHHhhcC---------------------ch-------HHHHHH-------------
Q 020640          187 FNLCITHENKARAVRD--GGVSVILKKIMDG---------------------VH-------VDELLA-------------  223 (323)
Q Consensus       187 ~~L~~~~~~~~~i~~~--g~v~~Lv~ll~~~---------------------~~-------~~~a~~-------------  223 (323)
                      ..++..+-.+..+...  ..+|.|++-|.-.                     ++       +....+             
T Consensus       281 la~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~  360 (885)
T KOG2023|consen  281 LALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDED  360 (885)
T ss_pred             HHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccccccc
Confidence            9999888555444432  5666666533200                     00       000000             


Q ss_pred             ------HHHHHhcCH----HHHHHHHhcCCHHHHHHHHhc--cC-ChhHHHHHHHHHHHhcccChHhHHHHHhh-cccHH
Q 020640          224 ------ILAMLSTNH----RAVEEIGDLGGVSCMLRIIRE--ST-CDRNKENCIAILHTICLSDRTKWKAMREE-ESTHG  289 (323)
Q Consensus       224 ------~L~~l~~~~----~~~~~i~~~g~i~~Lv~ll~~--~~-~~~~~~~a~~~L~~L~~~~~~~~~~~~~~-~~~i~  289 (323)
                            .=+||=++.    +.-.-+.....++.+..+++.  ++ .=.+|+.++.+|..++.+-   ..-++.. ...++
T Consensus       361 DDdD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGc---M~g~~p~LpeLip  437 (885)
T KOG2023|consen  361 DDDDAFSDWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGC---MQGFVPHLPELIP  437 (885)
T ss_pred             ccccccccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHH---hhhcccchHHHHH
Confidence                  112332222    222224444566777777764  22 2346888888888887643   2233211 24788


Q ss_pred             HHHHHhhcCCHHHHHHHHHHHHHHhcchhh
Q 020640          290 TISKLAQDGTARAKRKATGILERLKRTVNL  319 (323)
Q Consensus       290 ~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~  319 (323)
                      .|+.++.+..+-++.-++|.|...+.+...
T Consensus       438 ~l~~~L~DKkplVRsITCWTLsRys~wv~~  467 (885)
T KOG2023|consen  438 FLLSLLDDKKPLVRSITCWTLSRYSKWVVQ  467 (885)
T ss_pred             HHHHHhccCccceeeeeeeeHhhhhhhHhc
Confidence            889999999999999999999998876543

>PTZ00429 beta-adaptin; Provisional

Probab=98.31  E-value=0.00047  Score=68.73  Aligned_cols=208  Identities=13%  Similarity=0.095  Sum_probs=137.6

Q ss_pred             CCCHHHHHHHHHHHHHhccccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHH
Q 020640           90 GINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLID  169 (323)
Q Consensus        90 ~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~  169 (323)
                      ++|+.++-.|+.+|.++-.     ..+.+.  +++.+.+.+.+.++.+++.|+-++..+-..+.  ..+.+.|.++.|.+
T Consensus       116 d~Np~IRaLALRtLs~Ir~-----~~i~e~--l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p--elv~~~~~~~~L~~  186 (746)
T PTZ00429        116 NSSPVVRALAVRTMMCIRV-----SSVLEY--TLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM--QLFYQQDFKKDLVE  186 (746)
T ss_pred             CCCHHHHHHHHHHHHcCCc-----HHHHHH--HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc--ccccccchHHHHHH
Confidence            6678888888887776632     223332  45567778888999999999999999865333  23345778899999


Q ss_pred             HhhhcCHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcCc--hHHHHHHHHHHHhcCHHHHHHHHhcCCHHHH
Q 020640          170 LLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDGV--HVDELLAILAMLSTNHRAVEEIGDLGGVSCM  247 (323)
Q Consensus       170 lL~~~~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~~--~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L  247 (323)
                      +|.+.++.+..+|+.+|..+...++....+ ..+.+..|+..+.+-+  .+...+.+|...  .|+.....  ...+..+
T Consensus       187 LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l-~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y--~P~~~~e~--~~il~~l  261 (746)
T PTZ00429        187 LLNDNNPVVASNAAAIVCEVNDYGSEKIES-SNEWVNRLVYHLPECNEWGQLYILELLAAQ--RPSDKESA--ETLLTRV  261 (746)
T ss_pred             HhcCCCccHHHHHHHHHHHHHHhCchhhHH-HHHHHHHHHHHhhcCChHHHHHHHHHHHhc--CCCCcHHH--HHHHHHH
Confidence            999999999999999999998765433222 2345666777665432  234444444332  12222211  2456777


Q ss_pred             HHHHhccCChhHHHHHHHHHHHhcccC-hHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 020640          248 LRIIRESTCDRNKENCIAILHTICLSD-RTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKR  315 (323)
Q Consensus       248 v~ll~~~~~~~~~~~a~~~L~~L~~~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~  315 (323)
                      ...+++. ++-+...|++++.++.... +...+....  ....+|+.+ .+++++++.-+..-+..+..
T Consensus       262 ~~~Lq~~-N~AVVl~Aik~il~l~~~~~~~~~~~~~~--rl~~pLv~L-~ss~~eiqyvaLr~I~~i~~  326 (746)
T PTZ00429        262 LPRMSHQ-NPAVVMGAIKVVANLASRCSQELIERCTV--RVNTALLTL-SRRDAETQYIVCKNIHALLV  326 (746)
T ss_pred             HHHhcCC-CHHHHHHHHHHHHHhcCcCCHHHHHHHHH--HHHHHHHHh-hCCCccHHHHHHHHHHHHHH
Confidence            7778865 4889999999999988653 232333321  344666766 45678888888777766654

>PTZ00429 beta-adaptin; Provisional

Probab=98.30  E-value=0.00039  Score=69.26  Aligned_cols=253  Identities=11%  Similarity=0.065  Sum_probs=172.6

Q ss_pred             hhHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhcc
Q 020640           30 RDHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSI  108 (323)
Q Consensus        30 ~~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~  108 (323)
                      .|-+..|-+.|. .+...+.+|++.+........+.-.       ..+.+++++.      +++.+++.-..-.+.+.+.
T Consensus        31 kge~~ELr~~L~s~~~~~kk~alKkvIa~mt~G~DvS~-------LF~dVvk~~~------S~d~elKKLvYLYL~~ya~   97 (746)
T PTZ00429         31 RGEGAELQNDLNGTDSYRKKAAVKRIIANMTMGRDVSY-------LFVDVVKLAP------STDLELKKLVYLYVLSTAR   97 (746)
T ss_pred             cchHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCchH-------HHHHHHHHhC------CCCHHHHHHHHHHHHHHcc
Confidence            456677777885 4556677777755554434444433       3444677777      7788999888888888876


Q ss_pred             ccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHH
Q 020640          109 HDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFN  188 (323)
Q Consensus       109 ~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~  188 (323)
                      .+.....+     ++..+.+-+.++++.++..|++++.++-..     .+.+ -.++.+.+.+.+.++-+++.|+-++..
T Consensus        98 ~~pelalL-----aINtl~KDl~d~Np~IRaLALRtLs~Ir~~-----~i~e-~l~~~lkk~L~D~~pYVRKtAalai~K  166 (746)
T PTZ00429         98 LQPEKALL-----AVNTFLQDTTNSSPVVRALAVRTMMCIRVS-----SVLE-YTLEPLRRAVADPDPYVRKTAAMGLGK  166 (746)
T ss_pred             cChHHHHH-----HHHHHHHHcCCCCHHHHHHHHHHHHcCCcH-----HHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence            44332222     244566777888999999999999887441     1222 246667777888899999999999999


Q ss_pred             hccCCchhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHH
Q 020640          189 LCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAI  266 (323)
Q Consensus       189 L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~  266 (323)
                      +-..++.  .+.+.|.++.|.++|.+.  .+..+|+.+|..+......+ .-...+.+..|+..+.+.+ +..|...+.+
T Consensus       167 ly~~~pe--lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~-l~l~~~~~~~Ll~~L~e~~-EW~Qi~IL~l  242 (746)
T PTZ00429        167 LFHDDMQ--LFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEK-IESSNEWVNRLVYHLPECN-EWGQLYILEL  242 (746)
T ss_pred             HHhhCcc--cccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchh-hHHHHHHHHHHHHHhhcCC-hHHHHHHHHH
Confidence            8654442  234557888999999876  67899999999998642221 2233455777888887544 7778877777


Q ss_pred             HHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhcc
Q 020640          267 LHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRT  316 (323)
Q Consensus       267 L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~  316 (323)
                      |....-.+.   .+.   ..++..+...+++.++.+.-.|++++-.+..+
T Consensus       243 L~~y~P~~~---~e~---~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~  286 (746)
T PTZ00429        243 LAAQRPSDK---ESA---ETLLTRVLPRMSHQNPAVVMGAIKVVANLASR  286 (746)
T ss_pred             HHhcCCCCc---HHH---HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCc
Confidence            755322221   122   25777888888888999988888888877643

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=98.21  E-value=0.00066  Score=62.46  Aligned_cols=275  Identities=13%  Similarity=0.102  Sum_probs=171.6

Q ss_pred             HHHHHHHHh-cCCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhcccc
Q 020640           32 HFLSLLKKM-SATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHD  110 (323)
Q Consensus        32 ~i~~Lv~~l-~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~  110 (323)
                      ..+.+..++ .++.++|-.+.+.++.+.. +++.-..+.+ .+.=--++.-|...    ..+..-++.|++.++.+....
T Consensus        26 ~~~~i~~~lL~~~~~vraa~yRilRy~i~-d~~~l~~~~~-l~id~~ii~SL~~~----~~~~~ER~QALkliR~~l~~~   99 (371)
T PF14664_consen   26 FGERIQCMLLSDSKEVRAAGYRILRYLIS-DEESLQILLK-LHIDIFIIRSLDRD----NKNDVEREQALKLIRAFLEIK   99 (371)
T ss_pred             HHHHHHHHHCCCcHHHHHHHHHHHHHHHc-CHHHHHHHHH-cCCchhhHhhhccc----CCChHHHHHHHHHHHHHHHhc
Confidence            334444344 5668889999999999995 5667777777 66444455556533    345667899999998876554


Q ss_pred             chhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHHhc
Q 020640          111 NNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLC  190 (323)
Q Consensus       111 ~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~  190 (323)
                      .....+-  .|++..++.+..+.++..+..|..+|..++..+  -..+..+||+..|++.+.++..+.....+.++-.+-
T Consensus       100 ~~~~~~~--~~vvralvaiae~~~D~lr~~cletL~El~l~~--P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lL  175 (371)
T PF14664_consen  100 KGPKEIP--RGVVRALVAIAEHEDDRLRRICLETLCELALLN--PELVAECGGIRVLLRALIDGSFSISESLLDTLLYLL  175 (371)
T ss_pred             CCcccCC--HHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhC--HHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHh
Confidence            4444443  358999999999999999999999999998643  234567999999999998877678888888888888


Q ss_pred             cCCchhHHHHhhCchHHHHHHhhcC--------c-h--HHHHHHHHHHHhcCHHHHHHHHhc--CCHHHHHHHHhccCCh
Q 020640          191 ITHENKARAVRDGGVSVILKKIMDG--------V-H--VDELLAILAMLSTNHRAVEEIGDL--GGVSCMLRIIRESTCD  257 (323)
Q Consensus       191 ~~~~~~~~i~~~g~v~~Lv~ll~~~--------~-~--~~~a~~~L~~l~~~~~~~~~i~~~--g~i~~Lv~ll~~~~~~  257 (323)
                      ..+..|..+...--++.++.-+.+.        . .  -..+..++..+-..=.+--.+...  .+++.|+..|.... +
T Consensus       176 d~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~-~  254 (371)
T PF14664_consen  176 DSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPN-P  254 (371)
T ss_pred             CCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCC-H
Confidence            7777776554322233333333221        1 1  112222222222211111111111  23444444444322 4


Q ss_pred             hHHHHHHHHHHHh------------------------------c---------------------ccChHhHHHHHhhcc
Q 020640          258 RNKENCIAILHTI------------------------------C---------------------LSDRTKWKAMREEES  286 (323)
Q Consensus       258 ~~~~~a~~~L~~L------------------------------~---------------------~~~~~~~~~~~~~~~  286 (323)
                      +++.....++..+                              .                     .+.-...-.++.+.|
T Consensus       255 ~ir~~Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~y~aLll~ili~~g  334 (371)
T PF14664_consen  255 EIRKAILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNHYLALLLAILIEAG  334 (371)
T ss_pred             HHHHHHHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccHHHHHHHHHHHHHHHcC
Confidence            4444444444433                              1                     000011112344899


Q ss_pred             cHHHHHHHhhcC-CHHHHHHHHHHHHHHhcch
Q 020640          287 THGTISKLAQDG-TARAKRKATGILERLKRTV  317 (323)
Q Consensus       287 ~i~~L~~ll~~~-~~~~~~~A~~~L~~l~~~~  317 (323)
                      .++.|++++.+. ++.+..||.-+|..+...+
T Consensus       335 L~~~L~~li~~~~d~~l~~KAtlLL~elL~la  366 (371)
T PF14664_consen  335 LLEALVELIESSEDSSLSRKATLLLGELLHLA  366 (371)
T ss_pred             hHHHHHHHHhcCCCchHHHHHHHHHHHHHHHH
Confidence            999999999888 8999999999998876543

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=98.20  E-value=3.2e-06  Score=51.71  Aligned_cols=41  Identities=12%  Similarity=0.284  Sum_probs=37.2

Q ss_pred             CHHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHhcc
Q 020640          231 NHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICL  272 (323)
Q Consensus       231 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~  272 (323)
                      +++++..+++.|+++.|+++|++++ +.+++.|+++|+||+.
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~~~~-~~v~~~a~~al~nl~~   41 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLKSPD-PEVQEEAAWALGNLAA   41 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTTSSS-HHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHcccHHHHHHHHcCCC-HHHHHHHHHHHHHHhC
Confidence            4788999999999999999999654 9999999999999974

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=98.18  E-value=0.00034  Score=66.16  Aligned_cols=232  Identities=18%  Similarity=0.148  Sum_probs=157.4

Q ss_pred             CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccc-cchhhhhhccC
Q 020640           42 ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIH-DNNKKLVAETP  120 (323)
Q Consensus        42 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~-~~~~~~i~~~~  120 (323)
                      .+..+..+|+++|.|....++..|..+.+ .|..+.+++.|+.+..- +.+.++.-....+|+-++.. .+.+..+.+..
T Consensus        44 ~~~~v~~EALKCL~N~lf~s~~aR~~~~~-~~~~~~l~~~Lk~~~~~-~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~  121 (446)
T PF10165_consen   44 PDPDVSREALKCLCNALFLSPSARQIFVD-LGLAEKLCERLKNYSDS-SQPSDVEFLDSRLLFLLTALRPDDRKKLIEEH  121 (446)
T ss_pred             CChHHHHHHHHHHHHHHhCCHHHHHHHHH-cCcHHHHHHHHHccccc-CCChhHHHHHHHHHHHHhcCChhHHHHHHHHh
Confidence            34778999999999999999999999999 99999999999864210 12677888888888877654 44677777765


Q ss_pred             CcHHHHHHHHhc-----------------CCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhh---------c
Q 020640          121 MVIPLLMDALRS-----------------GTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDE---------G  174 (323)
Q Consensus       121 g~i~~Lv~ll~~-----------------~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~---------~  174 (323)
                      +.+..++..+..                 ........++++++|+..+......--....++.|+.++..         +
T Consensus       122 ~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~  201 (446)
T PF10165_consen  122 HGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPP  201 (446)
T ss_pred             hhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCc
Confidence            457777766521                 13455778899999997654433221224456666665442         1


Q ss_pred             CHhHHHHHHHHHHHhccCCchh--------HH----HHhhCchHHHHHHhhcC----------chHHHHHHHHHHHhcC-
Q 020640          175 HQSAMKDVASAIFNLCITHENK--------AR----AVRDGGVSVILKKIMDG----------VHVDELLAILAMLSTN-  231 (323)
Q Consensus       175 ~~~~~~~al~aL~~L~~~~~~~--------~~----i~~~g~v~~Lv~ll~~~----------~~~~~a~~~L~~l~~~-  231 (323)
                      ......+++.+|.|+-......        ..    -.....+..|+.+|...          +.....+.+|.+++.. 
T Consensus       202 l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~  281 (446)
T PF10165_consen  202 LDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAA  281 (446)
T ss_pred             chhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhc
Confidence            3457888999998883221111        00    01224566777777632          2234457777777775 


Q ss_pred             HHHHHHHHh--------------c--CCHHHHHHHHhccCChhHHHHHHHHHHHhcccChH
Q 020640          232 HRAVEEIGD--------------L--GGVSCMLRIIRESTCDRNKENCIAILHTICLSDRT  276 (323)
Q Consensus       232 ~~~~~~i~~--------------~--g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~  276 (323)
                      ...|+.+..              .  ..-..|++++.... ..++..++..|+.||..+.+
T Consensus       282 ~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~-~~~k~~vaellf~Lc~~d~~  341 (446)
T PF10165_consen  282 REVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPD-PQLKDAVAELLFVLCKEDAS  341 (446)
T ss_pred             HHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCC-chHHHHHHHHHHHHHhhhHH
Confidence            555555543              1  25788999999665 88999999999999998765

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.17  E-value=0.00039  Score=60.59  Aligned_cols=237  Identities=14%  Similarity=0.161  Sum_probs=157.7

Q ss_pred             hhhhHHHHHHHHhcCCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhc
Q 020640           28 ADRDHFLSLLKKMSATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLS  107 (323)
Q Consensus        28 ~~~~~i~~Lv~~l~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls  107 (323)
                      +....++.+..++.+... -..|+.+|.|++. ++..++.+.+ . .+..++..+.      ++....-...+.+|.|++
T Consensus        41 ~~~~~lk~l~qL~~~~~~-~~~a~~alVnlsq-~~~l~~~ll~-~-~~k~l~~~~~------~p~~~lad~~cmlL~NLs  110 (353)
T KOG2973|consen   41 YSEALLKDLTQLLKDLDP-AEPAATALVNLSQ-KEELRKKLLQ-D-LLKVLMDMLT------DPQSPLADLICMLLSNLS  110 (353)
T ss_pred             chhhhHHHHHHHccCccc-ccHHHHHHHHHHh-hHHHHHHHHH-H-HHHHHHHHhc------CcccchHHHHHHHHHHhc
Confidence            344566777777764323 5689999999995 6778888888 5 7777777776      444567788899999999


Q ss_pred             cccchhhhhhc------cCCcHHHHHHHHhcC-C-HHHHHHHHHHHHHhcCCCCchhhhhccCCh--HHHHHHhhhcCHh
Q 020640          108 IHDNNKKLVAE------TPMVIPLLMDALRSG-T-IETRSNAAAALFTLSALDSNKEVIGKSGAL--KPLIDLLDEGHQS  177 (323)
Q Consensus       108 ~~~~~~~~i~~------~~g~i~~Lv~ll~~~-~-~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i--~~Lv~lL~~~~~~  177 (323)
                      ..++....+..      ..|........+..+ + ..-....+-++.||+.....|..+.....+  +.|+.+- +.+..
T Consensus       111 ~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nls~~~~gR~l~~~~k~~p~~kll~ft-~~~s~  189 (353)
T KOG2973|consen  111 RDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANLSQFEAGRKLLLEPKRFPDQKLLPFT-SEDSQ  189 (353)
T ss_pred             cCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHHhhhhhhhhHhcchhhhhHhhhhccc-ccchh
Confidence            98874433322      134444444444433 2 233456788999999999888888774422  2233332 33333


Q ss_pred             H-HHHHHHHHHHhccCCchhHHHHhhCchHHHHHHh------------------------hc-------CchHHHHHHHH
Q 020640          178 A-MKDVASAIFNLCITHENKARAVRDGGVSVILKKI------------------------MD-------GVHVDELLAIL  225 (323)
Q Consensus       178 ~-~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll------------------------~~-------~~~~~~a~~~L  225 (323)
                      + +...+++|.|.|++......++.. .+..|..+|                        ..       +.++..-+.+|
T Consensus       190 vRr~GvagtlkN~cFd~~~h~~lL~e-~~~lLp~iLlPlagpee~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai  268 (353)
T KOG2973|consen  190 VRRGGVAGTLKNCCFDAKLHEVLLDE-SINLLPAILLPLAGPEELSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEAL  268 (353)
T ss_pred             hhccchHHHHHhhhccchhHHHHhcc-hHHHHHHHHhhcCCccccCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHH
Confidence            4 456889999999988887777652 333333332                        11       14577789999


Q ss_pred             HHHhcCHHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHhcccChH
Q 020640          226 AMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRT  276 (323)
Q Consensus       226 ~~l~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~  276 (323)
                      .-||....+|+.+++.|+-+.+-.+=+...+++..+.+-.....+...+++
T Consensus       269 ~lLcaT~~GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq~Lv~~e~~  319 (353)
T KOG2973|consen  269 LLLCATRAGREVLRSKGVYPILRELHKWEEDEDIREACEQVVQMLVRLEPE  319 (353)
T ss_pred             HHHHhhhHhHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHHHHhcccc
Confidence            999999999999999886555444444334477788777777777776653

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=98.16  E-value=0.00068  Score=61.50  Aligned_cols=259  Identities=15%  Similarity=0.091  Sum_probs=177.8

Q ss_pred             HHHHHHHHHHHhccChh-hHHHHhhhc--CCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchhhhhhcc----
Q 020640           47 QTEAAKELRLLTKRMPS-FRALFGESH--DAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAET----  119 (323)
Q Consensus        47 ~~~a~~~L~~l~~~~~~-~~~~i~~~~--g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~----  119 (323)
                      ...-...++++...... -|..+....  ..+..++++++.     ...++.....+..+.-+-..+..+..++..    
T Consensus        36 se~d~~~i~~~~~~~~~~~r~~~l~~~~~~~v~~fi~LlS~-----~~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~  110 (442)
T KOG2759|consen   36 SEEDYQFIRRLEKAPLSKERAQVLSANNAQYVKTFINLLSH-----IDKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHK  110 (442)
T ss_pred             hHhhHHHHHHHhcccchhhhhHHhhcccHHHHHHHHHHhch-----hhhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHh
Confidence            44455566666543221 233344312  246777888874     334666777777777665555555544431    


Q ss_pred             --CCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCC-hHHHHHHhhh-cCHhHHHHHHHHHHHhccCCch
Q 020640          120 --PMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGA-LKPLIDLLDE-GHQSAMKDVASAIFNLCITHEN  195 (323)
Q Consensus       120 --~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~-i~~Lv~lL~~-~~~~~~~~al~aL~~L~~~~~~  195 (323)
                        .-..+..++++...+.-+...+.+++..++.+...+....+... ...|-+.+.+ .+.....-+.++|..+...++-
T Consensus       111 ~k~~~~~~fl~ll~r~d~~iv~~~~~Ils~la~~g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~ey  190 (442)
T KOG2759|consen  111 LKRTEWLSFLNLLNRQDTFIVEMSFRILSKLACFGNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEY  190 (442)
T ss_pred             hhccchHHHHHHHhcCChHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcch
Confidence              11245578888888888888899999999877765555444222 2333444555 5677888899999999999999


Q ss_pred             hHHHHhhCchHHHHHHhhcC----chHHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHhc
Q 020640          196 KARAVRDGGVSVILKKIMDG----VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTIC  271 (323)
Q Consensus       196 ~~~i~~~g~v~~Lv~ll~~~----~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~  271 (323)
                      |..++.+.++..++..+.+.    .++-..+-+++-|+.+|...+.+..-+.|+.|.++++++...++.+-++.++.|+.
T Consensus       191 R~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll  270 (442)
T KOG2759|consen  191 RYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLL  270 (442)
T ss_pred             hheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999998432    57888999999999999998888777899999999997655888999999999999


Q ss_pred             ccCh------HhHHHHHhhcccHHHHHHHhhcC--CHHHHHHHHHHHH
Q 020640          272 LSDR------TKWKAMREEESTHGTISKLAQDG--TARAKRKATGILE  311 (323)
Q Consensus       272 ~~~~------~~~~~~~~~~~~i~~L~~ll~~~--~~~~~~~A~~~L~  311 (323)
                      ...+      .....++ ..++.+.+-.+....  +++...--..+-+
T Consensus       271 ~k~~~~~~~k~~~~~mv-~~~v~k~l~~L~~rkysDEDL~~di~~L~e  317 (442)
T KOG2759|consen  271 DKGPDRETKKDIASQMV-LCKVLKTLQSLEERKYSDEDLVDDIEFLTE  317 (442)
T ss_pred             ccCchhhHHHHHHHHHH-hcCchHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence            8874      2223344 456666666555544  4444444333333

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=98.09  E-value=8.2e-05  Score=69.18  Aligned_cols=195  Identities=14%  Similarity=0.114  Sum_probs=146.5

Q ss_pred             HHHHHHhccccc-hhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhc-CCCCchhhhhccCChHHHHHHhhhcCHh
Q 020640          100 ITTLLNLSIHDN-NKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLS-ALDSNKEVIGKSGALKPLIDLLDEGHQS  177 (323)
Q Consensus       100 ~~~L~~ls~~~~-~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~-~~~~~~~~i~~~g~i~~Lv~lL~~~~~~  177 (323)
                      +..|..++..-. -|..+...+ +.+.|+.+|..++..+...+...+.|+. .+.+.+..+.+.|++..|++++.+.+..
T Consensus       410 ~l~LkS~SrSV~~LRTgL~d~~-I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDda  488 (743)
T COG5369         410 VLFLKSMSRSVTFLRTGLLDYP-IVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDA  488 (743)
T ss_pred             HHHHHHhhHHHHHHHhhccccc-hHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhh
Confidence            334556655444 366666665 7899999999987777778888888886 5566688889999999999999998889


Q ss_pred             HHHHHHHHHHHhccCCc--hhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcC----HHHHHHHHhcC----CHH
Q 020640          178 AMKDVASAIFNLCITHE--NKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTN----HRAVEEIGDLG----GVS  245 (323)
Q Consensus       178 ~~~~al~aL~~L~~~~~--~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~----~~~~~~i~~~g----~i~  245 (323)
                      .+.+..|.|+.+-.+.+  .+.+.+..-++..++.+..++  .++.+++.+|+|+..+    ++.++.+.+..    ...
T Consensus       489 Lqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk  568 (743)
T COG5369         489 LQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFK  568 (743)
T ss_pred             hhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHH
Confidence            99999999999988775  355667777899999999988  8999999999999884    23344444332    355


Q ss_pred             HHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhh
Q 020640          246 CMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQ  296 (323)
Q Consensus       246 ~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~  296 (323)
                      .|++.++..+ |...+..+-+|.+++..+++...-++.+...+....+++.
T Consensus       569 ~l~~k~e~~n-p~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~  618 (743)
T COG5369         569 RLIDKYEENN-PMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILD  618 (743)
T ss_pred             HHHHHHHhcC-chhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHH
Confidence            6677777544 6666777888888888776655556666666666666654

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.08  E-value=0.00049  Score=68.67  Aligned_cols=251  Identities=12%  Similarity=0.077  Sum_probs=177.3

Q ss_pred             HHHHHHcCCCCCCCCCCCCccccchhhhhHHHHHHHHhcCCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhh
Q 020640            3 SQWCRSQGIELPNSVQYINEEGITEADRDHFLSLLKKMSATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPL   82 (323)
Q Consensus         3 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Lv~~l~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL   82 (323)
                      |=||+.+..+..-|.|      .+    -+++.|+++.     -|..|+..|.++-.-.+=-...-.. .|+.|.++++|
T Consensus       458 evWLd~gse~r~PPeQ------LP----iVLQVLLSQv-----HRlRAL~LL~RFLDlGpWAV~LaLs-VGIFPYVLKLL  521 (1387)
T KOG1517|consen  458 EVWLDYGSESRTPPEQ------LP----IVLQVLLSQV-----HRLRALVLLARFLDLGPWAVDLALS-VGIFPYVLKLL  521 (1387)
T ss_pred             HHHHHhccccCCChHh------cc----hHHHHHHHHH-----HHHHHHHHHHHHhccchhhhhhhhc-cchHHHHHHHh
Confidence            5688877766544444      11    3777887764     5788999998888655533334456 89999999999


Q ss_pred             cccccCCCCCHHHHHHHHHHHH-HhccccchhhhhhccCCcHHHHHHHHhc-C--CHHHHHHHHHHHHHhcC-CCCchhh
Q 020640           83 SESKCENGINPNLQEDVITTLL-NLSIHDNNKKLVAETPMVIPLLMDALRS-G--TIETRSNAAAALFTLSA-LDSNKEV  157 (323)
Q Consensus        83 ~~~~~~~~~~~~~~~~a~~~L~-~ls~~~~~~~~i~~~~g~i~~Lv~ll~~-~--~~~~~~~a~~~L~~L~~-~~~~~~~  157 (323)
                      +      +...+++..-+-+=. .||.++.++..+++..| ....+..|.. .  +++-+..++-+|..+.. +.-.++.
T Consensus       522 Q------S~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g-~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~a  594 (1387)
T KOG1517|consen  522 Q------SSARELRPILVFIWAKILAVDPSCQADLVKENG-YKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKA  594 (1387)
T ss_pred             c------cchHhhhhhHHHHHHHHHhcCchhHHHHHhccC-ceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHH
Confidence            9      556676665444332 46778888999998876 6667777765 2  56888888999988874 3445666


Q ss_pred             hhccCChHHHHHHhhhc-CHhHHHHHHHHHHHhccCC-chhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcC--
Q 020640          158 IGKSGALKPLIDLLDEG-HQSAMKDVASAIFNLCITH-ENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTN--  231 (323)
Q Consensus       158 i~~~g~i~~Lv~lL~~~-~~~~~~~al~aL~~L~~~~-~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~--  231 (323)
                      ..+.+.+..-++.|.++ .+-++.-++-+|..|=.+. +.|..=.+.++.+.|+.+|+++  +++..|+-+|..+-.+  
T Consensus       595 cl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~  674 (1387)
T KOG1517|consen  595 CLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGS  674 (1387)
T ss_pred             hccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccc
Confidence            77788888888888885 5677888888888885554 4555557789999999999987  7888888888877663  


Q ss_pred             ---HHHHHHH-----------HhcCCH----HHHHHHHhccCChhHHHHHHHHHHHhcccChHh
Q 020640          232 ---HRAVEEI-----------GDLGGV----SCMLRIIRESTCDRNKENCIAILHTICLSDRTK  277 (323)
Q Consensus       232 ---~~~~~~i-----------~~~g~i----~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~  277 (323)
                         ++....+           .-+..+    ..++..+++++ +-++...+-+|..+.......
T Consensus       675 d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgs-plvr~ev~v~ls~~~~g~~~~  737 (1387)
T KOG1517|consen  675 DNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGS-PLVRTEVVVALSHFVVGYVSH  737 (1387)
T ss_pred             cccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccc-hHHHHHHHHHHHHHHHhhHHH
Confidence               2211111           112222    36777777665 888888888999888877553

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=98.04  E-value=0.00024  Score=65.25  Aligned_cols=179  Identities=13%  Similarity=0.149  Sum_probs=139.1

Q ss_pred             hHHHHhhhcCCHHHHHHhhcccccCCCCCH--HHHHHHHHHHHHhccccchhhhhhccCCcHHHHHHHHhc-CCHHHHHH
Q 020640           64 FRALFGESHDAIPQLLSPLSESKCENGINP--NLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRS-GTIETRSN  140 (323)
Q Consensus        64 ~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~--~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~-~~~~~~~~  140 (323)
                      .+..+.. .|+++.|++++.      +++-  .++..+..+|..+. ..+|+..++..+  ...++.+.+. +.++....
T Consensus       172 LCD~iR~-~~~lD~Llrmf~------aPn~et~vRve~~rlLEq~~-~aeN~d~va~~~--~~~Il~lAK~~e~~e~aR~  241 (832)
T KOG3678|consen  172 LCDAIRL-DGGLDLLLRMFQ------APNLETSVRVEAARLLEQIL-VAENRDRVARIG--LGVILNLAKEREPVELARS  241 (832)
T ss_pred             hhhHhhc-cchHHHHHHHHh------CCchhHHHHHHHHHHHHHHH-hhhhhhHHhhcc--chhhhhhhhhcCcHHHHHH
Confidence            3455677 899999999998      4443  46888999888764 446777777764  5566666654 47788999


Q ss_pred             HHHHHHHhcCCC-CchhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHHhccCC--chhHHHHhhCchHHHHHHhhcC--
Q 020640          141 AAAALFTLSALD-SNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITH--ENKARAVRDGGVSVILKKIMDG--  215 (323)
Q Consensus       141 a~~~L~~L~~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~--~~~~~i~~~g~v~~Lv~ll~~~--  215 (323)
                      .+++|.++-.+. +.+..+++.|++...+-.++..++.+..+|+-+|.|.+.+.  +.+.+|++..+-+-|..+-.+.  
T Consensus       242 ~~~il~~mFKHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDe  321 (832)
T KOG3678|consen  242 VAGILEHMFKHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDE  321 (832)
T ss_pred             HHHHHHHHhhhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHH
Confidence            999999998665 45888999999999999999999999999999999998866  5777888887777777765544  


Q ss_pred             chHHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHh
Q 020640          216 VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIR  252 (323)
Q Consensus       216 ~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~  252 (323)
                      -++-.||-+.+-++.+.+....+.+.|.+..+-.++.
T Consensus       322 l~R~~AClAV~vlat~KE~E~~VrkS~TlaLVEPlva  358 (832)
T KOG3678|consen  322 LLRLHACLAVAVLATNKEVEREVRKSGTLALVEPLVA  358 (832)
T ss_pred             HHHHHHHHHHhhhhhhhhhhHHHhhccchhhhhhhhh
Confidence            4688899999999999888888888875443333333

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=98.02  E-value=0.00069  Score=59.39  Aligned_cols=223  Identities=12%  Similarity=0.087  Sum_probs=159.9

Q ss_pred             CHHHHHHHHHHHHHhccccchhhhhhccCCcHHHHHHHHhcC--CHHHHHHHHHHHHHhcCCCCchhhhhc-cCChHHHH
Q 020640           92 NPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSG--TIETRSNAAAALFTLSALDSNKEVIGK-SGALKPLI  168 (323)
Q Consensus        92 ~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~--~~~~~~~a~~~L~~L~~~~~~~~~i~~-~g~i~~Lv  168 (323)
                      ++-.+-.|++.+.++....+.|..+.....+...++.+++..  ..+.+.+..-+++-|+..+.....+-. ...+..|+
T Consensus       162 ~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli~dli  241 (432)
T COG5231         162 DFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDLINDLI  241 (432)
T ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence            455788899999999999998887776555778899998864  678999999999999987776644433 55678888


Q ss_pred             HHhhhc-CHhHHHHHHHHHHHhccCC--chhHHHHhhCchHHHHHHhhcC-----ch-------HHHH------H----H
Q 020640          169 DLLDEG-HQSAMKDVASAIFNLCITH--ENKARAVRDGGVSVILKKIMDG-----VH-------VDEL------L----A  223 (323)
Q Consensus       169 ~lL~~~-~~~~~~~al~aL~~L~~~~--~~~~~i~~~g~v~~Lv~ll~~~-----~~-------~~~a------~----~  223 (323)
                      ++.++. ...+.+.+++.+.|++.-.  +....+.-.|-+.+-++.|.++     ++       ++..      +    .
T Consensus       242 ~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~fD~  321 (432)
T COG5231         242 AIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIFDN  321 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence            888875 5678889999999998722  3333445556566667766543     11       1111      0    1


Q ss_pred             HHHHHhc-----C---------HHHHHHHHhc--CCHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhccc
Q 020640          224 ILAMLST-----N---------HRAVEEIGDL--GGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEEST  287 (323)
Q Consensus       224 ~L~~l~~-----~---------~~~~~~i~~~--g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~  287 (323)
                      .+..|=+     .         .++.+.+.+.  .++..|.++++.........-||.=+..+....|+ ...++...|+
T Consensus       322 Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE-~~~vl~Kyg~  400 (432)
T COG5231         322 YLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPE-INAVLSKYGV  400 (432)
T ss_pred             HHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCch-HHHHHHHhhh
Confidence            1122211     1         2455555554  36899999999654233566678888888888877 4577778999


Q ss_pred             HHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 020640          288 HGTISKLAQDGTARAKRKATGILERLKR  315 (323)
Q Consensus       288 i~~L~~ll~~~~~~~~~~A~~~L~~l~~  315 (323)
                      -+.+.+++.+++++++-.|..++..+-.
T Consensus       401 k~~im~L~nh~d~~VkfeAl~a~q~~i~  428 (432)
T COG5231         401 KEIIMNLINHDDDDVKFEALQALQTCIS  428 (432)
T ss_pred             HHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence            9999999999999999999999987754

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.00  E-value=0.00059  Score=63.98  Aligned_cols=272  Identities=13%  Similarity=0.119  Sum_probs=176.8

Q ss_pred             hHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccc
Q 020640           31 DHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIH  109 (323)
Q Consensus        31 ~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~  109 (323)
                      +.||.|-+.+. -++.+|.-.+.-|..+-. .|. .+.+.=-....+-|+++|.      +++.+++..+=.+|.++-..
T Consensus       167 ~~ipLL~eriy~~n~~tR~flv~Wl~~Lds-~P~-~~m~~yl~~~ldGLf~~Ls------D~s~eVr~~~~t~l~~fL~e  238 (675)
T KOG0212|consen  167 EFIPLLRERIYVINPMTRQFLVSWLYVLDS-VPD-LEMISYLPSLLDGLFNMLS------DSSDEVRTLTDTLLSEFLAE  238 (675)
T ss_pred             HHHHHHHHHHhcCCchHHHHHHHHHHHHhc-CCc-HHHHhcchHHHHHHHHHhc------CCcHHHHHHHHHHHHHHHHH
Confidence            34444444443 457777777776666664 343 3333321345666778887      67788886666666555332


Q ss_pred             cchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHh-HHHHHH---HH
Q 020640          110 DNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQS-AMKDVA---SA  185 (323)
Q Consensus       110 ~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~-~~~~al---~a  185 (323)
                      -.+....+..+..++.++.-+.++++.++..|..-+..+..-........-.|++..++.++.+.... ++..+.   ..
T Consensus       239 I~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~  318 (675)
T KOG0212|consen  239 IRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGL  318 (675)
T ss_pred             HhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHH
Confidence            22333333445567888999999999999999888877765444444444478888888888876543 333322   23


Q ss_pred             HHHhccCCchhHHHHhh-CchHHHHHHhhcC--chHHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHhccCChhHHHH
Q 020640          186 IFNLCITHENKARAVRD-GGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKEN  262 (323)
Q Consensus       186 L~~L~~~~~~~~~i~~~-g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~  262 (323)
                      |..++........ ++. ..+..+-+.+.+.  +.+..++.-+..+-..-.++-........+.|+.-+.+.+ +.+...
T Consensus       319 l~~l~s~~~~~~~-id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~s-d~vvl~  396 (675)
T KOG0212|consen  319 LLKLVSSERLKEE-IDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRS-DEVVLL  396 (675)
T ss_pred             HHHHHhhhhhccc-cchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCch-hHHHHH
Confidence            4444444333333 333 3556777777766  5566677666666554445555555678899999998655 999999


Q ss_pred             HHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhcch
Q 020640          263 CIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTV  317 (323)
Q Consensus       263 a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~  317 (323)
                      +...+.++|.++.. . ..   -.+...|+++-..+..-.+.++..+++.||-.=
T Consensus       397 ~L~lla~i~~s~~~-~-~~---~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~lL  446 (675)
T KOG0212|consen  397 ALSLLASICSSSNS-P-NL---RKFLLSLLEMFKEDTKLLEVRGNLIIRQLCLLL  446 (675)
T ss_pred             HHHHHHHHhcCccc-c-cH---HHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHh
Confidence            99999999998754 1 11   246677888878788888999999999998643

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=98.00  E-value=1.1e-05  Score=49.30  Aligned_cols=40  Identities=30%  Similarity=0.410  Sum_probs=37.1

Q ss_pred             ChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhc
Q 020640           61 MPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLS  107 (323)
Q Consensus        61 ~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls  107 (323)
                      +++++..+.+ .|++|.|+++|+      ++++++++.|+++|.||+
T Consensus         1 ~~~~~~~i~~-~g~i~~Lv~ll~------~~~~~v~~~a~~al~nl~   40 (41)
T PF00514_consen    1 SPENKQAIVE-AGGIPPLVQLLK------SPDPEVQEEAAWALGNLA   40 (41)
T ss_dssp             SHHHHHHHHH-TTHHHHHHHHTT------SSSHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHH-cccHHHHHHHHc------CCCHHHHHHHHHHHHHHh
Confidence            4678899999 999999999999      789999999999999997

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.99  E-value=0.0044  Score=56.70  Aligned_cols=256  Identities=19%  Similarity=0.232  Sum_probs=176.6

Q ss_pred             HHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccc------hh----hhhhc
Q 020640           49 EAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDN------NK----KLVAE  118 (323)
Q Consensus        49 ~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~------~~----~~i~~  118 (323)
                      ..+..+.-++ ..|+....+++ .++++.|+.+|.      ++|..+....+..|..|...+.      ..    ..+++
T Consensus       103 d~IQ~mhvlA-t~PdLYp~lve-ln~V~slL~LLg------HeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvd  174 (536)
T KOG2734|consen  103 DIIQEMHVLA-TMPDLYPILVE-LNAVQSLLELLG------HENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVD  174 (536)
T ss_pred             HHHHHHHhhh-cChHHHHHHHH-hccHHHHHHHhc------CCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHh
Confidence            3677777777 57888889999 999999999999      7788999999999999975431      11    23444


Q ss_pred             cCCcHHHHHHHHhcCC------HHHHHHHHHHHHHhcCCC-CchhhhhccCChHHHHHHhhhc--CHhHHHHHHHHHHHh
Q 020640          119 TPMVIPLLMDALRSGT------IETRSNAAAALFTLSALD-SNKEVIGKSGALKPLIDLLDEG--HQSAMKDVASAIFNL  189 (323)
Q Consensus       119 ~~g~i~~Lv~ll~~~~------~~~~~~a~~~L~~L~~~~-~~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~al~aL~~L  189 (323)
                       |++++.|++-+..=+      ..........+-|+.... +....+++.|.+.-|++-+...  -..-..+|...|.-+
T Consensus       175 -g~vlaLLvqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLail  253 (536)
T KOG2734|consen  175 -GQVLALLVQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAIL  253 (536)
T ss_pred             -ccHHHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHH
Confidence             668888888775432      234455677778886544 4566777777777666644432  334567788888777


Q ss_pred             ccCC-chhHHHHhhCchHHHHHHhh-----cC------chHHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHhccCCh
Q 020640          190 CITH-ENKARAVRDGGVSVILKKIM-----DG------VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCD  257 (323)
Q Consensus       190 ~~~~-~~~~~i~~~g~v~~Lv~ll~-----~~------~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~  257 (323)
                      -.+. +++.......++..+++-+.     ++      ..-++-...|+.+-..+.+|..|+...+++...-+++. . .
T Consensus       254 lq~s~e~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~-K-k  331 (536)
T KOG2734|consen  254 LQNSDENRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE-K-K  331 (536)
T ss_pred             hccCchhhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH-H-H
Confidence            6655 47777777788888888664     22      23455566666666779999999998888887777875 3 6


Q ss_pred             hHHHHHHHHHHHhcccCh--HhHHHHHhhcccHHHHHHH-hhc---------CCHHHHHHHHHHHHHHhcc
Q 020640          258 RNKENCIAILHTICLSDR--TKWKAMREEESTHGTISKL-AQD---------GTARAKRKATGILERLKRT  316 (323)
Q Consensus       258 ~~~~~a~~~L~~L~~~~~--~~~~~~~~~~~~i~~L~~l-l~~---------~~~~~~~~A~~~L~~l~~~  316 (323)
                      ..+..+.++|-....+.+  ..+..++ +..+...+..+ .+.         .-++..+.-..+|+.+.++
T Consensus       332 ~sr~SalkvLd~am~g~~gt~~C~kfV-e~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~~  401 (536)
T KOG2734|consen  332 VSRGSALKVLDHAMFGPEGTPNCNKFV-EILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLRN  401 (536)
T ss_pred             HhhhhHHHHHHHHHhCCCchHHHHHHH-HHHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHHh
Confidence            678889999999888776  4455555 35555555443 321         1345555666666666553

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.98  E-value=0.0039  Score=60.22  Aligned_cols=217  Identities=14%  Similarity=0.197  Sum_probs=133.5

Q ss_pred             hhhhhHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHH
Q 020640           27 EADRDHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLN  105 (323)
Q Consensus        27 ~~~~~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~  105 (323)
                      +..++.-+-++.+|+ +-+.+|.+|+..+..+...-++   .+.   -+.|.|++-|.      ++|+.++..|+.+++.
T Consensus       140 dLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPe---Alr---~~FprL~EkLe------DpDp~V~SAAV~VICE  207 (877)
T KOG1059|consen  140 DLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPE---ALR---PCFPRLVEKLE------DPDPSVVSAAVSVICE  207 (877)
T ss_pred             hhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhH---hHh---hhHHHHHHhcc------CCCchHHHHHHHHHHH
Confidence            344567778888996 5588999999999999976443   333   36888999999      8899999999999999


Q ss_pred             hccccc-hhhhhhccCCcHHHHHHHHhc-CCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcC-HhHHHHH
Q 020640          106 LSIHDN-NKKLVAETPMVIPLLMDALRS-GTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGH-QSAMKDV  182 (323)
Q Consensus       106 ls~~~~-~~~~i~~~~g~i~~Lv~ll~~-~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~-~~~~~~a  182 (323)
                      ||..+. +.-.      .-|.+..++.. .+.=.....++...+|+..++   .++. ..+++|.+++.+.. .++...|
T Consensus       208 LArKnPknyL~------LAP~ffkllttSsNNWmLIKiiKLF~aLtplEP---RLgK-KLieplt~li~sT~AmSLlYEC  277 (877)
T KOG1059|consen  208 LARKNPQNYLQ------LAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEP---RLGK-KLIEPITELMESTVAMSLLYEC  277 (877)
T ss_pred             HHhhCCccccc------ccHHHHHHHhccCCCeehHHHHHHHhhccccCc---hhhh-hhhhHHHHHHHhhHHHHHHHHH
Confidence            997655 4332      24566677754 344455566777777765443   2222 37888999888763 3455556


Q ss_pred             HHHHH--HhccCCchhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhc-CHHHHHHHHhcCCHHHHHHHHhccCCh
Q 020640          183 ASAIF--NLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLST-NHRAVEEIGDLGGVSCMLRIIRESTCD  257 (323)
Q Consensus       183 l~aL~--~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~  257 (323)
                      .+++-  +++.+..+...-+.. +++.|=.++.+.  +++.-++-++..+.. ++....+.-     +.+++.|.+.+ .
T Consensus       278 vNTVVa~s~s~g~~d~~asiqL-CvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~k-----dlIlrcL~DkD-~  350 (877)
T KOG1059|consen  278 VNTVVAVSMSSGMSDHSASIQL-CVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAHK-----DLILRCLDDKD-E  350 (877)
T ss_pred             HHHheeehhccCCCCcHHHHHH-HHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHhH-----HHHHHHhccCC-c
Confidence            65553  333332233333322 455555555544  566666666666665 333222211     23344444332 5


Q ss_pred             hHHHHHHHHHHHhcc
Q 020640          258 RNKENCIAILHTICL  272 (323)
Q Consensus       258 ~~~~~a~~~L~~L~~  272 (323)
                      .++..|+..|.-+..
T Consensus       351 SIRlrALdLl~gmVs  365 (877)
T KOG1059|consen  351 SIRLRALDLLYGMVS  365 (877)
T ss_pred             hhHHHHHHHHHHHhh
Confidence            555556555555544

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.97  E-value=0.0031  Score=60.93  Aligned_cols=266  Identities=15%  Similarity=0.154  Sum_probs=165.7

Q ss_pred             hhhhHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHh
Q 020640           28 ADRDHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNL  106 (323)
Q Consensus        28 ~~~~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~l  106 (323)
                      +-...+|+|++.|. .|+.++-.|+..++.+++.+|.+.      ...-|.+..+|.+.     .|-=+..+.+....+|
T Consensus       178 Alr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPkny------L~LAP~ffkllttS-----sNNWmLIKiiKLF~aL  246 (877)
T KOG1059|consen  178 ALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNY------LQLAPLFYKLLVTS-----SNNWVLIKLLKLFAAL  246 (877)
T ss_pred             hHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCccc------ccccHHHHHHHhcc-----CCCeehHHHHHHHhhc
Confidence            34457889999996 679999999999999999999875      44567788999763     3444566777878888


Q ss_pred             ccccchhhhhhccCCcHHHHHHHHhcCC-HHHHHHHHHHHHHh--cCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHH
Q 020640          107 SIHDNNKKLVAETPMVIPLLMDALRSGT-IETRSNAAAALFTL--SALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVA  183 (323)
Q Consensus       107 s~~~~~~~~i~~~~g~i~~Lv~ll~~~~-~~~~~~a~~~L~~L--~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al  183 (323)
                      +--+   ..++++  +++.|.+++.+.+ ..+...|+.++...  +...++...-+.. +++.|-.++.+.|+..+..++
T Consensus       247 tplE---PRLgKK--Lieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asiqL-CvqKLr~fiedsDqNLKYlgL  320 (877)
T KOG1059|consen  247 TPLE---PRLGKK--LIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASIQL-CVQKLRIFIEDSDQNLKYLGL  320 (877)
T ss_pred             cccC---chhhhh--hhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHHHH-HHHHHhhhhhcCCccHHHHHH
Confidence            7543   344543  5788888888764 34555555555433  3222233332322 578888888899999999999


Q ss_pred             HHHHHhccCCchhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHhccCChhHHH
Q 020640          184 SAIFNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKE  261 (323)
Q Consensus       184 ~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~  261 (323)
                      .+++-+...+.-.   +.+ --..+++.|.+.  .++-.|+..|.-|.. +++-.+|+     +.|+..+...+....+.
T Consensus       321 lam~KI~ktHp~~---Vqa-~kdlIlrcL~DkD~SIRlrALdLl~gmVs-kkNl~eIV-----k~LM~~~~~ae~t~yrd  390 (877)
T KOG1059|consen  321 LAMSKILKTHPKA---VQA-HKDLILRCLDDKDESIRLRALDLLYGMVS-KKNLMEIV-----KTLMKHVEKAEGTNYRD  390 (877)
T ss_pred             HHHHHHhhhCHHH---HHH-hHHHHHHHhccCCchhHHHHHHHHHHHhh-hhhHHHHH-----HHHHHHHHhccchhHHH
Confidence            9999887654322   111 234678888765  689999998888776 44444443     45665544333234455


Q ss_pred             HHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcC-CHHHHHHHHHHHHHHhcchhhccC
Q 020640          262 NCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDG-TARAKRKATGILERLKRTVNLTHT  322 (323)
Q Consensus       262 ~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~~A~~~L~~l~~~~~~~~~  322 (323)
                      .-+.-+-.+|+.+  .+..+....=.+..|+++..-. ...-..-|..++-..-+...++|+
T Consensus       391 ell~~II~iCS~s--nY~~ItdFEWYlsVlveLa~l~~~~~G~~I~eQi~Dv~iRV~~iR~f  450 (877)
T KOG1059|consen  391 ELLTRIISICSQS--NYQYITDFEWYLSVLVELARLEGTRHGSLIAEQIIDVAIRVPSIRPF  450 (877)
T ss_pred             HHHHHHHHHhhhh--hhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHheechhhhHh
Confidence            5555555555544  2445544444566677765433 222233333333333344444443

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.92  E-value=0.0003  Score=67.05  Aligned_cols=264  Identities=11%  Similarity=0.075  Sum_probs=169.3

Q ss_pred             hHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccc
Q 020640           31 DHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIH  109 (323)
Q Consensus        31 ~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~  109 (323)
                      -.+|+++++.+ .++.+|..|+.++-.+.-...  +..+......++.+..+-.      +++++++...+.++..|...
T Consensus       174 ~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~--qal~~~iD~Fle~lFalan------D~~~eVRk~vC~alv~Llev  245 (885)
T KOG2023|consen  174 IMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQT--QALYVHIDKFLEILFALAN------DEDPEVRKNVCRALVFLLEV  245 (885)
T ss_pred             HhHHHHHHHHhCCChhHHHHHHhhhhheeecCc--HHHHHHHHHHHHHHHHHcc------CCCHHHHHHHHHHHHHHHHh
Confidence            47888888886 678999999999988876433  3333331234555555544      88999999999999877543


Q ss_pred             cchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhc--cCChHHHHHHhhh-c-C----------
Q 020640          110 DNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGK--SGALKPLIDLLDE-G-H----------  175 (323)
Q Consensus       110 ~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~--~g~i~~Lv~lL~~-~-~----------  175 (323)
                      ...+- +-..+++++.++..-+..++.+.-.|+.....++..+-.+..+..  ...+|.|++-+.- + +          
T Consensus       246 r~dkl-~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD  324 (885)
T KOG2023|consen  246 RPDKL-VPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEED  324 (885)
T ss_pred             cHHhc-ccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCcccc
Confidence            33222 222345777777777888999999999999999988866666655  4566666643320 0 0          


Q ss_pred             --------------------------------------------HhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHH
Q 020640          176 --------------------------------------------QSAMKDVASAIFNLCITHENKARAVRDGGVSVILKK  211 (323)
Q Consensus       176 --------------------------------------------~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~l  211 (323)
                                                                  -..++-.+.+|--|       ..+.....++.++.+
T Consensus       325 ~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVL-------anvf~~elL~~l~Pl  397 (885)
T KOG2023|consen  325 ESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVL-------ANVFGDELLPILLPL  397 (885)
T ss_pred             ccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHH-------HHhhHHHHHHHHHHH
Confidence                                                        01111111111111       112223455556666


Q ss_pred             hhc----C--chHHHHHHHHHHHhcCHHHHHHHHhc--CCHHHHHHHHhccCChhHHHHHHHHHHHhcccChH-hHHHHH
Q 020640          212 IMD----G--VHVDELLAILAMLSTNHRAVEEIGDL--GGVSCMLRIIRESTCDRNKENCIAILHTICLSDRT-KWKAMR  282 (323)
Q Consensus       212 l~~----~--~~~~~a~~~L~~l~~~~~~~~~i~~~--g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~-~~~~~~  282 (323)
                      |+.    .  .+++.++-+|..++.+-  -+-++..  -.++.|+.+|.+.. +-++.-.||+|...+..-.. ...+.+
T Consensus       398 Lk~~L~~~~W~vrEagvLAlGAIAEGc--M~g~~p~LpeLip~l~~~L~DKk-plVRsITCWTLsRys~wv~~~~~~~~f  474 (885)
T KOG2023|consen  398 LKEHLSSEEWKVREAGVLALGAIAEGC--MQGFVPHLPELIPFLLSLLDDKK-PLVRSITCWTLSRYSKWVVQDSRDEYF  474 (885)
T ss_pred             HHHHcCcchhhhhhhhHHHHHHHHHHH--hhhcccchHHHHHHHHHHhccCc-cceeeeeeeeHhhhhhhHhcCChHhhh
Confidence            553    3  57888888888887631  1123332  25788888888654 88999999999887553211 122333


Q ss_pred             hhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 020640          283 EEESTHGTISKLAQDGTARAKRKATGILERLKR  315 (323)
Q Consensus       283 ~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~  315 (323)
                        ...+..|++.+-+++.++|+.|+.+...+-+
T Consensus       475 --~pvL~~ll~~llD~NK~VQEAAcsAfAtleE  505 (885)
T KOG2023|consen  475 --KPVLEGLLRRLLDSNKKVQEAACSAFATLEE  505 (885)
T ss_pred             --HHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence              2466777777888999999999999887764

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=97.92  E-value=0.0017  Score=61.46  Aligned_cols=264  Identities=13%  Similarity=0.192  Sum_probs=172.3

Q ss_pred             HHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccc----cCCCCCHHHHHHHHHHHHHhccccc-hhhhhhccCCcHHH
Q 020640           51 AKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESK----CENGINPNLQEDVITTLLNLSIHDN-NKKLVAETPMVIPL  125 (323)
Q Consensus        51 ~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~----~~~~~~~~~~~~a~~~L~~ls~~~~-~~~~i~~~~g~i~~  125 (323)
                      +.+|+-+.+ ++.+...+.. ..++..|..+-.-..    .....++.+...|+++|.|+-.... .|..+++.+ ..+.
T Consensus         2 L~~LRiLsR-d~~~~~~l~~-~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~-~~~~   78 (446)
T PF10165_consen    2 LETLRILSR-DPTGLDPLFT-EEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLG-LAEK   78 (446)
T ss_pred             HHHHHHHcc-Ccccchhhcc-HHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcC-cHHH
Confidence            456666775 4555566665 556666665541000    0016688999999999999877766 576676665 6888


Q ss_pred             HHHHHhcC-----CHHHHHHHHHHHHHhcC-CCCchhhhhc-cCChHHHHHHhhh-----------------cCHhHHHH
Q 020640          126 LMDALRSG-----TIETRSNAAAALFTLSA-LDSNKEVIGK-SGALKPLIDLLDE-----------------GHQSAMKD  181 (323)
Q Consensus       126 Lv~ll~~~-----~~~~~~~a~~~L~~L~~-~~~~~~~i~~-~g~i~~Lv~lL~~-----------------~~~~~~~~  181 (323)
                      ++..|+..     +.+..--..++|+-++. ..+.+..+++ .+++..++..|..                 .+......
T Consensus        79 l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~E  158 (446)
T PF10165_consen   79 LCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSE  158 (446)
T ss_pred             HHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHH
Confidence            99999876     78888899999998864 4556777777 5788888887652                 13345778


Q ss_pred             HHHHHHHhccCCchhHHHHhhCchHHHHHHhh-------cC----chHHHHHHHHHHHhcC-HHH-------HHHH----
Q 020640          182 VASAIFNLCITHENKARAVRDGGVSVILKKIM-------DG----VHVDELLAILAMLSTN-HRA-------VEEI----  238 (323)
Q Consensus       182 al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~-------~~----~~~~~a~~~L~~l~~~-~~~-------~~~i----  238 (323)
                      ++..++|+..+......--..+.++.++.++.       ..    .+...++.+|.|+-.. .+.       ...+    
T Consensus       159 iLKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~  238 (446)
T PF10165_consen  159 ILKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEG  238 (446)
T ss_pred             HHHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCC
Confidence            99999999776654332112234444444432       11    3566677777777332 111       1111    


Q ss_pred             HhcCCHHHHHHHHhcc----CC---hhHHHHHHHHHHHhcccChHhHHHHHh---------------hcccHHHHHHHhh
Q 020640          239 GDLGGVSCMLRIIRES----TC---DRNKENCIAILHTICLSDRTKWKAMRE---------------EESTHGTISKLAQ  296 (323)
Q Consensus       239 ~~~g~i~~Lv~ll~~~----~~---~~~~~~a~~~L~~L~~~~~~~~~~~~~---------------~~~~i~~L~~ll~  296 (323)
                      .....+..|+++|...    ..   +..-...+.+|.+++..+...++.+..               ....-..|++++.
T Consensus       239 ~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt  318 (446)
T PF10165_consen  239 DNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMT  318 (446)
T ss_pred             CChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhC
Confidence            1223578888887641    11   235566778888888876543333322               4467788999999


Q ss_pred             cCCHHHHHHHHHHHHHHhcch
Q 020640          297 DGTARAKRKATGILERLKRTV  317 (323)
Q Consensus       297 ~~~~~~~~~A~~~L~~l~~~~  317 (323)
                      +..+.++..++..|..||+-.
T Consensus       319 ~~~~~~k~~vaellf~Lc~~d  339 (446)
T PF10165_consen  319 SPDPQLKDAVAELLFVLCKED  339 (446)
T ss_pred             CCCchHHHHHHHHHHHHHhhh
Confidence            888999999999999999643

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.91  E-value=0.00074  Score=65.37  Aligned_cols=257  Identities=10%  Similarity=0.034  Sum_probs=156.8

Q ss_pred             chhHHHHHHHHHHHhccChhh-HHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhcc-ccchhhhhhccCC
Q 020640           44 LPDQTEAAKELRLLTKRMPSF-RALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSI-HDNNKKLVAETPM  121 (323)
Q Consensus        44 ~~~~~~a~~~L~~l~~~~~~~-~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~-~~~~~~~i~~~~g  121 (323)
                      ..+|..|+.+|.|--.....+ ....-. .-.+...++.-+      +++.+++..|...|..+-. .-+....-.... 
T Consensus       188 ~~vRLaa~~aL~nsLef~~~nF~~E~er-n~iMqvvcEatq------~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~a-  259 (859)
T KOG1241|consen  188 AAVRLAALNALYNSLEFTKANFNNEMER-NYIMQVVCEATQ------SPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQA-  259 (859)
T ss_pred             hhHHHHHHHHHHHHHHHHHHhhccHhhh-ceeeeeeeeccc------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            445666666666644322211 111111 223344444444      7899999999999876632 222222222221 


Q ss_pred             cHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCc------------h----hhhh-c--cCChHHHHHHhhh-------cC
Q 020640          122 VIPLLMDALRSGTIETRSNAAAALFTLSALDSN------------K----EVIG-K--SGALKPLIDLLDE-------GH  175 (323)
Q Consensus       122 ~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~------------~----~~i~-~--~g~i~~Lv~lL~~-------~~  175 (323)
                      ....-+.-+++.++++...++..=.+++..+-.            .    ..+. .  .+++|.|+++|..       ++
T Consensus       260 lfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~Dd  339 (859)
T KOG1241|consen  260 LFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDD  339 (859)
T ss_pred             HHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCccccc
Confidence            333344556788999999998887777642211            0    1111 1  3678888888864       13


Q ss_pred             HhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHh----hcC--chHHHHHHHHHHHhcCH-HHHHHHHhcCCHHHHH
Q 020640          176 QSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKI----MDG--VHVDELLAILAMLSTNH-RAVEEIGDLGGVSCML  248 (323)
Q Consensus       176 ~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll----~~~--~~~~~a~~~L~~l~~~~-~~~~~i~~~g~i~~Lv  248 (323)
                      ......|..+|.-++..       +....++.++.++    +++  .-++.++.++..+-..+ ..+..=...++++.++
T Consensus       340 Wnp~kAAg~CL~l~A~~-------~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii  412 (859)
T KOG1241|consen  340 WNPAKAAGVCLMLFAQC-------VGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSII  412 (859)
T ss_pred             CcHHHHHHHHHHHHHHH-------hcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHH
Confidence            34566666666554322       2223344444444    444  45777888887777764 3333334457899999


Q ss_pred             HHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhcch
Q 020640          249 RIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTV  317 (323)
Q Consensus       249 ~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~  317 (323)
                      .++.++ +-.++..++|+|..++..-++.+-.-......+..|++.+. +.|++-.+++|++.+|.+..
T Consensus       413 ~lm~D~-sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~-DePrva~N~CWAf~~Laea~  479 (859)
T KOG1241|consen  413 NLMSDP-SLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLN-DEPRVASNVCWAFISLAEAA  479 (859)
T ss_pred             HHhcCc-hhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhh-hCchHHHHHHHHHHHHHHHH
Confidence            999954 48889999999999999887643333334556666666665 68999999999999998643

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=97.90  E-value=0.0048  Score=54.50  Aligned_cols=239  Identities=13%  Similarity=0.125  Sum_probs=168.8

Q ss_pred             CHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccc-h---hhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 020640           74 AIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDN-N---KKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLS  149 (323)
Q Consensus        74 ~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~-~---~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~  149 (323)
                      .+|.+...|+.+-.  .++..++..+++.+..+-.+.+ |   ....+-+.|+.+.++..+..++.++.+.|...+..++
T Consensus        79 lapnlmpdLQrGLi--addasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikria  156 (524)
T KOG4413|consen   79 LAPNLMPDLQRGLI--ADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIA  156 (524)
T ss_pred             hchhhhHHHHhccc--CCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence            45555555554443  6778888888887776654444 2   2233335678999999999999999999999999999


Q ss_pred             CCCCchhhhhccCChHHH--HHHhhhcCHhHHHHHHHHHHHhccCC-chhHHHHhhCchHHHHHHhhcC---chHHHHHH
Q 020640          150 ALDSNKEVIGKSGALKPL--IDLLDEGHQSAMKDVASAIFNLCITH-ENKARAVRDGGVSVILKKIMDG---VHVDELLA  223 (323)
Q Consensus       150 ~~~~~~~~i~~~g~i~~L--v~lL~~~~~~~~~~al~aL~~L~~~~-~~~~~i~~~g~v~~Lv~ll~~~---~~~~~a~~  223 (323)
                      .++.....+.+......+  ..+....+.-++...+..+..+..-. +.....-..|.+..|..-|+..   -++..++.
T Consensus       157 lfpaaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciE  236 (524)
T KOG4413|consen  157 LFPAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIE  236 (524)
T ss_pred             hcHHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHH
Confidence            999888888876666544  34444556667777888877775543 4555566678888877777642   35788889


Q ss_pred             HHHHHhcCHHHHHHHHhcCCHHHHHHHHhccC-ChhHHHHHHHHHHHhcccC------hHh-HHHHHhhcccHHHHHHHh
Q 020640          224 ILAMLSTNHRAVEEIGDLGGVSCMLRIIREST-CDRNKENCIAILHTICLSD------RTK-WKAMREEESTHGTISKLA  295 (323)
Q Consensus       224 ~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~~~-~~~~~~~a~~~L~~L~~~~------~~~-~~~~~~~~~~i~~L~~ll  295 (323)
                      ....|+..+.+++.+.++|.|+.+..++...+ ++.-+..+......+....      ++. ++..+   -+++.-.+.+
T Consensus       237 lvteLaeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaiceali---iaidgsfEmi  313 (524)
T KOG4413|consen  237 LVTELAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALI---IAIDGSFEMI  313 (524)
T ss_pred             HHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHH---HHHHhhHHhh
Confidence            99999999999999999999999999997533 2445555665555544332      111 12221   3556666778


Q ss_pred             hcCCHHHHHHHHHHHHHHhcch
Q 020640          296 QDGTARAKRKATGILERLKRTV  317 (323)
Q Consensus       296 ~~~~~~~~~~A~~~L~~l~~~~  317 (323)
                      ..+++...+.|..++-.|....
T Consensus       314 EmnDpdaieaAiDalGilGSnt  335 (524)
T KOG4413|consen  314 EMNDPDAIEAAIDALGILGSNT  335 (524)
T ss_pred             hcCCchHHHHHHHHHHhccCCc
Confidence            8889999999999988876543

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.87  E-value=0.016  Score=53.10  Aligned_cols=245  Identities=13%  Similarity=0.167  Sum_probs=173.1

Q ss_pred             hhhhHHHHHHHHhc-CCchhHHHHHHHHHHHhccCh---------hhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHH
Q 020640           28 ADRDHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMP---------SFRALFGESHDAIPQLLSPLSESKCENGINPNLQE   97 (323)
Q Consensus        28 ~~~~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~---------~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~   97 (323)
                      -+..+++.|+.+|. ++.++....+..|..++..+.         ..-..+++ .++++.|++-+.+-..-..+...-..
T Consensus       122 veln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvd-g~vlaLLvqnveRLdEsvkeea~gv~  200 (536)
T KOG2734|consen  122 VELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVD-GQVLALLVQNVERLDESVKEEADGVH  200 (536)
T ss_pred             HHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHh-ccHHHHHHHHHHHhhhcchhhhhhhH
Confidence            34578999999996 778888889999998885433         12345777 78888888777643110012233456


Q ss_pred             HHHHHHHHhccccc-hhhhhhccCCcHHHHHHHHhc--CCHHHHHHHHHHHHHhcCCCC-chhhhhccCChHHHHHHhhh
Q 020640           98 DVITTLLNLSIHDN-NKKLVAETPMVIPLLMDALRS--GTIETRSNAAAALFTLSALDS-NKEVIGKSGALKPLIDLLDE  173 (323)
Q Consensus        98 ~a~~~L~~ls~~~~-~~~~i~~~~g~i~~Lv~ll~~--~~~~~~~~a~~~L~~L~~~~~-~~~~i~~~g~i~~Lv~lL~~  173 (323)
                      .++..+-|+....+ ....+++. |.+..|+.-+..  +-...+..|..+|.-+-.+.+ ++.......++..+++-+.-
T Consensus       201 ~~L~vveNlv~~r~~~~~~~~e~-~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~  279 (536)
T KOG2734|consen  201 NTLAVVENLVEVRPAICTEIVEQ-GLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAV  279 (536)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHh-hHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcch
Confidence            67777778765444 56666775 677776664433  334567778888888865544 78888888889999887642


Q ss_pred             ----c-----CHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcC-chHHHHHHHHHHHhcCH---HHHHHHHh
Q 020640          174 ----G-----HQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG-VHVDELLAILAMLSTNH---RAVEEIGD  240 (323)
Q Consensus       174 ----~-----~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~-~~~~~a~~~L~~l~~~~---~~~~~i~~  240 (323)
                          +     ..+..++.-.+|+.+-....++..++...+++.+.=+++.. ..+-.++.+|-....++   ++...+++
T Consensus       280 yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~Kk~sr~SalkvLd~am~g~~gt~~C~kfVe  359 (536)
T KOG2734|consen  280 YKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLREKKVSRGSALKVLDHAMFGPEGTPNCNKFVE  359 (536)
T ss_pred             hhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHHHHHhhhhHHHHHHHHHhCCCchHHHHHHHH
Confidence                1     34577888889999889999999999988888777777655 56788999999888864   67778888


Q ss_pred             cCCHHHHHHHHh-c--------cCChhHHHHHHHHHHHhcccC
Q 020640          241 LGGVSCMLRIIR-E--------STCDRNKENCIAILHTICLSD  274 (323)
Q Consensus       241 ~g~i~~Lv~ll~-~--------~~~~~~~~~a~~~L~~L~~~~  274 (323)
                      .+|+..+..+.. .        ...+..-++.+.+|+.+-.+.
T Consensus       360 ~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~~~  402 (536)
T KOG2734|consen  360 ILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLRNL  402 (536)
T ss_pred             HHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHHhc
Confidence            888888775554 2        122556777888888776533

>TIGR02270 conserved hypothetical protein

Probab=97.87  E-value=0.0054  Score=57.19  Aligned_cols=220  Identities=12%  Similarity=0.010  Sum_probs=121.6

Q ss_pred             hhhHHHHHHHHhc--CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHh
Q 020640           29 DRDHFLSLLKKMS--ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNL  106 (323)
Q Consensus        29 ~~~~i~~Lv~~l~--~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~l  106 (323)
                      ....++.|+..|.  ++..++..++..+  ....+          ..+++.|+..|.      +.++.++..++.+|..+
T Consensus        52 G~~a~~~L~~aL~~d~~~ev~~~aa~al--~~~~~----------~~~~~~L~~~L~------d~~~~vr~aaa~ALg~i  113 (410)
T TIGR02270        52 GKAATELLVSALAEADEPGRVACAALAL--LAQED----------ALDLRSVLAVLQ------AGPEGLCAGIQAALGWL  113 (410)
T ss_pred             hHhHHHHHHHHHhhCCChhHHHHHHHHH--hccCC----------hHHHHHHHHHhc------CCCHHHHHHHHHHHhcC
Confidence            3457888888885  3344444444333  22211          223777888887      66777888888877644


Q ss_pred             ccccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHH
Q 020640          107 SIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAI  186 (323)
Q Consensus       107 s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL  186 (323)
                      -           ...+.+.|+.++++.++.++..++.++...           .....+.|..+|++.++.++..|+++|
T Consensus       114 ~-----------~~~a~~~L~~~L~~~~p~vR~aal~al~~r-----------~~~~~~~L~~~L~d~d~~Vra~A~raL  171 (410)
T TIGR02270       114 G-----------GRQAEPWLEPLLAASEPPGRAIGLAALGAH-----------RHDPGPALEAALTHEDALVRAAALRAL  171 (410)
T ss_pred             C-----------chHHHHHHHHHhcCCChHHHHHHHHHHHhh-----------ccChHHHHHHHhcCCCHHHHHHHHHHH
Confidence            2           123456667777777777666666555441           112345666777766777777777777


Q ss_pred             HHhccCCchhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcCHHHHHH------------------HHhc----C
Q 020640          187 FNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEE------------------IGDL----G  242 (323)
Q Consensus       187 ~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~~~~~~~------------------i~~~----g  242 (323)
                      ..+-.          ...++.|...+.+.  .++..|+..+..+-. ++....                  +...    .
T Consensus       172 G~l~~----------~~a~~~L~~al~d~~~~VR~aA~~al~~lG~-~~A~~~l~~~~~~~g~~~~~~l~~~lal~~~~~  240 (410)
T TIGR02270       172 GELPR----------RLSESTLRLYLRDSDPEVRFAALEAGLLAGS-RLAWGVCRRFQVLEGGPHRQRLLVLLAVAGGPD  240 (410)
T ss_pred             Hhhcc----------ccchHHHHHHHcCCCHHHHHHHHHHHHHcCC-HhHHHHHHHHHhccCccHHHHHHHHHHhCCchh
Confidence            66532          12344455555443  455555555544422 111111                  0111    2


Q ss_pred             CHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhcc
Q 020640          243 GVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRT  316 (323)
Q Consensus       243 ~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~  316 (323)
                      .++.|..++++   +.+++.++.++..+-            +...++.|++.+.+  +.+.+.|-.+++.++..
T Consensus       241 a~~~L~~ll~d---~~vr~~a~~AlG~lg------------~p~av~~L~~~l~d--~~~aR~A~eA~~~ItG~  297 (410)
T TIGR02270       241 AQAWLRELLQA---AATRREALRAVGLVG------------DVEAAPWCLEAMRE--PPWARLAGEAFSLITGM  297 (410)
T ss_pred             HHHHHHHHhcC---hhhHHHHHHHHHHcC------------CcchHHHHHHHhcC--cHHHHHHHHHHHHhhCC
Confidence            34444455543   235666666555432            23466777777663  33888888888888763

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.80  E-value=0.0027  Score=61.64  Aligned_cols=268  Identities=13%  Similarity=0.138  Sum_probs=166.7

Q ss_pred             hHHHHHHHHhc-CC-chhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhc-
Q 020640           31 DHFLSLLKKMS-AT-LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLS-  107 (323)
Q Consensus        31 ~~i~~Lv~~l~-~~-~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls-  107 (323)
                      +.++.|++... +. ..+|..++.+|..+|.+ -.-.........++-.++.-.+..    ..+..++-.|+.+|.|-- 
T Consensus       129 ~li~~lv~nv~~~~~~~~k~~slealGyice~-i~pevl~~~sN~iLtaIv~gmrk~----e~s~~vRLaa~~aL~nsLe  203 (859)
T KOG1241|consen  129 ELIVTLVSNVGEEQASMVKESSLEALGYICED-IDPEVLEQQSNDILTAIVQGMRKE----ETSAAVRLAALNALYNSLE  203 (859)
T ss_pred             HHHHHHHHhcccccchHHHHHHHHHHHHHHcc-CCHHHHHHHHhHHHHHHHhhcccc----CCchhHHHHHHHHHHHHHH
Confidence            45566666663 33 34788899999999954 333322223133555666666533    557788999999998642 


Q ss_pred             ccc------chhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcC-CCCchhhhhccCChHHHHHHhhhcCHhHHH
Q 020640          108 IHD------NNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSA-LDSNKEVIGKSGALKPLIDLLDEGHQSAMK  180 (323)
Q Consensus       108 ~~~------~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~  180 (323)
                      .-.      ..|.-      +.......-++++.+++..|...|..+.. +-+....-+........+..++++++++..
T Consensus       204 f~~~nF~~E~ern~------iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deVal  277 (859)
T KOG1241|consen  204 FTKANFNNEMERNY------IMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVAL  277 (859)
T ss_pred             HHHHhhccHhhhce------eeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence            111      12222      23333445567889999999999988853 222222223334556666778888999999


Q ss_pred             HHHHHHHHhccCC-chh---HHHHh---------------hCchHHHHHHhhcC---------chHHHHHHHHHHHhcCH
Q 020640          181 DVASAIFNLCITH-ENK---ARAVR---------------DGGVSVILKKIMDG---------VHVDELLAILAMLSTNH  232 (323)
Q Consensus       181 ~al~aL~~L~~~~-~~~---~~i~~---------------~g~v~~Lv~ll~~~---------~~~~~a~~~L~~l~~~~  232 (323)
                      .+...=.++|... +..   ....+               .+++|.|+++|...         .+.+.|-.+|.-++.+ 
T Consensus       278 QaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~-  356 (859)
T KOG1241|consen  278 QAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQC-  356 (859)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHH-
Confidence            9988877777543 211   11111               15677888888631         3444444444444431 


Q ss_pred             HHHHHHHhcCCHHHHHHHHhc---cCChhHHHHHHHHHHHhcccChH-hHHHHHhhcccHHHHHHHhhcCCHHHHHHHHH
Q 020640          233 RAVEEIGDLGGVSCMLRIIRE---STCDRNKENCIAILHTICLSDRT-KWKAMREEESTHGTISKLAQDGTARAKRKATG  308 (323)
Q Consensus       233 ~~~~~i~~~g~i~~Lv~ll~~---~~~~~~~~~a~~~L~~L~~~~~~-~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~  308 (323)
                            ++..+++++..+++.   .++-+-++.|+-++..+-...+. +...++  .+.++.++++..+.+-.+++-+.|
T Consensus       357 ------~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV--~qalp~ii~lm~D~sl~VkdTaAw  428 (859)
T KOG1241|consen  357 ------VGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIV--IQALPSIINLMSDPSLWVKDTAAW  428 (859)
T ss_pred             ------hcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHH--hhhhHHHHHHhcCchhhhcchHHH
Confidence                  222344555555543   22245578888888888776544 334443  589999999999889999999999


Q ss_pred             HHHHHhcchh
Q 020640          309 ILERLKRTVN  318 (323)
Q Consensus       309 ~L~~l~~~~~  318 (323)
                      .|-.++++-+
T Consensus       429 tlgrI~d~l~  438 (859)
T KOG1241|consen  429 TLGRIADFLP  438 (859)
T ss_pred             HHHHHHhhch
Confidence            9999998654

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.71  E-value=0.0021  Score=60.40  Aligned_cols=241  Identities=15%  Similarity=0.146  Sum_probs=164.6

Q ss_pred             HHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCc
Q 020640           75 IPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSN  154 (323)
Q Consensus        75 i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~  154 (323)
                      ++.++.+|++.--  ..++..+..-+.-|..|=..+ ....+.--+.+.+.|+.+|.+++++++..+-.++.++-..-.+
T Consensus       165 L~~~ipLL~eriy--~~n~~tR~flv~Wl~~Lds~P-~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s  241 (675)
T KOG0212|consen  165 LPEFIPLLRERIY--VINPMTRQFLVSWLYVLDSVP-DLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRS  241 (675)
T ss_pred             HHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhcCC-cHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhc
Confidence            4444444442111  457788888888777663332 2333332334677789999999999998888777776432223


Q ss_pred             hhhhhc-cCChHHHHHHhhhcCHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcCc---hHHHH---HHHHHH
Q 020640          155 KEVIGK-SGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDGV---HVDEL---LAILAM  227 (323)
Q Consensus       155 ~~~i~~-~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~~---~~~~a---~~~L~~  227 (323)
                      ....++ ...++.++.-+.+.++.++..|+..|..+..-.....-..-.|.+..++..+.+.+   .++.+   -..|..
T Consensus       242 ~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~  321 (675)
T KOG0212|consen  242 SPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLK  321 (675)
T ss_pred             CccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHH
Confidence            333324 56789999999999999999999999888765554444444566677777776552   22222   233455


Q ss_pred             HhcCHHHHHHHHhcC-CHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHH
Q 020640          228 LSTNHRAVEEIGDLG-GVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKA  306 (323)
Q Consensus       228 l~~~~~~~~~i~~~g-~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A  306 (323)
                      +...+...+. ++-| .+..+.+.+.++. ...+..+..-+..|-...|+.  -+.......+.|++-+.+.++++...+
T Consensus       322 l~s~~~~~~~-id~~~ii~vl~~~l~~~~-~~tri~~L~Wi~~l~~~~p~q--l~~h~~~if~tLL~tLsd~sd~vvl~~  397 (675)
T KOG0212|consen  322 LVSSERLKEE-IDYGSIIEVLTKYLSDDR-EETRIAVLNWIILLYHKAPGQ--LLVHNDSIFLTLLKTLSDRSDEVVLLA  397 (675)
T ss_pred             HHhhhhhccc-cchHHHHHHHHHHhhcch-HHHHHHHHHHHHHHHhhCcch--hhhhccHHHHHHHHhhcCchhHHHHHH
Confidence            5555555444 4444 5778888888554 888999998888888887774  333356888999999999999999999


Q ss_pred             HHHHHHHhcchhhccC
Q 020640          307 TGILERLKRTVNLTHT  322 (323)
Q Consensus       307 ~~~L~~l~~~~~~~~~  322 (323)
                      ..++..++......|+
T Consensus       398 L~lla~i~~s~~~~~~  413 (675)
T KOG0212|consen  398 LSLLASICSSSNSPNL  413 (675)
T ss_pred             HHHHHHHhcCcccccH
Confidence            9999999988776654

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=97.71  E-value=0.0013  Score=65.85  Aligned_cols=140  Identities=19%  Similarity=0.170  Sum_probs=116.7

Q ss_pred             HHHHHHHHHHHHHhc-CCCCchhhhhc----cCChHHHHHHhhh-cCHhHHHHHHHHHHHhccCCchhHHHHhhCchHHH
Q 020640          135 IETRSNAAAALFTLS-ALDSNKEVIGK----SGALKPLIDLLDE-GHQSAMKDVASAIFNLCITHENKARAVRDGGVSVI  208 (323)
Q Consensus       135 ~~~~~~a~~~L~~L~-~~~~~~~~i~~----~g~i~~Lv~lL~~-~~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~L  208 (323)
                      .+-...+..+|.|+- .+++....+..    -|-.+.+..++.. +++.+...|+..+..++.+.+....+++.|++..|
T Consensus      1739 ~~~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~L 1818 (2235)
T KOG1789|consen 1739 ETKVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTL 1818 (2235)
T ss_pred             HHHHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHH
Confidence            345667899999985 45544444433    4566777777776 57889999999999999999999999999999999


Q ss_pred             HHHhhcC-chHHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHhcccC
Q 020640          209 LKKIMDG-VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSD  274 (323)
Q Consensus       209 v~ll~~~-~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~  274 (323)
                      +.+|.+- ..++.++.+|..|+++++...+..++|++..+..++-....+..+.+++..+..|..+.
T Consensus      1819 L~lLHS~PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adk 1885 (2235)
T KOG1789|consen 1819 LTLLHSQPSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADK 1885 (2235)
T ss_pred             HHHHhcChHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhcc
Confidence            9999876 78999999999999999999999999999999999976665888888999999987754

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=97.64  E-value=0.0018  Score=55.50  Aligned_cols=182  Identities=15%  Similarity=0.079  Sum_probs=111.3

Q ss_pred             cCCHHHHHHHHHHHHHhcCCC---Cchhhhhc--cCChHHHHHHhhhcCHhHHHHHHHHHHHhccCCchhHHHHhhCchH
Q 020640          132 SGTIETRSNAAAALFTLSALD---SNKEVIGK--SGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVS  206 (323)
Q Consensus       132 ~~~~~~~~~a~~~L~~L~~~~---~~~~~i~~--~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~  206 (323)
                      +.+=+.+..++.-|..+....   .....+.+  ...+..+...+.+....+...|+.++..|+..-.....-.-...+|
T Consensus        18 ~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~   97 (228)
T PF12348_consen   18 ESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLP   97 (228)
T ss_dssp             -SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHH
Confidence            345566777788888876433   33344433  2455677777777777899999999999987654444333334788


Q ss_pred             HHHHHhhcC--chHHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHhcccCh---HhHHHH
Q 020640          207 VILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDR---TKWKAM  281 (323)
Q Consensus       207 ~Lv~ll~~~--~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~---~~~~~~  281 (323)
                      .|++.+.++  .+++.|..+|..++..-..-..+.    +..+...+.+ .++.++..++..+..+....+   .....-
T Consensus        98 ~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~----~~~l~~~~~~-Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~  172 (228)
T PF12348_consen   98 PLLKKLGDSKKFIREAANNALDAIIESCSYSPKIL----LEILSQGLKS-KNPQVREECAEWLAIILEKWGSDSSVLQKS  172 (228)
T ss_dssp             HHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHH----HHHHHHHTT--S-HHHHHHHHHHHHHHHTT-----GGG--H
T ss_pred             HHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHH----HHHHHHHHhC-CCHHHHHHHHHHHHHHHHHccchHhhhccc
Confidence            898888876  578888888888888533111221    3445555564 459999999999999877665   111111


Q ss_pred             HhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhcchh
Q 020640          282 REEESTHGTISKLAQDGTARAKRKATGILERLKRTVN  318 (323)
Q Consensus       282 ~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~  318 (323)
                      ..-...++.+.+.+.+.++++++.|..++..+.++.+
T Consensus       173 ~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~  209 (228)
T PF12348_consen  173 AFLKQLVKALVKLLSDADPEVREAARECLWALYSHFP  209 (228)
T ss_dssp             HHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-
T ss_pred             chHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC
Confidence            1013578888899999999999999999999987654

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>TIGR02270 conserved hypothetical protein

Probab=97.63  E-value=0.012  Score=54.84  Aligned_cols=191  Identities=17%  Similarity=0.093  Sum_probs=128.5

Q ss_pred             CCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC
Q 020640           73 DAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALD  152 (323)
Q Consensus        73 g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~  152 (323)
                      .+++.|+..|..     ++++++...++.++...  .         ...++..|+..+.+.++.++..++.+|..+    
T Consensus        54 ~a~~~L~~aL~~-----d~~~ev~~~aa~al~~~--~---------~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i----  113 (410)
T TIGR02270        54 AATELLVSALAE-----ADEPGRVACAALALLAQ--E---------DALDLRSVLAVLQAGPEGLCAGIQAALGWL----  113 (410)
T ss_pred             hHHHHHHHHHhh-----CCChhHHHHHHHHHhcc--C---------ChHHHHHHHHHhcCCCHHHHHHHHHHHhcC----
Confidence            468888888853     45667666555544322  1         111378899999999999999999998754    


Q ss_pred             CchhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhc
Q 020640          153 SNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLST  230 (323)
Q Consensus       153 ~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~  230 (323)
                            ......+.|+.+|.++++.++..++.++...           .....+.+..+|++.  .++..|+++|..+-.
T Consensus       114 ------~~~~a~~~L~~~L~~~~p~vR~aal~al~~r-----------~~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~  176 (410)
T TIGR02270       114 ------GGRQAEPWLEPLLAASEPPGRAIGLAALGAH-----------RHDPGPALEAALTHEDALVRAAALRALGELPR  176 (410)
T ss_pred             ------CchHHHHHHHHHhcCCChHHHHHHHHHHHhh-----------ccChHHHHHHHhcCCCHHHHHHHHHHHHhhcc
Confidence                  3345789999999999999999888877661           123456788888766  678999998887654


Q ss_pred             CHHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHH------------------HH---hhcccHH
Q 020640          231 NHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKA------------------MR---EEESTHG  289 (323)
Q Consensus       231 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~------------------~~---~~~~~i~  289 (323)
                                ...++.|...+.+. ++.++..|+..+..+...  .....                  ++   .....++
T Consensus       177 ----------~~a~~~L~~al~d~-~~~VR~aA~~al~~lG~~--~A~~~l~~~~~~~g~~~~~~l~~~lal~~~~~a~~  243 (410)
T TIGR02270       177 ----------RLSESTLRLYLRDS-DPEVRFAALEAGLLAGSR--LAWGVCRRFQVLEGGPHRQRLLVLLAVAGGPDAQA  243 (410)
T ss_pred             ----------ccchHHHHHHHcCC-CHHHHHHHHHHHHHcCCH--hHHHHHHHHHhccCccHHHHHHHHHHhCCchhHHH
Confidence                      23455567667754 488999999888776431  11111                  11   1224555


Q ss_pred             HHHHHhhcCCHHHHHHHHHHHHHHhc
Q 020640          290 TISKLAQDGTARAKRKATGILERLKR  315 (323)
Q Consensus       290 ~L~~ll~~~~~~~~~~A~~~L~~l~~  315 (323)
                      .|..++++.  .++..+..+|-.+..
T Consensus       244 ~L~~ll~d~--~vr~~a~~AlG~lg~  267 (410)
T TIGR02270       244 WLRELLQAA--ATRREALRAVGLVGD  267 (410)
T ss_pred             HHHHHhcCh--hhHHHHHHHHHHcCC
Confidence            666666653  378888877776654

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=97.60  E-value=0.00032  Score=50.33  Aligned_cols=87  Identities=29%  Similarity=0.400  Sum_probs=69.2

Q ss_pred             HHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCc
Q 020640           75 IPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSN  154 (323)
Q Consensus        75 i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~  154 (323)
                      ||.|++.|..     ++++.++..++.+|..+-.           ..+++.|+.+++++++.++..++.+|..+.     
T Consensus         1 i~~L~~~l~~-----~~~~~vr~~a~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~-----   59 (88)
T PF13646_consen    1 IPALLQLLQN-----DPDPQVRAEAARALGELGD-----------PEAIPALIELLKDEDPMVRRAAARALGRIG-----   59 (88)
T ss_dssp             HHHHHHHHHT-----SSSHHHHHHHHHHHHCCTH-----------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCH-----
T ss_pred             CHHHHHHHhc-----CCCHHHHHHHHHHHHHcCC-----------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhC-----
Confidence            6789998842     7789999999999985421           125889999999999999999999999872     


Q ss_pred             hhhhhccCChHHHHHHhhhc-CHhHHHHHHHHHH
Q 020640          155 KEVIGKSGALKPLIDLLDEG-HQSAMKDVASAIF  187 (323)
Q Consensus       155 ~~~i~~~g~i~~Lv~lL~~~-~~~~~~~al~aL~  187 (323)
                           ...+++.|.+++.++ +..++..|..+|.
T Consensus        60 -----~~~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   60 -----DPEAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             -----HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             -----CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence                 344899999999886 5556888888774

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.60  E-value=0.00011  Score=44.48  Aligned_cols=40  Identities=30%  Similarity=0.485  Sum_probs=36.0

Q ss_pred             CCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHHhcc
Q 020640          152 DSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCI  191 (323)
Q Consensus       152 ~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~  191 (323)
                      ++++..+++.|+++.|++++.++++.++..++++|+||+.
T Consensus         2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~   41 (41)
T smart00185        2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS   41 (41)
T ss_pred             cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence            3467888899999999999999999999999999999973

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=97.60  E-value=0.0084  Score=59.70  Aligned_cols=271  Identities=14%  Similarity=0.098  Sum_probs=160.7

Q ss_pred             hhhhhHHHHHHHHhc---CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHH
Q 020640           27 EADRDHFLSLLKKMS---ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTL  103 (323)
Q Consensus        27 ~~~~~~i~~Lv~~l~---~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L  103 (323)
                      |.....+...+..|.   .|+++|+.|+.++..+...-.+.-....  ..+++.+++-|.        ++..+-.|++++
T Consensus       564 ~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL--~~~L~il~eRl~--------nEiTRl~AvkAl  633 (1233)
T KOG1824|consen  564 PYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNEL--PRTLPILLERLG--------NEITRLTAVKAL  633 (1233)
T ss_pred             hhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhh--HHHHHHHHHHHh--------chhHHHHHHHHH
Confidence            344445666667773   5688999999998887754333222111  235666777666        567888899999


Q ss_pred             HHhccccc--hhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC--CchhhhhccCChHHHHHHhhhcCHhHH
Q 020640          104 LNLSIHDN--NKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALD--SNKEVIGKSGALKPLIDLLDEGHQSAM  179 (323)
Q Consensus       104 ~~ls~~~~--~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~--~~~~~i~~~g~i~~Lv~lL~~~~~~~~  179 (323)
                      ..++...-  +...+...  +++.+...++......+.....++-.|..+-  .......+. ++..+..++.+.+..+.
T Consensus       634 t~Ia~S~l~i~l~~~l~~--il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~-vL~el~~Lisesdlhvt  710 (1233)
T KOG1824|consen  634 TLIAMSPLDIDLSPVLTE--ILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEA-VLVELPPLISESDLHVT  710 (1233)
T ss_pred             HHHHhccceeehhhhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHH-HHHHhhhhhhHHHHHHH
Confidence            88876544  44444443  5888888888877777777777777665322  222222322 55666677777788889


Q ss_pred             HHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcCchHHHHHHHH----HHHhc----------------CH--H----
Q 020640          180 KDVASAIFNLCITHENKARAVRDGGVSVILKKIMDGVHVDELLAIL----AMLST----------------NH--R----  233 (323)
Q Consensus       180 ~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~a~~~L----~~l~~----------------~~--~----  233 (323)
                      ..|..+|..+.........-+..-.++.++.+++++-++-.++.++    ..+..                .|  +    
T Consensus       711 ~~a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll~Spllqg~al~~~l~~f~alV~t~~~~l~y~~l~s~lt~PV~~~~~~  790 (1233)
T KOG1824|consen  711 QLAVAFLTTLAIIQPSSLLKISNPILDEIIRLLRSPLLQGGALSALLLFFQALVITKEPDLDYISLLSLLTAPVYEQVTD  790 (1233)
T ss_pred             HHHHHHHHHHHhcccHHHHHHhhhhHHHHHHHhhCccccchHHHHHHHHHHHHHhcCCCCccHHHHHHHHcCCccccccc
Confidence            9999999988887765554445556677777776652211111111    01100                00  0    


Q ss_pred             ------------HHHHH---Hh-c--CCHHHHH-HHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHH
Q 020640          234 ------------AVEEI---GD-L--GGVSCML-RIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKL  294 (323)
Q Consensus       234 ------------~~~~i---~~-~--g~i~~Lv-~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~l  294 (323)
                                  +...+   .. .  .....|+ ++.....++..+.-|.-.|..+.++-+...     ..+.-..+++-
T Consensus       791 ~l~kqa~~siA~cvA~Lt~~~~~~s~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~s~-----~~e~~~~iiea  865 (1233)
T KOG1824|consen  791 GLHKQAYYSIAKCVAALTCACPQKSKSLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDLSP-----QNELKDTIIEA  865 (1233)
T ss_pred             chhHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCCCc-----chhhHHHHHHH
Confidence                        00000   00 0  1233333 233223346667777777777766543211     12344467777


Q ss_pred             hhcCCHHHHHHHHHHHHHHhc
Q 020640          295 AQDGTARAKRKATGILERLKR  315 (323)
Q Consensus       295 l~~~~~~~~~~A~~~L~~l~~  315 (323)
                      ..+.+++++..|+-+|-+++.
T Consensus       866 f~sp~edvksAAs~ALGsl~v  886 (1233)
T KOG1824|consen  866 FNSPSEDVKSAASYALGSLAV  886 (1233)
T ss_pred             cCCChHHHHHHHHHHhhhhhc
Confidence            888899999999999888764

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=97.60  E-value=0.0079  Score=52.96  Aligned_cols=223  Identities=12%  Similarity=0.037  Sum_probs=151.2

Q ss_pred             chhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchhhhhhccCCcH
Q 020640           44 LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVI  123 (323)
Q Consensus        44 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i  123 (323)
                      +-++.-|+.++.++.- .+++|..+-....+--.++.+++.+    -.+.++|-+.+-+++.++..++....+-+....+
T Consensus       163 ~lTrlfav~cl~~l~~-~~e~R~i~waentcs~r~~e~l~n~----vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli  237 (432)
T COG5231         163 FLTRLFAVSCLSNLEF-DVEKRKIEWAENTCSRRFMEILQNY----VGVKQLQYNSLIIIWILTFSKECAQDIDKMDDLI  237 (432)
T ss_pred             HHHHHHHHHHHhhhhh-hHHHHHHHHHHhhHHHHHHHHHHhh----hhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            4578889999999995 6888887655255667788888865    3367899999999999998887664444433356


Q ss_pred             HHHHHHHhcC-CHHHHHHHHHHHHHhcCCC--CchhhhhccCChHHHHHHhhhc---CHhHHHHHHHH------------
Q 020640          124 PLLMDALRSG-TIETRSNAAAALFTLSALD--SNKEVIGKSGALKPLIDLLDEG---HQSAMKDVASA------------  185 (323)
Q Consensus       124 ~~Lv~ll~~~-~~~~~~~a~~~L~~L~~~~--~~~~~i~~~g~i~~Lv~lL~~~---~~~~~~~al~a------------  185 (323)
                      .-++.+.+.. .+.+..-+++++.|++...  .....+.-.|-+.+-++.|.++   +++++...-+.            
T Consensus       238 ~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~  317 (432)
T COG5231         238 NDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLC  317 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhh
Confidence            6677777764 5677888999999997622  2333344456566777777653   33333222111            


Q ss_pred             -----HHH-----hccCC---------chhHHHHhh--CchHHHHHHhhcC---chHHHHHHHHHHHhc-CHHHHHHHHh
Q 020640          186 -----IFN-----LCITH---------ENKARAVRD--GGVSVILKKIMDG---VHVDELLAILAMLST-NHRAVEEIGD  240 (323)
Q Consensus       186 -----L~~-----L~~~~---------~~~~~i~~~--g~v~~Lv~ll~~~---~~~~~a~~~L~~l~~-~~~~~~~i~~  240 (323)
                           +..     |+.++         +|..++.+.  ..+..|.++++..   .....||.-+..+.. .|+.+..+.+
T Consensus       318 ~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~K  397 (432)
T COG5231         318 IFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSK  397 (432)
T ss_pred             HHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHH
Confidence                 111     12222         233444433  4667788888865   234445655555555 6999999999


Q ss_pred             cCCHHHHHHHHhccCChhHHHHHHHHHHHhcc
Q 020640          241 LGGVSCMLRIIRESTCDRNKENCIAILHTICL  272 (323)
Q Consensus       241 ~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~  272 (323)
                      .|+=+.++.++.+++ ++++-.|..++..+..
T Consensus       398 yg~k~~im~L~nh~d-~~VkfeAl~a~q~~i~  428 (432)
T COG5231         398 YGVKEIIMNLINHDD-DDVKFEALQALQTCIS  428 (432)
T ss_pred             hhhHHHHHHHhcCCC-chhhHHHHHHHHHHHh
Confidence            999999999999665 9999999999887644

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=97.59  E-value=0.00037  Score=50.00  Aligned_cols=84  Identities=25%  Similarity=0.334  Sum_probs=66.6

Q ss_pred             HHHHHHHH-hcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHHhccCCchhHHHHh
Q 020640          123 IPLLMDAL-RSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVR  201 (323)
Q Consensus       123 i~~Lv~ll-~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~i~~  201 (323)
                      ++.|++.+ +++++.++..++.+|..+.          ...+++.|+++++++++.++..|+.+|..+-          .
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----------~   60 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGELG----------DPEAIPALIELLKDEDPMVRRAAARALGRIG----------D   60 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCCT----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------H
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHcC----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------C
Confidence            57788988 7889999999999998442          2247999999999999999999999999761          3


Q ss_pred             hCchHHHHHHhhcC---chHHHHHHHHH
Q 020640          202 DGGVSVILKKIMDG---VHVDELLAILA  226 (323)
Q Consensus       202 ~g~v~~Lv~ll~~~---~~~~~a~~~L~  226 (323)
                      ..+++.|.+++.++   .++..|+.+|.
T Consensus        61 ~~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   61 PEAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence            34888999999865   35777777663

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=97.58  E-value=0.019  Score=50.82  Aligned_cols=261  Identities=12%  Similarity=0.089  Sum_probs=167.6

Q ss_pred             chhHHHHHHHHHHHhccChhh--H--HHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchhhhhhcc
Q 020640           44 LPDQTEAAKELRLLTKRMPSF--R--ALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAET  119 (323)
Q Consensus        44 ~~~~~~a~~~L~~l~~~~~~~--~--~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~  119 (323)
                      ..++.-++..+..+..+.+.+  .  ..+++ .|..+.++...-      .+|.++...|...+..++..++....++++
T Consensus        96 asVKiLackqigcilEdcDtnaVseillvvN-aeilklildcIg------geddeVAkAAiesikrialfpaaleaiFeS  168 (524)
T KOG4413|consen   96 ASVKILACKQIGCILEDCDTNAVSEILLVVN-AEILKLILDCIG------GEDDEVAKAAIESIKRIALFPAALEAIFES  168 (524)
T ss_pred             chhhhhhHhhhhHHHhcCchhhHHHHHHHhh-hhHHHHHHHHHc------CCcHHHHHHHHHHHHHHHhcHHHHHHhccc
Confidence            345555666666655444422  1  22446 888899999887      778999999999999999998888888875


Q ss_pred             CCcHH--HHHHHHhcCCHHHHHHHHHHHHHhc-CCCCchhhhhccCChHHHHHHhhh-cCHhHHHHHHHHHHHhccCCch
Q 020640          120 PMVIP--LLMDALRSGTIETRSNAAAALFTLS-ALDSNKEVIGKSGALKPLIDLLDE-GHQSAMKDVASAIFNLCITHEN  195 (323)
Q Consensus       120 ~g~i~--~Lv~ll~~~~~~~~~~a~~~L~~L~-~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~al~aL~~L~~~~~~  195 (323)
                      . ...  .+.++.-..+.-.+......+-.+. ..++.....-..|.+..|..=++. .+.-++..++.....|+.....
T Consensus       169 e-llDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLaeteHg  247 (524)
T KOG4413|consen  169 E-LLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHG  247 (524)
T ss_pred             c-cCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhh
Confidence            4 222  2333433445555666666666664 444555555567877777766665 4667888999999999998888


Q ss_pred             hHHHHhhCchHHHHHHhhcC--ch--HHHHHHHHH----HHhcCHHHHHHHHhc--CCHHHHHHHHhccCChhHHHHHHH
Q 020640          196 KARAVRDGGVSVILKKIMDG--VH--VDELLAILA----MLSTNHRAVEEIGDL--GGVSCMLRIIRESTCDRNKENCIA  265 (323)
Q Consensus       196 ~~~i~~~g~v~~Lv~ll~~~--~~--~~~a~~~L~----~l~~~~~~~~~i~~~--g~i~~Lv~ll~~~~~~~~~~~a~~  265 (323)
                      +..+.+.|.++.+..++...  ++  +..++....    +.+..+-.-+.+++.  -.|....+++...+ +..++.|..
T Consensus       248 reflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnD-pdaieaAiD  326 (524)
T KOG4413|consen  248 REFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMND-PDAIEAAID  326 (524)
T ss_pred             hhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCC-chHHHHHHH
Confidence            88888999999999888632  22  333433333    333222222333332  24666677777554 889999999


Q ss_pred             HHHHhcccChHhHHHHHhhccc--HHHHHHHhhcC-CHHHHHHHHHHHHHHhc
Q 020640          266 ILHTICLSDRTKWKAMREEEST--HGTISKLAQDG-TARAKRKATGILERLKR  315 (323)
Q Consensus       266 ~L~~L~~~~~~~~~~~~~~~~~--i~~L~~ll~~~-~~~~~~~A~~~L~~l~~  315 (323)
                      ++..+.++.++  +.++...|-  ...|+.-..+. ..--++.+..+|.+++.
T Consensus       327 alGilGSnteG--adlllkTgppaaehllarafdqnahakqeaaihaLaaIag  377 (524)
T KOG4413|consen  327 ALGILGSNTEG--ADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAG  377 (524)
T ss_pred             HHHhccCCcch--hHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhc
Confidence            99999998876  355443332  22233323333 33335566667776654

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.56  E-value=0.029  Score=55.10  Aligned_cols=266  Identities=12%  Similarity=0.119  Sum_probs=122.1

Q ss_pred             hhHHHHHHHHhc-----CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHH
Q 020640           30 RDHFLSLLKKMS-----ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLL  104 (323)
Q Consensus        30 ~~~i~~Lv~~l~-----~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~  104 (323)
                      ++++--+...++     ++..+..-|+.+|.+++.  ++..      ....|.+.++|+      ..++.++.+|+.+..
T Consensus       102 qdvllLltNslknDL~s~nq~vVglAL~alg~i~s--~Ema------rdlapeVe~Ll~------~~~~~irKKA~Lca~  167 (866)
T KOG1062|consen  102 QDLLLLLTNSLKNDLNSSNQYVVGLALCALGNICS--PEMA------RDLAPEVERLLQ------HRDPYIRKKAALCAV  167 (866)
T ss_pred             hHHHHHHHHHHHhhccCCCeeehHHHHHHhhccCC--HHHh------HHhhHHHHHHHh------CCCHHHHHHHHHHHH
Confidence            344444444442     335556667777777762  3332      224444555566      446666666666555


Q ss_pred             Hhccc-cc--------hhhhhhcc-CCc----HHHHHHHHhcC------CHHHHHHHHHHHHHhcCCC---Cc-----hh
Q 020640          105 NLSIH-DN--------NKKLVAET-PMV----IPLLMDALRSG------TIETRSNAAAALFTLSALD---SN-----KE  156 (323)
Q Consensus       105 ~ls~~-~~--------~~~~i~~~-~g~----i~~Lv~ll~~~------~~~~~~~a~~~L~~L~~~~---~~-----~~  156 (323)
                      .+=.. ++        .+..+.++ .|+    +..+..+++.+      -.++...-+.+|.++....   +.     ..
T Consensus       168 r~irK~P~l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~d  247 (866)
T KOG1062|consen  168 RFIRKVPDLVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISD  247 (866)
T ss_pred             HHHHcCchHHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCc
Confidence            44221 11        12222221 122    33344444332      1234444556666664211   10     01


Q ss_pred             hhhccCChHHHHHHhhhcCHhHHHHHHHHHHHhccCCc---hhHHHHhhCchHHHHHHhhcCchHHHHHHHHHHHhcCHH
Q 020640          157 VIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHE---NKARAVRDGGVSVILKKIMDGVHVDELLAILAMLSTNHR  233 (323)
Q Consensus       157 ~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~---~~~~i~~~g~v~~Lv~ll~~~~~~~~a~~~L~~l~~~~~  233 (323)
                      .+.+.. +-.++++|-.++++....-...|..++...+   |....+=...|..++.+..++.++..|+.+|...-.+++
T Consensus       248 PFLQi~-iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d  326 (866)
T KOG1062|consen  248 PFLQIR-ILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRD  326 (866)
T ss_pred             hHHHHH-HHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCc
Confidence            111110 1123344445566666666666666655443   222222222444444444444455555555444444321


Q ss_pred             HHHH---------HHhc--CC----HHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcC
Q 020640          234 AVEE---------IGDL--GG----VSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDG  298 (323)
Q Consensus       234 ~~~~---------i~~~--g~----i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~  298 (323)
                      +--+         +++.  .+    =..+++.+++.+ ..+|+.|...+..|...+  +.+.++      ..|++++.+.
T Consensus       327 ~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD-~SIkrralELs~~lvn~~--Nv~~mv------~eLl~fL~~~  397 (866)
T KOG1062|consen  327 NNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPD-VSIKRRALELSYALVNES--NVRVMV------KELLEFLESS  397 (866)
T ss_pred             cceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCc-HHHHHHHHHHHHHHhccc--cHHHHH------HHHHHHHHhc
Confidence            1100         0000  00    134566677544 777888888888877765  344443      4566777666


Q ss_pred             CHHHHHHHHHHHHHHh-cchhh
Q 020640          299 TARAKRKATGILERLK-RTVNL  319 (323)
Q Consensus       299 ~~~~~~~A~~~L~~l~-~~~~~  319 (323)
                      ++..+...+.-+.-+. +|++-
T Consensus       398 d~~~k~~~as~I~~laEkfaP~  419 (866)
T KOG1062|consen  398 DEDFKADIASKIAELAEKFAPD  419 (866)
T ss_pred             cHHHHHHHHHHHHHHHHhcCCc
Confidence            6666544443333333 45553

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=97.52  E-value=0.062  Score=54.56  Aligned_cols=242  Identities=14%  Similarity=0.120  Sum_probs=154.5

Q ss_pred             CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchhhhhhccCC
Q 020640           42 ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPM  121 (323)
Q Consensus        42 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g  121 (323)
                      .++.++.-|+..+..++. +.+.-..+.+ .|.+-.|+.+|.+       .|..+..++.+|+.|+....-...-.+.||
T Consensus      1784 ~~~~iq~LaL~Vi~~~Ta-n~~Cv~~~a~-~~vL~~LL~lLHS-------~PS~R~~vL~vLYAL~S~~~i~keA~~hg~ 1854 (2235)
T KOG1789|consen 1784 KHPKLQILALQVILLATA-NKECVTDLAT-CNVLTTLLTLLHS-------QPSMRARVLDVLYALSSNGQIGKEALEHGG 1854 (2235)
T ss_pred             CCchHHHHHHHHHHHHhc-ccHHHHHHHh-hhHHHHHHHHHhc-------ChHHHHHHHHHHHHHhcCcHHHHHHHhcCc
Confidence            456678888888888885 6667788888 8888888888874       478899999999999988776555566676


Q ss_pred             cHHHHHHHHh-cCCHHHHHHHHHHHHHhcCCCC--chhhh-------------hccCChHHHHHHhhhc--C------Hh
Q 020640          122 VIPLLMDALR-SGTIETRSNAAAALFTLSALDS--NKEVI-------------GKSGALKPLIDLLDEG--H------QS  177 (323)
Q Consensus       122 ~i~~Lv~ll~-~~~~~~~~~a~~~L~~L~~~~~--~~~~i-------------~~~g~i~~Lv~lL~~~--~------~~  177 (323)
                       +..+..++. +.++..+..++..+..|..+.-  .+..|             .+. .-+..+.++...  +      +.
T Consensus      1855 -l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD-~PEAaVH~fE~T~EnPELiWn~~ 1932 (2235)
T KOG1789|consen 1855 -LMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRD-SPEAAVHMFESTSENPELIWNEV 1932 (2235)
T ss_pred             -hhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhc-CHHHHHHHHhccCCCcccccCHh
Confidence             445665554 4567788888888888754321  11100             111 112233332210  0      00


Q ss_pred             HHHHHHHHH--------------------------------------------------------------------HHh
Q 020640          178 AMKDVASAI--------------------------------------------------------------------FNL  189 (323)
Q Consensus       178 ~~~~al~aL--------------------------------------------------------------------~~L  189 (323)
                      .+......+                                                                    ..+
T Consensus      1933 ~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm 2012 (2235)
T KOG1789|consen 1933 TRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELM 2012 (2235)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHh
Confidence            111111111                                                                    111


Q ss_pred             ccC--------------------C-chhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcCHHHHHHHHhcCCHHH
Q 020640          190 CIT--------------------H-ENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSC  246 (323)
Q Consensus       190 ~~~--------------------~-~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~  246 (323)
                      +..                    . .-..++-..|.+|.++..+.-.  ..-..|+++|..|+.+.-+.+++.....+..
T Consensus      2013 ~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lsen~~C~~AMA~l~~i~~ 2092 (2235)
T KOG1789|consen 2013 SRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCLQNTSAPRSAIRVLHELSENQFCCDAMAQLPCIDG 2092 (2235)
T ss_pred             cCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHhcCCcCcHHHHHHHHHHhhccHHHHHHhccccchh
Confidence            111                    1 1111122336666666665532  3447789999999999999999999888888


Q ss_pred             HHHHHhccCChhHHHHHHHHHHHhcccChH-hHHHHHhhcccHHHHHHHhhc
Q 020640          247 MLRIIRESTCDRNKENCIAILHTICLSDRT-KWKAMREEESTHGTISKLAQD  297 (323)
Q Consensus       247 Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~-~~~~~~~~~~~i~~L~~ll~~  297 (323)
                      ++..++- . ..+---|+.+|-.+...+.+ .+.+.+ +.|.++.|++++..
T Consensus      2093 ~m~~mkK-~-~~~~GLA~EalkR~~~r~~~eLVAQ~L-K~gLvpyLL~LLd~ 2141 (2235)
T KOG1789|consen 2093 IMKSMKK-Q-PSLMGLAAEALKRLMKRNTGELVAQML-KCGLVPYLLQLLDS 2141 (2235)
T ss_pred             hHHHHHh-c-chHHHHHHHHHHHHHHHhHHHHHHHHh-ccCcHHHHHHHhcc
Confidence            9988873 2 55666888999888876544 344555 58999999999865

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=97.42  E-value=0.0013  Score=56.40  Aligned_cols=187  Identities=10%  Similarity=0.065  Sum_probs=111.6

Q ss_pred             CCCHHHHHHHHHHHHHhcccc---chhhhhhcc-CCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChH
Q 020640           90 GINPNLQEDVITTLLNLSIHD---NNKKLVAET-PMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALK  165 (323)
Q Consensus        90 ~~~~~~~~~a~~~L~~ls~~~---~~~~~i~~~-~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~  165 (323)
                      +.+.+.+..|+.-|..+....   +....+... ..++..+...+.+....+...|+.++..++..-...-.-.-...+|
T Consensus        18 ~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~   97 (228)
T PF12348_consen   18 ESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLP   97 (228)
T ss_dssp             -SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHH
Confidence            678999999999999887655   233333331 1134456666666677888999999999985433322212244789


Q ss_pred             HHHHHhhhcCHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcC-HHHHHHHHh--
Q 020640          166 PLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTN-HRAVEEIGD--  240 (323)
Q Consensus       166 ~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~-~~~~~~i~~--  240 (323)
                      .|++.+.++...++..|..+|..++........+    .++.+...+.+.  .++..++..+..+... +.....+-.  
T Consensus        98 ~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~  173 (228)
T PF12348_consen   98 PLLKKLGDSKKFIREAANNALDAIIESCSYSPKI----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSA  173 (228)
T ss_dssp             HHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HH
T ss_pred             HHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccc
Confidence            9999999998999999999999998765522222    123445555554  5788888888887663 311111111  


Q ss_pred             --cCCHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHH
Q 020640          241 --LGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAM  281 (323)
Q Consensus       241 --~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~  281 (323)
                        ..+++.+...+.+++ +.+++.|-.+++.+...-++....+
T Consensus       174 ~~~~l~~~l~~~l~D~~-~~VR~~Ar~~~~~l~~~~~~~a~~~  215 (228)
T PF12348_consen  174 FLKQLVKALVKLLSDAD-PEVREAARECLWALYSHFPERAESI  215 (228)
T ss_dssp             HHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHHHHH-HHH---
T ss_pred             hHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHHHHHCCHhhccc
Confidence              235778888888765 9999999999999988776543333

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.41  E-value=0.00042  Score=41.85  Aligned_cols=40  Identities=18%  Similarity=0.223  Sum_probs=35.5

Q ss_pred             hhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhcc
Q 020640           62 PSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSI  108 (323)
Q Consensus        62 ~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~  108 (323)
                      ++++..+.+ .|+++.|+++|.      +++++++..++.+|+|++.
T Consensus         2 ~~~~~~i~~-~g~i~~L~~ll~------~~~~~i~~~a~~aL~nl~~   41 (41)
T smart00185        2 DEQKQAVVD-AGGLPALVELLK------SEDEEVVKEAAWALSNLSS   41 (41)
T ss_pred             cHHHHHHHH-CCCHHHHHHHHc------CCCHHHHHHHHHHHHHHcC
Confidence            347788889 999999999999      6789999999999999973

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=97.41  E-value=0.0066  Score=48.44  Aligned_cols=121  Identities=17%  Similarity=0.189  Sum_probs=94.5

Q ss_pred             hhhhhccCChHHHHHHhhhcC------HhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcC----chHHHHHHH
Q 020640          155 KEVIGKSGALKPLIDLLDEGH------QSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG----VHVDELLAI  224 (323)
Q Consensus       155 ~~~i~~~g~i~~Lv~lL~~~~------~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~----~~~~~a~~~  224 (323)
                      ..++...||+..|++++.++.      .+....++.++..|-.++-.-...++...+..++.+....    .+...|+.+
T Consensus         4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaI   83 (160)
T PF11841_consen    4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAI   83 (160)
T ss_pred             HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHH
Confidence            346677889999999999875      4778889999988877765455666666788888888744    578899999


Q ss_pred             HHHHhcCHHHHHHHH-hcCCHHHHHHHHhccCChhHHHHHHHHHHHhcccChH
Q 020640          225 LAMLSTNHRAVEEIG-DLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRT  276 (323)
Q Consensus       225 L~~l~~~~~~~~~i~-~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~  276 (323)
                      |.++..++...-..+ ++=-++.|+.+++.+ ++.++.+|...+-.|....++
T Consensus        84 LEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~-~~~iq~naiaLinAL~~kA~~  135 (160)
T PF11841_consen   84 LESIVLNSPKLYQLVEQEVTLESLIRHLQVS-NQEIQTNAIALINALFLKADD  135 (160)
T ss_pred             HHHHHhCCHHHHHHHhccCCHHHHHHHHHcC-CHHHHHHHHHHHHHHHhcCCh
Confidence            999999766544444 445699999999965 489999999999888765544

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.32  E-value=0.047  Score=53.69  Aligned_cols=264  Identities=15%  Similarity=0.125  Sum_probs=141.5

Q ss_pred             hhhhHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHh
Q 020640           28 ADRDHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNL  106 (323)
Q Consensus        28 ~~~~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~l  106 (323)
                      +..|-+. .++++. ++-..++-.-...+-+-..+.+.-..+      ...|.+=|+      +.+.-++-.|+.+|.++
T Consensus        68 ahFGqie-clKLias~~f~dKRiGYLaamLlLdE~qdvllLl------tNslknDL~------s~nq~vVglAL~alg~i  134 (866)
T KOG1062|consen   68 AHFGQIE-CLKLIASDNFLDKRIGYLAAMLLLDERQDLLLLL------TNSLKNDLN------SSNQYVVGLALCALGNI  134 (866)
T ss_pred             ccchhhH-HHHHhcCCCchHHHHHHHHHHHHhccchHHHHHH------HHHHHhhcc------CCCeeehHHHHHHhhcc
Confidence            3334443 456665 444445555555555553322211111      223444455      67888899999999999


Q ss_pred             ccccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC-C--------chhhhhc------cCChHHHHHHh
Q 020640          107 SIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALD-S--------NKEVIGK------SGALKPLIDLL  171 (323)
Q Consensus       107 s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~-~--------~~~~i~~------~g~i~~Lv~lL  171 (323)
                      +..+     +...  +.|.+.+++++.++-+++.|+-+...+-.-. +        .+..+.+      .+++..+.+++
T Consensus       135 ~s~E-----mard--lapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c  207 (866)
T KOG1062|consen  135 CSPE-----MARD--LAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEHFVIAFRKLLCEKHHGVLIAGLHLITELC  207 (866)
T ss_pred             CCHH-----HhHH--hhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHHhhHHHHHHHhhcCCceeeeHHHHHHHHH
Confidence            7532     3321  5677888999999999999888888765322 2        2333322      33456666666


Q ss_pred             hhc------CHhHHHHHHHHHHHhccCCc--------hhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcCHH--
Q 020640          172 DEG------HQSAMKDVASAIFNLCITHE--------NKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHR--  233 (323)
Q Consensus       172 ~~~------~~~~~~~al~aL~~L~~~~~--------~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~~~--  233 (323)
                      ..+      ...+...-...|.++....-        ....+++-. +-.++++|..+  +..+....+|+.++.+-+  
T Consensus       208 ~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~-iLrlLriLGq~d~daSd~M~DiLaqvatntdss  286 (866)
T KOG1062|consen  208 KISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIR-ILRLLRILGQNDADASDLMNDILAQVATNTDSS  286 (866)
T ss_pred             hcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHH-HHHHHHHhcCCCccHHHHHHHHHHHHHhccccc
Confidence            652      12344455566777654331        111122210 11234444433  567778888888887421  


Q ss_pred             ---HHHHHHh----------cC-----CHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHh
Q 020640          234 ---AVEEIGD----------LG-----GVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLA  295 (323)
Q Consensus       234 ---~~~~i~~----------~g-----~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll  295 (323)
                         +...+.+          ++     ++..|-+++...+ ..+|.-|+..|..+...++....+      =-..+++++
T Consensus       287 kN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d-~NirYvaLn~L~r~V~~d~~avqr------Hr~tIleCL  359 (866)
T KOG1062|consen  287 KNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRD-NNIRYVALNMLLRVVQQDPTAVQR------HRSTILECL  359 (866)
T ss_pred             ccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCc-cceeeeehhhHHhhhcCCcHHHHH------HHHHHHHHh
Confidence               1111111          11     2333334444222 344444444444444444332111      123567888


Q ss_pred             hcCCHHHHHHHHHHHHHHhcchhh
Q 020640          296 QDGTARAKRKATGILERLKRTVNL  319 (323)
Q Consensus       296 ~~~~~~~~~~A~~~L~~l~~~~~~  319 (323)
                      ++.++.++++|..++..|.....+
T Consensus       360 ~DpD~SIkrralELs~~lvn~~Nv  383 (866)
T KOG1062|consen  360 KDPDVSIKRRALELSYALVNESNV  383 (866)
T ss_pred             cCCcHHHHHHHHHHHHHHhccccH
Confidence            989999999999998888765443

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=97.29  E-value=0.031  Score=50.80  Aligned_cols=189  Identities=18%  Similarity=0.222  Sum_probs=123.9

Q ss_pred             CCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC
Q 020640           73 DAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALD  152 (323)
Q Consensus        73 g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~  152 (323)
                      ..++.+..++.      +++..++..++..+..+..           .-+++.+..++.+.++.++..++.+|..+-   
T Consensus        43 ~~~~~~~~~l~------~~~~~vr~~aa~~l~~~~~-----------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~---  102 (335)
T COG1413          43 EAADELLKLLE------DEDLLVRLSAAVALGELGS-----------EEAVPLLRELLSDEDPRVRDAAADALGELG---  102 (335)
T ss_pred             hhHHHHHHHHc------CCCHHHHHHHHHHHhhhch-----------HHHHHHHHHHhcCCCHHHHHHHHHHHHccC---
Confidence            46788888888      6688899988888655532           226888999999999999999999776663   


Q ss_pred             CchhhhhccCChHHHHHHhh-hcCHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcCchHHHHHHHHHHHhcC
Q 020640          153 SNKEVIGKSGALKPLIDLLD-EGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDGVHVDELLAILAMLSTN  231 (323)
Q Consensus       153 ~~~~~i~~~g~i~~Lv~lL~-~~~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~a~~~L~~l~~~  231 (323)
                             ....++.|++++. +++..++..+..+|..+-.          ..++..++..+++..... +...+  ....
T Consensus       103 -------~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~----------~~a~~~l~~~l~~~~~~~-a~~~~--~~~~  162 (335)
T COG1413         103 -------DPEAVPPLVELLENDENEGVRAAAARALGKLGD----------ERALDPLLEALQDEDSGS-AAAAL--DAAL  162 (335)
T ss_pred             -------ChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCc----------hhhhHHHHHHhccchhhh-hhhhc--cchH
Confidence                   2347999999999 5889999999999987622          223677888877653222 11111  0000


Q ss_pred             HHHHHH----HHh---cCCHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHH
Q 020640          232 HRAVEE----IGD---LGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKR  304 (323)
Q Consensus       232 ~~~~~~----i~~---~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~  304 (323)
                      -..|..    +..   .-.++.+..++.+.. ..++..|+.+|..+.....          .....+...+.+.+..++.
T Consensus       163 ~~~r~~a~~~l~~~~~~~~~~~l~~~l~~~~-~~vr~~Aa~aL~~~~~~~~----------~~~~~l~~~~~~~~~~vr~  231 (335)
T COG1413         163 LDVRAAAAEALGELGDPEAIPLLIELLEDED-ADVRRAAASALGQLGSENV----------EAADLLVKALSDESLEVRK  231 (335)
T ss_pred             HHHHHHHHHHHHHcCChhhhHHHHHHHhCch-HHHHHHHHHHHHHhhcchh----------hHHHHHHHHhcCCCHHHHH
Confidence            012221    122   235788888888654 7889999999988877651          2334444555555555555


Q ss_pred             HHHHHHHH
Q 020640          305 KATGILER  312 (323)
Q Consensus       305 ~A~~~L~~  312 (323)
                      ++...|..
T Consensus       232 ~~~~~l~~  239 (335)
T COG1413         232 AALLALGE  239 (335)
T ss_pred             HHHHHhcc
Confidence            55544433

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=97.28  E-value=0.088  Score=50.13  Aligned_cols=246  Identities=13%  Similarity=0.158  Sum_probs=125.3

Q ss_pred             chhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchhhhhhccCCcH
Q 020640           44 LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVI  123 (323)
Q Consensus        44 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i  123 (323)
                      ..+..++++.+..++..+.  -..+.+  ..+..|-.+|+      ++....+-.|..+|..|+.....+...+..    
T Consensus       278 emV~lE~Ar~v~~~~~~nv--~~~~~~--~~vs~L~~fL~------s~rv~~rFsA~Riln~lam~~P~kv~vcN~----  343 (898)
T COG5240         278 EMVFLEAARAVCALSEENV--GSQFVD--QTVSSLRTFLK------STRVVLRFSAMRILNQLAMKYPQKVSVCNK----  343 (898)
T ss_pred             hhhhHHHHHHHHHHHHhcc--CHHHHH--HHHHHHHHHHh------cchHHHHHHHHHHHHHHHhhCCceeeecCh----
Confidence            3456677777777665431  223333  34666666777      667888888999998887644433333221    


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHHhccCCchhHH-----
Q 020640          124 PLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKAR-----  198 (323)
Q Consensus       124 ~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~-----  198 (323)
                       -+-.++.+.+..+...|+.+|..= ..+++...+     +..+..++++=+...+.-+..+++.||...+.+..     
T Consensus       344 -evEsLIsd~Nr~IstyAITtLLKT-Gt~e~idrL-----v~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~l~F  416 (898)
T COG5240         344 -EVESLISDENRTISTYAITTLLKT-GTEETIDRL-----VNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSYLDF  416 (898)
T ss_pred             -hHHHHhhcccccchHHHHHHHHHc-CchhhHHHH-----HHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHHHHH
Confidence             122333333333333333332221 112211111     11222222222333444444455555544433221     


Q ss_pred             ----HHhhCch-------HHHHHHhhc-CchHHHHHHHHHHHhcC---HHHHHHHH----hcC--------CHHHHHHHH
Q 020640          199 ----AVRDGGV-------SVILKKIMD-GVHVDELLAILAMLSTN---HRAVEEIG----DLG--------GVSCMLRII  251 (323)
Q Consensus       199 ----i~~~g~v-------~~Lv~ll~~-~~~~~~a~~~L~~l~~~---~~~~~~i~----~~g--------~i~~Lv~ll  251 (323)
                          +.+.|+.       ..+.+++.. ++.++.|+..|+..-.+   ++....|.    ++|        .+.++..-+
T Consensus       417 L~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~  496 (898)
T COG5240         417 LGSSLLQEGGLEFKKYMVDAISDAMENDPDSKERALEVLCTFIEDCEYHQITVRILGILGREGPRAKTPGKYVRHIYNRL  496 (898)
T ss_pred             HHHHHHhcccchHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCCcchHHHHHHHHH
Confidence                1123333       233333332 25667666666655442   33333332    233        244444333


Q ss_pred             hccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 020640          252 RESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKR  315 (323)
Q Consensus       252 ~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~  315 (323)
                      --.+ ..++.+|+.+|...+.+-.+   .. ....+...|..++.+.++++++.|..+|+++..
T Consensus       497 iLEN-~ivRsaAv~aLskf~ln~~d---~~-~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~~  555 (898)
T COG5240         497 ILEN-NIVRSAAVQALSKFALNISD---VV-SPQSVENALKRCLNDQDDEVRDRASFLLRNMRL  555 (898)
T ss_pred             HHhh-hHHHHHHHHHHHHhccCccc---cc-cHHHHHHHHHHHhhcccHHHHHHHHHHHHhhhh
Confidence            2233 77889999999877765533   11 123455666777787899999999999999863

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=97.27  E-value=0.0021  Score=47.39  Aligned_cols=66  Identities=17%  Similarity=0.290  Sum_probs=55.2

Q ss_pred             hHHHHHHHHHHHhc-CHHHHHHHHhcCCHHHHHHHHhc-cCChhHHHHHHHHHHHhcccChHhHHHHHh
Q 020640          217 HVDELLAILAMLST-NHRAVEEIGDLGGVSCMLRIIRE-STCDRNKENCIAILHTICLSDRTKWKAMRE  283 (323)
Q Consensus       217 ~~~~a~~~L~~l~~-~~~~~~~i~~~g~i~~Lv~ll~~-~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~  283 (323)
                      .+...+++++|++. ++.+++.+.+.|+++.++....- .++|.+++.|..++.+|+..+++. ++++.
T Consensus         2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eN-Q~~I~   69 (102)
T PF09759_consen    2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPEN-QEFIA   69 (102)
T ss_pred             cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHH-HHHHH
Confidence            46678899999999 58999999999999999987753 446889999999999999999875 34443

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=97.27  E-value=0.062  Score=52.55  Aligned_cols=150  Identities=13%  Similarity=0.121  Sum_probs=98.8

Q ss_pred             HHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhH---HHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhc
Q 020640           32 HFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFR---ALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLS  107 (323)
Q Consensus        32 ~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~---~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls  107 (323)
                      .+...+..|+ .++.+|.+|+..+..++.--. .+   +.+.. .|.  .|.+.|.      .+++++.-..+.++..+.
T Consensus       800 i~stiL~rLnnksa~vRqqaadlis~la~Vlk-tc~ee~~m~~-lGv--vLyEylg------eeypEvLgsILgAikaI~  869 (1172)
T KOG0213|consen  800 ICSTILWRLNNKSAKVRQQAADLISSLAKVLK-TCGEEKLMGH-LGV--VLYEYLG------EEYPEVLGSILGAIKAIV  869 (1172)
T ss_pred             HHHHHHHHhcCCChhHHHHHHHHHHHHHHHHH-hccHHHHHHH-hhH--HHHHhcC------cccHHHHHHHHHHHHHHH
Confidence            3444555564 568889999988888774211 11   22333 443  2556666      778998888777777664


Q ss_pred             cccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhc-cCChHHHHHHhhhcCHhHHHHHHHHH
Q 020640          108 IHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGK-SGALKPLIDLLDEGHQSAMKDVASAI  186 (323)
Q Consensus       108 ~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~al~aL  186 (323)
                      ..-.--+..--..+++|.|.-+|++.+..+++.++..+..++..........+ -.+--.|+++|++-+.+++.+|..++
T Consensus       870 nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTf  949 (1172)
T KOG0213|consen  870 NVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTF  949 (1172)
T ss_pred             HhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            32221111111124799999999999999999999999999865443222222 23445788889988889999998888


Q ss_pred             HHhcc
Q 020640          187 FNLCI  191 (323)
Q Consensus       187 ~~L~~  191 (323)
                      ..++.
T Consensus       950 G~Iak  954 (1172)
T KOG0213|consen  950 GYIAK  954 (1172)
T ss_pred             hHHHH
Confidence            77654

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=97.22  E-value=0.001  Score=43.26  Aligned_cols=55  Identities=15%  Similarity=0.056  Sum_probs=47.5

Q ss_pred             hhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 020640          257 DRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERL  313 (323)
Q Consensus       257 ~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l  313 (323)
                      +.++..|+++|.+++...++..+..+  ...++.|..++.++++.++..|+++|.+|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~~--~~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPYL--PELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHHH--HHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHHH--HHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            36899999999999988877666654  57999999999999999999999999865

...

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=97.21  E-value=0.0052  Score=51.06  Aligned_cols=120  Identities=11%  Similarity=0.066  Sum_probs=87.5

Q ss_pred             cCHhHHHHHHHHHHHhccCCchhHHHHhh----------------CchHHHHHHhhcC--------chHHHHHHHHHHHh
Q 020640          174 GHQSAMKDVASAIFNLCITHENKARAVRD----------------GGVSVILKKIMDG--------VHVDELLAILAMLS  229 (323)
Q Consensus       174 ~~~~~~~~al~aL~~L~~~~~~~~~i~~~----------------g~v~~Lv~ll~~~--------~~~~~a~~~L~~l~  229 (323)
                      ++......++..|.||+..++.+..+++.                .++..|+..+..+        ........+|+|++
T Consensus         7 ~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS   86 (192)
T PF04063_consen    7 PKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLS   86 (192)
T ss_pred             CCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhc
Confidence            34456777899999999998888766543                2567788877662        34677899999999


Q ss_pred             cCHHHHHHHHhc--CC--HHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhc--ccHHHHHHHh
Q 020640          230 TNHRAVEEIGDL--GG--VSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEE--STHGTISKLA  295 (323)
Q Consensus       230 ~~~~~~~~i~~~--g~--i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~--~~i~~L~~ll  295 (323)
                      ..+++|+.|.+.  +.  ++.|+.++... +..-+..+++++.|+|.+.+.+ ..++.+.  ++++.|+--+
T Consensus        87 ~~~~gR~~~l~~~~~~~~l~kLl~ft~~~-s~iRR~Gva~~IrNccFd~~~H-~~LL~~~~~~iLp~LLlPL  156 (192)
T PF04063_consen   87 QLPEGRQFFLDPQRYDGPLQKLLPFTEHK-SVIRRGGVAGTIRNCCFDTDSH-EWLLSDDEVDILPYLLLPL  156 (192)
T ss_pred             CCHHHHHHHhCchhhhhHHHHHHHHhccC-cHHHHHHHHHHHHHhhccHhHH-HHhcCchhhhhHHHHHhhc
Confidence            999999999865  45  78888888755 4767888999999999988653 4555422  4444444433

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.20  E-value=0.0099  Score=57.98  Aligned_cols=144  Identities=17%  Similarity=0.100  Sum_probs=84.7

Q ss_pred             HHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhcccc
Q 020640           32 HFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHD  110 (323)
Q Consensus        32 ~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~  110 (323)
                      ....+.+.++ +++.+|..|+.+..++-..++   ....+ .|.++.|-+++.      ++++.+..+|+.+|..+...+
T Consensus       122 ~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~---~~~~~-~gl~~~L~~ll~------D~~p~VVAnAlaaL~eI~e~~  191 (734)
T KOG1061|consen  122 LCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDP---DLVED-SGLVDALKDLLS------DSNPMVVANALAALSEIHESH  191 (734)
T ss_pred             HHHHHHHhccCCChhHHHHHHHHHHHhhcCCh---hhccc-cchhHHHHHHhc------CCCchHHHHHHHHHHHHHHhC
Confidence            3445666664 568889999999988886543   56677 899999999999      789999999999999886554


Q ss_pred             chhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHHh
Q 020640          111 NNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNL  189 (323)
Q Consensus       111 ~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L  189 (323)
                      .+.....-   ..+.+-.++..-+....+.-+.+|-.++.+..... .-....++.+...|...+..+...+...+.++
T Consensus       192 ~~~~~~~l---~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~-~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~  266 (734)
T KOG1061|consen  192 PSVNLLEL---NPQLINKLLEALNECTEWGQIFILDCLAEYVPKDS-REAEDICERLTPRLQHANSAVVLSAVKVILQL  266 (734)
T ss_pred             CCCCcccc---cHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCc-hhHHHHHHHhhhhhccCCcceEeehHHHHHHH
Confidence            43111111   12233334444455555566666666654332211 00011333444444444444444444444443

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=97.19  E-value=0.041  Score=52.58  Aligned_cols=245  Identities=10%  Similarity=0.094  Sum_probs=144.8

Q ss_pred             hhhhhHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHH
Q 020640           27 EADRDHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLN  105 (323)
Q Consensus        27 ~~~~~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~  105 (323)
                      |.....+|.++.... ....+|..|..+..-+...-..+.   +  .-.++.++.-+.      .........++..+..
T Consensus       212 Pyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~a---V--K~llpsll~~l~------~~kWrtK~aslellg~  280 (569)
T KOG1242|consen  212 PYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYA---V--KLLLPSLLGSLL------EAKWRTKMASLELLGA  280 (569)
T ss_pred             chHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcch---h--hHhhhhhHHHHH------HHhhhhHHHHHHHHHH
Confidence            333345555555553 335666665555555543322211   0  123444444343      2245778889999999


Q ss_pred             hccccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHH
Q 020640          106 LSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASA  185 (323)
Q Consensus       106 ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~a  185 (323)
                      ++...+.+-..... .++|.+.+.|-+..+++++.+..++..++..-+|... .  -.+|.|++.+.+++..+. .++..
T Consensus       281 m~~~ap~qLs~~lp-~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI-~--~~ip~Lld~l~dp~~~~~-e~~~~  355 (569)
T KOG1242|consen  281 MADCAPKQLSLCLP-DLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDI-Q--KIIPTLLDALADPSCYTP-ECLDS  355 (569)
T ss_pred             HHHhchHHHHHHHh-HhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHH-H--HHHHHHHHHhcCcccchH-HHHHh
Confidence            98877766666664 4899999999999999999999999999876666552 1  257777777777543332 34443


Q ss_pred             HHHhccCCchhHHHHhhCchHHHHHHhh----cC--chHHHHHHHHHHHhcCHHHHHHHHh--cCCHHHHHHHHhccCCh
Q 020640          186 IFNLCITHENKARAVRDGGVSVILKKIM----DG--VHVDELLAILAMLSTNHRAVEEIGD--LGGVSCMLRIIRESTCD  257 (323)
Q Consensus       186 L~~L~~~~~~~~~i~~~g~v~~Lv~ll~----~~--~~~~~a~~~L~~l~~~~~~~~~i~~--~g~i~~Lv~ll~~~~~~  257 (323)
                      |..=+.-..     ++.-.+..++.+++    +.  ..++.++.+..|||+-=+....+..  -..++.|-..+.+. .+
T Consensus       356 L~~ttFV~~-----V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~-~P  429 (569)
T KOG1242|consen  356 LGATTFVAE-----VDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDA-VP  429 (569)
T ss_pred             hcceeeeee-----ecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCC-Ch
Confidence            332222111     11123334444444    33  5788999999999984222222221  12355555555544 38


Q ss_pred             hHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcC
Q 020640          258 RNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDG  298 (323)
Q Consensus       258 ~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~  298 (323)
                      .++.-++++|..+-.+-.+.  .+   .+.++.|.+.+.+.
T Consensus       430 EvR~vaarAL~~l~e~~g~~--~f---~d~~p~l~e~~~~~  465 (569)
T KOG1242|consen  430 EVRAVAARALGALLERLGEV--SF---DDLIPELSETLTSE  465 (569)
T ss_pred             hHHHHHHHHHHHHHHHHHhh--cc---cccccHHHHhhccc
Confidence            89999999998776654221  11   45666666665433

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.18  E-value=0.062  Score=52.20  Aligned_cols=236  Identities=9%  Similarity=0.092  Sum_probs=133.3

Q ss_pred             chhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccc--hhhhhhccCC
Q 020640           44 LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDN--NKKLVAETPM  121 (323)
Q Consensus        44 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~--~~~~i~~~~g  121 (323)
                      ..+|.+|+.+|..+-+.+++..   .. .+-.+.++.+|.      +.+-.+...+...+..++...+  .+..+..   
T Consensus       162 ~~vkqkaALclL~L~r~spDl~---~~-~~W~~riv~LL~------D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~---  228 (938)
T KOG1077|consen  162 DYVKQKAALCLLRLFRKSPDLV---NP-GEWAQRIVHLLD------DQHMGVVTAATSLIEALVKKNPESYKTCLPL---  228 (938)
T ss_pred             HHHHHHHHHHHHHHHhcCcccc---Ch-hhHHHHHHHHhC------ccccceeeehHHHHHHHHHcCCHHHhhhHHH---
Confidence            4456666666666666666532   11 345677778777      4556666667777766665443  2222221   


Q ss_pred             cHHHHHHHHhc-------------CCHHHHHHHHHHHHHhcCCCC--chhhhhccCChHHHHHHhhhc--CHh-----HH
Q 020640          122 VIPLLMDALRS-------------GTIETRSNAAAALFTLSALDS--NKEVIGKSGALKPLIDLLDEG--HQS-----AM  179 (323)
Q Consensus       122 ~i~~Lv~ll~~-------------~~~~~~~~a~~~L~~L~~~~~--~~~~i~~~g~i~~Lv~lL~~~--~~~-----~~  179 (323)
                      ++..|.++...             +.|=.+...+++|.+.-..++  .+..+.+  +++.++...+++  +..     ++
T Consensus       229 avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~e--vl~~iLnk~~~~~~~k~vq~~na~  306 (938)
T KOG1077|consen  229 AVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLNE--VLERILNKAQEPPKSKKVQHSNAK  306 (938)
T ss_pred             HHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHHH--HHHHHHhccccCccccchHhhhhH
Confidence            23333333321             134455566666666632222  2333322  344444444421  111     11


Q ss_pred             HHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHhccCCh
Q 020640          180 KDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCD  257 (323)
Q Consensus       180 ~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~  257 (323)
                      ...+=-..+|+.+-+.-..++.. ++..|-.+|.+.  +++.-++..++.|++++...+.+..+  .+.++..|+...+-
T Consensus       307 naVLFeaI~l~~h~D~e~~ll~~-~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h--~d~Ii~sLkterDv  383 (938)
T KOG1077|consen  307 NAVLFEAISLAIHLDSEPELLSR-AVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKH--QDTIINSLKTERDV  383 (938)
T ss_pred             HHHHHHHHHHHHHcCCcHHHHHH-HHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHH--HHHHHHHhccccch
Confidence            11111123344433333333222 566788888766  68999999999999998777777766  68888888855557


Q ss_pred             hHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHH
Q 020640          258 RNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRK  305 (323)
Q Consensus       258 ~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~  305 (323)
                      .+++.|+..|+.+|..+.  .+.++      .-|++.+.+-+..+++.
T Consensus       384 SirrravDLLY~mcD~~N--ak~IV------~elLqYL~tAd~siree  423 (938)
T KOG1077|consen  384 SIRRRAVDLLYAMCDVSN--AKQIV------AELLQYLETADYSIREE  423 (938)
T ss_pred             HHHHHHHHHHHHHhchhh--HHHHH------HHHHHHHhhcchHHHHH
Confidence            799999999999998763  34554      33455554455444443

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=97.15  E-value=0.11  Score=47.24  Aligned_cols=184  Identities=21%  Similarity=0.262  Sum_probs=121.4

Q ss_pred             hHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccc
Q 020640           31 DHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIH  109 (323)
Q Consensus        31 ~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~  109 (323)
                      ..++.+++.+. .+..+|..|...+..+.           . .-.++.+.++|.      +.++.++..|+.+|..+-. 
T Consensus        43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~-----------~-~~av~~l~~~l~------d~~~~vr~~a~~aLg~~~~-  103 (335)
T COG1413          43 EAADELLKLLEDEDLLVRLSAAVALGELG-----------S-EEAVPLLRELLS------DEDPRVRDAAADALGELGD-  103 (335)
T ss_pred             hhHHHHHHHHcCCCHHHHHHHHHHHhhhc-----------h-HHHHHHHHHHhc------CCCHHHHHHHHHHHHccCC-
Confidence            46777888885 45777887777744433           1 446888999999      7788999999998776632 


Q ss_pred             cchhhhhhccCCcHHHHHHHHh-cCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHh-----------
Q 020640          110 DNNKKLVAETPMVIPLLMDALR-SGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQS-----------  177 (323)
Q Consensus       110 ~~~~~~i~~~~g~i~~Lv~ll~-~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~-----------  177 (323)
                                ...++.++.++. +++..++..++++|..+-..          ..+.+++..+.+....           
T Consensus       104 ----------~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~----------~a~~~l~~~l~~~~~~~a~~~~~~~~~  163 (335)
T COG1413         104 ----------PEAVPPLVELLENDENEGVRAAAARALGKLGDE----------RALDPLLEALQDEDSGSAAAALDAALL  163 (335)
T ss_pred             ----------hhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCch----------hhhHHHHHHhccchhhhhhhhccchHH
Confidence                      235788889888 58999999999999988432          2478888888876532           


Q ss_pred             -HHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHhcc
Q 020640          178 -AMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRES  254 (323)
Q Consensus       178 -~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~~  254 (323)
                       ++..+..+|..+          .....++.+..++.+.  .++..+..+|..+....        ..+...+...+.+.
T Consensus       164 ~~r~~a~~~l~~~----------~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~--------~~~~~~l~~~~~~~  225 (335)
T COG1413         164 DVRAAAAEALGEL----------GDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN--------VEAADLLVKALSDE  225 (335)
T ss_pred             HHHHHHHHHHHHc----------CChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch--------hhHHHHHHHHhcCC
Confidence             233333333222          1223667778888766  57888888777777654        22345555555543


Q ss_pred             CChhHHHHHHHHHHHhcc
Q 020640          255 TCDRNKENCIAILHTICL  272 (323)
Q Consensus       255 ~~~~~~~~a~~~L~~L~~  272 (323)
                      + ..++..++.+|..+-.
T Consensus       226 ~-~~vr~~~~~~l~~~~~  242 (335)
T COG1413         226 S-LEVRKAALLALGEIGD  242 (335)
T ss_pred             C-HHHHHHHHHHhcccCc
Confidence            3 5566666665555443

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=97.14  E-value=0.0039  Score=58.38  Aligned_cols=260  Identities=13%  Similarity=0.076  Sum_probs=174.0

Q ss_pred             HHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccc-hhhhhhccCCcHHH
Q 020640           47 QTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDN-NKKLVAETPMVIPL  125 (323)
Q Consensus        47 ~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~-~~~~i~~~~g~i~~  125 (323)
                      -..++..|..+++.-.-.|.-+.+ ..+.+.|+++|.      .++..+..-++..+.|+-..-+ -+..+... |++..
T Consensus       406 ~~a~~l~LkS~SrSV~~LRTgL~d-~~I~elLi~~Ls------~Peimi~~~~t~~icn~vv~fsnL~~~fL~~-~iIdv  477 (743)
T COG5369         406 FVAIVLFLKSMSRSVTFLRTGLLD-YPIVELLIDALS------NPEIMIEFPDTIDICNKVVPFSNLGAGFLEK-SIIDV  477 (743)
T ss_pred             HHHHHHHHHHhhHHHHHHHhhccc-cchHHHHHHHhc------CccceeeccchhhhhheeeeccchHHHHHHh-hHHHH
Confidence            345777788888766667778888 889999999999      4444555556777777765555 46777775 58999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHhcCCCCc--hhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHHhccCCc-h---hHHH
Q 020640          126 LMDALRSGTIETRSNAAAALFTLSALDSN--KEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHE-N---KARA  199 (323)
Q Consensus       126 Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~--~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~-~---~~~i  199 (323)
                      |+.++.+.+...+....|.++.+-.+.++  +-+....-+++.++.+..++.-.++..++..|+|++.+.. |   +...
T Consensus       478 l~~~v~sKDdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~  557 (743)
T COG5369         478 LVNLVMSKDDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVF  557 (743)
T ss_pred             HHHHhhcchhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeE
Confidence            99999988899999999999999765543  4455667789999999999999999999999999976432 1   1111


Q ss_pred             HhhC----chHHHHHHhhcC--chHHHHHHHHHHHhcCHHHHHHHHh--cCCHHHHHHHHhc---------cC-------
Q 020640          200 VRDG----GVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGD--LGGVSCMLRIIRE---------ST-------  255 (323)
Q Consensus       200 ~~~g----~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~~~~~~~i~~--~g~i~~Lv~ll~~---------~~-------  255 (323)
                      +..-    ....|++.+...  -.....+.+|.+++.+++..+.++.  +..+..+-.+|..         ++       
T Consensus       558 ~K~~p~~ylfk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~  637 (743)
T COG5369         558 IKATPRRYLFKRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLL  637 (743)
T ss_pred             EecChHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccC
Confidence            1111    223445555443  2345567888888876655555443  3444444444321         00       


Q ss_pred             ------------------------------------ChhHHHHHHHHHHHhcccCh--------HhHHHHHhhcccHHHH
Q 020640          256 ------------------------------------CDRNKENCIAILHTICLSDR--------TKWKAMREEESTHGTI  291 (323)
Q Consensus       256 ------------------------------------~~~~~~~a~~~L~~L~~~~~--------~~~~~~~~~~~~i~~L  291 (323)
                                                          +++.-.+..|...++.....        -.+..++...|+-+.|
T Consensus       638 p~s~~~v~l~e~~d~f~r~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~e~l  717 (743)
T COG5369         638 PISYTIVNLSENSDKFKRLVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIREWL  717 (743)
T ss_pred             ccceeeecccccccccccceecCCCccccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHHHHH
Confidence                                                01111223333333332211        1344566677888888


Q ss_pred             HHHhhcCCHHHHHHHHHHHHHHh
Q 020640          292 SKLAQDGTARAKRKATGILERLK  314 (323)
Q Consensus       292 ~~ll~~~~~~~~~~A~~~L~~l~  314 (323)
                      .++..++++.+++++-.+|.++.
T Consensus       718 ~k~q~~~Sl~vrek~~taL~~l~  740 (743)
T COG5369         718 VKIQAKDSLIVREKIGTALENLR  740 (743)
T ss_pred             HHHhccCcHHHHHHHHHHHHhhh
Confidence            88888889999999999998864

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=97.11  E-value=0.2  Score=50.59  Aligned_cols=242  Identities=15%  Similarity=0.136  Sum_probs=157.6

Q ss_pred             HHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchhhhhhccCCcHHHHHHHHh----cCC----HHHH
Q 020640           67 LFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALR----SGT----IETR  138 (323)
Q Consensus        67 ~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~----~~~----~~~~  138 (323)
                      .+.+ .||+..+++++..-.. .+....+....+.+|..+++...||+.+.+.+ .++.|+..+.    .+.    .++.
T Consensus       112 v~~~-~gGL~~ll~~l~~~~~-~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~-al~~LL~~L~~~l~~~~~~~~~~i~  188 (802)
T PF13764_consen  112 VLAE-CGGLEVLLSRLDSIRD-FSRGRELLQVLLKLLRYCCKVKVNRRALLELN-ALNRLLSVLNRALQANQNSSQAEIA  188 (802)
T ss_pred             Hhhc-CCCHHHHHHHHHhhcc-ccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcC-CHHHHHHHHHHHHhCccccccchHH
Confidence            3455 8999999999974321 03456788888999999999999999999965 5998888774    333    6777


Q ss_pred             HHHHHHHHHhcCCCCc---hh--hhhcc--------CChHHHHHHhhhc----CHhHHHHHHHHHHHhccCCchhHHHHh
Q 020640          139 SNAAAALFTLSALDSN---KE--VIGKS--------GALKPLIDLLDEG----HQSAMKDVASAIFNLCITHENKARAVR  201 (323)
Q Consensus       139 ~~a~~~L~~L~~~~~~---~~--~i~~~--------g~i~~Lv~lL~~~----~~~~~~~al~aL~~L~~~~~~~~~i~~  201 (323)
                      +....++..|......   ..  .....        .-+..+++.+.++    ++.+....++.|-.|+.+++.+...+-
T Consensus       189 E~LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv  268 (802)
T PF13764_consen  189 EQLLEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALV  268 (802)
T ss_pred             HHHHHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHH
Confidence            7777777776432211   00  00111        1255556655543    688999999999999999876665422


Q ss_pred             hCchHHHHHHhhc-----C--chHHHHHHHHHHHhcC-------HHHHHHHHhcCCHHHHHHHHhcc-------CChhHH
Q 020640          202 DGGVSVILKKIMD-----G--VHVDELLAILAMLSTN-------HRAVEEIGDLGGVSCMLRIIRES-------TCDRNK  260 (323)
Q Consensus       202 ~g~v~~Lv~ll~~-----~--~~~~~a~~~L~~l~~~-------~~~~~~i~~~g~i~~Lv~ll~~~-------~~~~~~  260 (323)
                      .    ..-..++-     .  .--...+..++.++..       ...|+.+++.|+++..++++...       +++.++
T Consensus       269 ~----~F~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk  344 (802)
T PF13764_consen  269 E----HFKPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWK  344 (802)
T ss_pred             H----HHHHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHH
Confidence            1    22222221     1  1112335555555542       47888999999999999888652       124444


Q ss_pred             H--------HHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcC-CHHHHHHHHHHHHHHhcch
Q 020640          261 E--------NCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDG-TARAKRKATGILERLKRTV  317 (323)
Q Consensus       261 ~--------~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~~A~~~L~~l~~~~  317 (323)
                      +        .++..|.-|+..++.. +.++ ..++++.+..+=+.. +..+...|-.+|..|+...
T Consensus       345 ~~l~~psLp~iL~lL~GLa~gh~~t-Q~~~-~~~~l~~lH~LEqvss~~~IGslAEnlLeal~~~~  408 (802)
T PF13764_consen  345 EFLSRPSLPYILRLLRGLARGHEPT-QLLI-AEQLLPLLHRLEQVSSEEHIGSLAENLLEALAENE  408 (802)
T ss_pred             HHhcCCcHHHHHHHHHHHHhcCHHH-HHHH-HhhHHHHHHHhhcCCCccchHHHHHHHHHHHhcCh
Confidence            4        4788888888887653 3443 456775555554433 6788888888888888754

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=97.10  E-value=0.048  Score=52.09  Aligned_cols=169  Identities=13%  Similarity=0.116  Sum_probs=115.7

Q ss_pred             HHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcC
Q 020640          136 ETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG  215 (323)
Q Consensus       136 ~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~  215 (323)
                      ..+..++..+..++...+..-......++|.+.+.|.+..+++++.+..+|..++..-+|.. | + -.+|.|++.+.++
T Consensus       269 rtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~d-I-~-~~ip~Lld~l~dp  345 (569)
T KOG1242|consen  269 RTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPD-I-Q-KIIPTLLDALADP  345 (569)
T ss_pred             hhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHH-H-H-HHHHHHHHHhcCc
Confidence            56677888888887766666666668899999999999999999999999999988666655 2 2 2678888888877


Q ss_pred             c-hHHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHhcc---CChhHHHHHHHHHHHhcccC--hHhHHHHHhhcccHH
Q 020640          216 V-HVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRES---TCDRNKENCIAILHTICLSD--RTKWKAMREEESTHG  289 (323)
Q Consensus       216 ~-~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~~---~~~~~~~~a~~~L~~L~~~~--~~~~~~~~~~~~~i~  289 (323)
                      . -...++..|..-..-.     .++.-.+..++.+++.+   .+..+++.++.++.|+|.--  +.....++.  ..++
T Consensus       346 ~~~~~e~~~~L~~ttFV~-----~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~--~Llp  418 (569)
T KOG1242|consen  346 SCYTPECLDSLGATTFVA-----EVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLP--SLLP  418 (569)
T ss_pred             ccchHHHHHhhcceeeee-----eecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHH--HHhh
Confidence            4 4555555444332211     11223344444444432   23668899999999999865  333334432  4555


Q ss_pred             HHHHHhhcCCHHHHHHHHHHHHHHh
Q 020640          290 TISKLAQDGTARAKRKATGILERLK  314 (323)
Q Consensus       290 ~L~~ll~~~~~~~~~~A~~~L~~l~  314 (323)
                      .|-+.+....|+++.-|.++|..+-
T Consensus       419 ~lk~~~~d~~PEvR~vaarAL~~l~  443 (569)
T KOG1242|consen  419 GLKENLDDAVPEVRAVAARALGALL  443 (569)
T ss_pred             HHHHHhcCCChhHHHHHHHHHHHHH
Confidence            5555566567999999999985443

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=97.09  E-value=0.014  Score=46.62  Aligned_cols=121  Identities=15%  Similarity=0.150  Sum_probs=91.7

Q ss_pred             hHHHHhhCchHHHHHHhhcCc--------hHHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHhccC-ChhHHHHHHHH
Q 020640          196 KARAVRDGGVSVILKKIMDGV--------HVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIREST-CDRNKENCIAI  266 (323)
Q Consensus       196 ~~~i~~~g~v~~Lv~ll~~~~--------~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~~~-~~~~~~~a~~~  266 (323)
                      ..++++.||+..|++++.++.        ....++.++.+|..+...-=...+...|..++.++.... +..+.+.|..+
T Consensus         4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaI   83 (160)
T PF11841_consen    4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAI   83 (160)
T ss_pred             HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHH
Confidence            456788899999999998763        233456666666654322223444456888888887533 47789999999


Q ss_pred             HHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhcch
Q 020640          267 LHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTV  317 (323)
Q Consensus       267 L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~  317 (323)
                      |-++..+++.. ...+.+.=-++.|+..++.++++++.+|..++..|...+
T Consensus        84 LEs~Vl~S~~l-y~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA  133 (160)
T PF11841_consen   84 LESIVLNSPKL-YQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKA  133 (160)
T ss_pred             HHHHHhCCHHH-HHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Confidence            99999998764 466667888999999999999999999999998887533

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=97.07  E-value=0.00076  Score=43.88  Aligned_cols=55  Identities=29%  Similarity=0.106  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHHh
Q 020640          135 IETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNL  189 (323)
Q Consensus       135 ~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L  189 (323)
                      +.++..++++|.+++........-....+++.|+.+|.++++.++..|+++|.+|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            4678999999999876555444444467899999999999999999999999875

...

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=97.05  E-value=0.0032  Score=46.41  Aligned_cols=68  Identities=22%  Similarity=0.255  Sum_probs=58.3

Q ss_pred             hHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccc-hhhhhhc
Q 020640           46 DQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDN-NKKLVAE  118 (323)
Q Consensus        46 ~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~-~~~~i~~  118 (323)
                      .|...+..|.|++..++.++..+.+ .|+||.+++...-.    +++|-+++.|..+++||+.... ++..+.+
T Consensus         2 ~K~~lvrlianl~~~~~~~Qd~vr~-~~Gi~liL~~c~iD----~~nP~irEwai~aiRnL~e~n~eNQ~~I~~   70 (102)
T PF09759_consen    2 FKRDLVRLIANLCYKNKEVQDLVRE-LGGIPLILSCCNID----DHNPFIREWAIFAIRNLCEGNPENQEFIAQ   70 (102)
T ss_pred             cHHHHHHHHHHHHhCCHHHHHHHHH-cCChHHHHHhcCCC----cccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence            4667889999999999999999999 99999999987643    7799999999999999987665 6665554

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.04  E-value=0.12  Score=50.21  Aligned_cols=254  Identities=11%  Similarity=0.054  Sum_probs=152.7

Q ss_pred             CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchhhhhhccCC
Q 020640           42 ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPM  121 (323)
Q Consensus        42 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g  121 (323)
                      .++...+-|+.++.|+-  +.++++.+..   -|+   ++|.++    +...-++.+|+-+|..|-...   .-++..|+
T Consensus       123 rn~~fv~LAL~~I~niG--~re~~ea~~~---DI~---KlLvS~----~~~~~vkqkaALclL~L~r~s---pDl~~~~~  187 (938)
T KOG1077|consen  123 RNPTFVCLALHCIANIG--SREMAEAFAD---DIP---KLLVSG----SSMDYVKQKAALCLLRLFRKS---PDLVNPGE  187 (938)
T ss_pred             CCcHHHHHHHHHHHhhc--cHhHHHHhhh---hhH---HHHhCC----cchHHHHHHHHHHHHHHHhcC---ccccChhh
Confidence            45666777888888887  3556766665   244   556644    334456666555555554332   22334467


Q ss_pred             cHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhh-------------cCHhHHHHHHHHHHH
Q 020640          122 VIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDE-------------GHQSAMKDVASAIFN  188 (323)
Q Consensus       122 ~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~-------------~~~~~~~~al~aL~~  188 (323)
                      +...++.+|.+.+..+...+...+-.|+...+....-.-.-++..|..+...             +.+=.....+++|.+
T Consensus       188 W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~  267 (938)
T KOG1077|consen  188 WAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQI  267 (938)
T ss_pred             HHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHh
Confidence            8889999999888888888888888887543321111111123333333221             245577788888887


Q ss_pred             hccCC--chhHHHHhhCchHHHHHHhhcC----chH-----HHHHHHHHHHhcC-HHHHHHHHhcCCHHHHHHHHhccCC
Q 020640          189 LCITH--ENKARAVRDGGVSVILKKIMDG----VHV-----DELLAILAMLSTN-HRAVEEIGDLGGVSCMLRIIRESTC  256 (323)
Q Consensus       189 L~~~~--~~~~~i~~~g~v~~Lv~ll~~~----~~~-----~~a~~~L~~l~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~  256 (323)
                      +-...  ..+.++.+  +++.++...++.    .++     ...+--.-+++.. +.-.+.+.+  .+..|.+++.+.. 
T Consensus       268 ~p~~~D~~~r~~l~e--vl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~--~~~~Lg~fls~rE-  342 (938)
T KOG1077|consen  268 YPTPEDPSTRARLNE--VLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSR--AVNQLGQFLSHRE-  342 (938)
T ss_pred             CCCCCCchHHHHHHH--HHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHH--HHHHHHHHhhccc-
Confidence            73322  34444443  344444444422    221     1112222233432 222233332  3788889998654 


Q ss_pred             hhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhh-cCCHHHHHHHHHHHHHHhcchhh
Q 020640          257 DRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQ-DGTARAKRKATGILERLKRTVNL  319 (323)
Q Consensus       257 ~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~A~~~L~~l~~~~~~  319 (323)
                      ..++.-|..-++.|+...+.  -..++.+  .+.++..++ ..+..++++|..+|..+|+-...
T Consensus       343 ~NiRYLaLEsm~~L~ss~~s--~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD~~Na  402 (938)
T KOG1077|consen  343 TNIRYLALESMCKLASSEFS--IDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCDVSNA  402 (938)
T ss_pred             ccchhhhHHHHHHHHhccch--HHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhchhhH
Confidence            77899999999999988754  2454443  777788887 55999999999999999976543

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.02  E-value=0.016  Score=56.72  Aligned_cols=200  Identities=11%  Similarity=0.028  Sum_probs=144.6

Q ss_pred             cccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHH-HhcCCCCchhhhhccCChHHHHHHhhhcC-HhHHHHHHHH
Q 020640          108 IHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALF-TLSALDSNKEVIGKSGALKPLIDLLDEGH-QSAMKDVASA  185 (323)
Q Consensus       108 ~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~-~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~-~~~~~~al~a  185 (323)
                      .....+...++.+ ..+.|.++.....+..+.....+|. .+.... .+    ....++++...++.+. ..-...++.+
T Consensus       492 ~~K~~~~~~Ik~~-~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~-~~----~~~v~~~~~s~~~~d~~~~en~E~L~a  565 (748)
T KOG4151|consen  492 KEKYERAKKIKPG-GYEALLRLGQQQFEEAKLKWYHALAGKIDFPG-ER----SYEVVKPLDSALHNDEKGLENFEALEA  565 (748)
T ss_pred             hhHHhcCcccccc-HHHHHHHHHHHhchHHHHHHHHHHhhhcCCCC-Cc----hhhhhhhhcchhhhhHHHHHHHHHHHH
Confidence            3444566677755 5999999998888888888888887 232211 11    1346777777777643 3345678999


Q ss_pred             HHHhccCC-chhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcCHHHHHHH-Hh-cCCHHHHHHHHhccCChhHH
Q 020640          186 IFNLCITH-ENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEI-GD-LGGVSCMLRIIRESTCDRNK  260 (323)
Q Consensus       186 L~~L~~~~-~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~~~~~~~i-~~-~g~i~~Lv~ll~~~~~~~~~  260 (323)
                      +.||+..+ ..|.++++.-+++.+-.++.+.  ..+..++..+.||..++..-... ++ ...++.....+.... .+..
T Consensus       566 ltnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~-E~~~  644 (748)
T KOG4151|consen  566 LTNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVAD-EKFE  644 (748)
T ss_pred             hhcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhh-hHHh
Confidence            99998866 5677888876666655555554  56888999999999998665554 44 346777777776543 7788


Q ss_pred             HHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHh
Q 020640          261 ENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLK  314 (323)
Q Consensus       261 ~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~  314 (323)
                      .++++++..++...++++..+..-..+...++.++.++++++|........++.
T Consensus       645 lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~  698 (748)
T KOG4151|consen  645 LAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLF  698 (748)
T ss_pred             hhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHH
Confidence            899999998877776655546556678899999999999999999888777744

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D

Probab=97.01  E-value=0.075  Score=48.96  Aligned_cols=275  Identities=16%  Similarity=0.155  Sum_probs=152.8

Q ss_pred             hHHHHHHHHhc--CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhcc
Q 020640           31 DHFLSLLKKMS--ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSI  108 (323)
Q Consensus        31 ~~i~~Lv~~l~--~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~  108 (323)
                      +-+..+++-+.  .+..+|+.++..|..-+. ++.+|..|.. .|.+..+++.+...    .+++..--.++.+++-++.
T Consensus        21 Dev~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra-~g~~~~l~~~l~~~----~~d~~~~l~~a~i~~~l~~   94 (361)
T PF07814_consen   21 DEVEYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRA-HGLVKRLFKALSDA----PDDDILALATAAILYVLSR   94 (361)
T ss_pred             HHHHHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHH-cCcHHHHHHHhccc----cchHHHHHHHHHHHHHHcc
Confidence            56777888885  346689999999999995 7899999999 99999999999632    2333444444455555655


Q ss_pred             ccchhhhhhccCCcHHHHHHHHhcC-CHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhh---------hcCHhH
Q 020640          109 HDNNKKLVAETPMVIPLLMDALRSG-TIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLD---------EGHQSA  178 (323)
Q Consensus       109 ~~~~~~~i~~~~g~i~~Lv~ll~~~-~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~---------~~~~~~  178 (323)
                      +..+...+.. .+....++.+++.. ..+.....-      .....+..+.. ...+...-+.+.         ......
T Consensus        95 d~~~~~l~~~-~~~~~ll~~Ll~~~~~~~~~~~~~------~~~~~~lsk~~-~~~~~~~~~~~~~~~~~~~~~~~~lsp  166 (361)
T PF07814_consen   95 DGLNMHLLLD-RDSLRLLLKLLKVDKSLDVPSDSD------SSRKKNLSKVQ-QKSRSLCKELLSSGSSWKSPKPPELSP  166 (361)
T ss_pred             CCcchhhhhc-hhHHHHHHHHhccccccccccchh------hhhhhhhhHHH-HHHHHHHHHHHhccccccccCCccccc
Confidence            5444444333 45677778888711 000000000      00000111111 111111111221         012234


Q ss_pred             HHHHHHHHHHhcc---------------CCchhHHHHhhCchHHHHHHhhc----C--------------chHHHHHHHH
Q 020640          179 MKDVASAIFNLCI---------------THENKARAVRDGGVSVILKKIMD----G--------------VHVDELLAIL  225 (323)
Q Consensus       179 ~~~al~aL~~L~~---------------~~~~~~~i~~~g~v~~Lv~ll~~----~--------------~~~~~a~~~L  225 (323)
                      +..|+.+|-.++.               .+--+.++.+.|++..++..+.+    .              ...+.++.+|
T Consensus       167 ~~lall~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~IL  246 (361)
T PF07814_consen  167 QTLALLALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSIL  246 (361)
T ss_pred             ccHHHHHHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHH
Confidence            4455555555530               01135556677899999998862    1              1246789999


Q ss_pred             HHHhcC-HHHHHHHHhc--CCHHHHH-HHHhccC--ChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhc--
Q 020640          226 AMLSTN-HRAVEEIGDL--GGVSCML-RIIREST--CDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQD--  297 (323)
Q Consensus       226 ~~l~~~-~~~~~~i~~~--g~i~~Lv-~ll~~~~--~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~--  297 (323)
                      .+.+.. ++++..+...  +.+..+. .++....  .......+++++.|++.+++..+..+- ..+....+..+...  
T Consensus       247 Es~T~~~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~-s~~l~~~~~~i~~~~~  325 (361)
T PF07814_consen  247 ESVTFLSEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFA-SPKLGQQLGLIVTSFF  325 (361)
T ss_pred             HHHHhcCccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhh-hhHhccchHHHHHhhc
Confidence            999884 6777777654  3333333 3333221  133467899999999999976544432 23333333222111  


Q ss_pred             ------------CCHHHHHHHHHHHHHHhcchhhc
Q 020640          298 ------------GTARAKRKATGILERLKRTVNLT  320 (323)
Q Consensus       298 ------------~~~~~~~~A~~~L~~l~~~~~~~  320 (323)
                                  ..-+..--+.++|-||+++.+.+
T Consensus       326 ~~~~~~~~~~~~~~~D~~IL~Lg~LINL~E~s~~n  360 (361)
T PF07814_consen  326 CVLSLPNYVPEESSFDILILALGLLINLVEHSEAN  360 (361)
T ss_pred             ccccccccccccccchHHHHHHHhHHHheeeCccC
Confidence                        12334455777888888776544

melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=96.93  E-value=0.0066  Score=50.43  Aligned_cols=112  Identities=18%  Similarity=0.200  Sum_probs=84.4

Q ss_pred             CCHHHHHHHHHHHHHhccccchhhhhhccC---------------CcHHHHHHHHhc------CCHHHHHHHHHHHHHhc
Q 020640           91 INPNLQEDVITTLLNLSIHDNNKKLVAETP---------------MVIPLLMDALRS------GTIETRSNAAAALFTLS  149 (323)
Q Consensus        91 ~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~---------------g~i~~Lv~ll~~------~~~~~~~~a~~~L~~L~  149 (323)
                      +.......++.+|.|++..++....+....               ..+..|+..+..      ...+-....+.++.|++
T Consensus         7 ~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS   86 (192)
T PF04063_consen    7 PKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLS   86 (192)
T ss_pred             CCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhc
Confidence            345567788899999998877666444322               245566666644      23566678999999999


Q ss_pred             CCCCchhhhhc--cCC--hHHHHHHhhhcCHhHHHHHHHHHHHhccCCchhHHHHhh
Q 020640          150 ALDSNKEVIGK--SGA--LKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRD  202 (323)
Q Consensus       150 ~~~~~~~~i~~--~g~--i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~i~~~  202 (323)
                      ..++.|..+.+  .+.  +..|+.+....+..-+.-++++|.|+|.+.+....++..
T Consensus        87 ~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~  143 (192)
T PF04063_consen   87 QLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSD  143 (192)
T ss_pred             CCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCc
Confidence            99999999987  344  677777777777777888999999999999888777764

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=96.93  E-value=0.21  Score=42.62  Aligned_cols=207  Identities=13%  Similarity=0.136  Sum_probs=134.6

Q ss_pred             hHHHHHHHHhcCCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHH-hhccccc-----CCCCCHHHHHHHHHHHH
Q 020640           31 DHFLSLLKKMSATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLS-PLSESKC-----ENGINPNLQEDVITTLL  104 (323)
Q Consensus        31 ~~i~~Lv~~l~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~-lL~~~~~-----~~~~~~~~~~~a~~~L~  104 (323)
                      +-+..++-.+.+ +..++.|+..|..--...++..-.+-...|.+..|++ .+.-+..     .......=.-+++..|.
T Consensus        26 dk~~~~i~~l~~-~p~rE~aL~ELskkre~~~dlA~~lW~s~g~~~~LLqEivaiYp~l~p~~l~~~qsnRVcnaL~LlQ  104 (293)
T KOG3036|consen   26 DKAYQLILSLVS-PPTREMALLELSKKREPFPDLAPMLWHSFGTMVALLQEIVAIYPSLSPPTLTPAQSNRVCNALALLQ  104 (293)
T ss_pred             cchhhHHHHhhC-CchHHHHHHHHHHhccCCccccHHHHHhcchHHHHHHHHHhcccccCCCCCCccccchHHHHHHHHH
Confidence            345555555543 4677888888888776556555554442554444432 2211100     00112233445777788


Q ss_pred             HhccccchhhhhhccCCcHHH-HHHHHh-----cCCHHHHHHHHHHHHHhcCCCCc--hhhhhccCChHHHHHHhhhcCH
Q 020640          105 NLSIHDNNKKLVAETPMVIPL-LMDALR-----SGTIETRSNAAAALFTLSALDSN--KEVIGKSGALKPLIDLLDEGHQ  176 (323)
Q Consensus       105 ~ls~~~~~~~~i~~~~g~i~~-Lv~ll~-----~~~~~~~~~a~~~L~~L~~~~~~--~~~i~~~g~i~~Lv~lL~~~~~  176 (323)
                      -++.+++.|..+....  +|. +-.+|.     .+.+..+-.+.+++..|...++.  ...+...+++|..++.+..+++
T Consensus       105 cvASHpdTr~~FL~A~--iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~GSe  182 (293)
T KOG3036|consen  105 CVASHPDTRRAFLRAH--IPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESGSE  182 (293)
T ss_pred             HHhcCcchHHHHHHcc--ChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcccH
Confidence            8999999999999864  554 333442     23577888999999999876543  4555678999999999999999


Q ss_pred             hHHHHHHHHHHHhccCCchhHHHHh----hC----chHHHHHHhhc-C--chHHHHHHHHHHHhcCHHHHHHHHh
Q 020640          177 SAMKDVASAIFNLCITHENKARAVR----DG----GVSVILKKIMD-G--VHVDELLAILAMLSTNHRAVEEIGD  240 (323)
Q Consensus       177 ~~~~~al~aL~~L~~~~~~~~~i~~----~g----~v~~Lv~ll~~-~--~~~~~a~~~L~~l~~~~~~~~~i~~  240 (323)
                      ..+..|...+..+-.++.+-..+.+    .-    .+..++.-+.+ +  .+.+..+++..+|+.++..|..+..
T Consensus       183 lSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar~aL~~  257 (293)
T KOG3036|consen  183 LSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRARAALRS  257 (293)
T ss_pred             HHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence            9999999998888777765433321    12    22233333332 2  5678899999999999988887754

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.92  E-value=0.025  Score=54.39  Aligned_cols=243  Identities=14%  Similarity=0.158  Sum_probs=139.2

Q ss_pred             HHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhcccc----
Q 020640           36 LLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHD----  110 (323)
Q Consensus        36 Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~----  110 (323)
                      |..... .|..++..|+..|..+.....- -      .-+....++.++      +++..++..|+.+++-++..-    
T Consensus       203 l~~~~~~~D~~Vrt~A~eglL~L~eg~kL-~------~~~Y~~A~~~ls------D~~e~VR~aAvqlv~v~gn~~p~~~  269 (823)
T KOG2259|consen  203 LIYLEHDQDFRVRTHAVEGLLALSEGFKL-S------KACYSRAVKHLS------DDYEDVRKAAVQLVSVWGNRCPAPL  269 (823)
T ss_pred             HHHHhcCCCcchHHHHHHHHHhhcccccc-c------HHHHHHHHHHhc------chHHHHHHHHHHHHHHHHhcCCCcc
Confidence            444443 4455666677766666642221 1      123455778888      778999999988776554321    


Q ss_pred             --c-hhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHH-
Q 020640          111 --N-NKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAI-  186 (323)
Q Consensus       111 --~-~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL-  186 (323)
                        + +...+...  +...+...+++.+-.++..|+++|..+....+   .+.....=+.+..-++.  .......-..+ 
T Consensus       270 e~e~~e~kl~D~--aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSe---e~i~QTLdKKlms~lRR--kr~ahkrpk~l~  342 (823)
T KOG2259|consen  270 ERESEEEKLKDA--AFSSVCRAVRDRSLSVRVEAAKALGEFEQVSE---EIIQQTLDKKLMSRLRR--KRTAHKRPKALY  342 (823)
T ss_pred             cchhhhhhhHHH--HHHHHHHHHhcCceeeeehHHHHhchHHHhHH---HHHHHHHHHHHhhhhhh--hhhcccchHHHH
Confidence              1 23333332  46667777778888888888888877744221   11111011111111111  11111111111 


Q ss_pred             HHh--cc------------CCchhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcC-HHHHHHHHhcCCHHHHHH
Q 020640          187 FNL--CI------------THENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTN-HRAVEEIGDLGGVSCMLR  249 (323)
Q Consensus       187 ~~L--~~------------~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~-~~~~~~i~~~g~i~~Lv~  249 (323)
                      .+-  +.            .++....++..|+-..++.-|.+.  ++++.|+..++.|+.+ |.-...     .+..|++
T Consensus       343 s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~~-----aldfLvD  417 (823)
T KOG2259|consen  343 SSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAVR-----ALDFLVD  417 (823)
T ss_pred             hcCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHHH-----HHHHHHH
Confidence            111  00            122344567778778888888777  8999999999999985 433222     3678999


Q ss_pred             HHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHH
Q 020640          250 IIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILE  311 (323)
Q Consensus       250 ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~  311 (323)
                      ++.+.- +.++..|..+|..++.+-     .+  ....++...+-+.+.++++++..-.+|.
T Consensus       418 MfNDE~-~~VRL~ai~aL~~Is~~l-----~i--~eeql~~il~~L~D~s~dvRe~l~elL~  471 (823)
T KOG2259|consen  418 MFNDEI-EVVRLKAIFALTMISVHL-----AI--REEQLRQILESLEDRSVDVREALRELLK  471 (823)
T ss_pred             HhccHH-HHHHHHHHHHHHHHHHHh-----ee--cHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            999654 889999999999988762     11  2334455555555555555555444443

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=96.90  E-value=0.086  Score=45.52  Aligned_cols=219  Identities=14%  Similarity=0.074  Sum_probs=140.5

Q ss_pred             CHHHHHHHHHHHHHhc-cccchhhhhhccCCcHHHHHHHH-------hcC--CH---HHHHHHHHHHHHhcCCCCchhhh
Q 020640           92 NPNLQEDVITTLLNLS-IHDNNKKLVAETPMVIPLLMDAL-------RSG--TI---ETRSNAAAALFTLSALDSNKEVI  158 (323)
Q Consensus        92 ~~~~~~~a~~~L~~ls-~~~~~~~~i~~~~g~i~~Lv~ll-------~~~--~~---~~~~~a~~~L~~L~~~~~~~~~i  158 (323)
                      +++.++.|+.-|..-- ..++-...+..+.|.+..|+.=+       ..+  +.   .-...+...+..++.+++.+..+
T Consensus         8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~F   87 (262)
T PF04078_consen    8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPF   87 (262)
T ss_dssp             SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHH
T ss_pred             CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHH
Confidence            4677887776665432 22333445556667666554322       111  12   23345666677788999999999


Q ss_pred             hccCChHHHHHHhhhc-----CHhHHHHHHHHHHHhccCCc--hhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHh
Q 020640          159 GKSGALKPLIDLLDEG-----HQSAMKDVASAIFNLCITHE--NKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLS  229 (323)
Q Consensus       159 ~~~g~i~~Lv~lL~~~-----~~~~~~~al~aL~~L~~~~~--~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~  229 (323)
                      .+.++.-.|..+|+..     -+.++..+++.++.|...++  ...-+.+.+.+|..++.|..|  -.+..|.-++..+-
T Consensus        88 l~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL  167 (262)
T PF04078_consen   88 LKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKIL  167 (262)
T ss_dssp             HHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHH
T ss_pred             HHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            9999888888888753     34578899999999988653  344456779999999999987  34667888888888


Q ss_pred             cCHHHHHHHHhc--------CCHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHH-----Hhh
Q 020640          230 TNHRAVEEIGDL--------GGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISK-----LAQ  296 (323)
Q Consensus       230 ~~~~~~~~i~~~--------g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~-----ll~  296 (323)
                      .++.+-..+.+.        .++..++.-+....++++-.+.+++...|+.+...  ++.+.  .++|..+.     -+.
T Consensus       168 ~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnpra--r~aL~--~~LP~~Lrd~~f~~~l  243 (262)
T PF04078_consen  168 LDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRA--REALR--QCLPDQLRDGTFSNIL  243 (262)
T ss_dssp             HSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTH--HHHHH--HHS-GGGTSSTTTTGG
T ss_pred             cchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHH--HHHHH--HhCcHHHhcHHHHHHH
Confidence            877666666543        14555555444455699999999999999998743  34443  23332211     123


Q ss_pred             cCCHHHHHHHHHHHHHHh
Q 020640          297 DGTARAKRKATGILERLK  314 (323)
Q Consensus       297 ~~~~~~~~~A~~~L~~l~  314 (323)
                      .+++.+++.=..++.|+.
T Consensus       244 ~~D~~~k~~l~qLl~nl~  261 (262)
T PF04078_consen  244 KDDPSTKRWLQQLLSNLN  261 (262)
T ss_dssp             CS-HHHHHHHHHHHHHTT
T ss_pred             hcCHHHHHHHHHHHHHhc
Confidence            347778887777777664

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=96.75  E-value=0.065  Score=51.38  Aligned_cols=147  Identities=14%  Similarity=0.101  Sum_probs=100.4

Q ss_pred             hHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhh---HHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHh
Q 020640           31 DHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSF---RALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNL  106 (323)
Q Consensus        31 ~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~---~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~l  106 (323)
                      ..+...+..|+ ..+.+|.+|+.....++.- -.+   -+.+.. .|.|  |.+-|.      .+++++.-..+.+++.+
T Consensus       604 ~ivStiL~~L~~k~p~vR~~aadl~~sl~~v-lk~c~e~~~l~k-lg~i--LyE~lg------e~ypEvLgsil~Ai~~I  673 (975)
T COG5181         604 MIVSTILKLLRSKPPDVRIRAADLMGSLAKV-LKACGETKELAK-LGNI--LYENLG------EDYPEVLGSILKAICSI  673 (975)
T ss_pred             HHHHHHHHHhcCCCccHHHHHHHHHHHHHHH-HHhcchHHHHHH-HhHH--HHHhcC------cccHHHHHHHHHHHHHH
Confidence            46677777785 5688999998887777642 111   122223 3322  333333      67889888888887766


Q ss_pred             ccccch---hhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhc-cCChHHHHHHhhhcCHhHHHHH
Q 020640          107 SIHDNN---KKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGK-SGALKPLIDLLDEGHQSAMKDV  182 (323)
Q Consensus       107 s~~~~~---~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~a  182 (323)
                      -....-   +..+   .|++|.|.-+|++.+..+....+..+..++...+...-..+ -.+--.|+++|++-+.+++.+|
T Consensus       674 ~sv~~~~~mqpPi---~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A  750 (975)
T COG5181         674 YSVHRFRSMQPPI---SGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNA  750 (975)
T ss_pred             hhhhcccccCCch---hhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhh
Confidence            433332   2233   35899999999999999999999999999876554333233 2345678888999999999999


Q ss_pred             HHHHHHhc
Q 020640          183 ASAIFNLC  190 (323)
Q Consensus       183 l~aL~~L~  190 (323)
                      ..++..++
T Consensus       751 ~~tfG~Is  758 (975)
T COG5181         751 TETFGCIS  758 (975)
T ss_pred             hhhhhhHH
Confidence            99888765

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=96.72  E-value=0.11  Score=49.49  Aligned_cols=248  Identities=11%  Similarity=0.017  Sum_probs=152.9

Q ss_pred             chhHHHHHHHHHHHhccChhhHHHHhhhcC----CHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhcc-ccchhhhhhc
Q 020640           44 LPDQTEAAKELRLLTKRMPSFRALFGESHD----AIPQLLSPLSESKCENGINPNLQEDVITTLLNLSI-HDNNKKLVAE  118 (323)
Q Consensus        44 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g----~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~-~~~~~~~i~~  118 (323)
                      ..+|..|+.+|.+-+..   .+..|.. .+    .+...++.-+      +++.+++..|...|..+-. .-.....+.+
T Consensus       192 ~avRLaaL~aL~dsl~f---v~~nf~~-E~erNy~mqvvceatq------~~d~e~q~aafgCl~kim~LyY~fm~~ymE  261 (858)
T COG5215         192 SAVRLAALKALMDSLMF---VQGNFCY-EEERNYFMQVVCEATQ------GNDEELQHAAFGCLNKIMMLYYKFMQSYME  261 (858)
T ss_pred             HHHHHHHHHHHHHHHHH---HHHhhcc-hhhhchhheeeehhcc------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45678888888873322   1222222 22    3334445445      7899999999998876532 2223344555


Q ss_pred             cCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCc-hhhh----------------hccCChHHHHHHhhh-------c
Q 020640          119 TPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSN-KEVI----------------GKSGALKPLIDLLDE-------G  174 (323)
Q Consensus       119 ~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~-~~~i----------------~~~g~i~~Lv~lL~~-------~  174 (323)
                      +. ......+.+++.+.++...+...-..++..+.. ...+                .-..++|.|+++|..       +
T Consensus       262 ~a-L~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~D  340 (858)
T COG5215         262 NA-LAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGD  340 (858)
T ss_pred             HH-HHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence            43 445556677899999988888776666532210 0000                013478999999975       2


Q ss_pred             CHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHh----hcC--chHHHHHHHHHHHhcC--HHHHHHHHhcCCHHH
Q 020640          175 HQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKI----MDG--VHVDELLAILAMLSTN--HRAVEEIGDLGGVSC  246 (323)
Q Consensus       175 ~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll----~~~--~~~~~a~~~L~~l~~~--~~~~~~i~~~g~i~~  246 (323)
                      +..+...|..+|.-.+....+  .     .+.++..+.    +++  .-++.++.++..+...  ++.+..++. .++|.
T Consensus       341 dWn~smaA~sCLqlfaq~~gd--~-----i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~-qalp~  412 (858)
T COG5215         341 DWNPSMAASSCLQLFAQLKGD--K-----IMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVP-QALPG  412 (858)
T ss_pred             ccchhhhHHHHHHHHHHHhhh--H-----hHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHH-hhhHH
Confidence            445677777777665433221  1     222333333    333  5688899999888885  466666654 56888


Q ss_pred             HHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhc---CCHHHHHHHHHHHHHHhc
Q 020640          247 MLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQD---GTARAKRKATGILERLKR  315 (323)
Q Consensus       247 Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~---~~~~~~~~A~~~L~~l~~  315 (323)
                      +..++.++ +-.+++.++|++..++.+-+    .++...+-+...+.-+.-   +.+.+..+..|...||.+
T Consensus       413 i~n~m~D~-~l~vk~ttAwc~g~iad~va----~~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~  479 (858)
T COG5215         413 IENEMSDS-CLWVKSTTAWCFGAIADHVA----MIISPCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVD  479 (858)
T ss_pred             HHHhcccc-eeehhhHHHHHHHHHHHHHH----HhcCccccccHHHHHHHhhhhccchHHhhhHHHHHhHHH
Confidence            88888854 48899999999999988654    333322333333332222   378888899999999886

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=96.69  E-value=0.081  Score=45.07  Aligned_cols=150  Identities=17%  Similarity=0.109  Sum_probs=109.6

Q ss_pred             HHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccc-hhhhhhccCCcHHH
Q 020640           47 QTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDN-NKKLVAETPMVIPL  125 (323)
Q Consensus        47 ~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~-~~~~i~~~~g~i~~  125 (323)
                      ..+|+..|.-++. .++.|..|.+ +..--.|-.+|.+... +..++.++-.++.++..|.+.++ ....+.-..+++|.
T Consensus        96 VcnaL~LlQcvAS-HpdTr~~FL~-A~iPlylYpfL~Tt~~-~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPl  172 (293)
T KOG3036|consen   96 VCNALALLQCVAS-HPDTRRAFLR-AHIPLYLYPFLNTTSK-SRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPL  172 (293)
T ss_pred             HHHHHHHHHHHhc-CcchHHHHHH-ccChhhhHHhhhcccc-CCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHH
Confidence            4678888888885 5889999999 8766667788865421 14567899999999999988776 33333333469999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhc--------cCChHHHHH-HhhhcCHhHHHHHHHHHHHhccCCchh
Q 020640          126 LMDALRSGTIETRSNAAAALFTLSALDSNKEVIGK--------SGALKPLID-LLDEGHQSAMKDVASAIFNLCITHENK  196 (323)
Q Consensus       126 Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~--------~g~i~~Lv~-lL~~~~~~~~~~al~aL~~L~~~~~~~  196 (323)
                      .++.+..+++..+.-|..++..+-.++..-..+.+        ...+..++. +.+.+++...++++++..+|+.+...|
T Consensus       173 CLrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar  252 (293)
T KOG3036|consen  173 CLRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRAR  252 (293)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHH
Confidence            99999999999999999999999877765444322        112233332 334578999999999999999877655


Q ss_pred             HHH
Q 020640          197 ARA  199 (323)
Q Consensus       197 ~~i  199 (323)
                      ..+
T Consensus       253 ~aL  255 (293)
T KOG3036|consen  253 AAL  255 (293)
T ss_pred             HHH
Confidence            544

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=96.62  E-value=0.3  Score=43.94  Aligned_cols=188  Identities=16%  Similarity=0.165  Sum_probs=115.9

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhc--cCChHHHHHHhhhcCHhHHHHHHHHHHHhccC---CchhHHH
Q 020640          125 LLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGK--SGALKPLIDLLDEGHQSAMKDVASAIFNLCIT---HENKARA  199 (323)
Q Consensus       125 ~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~--~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~---~~~~~~i  199 (323)
                      ..+..+...+...++.++..+.++....-....+..  ...+..+.+.++.+..+-+..|+.++.-++..   .+....+
T Consensus        47 ~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei  126 (309)
T PF05004_consen   47 EAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEI  126 (309)
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHH
Confidence            345555666788899999888888644332223322  44677788888887766677788877777665   2455566


Q ss_pred             HhhCchHHHHHHhhcC----chHHHHHHHHHHHhcC----HHHHHHHHhcCCHHHH--HHHHhccC---------ChhHH
Q 020640          200 VRDGGVSVILKKIMDG----VHVDELLAILAMLSTN----HRAVEEIGDLGGVSCM--LRIIREST---------CDRNK  260 (323)
Q Consensus       200 ~~~g~v~~Lv~ll~~~----~~~~~a~~~L~~l~~~----~~~~~~i~~~g~i~~L--v~ll~~~~---------~~~~~  260 (323)
                      .+. ..|.|...+.++    ..+..|+.+|+-++..    ++......+  .+..+  ....+.+.         ++.+.
T Consensus       127 ~~~-~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~~~~~l~  203 (309)
T PF05004_consen  127 FEE-LKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAEDDAALV  203 (309)
T ss_pred             HHH-HHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCCCccHHH
Confidence            654 778899988876    2445666666665551    222221111  12211  11222211         13466


Q ss_pred             HHHHHHHHHhcccChH-hHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhcch
Q 020640          261 ENCIAILHTICLSDRT-KWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTV  317 (323)
Q Consensus       261 ~~a~~~L~~L~~~~~~-~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~  317 (323)
                      .+|+.+-.-|...-+. .....+  ...++.|..++.+++..++-.|-..|..|.+..
T Consensus       204 ~aAL~aW~lLlt~~~~~~~~~~~--~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~  259 (309)
T PF05004_consen  204 AAALSAWALLLTTLPDSKLEDLL--EEALPALSELLDSDDVDVRIAAGEAIALLYELA  259 (309)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence            6666555555443332 234443  357999999999999999999999999887543

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=96.61  E-value=0.086  Score=52.88  Aligned_cols=263  Identities=14%  Similarity=0.136  Sum_probs=144.3

Q ss_pred             HHHHHh-cCCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchh
Q 020640           35 SLLKKM-SATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNK  113 (323)
Q Consensus        35 ~Lv~~l-~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~  113 (323)
                      .|++.+ ++|.+.|..|..-|++--.++ ...-..-.....+..++++|.      +.+.++|..|++.+.-++..    
T Consensus         9 ~LlekmtssDKDfRfMAtsDLm~eLqkd-si~Ld~dSe~kvv~~lLklL~------D~ngEVQnlAVKClg~lvsK----   77 (1233)
T KOG1824|consen    9 NLLEKMTSSDKDFRFMATSDLMTELQKD-SIKLDDDSERKVVKMLLKLLE------DKNGEVQNLAVKCLGPLVSK----   77 (1233)
T ss_pred             HHHHHccCCCcchhhhhHHHHHHHHHhh-hhhccccchhHHHHHHHHHHh------ccCcHHHHHHHHHHHHHHhh----
Confidence            566666 477889999988887766432 111111111457888999999      77899999999999987621    


Q ss_pred             hhhhccCCcHHHHHHHH----hcCCHHHHH-HHHHHHHHhcCCCCchhhhhccCChHHHHHHhhh------cCHhHHHHH
Q 020640          114 KLVAETPMVIPLLMDAL----RSGTIETRS-NAAAALFTLSALDSNKEVIGKSGALKPLIDLLDE------GHQSAMKDV  182 (323)
Q Consensus       114 ~~i~~~~g~i~~Lv~ll----~~~~~~~~~-~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~------~~~~~~~~a  182 (323)
                        +-+.  -++.+++-|    -++.+..+. .+++.....+.-++.........+.+.+...+..      +...++-.+
T Consensus        78 --vke~--~le~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~  153 (1233)
T KOG1824|consen   78 --VKED--QLETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEV  153 (1233)
T ss_pred             --chHH--HHHHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHH
Confidence              1111  122222222    122222222 2222222233223222223333444555544443      233366666


Q ss_pred             HHHHHHhccCC-chhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcC-HHHHHHHHhcCCHHHHHHHHhccCChh
Q 020640          183 ASAIFNLCITH-ENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTN-HRAVEEIGDLGGVSCMLRIIRESTCDR  258 (323)
Q Consensus       183 l~aL~~L~~~~-~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~  258 (323)
                      +..|.-+-... +--.. .+.+....++.-+.+.  .++++++.+|..++.. +..  .+.  +++..|++=|.......
T Consensus       154 lDil~d~lsr~g~ll~~-fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~--ly~--~li~~Ll~~L~~~~q~~  228 (1233)
T KOG1824|consen  154 LDILADVLSRFGTLLPN-FHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRD--LYV--ELIEHLLKGLSNRTQMS  228 (1233)
T ss_pred             HHHHHHHHHhhcccCcc-hHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHH--HHH--HHHHHHHhccCCCCchH
Confidence            66665442211 11111 2223334444444444  6799999999999983 211  111  23455555554333344


Q ss_pred             HHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHh---hcCCHHHHHHHHHHHHHHhcchhh
Q 020640          259 NKENCIAILHTICLSDRTKWKAMREEESTHGTISKLA---QDGTARAKRKATGILERLKRTVNL  319 (323)
Q Consensus       259 ~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll---~~~~~~~~~~A~~~L~~l~~~~~~  319 (323)
                      ..+--..+|..++.........=  -...++.+.+.+   ..++++.+++...++..+-...|.
T Consensus       229 ~~rt~Iq~l~~i~r~ag~r~~~h--~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~  290 (1233)
T KOG1824|consen  229 ATRTYIQCLAAICRQAGHRFGSH--LDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPK  290 (1233)
T ss_pred             HHHHHHHHHHHHHHHhcchhhcc--cchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChh
Confidence            55556667777766553211121  356788888888   777999999999999888765543

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=96.52  E-value=0.15  Score=51.70  Aligned_cols=218  Identities=12%  Similarity=0.076  Sum_probs=145.7

Q ss_pred             HHHHHHHHHHhccccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHH-hcCCCCchhhhhccCChHHHHHHhhh-
Q 020640           96 QEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFT-LSALDSNKEVIGKSGALKPLIDLLDE-  173 (323)
Q Consensus        96 ~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~-L~~~~~~~~~i~~~g~i~~Lv~lL~~-  173 (323)
                      +..|+..|..+-.--.-..-+.-.-|+.|.++++|++...+.+-.-+-+=.. |+.+++++..+++.++-...+..|.. 
T Consensus       487 RlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~  566 (1387)
T KOG1517|consen  487 RLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPS  566 (1387)
T ss_pred             HHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCc
Confidence            4445555544432222222222234689999999999988877755444444 46777888889887777777777766 


Q ss_pred             c--CHhHHHHHHHHHHHhccCCc-hhHHHHhhCchHHHHHHhhcC---chHHHHHHHHHHHhcC-HHHHHHHHhcCCHHH
Q 020640          174 G--HQSAMKDVASAIFNLCITHE-NKARAVRDGGVSVILKKIMDG---VHVDELLAILAMLSTN-HRAVEEIGDLGGVSC  246 (323)
Q Consensus       174 ~--~~~~~~~al~aL~~L~~~~~-~~~~i~~~g~v~~Lv~ll~~~---~~~~~a~~~L~~l~~~-~~~~~~i~~~g~i~~  246 (323)
                      +  +++-+..|+=.|..++.+.. ......+.+.+....+.|.++   -++.-++-+|..|=.+ +..|=.=++.++...
T Consensus       567 ~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~Ahek  646 (1387)
T KOG1517|consen  567 QAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEK  646 (1387)
T ss_pred             CCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHH
Confidence            3  45677778888888888764 555667778899999999885   2456666666666664 344333356678999


Q ss_pred             HHHHHhccCChhHHHHHHHHHHHhcccC----hHh---HHH--------HHhhcccH---HHHHHHhhcCCHHHHHHHHH
Q 020640          247 MLRIIRESTCDRNKENCIAILHTICLSD----RTK---WKA--------MREEESTH---GTISKLAQDGTARAKRKATG  308 (323)
Q Consensus       247 Lv~ll~~~~~~~~~~~a~~~L~~L~~~~----~~~---~~~--------~~~~~~~i---~~L~~ll~~~~~~~~~~A~~  308 (323)
                      |..++.+.. ++++-+|+.+|..+-...    ++.   +.+        ...+....   -.|+.+++.+++.++..-..
T Consensus       647 L~~~LsD~v-pEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v  725 (1387)
T KOG1517|consen  647 LILLLSDPV-PEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVV  725 (1387)
T ss_pred             HHHHhcCcc-HHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHH
Confidence            999999765 999999999999987752    111   111        11122222   37777888899999888776


Q ss_pred             HHHHHh
Q 020640          309 ILERLK  314 (323)
Q Consensus       309 ~L~~l~  314 (323)
                      .|.-+.
T Consensus       726 ~ls~~~  731 (1387)
T KOG1517|consen  726 ALSHFV  731 (1387)
T ss_pred             HHHHHH
Confidence            666544

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=96.49  E-value=0.032  Score=40.96  Aligned_cols=93  Identities=15%  Similarity=0.077  Sum_probs=64.5

Q ss_pred             HHHHHHHHHHHhcC-HHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhh
Q 020640          218 VDELLAILAMLSTN-HRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQ  296 (323)
Q Consensus       218 ~~~a~~~L~~l~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~  296 (323)
                      +.-++..|+.++.. +..-.... .-+++.++..+.+.+ .+++..|+.+|.+++....+..-..  -..+...|.+++.
T Consensus         3 R~ggli~Laa~ai~l~~~~~~~l-~~Il~pVL~~~~D~d-~rVRy~AcEaL~ni~k~~~~~~l~~--f~~IF~~L~kl~~   78 (97)
T PF12755_consen    3 RKGGLIGLAAVAIALGKDISKYL-DEILPPVLKCFDDQD-SRVRYYACEALYNISKVARGEILPY--FNEIFDALCKLSA   78 (97)
T ss_pred             hhHHHHHHHHHHHHchHhHHHHH-HHHHHHHHHHcCCCc-HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHc
Confidence            44566667766653 22211111 245788888888665 9999999999999998765432222  3578899999999


Q ss_pred             cCCHHHHHHHHHHHHHHh
Q 020640          297 DGTARAKRKATGILERLK  314 (323)
Q Consensus       297 ~~~~~~~~~A~~~L~~l~  314 (323)
                      +.++.++..|..+-+.|+
T Consensus        79 D~d~~Vr~~a~~Ld~llk   96 (97)
T PF12755_consen   79 DPDENVRSAAELLDRLLK   96 (97)
T ss_pred             CCchhHHHHHHHHHHHhc
Confidence            999999888866655553

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=96.47  E-value=0.051  Score=44.89  Aligned_cols=117  Identities=22%  Similarity=0.225  Sum_probs=83.2

Q ss_pred             hHHHHHHHHhcCCchhHHHHHHHHHHHhccCh-hhHHHHhhhcCCHHHHHHhhccccc---CCCCCHHHHHHHHHHHHHh
Q 020640           31 DHFLSLLKKMSATLPDQTEAAKELRLLTKRMP-SFRALFGESHDAIPQLLSPLSESKC---ENGINPNLQEDVITTLLNL  106 (323)
Q Consensus        31 ~~i~~Lv~~l~~~~~~~~~a~~~L~~l~~~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~---~~~~~~~~~~~a~~~L~~l  106 (323)
                      .....+++.+.+..... ..+..|...-+.++ .....|.+ .||+..|+++|.....   ...++...+..++.++..+
T Consensus        66 ~~p~~~i~~L~~~~~~~-~~L~~L~v~Lrt~~~~Wv~~Fl~-~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal  143 (187)
T PF06371_consen   66 SSPEWYIKKLKSRPSTS-KILKSLRVSLRTNPISWVQEFLE-LGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKAL  143 (187)
T ss_dssp             HHHHHHHHHHTTT--HH-HHHHHHHHHHHHS-HHHHHHH-H-HHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHccCccH-HHHHHHHHHhccCCchHHHHhcc-CCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHH
Confidence            46667888886432222 44555554444443 44578999 8999999999963211   0035667888899999999


Q ss_pred             ccccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 020640          107 SIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLS  149 (323)
Q Consensus       107 s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~  149 (323)
                      .........+....+.+..|+..|.+++..++..++.+|..+|
T Consensus       144 ~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc  186 (187)
T PF06371_consen  144 MNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC  186 (187)
T ss_dssp             TSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred             HccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence            8887788888888889999999999999999999999998876

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=96.45  E-value=0.12  Score=49.00  Aligned_cols=153  Identities=16%  Similarity=0.155  Sum_probs=109.8

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCH----hHHHHHHHHHHHhccCCchhHH
Q 020640          123 IPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQ----SAMKDVASAIFNLCITHENKAR  198 (323)
Q Consensus       123 i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~----~~~~~al~aL~~L~~~~~~~~~  198 (323)
                      ...+..++.+++...+..+...|..++.+......+....++..|..++.+++.    .+...+++++..+-.+.-.-..
T Consensus        85 a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW~  164 (713)
T KOG2999|consen   85 AKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSWE  164 (713)
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeeee
Confidence            345788889999888888999999999988888999999999999999998744    4555666666555332221111


Q ss_pred             HHhhCchHHHHHHhhc----CchHHHHHHHHHHHhcCHH-HHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHhccc
Q 020640          199 AVRDGGVSVILKKIMD----GVHVDELLAILAMLSTNHR-AVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLS  273 (323)
Q Consensus       199 i~~~g~v~~Lv~ll~~----~~~~~~a~~~L~~l~~~~~-~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~  273 (323)
                      .+...+|...+.+.+-    ..+-..|+.+|.++..+.+ .+..+.++--++.|+.+++.++ ..++..|...+..+...
T Consensus       165 ~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n-~~i~~~aial~nal~~~  243 (713)
T KOG2999|consen  165 SVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSN-QRIQTCAIALLNALFRK  243 (713)
T ss_pred             ecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcc-hHHHHHHHHHHHHHHhh
Confidence            2222233333333332    2567889999999999754 6666777788999999999765 88888888888887665


Q ss_pred             ChH
Q 020640          274 DRT  276 (323)
Q Consensus       274 ~~~  276 (323)
                      .++
T Consensus       244 a~~  246 (713)
T KOG2999|consen  244 APD  246 (713)
T ss_pred             CCh
Confidence            544

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=96.40  E-value=0.57  Score=44.85  Aligned_cols=271  Identities=8%  Similarity=0.063  Sum_probs=155.1

Q ss_pred             hHHHHHHHHhc-CC-chhHHHHHHHHHHHhccChhhHHHHhhhcCC-HHHHH-HhhcccccCCCCCHHHHHHHHHHHHH-
Q 020640           31 DHFLSLLKKMS-AT-LPDQTEAAKELRLLTKRMPSFRALFGESHDA-IPQLL-SPLSESKCENGINPNLQEDVITTLLN-  105 (323)
Q Consensus        31 ~~i~~Lv~~l~-~~-~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~-i~~Lv-~lL~~~~~~~~~~~~~~~~a~~~L~~-  105 (323)
                      |.+..+++... +. ...+++++.++.+.|.+ ..-...+.. .+. +-.++ --+++     ..+..++-.|+.+|.+ 
T Consensus       133 ~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces-~~Pe~li~~-sN~il~aiv~ga~k~-----et~~avRLaaL~aL~ds  205 (858)
T COG5215         133 GLMEEMVRNVGDEQPVSGKCESLGICGYHCES-EAPEDLIQM-SNVILFAIVMGALKN-----ETTSAVRLAALKALMDS  205 (858)
T ss_pred             HHHHHHHHhccccCchHhHHHHHHHHHHHhhc-cCHHHHHHH-hhHHHHHHHHhhccc-----CchHHHHHHHHHHHHHH
Confidence            44455555553 22 45689999999999954 433333333 443 22233 33332     4567888888888886 


Q ss_pred             hccccch--hhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcC-CCCchhhhhccCChHHHHHHhhhcCHhHHHHH
Q 020640          106 LSIHDNN--KKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSA-LDSNKEVIGKSGALKPLIDLLDEGHQSAMKDV  182 (323)
Q Consensus       106 ls~~~~~--~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a  182 (323)
                      +-.-..+  ++.-.  .-+.......-+.++.+++..+.++|..+-. +-.......+.-....+...+++.+.++...+
T Consensus       206 l~fv~~nf~~E~er--Ny~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qa  283 (858)
T COG5215         206 LMFVQGNFCYEEER--NYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQA  283 (858)
T ss_pred             HHHHHHhhcchhhh--chhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHH
Confidence            3222111  11111  1123334455567889999999999988742 22222233333233344456778888888888


Q ss_pred             HHHHHHhccCC-chhHHHH----------------hhCchHHHHHHhhc-C--------chHHHHHHHHHHHhcCHHHHH
Q 020640          183 ASAIFNLCITH-ENKARAV----------------RDGGVSVILKKIMD-G--------VHVDELLAILAMLSTNHRAVE  236 (323)
Q Consensus       183 l~aL~~L~~~~-~~~~~i~----------------~~g~v~~Lv~ll~~-~--------~~~~~a~~~L~~l~~~~~~~~  236 (323)
                      ...-..+|... +....+.                -..++|.|+.+|.. +        .+-..|..+|.-.+..  ...
T Consensus       284 vEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~--~gd  361 (858)
T COG5215         284 VEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQL--KGD  361 (858)
T ss_pred             HHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHH--hhh
Confidence            88766666543 2111111                12478889998874 1        2334443333333221  011


Q ss_pred             HHHhcCCHHHHHHHHhc---cCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 020640          237 EIGDLGGVSCMLRIIRE---STCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERL  313 (323)
Q Consensus       237 ~i~~~g~i~~Lv~ll~~---~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l  313 (323)
                      .     .+..+..+...   +++-.-++.|+.++..+.......+..-+. ...++.+.....+..--++..++|++-.+
T Consensus       362 ~-----i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V-~qalp~i~n~m~D~~l~vk~ttAwc~g~i  435 (858)
T COG5215         362 K-----IMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIV-PQALPGIENEMSDSCLWVKSTTAWCFGAI  435 (858)
T ss_pred             H-----hHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhH-HhhhHHHHHhcccceeehhhHHHHHHHHH
Confidence            1     22333333322   232445888999999987765443333332 57888888888877888999999999999


Q ss_pred             hcchh
Q 020640          314 KRTVN  318 (323)
Q Consensus       314 ~~~~~  318 (323)
                      +.|..
T Consensus       436 ad~va  440 (858)
T COG5215         436 ADHVA  440 (858)
T ss_pred             HHHHH
Confidence            87653

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.33  E-value=0.28  Score=50.50  Aligned_cols=214  Identities=15%  Similarity=0.141  Sum_probs=127.4

Q ss_pred             CCCHHHHHHHHHHHHHhccccchhhhhhccCCcHHHHHHHH----hcCCHHHHHHHHHHHHHhcCC-C-CchhhhhccCC
Q 020640           90 GINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDAL----RSGTIETRSNAAAALFTLSAL-D-SNKEVIGKSGA  163 (323)
Q Consensus        90 ~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll----~~~~~~~~~~a~~~L~~L~~~-~-~~~~~i~~~g~  163 (323)
                      +.+..+|.++..+|..++..++. ......  .+..+.+.|    ++.....+...+.+|..|-.. + +.... +.. .
T Consensus       665 ~~~~~vQkK~yrlL~~l~~~~s~-~~~~~q--~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~-i~k-~  739 (1176)
T KOG1248|consen  665 SSSTKVQKKAYRLLEELSSSPSG-EGLVEQ--RIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDL-IPK-L  739 (1176)
T ss_pred             cccHHHHHHHHHHHHHHhcCCch-hhHHHH--HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHH-HHH-H
Confidence            44788999999999998876332 323322  244444444    444666777777777777422 2 22222 222 2


Q ss_pred             hHHHHHHhhhcCHhHHHHHHHHHHHhccCCchhHHHHhhC------chHHHHHHhhcC----chHHHHHHHHHHHhcCHH
Q 020640          164 LKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDG------GVSVILKKIMDG----VHVDELLAILAMLSTNHR  233 (323)
Q Consensus       164 i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~i~~~g------~v~~Lv~ll~~~----~~~~~a~~~L~~l~~~~~  233 (323)
                      |+.++=.+++.+...+..+..+|..++.    .....+.|      .+...+..+..+    .....+.. |-.+..-=.
T Consensus       740 I~EvIL~~Ke~n~~aR~~Af~lL~~i~~----i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~-Ivai~~il~  814 (1176)
T KOG1248|consen  740 IPEVILSLKEVNVKARRNAFALLVFIGA----IQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASD-IVAITHILQ  814 (1176)
T ss_pred             HHHHHHhcccccHHHHhhHHHHHHHHHH----HHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHH-HHHHHHHHH
Confidence            3333334477788899999999988872    11111111      344455544433    23333333 222222111


Q ss_pred             HHHHHHhc----CCHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHH
Q 020640          234 AVEEIGDL----GGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGI  309 (323)
Q Consensus       234 ~~~~i~~~----g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~  309 (323)
                      ....+.+.    +.++.+...|.. .+..+...|++.+..++..-|..+-... ....++.+..|+++....++.+...+
T Consensus       815 e~~~~ld~~~l~~li~~V~~~L~s-~sreI~kaAI~fikvlv~~~pe~~l~~~-~~~LL~sll~ls~d~k~~~r~Kvr~L  892 (1176)
T KOG1248|consen  815 EFKNILDDETLEKLISMVCLYLAS-NSREIAKAAIGFIKVLVYKFPEECLSPH-LEELLPSLLALSHDHKIKVRKKVRLL  892 (1176)
T ss_pred             HHhccccHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHcCCHHHHhhh-HHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            11122333    345555555664 4499999999999999998876322222 23589999999999999999999999


Q ss_pred             HHHHhc
Q 020640          310 LERLKR  315 (323)
Q Consensus       310 L~~l~~  315 (323)
                      |..|.+
T Consensus       893 lekLir  898 (1176)
T KOG1248|consen  893 LEKLIR  898 (1176)
T ss_pred             HHHHHH
Confidence            999886

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=96.31  E-value=0.3  Score=45.70  Aligned_cols=181  Identities=12%  Similarity=0.137  Sum_probs=117.9

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHhcCCCC----chhhhhccCChHHHHHHhhhc-------CHhHHHHHHHHHHHhccCCc
Q 020640          126 LMDALRSGTIETRSNAAAALFTLSALDS----NKEVIGKSGALKPLIDLLDEG-------HQSAMKDVASAIFNLCITHE  194 (323)
Q Consensus       126 Lv~ll~~~~~~~~~~a~~~L~~L~~~~~----~~~~i~~~g~i~~Lv~lL~~~-------~~~~~~~al~aL~~L~~~~~  194 (323)
                      +..+++..+.+-+-.+.-.+..+..+++    +++.+.+.=+.+.+=+++..+       +...+.-++..|..+|+.++
T Consensus        16 ~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pE   95 (698)
T KOG2611|consen   16 CLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPE   95 (698)
T ss_pred             HHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChh
Confidence            4456666677777777777777776654    577788877788888888763       33456677888999999886


Q ss_pred             hh--HHHHhhCchHHHHHHhhcC---------chHHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHhccCChhHHHHH
Q 020640          195 NK--ARAVRDGGVSVILKKIMDG---------VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENC  263 (323)
Q Consensus       195 ~~--~~i~~~g~v~~Lv~ll~~~---------~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a  263 (323)
                      ..  ..++  ..||.|.+.+..+         .+.+.+-.+|..++..+.+...++..|+++.+.++-...+...-..-+
T Consensus        96 lAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~ala  173 (698)
T KOG2611|consen   96 LASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPDGSHDMALA  173 (698)
T ss_pred             hccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCCCchhHHHH
Confidence            43  3444  4789999999754         257888999999999999999999999999999887743212223334


Q ss_pred             HHHHHHhcccChH---hHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHH
Q 020640          264 IAILHTICLSDRT---KWKAMREEESTHGTISKLAQDGTARAKRKATGILE  311 (323)
Q Consensus       264 ~~~L~~L~~~~~~---~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~  311 (323)
                      ..++.-+...-..   ....+.   ..+..+..=....+...|-..+.+|.
T Consensus       174 l~Vlll~~~~~~cw~e~~~~fl---ali~~va~df~~~~~a~KfElc~lL~  221 (698)
T KOG2611|consen  174 LKVLLLLVSKLDCWSETIERFL---ALIAAVARDFAVLHNALKFELCHLLS  221 (698)
T ss_pred             HHHHHHHHHhcccCcCCHHHHH---HHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            4444333322211   011111   12333333333345666777777777

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.26  E-value=0.073  Score=52.17  Aligned_cols=245  Identities=15%  Similarity=0.143  Sum_probs=143.7

Q ss_pred             HHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhcccc
Q 020640           32 HFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHD  110 (323)
Q Consensus        32 ~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~  110 (323)
                      ..+..++.+. .|.+.+.-.-.-+.+.+...++..      .+++..+++=..      ++++.++..|+..+..+-.  
T Consensus        50 lF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a------~~avnt~~kD~~------d~np~iR~lAlrtm~~l~v--  115 (734)
T KOG1061|consen   50 LFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLA------ILAVNTFLKDCE------DPNPLIRALALRTMGCLRV--  115 (734)
T ss_pred             hhHHHHhhcccCCchHHHHHHHHHHHhhccCchHH------HhhhhhhhccCC------CCCHHHHHHHhhceeeEee--
Confidence            4444555553 445555556666666666555432      333444444333      7788888877777665532  


Q ss_pred             chhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHHhc
Q 020640          111 NNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLC  190 (323)
Q Consensus       111 ~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~  190 (323)
                         ..+.+.  ....+...+++.++.++..++-.+.++-  ..+.......|.++.|-+++.+.++.+..+|+.+|..+.
T Consensus       116 ---~~i~ey--~~~Pl~~~l~d~~~yvRktaa~~vakl~--~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~  188 (734)
T KOG1061|consen  116 ---DKITEY--LCDPLLKCLKDDDPYVRKTAAVCVAKLF--DIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIH  188 (734)
T ss_pred             ---hHHHHH--HHHHHHHhccCCChhHHHHHHHHHHHhh--cCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence               223332  3456778888999999998888777763  334556667999999999999889999999999999997


Q ss_pred             cCCch--hHHHHhhCchHHHHHHhhcCchHHHHHHHHHHHhcC--HHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHH
Q 020640          191 ITHEN--KARAVRDGGVSVILKKIMDGVHVDELLAILAMLSTN--HRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAI  266 (323)
Q Consensus       191 ~~~~~--~~~i~~~g~v~~Lv~ll~~~~~~~~a~~~L~~l~~~--~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~  266 (323)
                      ..+.+  ...+. .-.+..++..+... ....-+.+|-.++.+  ++.++..   ..+..+...+++.. ..+...+...
T Consensus       189 e~~~~~~~~~l~-~~~~~~lL~al~ec-~EW~qi~IL~~l~~y~p~d~~ea~---~i~~r~~p~Lqh~n-~avvlsavKv  262 (734)
T KOG1061|consen  189 ESHPSVNLLELN-PQLINKLLEALNEC-TEWGQIFILDCLAEYVPKDSREAE---DICERLTPRLQHAN-SAVVLSAVKV  262 (734)
T ss_pred             HhCCCCCccccc-HHHHHHHHHHHHHh-hhhhHHHHHHHHHhcCCCCchhHH---HHHHHhhhhhccCC-cceEeehHHH
Confidence            76543  11111 11223333333321 112223444445443  1112211   22455666666544 6677777777


Q ss_pred             HHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHH
Q 020640          267 LHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKA  306 (323)
Q Consensus       267 L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A  306 (323)
                      +..+....+. +...+ .....++|+.++.+.. +.+.-|
T Consensus       263 ~l~~~~~~~~-~~~~~-~~K~~~pl~tlls~~~-e~qyva  299 (734)
T KOG1061|consen  263 ILQLVKYLKQ-VNELL-FKKVAPPLVTLLSSES-EIQYVA  299 (734)
T ss_pred             HHHHHHHHHH-HHHHH-HHHhcccceeeecccc-hhhHHH
Confidence            7777766544 22222 2356677777776665 555543

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=96.25  E-value=0.91  Score=42.59  Aligned_cols=179  Identities=16%  Similarity=0.187  Sum_probs=118.7

Q ss_pred             CCCHHHHHHHHHHHHHhccccc----hhhhhhccCCcHHHHHHHHhcC-------CHHHHHHHHHHHHHhcCCCCc--hh
Q 020640           90 GINPNLQEDVITTLLNLSIHDN----NKKLVAETPMVIPLLMDALRSG-------TIETRSNAAAALFTLSALDSN--KE  156 (323)
Q Consensus        90 ~~~~~~~~~a~~~L~~ls~~~~----~~~~i~~~~g~i~~Lv~ll~~~-------~~~~~~~a~~~L~~L~~~~~~--~~  156 (323)
                      ..+.+-+-.|+-....+.+.++    +++.+++.-| .+.+=+++.+.       +.-.+.-++.+|..+|..++.  .+
T Consensus        22 ~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVG-f~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pElAsh~  100 (698)
T KOG2611|consen   22 GKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVG-FHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPELASHE  100 (698)
T ss_pred             ccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhc-cchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChhhccCH
Confidence            3455667777777778877766    4777888766 77788888643       233455677888888887764  34


Q ss_pred             hhhccCChHHHHHHhhhc-C------HhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcC---chHHHHHHHHH
Q 020640          157 VIGKSGALKPLIDLLDEG-H------QSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG---VHVDELLAILA  226 (323)
Q Consensus       157 ~i~~~g~i~~Lv~lL~~~-~------~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~---~~~~~a~~~L~  226 (323)
                      .+++  .||.|++++..+ +      ..+...+-.+|+..+....+...++..|+++.+.++-.-.   .-..-++.++.
T Consensus       101 ~~v~--~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~alal~Vll  178 (698)
T KOG2611|consen  101 EMVS--RIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPDGSHDMALALKVLL  178 (698)
T ss_pred             HHHH--hhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCCCchhHHHHHHHHH
Confidence            4444  689999998763 2      3378889999999999988999999999999999876533   23344444444


Q ss_pred             HHhcC----HHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHhcccC
Q 020640          227 MLSTN----HRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSD  274 (323)
Q Consensus       227 ~l~~~----~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~  274 (323)
                      -....    ++.-..|..-  |..+..-+...+ +..|...+.+|..+-...
T Consensus       179 l~~~~~~cw~e~~~~flal--i~~va~df~~~~-~a~KfElc~lL~~vl~~~  227 (698)
T KOG2611|consen  179 LLVSKLDCWSETIERFLAL--IAAVARDFAVLH-NALKFELCHLLSAVLSSE  227 (698)
T ss_pred             HHHHhcccCcCCHHHHHHH--HHHHHHHHHHhh-hHHHHHHHHHHHHHHhCC
Confidence            43331    3333334322  455554444334 667888888888554433

>KOG1788 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.18  E-value=0.51  Score=48.28  Aligned_cols=254  Identities=16%  Similarity=0.207  Sum_probs=154.1

Q ss_pred             HHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchhhhhhccCCcHHHHHHH
Q 020640           50 AAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDA  129 (323)
Q Consensus        50 a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~l  129 (323)
                      .-.+|..+-+++.+|++.|.+ +.|+..++.++-        +.+-+..-+.++..|-..+..+.  .. . -+-.+++.
T Consensus       662 gwDcLisllKnnteNqklFre-anGvklilpfli--------ndehRSslLrivscLitvdpkqv--hh-q-elmalVdt  728 (2799)
T KOG1788|consen  662 GWDCLISLLKNNTENQKLFRE-ANGVKLILPFLI--------NDEHRSSLLRIVSCLITVDPKQV--HH-Q-ELMALVDT  728 (2799)
T ss_pred             hHHHHHHHHhccchhhHHHHh-hcCceEEEEeee--------chHHHHHHHHHHHHHhccCcccc--cH-H-HHHHHHHH
Confidence            356777888889999999999 999999988885        33445555555554433222111  10 1 13346666


Q ss_pred             HhcC------------CHHHHHHHHHHHHHhcC-CCCchhhhhccCChHHHHHHhhh----------cCHhHHHHHHHHH
Q 020640          130 LRSG------------TIETRSNAAAALFTLSA-LDSNKEVIGKSGALKPLIDLLDE----------GHQSAMKDVASAI  186 (323)
Q Consensus       130 l~~~------------~~~~~~~a~~~L~~L~~-~~~~~~~i~~~g~i~~Lv~lL~~----------~~~~~~~~al~aL  186 (323)
                      |+++            .........++++..-. +...+..+++.|+...|...|..          ++..+-..-...|
T Consensus       729 Lksgmvt~IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyiklfkil  808 (2799)
T KOG1788|consen  729 LKSGMVTRISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKIL  808 (2799)
T ss_pred             HHhcceeccchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHH
Confidence            6653            23455667788888764 34557777889999999888752          1222222222333


Q ss_pred             HH-----hccCCchhHHH------------Hhh-C---------chHHHHHHh-h---cCc--hHHHHHHHHHHHhc---
Q 020640          187 FN-----LCITHENKARA------------VRD-G---------GVSVILKKI-M---DGV--HVDELLAILAMLST---  230 (323)
Q Consensus       187 ~~-----L~~~~~~~~~i------------~~~-g---------~v~~Lv~ll-~---~~~--~~~~a~~~L~~l~~---  230 (323)
                      +.     +|.+..|+..+            ++. |         .+..+.++- .   ...  -...|+.-+-.+-.   
T Consensus       809 FrlfTlavcenasNrmklhtvITsqtftsLLresgllcvnler~viqlllElalevlvppfLtSEsaAcaeVfelednif  888 (2799)
T KOG1788|consen  809 FRLFTLAVCENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVPPFLTSESAACAEVFELEDNIF  888 (2799)
T ss_pred             HHHHHHHHhhcchhhhheeeeeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCCchhhhhHHHHHHHhhccccee
Confidence            22     24455555432            121 2         111111110 0   011  11222322222211   


Q ss_pred             --------CHHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHh---hcCC
Q 020640          231 --------NHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLA---QDGT  299 (323)
Q Consensus       231 --------~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll---~~~~  299 (323)
                              ....++.|...|++..|+..+-.. ++++|..-...+..+++.++.. .+.....||++.|++++   .+|+
T Consensus       889 avntPsGqfnpdk~~iynagavRvlirslLln-ypK~qlefl~lleSlaRaspfn-aelltS~gcvellleIiypflsgs  966 (2799)
T KOG1788|consen  889 AVNTPSGQFNPDKQKIYNAGAVRVLIRSLLLN-YPKLQLEFLNLLESLARASPFN-AELLTSAGCVELLLEIIYPFLSGS  966 (2799)
T ss_pred             eeccCCCCcCchHhhhcccchhHHHHHHHHhh-ChHHHHHHHHHHHHHhhcCCCc-hhhhhcccHHHHHHHHhhhhhcCC
Confidence                    124677889999999999888754 4999999999999999988764 46667789999999985   4566


Q ss_pred             HHHHHHHHHHHHHHhcchh
Q 020640          300 ARAKRKATGILERLKRTVN  318 (323)
Q Consensus       300 ~~~~~~A~~~L~~l~~~~~  318 (323)
                      ...--.|..++..|+.++.
T Consensus       967 spfLshalkIvemLgayrl  985 (2799)
T KOG1788|consen  967 SPFLSHALKIVEMLGAYRL  985 (2799)
T ss_pred             chHhhccHHHHHHHhhccC
Confidence            6666677778888876553

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=96.14  E-value=0.21  Score=43.22  Aligned_cols=143  Identities=10%  Similarity=0.111  Sum_probs=99.5

Q ss_pred             CHhHHHHHHHHHHHhccCCchhHHHH-hh-CchHHHHHHhhc-------Cc-------hHHHHHHHHHHHhcCHHHHHHH
Q 020640          175 HQSAMKDVASAIFNLCITHENKARAV-RD-GGVSVILKKIMD-------GV-------HVDELLAILAMLSTNHRAVEEI  238 (323)
Q Consensus       175 ~~~~~~~al~aL~~L~~~~~~~~~i~-~~-g~v~~Lv~ll~~-------~~-------~~~~a~~~L~~l~~~~~~~~~i  238 (323)
                      +++.++.|+.-|+.--...++-..++ .. |.+..|++=+-+       +.       -.-+++..|..+|++|+.|..|
T Consensus         8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~F   87 (262)
T PF04078_consen    8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPF   87 (262)
T ss_dssp             SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHH
T ss_pred             CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHH
Confidence            56677777766655433333444333 33 777776653322       21       1345778888899999999999


Q ss_pred             HhcCCHHHHHHHHhccC----ChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHh
Q 020640          239 GDLGGVSCMLRIIREST----CDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLK  314 (323)
Q Consensus       239 ~~~g~i~~Lv~ll~~~~----~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~  314 (323)
                      +++...-.|..++...+    -+.++-.+.+++..|...+....-.++.+.++++.-++.+..|++..|.-|..++..+-
T Consensus        88 l~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL  167 (262)
T PF04078_consen   88 LKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKIL  167 (262)
T ss_dssp             HHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHH
T ss_pred             HHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            99997666667775422    15578999999999999776656677778999999999999999999999999999876


Q ss_pred             cch
Q 020640          315 RTV  317 (323)
Q Consensus       315 ~~~  317 (323)
                      -..
T Consensus       168 ~dd  170 (262)
T PF04078_consen  168 LDD  170 (262)
T ss_dssp             HSH
T ss_pred             cch
Confidence            543

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=96.11  E-value=0.7  Score=42.01  Aligned_cols=196  Identities=10%  Similarity=0.057  Sum_probs=139.4

Q ss_pred             CcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCC-chh-hhhc--cCChHHHHHHhhh--cCHhHHHHHHHHHHHhccCCc
Q 020640          121 MVIPLLMDALRSGTIETRSNAAAALFTLSALDS-NKE-VIGK--SGALKPLIDLLDE--GHQSAMKDVASAIFNLCITHE  194 (323)
Q Consensus       121 g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~-~~~-~i~~--~g~i~~Lv~lL~~--~~~~~~~~al~aL~~L~~~~~  194 (323)
                      +.+..|+..|..-+-+.++.++.+..++..... ++. ..++  ..--|.++..|-.  +++++...+...|+..+.+..
T Consensus        76 dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~mlRec~k~e~  155 (335)
T PF08569_consen   76 DLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDMLRECIKHES  155 (335)
T ss_dssp             THHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHHHHTTSHH
T ss_pred             CHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHHHHHHhhHH
Confidence            478889999999899999999999999975432 222 1121  1121333443333  377888889999999888887


Q ss_pred             hhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHH-hcCHHHHHHHHhcC---CHHHHHHHHhccCChhHHHHHHHHHH
Q 020640          195 NKARAVRDGGVSVILKKIMDG--VHVDELLAILAML-STNHRAVEEIGDLG---GVSCMLRIIRESTCDRNKENCIAILH  268 (323)
Q Consensus       195 ~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l-~~~~~~~~~i~~~g---~i~~Lv~ll~~~~~~~~~~~a~~~L~  268 (323)
                      ....++....+..+.+.+..+  ++...|..++..+ ..++.....+....   .+..+..++.++ +--++++++..|.
T Consensus       156 l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~-NYvtkrqslkLL~  234 (335)
T PF08569_consen  156 LAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESS-NYVTKRQSLKLLG  234 (335)
T ss_dssp             HHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-S-SHHHHHHHHHHHH
T ss_pred             HHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCC-CeEeehhhHHHHH
Confidence            788888888888899988877  6788888888874 45677767666553   567777888854 4778999999999


Q ss_pred             HhcccChH--hHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhcch
Q 020640          269 TICLSDRT--KWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTV  317 (323)
Q Consensus       269 ~L~~~~~~--~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~  317 (323)
                      .+-.+..+  .....+.+..-+..++.++++.+..++-.|=.+.+.+...+
T Consensus       235 ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp  285 (335)
T PF08569_consen  235 ELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANP  285 (335)
T ss_dssp             HHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-S
T ss_pred             HHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCC
Confidence            99887754  12244456778888999999999999999988888776543

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised

Probab=96.10  E-value=0.02  Score=48.64  Aligned_cols=87  Identities=15%  Similarity=0.144  Sum_probs=70.7

Q ss_pred             chHHHHHHHHHHHhcCHHHHHHHHhcC-------CHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccH
Q 020640          216 VHVDELLAILAMLSTNHRAVEEIGDLG-------GVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTH  288 (323)
Q Consensus       216 ~~~~~a~~~L~~l~~~~~~~~~i~~~g-------~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i  288 (323)
                      .++..++.+|+.|+..+.+.+.+..++       .+..|++++....+...+|-|+-+|.+|+..++...+.+-.+.+++
T Consensus       139 SPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i  218 (257)
T PF12031_consen  139 SPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCI  218 (257)
T ss_pred             CHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchH
Confidence            468999999999999998888887766       4555666665555577899999999999999987777777789999


Q ss_pred             HHHHHHhhcCCHHH
Q 020640          289 GTISKLAQDGTARA  302 (323)
Q Consensus       289 ~~L~~ll~~~~~~~  302 (323)
                      ..|+.++.+.....
T Consensus       219 ~~Li~FiE~a~~~~  232 (257)
T PF12031_consen  219 SHLIAFIEDAEQNA  232 (257)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999998764443

This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=95.95  E-value=0.025  Score=42.88  Aligned_cols=72  Identities=7%  Similarity=0.042  Sum_probs=59.8

Q ss_pred             CHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 020640          243 GVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKR  315 (323)
Q Consensus       243 ~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~  315 (323)
                      ++..|+++|..++++.+..-||.=|..++...|. -+.++.+.|+-..+.+++.+++++++..|..+++.+..
T Consensus        44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~-gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~  115 (119)
T PF11698_consen   44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPN-GRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV  115 (119)
T ss_dssp             HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GG-GHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCCCcceeehhhcchHHHHHHChh-HHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            6899999996554466777799999999999876 57888889999999999999999999999999988764

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=95.91  E-value=1.7  Score=44.06  Aligned_cols=220  Identities=15%  Similarity=0.146  Sum_probs=123.1

Q ss_pred             hhhhHHHHHHHHhcC--C---chhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCC----CHHHHHH
Q 020640           28 ADRDHFLSLLKKMSA--T---LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGI----NPNLQED   98 (323)
Q Consensus        28 ~~~~~i~~Lv~~l~~--~---~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~----~~~~~~~   98 (323)
                      .+.|.+..+++++..  +   .......+.-|...|-.-+.+|+.+.+ .|+++.|++.|.....  ++    ..++-+.
T Consensus       114 ~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~-~~al~~LL~~L~~~l~--~~~~~~~~~i~E~  190 (802)
T PF13764_consen  114 AECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLE-LNALNRLLSVLNRALQ--ANQNSSQAEIAEQ  190 (802)
T ss_pred             hcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHH-cCCHHHHHHHHHHHHh--CccccccchHHHH
Confidence            556778888888852  1   222333444444444457899999999 9999999999863222  22    2567777


Q ss_pred             HHHHHHHhccccchh-h----h---hh----ccCCcHHHHHHHHhcC----CHHHHHHHHHHHHHhcCCCCchhhhhccC
Q 020640           99 VITTLLNLSIHDNNK-K----L---VA----ETPMVIPLLMDALRSG----TIETRSNAAAALFTLSALDSNKEVIGKSG  162 (323)
Q Consensus        99 a~~~L~~ls~~~~~~-~----~---i~----~~~g~i~~Lv~ll~~~----~~~~~~~a~~~L~~L~~~~~~~~~i~~~g  162 (323)
                      .+.++..+....... .    .   ..    +....+..+++.+.+.    ++.+....+++|-.|+..++.+....-..
T Consensus       191 LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~  270 (802)
T PF13764_consen  191 LLEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH  270 (802)
T ss_pred             HHHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH
Confidence            777776553322210 0    0   00    0111255566666543    68889999999999987654433221111


Q ss_pred             ChHHHHHHhh--hcCHhHHHHHHHHHHHhccCC-------chhHHHHhhCchHHHHHHhhcC------------------
Q 020640          163 ALKPLIDLLD--EGHQSAMKDVASAIFNLCITH-------ENKARAVRDGGVSVILKKIMDG------------------  215 (323)
Q Consensus       163 ~i~~Lv~lL~--~~~~~~~~~al~aL~~L~~~~-------~~~~~i~~~g~v~~Lv~ll~~~------------------  215 (323)
                       ..+.+++=+  .....--..-+.++..++.+=       .-|..+++.|.+...+++|...                  
T Consensus       271 -F~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~  349 (802)
T PF13764_consen  271 -FKPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSR  349 (802)
T ss_pred             -HHHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcC
Confidence             122222211  111111122344454443321       3466788999999999988743                  


Q ss_pred             chHHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHh
Q 020640          216 VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIR  252 (323)
Q Consensus       216 ~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~  252 (323)
                      .-...++.+|.=||.+...-+.++..++++ +++-|.
T Consensus       350 psLp~iL~lL~GLa~gh~~tQ~~~~~~~l~-~lH~LE  385 (802)
T PF13764_consen  350 PSLPYILRLLRGLARGHEPTQLLIAEQLLP-LLHRLE  385 (802)
T ss_pred             CcHHHHHHHHHHHHhcCHHHHHHHHhhHHH-HHHHhh
Confidence            113457888888888644333335556664 444443

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=95.89  E-value=0.47  Score=46.75  Aligned_cols=216  Identities=9%  Similarity=0.049  Sum_probs=126.5

Q ss_pred             CCCHHHHHHHHHHHHHhccccchh--hhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhc--cCChH
Q 020640           90 GINPNLQEDVITTLLNLSIHDNNK--KLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGK--SGALK  165 (323)
Q Consensus        90 ~~~~~~~~~a~~~L~~ls~~~~~~--~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~--~g~i~  165 (323)
                      +..+.++..|+.++..++.--..+  ..+...-|+  .|...|....+++.-..++++..+...-. ..++..  .+.+|
T Consensus       810 nksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEylgeeypEvLgsILgAikaI~nvig-m~km~pPi~dllP  886 (1172)
T KOG0213|consen  810 NKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYLGEEYPEVLGSILGAIKAIVNVIG-MTKMTPPIKDLLP  886 (1172)
T ss_pred             CCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhcCcccHHHHHHHHHHHHHHHHhcc-ccccCCChhhhcc
Confidence            667899999999998887533322  223333343  37777888888888877777776642211 111111  57899


Q ss_pred             HHHHHhhhcCHhHHHHHHHHHHHhccCCchh----HHH-HhhCchHHHHHHhhcC--chHHHHHHHHHHHhc--CH----
Q 020640          166 PLIDLLDEGHQSAMKDVASAIFNLCITHENK----ARA-VRDGGVSVILKKIMDG--VHVDELLAILAMLST--NH----  232 (323)
Q Consensus       166 ~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~----~~i-~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~--~~----  232 (323)
                      .|..+|++....++.+++..+..+|......    .-+ +-.    .|+++|++.  .++..|...+..++.  .|    
T Consensus       887 rltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcf----eLlelLkahkK~iRRaa~nTfG~IakaIGPqdVL  962 (1172)
T KOG0213|consen  887 RLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICF----ELLELLKAHKKEIRRAAVNTFGYIAKAIGPQDVL  962 (1172)
T ss_pred             cchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhhhHHHHhcCHHHHH
Confidence            9999999999999999999999999866432    111 111    255555543  455555544444443  11    


Q ss_pred             ----------H--------HHHHHH-hc-CCHHHHHHHHhcc--CChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHH
Q 020640          233 ----------R--------AVEEIG-DL-GGVSCMLRIIRES--TCDRNKENCIAILHTICLSDRTKWKAMREEESTHGT  290 (323)
Q Consensus       233 ----------~--------~~~~i~-~~-g~i~~Lv~ll~~~--~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~  290 (323)
                                +        ..-.|+ +. |-...|=.++.+.  ++..+|.-.+++++.+...-.+..+.-+  ....+.
T Consensus       963 atLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtPe~nVQnGVLkalsf~FeyigemskdYi--yav~Pl 1040 (1172)
T KOG0213|consen  963 ATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDYI--YAVTPL 1040 (1172)
T ss_pred             HHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhHH--HHhhHH
Confidence                      0        111122 22 3222222333332  2256788888888877665433222222  234555


Q ss_pred             HHHHhhcCCHHHHHHHHHHHHHHh
Q 020640          291 ISKLAQDGTARAKRKATGILERLK  314 (323)
Q Consensus       291 L~~ll~~~~~~~~~~A~~~L~~l~  314 (323)
                      |-.-+-+.+..-++-|+.+++-++
T Consensus      1041 leDAlmDrD~vhRqta~~~I~Hl~ 1064 (1172)
T KOG0213|consen 1041 LEDALMDRDLVHRQTAMNVIKHLA 1064 (1172)
T ss_pred             HHHhhccccHHHHHHHHHHHHHHh
Confidence            555566667777777777777665

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=95.81  E-value=0.59  Score=42.46  Aligned_cols=214  Identities=13%  Similarity=0.152  Sum_probs=146.3

Q ss_pred             hhHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHH-----HHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHH
Q 020640           30 RDHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRA-----LFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTL  103 (323)
Q Consensus        30 ~~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~-----~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L  103 (323)
                      .+.+..|+..|. -+-+.|..+.....++.+.....+.     .+..   --|.++..|-.+    -+++++.-.+-..|
T Consensus        75 ~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~---~~peil~~L~~g----y~~~dial~~g~ml  147 (335)
T PF08569_consen   75 SDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLER---HRPEILDILLRG----YENPDIALNCGDML  147 (335)
T ss_dssp             HTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT-----THHHHHHHHG----GGSTTTHHHHHHHH
T ss_pred             hCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHh---CCHHHHHHHHHH----hcCccccchHHHHH
Confidence            355666666664 4567788888888888876655432     2222   223344334333    34678888888889


Q ss_pred             HHhccccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhc-CCCCchhhhhc---cCChHHHHHHhhhcCHhHH
Q 020640          104 LNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLS-ALDSNKEVIGK---SGALKPLIDLLDEGHQSAM  179 (323)
Q Consensus       104 ~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~-~~~~~~~~i~~---~g~i~~Lv~lL~~~~~~~~  179 (323)
                      +.+..++.-.+.+...+ .+..+....+.++-++...|..++..+- .+.........   ........++|.+++=-++
T Consensus       148 Rec~k~e~l~~~iL~~~-~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtk  226 (335)
T PF08569_consen  148 RECIKHESLAKIILYSE-CFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTK  226 (335)
T ss_dssp             HHHTTSHHHHHHHHTSG-GGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHH
T ss_pred             HHHHhhHHHHHHHhCcH-HHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEee
Confidence            99988887666677755 6777899999999999999999999974 55544333333   3456677788999999999


Q ss_pred             HHHHHHHHHhccCCchhHHHHh----hCchHHHHHHhhcC--chHHHHHHHHHHHhcC----HHHHHHHHhcCCHHHHHH
Q 020640          180 KDVASAIFNLCITHENKARAVR----DGGVSVILKKIMDG--VHVDELLAILAMLSTN----HRAVEEIGDLGGVSCMLR  249 (323)
Q Consensus       180 ~~al~aL~~L~~~~~~~~~i~~----~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~----~~~~~~i~~~g~i~~Lv~  249 (323)
                      ..++..|..|-.+..|-..+..    ..-+..++.+|++.  .++..|.-++--...+    ++.+..+..+.  ..|+.
T Consensus       227 rqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~I~~iL~~Nr--~kLl~  304 (335)
T PF08569_consen  227 RQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPPIVDILIKNR--EKLLR  304 (335)
T ss_dssp             HHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHHHHHHHHHTH--HHHHH
T ss_pred             hhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChHHHHHHHHHH--HHHHH
Confidence            9999999999988887665533    25677888888876  7899998888877775    35666666553  55555


Q ss_pred             HHhc
Q 020640          250 IIRE  253 (323)
Q Consensus       250 ll~~  253 (323)
                      .+..
T Consensus       305 fl~~  308 (335)
T PF08569_consen  305 FLKD  308 (335)
T ss_dssp             HHHT
T ss_pred             HHHh
Confidence            5554

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=95.80  E-value=0.045  Score=41.51  Aligned_cols=77  Identities=12%  Similarity=0.246  Sum_probs=63.7

Q ss_pred             cccchhhhhHHHHHHHHhc--CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHH
Q 020640           23 EGITEADRDHFLSLLKKMS--ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVI  100 (323)
Q Consensus        23 ~~~~~~~~~~i~~Lv~~l~--~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~  100 (323)
                      .-+.+.+...+..|++.|.  +|+.+..-|+.-|..+++.-|..|..+.+ .|+=+.+++++.      ++|++++..|+
T Consensus        35 ~kf~~~~~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~-lg~K~~vM~Lm~------h~d~eVr~eAL  107 (119)
T PF11698_consen   35 DKFEENNFELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEK-LGAKERVMELMN------HEDPEVRYEAL  107 (119)
T ss_dssp             GGGSSGGGHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHH-HSHHHHHHHHTS-------SSHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHh-cChHHHHHHHhc------CCCHHHHHHHH
Confidence            3345577789999999994  45677777999999999999999888888 999999999999      78999999999


Q ss_pred             HHHHHh
Q 020640          101 TTLLNL  106 (323)
Q Consensus       101 ~~L~~l  106 (323)
                      .++..+
T Consensus       108 ~avQkl  113 (119)
T PF11698_consen  108 LAVQKL  113 (119)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998765

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=95.80  E-value=0.32  Score=46.89  Aligned_cols=151  Identities=15%  Similarity=0.147  Sum_probs=96.3

Q ss_pred             ChHHHHHHhhhcCHhHHHHHHHHHHHhccCCchhHHHHhh-CchHHHHHHhhcC--chHHHHHHHHHHHhcCHHHHHHH-
Q 020640          163 ALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRD-GGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEI-  238 (323)
Q Consensus       163 ~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~i~~~-g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~~~~~~~i-  238 (323)
                      ++...+++|++..+.++..|+.....|+.--.++.+.-.. ..-..|.+.|...  ++.-..+.+++.+.+.-..+..- 
T Consensus       605 ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mqp  684 (975)
T COG5181         605 IVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQP  684 (975)
T ss_pred             HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhcccccCC
Confidence            5666777888899999999999888875432222221111 1122355555433  34444444444444321111100 


Q ss_pred             HhcCCHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 020640          239 GDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKR  315 (323)
Q Consensus       239 ~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~  315 (323)
                      =-.|++|.|..+|+..+ .+++.+....+.-+|...++. -...+=..+.--|++.+++.+.+++++|...+--+++
T Consensus       685 Pi~~ilP~ltPILrnkh-~Kv~~nti~lvg~I~~~~pey-i~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~  759 (975)
T COG5181         685 PISGILPSLTPILRNKH-QKVVANTIALVGTICMNSPEY-IGVREWMRICFELVDSLKSWNKEIRRNATETFGCISR  759 (975)
T ss_pred             chhhccccccHhhhhhh-HHHhhhHHHHHHHHHhcCccc-CCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHh
Confidence            11378999999999877 899999999999999988762 2222223466778888999999999999887765554

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=95.79  E-value=0.069  Score=39.16  Aligned_cols=91  Identities=13%  Similarity=0.086  Sum_probs=60.9

Q ss_pred             HHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchhhhhhc-cCCcHHH
Q 020640           47 QTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAE-TPMVIPL  125 (323)
Q Consensus        47 ~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~-~~g~i~~  125 (323)
                      |.-++..|...+..-+..-....+  ..+++++..+.      +++..++..|+.+|+|++..-.  ..+.. -..+...
T Consensus         3 R~ggli~Laa~ai~l~~~~~~~l~--~Il~pVL~~~~------D~d~rVRy~AcEaL~ni~k~~~--~~~l~~f~~IF~~   72 (97)
T PF12755_consen    3 RKGGLIGLAAVAIALGKDISKYLD--EILPPVLKCFD------DQDSRVRYYACEALYNISKVAR--GEILPYFNEIFDA   72 (97)
T ss_pred             hhHHHHHHHHHHHHchHhHHHHHH--HHHHHHHHHcC------CCcHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence            456677777776554443333333  47888888888      8899999999999999986543  22221 1236777


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHh
Q 020640          126 LMDALRSGTIETRSNAAAALFTL  148 (323)
Q Consensus       126 Lv~ll~~~~~~~~~~a~~~L~~L  148 (323)
                      |.+++.+.++.++..| ..|-+|
T Consensus        73 L~kl~~D~d~~Vr~~a-~~Ld~l   94 (97)
T PF12755_consen   73 LCKLSADPDENVRSAA-ELLDRL   94 (97)
T ss_pred             HHHHHcCCchhHHHHH-HHHHHH
Confidence            7888788887777655 554443

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=95.71  E-value=0.079  Score=36.52  Aligned_cols=68  Identities=12%  Similarity=0.182  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhccc
Q 020640          218 VDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEEST  287 (323)
Q Consensus       218 ~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~  287 (323)
                      .+.+++++.++++.+.+...+-+.++++.++++.+.++...+|--|.-+|..++...+.  .+++.+.|+
T Consensus         4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G--~~~L~~~gW   71 (73)
T PF14668_consen    4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEG--AEILDELGW   71 (73)
T ss_pred             HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHH--HHHHHHcCC
Confidence            46799999999999999998888899999999999766677888999999999887754  466666654

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.55  E-value=2.4  Score=42.14  Aligned_cols=254  Identities=17%  Similarity=0.147  Sum_probs=125.7

Q ss_pred             HHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchh
Q 020640           35 SLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNK  113 (323)
Q Consensus        35 ~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~  113 (323)
                      .+-+.++ ....+..+|...+..+...+.   +.+..   .+..|--+|.      ++.+.++-.|..+|..+|......
T Consensus       249 fl~s~l~~K~emV~~EaArai~~l~~~~~---r~l~p---avs~Lq~fls------sp~~~lRfaAvRtLnkvAm~~P~~  316 (865)
T KOG1078|consen  249 FLESCLRHKSEMVIYEAARAIVSLPNTNS---RELAP---AVSVLQLFLS------SPKVALRFAAVRTLNKVAMKHPQA  316 (865)
T ss_pred             HHHHHHhchhHHHHHHHHHHHhhccccCH---hhcch---HHHHHHHHhc------CcHHHHHHHHHHHHHHHHHhCCcc
Confidence            3334443 345677888888888875443   22222   5666666677      778899999999999887533322


Q ss_pred             hhhhcc---------C--CcHHHHHHHHhcCCHHHHHHHHHHHHHhcC--CCCchhhhhc-------------cCChHHH
Q 020640          114 KLVAET---------P--MVIPLLMDALRSGTIETRSNAAAALFTLSA--LDSNKEVIGK-------------SGALKPL  167 (323)
Q Consensus       114 ~~i~~~---------~--g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~--~~~~~~~i~~-------------~g~i~~L  167 (323)
                      ......         .  -....+..+|+.+++........-+.+...  .++.+..+++             .+.+..|
T Consensus       317 v~~cN~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL  396 (865)
T KOG1078|consen  317 VTVCNLDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFL  396 (865)
T ss_pred             ccccchhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHH
Confidence            211110         0  012234455666655555555444444432  2222222211             1112222


Q ss_pred             HHHhhh-cCHhHHHHHHHHHHHhccCC-chhHHHHhhCchHHHHHHhhcCchHHHHHHHHHHHhcC-HHHHHHHHhcCCH
Q 020640          168 IDLLDE-GHQSAMKDVASAIFNLCITH-ENKARAVRDGGVSVILKKIMDGVHVDELLAILAMLSTN-HRAVEEIGDLGGV  244 (323)
Q Consensus       168 v~lL~~-~~~~~~~~al~aL~~L~~~~-~~~~~i~~~g~v~~Lv~ll~~~~~~~~a~~~L~~l~~~-~~~~~~i~~~g~i  244 (323)
                      ..+|++ +.-+.+.....++..+.... +.|..     ++..|..++.+.....-+.++|.-+-.. |..   ..-...+
T Consensus       397 ~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~-----~L~~LCefIEDce~~~i~~rILhlLG~EgP~a---~~Pskyi  468 (865)
T KOG1078|consen  397 SNMLREEGGFEFKRAIVDAIIDIIEENPDSKER-----GLEHLCEFIEDCEFTQIAVRILHLLGKEGPKA---PNPSKYI  468 (865)
T ss_pred             HHHHHhccCchHHHHHHHHHHHHHHhCcchhhH-----HHHHHHHHHHhccchHHHHHHHHHHhccCCCC---CCcchhh
Confidence            222222 12222222333332222211 11111     2223333333333333344433333221 100   0001134


Q ss_pred             HHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 020640          245 SCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKR  315 (323)
Q Consensus       245 ~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~  315 (323)
                      ..+...+--.+ ..++-.|..+|..+....+..      ...+.-.|..++.+.++++++.|...|.++..
T Consensus       469 r~iyNRviLEn-~ivRaaAv~alaKfg~~~~~l------~~sI~vllkRc~~D~DdevRdrAtf~l~~l~~  532 (865)
T KOG1078|consen  469 RFIYNRVILEN-AIVRAAAVSALAKFGAQDVVL------LPSILVLLKRCLNDSDDEVRDRATFYLKNLEE  532 (865)
T ss_pred             HHHhhhhhhhh-hhhHHHHHHHHHHHhcCCCCc------cccHHHHHHHHhcCchHHHHHHHHHHHHHhhh
Confidence            44443333233 778889999999998655432      23445566667788899999999999999873

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=95.52  E-value=0.17  Score=43.95  Aligned_cols=96  Identities=16%  Similarity=0.128  Sum_probs=79.3

Q ss_pred             HHHHHHHHHHHhc-CHHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhh
Q 020640          218 VDELLAILAMLST-NHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQ  296 (323)
Q Consensus       218 ~~~a~~~L~~l~~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~  296 (323)
                      ...|+++|.-++. +|..|..+.++..+..|++++....+..++.+++.+|..+..+++.+.+ .+++.+|+..++.+++
T Consensus       108 i~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r-~FE~~~Gl~~v~~llk  186 (257)
T PF08045_consen  108 IALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQR-DFEELNGLSTVCSLLK  186 (257)
T ss_pred             HHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHH-HHHHhCCHHHHHHHHc
Confidence            4457788887777 7999999999999999999996444588999999999999999988765 5578999999999997


Q ss_pred             cC--CHHHHHHHHHHHHHHh
Q 020640          297 DG--TARAKRKATGILERLK  314 (323)
Q Consensus       297 ~~--~~~~~~~A~~~L~~l~  314 (323)
                      +.  +.+++-|....|.-..
T Consensus       187 ~~~~~~~~r~K~~EFL~fyl  206 (257)
T PF08045_consen  187 SKSTDRELRLKCIEFLYFYL  206 (257)
T ss_pred             cccccHHHhHHHHHHHHHHH
Confidence            76  6888888777765443

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=95.43  E-value=1.2  Score=36.53  Aligned_cols=93  Identities=23%  Similarity=0.229  Sum_probs=73.1

Q ss_pred             CHHHHHHHHHHHHHhccccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHh
Q 020640           92 NPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLL  171 (323)
Q Consensus        92 ~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL  171 (323)
                      ++.++..++.++.-|+..-   ..+++ + +++.+...|+++++.+++.|+.+|..|...+--+.+   ...+..++.++
T Consensus         1 ~~~vR~n~i~~l~DL~~r~---~~~ve-~-~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k---~~l~~~~l~~l   72 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRY---PNLVE-P-YLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVK---GQLFSRILKLL   72 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhC---cHHHH-h-HHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeeh---hhhhHHHHHHH
Confidence            4688999999999887643   34444 2 688999999999999999999999999765432222   22347888889


Q ss_pred             hhcCHhHHHHHHHHHHHhccC
Q 020640          172 DEGHQSAMKDVASAIFNLCIT  192 (323)
Q Consensus       172 ~~~~~~~~~~al~aL~~L~~~  192 (323)
                      .++++.++..|..++..+...
T Consensus        73 ~D~~~~Ir~~A~~~~~e~~~~   93 (178)
T PF12717_consen   73 VDENPEIRSLARSFFSELLKK   93 (178)
T ss_pred             cCCCHHHHHHHHHHHHHHHHh
Confidence            899999999999999988765

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=95.34  E-value=1.5  Score=43.88  Aligned_cols=165  Identities=12%  Similarity=0.082  Sum_probs=103.7

Q ss_pred             HhcCCHHHHHHHH-HHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHHhccCCchhHHHHhhCchHHH
Q 020640          130 LRSGTIETRSNAA-AALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVI  208 (323)
Q Consensus       130 l~~~~~~~~~~a~-~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~L  208 (323)
                      +.+.+...+..|+ ++|..++..++ -.     -..+.+++...+.+.++++..---|.+.+...+....+    +++.+
T Consensus        28 l~s~n~~~kidAmK~iIa~M~~G~d-ms-----sLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lL----avNti   97 (757)
T COG5096          28 LESSNDYKKIDAMKKIIAQMSLGED-MS-----SLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALL----AVNTI   97 (757)
T ss_pred             ccccChHHHHHHHHHHHHHHhcCCC-hH-----HHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHH----HHHHH
Confidence            3444444444443 45555554443 11     13556666666777888888877777777766633333    45566


Q ss_pred             HHHhhcC--chHHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcc
Q 020640          209 LKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEES  286 (323)
Q Consensus       209 v~ll~~~--~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~  286 (323)
                      .+=+.++  .++-.|++.|.-+=. ++    ++. .+++.+.+.+++.+ +.++..|+-++..+-..++    .+..+.|
T Consensus        98 ~kDl~d~N~~iR~~AlR~ls~l~~-~e----l~~-~~~~~ik~~l~d~~-ayVRk~Aalav~kly~ld~----~l~~~~g  166 (757)
T COG5096          98 QKDLQDPNEEIRGFALRTLSLLRV-KE----LLG-NIIDPIKKLLTDPH-AYVRKTAALAVAKLYRLDK----DLYHELG  166 (757)
T ss_pred             HhhccCCCHHHHHHHHHHHHhcCh-HH----HHH-HHHHHHHHHccCCc-HHHHHHHHHHHHHHHhcCH----hhhhccc
Confidence            6666655  355556655544322 11    111 23677778888665 8888888888888877664    3344567


Q ss_pred             cHHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 020640          287 THGTISKLAQDGTARAKRKATGILERLKR  315 (323)
Q Consensus       287 ~i~~L~~ll~~~~~~~~~~A~~~L~~l~~  315 (323)
                      .+..+..++.+.+|.+..+|...|..+..
T Consensus       167 ~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~  195 (757)
T COG5096         167 LIDILKELVADSDPIVIANALASLAEIDP  195 (757)
T ss_pred             HHHHHHHHhhCCCchHHHHHHHHHHHhch
Confidence            88888888888888888888888877754

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=95.34  E-value=0.36  Score=45.83  Aligned_cols=153  Identities=18%  Similarity=0.196  Sum_probs=109.3

Q ss_pred             ChHHHHHHhhhcCHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcCch------HHHHHHHHHHHhcCHHHHH
Q 020640          163 ALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDGVH------VDELLAILAMLSTNHRAVE  236 (323)
Q Consensus       163 ~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~~~------~~~a~~~L~~l~~~~~~~~  236 (323)
                      ....+.+++.+++...+..++.-|..|+.+..-...+++..++..|..++.+++.      ...+++++..+-...-.-=
T Consensus        84 ~a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW  163 (713)
T KOG2999|consen   84 YAKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSW  163 (713)
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeee
Confidence            4567888888988888888999999999988889999999999999999998732      3344444444433211000


Q ss_pred             HHHhcCCHHHHHHHHhcc-CChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 020640          237 EIGDLGGVSCMLRIIRES-TCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKR  315 (323)
Q Consensus       237 ~i~~~g~i~~Lv~ll~~~-~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~  315 (323)
                      ..+...+|.....+..-. -+..+-..|+..|-++...++. ....+.++--++.|+..++.++.+++.+|..++..+..
T Consensus       164 ~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~-~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~  242 (713)
T KOG2999|consen  164 ESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDT-LRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFR  242 (713)
T ss_pred             eecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChH-HHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHh
Confidence            011222333344333221 1245678899999999988865 45666788999999999999999999999999988765


Q ss_pred             c
Q 020640          316 T  316 (323)
Q Consensus       316 ~  316 (323)
                      -
T Consensus       243 ~  243 (713)
T KOG2999|consen  243 K  243 (713)
T ss_pred             h
Confidence            3

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=95.32  E-value=0.72  Score=46.07  Aligned_cols=147  Identities=16%  Similarity=0.174  Sum_probs=100.4

Q ss_pred             hHHHHHHHHhcCCchhHHHHHHHHHHHhccChhhHHHHhh----h--cC------CHHHHHHhhcccccCCCCCHHHHHH
Q 020640           31 DHFLSLLKKMSATLPDQTEAAKELRLLTKRMPSFRALFGE----S--HD------AIPQLLSPLSESKCENGINPNLQED   98 (323)
Q Consensus        31 ~~i~~Lv~~l~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~----~--~g------~i~~Lv~lL~~~~~~~~~~~~~~~~   98 (323)
                      +++..++..+....++..=....+.+.+..+.+.++.+.-    .  ..      ++..+.+=+.      ++|+.+|-.
T Consensus        38 dAmK~iIa~M~~G~dmssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lLavNti~kDl~------d~N~~iR~~  111 (757)
T COG5096          38 DAMKKIIAQMSLGEDMSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALLAVNTIQKDLQ------DPNEEIRGF  111 (757)
T ss_pred             HHHHHHHHHHhcCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhcc------CCCHHHHHH
Confidence            5667777777422234444455555555556666554221    0  10      1233333334      789999999


Q ss_pred             HHHHHHHhccccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhH
Q 020640           99 VITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSA  178 (323)
Q Consensus        99 a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~  178 (323)
                      |++++..+=.     ..+..  .+++.+.+++.++++.+++.|+-++..+=.-  .+....+.|.+..+..++.+.++.+
T Consensus       112 AlR~ls~l~~-----~el~~--~~~~~ik~~l~d~~ayVRk~Aalav~kly~l--d~~l~~~~g~~~~l~~l~~D~dP~V  182 (757)
T COG5096         112 ALRTLSLLRV-----KELLG--NIIDPIKKLLTDPHAYVRKTAALAVAKLYRL--DKDLYHELGLIDILKELVADSDPIV  182 (757)
T ss_pred             HHHHHHhcCh-----HHHHH--HHHHHHHHHccCCcHHHHHHHHHHHHHHHhc--CHhhhhcccHHHHHHHHhhCCCchH
Confidence            9998886621     23333  2678899999999999999999999998532  3445566788889999999999999


Q ss_pred             HHHHHHHHHHhccC
Q 020640          179 MKDVASAIFNLCIT  192 (323)
Q Consensus       179 ~~~al~aL~~L~~~  192 (323)
                      ..+|+.+|..+...
T Consensus       183 i~nAl~sl~~i~~e  196 (757)
T COG5096         183 IANALASLAEIDPE  196 (757)
T ss_pred             HHHHHHHHHHhchh
Confidence            99999999988554

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=95.24  E-value=0.23  Score=43.12  Aligned_cols=97  Identities=24%  Similarity=0.219  Sum_probs=79.2

Q ss_pred             HHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHH-hccccchhhhhhccCCcHHH
Q 020640           47 QTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLN-LSIHDNNKKLVAETPMVIPL  125 (323)
Q Consensus        47 ~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~-ls~~~~~~~~i~~~~g~i~~  125 (323)
                      ...|+..|.-++.-.+..|..|.+ ...++.|+++|..     ...+.++..++.+|.. |..++.|.+.+-+.+| +..
T Consensus       108 i~~aL~vLQGl~LLHp~Sr~lF~r-~~~m~lll~LL~~-----~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~G-l~~  180 (257)
T PF08045_consen  108 IALALRVLQGLCLLHPPSRKLFHR-EQNMELLLDLLSP-----SNPPAIQSACLDTLVCILLDSPENQRDFEELNG-LST  180 (257)
T ss_pred             HHHHHHHHHHHHHcCchHHHHHhh-hhhHHHHHHHhcc-----CCCchHHHHHHHHHHHHHHcChHHHHHHHHhCC-HHH
Confidence            456889999999999999999999 9999999999953     4578999999998875 4555568888888887 888


Q ss_pred             HHHHHhcC--CHHHHHHHHHHHHHhcC
Q 020640          126 LMDALRSG--TIETRSNAAAALFTLSA  150 (323)
Q Consensus       126 Lv~ll~~~--~~~~~~~a~~~L~~L~~  150 (323)
                      ++.++++.  +.+++..++..|+-...
T Consensus       181 v~~llk~~~~~~~~r~K~~EFL~fyl~  207 (257)
T PF08045_consen  181 VCSLLKSKSTDRELRLKCIEFLYFYLM  207 (257)
T ss_pred             HHHHHccccccHHHhHHHHHHHHHHHc
Confidence            99999875  56777777777766543

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.23  E-value=3.7  Score=40.99  Aligned_cols=248  Identities=13%  Similarity=0.107  Sum_probs=145.9

Q ss_pred             chhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchhhhhhccCCcH
Q 020640           44 LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVI  123 (323)
Q Consensus        44 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i  123 (323)
                      +.+|..|+.+|-.+-.-+++.+..+.+      .+=.+|.      +.++-+.-.|+.+...++-  +.-..|.+   ..
T Consensus       157 ~yVRk~AA~AIpKLYsLd~e~k~qL~e------~I~~LLa------D~splVvgsAv~AF~evCP--erldLIHk---ny  219 (968)
T KOG1060|consen  157 PYVRKTAAHAIPKLYSLDPEQKDQLEE------VIKKLLA------DRSPLVVGSAVMAFEEVCP--ERLDLIHK---NY  219 (968)
T ss_pred             HHHHHHHHHhhHHHhcCChhhHHHHHH------HHHHHhc------CCCCcchhHHHHHHHHhch--hHHHHhhH---HH
Confidence            678888999998888777776654444      2233444      6677888888887776653  22223322   25


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhcCCC---Cc----------------------hhhhhccCChHHHH----HHhhhc
Q 020640          124 PLLMDALRSGTIETRSNAAAALFTLSALD---SN----------------------KEVIGKSGALKPLI----DLLDEG  174 (323)
Q Consensus       124 ~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~---~~----------------------~~~i~~~g~i~~Lv----~lL~~~  174 (323)
                      +.+.++|..-++=.+...+..|..-|.+.   +.                      +..++..-=+..|+    .+|.+.
T Consensus       220 rklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~  299 (968)
T KOG1060|consen  220 RKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSR  299 (968)
T ss_pred             HHHHhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcC
Confidence            56666665544333444444443333210   10                      01111111122333    345667


Q ss_pred             CHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcC-chHHHHHHHHHHHhcC------------------HH--
Q 020640          175 HQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG-VHVDELLAILAMLSTN------------------HR--  233 (323)
Q Consensus       175 ~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~-~~~~~a~~~L~~l~~~------------------~~--  233 (323)
                      ++.+...++.+.|.++--.+.      .+.+..|+++|.+. .++...+..++-++.-                  +.  
T Consensus       300 n~sVVmA~aql~y~lAP~~~~------~~i~kaLvrLLrs~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~v  373 (968)
T KOG1060|consen  300 NPSVVMAVAQLFYHLAPKNQV------TKIAKALVRLLRSNREVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQV  373 (968)
T ss_pred             CcHHHHHHHhHHHhhCCHHHH------HHHHHHHHHHHhcCCcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHH
Confidence            899999999999999753321      13466899999876 5666666555555531                  11  


Q ss_pred             ------HHHHHHhcCCHHHHH----HHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHH
Q 020640          234 ------AVEEIGDLGGVSCML----RIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAK  303 (323)
Q Consensus       234 ------~~~~i~~~g~i~~Lv----~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~  303 (323)
                            .-..+++++-++.++    ..+++.+ ..+-..++.++..++...-    .+  ..-|+..|+.++.+.+.-+-
T Consensus       374 k~lKleiLs~La~esni~~ILrE~q~YI~s~d-~~faa~aV~AiGrCA~~~~----sv--~~tCL~gLv~Llsshde~Vv  446 (968)
T KOG1060|consen  374 KILKLEILSNLANESNISEILRELQTYIKSSD-RSFAAAAVKAIGRCASRIG----SV--TDTCLNGLVQLLSSHDELVV  446 (968)
T ss_pred             HHHHHHHHHHHhhhccHHHHHHHHHHHHhcCc-hhHHHHHHHHHHHHHHhhC----ch--hhHHHHHHHHHHhcccchhH
Confidence                  112223444344433    3444333 3345555566665544331    22  46799999999999999999


Q ss_pred             HHHHHHHHHHhcchhhcc
Q 020640          304 RKATGILERLKRTVNLTH  321 (323)
Q Consensus       304 ~~A~~~L~~l~~~~~~~~  321 (323)
                      ..|...++.|-...+..|
T Consensus       447 ~eaV~vIk~Llq~~p~~h  464 (968)
T KOG1060|consen  447 AEAVVVIKRLLQKDPAEH  464 (968)
T ss_pred             HHHHHHHHHHHhhChHHH
Confidence            999999999998888877

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=95.22  E-value=1.7  Score=39.12  Aligned_cols=178  Identities=15%  Similarity=0.146  Sum_probs=96.7

Q ss_pred             CCHHHHHHHHHHHHHhccccchhhhhhc-cCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC---CCchhhhhccCChHH
Q 020640           91 INPNLQEDVITTLLNLSIHDNNKKLVAE-TPMVIPLLMDALRSGTIETRSNAAAALFTLSAL---DSNKEVIGKSGALKP  166 (323)
Q Consensus        91 ~~~~~~~~a~~~L~~ls~~~~~~~~i~~-~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~---~~~~~~i~~~g~i~~  166 (323)
                      .....++.++..+.++.........+.. ...++..+.+.++.+..+-+..|+.++.-++..   .+....+.+ ...|.
T Consensus        55 K~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~-~~~~~  133 (309)
T PF05004_consen   55 KSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFE-ELKPV  133 (309)
T ss_pred             cCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHH-HHHHH
Confidence            3456677777766655433221111111 112455667777777766667787877777644   234555554 36788


Q ss_pred             HHHHhhhcC--HhHHHHHHHHHHHhccCCc-hhHHHHh-hCchHHHH--HHhhc-C-----------chHHHHHHHHHHH
Q 020640          167 LIDLLDEGH--QSAMKDVASAIFNLCITHE-NKARAVR-DGGVSVIL--KKIMD-G-----------VHVDELLAILAML  228 (323)
Q Consensus       167 Lv~lL~~~~--~~~~~~al~aL~~L~~~~~-~~~~i~~-~g~v~~Lv--~ll~~-~-----------~~~~~a~~~L~~l  228 (323)
                      |.+.+.+++  ..++..++.+|.-++.... .-..+.+ ...+..+.  ...+. +           .+...|+..-.-|
T Consensus       134 L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lL  213 (309)
T PF05004_consen  134 LKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALL  213 (309)
T ss_pred             HHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHH
Confidence            888888753  4566677777777655321 1111110 01222111  11221 1           2445555444444


Q ss_pred             hc-CHHH-HHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHhc
Q 020640          229 ST-NHRA-VEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTIC  271 (323)
Q Consensus       229 ~~-~~~~-~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~  271 (323)
                      .. .+.. ..... ...++.|+.+|.+. +..+|.+|..+|.-|.
T Consensus       214 lt~~~~~~~~~~~-~~~~~~l~~lL~s~-d~~VRiAAGEaiAll~  256 (309)
T PF05004_consen  214 LTTLPDSKLEDLL-EEALPALSELLDSD-DVDVRIAAGEAIALLY  256 (309)
T ss_pred             HhcCCHHHHHHHH-HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHH
Confidence            44 2331 22222 24589999999965 4889999888887663

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.16  E-value=0.17  Score=49.94  Aligned_cols=153  Identities=18%  Similarity=0.131  Sum_probs=115.8

Q ss_pred             hHHHHHHHHhcCC--chhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhcc
Q 020640           31 DHFLSLLKKMSAT--LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSI  108 (323)
Q Consensus        31 ~~i~~Lv~~l~~~--~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~  108 (323)
                      ++++.+.+.++.+  ....-+++.++.|++..+...|..+.+ .-+++.+-.++.      .+++..|..++..+.||..
T Consensus       541 ~v~~~~~s~~~~d~~~~en~E~L~altnLas~s~s~r~~i~k-e~~~~~ie~~~~------ee~~~lqraa~e~~~NLl~  613 (748)
T KOG4151|consen  541 EVVKPLDSALHNDEKGLENFEALEALTNLASISESDRQKILK-EKALGKIEELMT------EENPALQRAALESIINLLW  613 (748)
T ss_pred             hhhhhhcchhhhhHHHHHHHHHHHHhhcccCcchhhHHHHHH-HhcchhhHHHhh------cccHHHHHHHHHHHHHHHh
Confidence            4677777777544  334567999999999988888888887 667777777766      6789999999999999999


Q ss_pred             ccc-hhhhhhc-cCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCc-hhhhhc-cCChHHHHHHhhhcCHhHHHHHHH
Q 020640          109 HDN-NKKLVAE-TPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSN-KEVIGK-SGALKPLIDLLDEGHQSAMKDVAS  184 (323)
Q Consensus       109 ~~~-~~~~i~~-~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~-~~~i~~-~g~i~~Lv~lL~~~~~~~~~~al~  184 (323)
                      ++. ....+++ +.+ .+.....+....+.....+++++..++...++ +..+.+ ......++.++.+++..++...+.
T Consensus       614 ~~~~~e~si~e~~~~-l~~w~~~~e~~~E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~  692 (748)
T KOG4151|consen  614 SPLLYERSIVEYKDR-LKLWNLNLEVADEKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLV  692 (748)
T ss_pred             hHHHHHHHhhccccC-chHHHHHHHhhhhHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhh
Confidence            888 4556665 344 66666666667788888888888877655554 443444 667888999999999999988888


Q ss_pred             HHHHhcc
Q 020640          185 AIFNLCI  191 (323)
Q Consensus       185 aL~~L~~  191 (323)
                      ...|+..
T Consensus       693 ~~ln~~~  699 (748)
T KOG4151|consen  693 IILNLFE  699 (748)
T ss_pred             hhhhHHH
Confidence            8877543

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=95.09  E-value=0.18  Score=40.53  Aligned_cols=143  Identities=17%  Similarity=0.039  Sum_probs=93.4

Q ss_pred             HHHHHHHhc---CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhcc-
Q 020640           33 FLSLLKKMS---ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSI-  108 (323)
Q Consensus        33 i~~Lv~~l~---~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~-  108 (323)
                      +..++..|.   ...++|..+..++..+-   +..+..+.+  -+-+.+-..+..      .+.+-...+..++..+-- 
T Consensus         5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l---~~~~~~~~~--~~~~~i~~~~~~------~~~d~~i~~~~~l~~lfp~   73 (157)
T PF11701_consen    5 LDTLLTSLDMLRQPEEVRSHALVILSKLL---DAAREEFKE--KISDFIESLLDE------GEMDSLIIAFSALTALFPG   73 (157)
T ss_dssp             CCHHHHHHHCTTTSCCHHHHHHHHHHHHH---HHHHHHHHH--HHHHHHHHHHCC------HHCCHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHhcccCCCHhHHHHHHHHHHHHH---HHhHHHHHH--HHHHHHHHHHcc------ccchhHHHHHHHHHHHhCC
Confidence            445555553   34778888988888885   334444444  122223333332      223456677777776644 


Q ss_pred             ccchhhhhhccCCcHHHHHHHHh--cCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhh-cCHh-HHHHHHH
Q 020640          109 HDNNKKLVAETPMVIPLLMDALR--SGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDE-GHQS-AMKDVAS  184 (323)
Q Consensus       109 ~~~~~~~i~~~~g~i~~Lv~ll~--~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~-~~~~al~  184 (323)
                      .++-...+....|+.+.++.+..  ..+...+..++.+|..-|.+.+.|..+.+ .+++-|-++.+. ++.. ++..|+-
T Consensus        74 ~~dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~-~~~~~L~~~~~~~~~~~~ir~~A~v  152 (157)
T PF11701_consen   74 PPDVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISK-NYVSWLKELYKNSKDDSEIRVLAAV  152 (157)
T ss_dssp             THHHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHH-HCHHHHHHHTTTCC-HH-CHHHHHH
T ss_pred             CHHHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHH-HHHHHHHHHHccccchHHHHHHHHH
Confidence            34456677777789999999998  77888899999988888876666666555 468999999864 4555 6777776


Q ss_pred             HHH
Q 020640          185 AIF  187 (323)
Q Consensus       185 aL~  187 (323)
                      .|.
T Consensus       153 ~L~  155 (157)
T PF11701_consen  153 GLC  155 (157)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            664

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=95.09  E-value=0.67  Score=48.00  Aligned_cols=263  Identities=14%  Similarity=0.143  Sum_probs=129.3

Q ss_pred             HHHHHHHhc--CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhcc--
Q 020640           33 FLSLLKKMS--ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSI--  108 (323)
Q Consensus        33 i~~Lv~~l~--~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~--  108 (323)
                      +..+-..+.  ...+.|.+|+..|..++....+  +...+  -++|.++.++.      +....+|..|+.+|..+-.  
T Consensus       424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~d--e~~LD--RVlPY~v~l~~------Ds~a~Vra~Al~Tlt~~L~~V  493 (1431)
T KOG1240|consen  424 VSVLTSCIRALKTIQTKLAALELLQELSTYIDD--EVKLD--RVLPYFVHLLM------DSEADVRATALETLTELLALV  493 (1431)
T ss_pred             HHHHHHHHHhhhcchhHHHHHHHHHHHhhhcch--HHHHh--hhHHHHHHHhc------CchHHHHHHHHHHHHHHHhhc
Confidence            344444443  3467899999999999965432  22233  47999999999      7788999999998876532  


Q ss_pred             ---ccchhhhhhccCCcHHHHHHHHhcC-CHHHHHHHHHHHHHhcCC------------------CCchhhhhc---cC-
Q 020640          109 ---HDNNKKLVAETPMVIPLLMDALRSG-TIETRSNAAAALFTLSAL------------------DSNKEVIGK---SG-  162 (323)
Q Consensus       109 ---~~~~~~~i~~~~g~i~~Lv~ll~~~-~~~~~~~a~~~L~~L~~~------------------~~~~~~i~~---~g-  162 (323)
                         ...+...+.+.  ++|.|-.++.+. ...++..-+..|..||..                  +.+-....+   .. 
T Consensus       494 r~~~~~daniF~eY--lfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~  571 (1431)
T KOG1240|consen  494 RDIPPSDANIFPEY--LFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTE  571 (1431)
T ss_pred             cCCCcccchhhHhh--hhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchH
Confidence               22244445553  677777777663 333333334444443321                  000000000   00 


Q ss_pred             ------ChHHHH-HHhhhcCHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcCch--HHHHHHHHHHHhcCHH
Q 020640          163 ------ALKPLI-DLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDGVH--VDELLAILAMLSTNHR  233 (323)
Q Consensus       163 ------~i~~Lv-~lL~~~~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~~~--~~~a~~~L~~l~~~~~  233 (323)
                            .++.++ .+|.+.++-++..-+..|.-||....-..  .+.=.++.|+.+|.+.+-  +-.=...+.-+|.+= 
T Consensus       572 ~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~k--sND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~V-  648 (1431)
T KOG1240|consen  572 LQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEK--SNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFV-  648 (1431)
T ss_pred             HHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcc--cccchHHHHHHHhcCccHHHHHHHHhhccceEEEE-
Confidence                  111111 12222233444444444444443221000  000134445555544421  111111111111210 


Q ss_pred             HHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 020640          234 AVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERL  313 (323)
Q Consensus       234 ~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l  313 (323)
                       -..=++++.+|.|.+-+.++. +-+...|+++|..|+..+  ..++.. --.+++-..-++-+.+.=+++.+.+++...
T Consensus       649 -G~rs~seyllPLl~Q~ltD~E-E~Viv~aL~~ls~Lik~~--ll~K~~-v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~  723 (1431)
T KOG1240|consen  649 -GWRSVSEYLLPLLQQGLTDGE-EAVIVSALGSLSILIKLG--LLRKPA-VKDILQDVLPLLCHPNLWIRRAVLGIIAAI  723 (1431)
T ss_pred             -eeeeHHHHHHHHHHHhccCcc-hhhHHHHHHHHHHHHHhc--ccchHH-HHHHHHhhhhheeCchHHHHHHHHHHHHHH
Confidence             000123445666666666554 667777777777777654  222221 223333333345666777777777776655


Q ss_pred             hc
Q 020640          314 KR  315 (323)
Q Consensus       314 ~~  315 (323)
                      .+
T Consensus       724 ~~  725 (1431)
T KOG1240|consen  724 AR  725 (1431)
T ss_pred             Hh
Confidence            43

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=95.01  E-value=2.5  Score=37.81  Aligned_cols=185  Identities=14%  Similarity=0.103  Sum_probs=119.0

Q ss_pred             hHHHHHH-HHh-cCCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhcc
Q 020640           31 DHFLSLL-KKM-SATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSI  108 (323)
Q Consensus        31 ~~i~~Lv-~~l-~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~  108 (323)
                      +.+..|+ .-+ +.++.+|..|+.+|.-.+.-+.+..    .  ..++.+...++      .++..++..|+.++.-+..
T Consensus        26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a----~--~~l~l~~~~~~------~~~~~v~~~al~~l~Dll~   93 (298)
T PF12719_consen   26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELA----K--EHLPLFLQALQ------KDDEEVKITALKALFDLLL   93 (298)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHH----H--HHHHHHHHHHH------hCCHHHHHHHHHHHHHHHH
Confidence            4566655 333 3668999999999999998765432    2  23666777776      4588999999999987643


Q ss_pred             cc--chhhhhh------ccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhh----cCH
Q 020640          109 HD--NNKKLVA------ETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDE----GHQ  176 (323)
Q Consensus       109 ~~--~~~~~i~------~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~----~~~  176 (323)
                      ..  +.-....      ....+.+.+.+.+.+.+++++..++..+..|-...-...   ...++..|+-+--+    ++.
T Consensus        94 ~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~  170 (298)
T PF12719_consen   94 THGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQ  170 (298)
T ss_pred             HcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcH
Confidence            21  1111111      112367778888888999999999999999865443222   13345555544333    345


Q ss_pred             hHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcCch---------HHHHHHHHHHHhc
Q 020640          177 SAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDGVH---------VDELLAILAMLST  230 (323)
Q Consensus       177 ~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~~~---------~~~a~~~L~~l~~  230 (323)
                      ..+..-...+-..|......+..+....++.+-.+.+....         -......+..++.
T Consensus       171 ~LrQ~L~~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~~~~~~~~~~~~v~~~~v~~~lv~lt~  233 (298)
T PF12719_consen  171 RLRQCLSVFFPVYASSSPENQERLAEAFLPTLRTLSNAPDELDSPLAMVSPSQVASFLVDLTD  233 (298)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhCcccccCchhhCCHHHHHHHHHHHCC
Confidence            66666666777778877766676667688887777764311         3345555555555

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.99  E-value=2  Score=42.57  Aligned_cols=54  Identities=17%  Similarity=0.107  Sum_probs=31.1

Q ss_pred             CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHh
Q 020640           42 ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNL  106 (323)
Q Consensus        42 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~l  106 (323)
                      .+..+|++|+.++..+-+....   .+   ..+-+.+-++|.+     ..|+...++|...|...
T Consensus       146 rhsYVRrNAilaifsIyk~~~~---L~---pDapeLi~~fL~~-----e~DpsCkRNAFi~L~~~  199 (948)
T KOG1058|consen  146 RHSYVRRNAILAIFSIYKNFEH---LI---PDAPELIESFLLT-----EQDPSCKRNAFLMLFTT  199 (948)
T ss_pred             cchhhhhhhheeehhHHhhhhh---hc---CChHHHHHHHHHh-----ccCchhHHHHHHHHHhc
Confidence            3466788888888777753221   11   2334444455543     45677777776666543

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=94.97  E-value=3.1  Score=38.65  Aligned_cols=209  Identities=12%  Similarity=0.105  Sum_probs=127.2

Q ss_pred             HHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhcc-----ccchhhhhhccCCcH
Q 020640           49 EAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSI-----HDNNKKLVAETPMVI  123 (323)
Q Consensus        49 ~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~-----~~~~~~~i~~~~g~i  123 (323)
                      .|+..|-.+....+..-..|.+ .+|+..+++.++.         ++.. +..- .....     ..+.+..... +   
T Consensus         3 ~av~~ld~~~~~~~~a~~~f~~-~~G~~~li~rl~~---------Ev~~-~~~~-~~~~~~~~~~~~~~~~~~~~-~---   66 (379)
T PF06025_consen    3 RAVRFLDTFIDSSPDAFAAFRN-LNGLDILIDRLQY---------EVDF-ALEE-NKNEEAGSGIPPEYKESSVD-G---   66 (379)
T ss_pred             HHHHHHHHHHhccHHHHHHHHh-CCCHHHHHHHHHH---------HHHH-HHhc-ccccCCCCCCCCCccccccc-c---
Confidence            4667777777666666778888 9999999999982         1111 1110 00000     0001111110 0   


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhcC-CCCc---hhhhhc-cCChHHHHHHhhhc---CHhHHHHHHHHHHHhccCCch
Q 020640          124 PLLMDALRSGTIETRSNAAAALFTLSA-LDSN---KEVIGK-SGALKPLIDLLDEG---HQSAMKDVASAIFNLCITHEN  195 (323)
Q Consensus       124 ~~Lv~ll~~~~~~~~~~a~~~L~~L~~-~~~~---~~~i~~-~g~i~~Lv~lL~~~---~~~~~~~al~aL~~L~~~~~~  195 (323)
                          ..+........+..++++..+.. ....   -..+.+ ...+..|-.+++..   .+.+...|+..+..+-.+++.
T Consensus        67 ----~~i~~~r~~llK~lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT  142 (379)
T PF06025_consen   67 ----YSISYQRQQLLKSLLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPT  142 (379)
T ss_pred             ----cccCHHHHHHHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCc
Confidence                00011122334444445544444 2222   233444 33445555566653   567888999999999888877


Q ss_pred             hHHHH-hhCchHHHHHHhh-cC-----chHHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHhccCC------hhHHHH
Q 020640          196 KARAV-RDGGVSVILKKIM-DG-----VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTC------DRNKEN  262 (323)
Q Consensus       196 ~~~i~-~~g~v~~Lv~ll~-~~-----~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~~~~------~~~~~~  262 (323)
                      ...++ +.|.++.+++.+. .+     ++....-.++..||.++++.+.+.+.+.++.+++++.+.+.      .+.-..
T Consensus       143 ~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~~Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~  222 (379)
T PF06025_consen  143 SFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLNNRGLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASN  222 (379)
T ss_pred             hhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcCHHHHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHH
Confidence            66655 5699999999888 54     33444457788899999999999999999999999985321      123334


Q ss_pred             HHHHHHHhcccChHh
Q 020640          263 CIAILHTICLSDRTK  277 (323)
Q Consensus       263 a~~~L~~L~~~~~~~  277 (323)
                      --..+-.|.++.|..
T Consensus       223 lG~~~DEL~RH~p~L  237 (379)
T PF06025_consen  223 LGNSFDELMRHHPSL  237 (379)
T ss_pred             HHHHHHHHHccCHHH
Confidence            556677888888764

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=94.95  E-value=0.52  Score=38.82  Aligned_cols=110  Identities=18%  Similarity=0.232  Sum_probs=75.9

Q ss_pred             chHHHHHHhhcCchHHHHHHHHHHHh-cCH-HHHHHHHhcCCHHHHHHHHhcc--------CChhHHHHHHHHHHHhccc
Q 020640          204 GVSVILKKIMDGVHVDELLAILAMLS-TNH-RAVEEIGDLGGVSCMLRIIRES--------TCDRNKENCIAILHTICLS  273 (323)
Q Consensus       204 ~v~~Lv~ll~~~~~~~~a~~~L~~l~-~~~-~~~~~i~~~g~i~~Lv~ll~~~--------~~~~~~~~a~~~L~~L~~~  273 (323)
                      ....+++.+.++......+.-|.-.- ..+ .=.+.|++.||+..|+.+|..-        ........++.++..+...
T Consensus        67 ~p~~~i~~L~~~~~~~~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~  146 (187)
T PF06371_consen   67 SPEWYIKKLKSRPSTSKILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNT  146 (187)
T ss_dssp             HHHHHHHHHTTT--HHHHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSS
T ss_pred             hHHHHHHHHHccCccHHHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHcc
Confidence            34456666666543333333333222 222 4456678889999999888651        1235677899999999988


Q ss_pred             ChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHh
Q 020640          274 DRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLK  314 (323)
Q Consensus       274 ~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~  314 (323)
                      ..+ +..++...+++..|...+.+.+..++..|..+|..+|
T Consensus       147 ~~G-~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc  186 (187)
T PF06371_consen  147 KYG-LEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC  186 (187)
T ss_dssp             HHH-HHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred             HHH-HHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence            866 6788889999999999999999999999999998876

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=94.94  E-value=4.4  Score=41.79  Aligned_cols=238  Identities=15%  Similarity=0.127  Sum_probs=134.1

Q ss_pred             hHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccc
Q 020640           31 DHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIH  109 (323)
Q Consensus        31 ~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~  109 (323)
                      +++..|++.++ .|..++=.|+..+..++...|   ..+.+  .+|...++++..     .+++..-..|+-+|..|+..
T Consensus       341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp---~~Lad--~vi~svid~~~p-----~e~~~aWHgacLaLAELA~r  410 (1133)
T KOG1943|consen  341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP---PELAD--QVIGSVIDLFNP-----AEDDSAWHGACLALAELALR  410 (1133)
T ss_pred             HHHHHHHHhccCCcchhhHHHHHHHHHHHccCc---HHHHH--HHHHHHHHhcCc-----CCchhHHHHHHHHHHHHHhc
Confidence            56666666665 567788899999999998777   34444  467778886553     33566777899999999864


Q ss_pred             cchhhhhhccCCcHHHHHHHHh--------cCCHHHHHHHHHHHHHhcCCCCc--hhhhhccCChHHHH-HHhhhcCHhH
Q 020640          110 DNNKKLVAETPMVIPLLMDALR--------SGTIETRSNAAAALFTLSALDSN--KEVIGKSGALKPLI-DLLDEGHQSA  178 (323)
Q Consensus       110 ~~~~~~i~~~~g~i~~Lv~ll~--------~~~~~~~~~a~~~L~~L~~~~~~--~~~i~~~g~i~~Lv-~lL~~~~~~~  178 (323)
                      ---....+.  .++|.++.-|.        +....++..|+.++|.++..-+.  .+.+... ..+.|+ ..+-+.+..+
T Consensus       411 GlLlps~l~--dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~-L~s~LL~~AlFDrevnc  487 (1133)
T KOG1943|consen  411 GLLLPSLLE--DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQS-LASALLIVALFDREVNC  487 (1133)
T ss_pred             CCcchHHHH--HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHH-HHHHHHHHHhcCchhhH
Confidence            433333333  25666666552        12467888999999999743221  1222211 222222 2334456778


Q ss_pred             HHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcC-----chHHHHHHHHHHHhcCHHHHHHHHhc-CCHHHHHHHHh
Q 020640          179 MKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG-----VHVDELLAILAMLSTNHRAVEEIGDL-GGVSCMLRIIR  252 (323)
Q Consensus       179 ~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~-----~~~~~a~~~L~~l~~~~~~~~~i~~~-g~i~~Lv~ll~  252 (323)
                      +..|..|+......         .|-.|.=+.++..-     ..+.+|-.         +....+.+. |....+++.+-
T Consensus       488 RRAAsAAlqE~VGR---------~~n~p~Gi~Lis~~dy~sV~~rsNcy~---------~l~~~ia~~~~y~~~~f~~L~  549 (1133)
T KOG1943|consen  488 RRAASAALQENVGR---------QGNFPHGISLISTIDYFSVTNRSNCYL---------DLCVSIAEFSGYREPVFNHLL  549 (1133)
T ss_pred             hHHHHHHHHHHhcc---------CCCCCCchhhhhhcchhhhhhhhhHHH---------HHhHHHHhhhhHHHHHHHHHH
Confidence            88888888655332         22222222222211     12222222         222222221 33333333222


Q ss_pred             c---cC-ChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHH
Q 020640          253 E---ST-CDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKR  304 (323)
Q Consensus       253 ~---~~-~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~  304 (323)
                      .   .+ +..+++.++.+|..|+...++.   +  .....++|+.-..+.+...+.
T Consensus       550 t~Kv~HWd~~irelaa~aL~~Ls~~~pk~---~--a~~~L~~lld~~ls~~~~~r~  600 (1133)
T KOG1943|consen  550 TKKVCHWDVKIRELAAYALHKLSLTEPKY---L--ADYVLPPLLDSTLSKDASMRH  600 (1133)
T ss_pred             hcccccccHHHHHHHHHHHHHHHHhhHHh---h--cccchhhhhhhhcCCChHHhh
Confidence            1   12 3778999999999988887652   2  235666666665555544443

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.89  E-value=2.7  Score=39.65  Aligned_cols=240  Identities=12%  Similarity=0.007  Sum_probs=133.7

Q ss_pred             cCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccc-hhhhhhccCCcHHHHHHHHhc-CCHHHHHHHHHHHHHhc
Q 020640           72 HDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDN-NKKLVAETPMVIPLLMDALRS-GTIETRSNAAAALFTLS  149 (323)
Q Consensus        72 ~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~-~~~~i~~~~g~i~~Lv~ll~~-~~~~~~~~a~~~L~~L~  149 (323)
                      .|.+..++..|....-  +++..++..|++.|.|.+.... ........  .+..++.-|.+ .+.+++-.++.+|..+.
T Consensus       253 ~~lL~s~~~~la~ka~--dp~a~~r~~a~r~L~~~as~~P~kv~th~~~--~ldaii~gL~D~~~~~V~leam~~Lt~v~  328 (533)
T KOG2032|consen  253 TGLLGSVLLSLANKAT--DPSAKSRGMACRGLGNTASGAPDKVRTHKTT--QLDAIIRGLYDDLNEEVQLEAMKCLTMVL  328 (533)
T ss_pred             cccHHHHHHHHHHhcc--CchhHHHHHHHHHHHHHhccCcHHHHHhHHH--HHHHHHHHHhcCCccHHHHHHHHHHHHHH
Confidence            5555555544432211  5677899999999999987733 33333222  35555555544 46888888888888876


Q ss_pred             CCCCchhhhhc-cCChHHHHHHhhhcCHhHHHHHHHHHHHhccCCch--hHHHHhh--CchHHHHHHhhcCch-HHHHHH
Q 020640          150 ALDSNKEVIGK-SGALKPLIDLLDEGHQSAMKDVASAIFNLCITHEN--KARAVRD--GGVSVILKKIMDGVH-VDELLA  223 (323)
Q Consensus       150 ~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~--~~~i~~~--g~v~~Lv~ll~~~~~-~~~a~~  223 (323)
                      ..-.+....-- ..+.-.+..+..+.+++++..+..+...|+.....  +..+.+.  +...+++-.|.+..+ ...||+
T Consensus       329 ~~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~ACr  408 (533)
T KOG2032|consen  329 EKASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARACR  408 (533)
T ss_pred             HhhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHHHH
Confidence            43332221111 23445666677888899999999888888765533  3333432  334445555555533 556777


Q ss_pred             HHHHHhcCHHHHHHH---Hh---cC------------------CHHHHHHHHhc-------cCChhHHHHHHHHHHHhcc
Q 020640          224 ILAMLSTNHRAVEEI---GD---LG------------------GVSCMLRIIRE-------STCDRNKENCIAILHTICL  272 (323)
Q Consensus       224 ~L~~l~~~~~~~~~i---~~---~g------------------~i~~Lv~ll~~-------~~~~~~~~~a~~~L~~L~~  272 (323)
                      .....|.-.-.+++.   .+   .+                  ..+.+..++.+       ++.+.+++.+...-.+...
T Consensus       409 ~~~~~c~p~l~rke~~~~~q~~ld~~~~~~q~Fyn~~c~~L~~i~~d~l~~~~t~~~~~f~sswe~vr~aavl~t~~~vd  488 (533)
T KOG2032|consen  409 SELRTCYPNLVRKELYHLFQESLDTDMARFQAFYNQWCIQLNHIHPDILMLLLTEDQHIFSSSWEQVREAAVLKTTRSVD  488 (533)
T ss_pred             HHHHhcCchhHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHhhhCHHHHHHHHHhchhheecchHHHHHHHHHHHHHHHH
Confidence            666666532222221   11   01                  11111111111       1224455555554444444


Q ss_pred             cChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 020640          273 SDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKR  315 (323)
Q Consensus       273 ~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~  315 (323)
                      +-......-.........|..+.+..-+++++.|..++..+.+
T Consensus       489 ~l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~  531 (533)
T KOG2032|consen  489 SLVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLSV  531 (533)
T ss_pred             HhHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHhh
Confidence            3333223333334456677777788899999999999887764

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=94.86  E-value=0.23  Score=34.28  Aligned_cols=64  Identities=17%  Similarity=0.132  Sum_probs=55.7

Q ss_pred             HHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcC---chHHHHHHHHHHHhcCHHHHHHHHhcC
Q 020640          179 MKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG---VHVDELLAILAMLSTNHRAVEEIGDLG  242 (323)
Q Consensus       179 ~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~---~~~~~a~~~L~~l~~~~~~~~~i~~~g  242 (323)
                      .+.+++++.+++..+.....+.+.+.++.++++....   .+|-.|..+|.-++...++.+.+-+.|
T Consensus         4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~g   70 (73)
T PF14668_consen    4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELG   70 (73)
T ss_pred             HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence            5679999999999888777777779999999998865   679999999999999999999887765

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=94.82  E-value=0.88  Score=37.33  Aligned_cols=93  Identities=22%  Similarity=0.200  Sum_probs=71.4

Q ss_pred             CchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchhhhhhccCCc
Q 020640           43 TLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMV  122 (323)
Q Consensus        43 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~  122 (323)
                      ++.+|.+++.++..++..-+.    +.+  ..++.+...|+      ++++.++..|+.+|..|-..+--+.    .|..
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~~----~ve--~~~~~l~~~L~------D~~~~VR~~al~~Ls~Li~~d~ik~----k~~l   64 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYPN----LVE--PYLPNLYKCLR------DEDPLVRKTALLVLSHLILEDMIKV----KGQL   64 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCcH----HHH--hHHHHHHHHHC------CCCHHHHHHHHHHHHHHHHcCceee----hhhh
Confidence            467899999999999975443    333  46788999999      8899999999999999865432111    1222


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHhcCC
Q 020640          123 IPLLMDALRSGTIETRSNAAAALFTLSAL  151 (323)
Q Consensus       123 i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~  151 (323)
                      +..++.++.+++++++..|...+..+...
T Consensus        65 ~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~   93 (178)
T PF12717_consen   65 FSRILKLLVDENPEIRSLARSFFSELLKK   93 (178)
T ss_pred             hHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Confidence            36677888999999999999999999765

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=94.61  E-value=0.21  Score=40.21  Aligned_cols=146  Identities=16%  Similarity=0.144  Sum_probs=93.8

Q ss_pred             CCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-
Q 020640           73 DAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSAL-  151 (323)
Q Consensus        73 g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~-  151 (323)
                      ..++.++..|...    ...++++..++-++..+-  +..+....+.  +-+.+-..+..++.+....++.++..|-.. 
T Consensus         3 ~~l~~lL~~L~~~----~~~~~~r~~a~v~l~k~l--~~~~~~~~~~--~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~   74 (157)
T PF11701_consen    3 DELDTLLTSLDML----RQPEEVRSHALVILSKLL--DAAREEFKEK--ISDFIESLLDEGEMDSLIIAFSALTALFPGP   74 (157)
T ss_dssp             CCCCHHHHHHHCT----TTSCCHHHHHHHHHHHHH--HHHHHHHHHH--HHHHHHHHHCCHHCCHHHHHHHHHHHHCTTT
T ss_pred             HHHHHHHHHhccc----CCCHhHHHHHHHHHHHHH--HHhHHHHHHH--HHHHHHHHHccccchhHHHHHHHHHHHhCCC
Confidence            3455566666521    245678888888887762  3344444432  344455555555555677778888877533 


Q ss_pred             CCchhhh-hccCChHHHHHHhh--hcCHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcC---c-hHHHHHHH
Q 020640          152 DSNKEVI-GKSGALKPLIDLLD--EGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG---V-HVDELLAI  224 (323)
Q Consensus       152 ~~~~~~i-~~~g~i~~Lv~lL~--~~~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~---~-~~~~a~~~  224 (323)
                      ++....+ ...|.++.++.++.  .++..+...++.+|..=|.+...|..+.+ .+++.|-++++.+   . ++..|+-.
T Consensus        75 ~dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~-~~~~~L~~~~~~~~~~~~ir~~A~v~  153 (157)
T PF11701_consen   75 PDVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISK-NYVSWLKELYKNSKDDSEIRVLAAVG  153 (157)
T ss_dssp             HHHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHH-HCHHHHHHHTTTCC-HH-CHHHHHHH
T ss_pred             HHHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHH-HHHHHHHHHHccccchHHHHHHHHHH
Confidence            3444444 45899999999999  67888999999998775554444444554 4899999999644   2 66667666


Q ss_pred             HHH
Q 020640          225 LAM  227 (323)
Q Consensus       225 L~~  227 (323)
                      |+.
T Consensus       154 L~K  156 (157)
T PF11701_consen  154 LCK  156 (157)
T ss_dssp             HHH
T ss_pred             Hhc
Confidence            653

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=94.60  E-value=5.5  Score=40.40  Aligned_cols=155  Identities=15%  Similarity=0.100  Sum_probs=110.1

Q ss_pred             hHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccc
Q 020640           31 DHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIH  109 (323)
Q Consensus        31 ~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~  109 (323)
                      +.+.-|+.... .+.++-.--..+|...++-+++......  .-..|.++.+...+    ++||.+...+-.++..++..
T Consensus       530 ~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~--skI~P~~i~lF~k~----s~DP~V~~~~qd~f~el~q~  603 (1005)
T KOG2274|consen  530 MILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASME--SKICPLTINLFLKY----SEDPQVASLAQDLFEELLQI  603 (1005)
T ss_pred             HHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhh--cchhHHHHHHHHHh----cCCchHHHHHHHHHHHHHHH
Confidence            45555555554 3345555566777888877776543333  45777778777666    77899999888888899887


Q ss_pred             cchhhhhhccCCcHHHHHHHHhcCC----HHHHHHHHHHHHHhcCC-CCchhhhhccCChHHHHHH-hhhcCHhHHHHHH
Q 020640          110 DNNKKLVAETPMVIPLLMDALRSGT----IETRSNAAAALFTLSAL-DSNKEVIGKSGALKPLIDL-LDEGHQSAMKDVA  183 (323)
Q Consensus       110 ~~~~~~i~~~~g~i~~Lv~ll~~~~----~~~~~~a~~~L~~L~~~-~~~~~~i~~~g~i~~Lv~l-L~~~~~~~~~~al  183 (323)
                      .++...+.+.  .+|.++..+..+.    ......++.+|..+-.+ ++.-....-+-+.|++.+. +.+++..+..++-
T Consensus       604 ~~~~g~m~e~--~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~  681 (1005)
T KOG2274|consen  604 AANYGPMQER--LIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNAT  681 (1005)
T ss_pred             HHhhcchHHH--HHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHH
Confidence            7788777774  6999999998764    66677788888866543 2333343445578888886 6678888999999


Q ss_pred             HHHHHhccCC
Q 020640          184 SAIFNLCITH  193 (323)
Q Consensus       184 ~aL~~L~~~~  193 (323)
                      .+|+.+-..+
T Consensus       682 EcLra~Is~~  691 (1005)
T KOG2274|consen  682 ECLRALISVT  691 (1005)
T ss_pred             HHHHHHHhcC
Confidence            9998886554

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=94.59  E-value=4.7  Score=38.96  Aligned_cols=170  Identities=16%  Similarity=0.145  Sum_probs=91.7

Q ss_pred             CCCHHHHHHHHHHHHHhccccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHH
Q 020640           90 GINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLID  169 (323)
Q Consensus        90 ~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~  169 (323)
                      +....+.-.++.++..++... -...+++.  .+..|-.+|++.....+-.|.++|..|++..+.+.....    +.+=.
T Consensus       275 ~k~emV~lE~Ar~v~~~~~~n-v~~~~~~~--~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN----~evEs  347 (898)
T COG5240         275 DKFEMVFLEAARAVCALSEEN-VGSQFVDQ--TVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCN----KEVES  347 (898)
T ss_pred             CcchhhhHHHHHHHHHHHHhc-cCHHHHHH--HHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecC----hhHHH
Confidence            445677888888888776543 13334432  466777888888999999999999999976544433322    22333


Q ss_pred             HhhhcCHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcCchHHHHHHHHHHHhc-CHHHHH--------HHHh
Q 020640          170 LLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDGVHVDELLAILAMLST-NHRAVE--------EIGD  240 (323)
Q Consensus       170 lL~~~~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~a~~~L~~l~~-~~~~~~--------~i~~  240 (323)
                      ++.+.+..+...|+.+|.. +..+++..+++.  .++..+.=++++ .+.-+..+++.||. .|.-+.        .+.+
T Consensus       348 LIsd~Nr~IstyAITtLLK-TGt~e~idrLv~--~I~sfvhD~SD~-FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~L~~  423 (898)
T COG5240         348 LISDENRTISTYAITTLLK-TGTEETIDRLVN--LIPSFVHDMSDG-FKIIAIDALRSLSLLFPSKKLSYLDFLGSSLLQ  423 (898)
T ss_pred             HhhcccccchHHHHHHHHH-cCchhhHHHHHH--HHHHHHHhhccC-ceEEeHHHHHHHHhhCcHHHHHHHHHHHHHHHh
Confidence            4455555666666665532 333344444443  344444444443 22223333333333 232222        1234


Q ss_pred             cCC-------HHHHHHHHhccCChhHHHHHHHHHHHhcc
Q 020640          241 LGG-------VSCMLRIIRESTCDRNKENCIAILHTICL  272 (323)
Q Consensus       241 ~g~-------i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~  272 (323)
                      +|+       +..+.++++. . +..++.|+..|+..-.
T Consensus       424 eGg~eFK~~~Vdaisd~~~~-~-p~skEraLe~LC~fIE  460 (898)
T COG5240         424 EGGLEFKKYMVDAISDAMEN-D-PDSKERALEVLCTFIE  460 (898)
T ss_pred             cccchHHHHHHHHHHHHHhh-C-chHHHHHHHHHHHHHh
Confidence            442       4445555552 2 5566666665555443

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=94.58  E-value=0.55  Score=40.60  Aligned_cols=147  Identities=22%  Similarity=0.243  Sum_probs=97.3

Q ss_pred             HHHHHcCCCCCCCCCCCCccccchhhhhHHHHHHHHhc-CC--chhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHH
Q 020640            4 QWCRSQGIELPNSVQYINEEGITEADRDHFLSLLKKMS-AT--LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLS   80 (323)
Q Consensus         4 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Lv~~l~-~~--~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~   80 (323)
                      .|. +++.+.+.+.++.+-++..|.....+..+-..|. .+  ...|..|...|+|.-.  +          ..|..|++
T Consensus       128 e~~-~~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~--E----------eaI~al~~  194 (289)
T KOG0567|consen  128 EWK-DIIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGT--E----------EAINALID  194 (289)
T ss_pred             HHh-hccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCc--H----------HHHHHHHH
Confidence            573 3444444455555555556655566777766663 22  3356777777777652  1          23555666


Q ss_pred             hhcccccCCCCCHHHHHHHHHHHHHhccccchhhhhhccCCcHHHHHHHHhc--CCHHHHHHHHHHHHHhcCCCCchhhh
Q 020640           81 PLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRS--GTIETRSNAAAALFTLSALDSNKEVI  158 (323)
Q Consensus        81 lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~--~~~~~~~~a~~~L~~L~~~~~~~~~i  158 (323)
                      -|.      .++.-++..++-++..|-.           ...++.|.+.|..  +++-++-.|+.+|..++..+      
T Consensus       195 ~l~------~~SalfrhEvAfVfGQl~s-----------~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e~------  251 (289)
T KOG0567|consen  195 GLA------DDSALFRHEVAFVFGQLQS-----------PAAIPSLIKVLLDETEHPMVRHEAAEALGAIADED------  251 (289)
T ss_pred             hcc------cchHHHHHHHHHHHhhccc-----------hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCHH------
Confidence            666      5567788888888877632           3358888888864  47788888999988876533      


Q ss_pred             hccCChHHHHHHhhhcCHhHHHHHHHHHHHhc
Q 020640          159 GKSGALKPLIDLLDEGHQSAMKDVASAIFNLC  190 (323)
Q Consensus       159 ~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~  190 (323)
                          +++.|.+.+.++.+-+++.|.-+|-.+-
T Consensus       252 ----~~~vL~e~~~D~~~vv~esc~valdm~e  279 (289)
T KOG0567|consen  252 ----CVEVLKEYLGDEERVVRESCEVALDMLE  279 (289)
T ss_pred             ----HHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence                6888888888888888888777775543

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=94.34  E-value=0.066  Score=30.11  Aligned_cols=28  Identities=18%  Similarity=0.243  Sum_probs=25.0

Q ss_pred             hHHHHHHhhhcCHhHHHHHHHHHHHhcc
Q 020640          164 LKPLIDLLDEGHQSAMKDVASAIFNLCI  191 (323)
Q Consensus       164 i~~Lv~lL~~~~~~~~~~al~aL~~L~~  191 (323)
                      +|.+++++.+++++++..|+.+|..++.
T Consensus         2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~   29 (31)
T PF02985_consen    2 LPILLQLLNDPSPEVRQAAAECLGAIAE   29 (31)
T ss_dssp             HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence            6899999999999999999999999865

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=94.33  E-value=2.4  Score=39.88  Aligned_cols=146  Identities=14%  Similarity=0.023  Sum_probs=90.0

Q ss_pred             HHHHHHHHHHHHHhcC-CCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHHhccC-Cc--------h-----hHHH
Q 020640          135 IETRSNAAAALFTLSA-LDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCIT-HE--------N-----KARA  199 (323)
Q Consensus       135 ~~~~~~a~~~L~~L~~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~-~~--------~-----~~~i  199 (323)
                      +...+..+|+...|.. +++..     ...+..|++++.+  +.+...+++++.-|..+ ++        +     |+++
T Consensus       248 ~~~~~~~~Wi~KaLv~R~~~~~-----~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~  320 (415)
T PF12460_consen  248 PQALEILIWITKALVMRGHPLA-----TELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRF  320 (415)
T ss_pred             HHHHHHHHHHHHHHHHcCCchH-----HHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHH
Confidence            3444455555555542 22111     1245667777766  56777888888877666 22        1     2222


Q ss_pred             HhhCchHHHHHHhhcC--chHHHHHHHHHHHhcC-HHHHHHHHhc--CCHHHHHHHHhccCChhHHHHHHHHHHHhcccC
Q 020640          200 VRDGGVSVILKKIMDG--VHVDELLAILAMLSTN-HRAVEEIGDL--GGVSCMLRIIRESTCDRNKENCIAILHTICLSD  274 (323)
Q Consensus       200 ~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~-~~~~~~i~~~--g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~  274 (323)
                      .. -.+|.|++..++.  ..+...+.+|.++..+ |  +..+..+  ..+|-|++-|...+ ..++..+..+|..+....
T Consensus       321 F~-~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP--~~vl~~~l~~LlPLLlqsL~~~~-~~v~~s~L~tL~~~l~~~  396 (415)
T PF12460_consen  321 FT-QVLPKLLEGFKEADDEIKSNYLTALSHLLKNVP--KSVLLPELPTLLPLLLQSLSLPD-ADVLLSSLETLKMILEEA  396 (415)
T ss_pred             HH-HHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCC--HHHHHHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHcC
Confidence            22 2566777766654  4688889999999885 4  2222222  46888888887554 789999999999999988


Q ss_pred             hHhHHHHHhhcccHHHHHH
Q 020640          275 RTKWKAMREEESTHGTISK  293 (323)
Q Consensus       275 ~~~~~~~~~~~~~i~~L~~  293 (323)
                      ++...+=+  ...++.|++
T Consensus       397 ~~~i~~hl--~sLI~~LL~  413 (415)
T PF12460_consen  397 PELISEHL--SSLIPRLLK  413 (415)
T ss_pred             HHHHHHHH--HHHHHHHHh
Confidence            65443322  245555544

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=94.26  E-value=0.45  Score=45.94  Aligned_cols=132  Identities=16%  Similarity=0.256  Sum_probs=83.6

Q ss_pred             hHHHHHHHHhcCCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhcccc
Q 020640           31 DHFLSLLKKMSATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHD  110 (323)
Q Consensus        31 ~~i~~Lv~~l~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~  110 (323)
                      .....++...+++...+.-|...|..+.++-|+.+      ..++..+++++.      +++..++..|...|-.++.+.
T Consensus        23 ~~y~~il~~~kg~~k~K~Laaq~I~kffk~FP~l~------~~Ai~a~~DLcE------Ded~~iR~~aik~lp~~ck~~   90 (556)
T PF05918_consen   23 EDYKEILDGVKGSPKEKRLAAQFIPKFFKHFPDLQ------EEAINAQLDLCE------DEDVQIRKQAIKGLPQLCKDN   90 (556)
T ss_dssp             HHHHHHHHGGGS-HHHHHHHHHHHHHHHCC-GGGH------HHHHHHHHHHHT-------SSHHHHHHHHHHGGGG--T-
T ss_pred             HHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhH------HHHHHHHHHHHh------cccHHHHHHHHHhHHHHHHhH
Confidence            34555556556778888899999999998888865      345667999999      889999999999999998763


Q ss_pred             -chhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhh---hcCHhHHHHHHHHH
Q 020640          111 -NNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLD---EGHQSAMKDVASAI  186 (323)
Q Consensus       111 -~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~---~~~~~~~~~al~aL  186 (323)
                       +....      +...|+.+|.++++.-...+-.+|..|-..+.       .+.+..++.-+.   +++..+++.++..|
T Consensus        91 ~~~v~k------vaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~-------k~tL~~lf~~i~~~~~~de~~Re~~lkFl  157 (556)
T PF05918_consen   91 PEHVSK------VADVLVQLLQTDDPVELDAVKNSLMSLLKQDP-------KGTLTGLFSQIESSKSGDEQVRERALKFL  157 (556)
T ss_dssp             -T-HHH------HHHHHHHHTT---HHHHHHHHHHHHHHHHH-H-------HHHHHHHHHHHH---HS-HHHHHHHHHHH
T ss_pred             HHHHhH------HHHHHHHHHhcccHHHHHHHHHHHHHHHhcCc-------HHHHHHHHHHHHhcccCchHHHHHHHHHH
Confidence             23332      35668889988877666666666666643221       233444554444   45566666666665


Q ss_pred             H
Q 020640          187 F  187 (323)
Q Consensus       187 ~  187 (323)
                      .
T Consensus       158 ~  158 (556)
T PF05918_consen  158 R  158 (556)
T ss_dssp             H
T ss_pred             H
Confidence            3

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=94.25  E-value=4.6  Score=37.50  Aligned_cols=96  Identities=15%  Similarity=0.229  Sum_probs=74.0

Q ss_pred             HHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchhhhhhccCCcHHHHHHHHh-cC---CHHHHHHHHHHHHHhcC
Q 020640           75 IPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALR-SG---TIETRSNAAAALFTLSA  150 (323)
Q Consensus        75 i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~-~~---~~~~~~~a~~~L~~L~~  150 (323)
                      ...|..+++...   .--+.+-..|+.++..+-.++...-.+....|+++.++..+. .+   +.++....-.++..||.
T Consensus       108 ~~sL~~Il~n~~---~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicL  184 (379)
T PF06025_consen  108 LSSLKHILENPE---VFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICL  184 (379)
T ss_pred             HHHHHHHHhCcc---ccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhc
Confidence            444555555321   224678888999999887777755555555679999999887 43   67888888899999999


Q ss_pred             CCCchhhhhccCChHHHHHHhhh
Q 020640          151 LDSNKEVIGKSGALKPLIDLLDE  173 (323)
Q Consensus       151 ~~~~~~~i~~~g~i~~Lv~lL~~  173 (323)
                      +....+.+.+.+.++.+++++.+
T Consensus       185 N~~Gl~~~~~~~~l~~~f~if~s  207 (379)
T PF06025_consen  185 NNRGLEKVKSSNPLDKLFEIFTS  207 (379)
T ss_pred             CHHHHHHHHhcChHHHHHHHhCC
Confidence            99999999999999999998875

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=94.25  E-value=2.1  Score=40.27  Aligned_cols=192  Identities=17%  Similarity=0.110  Sum_probs=110.2

Q ss_pred             hhhhHHHHHHHHhc--CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHH
Q 020640           28 ADRDHFLSLLKKMS--ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLN  105 (323)
Q Consensus        28 ~~~~~i~~Lv~~l~--~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~  105 (323)
                      .....+..++....  +++..+..+...+.-+..+-+...  ..+  ..++.+...+. .    ..++..+..+..++.-
T Consensus       186 ~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~--~l~--~~l~~~~~~~~-~----~~~~~~~~~~~~~~~W  256 (415)
T PF12460_consen  186 DLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDD--DLD--EFLDSLLQSIS-S----SEDSELRPQALEILIW  256 (415)
T ss_pred             CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChh--hHH--HHHHHHHhhhc-c----cCCcchhHHHHHHHHH
Confidence            44457777777773  446778888888888885522110  111  22333333331 0    2333444444444433


Q ss_pred             hccccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-CC--------c-----hhhhhccCChHHHHHHh
Q 020640          106 LSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSAL-DS--------N-----KEVIGKSGALKPLIDLL  171 (323)
Q Consensus       106 ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~-~~--------~-----~~~i~~~g~i~~Lv~lL  171 (323)
                      +++.---|..-.. ...+..|+.++.+  +++...+++.+.-|..+ ++        +     |.++. ...+|.|++..
T Consensus       257 i~KaLv~R~~~~~-~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F-~~~~p~L~~~~  332 (415)
T PF12460_consen  257 ITKALVMRGHPLA-TELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFF-TQVLPKLLEGF  332 (415)
T ss_pred             HHHHHHHcCCchH-HHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHH-HHHHHHHHHHH
Confidence            3221111110001 1134556666666  66788888888888765 22        1     12222 23567777777


Q ss_pred             hhcCHhHHHHHHHHHHHhccCCchhHHHHhh-CchHHHHHHhhcC--chHHHHHHHHHHHhcCH
Q 020640          172 DEGHQSAMKDVASAIFNLCITHENKARAVRD-GGVSVILKKIMDG--VHVDELLAILAMLSTNH  232 (323)
Q Consensus       172 ~~~~~~~~~~al~aL~~L~~~~~~~~~i~~~-g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~~  232 (323)
                      +..+...+...+.+|.++..+-+...-.-+. ..+|.|++-|+-+  +++..++.+|..+....
T Consensus       333 ~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~  396 (415)
T PF12460_consen  333 KEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA  396 (415)
T ss_pred             hhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence            7766668888899999998866633333332 5778888888754  57888999988888754

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=94.08  E-value=0.08  Score=49.35  Aligned_cols=181  Identities=9%  Similarity=0.018  Sum_probs=105.2

Q ss_pred             CHHHHHHHHHHHHHhcCCCCchhhhhc-cCChHHHHHHhhhcCHhHHHHHHHHHHHhccC----CchhHHHH-hh-C-ch
Q 020640          134 TIETRSNAAAALFTLSALDSNKEVIGK-SGALKPLIDLLDEGHQSAMKDVASAIFNLCIT----HENKARAV-RD-G-GV  205 (323)
Q Consensus       134 ~~~~~~~a~~~L~~L~~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~----~~~~~~i~-~~-g-~v  205 (323)
                      +.-++..|.+++.-+..++..+....- .++...++..+.+..-..+..+.+++.|++..    -++..... +. | .+
T Consensus       404 ~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll  483 (728)
T KOG4535|consen  404 NRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLL  483 (728)
T ss_pred             HHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHH
Confidence            334555666666666677765554433 45566666667676777889999999998541    12211111 11 1 12


Q ss_pred             HHHHHHhh----c-CchHHHHHHHHHHHhcCH----HHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHhcccChH
Q 020640          206 SVILKKIM----D-GVHVDELLAILAMLSTNH----RAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRT  276 (323)
Q Consensus       206 ~~Lv~ll~----~-~~~~~~a~~~L~~l~~~~----~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~  276 (323)
                      ..+...-.    + ..++.+++++|.|+...-    +..-.....|.+..+..-....+..++|=++|-++.||..+..-
T Consensus       484 ~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~  563 (728)
T KOG4535|consen  484 LKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPAL  563 (728)
T ss_pred             HHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccc
Confidence            22222211    1 168899999999998731    11112222344555553333334588999999999999998742


Q ss_pred             hHHHHHhhcccHHHHHHHhhcC-CHHHHHHHHHHHHHHh
Q 020640          277 KWKAMREEESTHGTISKLAQDG-TARAKRKATGILERLK  314 (323)
Q Consensus       277 ~~~~~~~~~~~i~~L~~ll~~~-~~~~~~~A~~~L~~l~  314 (323)
                      ....+-.-....+.|..++.+- +=.++-+|+.+|..-.
T Consensus       564 ~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~  602 (728)
T KOG4535|consen  564 PLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPG  602 (728)
T ss_pred             cccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCC
Confidence            2222222334556666666543 7777888888876543

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=94.06  E-value=0.12  Score=29.01  Aligned_cols=30  Identities=13%  Similarity=0.176  Sum_probs=26.0

Q ss_pred             cHHHHHHHhhcCCHHHHHHHHHHHHHHhcc
Q 020640          287 THGTISKLAQDGTARAKRKATGILERLKRT  316 (323)
Q Consensus       287 ~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~  316 (323)
                      .++.+++++.+++++++..|+..|..++++
T Consensus         1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~   30 (31)
T PF02985_consen    1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH   30 (31)
T ss_dssp             HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence            368899999999999999999999998864

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.04  E-value=0.25  Score=47.88  Aligned_cols=138  Identities=16%  Similarity=0.173  Sum_probs=93.5

Q ss_pred             CCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC
Q 020640           73 DAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALD  152 (323)
Q Consensus        73 g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~  152 (323)
                      |+.-.++.-|.      ++.-+++..|+..++.|+..   +..+...  .+..|+.++.++.++++..|..+|..++.+-
T Consensus       373 GACGA~VhGlE------DEf~EVR~AAV~Sl~~La~s---sP~FA~~--aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l  441 (823)
T KOG2259|consen  373 GACGALVHGLE------DEFYEVRRAAVASLCSLATS---SPGFAVR--ALDFLVDMFNDEIEVVRLKAIFALTMISVHL  441 (823)
T ss_pred             cccceeeeech------HHHHHHHHHHHHHHHHHHcC---CCCcHHH--HHHHHHHHhccHHHHHHHHHHHHHHHHHHHh
Confidence            34445555555      66789999999999999864   3444443  5889999999999999999999999998762


Q ss_pred             CchhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhc-CchHHHHHHHHHHHhc
Q 020640          153 SNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMD-GVHVDELLAILAMLST  230 (323)
Q Consensus       153 ~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~-~~~~~~a~~~L~~l~~  230 (323)
                      .     .+..-++.+++.|.+.+.++++..-..|.+.=..+-++..+.    +..|+.-|.. +.-+....+++..+..
T Consensus       442 ~-----i~eeql~~il~~L~D~s~dvRe~l~elL~~~~~~d~~~i~m~----v~~lL~~L~kyPqDrd~i~~cm~~iGq  511 (823)
T KOG2259|consen  442 A-----IREEQLRQILESLEDRSVDVREALRELLKNARVSDLECIDMC----VAHLLKNLGKYPQDRDEILRCMGRIGQ  511 (823)
T ss_pred             e-----ecHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHH----HHHHHHHhhhCCCCcHHHHHHHHHHhc
Confidence            2     334468888999999999999988888876544444444442    2223333322 2334455555555555

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=94.00  E-value=1.9  Score=43.29  Aligned_cols=197  Identities=19%  Similarity=0.109  Sum_probs=120.8

Q ss_pred             HHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchhhhhhccCCcHH--
Q 020640           47 QTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIP--  124 (323)
Q Consensus        47 ~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~--  124 (323)
                      +..+. +|.+.+..++++++.+.+ .||+..+.+.++..     ...+.+..++..+.|++...+.+....... .+.  
T Consensus       489 ~~~~~-~l~~~t~~~~~~C~~~l~-~~g~~~~~~~l~~f-----~~~~~~~~il~~l~n~~~~~~~~~~~~~~~-~~~~~  560 (699)
T KOG3665|consen  489 VLEFT-ALWNITDENPETCKEFLD-NGGMKLLFKCLESF-----DNEELHRKILGLLGNLAEVLELRELLMIFE-FIDFS  560 (699)
T ss_pred             HHHHH-HHHhhhcCCHHHHHHHHh-cccHHHHHHHHhhc-----cchhHHHHHHHHHHHHHHHhhhhhhhhHHH-HHHHH
Confidence            44444 888999999999999999 99999999999863     467899999999999998776555444322 122  


Q ss_pred             HHHHHHhcCCH-HHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHHhccCCchhHHHHhhC
Q 020640          125 LLMDALRSGTI-ETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDG  203 (323)
Q Consensus       125 ~Lv~ll~~~~~-~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~i~~~g  203 (323)
                      .+-.++...+. +.-..++++|..+..+.+.   -...+.-+..-+++.+           +.   .........+....
T Consensus       561 ~f~~~~~~w~~~ersY~~~siLa~ll~~~~~---~~~~~~r~~~~~~l~e-----------~i---~~~~~~~~~~~~~~  623 (699)
T KOG3665|consen  561 VFKVLLNKWDSIERSYNAASILALLLSDSEK---TTECVFRNSVNELLVE-----------AI---SRWLTSEIRVINDR  623 (699)
T ss_pred             HHHHHHhhcchhhHHHHHHHHHHHHHhCCCc---CccccchHHHHHHHHH-----------Hh---hccCccceeehhhh
Confidence            23334444444 7888899999988765443   1112222222222111           11   11111111111111


Q ss_pred             chHH-HHHHhh---cCchHHHHHHHHHHHhc-CHHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHH
Q 020640          204 GVSV-ILKKIM---DGVHVDELLAILAMLST-NHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILH  268 (323)
Q Consensus       204 ~v~~-Lv~ll~---~~~~~~~a~~~L~~l~~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~  268 (323)
                      ...+ +..++.   .+..+-.|++++.++.. +++....+.+.|+++.+.+.-.......+++.+...+-
T Consensus       624 ~f~~~~~~il~~s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  693 (699)
T KOG3665|consen  624 SFFPRILRILRLSKSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIE  693 (699)
T ss_pred             hcchhHHHHhcccCCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhh
Confidence            2222 333443   34778889999999988 47777778888888888766653323445555555443

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.94  E-value=2.8  Score=42.14  Aligned_cols=223  Identities=13%  Similarity=0.108  Sum_probs=128.2

Q ss_pred             hHHHHHHHHhcC-CchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccc
Q 020640           31 DHFLSLLKKMSA-TLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIH  109 (323)
Q Consensus        31 ~~i~~Lv~~l~~-~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~  109 (323)
                      +..+.-+..+.+ .+.+|--|+..|+.+... ......+.. .+++....+.|+      ++|+-+--+|...+..|+.-
T Consensus       727 e~~qeai~sl~d~qvpik~~gL~~l~~l~e~-r~~~~~~~~-ekvl~i~ld~Lk------dedsyvyLnaI~gv~~Lcev  798 (982)
T KOG4653|consen  727 EPLQEAISSLHDDQVPIKGYGLQMLRHLIEK-RKKATLIQG-EKVLAIALDTLK------DEDSYVYLNAIRGVVSLCEV  798 (982)
T ss_pred             HHHHHHHHHhcCCcccchHHHHHHHHHHHHh-cchhhhhhH-HHHHHHHHHHhc------ccCceeeHHHHHHHHHHHHh
Confidence            345566666654 477899999999999964 344455666 789999999999      77888888888866666542


Q ss_pred             cchhhhhhccCCcHHHHHHH-HhcC---CHHHHHHHHHHHHHhcCC-CCchhhhhccCChHHHHHHhhhcCHhHHHHHHH
Q 020640          110 DNNKKLVAETPMVIPLLMDA-LRSG---TIETRSNAAAALFTLSAL-DSNKEVIGKSGALKPLIDLLDEGHQSAMKDVAS  184 (323)
Q Consensus       110 ~~~~~~i~~~~g~i~~Lv~l-l~~~---~~~~~~~a~~~L~~L~~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~  184 (323)
                             .. ..++|.+... ....   .++.+...-.++.++..- .+-..... .-.+...+...++++...+..++.
T Consensus       799 -------y~-e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~-~~Li~tfl~gvrepd~~~RaSS~a  869 (982)
T KOG4653|consen  799 -------YP-EDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYK-AVLINTFLSGVREPDHEFRASSLA  869 (982)
T ss_pred             -------cc-hhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHH-HHHHHHHHHhcCCchHHHHHhHHH
Confidence                   11 1245555552 2211   123333333555555321 11111111 112333444455567778999999


Q ss_pred             HHHHhccCCchhHHHHhhCchHHHHHHhhcC---chHHHHHHHHHHHhcC-HHHHHHHH---hcCCHHHHHHHHhccCCh
Q 020640          185 AIFNLCITHENKARAVRDGGVSVILKKIMDG---VHVDELLAILAMLSTN-HRAVEEIG---DLGGVSCMLRIIRESTCD  257 (323)
Q Consensus       185 aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~---~~~~~a~~~L~~l~~~-~~~~~~i~---~~g~i~~Lv~ll~~~~~~  257 (323)
                      .+++||.-...+..=.=..++..++.+.+.+   -++..|+-.+..+-.+ .+.--.|.   .-+....+.+..+..+++
T Consensus       870 ~lg~Lcq~~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd  949 (982)
T KOG4653|consen  870 NLGQLCQLLAFQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDD  949 (982)
T ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchh
Confidence            9999986443221111112445555555543   4688888888777663 21111121   224456666677655556


Q ss_pred             hHHHHHHHHHHHh
Q 020640          258 RNKENCIAILHTI  270 (323)
Q Consensus       258 ~~~~~a~~~L~~L  270 (323)
                      .++.+|+.++-.+
T Consensus       950 ~~klhaql~leei  962 (982)
T KOG4653|consen  950 GLKLHAQLCLEEI  962 (982)
T ss_pred             HHHHHHHHHHHHH
Confidence            6777777776654

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=93.88  E-value=1.7  Score=45.19  Aligned_cols=227  Identities=15%  Similarity=0.131  Sum_probs=133.7

Q ss_pred             hHHHHHHHHhc-CCchhHHHHHHHHHHHhcc----ChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHH
Q 020640           31 DHFLSLLKKMS-ATLPDQTEAAKELRLLTKR----MPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLN  105 (323)
Q Consensus        31 ~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~----~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~  105 (323)
                      .++|.+|.++. ...++|..|+.+|..+...    .+.+...|.+  -..|.|-.++..     +....++..-+..|..
T Consensus       462 RVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~e--YlfP~L~~l~~d-----~~~~~vRiayAsnla~  534 (1431)
T KOG1240|consen  462 RVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPE--YLFPHLNHLLND-----SSAQIVRIAYASNLAQ  534 (1431)
T ss_pred             hhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHh--hhhhhhHhhhcc-----CccceehhhHHhhHHH
Confidence            47788888886 4578899999888877632    2223334444  456777777762     1233444444444444


Q ss_pred             hcc------------------ccc-h-----------hhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC-Cc
Q 020640          106 LSI------------------HDN-N-----------KKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALD-SN  154 (323)
Q Consensus       106 ls~------------------~~~-~-----------~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~-~~  154 (323)
                      ||.                  ++. +           ...+..  ++-.....+|..+.+-++..-+..|.-||.+- .-
T Consensus       535 LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~--~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~  612 (1431)
T KOG1240|consen  535 LAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHH--TVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKE  612 (1431)
T ss_pred             HHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHH--HHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhc
Confidence            431                  111 1           112221  12233445556666666666666777776321 10


Q ss_pred             hhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcCH
Q 020640          155 KEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNH  232 (323)
Q Consensus       155 ~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~~  232 (323)
                      +   .+.=+++.|+..|.+.+...+..=...|.-+|..-.-  +-++++.+|.|.+-|.++  .+...|+++|.-|+...
T Consensus       613 k---sND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~--rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~  687 (1431)
T KOG1240|consen  613 K---SNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGW--RSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLG  687 (1431)
T ss_pred             c---cccchHHHHHHHhcCccHHHHHHHHhhccceEEEEee--eeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhc
Confidence            0   1123678888899888877776555555444432221  114556788888888887  57899999999998865


Q ss_pred             HHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHhccc
Q 020640          233 RAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLS  273 (323)
Q Consensus       233 ~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~  273 (323)
                      -.++..+. ..++...-+|-.. +..++..++..+......
T Consensus       688 ll~K~~v~-~i~~~v~PlL~hP-N~WIR~~~~~iI~~~~~~  726 (1431)
T KOG1240|consen  688 LLRKPAVK-DILQDVLPLLCHP-NLWIRRAVLGIIAAIARQ  726 (1431)
T ss_pred             ccchHHHH-HHHHhhhhheeCc-hHHHHHHHHHHHHHHHhh
Confidence            44443321 2344455556544 488999999999887654

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=93.76  E-value=5.3  Score=41.26  Aligned_cols=190  Identities=17%  Similarity=0.107  Sum_probs=118.9

Q ss_pred             cHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhc-CHhHHHHHHHHHHHhccCCchhHHHH
Q 020640          122 VIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEG-HQSAMKDVASAIFNLCITHENKARAV  200 (323)
Q Consensus       122 ~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~al~aL~~L~~~~~~~~~i~  200 (323)
                      +++.|...+++.+..+++.|++-+..++...+  ..+.+ .++...++++... +...-..++-+|+.|+...=-....+
T Consensus       342 vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp--~~Lad-~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps~l  418 (1133)
T KOG1943|consen  342 VIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP--PELAD-QVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPSLL  418 (1133)
T ss_pred             HHHHHHHhccCCcchhhHHHHHHHHHHHccCc--HHHHH-HHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHHH
Confidence            67777788888899999999999999986554  22332 2566666655543 35566678888888877654333333


Q ss_pred             hhCchHHHHHHhh---------cC-chHHHHHHHHHHHhcC--HH-HHHHHHhcCCHHHHH-HHHhccCChhHHHHHHHH
Q 020640          201 RDGGVSVILKKIM---------DG-VHVDELLAILAMLSTN--HR-AVEEIGDLGGVSCML-RIIRESTCDRNKENCIAI  266 (323)
Q Consensus       201 ~~g~v~~Lv~ll~---------~~-~~~~~a~~~L~~l~~~--~~-~~~~i~~~g~i~~Lv-~ll~~~~~~~~~~~a~~~  266 (323)
                      +. ++|.++.-|.         .| .+++.|+-+++.++..  +. .+. +++ ...+.|+ ..+.+.+ -.++++|..+
T Consensus       419 ~d-VvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p-~l~-~L~s~LL~~AlFDre-vncRRAAsAA  494 (1133)
T KOG1943|consen  419 ED-VVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKP-VLQ-SLASALLIVALFDRE-VNCRRAASAA  494 (1133)
T ss_pred             HH-HHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhH-HHH-HHHHHHHHHHhcCch-hhHhHHHHHH
Confidence            32 5566665553         22 6899999999999984  22 222 332 2223333 4444332 5678888888


Q ss_pred             HHHhcccChHh-------------------------HHHHHhhcccHHHHHHH-----hhcCCHHHHHHHHHHHHHHhcc
Q 020640          267 LHTICLSDRTK-------------------------WKAMREEESTHGTISKL-----AQDGTARAKRKATGILERLKRT  316 (323)
Q Consensus       267 L~~L~~~~~~~-------------------------~~~~~~~~~~i~~L~~l-----l~~~~~~~~~~A~~~L~~l~~~  316 (323)
                      +........+.                         ...+-...+....+++-     +.+.++.+++-|++.|..|+..
T Consensus       495 lqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~  574 (1133)
T KOG1943|consen  495 LQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLT  574 (1133)
T ss_pred             HHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHh
Confidence            87776552210                         11122234444444442     4556899999999999998765


Q ss_pred             hh
Q 020640          317 VN  318 (323)
Q Consensus       317 ~~  318 (323)
                      .+
T Consensus       575 ~p  576 (1133)
T KOG1943|consen  575 EP  576 (1133)
T ss_pred             hH
Confidence            44

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.50  E-value=4  Score=41.12  Aligned_cols=212  Identities=14%  Similarity=0.080  Sum_probs=122.7

Q ss_pred             CCCHHHHHHHHHHHHHhccccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHH
Q 020640           90 GINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLID  169 (323)
Q Consensus        90 ~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~  169 (323)
                      ++.+.++..|+..|..+.........+... +++...+..+++.+.-+--.|+..+..|+.-       ....++|.|.+
T Consensus       738 d~qvpik~~gL~~l~~l~e~r~~~~~~~~e-kvl~i~ld~LkdedsyvyLnaI~gv~~Lcev-------y~e~il~dL~e  809 (982)
T KOG4653|consen  738 DDQVPIKGYGLQMLRHLIEKRKKATLIQGE-KVLAIALDTLKDEDSYVYLNAIRGVVSLCEV-------YPEDILPDLSE  809 (982)
T ss_pred             CCcccchHHHHHHHHHHHHhcchhhhhhHH-HHHHHHHHHhcccCceeeHHHHHHHHHHHHh-------cchhhHHHHHH
Confidence            455678888888888887655555555554 4888888999998888888888877777642       22456777777


Q ss_pred             H-hhhc---CHhHHHHHHHHHHHhccCC-chhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcCH--HHHHHHHh
Q 020640          170 L-LDEG---HQSAMKDVASAIFNLCITH-ENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNH--RAVEEIGD  240 (323)
Q Consensus       170 l-L~~~---~~~~~~~al~aL~~L~~~~-~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~~--~~~~~i~~  240 (323)
                      . ....   ..+.+...-.++.++...- +....-.+ -.+...+...+++  ..+..++.++.++|.--  ..-..+. 
T Consensus       810 ~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~-  887 (982)
T KOG4653|consen  810 EYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFH-  887 (982)
T ss_pred             HHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHH-
Confidence            3 3332   1233333335555543311 11111111 1223344444444  45888999999998732  1222333 


Q ss_pred             cCCHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhc--ccHHHHHHHh-hcCCHHHHHHHHHHHHH
Q 020640          241 LGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEE--STHGTISKLA-QDGTARAKRKATGILER  312 (323)
Q Consensus       241 ~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~--~~i~~L~~ll-~~~~~~~~~~A~~~L~~  312 (323)
                       ..+..++.+.+.+.+..++++|+..+..+-.+.....-++.+..  .....+.... .+.++.++..|...+..
T Consensus       888 -ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~lee  961 (982)
T KOG4653|consen  888 -EVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEE  961 (982)
T ss_pred             -HHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence             34677777777666688999999999998876643222332211  1222233333 33355556555555443

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.25  E-value=7.4  Score=41.81  Aligned_cols=234  Identities=13%  Similarity=0.078  Sum_probs=120.7

Q ss_pred             hHHHHHHHHh---cCCch--hHHHHHHHHHHHhccCh-hhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHH
Q 020640           31 DHFLSLLKKM---SATLP--DQTEAAKELRLLTKRMP-SFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLL  104 (323)
Q Consensus        31 ~~i~~Lv~~l---~~~~~--~~~~a~~~L~~l~~~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~  104 (323)
                      -..+.||..|   +.||+  +| .|..-|.+.-..+. ........  ...+.|+.-|.      +....+++.++.+|.
T Consensus       994 p~l~kLIPrLyRY~yDP~~~Vq-~aM~sIW~~Li~D~k~~vd~y~n--eIl~eLL~~lt------~kewRVReasclAL~ 1064 (1702)
T KOG0915|consen  994 PYLKKLIPRLYRYQYDPDKKVQ-DAMTSIWNALITDSKKVVDEYLN--EILDELLVNLT------SKEWRVREASCLALA 1064 (1702)
T ss_pred             hHHHHhhHHHhhhccCCcHHHH-HHHHHHHHHhccChHHHHHHHHH--HHHHHHHHhcc------chhHHHHHHHHHHHH
Confidence            3555666666   23444  44 35555555443332 22222222  34455555555      567889999999999


Q ss_pred             HhccccchhhhhhccCCcHHHHHHHHhcCCHHHHHH---HHHHHHHhcC---CCCc--hhhhhccCChHHHHH--Hhhhc
Q 020640          105 NLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSN---AAAALFTLSA---LDSN--KEVIGKSGALKPLID--LLDEG  174 (323)
Q Consensus       105 ~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~---a~~~L~~L~~---~~~~--~~~i~~~g~i~~Lv~--lL~~~  174 (323)
                      -|-...+.-...-+.+.....+.+...+-.+.+++.   ++++|..|+.   +..+  +.+-.-..++|.|++  .+ ++
T Consensus      1065 dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gim-s~ 1143 (1702)
T KOG0915|consen 1065 DLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIM-SK 1143 (1702)
T ss_pred             HHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcc-cc
Confidence            887665532222111123444455544444555554   4555555541   1111  111111234455543  22 45


Q ss_pred             CHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcC-------------chHHHHHHHHH-HHhcC-H--HHHHH
Q 020640          175 HQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG-------------VHVDELLAILA-MLSTN-H--RAVEE  237 (323)
Q Consensus       175 ~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~-------------~~~~~a~~~L~-~l~~~-~--~~~~~  237 (323)
                      -.+++..++.++.-|+.+......---...++.|++..+.-             +....++..++ +.+.+ |  +.-..
T Consensus      1144 v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ 1223 (1702)
T KOG0915|consen 1144 VNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINK 1223 (1702)
T ss_pred             hHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHH
Confidence            67899999999999987664311111113455555555421             12233443333 33333 1  11111


Q ss_pred             H-------HhcCCHHHHHHHHhccCChhHHHHHHHHHHHhcccC
Q 020640          238 I-------GDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSD  274 (323)
Q Consensus       238 i-------~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~  274 (323)
                      .       +=+..+|.+.++++.+-.-..|..++..+..|+..-
T Consensus      1224 ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~ 1267 (1702)
T KOG0915|consen 1224 CINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRL 1267 (1702)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHh
Confidence            1       112368888888887655667778888777776653

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.20  E-value=6.1  Score=41.22  Aligned_cols=218  Identities=17%  Similarity=0.166  Sum_probs=124.6

Q ss_pred             CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhcccc--chhhhhhcc
Q 020640           42 ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHD--NNKKLVAET  119 (323)
Q Consensus        42 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~--~~~~~i~~~  119 (323)
                      ++..+|.++-..|..++.. +.......+   -+..+.+.|.....  +.....+..++.+|..+-...  +....+.+ 
T Consensus       666 ~~~~vQkK~yrlL~~l~~~-~s~~~~~~q---~i~~I~n~L~ds~q--s~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k-  738 (1176)
T KOG1248|consen  666 SSTKVQKKAYRLLEELSSS-PSGEGLVEQ---RIDDIFNSLLDSFQ--SSSSPAQASRLKCLKRLLKLLSAEHCDLIPK-  738 (1176)
T ss_pred             ccHHHHHHHHHHHHHHhcC-CchhhHHHH---HHHHHHHHHHHHHh--ccchHHHHHHHHHHHHHHHhccHHHHHHHHH-
Confidence            3577899999999999965 333222222   34445555542221  444556666777666553322  34444444 


Q ss_pred             CCcHHHHHHHHhcCCHHHHHHHHHHHHHhcC----CCCchhhhhccCChHHHHHHhhhc--CHhHHHHHH--HHHHHhcc
Q 020640          120 PMVIPLLMDALRSGTIETRSNAAAALFTLSA----LDSNKEVIGKSGALKPLIDLLDEG--HQSAMKDVA--SAIFNLCI  191 (323)
Q Consensus       120 ~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~----~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~al--~aL~~L~~  191 (323)
                        .++-++-.++..+...+..+..+|..+..    .+.....  ..-.++..+..+..+  ..+....+.  -++..+..
T Consensus       739 --~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~--~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~  814 (1176)
T KOG1248|consen  739 --LIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEP--ASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQ  814 (1176)
T ss_pred             --HHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccc--hHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHH
Confidence              24444444477889999999999998872    1111111  112566666666654  333333333  23333221


Q ss_pred             CCchhHHHHhhCchHH----HHHHhhcC--chHHHHHHHHHHHhc-CHHHHHHHHhcCCHHHHHHHHhccCChhHHHHHH
Q 020640          192 THENKARAVRDGGVSV----ILKKIMDG--VHVDELLAILAMLST-NHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCI  264 (323)
Q Consensus       192 ~~~~~~~i~~~g~v~~----Lv~ll~~~--~~~~~a~~~L~~l~~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~  264 (323)
                      .   -..++..+.++.    +..+|.++  .++..|++.+.-++. .|+........-+++.+..++++.. ..++.+.-
T Consensus       815 e---~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k-~~~r~Kvr  890 (1176)
T KOG1248|consen  815 E---FKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHK-IKVRKKVR  890 (1176)
T ss_pred             H---HhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhh-HHHHHHHH
Confidence            1   111222233333    33444444  688999999988887 4655544444456888888888654 78888888


Q ss_pred             HHHHHhcccC
Q 020640          265 AILHTICLSD  274 (323)
Q Consensus       265 ~~L~~L~~~~  274 (323)
                      ..|-.|....
T Consensus       891 ~LlekLirkf  900 (1176)
T KOG1248|consen  891 LLLEKLIRKF  900 (1176)
T ss_pred             HHHHHHHHHh
Confidence            8888887744

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=92.91  E-value=3.7  Score=36.70  Aligned_cols=177  Identities=15%  Similarity=0.149  Sum_probs=108.7

Q ss_pred             CCCHHHHHHHHHHHHHhccccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcC-CC-Cch-------hhhhc
Q 020640           90 GINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSA-LD-SNK-------EVIGK  160 (323)
Q Consensus        90 ~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~-~~-~~~-------~~i~~  160 (323)
                      ++++.+++.|+..|.-.+.-+.   .+...  .++.+...++.+++.++..|+.++..+.. +. +.-       .....
T Consensus        38 ~~~~~vR~~al~cLGl~~Lld~---~~a~~--~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~  112 (298)
T PF12719_consen   38 SSDPAVRELALKCLGLCCLLDK---ELAKE--HLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDNDESVDS  112 (298)
T ss_pred             CCCHHHHHHHHHHHHHHHHhCh---HHHHH--HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccCccchH
Confidence            6788999999999998876554   33332  36778888877899999999999999863 22 111       11223


Q ss_pred             cCChHHHHHHhhhcCHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcC-----chHHHHH-HHHHHHhcCHHH
Q 020640          161 SGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG-----VHVDELL-AILAMLSTNHRA  234 (323)
Q Consensus       161 ~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~-----~~~~~a~-~~L~~l~~~~~~  234 (323)
                      ...+..+.+.+.+.+++++..++..+..|-..+....   ....+..|+-+.-++     .-..+++ ..+-..|.....
T Consensus       113 ~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~y~~s~~~  189 (298)
T PF12719_consen  113 KSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFPVYASSSPE  189 (298)
T ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHcCCHH
Confidence            5577788888888899999999999988865553222   112333344433332     1223343 344566665443


Q ss_pred             HHHHHhcCCHHHHHHHHhccCC---hh--H-HHHHHHHHHHhcccC
Q 020640          235 VEEIGDLGGVSCMLRIIRESTC---DR--N-KENCIAILHTICLSD  274 (323)
Q Consensus       235 ~~~i~~~g~i~~Lv~ll~~~~~---~~--~-~~~a~~~L~~L~~~~  274 (323)
                      .+..+....++.+-.+.+...+   +.  + -...+..+..++...
T Consensus       190 ~Q~~l~~~f~~~l~~~~~~~~~~~~~~~~v~~~~v~~~lv~lt~~~  235 (298)
T PF12719_consen  190 NQERLAEAFLPTLRTLSNAPDELDSPLAMVSPSQVASFLVDLTDPS  235 (298)
T ss_pred             HHHHHHHHHHHHHHHHHhCcccccCchhhCCHHHHHHHHHHHCChh
Confidence            3455555667777777764321   11  1 334555555655543

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=92.77  E-value=0.2  Score=46.79  Aligned_cols=152  Identities=10%  Similarity=0.078  Sum_probs=89.2

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHhcC--CC--Cc-hhhhhc-cC-ChHHHHHHhh---hcCHhHHHHHHHHHHHhccC
Q 020640          123 IPLLMDALRSGTIETRSNAAAALFTLSA--LD--SN-KEVIGK-SG-ALKPLIDLLD---EGHQSAMKDVASAIFNLCIT  192 (323)
Q Consensus       123 i~~Lv~ll~~~~~~~~~~a~~~L~~L~~--~~--~~-~~~i~~-~g-~i~~Lv~lL~---~~~~~~~~~al~aL~~L~~~  192 (323)
                      ...+...+.+..-..++.+++++.|++.  .+  .+ +..--+ .| .+..++....   .++.+++.++.++|.|+...
T Consensus       435 a~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQv  514 (728)
T KOG4535|consen  435 ANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQF  514 (728)
T ss_pred             HHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHH
Confidence            4455566666667788899999999852  11  12 111111 11 2233333322   24678899999999998653


Q ss_pred             CchhH----HHHhhCchHHHHHHhh-cC--chHHHHHHHHHHHhcCHHHHHHH--HhcCCHHHHHHHHhccCChhHHHHH
Q 020640          193 HENKA----RAVRDGGVSVILKKIM-DG--VHVDELLAILAMLSTNHRAVEEI--GDLGGVSCMLRIIRESTCDRNKENC  263 (323)
Q Consensus       193 ~~~~~----~i~~~g~v~~Lv~ll~-~~--~~~~~a~~~L~~l~~~~~~~~~i--~~~g~i~~Lv~ll~~~~~~~~~~~a  263 (323)
                      -+...    ..+..|.+..+..-.- .+  .++.++|.++.||-+++..+-+=  +.-.+.+.|..++.+..+-+++.+|
T Consensus       515 lq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~A  594 (728)
T KOG4535|consen  515 LQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKVRIRA  594 (728)
T ss_pred             HHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceEeehh
Confidence            22111    1111222222222111 12  68999999999999987542221  1123578888999876678899999


Q ss_pred             HHHHHHhcccC
Q 020640          264 IAILHTICLSD  274 (323)
Q Consensus       264 ~~~L~~L~~~~  274 (323)
                      +.+|..-....
T Consensus       595 A~aL~vp~~re  605 (728)
T KOG4535|consen  595 AAALSVPGKRE  605 (728)
T ss_pred             hhhhcCCCCcc
Confidence            99998765543

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=92.60  E-value=1.9  Score=43.56  Aligned_cols=121  Identities=12%  Similarity=0.099  Sum_probs=81.7

Q ss_pred             HHhhCchHHHHHHhhcC----------chHHHHHHHHHHHhcCHHHHHHHHhc--------CCHHHHHHHHhc---cCCh
Q 020640          199 AVRDGGVSVILKKIMDG----------VHVDELLAILAMLSTNHRAVEEIGDL--------GGVSCMLRIIRE---STCD  257 (323)
Q Consensus       199 i~~~g~v~~Lv~ll~~~----------~~~~~a~~~L~~l~~~~~~~~~i~~~--------g~i~~Lv~ll~~---~~~~  257 (323)
                      +...|++..++++....          ++...|+.+|+-+..-|+++.++...        .|+..++..-..   -.++
T Consensus       597 flkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i~Dp  676 (1516)
T KOG1832|consen  597 FLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSIPDIQKALAHATLSNNRAYDGIAIILDAANGSNSIVDP  676 (1516)
T ss_pred             HHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEecchHHHHHHHHHhhcccccCceEEEeecccccccccCH
Confidence            34446666677766532          34677888888888889888887532        145555544432   1248


Q ss_pred             hHHHHHHHHHHHhcccChHhHH----------------------------------HHHhhcccHHHHHHHhhcC-----
Q 020640          258 RNKENCIAILHTICLSDRTKWK----------------------------------AMREEESTHGTISKLAQDG-----  298 (323)
Q Consensus       258 ~~~~~a~~~L~~L~~~~~~~~~----------------------------------~~~~~~~~i~~L~~ll~~~-----  298 (323)
                      .++..|+.++.|+.+..|+.+.                                  ..++..++|..|++|++-.     
T Consensus       677 ei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k~P~t~  756 (1516)
T KOG1832|consen  677 EIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQYKNPPTT  756 (1516)
T ss_pred             HHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCc
Confidence            8999999999998776643221                                  1234678999999998764     


Q ss_pred             CHHHHHHHHHHHHHHhcchhh
Q 020640          299 TARAKRKATGILERLKRTVNL  319 (323)
Q Consensus       299 ~~~~~~~A~~~L~~l~~~~~~  319 (323)
                      .+.++.-|+..|--|++++..
T Consensus       757 aD~IRalAc~~L~GLaR~~tV  777 (1516)
T KOG1832|consen  757 ADCIRALACRVLLGLARDDTV  777 (1516)
T ss_pred             HHHHHHHHHHHHhccccCcHH
Confidence            367788888888877776544

>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes

Probab=92.46  E-value=4.6  Score=35.38  Aligned_cols=184  Identities=17%  Similarity=0.171  Sum_probs=110.4

Q ss_pred             HHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchhhhhhccCC-cHHHHHHHHhc----CCHHHHHHHHHHHHHhc
Q 020640           75 IPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPM-VIPLLMDALRS----GTIETRSNAAAALFTLS  149 (323)
Q Consensus        75 i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g-~i~~Lv~ll~~----~~~~~~~~a~~~L~~L~  149 (323)
                      ...+...+.+.      .++-+--++.+++-+..++.....+...++ ....+..++..    .++..+..+++++.|+-
T Consensus        65 ~~~~~~~~~~W------p~~~~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF  138 (268)
T PF08324_consen   65 LILLLKILLSW------PPESRFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLF  138 (268)
T ss_dssp             HHHHHHHHCCS-------CCC-HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhC------CCccchhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhh
Confidence            45556666544      234577788888887777765555544332 24445555543    46888999999999998


Q ss_pred             CCCCchhhhhc-cC-ChHHHHHHhhhc----CHhHHHHHHHHHHHhccCCc-hhH-HHHhhCchHHHHHHhh----cCch
Q 020640          150 ALDSNKEVIGK-SG-ALKPLIDLLDEG----HQSAMKDVASAIFNLCITHE-NKA-RAVRDGGVSVILKKIM----DGVH  217 (323)
Q Consensus       150 ~~~~~~~~i~~-~g-~i~~Lv~lL~~~----~~~~~~~al~aL~~L~~~~~-~~~-~i~~~g~v~~Lv~ll~----~~~~  217 (323)
                      .+...+..+.. .+ .+...+..+...    +..++..++..+.|++..-- .+. .-.....+..+++.+.    +++.
T Consensus       139 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea  218 (268)
T PF08324_consen  139 SHPPGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEA  218 (268)
T ss_dssp             TSCCCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHH
T ss_pred             CCCccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHH
Confidence            88888887776 33 344444433333    67889999999999965321 110 0011113444555332    2267


Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHhc-CCHHHHHHHHhccCChhHHHHHH
Q 020640          218 VDELLAILAMLSTNHRAVEEIGDL-GGVSCMLRIIRESTCDRNKENCI  264 (323)
Q Consensus       218 ~~~a~~~L~~l~~~~~~~~~i~~~-g~i~~Lv~ll~~~~~~~~~~~a~  264 (323)
                      ..+++.+|.++...++......+. |+-..+-..-..+..+++++.+.
T Consensus       219 ~~R~LvAlGtL~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~ri~~v~~  266 (268)
T PF08324_consen  219 LYRLLVALGTLLSSSDSAKQLAKSLDVKSVLSKKANKSKEPRIKEVAA  266 (268)
T ss_dssp             HHHHHHHHHHHHCCSHHHHHHCCCCTHHHHHHHHHHHTTSHHHHHHHH
T ss_pred             HHHHHHHHHHHhccChhHHHHHHHcChHHHHHHHHhcccchHHHHHhc
Confidence            888899999999877666666653 54444444444444466666554

It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]

Probab=92.29  E-value=0.96  Score=38.23  Aligned_cols=149  Identities=16%  Similarity=0.143  Sum_probs=97.7

Q ss_pred             HHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccc-hhhhhhccCCcHHH
Q 020640           47 QTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDN-NKKLVAETPMVIPL  125 (323)
Q Consensus        47 ~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~-~~~~i~~~~g~i~~  125 (323)
                      ..+|+..|.-++. .++.+..|.+ +..--.+..+|...+. .+..+.++..++.++..|-.+++ ....+.....++|.
T Consensus       117 vcnaL~lLQclaS-hPetk~~Fl~-AhiplflypfLntss~-~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPL  193 (315)
T COG5209         117 VCNALNLLQCLAS-HPETKKVFLD-AHIPLFLYPFLNTSSS-NSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPL  193 (315)
T ss_pred             HHHHHHHHHHHhc-Ccchheeeee-cccceeeHhhhhcccc-CCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHH
Confidence            4668888888885 6888999999 7655455566653210 04467789999999999987776 44444444558999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhc--------cCChHHHHHH-hhhcCHhHHHHHHHHHHHhccCCchh
Q 020640          126 LMDALRSGTIETRSNAAAALFTLSALDSNKEVIGK--------SGALKPLIDL-LDEGHQSAMKDVASAIFNLCITHENK  196 (323)
Q Consensus       126 Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~--------~g~i~~Lv~l-L~~~~~~~~~~al~aL~~L~~~~~~~  196 (323)
                      .++++..+++-.+.-++.++..+-.++..-..+.+        ...+..++.- .+.+.....++++++-..||.....|
T Consensus       194 cLrIme~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~p~aR  273 (315)
T COG5209         194 CLRIMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDKPHAR  273 (315)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCCHhHH
Confidence            99999999998888888888888776654333221        1122222222 22345566677777666666555544


Q ss_pred             HH
Q 020640          197 AR  198 (323)
Q Consensus       197 ~~  198 (323)
                      ..
T Consensus       274 ~l  275 (315)
T COG5209         274 AL  275 (315)
T ss_pred             HH
Confidence            43

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]

Probab=92.06  E-value=0.41  Score=40.40  Aligned_cols=99  Identities=11%  Similarity=0.078  Sum_probs=77.6

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHhc----cCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHH
Q 020640          218 VDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRE----STCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISK  293 (323)
Q Consensus       218 ~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~----~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~  293 (323)
                      .-.++.+|..++++|+.|..|+++-+--.|-.++..    +.-+.++..+.+.+..|..++....-.++....+++.+++
T Consensus       117 vcnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLr  196 (315)
T COG5209         117 VCNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLR  196 (315)
T ss_pred             HHHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHH
Confidence            456788888999999999999988643333344432    1225578899999999999887656677778899999999


Q ss_pred             HhhcCCHHHHHHHHHHHHHHhcc
Q 020640          294 LAQDGTARAKRKATGILERLKRT  316 (323)
Q Consensus       294 ll~~~~~~~~~~A~~~L~~l~~~  316 (323)
                      +...|++-.|.-|+.++..+-.-
T Consensus       197 Ime~gSElSktvaifI~qkil~d  219 (315)
T COG5209         197 IMELGSELSKTVAIFIFQKILGD  219 (315)
T ss_pred             HHHhhhHHHHHHHHHHHHHHhcc
Confidence            99999999999999998876543

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=91.95  E-value=16  Score=37.27  Aligned_cols=221  Identities=10%  Similarity=0.011  Sum_probs=142.3

Q ss_pred             CchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchhhhhhccCCc
Q 020640           43 TLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMV  122 (323)
Q Consensus        43 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~  122 (323)
                      .+..-.+|..++..++.....+...+..   .+...++.+.-     +..+.++..|+.++...+.......   ..+++
T Consensus       463 ~P~Ll~Ra~~~i~~fs~~~~~~~~~~~~---fl~~~v~~l~~-----~~~~~~ki~a~~~~~~~~~~~vl~~---~~p~i  531 (1005)
T KOG2274|consen  463 SPFLLLRAFLTISKFSSSTVINPQLLQH---FLNATVNALTM-----DVPPPVKISAVRAFCGYCKVKVLLS---LQPMI  531 (1005)
T ss_pred             CHHHHHHHHHHHHHHHhhhccchhHHHH---HHHHHHHhhcc-----CCCCchhHHHHHHHHhccCceeccc---cchHH
Confidence            3555568888888888654433322222   34445555542     4456788888888876662221111   12456


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhh--hcCHhHHHHHHHHHHHhccCCchhHHHH
Q 020640          123 IPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLD--EGHQSAMKDVASAIFNLCITHENKARAV  200 (323)
Q Consensus       123 i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~--~~~~~~~~~al~aL~~L~~~~~~~~~i~  200 (323)
                      +..|+.+....+.++......+|...+..+.-.....+..+.|..+.+..  ++++-+...+-.++-.|+....+...+.
T Consensus       532 ld~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~  611 (1005)
T KOG2274|consen  532 LDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPMQ  611 (1005)
T ss_pred             HHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcchH
Confidence            77777777777889999999999999887766666666767787777654  3577788888888888877444444444


Q ss_pred             hhCchHHHHHHhhcC------chHHHHHHHHHHHhcC--HHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHhcc
Q 020640          201 RDGGVSVILKKIMDG------VHVDELLAILAMLSTN--HRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICL  272 (323)
Q Consensus       201 ~~g~v~~Lv~ll~~~------~~~~~a~~~L~~l~~~--~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~  272 (323)
                      +. .+|.++..|...      ....-++.+|.-+..+  ++.-..++. -+.+++.+..-++++..+-+++-.+|..+..
T Consensus       612 e~-~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~-~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is  689 (1005)
T KOG2274|consen  612 ER-LIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLIC-YAFPAVAKITLHSDDHETLQNATECLRALIS  689 (1005)
T ss_pred             HH-HHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHH-HHhHHhHhheeecCChHHHHhHHHHHHHHHh
Confidence            43 889999998754      3455566666655553  232222322 2467777666545557777888888888877


Q ss_pred             cChH
Q 020640          273 SDRT  276 (323)
Q Consensus       273 ~~~~  276 (323)
                      .+.+
T Consensus       690 ~~~e  693 (1005)
T KOG2274|consen  690 VTLE  693 (1005)
T ss_pred             cCHH
Confidence            6544

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=91.44  E-value=1.5  Score=45.36  Aligned_cols=129  Identities=22%  Similarity=0.230  Sum_probs=100.5

Q ss_pred             CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchhhhhhccCC
Q 020640           42 ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPM  121 (323)
Q Consensus        42 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g  121 (323)
                      ++|+.|..|..+|.+++--+.+++    +  ..+|.|+..+..     ++++.++.+++-++.-++..-++   +++ . 
T Consensus       935 sdp~Lq~AAtLaL~klM~iSa~fc----e--s~l~llftimek-----sp~p~IRsN~VvalgDlav~fpn---lie-~-  998 (1251)
T KOG0414|consen  935 SDPELQAAATLALGKLMCISAEFC----E--SHLPLLFTIMEK-----SPSPRIRSNLVVALGDLAVRFPN---LIE-P-  998 (1251)
T ss_pred             CCHHHHHHHHHHHHHHhhhhHHHH----H--HHHHHHHHHHhc-----CCCceeeecchheccchhhhccc---ccc-h-
Confidence            458889999999999986555443    3  458889999975     67899999999999888764433   333 2 


Q ss_pred             cHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHHhc
Q 020640          122 VIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLC  190 (323)
Q Consensus       122 ~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~  190 (323)
                      +-+.|.+.|.++++.+++.|..+|.+|-.++-    +--.|-+..+..+|.++++.++..|=.....|+
T Consensus       999 ~T~~Ly~rL~D~~~~vRkta~lvlshLILndm----iKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els 1063 (1251)
T KOG0414|consen  999 WTEHLYRRLRDESPSVRKTALLVLSHLILNDM----IKVKGQLSEMALCLEDPNAEISDLAKSFFKELS 1063 (1251)
T ss_pred             hhHHHHHHhcCccHHHHHHHHHHHHHHHHhhh----hHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhh
Confidence            56778889999999999999999999976552    222789999999999999988888875554444

>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes

Probab=91.43  E-value=1.4  Score=38.66  Aligned_cols=155  Identities=21%  Similarity=0.200  Sum_probs=98.2

Q ss_pred             chhHHHHHHHHHHHhccChhhHHHHhhhcC-CHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchhhhhhccCC-
Q 020640           44 LPDQTEAAKELRLLTKRMPSFRALFGESHD-AIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPM-  121 (323)
Q Consensus        44 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g-~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g-  121 (323)
                      .+.+..++..++-+..+ +.....+....+ ....+..++.....  +..+..+.-+++++.|+-.+...+..+....+ 
T Consensus        77 ~~~~fP~lDLlRl~~l~-~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~  153 (268)
T PF08324_consen   77 PESRFPALDLLRLAALH-PPASDLLASEDSGIADLLSTLISSGSS--SSPPANQMLALRLLANLFSHPPGRQLLLSHFDS  153 (268)
T ss_dssp             CCC-HHHHHHHHHHCCC-HCHHHHHHSTTTH-HHHHHHHHHCCTT--TSSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHT
T ss_pred             CccchhHHhHHHHHHhC-ccHHHHHhccccchHHHHHHHHHhccC--CCcHHHHHHHHHHHHHhhCCCccHHHHHhcccc
Confidence            34567788888888764 444445544122 35666666655432  45788899999999999888888888887543 


Q ss_pred             cHHHHHHHHhcC----CHHHHHHHHHHHHHhcCCC--CchhhhhccCChHHHHHHhhh--cCHhHHHHHHHHHHHhccCC
Q 020640          122 VIPLLMDALRSG----TIETRSNAAAALFTLSALD--SNKEVIGKSGALKPLIDLLDE--GHQSAMKDVASAIFNLCITH  193 (323)
Q Consensus       122 ~i~~Lv~ll~~~----~~~~~~~a~~~L~~L~~~~--~~~~~i~~~g~i~~Lv~lL~~--~~~~~~~~al~aL~~L~~~~  193 (323)
                      .+...+..+...    +..++..++..+.|++..-  .....-.....+..+++.+..  .++++...++-+|++|...+
T Consensus       154 ~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~  233 (268)
T PF08324_consen  154 SILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTLLSSS  233 (268)
T ss_dssp             CHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCS
T ss_pred             hHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhccC
Confidence            222222222333    6788889999999997421  111111112245566664332  58999999999999999777


Q ss_pred             chhHHHHh
Q 020640          194 ENKARAVR  201 (323)
Q Consensus       194 ~~~~~i~~  201 (323)
                      +.......
T Consensus       234 ~~~~~~~~  241 (268)
T PF08324_consen  234 DSAKQLAK  241 (268)
T ss_dssp             HHHHHHCC
T ss_pred             hhHHHHHH
Confidence            66666655

It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=90.99  E-value=1.1  Score=45.33  Aligned_cols=153  Identities=16%  Similarity=0.205  Sum_probs=95.2

Q ss_pred             hHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHH
Q 020640           64 FRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAA  143 (323)
Q Consensus        64 ~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~  143 (323)
                      +|..|..  ..+|.|++...+.      ....+..-+.+|.++-.+-.....+-+.+...|.|++.|.-++..++..+..
T Consensus       860 ykQRfF~--~ivP~l~~~~~t~------~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~  931 (1030)
T KOG1967|consen  860 YKQRFFC--DIVPILVSKFETA------PGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLR  931 (1030)
T ss_pred             HHHHHHH--hhHHHHHHHhccC------CccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhh
Confidence            4444444  4788888877732      3344555555665554433333333333456788888888889999888888


Q ss_pred             HHHHhcCCCCchhhhhccCChHHHHHHhhhcC---HhHHHHHHHHHHHhccC-CchhHHHHhhCchHHHHHHhhcC--ch
Q 020640          144 ALFTLSALDSNKEVIGKSGALKPLIDLLDEGH---QSAMKDVASAIFNLCIT-HENKARAVRDGGVSVILKKIMDG--VH  217 (323)
Q Consensus       144 ~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~---~~~~~~al~aL~~L~~~-~~~~~~i~~~g~v~~Lv~ll~~~--~~  217 (323)
                      ++..+......-..---...+|.++.+=++.+   ..++..|+.+|..|++. +.....-.+-.++..|...|+++  -+
T Consensus       932 ~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlV 1011 (1030)
T KOG1967|consen  932 TIPMLLTESETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLV 1011 (1030)
T ss_pred             hhhHHHHhccccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHH
Confidence            88887543322111111346677766655543   67899999999999984 33333333345777788888876  46


Q ss_pred             HHHHHHH
Q 020640          218 VDELLAI  224 (323)
Q Consensus       218 ~~~a~~~  224 (323)
                      |+.|+++
T Consensus      1012 R~eAv~t 1018 (1030)
T KOG1967|consen 1012 RKEAVDT 1018 (1030)
T ss_pred             HHHHHHH
Confidence            7777653

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=90.70  E-value=12  Score=38.05  Aligned_cols=264  Identities=12%  Similarity=0.069  Sum_probs=139.9

Q ss_pred             HHHHHHHhcCC-chhHHHHHHHHHHHhcc-ChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhcccc
Q 020640           33 FLSLLKKMSAT-LPDQTEAAKELRLLTKR-MPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHD  110 (323)
Q Consensus        33 i~~Lv~~l~~~-~~~~~~a~~~L~~l~~~-~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~  110 (323)
                      ++....+++.. ...+..+..-...++.. +...+..+.. ...+|.+-.+..      +.+..++...+.....++-.-
T Consensus       357 ~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~-~~ilp~~~~lv~------d~~~~vr~a~a~~~~~~~p~~  429 (759)
T KOG0211|consen  357 VPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPD-SSILPEVQVLVL------DNALHVRSALASVITGLSPIL  429 (759)
T ss_pred             hhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccch-hhhhHHHHHHHh------cccchHHHHHhccccccCccC
Confidence            34444555432 34444444444444421 1122334444 455677776666      667777777776666554222


Q ss_pred             chhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-CCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHHh
Q 020640          111 NNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSAL-DSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNL  189 (323)
Q Consensus       111 ~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L  189 (323)
                      . +..-...  ..|.++..+++..+.++....+.+..+-.. +......+....++.+..+-.....+++...+..+..+
T Consensus       430 ~-k~~ti~~--llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~l  506 (759)
T KOG0211|consen  430 P-KERTISE--LLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQL  506 (759)
T ss_pred             C-cCcCccc--cChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHH
Confidence            2 2222221  467778888888999999888877666322 22233334445677777776666778888888888888


Q ss_pred             ccCCchhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHH
Q 020640          190 CITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAIL  267 (323)
Q Consensus       190 ~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L  267 (323)
                      +....  ..+......+.+..-+.+.  .+++.|...+..++..-. ...-.. -.++.++.+...++ -..+...+.++
T Consensus       507 a~q~~--~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G-~~w~~~-~~i~k~L~~~~q~~-y~~R~t~l~si  581 (759)
T KOG0211|consen  507 ALQLG--VEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFG-SEWARL-EEIPKLLAMDLQDN-YLVRMTTLFSI  581 (759)
T ss_pred             HHhhh--hHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhC-cchhHH-HhhHHHHHHhcCcc-cchhhHHHHHH
Confidence            76544  2222221222222222222  456666666666554211 111111 12444444444322 33444444444


Q ss_pred             HHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 020640          268 HTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKR  315 (323)
Q Consensus       268 ~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~  315 (323)
                      ..++.--..   ++. .....+.+..+..+..++++-+++..|..+.+
T Consensus       582 ~~la~v~g~---ei~-~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~  625 (759)
T KOG0211|consen  582 HELAEVLGQ---EIT-CEDLLPVFLDLVKDPVANVRINVAKHLPKILK  625 (759)
T ss_pred             HHHHHHhcc---HHH-HHHHhHHHHHhccCCchhhhhhHHHHHHHHHh
Confidence            444332211   222 23567777777777788888888777776654

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length

Probab=90.49  E-value=8.8  Score=33.00  Aligned_cols=138  Identities=15%  Similarity=0.041  Sum_probs=86.2

Q ss_pred             HHHHH-HhhhcCHhHHHHHHHHHHHhccCC-chhHHHHhhCchHHHHHHhhcCch--HHHHHHHHHHHhcCHHHHHHHHh
Q 020640          165 KPLID-LLDEGHQSAMKDVASAIFNLCITH-ENKARAVRDGGVSVILKKIMDGVH--VDELLAILAMLSTNHRAVEEIGD  240 (323)
Q Consensus       165 ~~Lv~-lL~~~~~~~~~~al~aL~~L~~~~-~~~~~i~~~g~v~~Lv~ll~~~~~--~~~a~~~L~~l~~~~~~~~~i~~  240 (323)
                      +.|+- +-+..+++.....+.+|..++.++ .+...+++     .|..+...+..  ..-+.+.+..+-..++..   . 
T Consensus         3 ~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~v~~-----~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~---f-   73 (234)
T PF12530_consen    3 PLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPPVLQ-----TLVSLVEQGSLELRYVALRLLTLLWKANDRH---F-   73 (234)
T ss_pred             HHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhHHHH-----HHHHHHcCCchhHHHHHHHHHHHHHHhCchH---H-
Confidence            34444 334468899999999999999988 55444443     45555555533  335566666665532111   1 


Q ss_pred             cCCHHHHHHH--Hh---c--cC--ChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHh-hcCCHHHHHHHHHHH
Q 020640          241 LGGVSCMLRI--IR---E--ST--CDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLA-QDGTARAKRKATGIL  310 (323)
Q Consensus       241 ~g~i~~Lv~l--l~---~--~~--~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll-~~~~~~~~~~A~~~L  310 (323)
                       +.++.++..  ++   .  +.  ..+.....+..+..+|...|++      ....++.+..++ +++++.++..|..+|
T Consensus        74 -~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~------g~~ll~~ls~~L~~~~~~~~~alale~l  146 (234)
T PF12530_consen   74 -PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDH------GVDLLPLLSGCLNQSCDEVAQALALEAL  146 (234)
T ss_pred             -HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhh------HHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence             333433333  11   1  11  1223445567888888888762      345778888888 788999999999999


Q ss_pred             HHHhcchh
Q 020640          311 ERLKRTVN  318 (323)
Q Consensus       311 ~~l~~~~~  318 (323)
                      .-|++...
T Consensus       147 ~~Lc~~~v  154 (234)
T PF12530_consen  147 APLCEAEV  154 (234)
T ss_pred             HHHHHHhh
Confidence            99986543

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.09  E-value=22  Score=35.63  Aligned_cols=220  Identities=16%  Similarity=0.174  Sum_probs=118.8

Q ss_pred             hHHHHHHHHhc--C--CchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhccccc----C-------CCCCHHH
Q 020640           31 DHFLSLLKKMS--A--TLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKC----E-------NGINPNL   95 (323)
Q Consensus        31 ~~i~~Lv~~l~--~--~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~----~-------~~~~~~~   95 (323)
                      .++..|.....  .  +...+.-.+..++..+..++..+..+.+      .+.++|.+.+.    |       -+.+|..
T Consensus       203 rAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~~i~------~i~~lL~stssaV~fEaa~tlv~lS~~p~a  276 (948)
T KOG1058|consen  203 RALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKARYIR------CIYNLLSSTSSAVIFEAAGTLVTLSNDPTA  276 (948)
T ss_pred             HHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhhHHHH------HHHHHHhcCCchhhhhhcceEEEccCCHHH
Confidence            34555444441  2  2445566666666666666655555444      24444542111    0       0456777


Q ss_pred             HHHHHHHHHHhcccc-c-hhhhhhccC-------------CcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhc
Q 020640           96 QEDVITTLLNLSIHD-N-NKKLVAETP-------------MVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGK  160 (323)
Q Consensus        96 ~~~a~~~L~~ls~~~-~-~~~~i~~~~-------------g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~  160 (323)
                      ...|+..+..|.... + |.+.|+...             |.+--++++|.+++-+++..+..+...|....        
T Consensus       277 lk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssr--------  348 (948)
T KOG1058|consen  277 LKAAASTYIDLLVKESDNNVKLIVLDRLSELKALHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSR--------  348 (948)
T ss_pred             HHHHHHHHHHHHHhccCcchhhhhHHHHHHHhhhhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhc--------
Confidence            777777766654332 2 333332110             11112334445666667777666666665433        


Q ss_pred             cCChHHHHHHhhh-----------cCHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcCchH--HHHHHHHHH
Q 020640          161 SGALKPLIDLLDE-----------GHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDGVHV--DELLAILAM  227 (323)
Q Consensus       161 ~g~i~~Lv~lL~~-----------~~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~--~~a~~~L~~  227 (323)
                        -+..++.+|+.           ++..-+..-+.+|...+...+.    +.+.+++.|++.+.+.+..  ...+..+..
T Consensus       349 --Nvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~----~aatvV~~ll~fisD~N~~aas~vl~FvrE  422 (948)
T KOG1058|consen  349 --NVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPE----VAATVVSLLLDFISDSNEAAASDVLMFVRE  422 (948)
T ss_pred             --cHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChH----HHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence              24445555442           2455678888888887664432    3345788899999876432  223333333


Q ss_pred             Hhc-CHHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHhcccCh
Q 020640          228 LST-NHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDR  275 (323)
Q Consensus       228 l~~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~  275 (323)
                      .-. .|.-|..++     ..|++-+..-.+.+.-+.|+|++..-|....
T Consensus       423 ~iek~p~Lr~~ii-----~~l~~~~~~irS~ki~rgalwi~GeYce~~~  466 (948)
T KOG1058|consen  423 AIEKFPNLRASII-----EKLLETFPQIRSSKICRGALWILGEYCEGLS  466 (948)
T ss_pred             HHHhCchHHHHHH-----HHHHHhhhhhcccccchhHHHHHHHHHhhhH
Confidence            322 455555554     4455444332236788899999988887765

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=89.60  E-value=1.9  Score=41.80  Aligned_cols=102  Identities=21%  Similarity=0.218  Sum_probs=56.8

Q ss_pred             cchhhhhHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHH
Q 020640           25 ITEADRDHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTL  103 (323)
Q Consensus        25 ~~~~~~~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L  103 (323)
                      ++.....++..++++.. +|..+|..|+..|-.+|++++++...+.+      .|+++|.      ++++......-.+|
T Consensus        53 FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kvaD------vL~QlL~------tdd~~E~~~v~~sL  120 (556)
T PF05918_consen   53 FPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKVAD------VLVQLLQ------TDDPVELDAVKNSL  120 (556)
T ss_dssp             -GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHHHH------HHHHHTT---------HHHHHHHHHHH
T ss_pred             ChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHHHH------HHHHHHh------cccHHHHHHHHHHH
Confidence            34455678889999985 67889999999999999887776654444      6888998      55555444444455


Q ss_pred             HHhccccchhhhhhccCCcHHHHHHHHh---cCCHHHHHHHHHHHH
Q 020640          104 LNLSIHDNNKKLVAETPMVIPLLMDALR---SGTIETRSNAAAALF  146 (323)
Q Consensus       104 ~~ls~~~~~~~~i~~~~g~i~~Lv~ll~---~~~~~~~~~a~~~L~  146 (323)
                      ..+-..+ .+       +.+..+...+.   ++++.+++.++..|.
T Consensus       121 ~~ll~~d-~k-------~tL~~lf~~i~~~~~~de~~Re~~lkFl~  158 (556)
T PF05918_consen  121 MSLLKQD-PK-------GTLTGLFSQIESSKSGDEQVRERALKFLR  158 (556)
T ss_dssp             HHHHHH--HH-------HHHHHHHHHHH---HS-HHHHHHHHHHHH
T ss_pred             HHHHhcC-cH-------HHHHHHHHHHHhcccCchHHHHHHHHHHH
Confidence            4442211 11       12233333333   455666666666554

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=89.55  E-value=3.2  Score=43.22  Aligned_cols=141  Identities=21%  Similarity=0.166  Sum_probs=100.0

Q ss_pred             CHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchhhhhhccCCcHHHHHHHHh-cCCHHHHHHHHHHHHHhcCCC
Q 020640           74 AIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALR-SGTIETRSNAAAALFTLSALD  152 (323)
Q Consensus        74 ~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~-~~~~~~~~~a~~~L~~L~~~~  152 (323)
                      ..|.++...+...-  ..+|+++..|.-+|..+-.-.   ..+++.  ..|.|+.++. ++++.++.++.-++..|+.--
T Consensus       920 f~piv~e~c~n~~~--~sdp~Lq~AAtLaL~klM~iS---a~fces--~l~llftimeksp~p~IRsN~VvalgDlav~f  992 (1251)
T KOG0414|consen  920 FAPIVVEGCRNPGL--FSDPELQAAATLALGKLMCIS---AEFCES--HLPLLFTIMEKSPSPRIRSNLVVALGDLAVRF  992 (1251)
T ss_pred             HHHHHHHHhcCCCc--CCCHHHHHHHHHHHHHHhhhh---HHHHHH--HHHHHHHHHhcCCCceeeecchheccchhhhc
Confidence            45666666654433  668999999999998774432   345554  3899999997 789999999999999997422


Q ss_pred             CchhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHHhccCCchhHHHHhh-CchHHHHHHhhcC--chHHHHHHHHHHHh
Q 020640          153 SNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRD-GGVSVILKKIMDG--VHVDELLAILAMLS  229 (323)
Q Consensus       153 ~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~i~~~-g~v~~Lv~ll~~~--~~~~~a~~~L~~l~  229 (323)
                      +|   +++. .-+.|...|++.++.+++.|+..|.+|-..+     ++.. |.+..+...|.++  .++.-|=.....|+
T Consensus       993 pn---lie~-~T~~Ly~rL~D~~~~vRkta~lvlshLILnd-----miKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els 1063 (1251)
T KOG0414|consen  993 PN---LIEP-WTEHLYRRLRDESPSVRKTALLVLSHLILND-----MIKVKGQLSEMALCLEDPNAEISDLAKSFFKELS 1063 (1251)
T ss_pred             cc---ccch-hhHHHHHHhcCccHHHHHHHHHHHHHHHHhh-----hhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhh
Confidence            21   2332 4567788888899999999999999997644     3443 8888888888887  34444444444444


Q ss_pred             c
Q 020640          230 T  230 (323)
Q Consensus       230 ~  230 (323)
                      .
T Consensus      1064 ~ 1064 (1251)
T KOG0414|consen 1064 S 1064 (1251)
T ss_pred             h
Confidence            3

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=89.46  E-value=28  Score=35.91  Aligned_cols=137  Identities=10%  Similarity=0.061  Sum_probs=87.2

Q ss_pred             CcHHHHHHHHh------cC--CHHHHHHHHHHHHHhcC---CCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHHh
Q 020640          121 MVIPLLMDALR------SG--TIETRSNAAAALFTLSA---LDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNL  189 (323)
Q Consensus       121 g~i~~Lv~ll~------~~--~~~~~~~a~~~L~~L~~---~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L  189 (323)
                      |.++.++.++.      .+  ++.-+..|..++.+|+.   ..+.-+..++.-.++.++..++++..-.+..|++.+..+
T Consensus       410 k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~  489 (1010)
T KOG1991|consen  410 KILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQF  489 (1010)
T ss_pred             hHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHH
Confidence            46778888886      22  56667788888888862   222223344444667777778888888999999999999


Q ss_pred             ccCC-chhHHHHhhCchHHHHHHhh-cC--chHHHHHHHHHHHhcC-HHHHHHHHhc--CCHHHHHHHHhccCChhH
Q 020640          190 CITH-ENKARAVRDGGVSVILKKIM-DG--VHVDELLAILAMLSTN-HRAVEEIGDL--GGVSCMLRIIRESTCDRN  259 (323)
Q Consensus       190 ~~~~-~~~~~i~~~g~v~~Lv~ll~-~~--~~~~~a~~~L~~l~~~-~~~~~~i~~~--g~i~~Lv~ll~~~~~~~~  259 (323)
                      +.-+ .+...+.+  ++......|. +.  .++-.|+-+|.-+-++ +.....+..+  +.++.|+++.++-.++.+
T Consensus       490 ~~~df~d~~~l~~--ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~L  564 (1010)
T KOG1991|consen  490 SSIDFKDPNNLSE--ALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDL  564 (1010)
T ss_pred             HhccCCChHHHHH--HHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHH
Confidence            8433 33333222  3344555555 44  5777788888877765 4444445443  567888888876443433

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=89.33  E-value=5.5  Score=40.11  Aligned_cols=195  Identities=15%  Similarity=0.105  Sum_probs=119.1

Q ss_pred             HHHHhccccc-hhhhhhccCCcHHHHHHHHhc-CCHHHHHHHHHHHHHhcCCCCchhhhhccCChH--HHHHHhhhc-CH
Q 020640          102 TLLNLSIHDN-NKKLVAETPMVIPLLMDALRS-GTIETRSNAAAALFTLSALDSNKEVIGKSGALK--PLIDLLDEG-HQ  176 (323)
Q Consensus       102 ~L~~ls~~~~-~~~~i~~~~g~i~~Lv~ll~~-~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~--~Lv~lL~~~-~~  176 (323)
                      +|+++..... +++.+.+.+| ...+...++. .+.+.+..+.+.+.+++...+++.......-+.  ..-.++..- +.
T Consensus       494 ~l~~~t~~~~~~C~~~l~~~g-~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~  572 (699)
T KOG3665|consen  494 ALWNITDENPETCKEFLDNGG-MKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSI  572 (699)
T ss_pred             HHHhhhcCCHHHHHHHHhccc-HHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchh
Confidence            6667765544 7888888776 8889999874 577889999999999987665544443322222  222233333 33


Q ss_pred             hHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcCchHHHHHHHHHHHhc-CHHHHHHHHhcCCHHH-HHHHHhcc
Q 020640          177 SAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDGVHVDELLAILAMLST-NHRAVEEIGDLGGVSC-MLRIIRES  254 (323)
Q Consensus       177 ~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~g~i~~-Lv~ll~~~  254 (323)
                      +....+...|+.+..+.+.   ..+.             ..++.+...+..... .+.....+.....+.. +..++..+
T Consensus       573 ersY~~~siLa~ll~~~~~---~~~~-------------~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s  636 (699)
T KOG3665|consen  573 ERSYNAASILALLLSDSEK---TTEC-------------VFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLS  636 (699)
T ss_pred             hHHHHHHHHHHHHHhCCCc---Cccc-------------cchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhccc
Confidence            6677777777776554433   1111             122223222222222 2222222222222233 66666666


Q ss_pred             CChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhc-CCHHHHHHHHHHHHHHh
Q 020640          255 TCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQD-GTARAKRKATGILERLK  314 (323)
Q Consensus       255 ~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~~A~~~L~~l~  314 (323)
                      ..+..+--|++++.+++...++ ..+.+.+.++++.+.++-.. ....++..+...+.+..
T Consensus       637 ~~~g~~lWal~ti~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  696 (699)
T KOG3665|consen  637 KSDGSQLWALWTIKNVLEQNKE-YCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIESCE  696 (699)
T ss_pred             CCCchHHHHHHHHHHHHHcChh-hhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhhccc
Confidence            6688899999999999999987 66777788999998887533 36666777666665543

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=89.02  E-value=26  Score=34.94  Aligned_cols=117  Identities=15%  Similarity=0.105  Sum_probs=75.3

Q ss_pred             CHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCC
Q 020640           74 AIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDS  153 (323)
Q Consensus        74 ~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~  153 (323)
                      .+..++..+-.+.+  +.+..++...+.+|..++........-+-+ +....+..-+.+..+.++..|..+|..+-..+.
T Consensus        82 lV~~~f~hlLRg~E--skdk~VRfrvlqila~l~d~~~eidd~vfn-~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~  158 (892)
T KOG2025|consen   82 LVAGTFYHLLRGTE--SKDKKVRFRVLQILALLSDENAEIDDDVFN-KLNEKLLIRLKDREPNVRIQAVLALSRLQGDPK  158 (892)
T ss_pred             HHHHHHHHHHhccc--CcchhHHHHHHHHHHHHhccccccCHHHHH-HHHHHHHHHHhccCchHHHHHHHHHHHHhcCCC
Confidence            44445444433443  788999999999999887633333333332 355666666677788999999999999964332


Q ss_pred             chhhhhccCChHHHHHHhhh-cCHhHHHHHHHHHHHhccCCchhHHHH
Q 020640          154 NKEVIGKSGALKPLIDLLDE-GHQSAMKDVASAIFNLCITHENKARAV  200 (323)
Q Consensus       154 ~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~al~aL~~L~~~~~~~~~i~  200 (323)
                      +    -+..++..+..+++. ++++++..++.   |++-++.....++
T Consensus       159 d----ee~~v~n~l~~liqnDpS~EVRRaaLs---nI~vdnsTlp~Iv  199 (892)
T KOG2025|consen  159 D----EECPVVNLLKDLIQNDPSDEVRRAALS---NISVDNSTLPCIV  199 (892)
T ss_pred             C----CcccHHHHHHHHHhcCCcHHHHHHHHH---hhccCcccchhHH
Confidence            1    113467788888876 48889988766   4444554444443

>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised

Probab=88.44  E-value=2.2  Score=36.53  Aligned_cols=83  Identities=22%  Similarity=0.257  Sum_probs=63.0

Q ss_pred             HHHHHHHHHHHHHhccccchhhhhhccCC------cHHHHHHHHh-cCCHHHHHHHHHHHHHhcCCCCch--hhhhccCC
Q 020640           93 PNLQEDVITTLLNLSIHDNNKKLVAETPM------VIPLLMDALR-SGTIETRSNAAAALFTLSALDSNK--EVIGKSGA  163 (323)
Q Consensus        93 ~~~~~~a~~~L~~ls~~~~~~~~i~~~~g------~i~~Lv~ll~-~~~~~~~~~a~~~L~~L~~~~~~~--~~i~~~g~  163 (323)
                      -.-|..|+.+|..|+..+.|...+...+.      ++..|++++. .+++-.++-|+.+|.+|+..++..  ....+.++
T Consensus       138 lSPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~  217 (257)
T PF12031_consen  138 LSPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC  217 (257)
T ss_pred             CCHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence            45789999999999999888877776543      2223455554 458899999999999999877653  33345889


Q ss_pred             hHHHHHHhhhcC
Q 020640          164 LKPLIDLLDEGH  175 (323)
Q Consensus       164 i~~Lv~lL~~~~  175 (323)
                      |..|+.++.+..
T Consensus       218 i~~Li~FiE~a~  229 (257)
T PF12031_consen  218 ISHLIAFIEDAE  229 (257)
T ss_pred             HHHHHHHHHHHH
Confidence            999999998753

This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=87.80  E-value=1.7  Score=43.94  Aligned_cols=116  Identities=19%  Similarity=0.199  Sum_probs=83.1

Q ss_pred             cccchhhhhHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCC-HHHHHHHH
Q 020640           23 EGITEADRDHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGIN-PNLQEDVI  100 (323)
Q Consensus        23 ~~~~~~~~~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~-~~~~~~a~  100 (323)
                      ++..|......|.|++.|+ .|..+|..++.++..+....+.....-.+  -.+|.++.+=+.+    +.+ ..+++.|+
T Consensus       901 ~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~--Tlvp~lLsls~~~----~n~~~~VR~~AL  974 (1030)
T KOG1967|consen  901 QVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLS--TLVPYLLSLSSDN----DNNMMVVREDAL  974 (1030)
T ss_pred             HhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHh--HHHHHHHhcCCCC----CcchhHHHHHHH
Confidence            4445556678899999997 88999999999999998776655544444  3677777765522    222 77999999


Q ss_pred             HHHHHhccccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHH
Q 020640          101 TTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAA  144 (323)
Q Consensus       101 ~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~  144 (323)
                      ..|..|...-..+....-.+.++..|+..|.++..-+++.|+.+
T Consensus       975 qcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen  975 QCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred             HHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence            99999987444333222234478888899888877888888765

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=87.69  E-value=31  Score=35.05  Aligned_cols=210  Identities=13%  Similarity=0.062  Sum_probs=120.8

Q ss_pred             CCCHHHHHHHHHHHHHhccccc-hhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHH
Q 020640           90 GINPNLQEDVITTLLNLSIHDN-NKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLI  168 (323)
Q Consensus        90 ~~~~~~~~~a~~~L~~ls~~~~-~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv  168 (323)
                      ++++.++......+..+-...+ .....+... .+|.++.+-....-.++....+.+..++....  ..+.+...-+.+.
T Consensus       448 de~~~V~lnli~~ls~~~~v~~v~g~~~~s~s-lLp~i~el~~d~~wRvr~ail~~ip~la~q~~--~~~~~~~~~~l~~  524 (759)
T KOG0211|consen  448 DEDPIVRLNLIDKLSLLEEVNDVIGISTVSNS-LLPAIVELAEDLLWRVRLAILEYIPQLALQLG--VEFFDEKLAELLR  524 (759)
T ss_pred             hhhHHHHHhhHHHHHHHHhccCcccchhhhhh-hhhhhhhhccchhHHHHHHHHHHHHHHHHhhh--hHHhhHHHHHHHH
Confidence            6778888888766654432222 222333322 57777777666667777778888888775432  2333322233333


Q ss_pred             HHhhhcCHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcC--chHHHHHH---HHHHHhcCHHHHHHHHhcCC
Q 020640          169 DLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLA---ILAMLSTNHRAVEEIGDLGG  243 (323)
Q Consensus       169 ~lL~~~~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~---~L~~l~~~~~~~~~i~~~g~  243 (323)
                      ..+.+..-+++.+|+..+..++.... ..-.. ...++.++.....+  -.+...+.   .|+.+...+-..+     ..
T Consensus       525 ~~l~d~v~~Ir~~aa~~l~~l~~~~G-~~w~~-~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei~~~-----~L  597 (759)
T KOG0211|consen  525 TWLPDHVYSIREAAARNLPALVETFG-SEWAR-LEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEITCE-----DL  597 (759)
T ss_pred             hhhhhhHHHHHHHHHHHhHHHHHHhC-cchhH-HHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHHHHH-----HH
Confidence            34444456788889988888766444 11111 12344444444432  33443333   4444444443333     34


Q ss_pred             HHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHh
Q 020640          244 VSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLK  314 (323)
Q Consensus       244 i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~  314 (323)
                      ++.+.++..+.. +.++-+++..|..+...-..   .. .+..+.+.+..+..+.+..++..|..++..+.
T Consensus       598 lp~~~~l~~D~v-anVR~nvak~L~~i~~~L~~---~~-~~~~v~pll~~L~~d~~~dvr~~a~~a~~~i~  663 (759)
T KOG0211|consen  598 LPVFLDLVKDPV-ANVRINVAKHLPKILKLLDE---SV-RDEEVLPLLETLSSDQELDVRYRAILAFGSIE  663 (759)
T ss_pred             hHHHHHhccCCc-hhhhhhHHHHHHHHHhhcch---HH-HHHHHHHHHHHhccCcccchhHHHHHHHHHHH
Confidence            577777777654 88999999998887664422   22 23456666666767667777777776665543

>KOG1566 consensus Conserved protein Mo25 [Function unknown]

Probab=87.58  E-value=20  Score=32.02  Aligned_cols=219  Identities=11%  Similarity=0.081  Sum_probs=139.0

Q ss_pred             hhhhHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCC-HHHHHHhhcccccCCCCCHHHHHHHHHHHHH
Q 020640           28 ADRDHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDA-IPQLLSPLSESKCENGINPNLQEDVITTLLN  105 (323)
Q Consensus        28 ~~~~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~-i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~  105 (323)
                      ...|....|+..+. -+-+.+..++....++-+.....|...++--.. .+.+-.+++..    ...+++.-.+-..+..
T Consensus        76 ~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~----~~~~~iaL~cg~mlrE  151 (342)
T KOG1566|consen   76 YNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGY----ENTPEIALTCGNMLRE  151 (342)
T ss_pred             HhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhh----ccchHHHHHHHHHHHH
Confidence            34456666777663 455667777777777766554444332221111 22223333321    1125555555555666


Q ss_pred             hccccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhc-CCCCchhhhhccC---C-hHHHHHHhhhcCHhHHH
Q 020640          106 LSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLS-ALDSNKEVIGKSG---A-LKPLIDLLDEGHQSAMK  180 (323)
Q Consensus       106 ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~-~~~~~~~~i~~~g---~-i~~Lv~lL~~~~~~~~~  180 (323)
                      ...++.-.+.+..+. .........+.++-++...|..+...+. .+......+...+   . .+.--.++.+++--++.
T Consensus       152 cirhe~LakiiL~s~-~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkr  230 (342)
T KOG1566|consen  152 CIRHEFLAKIILEST-NFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKR  230 (342)
T ss_pred             HHhhHHHHHHHHcch-hHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHH
Confidence            555555555666655 4777888888888899999999998885 4433333333322   2 33466678888888999


Q ss_pred             HHHHHHHHhccCCchhHHHHh----hCchHHHHHHhhcC--chHHHHHHHHHHHhcC----HHHHHHHHhcCCHHHHHHH
Q 020640          181 DVASAIFNLCITHENKARAVR----DGGVSVILKKIMDG--VHVDELLAILAMLSTN----HRAVEEIGDLGGVSCMLRI  250 (323)
Q Consensus       181 ~al~aL~~L~~~~~~~~~i~~----~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~----~~~~~~i~~~g~i~~Lv~l  250 (323)
                      .++.+|..+-.+..|-..+..    -..+..++.+|+++  .++-.|.-+..-...+    .+.+..++.+.  +.|+++
T Consensus       231 qs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpnK~q~V~~IL~~Nr--~KLl~~  308 (342)
T KOG1566|consen  231 QSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPNKPQPVRDILVRNR--PKLLEL  308 (342)
T ss_pred             HHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCCCCchHHHHHHhCc--HHHHHH
Confidence            999999999888877666543    25778899999876  7888888888777765    36666677664  566666


Q ss_pred             Hhc
Q 020640          251 IRE  253 (323)
Q Consensus       251 l~~  253 (323)
                      +..
T Consensus       309 l~~  311 (342)
T KOG1566|consen  309 LHD  311 (342)
T ss_pred             HHH
Confidence            654

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=87.05  E-value=34  Score=34.12  Aligned_cols=129  Identities=12%  Similarity=0.067  Sum_probs=78.0

Q ss_pred             ccCChHHHHHHhhhcCHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcC---chHHHHHHHHHHHhcCHHHHH
Q 020640          160 KSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG---VHVDELLAILAMLSTNHRAVE  236 (323)
Q Consensus       160 ~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~---~~~~~a~~~L~~l~~~~~~~~  236 (323)
                      ...++|.|...++..+..++..++..+..++..=+  ...+..-.+|.+.++....   .++..++.++..+..      
T Consensus       387 ~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD--~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q------  458 (700)
T KOG2137|consen  387 KEKILPLLYRSLEDSDVQIQELALQILPTVAESID--VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQ------  458 (700)
T ss_pred             HHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc--HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHH------
Confidence            34567777777777788888889988888765444  3334444566666653322   467777777777771      


Q ss_pred             HHHhcCCHHHHHHHH---hccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCC
Q 020640          237 EIGDLGGVSCMLRII---RESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGT  299 (323)
Q Consensus       237 ~i~~~g~i~~Lv~ll---~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~  299 (323)
                      .+-..-+++.+.-++   +..+ +.+......+...+....++- .+++ -+.+++.++-+...+.
T Consensus       459 ~lD~~~v~d~~lpi~~~~~~~d-p~iv~~~~~i~~~l~~~~~~g-~ev~-~~~VlPlli~ls~~~~  521 (700)
T KOG2137|consen  459 RLDKAAVLDELLPILKCIKTRD-PAIVMGFLRIYEALALIIYSG-VEVM-AENVLPLLIPLSVAPS  521 (700)
T ss_pred             HHHHHHhHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHhhcccc-eeee-hhhhhhhhhhhhhccc
Confidence            111122333343333   3333 777777788877777766431 1222 3578888888776664

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=86.82  E-value=5.6  Score=32.16  Aligned_cols=109  Identities=14%  Similarity=0.081  Sum_probs=67.3

Q ss_pred             CHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchhhhh-hccCCcHHHHHHHHhcC-CHHHHHHHHHHHHHhc--
Q 020640           74 AIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLV-AETPMVIPLLMDALRSG-TIETRSNAAAALFTLS--  149 (323)
Q Consensus        74 ~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i-~~~~g~i~~Lv~ll~~~-~~~~~~~a~~~L~~L~--  149 (323)
                      .+..+..+|+      +.++.-+-.++..+..+....+ ...+ ...+-++..++.+|+.+ ++.+.+.++.+|..+-  
T Consensus        26 l~~ri~~LL~------s~~~~~rw~G~~Ll~~~~~~~~-~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~   98 (165)
T PF08167_consen   26 LVTRINSLLQ------SKSAYSRWAGLCLLKVTVEQCS-WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDL   98 (165)
T ss_pred             HHHHHHHHhC------CCChhhHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence            3455777777      6678888888888887754432 2333 22234677788888765 5677888888888874  


Q ss_pred             --CCCCchhhhhc---cCChHHHHHHhhhcCHhHHHHHHHHHHHhcc
Q 020640          150 --ALDSNKEVIGK---SGALKPLIDLLDEGHQSAMKDVASAIFNLCI  191 (323)
Q Consensus       150 --~~~~~~~~i~~---~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~  191 (323)
                        ..++...++..   .+.++.++++++.  ......++.+|..+-.
T Consensus        99 ~~~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~  143 (165)
T PF08167_consen   99 IRGKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLP  143 (165)
T ss_pred             hcCCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHH
Confidence              33443444433   3344555555553  4566667777766643

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=86.80  E-value=3.9  Score=33.13  Aligned_cols=108  Identities=19%  Similarity=0.169  Sum_probs=69.7

Q ss_pred             cHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhc--cCChHHHHHHhhhc-CHhHHHHHHHHHHHhccCCchhHH
Q 020640          122 VIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGK--SGALKPLIDLLDEG-HQSAMKDVASAIFNLCITHENKAR  198 (323)
Q Consensus       122 ~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~--~g~i~~Lv~lL~~~-~~~~~~~al~aL~~L~~~~~~~~~  198 (323)
                      .+..+..+|++.+.+.+..++..+.......+ .+.+.+  ..-+..|+..|+.. ...+.+.++.+|..|...-.....
T Consensus        26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~-~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~  104 (165)
T PF08167_consen   26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS-WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPT  104 (165)
T ss_pred             HHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence            45667888899999999999999888876432 233333  33567888888875 556788888888777543333333


Q ss_pred             HHhh-------CchHHHHHHhhcCchHHHHHHHHHHHhc
Q 020640          199 AVRD-------GGVSVILKKIMDGVHVDELLAILAMLST  230 (323)
Q Consensus       199 i~~~-------g~v~~Lv~ll~~~~~~~~a~~~L~~l~~  230 (323)
                      +.++       +.++.++.++++....+.++.+|..+-.
T Consensus       105 l~Rei~tp~l~~~i~~ll~l~~~~~~~~~~l~~L~~ll~  143 (165)
T PF08167_consen  105 LTREIATPNLPKFIQSLLQLLQDSSCPETALDALATLLP  143 (165)
T ss_pred             hHHHHhhccHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence            3222       3455555566544566666666666554

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=86.78  E-value=8.5  Score=38.17  Aligned_cols=129  Identities=13%  Similarity=0.096  Sum_probs=83.8

Q ss_pred             HHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhc
Q 020640          135 IETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMD  214 (323)
Q Consensus       135 ~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~  214 (323)
                      ..+.+-+++.+..|-..+..-. ++ .|.+..+++-..+++..++..++..|.-+.........-+-.+....+..-+.+
T Consensus        60 dRIl~fla~fv~sl~q~d~e~D-lV-~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~D  137 (892)
T KOG2025|consen   60 DRILSFLARFVESLPQLDKEED-LV-AGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKD  137 (892)
T ss_pred             HHHHHHHHHHHHhhhccCchhh-HH-HHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhc
Confidence            3455555555555543332111 22 346667777777788999999999999988755444444444555566655555


Q ss_pred             C--chHHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHH
Q 020640          215 G--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHT  269 (323)
Q Consensus       215 ~--~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~  269 (323)
                      .  .++.+|+-+|+.+-.++..-    +..++..++.+++.++++++++.|+..+..
T Consensus       138 rep~VRiqAv~aLsrlQ~d~~de----e~~v~n~l~~liqnDpS~EVRRaaLsnI~v  190 (892)
T KOG2025|consen  138 REPNVRIQAVLALSRLQGDPKDE----ECPVVNLLKDLIQNDPSDEVRRAALSNISV  190 (892)
T ss_pred             cCchHHHHHHHHHHHHhcCCCCC----cccHHHHHHHHHhcCCcHHHHHHHHHhhcc
Confidence            4  78999999999887532110    113467788888877779999887765543

>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]

Probab=86.71  E-value=24  Score=32.89  Aligned_cols=152  Identities=11%  Similarity=0.049  Sum_probs=102.1

Q ss_pred             hHHHHHHhhhcC-HhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhh--cC----------chHHHHHHHHHHHhc
Q 020640          164 LKPLIDLLDEGH-QSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIM--DG----------VHVDELLAILAMLST  230 (323)
Q Consensus       164 i~~Lv~lL~~~~-~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~--~~----------~~~~~a~~~L~~l~~  230 (323)
                      -..+++.|..+. ...+..++.+++-|+++...-..+...-.++.|+.+-.  ++          .+...++.+|+|+..
T Consensus        47 ~e~i~~Vle~~~p~t~~v~~LetvrILSRdk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlvf  126 (532)
T KOG4464|consen   47 GERIFEVLENGEPLTHRVVCLETVRILSRDKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLVF  126 (532)
T ss_pred             HHHHHHHHhcCCCchhhhhHHHHHHHHhccccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHHh
Confidence            346777777765 44567788888888887765544433333444444332  11          357889999999999


Q ss_pred             C-HHHHHHHHhcCCHHHHHHHHhc----cCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcC-------
Q 020640          231 N-HRAVEEIGDLGGVSCMLRIIRE----STCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDG-------  298 (323)
Q Consensus       231 ~-~~~~~~i~~~g~i~~Lv~ll~~----~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~-------  298 (323)
                      + +..|..+.+......+++.+..    ..-...+--=+..|.-|+.-..+.+.+++.+.++.+.+.+|+.+.       
T Consensus       127 ~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led~lgidse~  206 (532)
T KOG4464|consen  127 HSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLEDKLGIDSEI  206 (532)
T ss_pred             ccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhccccCCCCc
Confidence            5 6888888887666666655532    111334555667777777777777888988999999999997552       


Q ss_pred             -----CHHHHHHHHHHHHHHhc
Q 020640          299 -----TARAKRKATGILERLKR  315 (323)
Q Consensus       299 -----~~~~~~~A~~~L~~l~~  315 (323)
                           +++--..|..+|+.+..
T Consensus       207 n~~~l~pqe~n~a~EaLK~~FN  228 (532)
T KOG4464|consen  207 NVPPLNPQETNRACEALKVFFN  228 (532)
T ss_pred             CCCCCCHHHHHHHHHHHHHHhh
Confidence                 12556677777777654

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=86.29  E-value=37  Score=33.61  Aligned_cols=175  Identities=17%  Similarity=0.196  Sum_probs=103.0

Q ss_pred             hhhhhHHHHHHHHhc-CC--------------------chhHHHHHHHHHHHhccChhhHHHHhhh--cCCHHHHHHhhc
Q 020640           27 EADRDHFLSLLKKMS-AT--------------------LPDQTEAAKELRLLTKRMPSFRALFGES--HDAIPQLLSPLS   83 (323)
Q Consensus        27 ~~~~~~i~~Lv~~l~-~~--------------------~~~~~~a~~~L~~l~~~~~~~~~~i~~~--~g~i~~Lv~lL~   83 (323)
                      |.+......++..++ ++                    .+++-.|+..|+.+..+...+-..+-.+  ...+..++..+.
T Consensus       520 ~d~~~~~eeil~li~~s~~~~~e~~~~l~~l~~l~~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~  599 (745)
T KOG0301|consen  520 PDEINGLEEILSLIKNSSHYSSEVLQSLLALAILLQWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN  599 (745)
T ss_pred             cchhhhHHHHHHhhcCCCCccchhHHHHHHHHHHhcCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc
Confidence            455566677777764 21                    2335567888888877655433322210  123334444333


Q ss_pred             ccccCCCCCHHHHHHHHHHHHHhccccchhhhhhccCCcHHHHHHHH---hcC-CHHHHHHHHHHHHHhc--CCCCchhh
Q 020640           84 ESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDAL---RSG-TIETRSNAAAALFTLS--ALDSNKEV  157 (323)
Q Consensus        84 ~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll---~~~-~~~~~~~a~~~L~~L~--~~~~~~~~  157 (323)
                             .++..+..+++.|.|+-.++-.+..+...   ...+...+   ++. +..++...+....|++  ....+-. 
T Consensus       600 -------~~~an~ll~vR~L~N~f~~~~g~~~~~s~---~~~i~~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~~-  668 (745)
T KOG0301|consen  600 -------ADPANQLLVVRCLANLFSNPAGRELFMSR---LESILDPVIEASSLSNKNLQIALATLALNYSVLLIQDNEQ-  668 (745)
T ss_pred             -------cchhHHHHHHHHHHHhccCHHHHHHHHHH---HHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhcccc-
Confidence                   25778889999999998776667666553   22232222   332 3455555555555554  2222111 


Q ss_pred             hhccCChHHHHHHhhh-----cCHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcC
Q 020640          158 IGKSGALKPLIDLLDE-----GHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG  215 (323)
Q Consensus       158 i~~~g~i~~Lv~lL~~-----~~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~  215 (323)
                         .++.+.|...+..     ++-+.....+-||.+|+..+....++...-.+..++..+++.
T Consensus       669 ---~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~~~~~~A~~~~v~sia~~~~~~  728 (745)
T KOG0301|consen  669 ---LEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDASVIQLAKNRSVDSIAKKLKEA  728 (745)
T ss_pred             ---cchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccHHHHHHHHhcCHHHHHHHHHHh
Confidence               4556666665543     244567778889999999988888887766777787777654

>KOG2956 consensus CLIP-associating protein [General function prediction only]

Probab=86.22  E-value=31  Score=32.67  Aligned_cols=182  Identities=14%  Similarity=0.115  Sum_probs=103.6

Q ss_pred             HHHHHHHHhcCC--chhHHHHHHHHHHHhccC-hhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhcc
Q 020640           32 HFLSLLKKMSAT--LPDQTEAAKELRLLTKRM-PSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSI  108 (323)
Q Consensus        32 ~i~~Lv~~l~~~--~~~~~~a~~~L~~l~~~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~  108 (323)
                      .+..++..++++  .+.+..|+..|..+...+ ...+.....  ..+..+++.|..     +.+...+..|+++|..++.
T Consensus       287 ~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~--~iL~~l~EvL~d-----~~~~~~k~laLrvL~~ml~  359 (516)
T KOG2956|consen  287 LVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFA--EILLLLLEVLSD-----SEDEIIKKLALRVLREMLT  359 (516)
T ss_pred             HHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHH--HHHHHHHHHHcc-----chhhHHHHHHHHHHHHHHH
Confidence            444455555433  556778888676666444 333443333  356678888883     4788899999999999876


Q ss_pred             ccchhhhhhccC-CcHHHHHHHHhcCCHHHHHHHHH-HHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHH
Q 020640          109 HDNNKKLVAETP-MVIPLLMDALRSGTIETRSNAAA-ALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAI  186 (323)
Q Consensus       109 ~~~~~~~i~~~~-g~i~~Lv~ll~~~~~~~~~~a~~-~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL  186 (323)
                      ....+  ++... -++..++..-++.++++...|.. ++..++.+.+.+       .|..+..++...+...-..++..+
T Consensus       360 ~Q~~~--l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~-------~I~~i~~~Ilt~D~~~~~~~iKm~  430 (516)
T KOG2956|consen  360 NQPAR--LFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQ-------CIVNISPLILTADEPRAVAVIKML  430 (516)
T ss_pred             hchHh--hhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchh-------HHHHHhhHHhcCcchHHHHHHHHH
Confidence            54322  22210 12333334434455555544443 445555555422       234444444445556666677777


Q ss_pred             HHhccCCchhHHHHh--hCchHHHHHHhhcC--chHHHHHHHHHHHhc
Q 020640          187 FNLCITHENKARAVR--DGGVSVILKKIMDG--VHVDELLAILAMLST  230 (323)
Q Consensus       187 ~~L~~~~~~~~~i~~--~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~  230 (323)
                      ..++..-. +..+..  ....|.+++...+.  .+++.++-+|-.|..
T Consensus       431 Tkl~e~l~-~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~  477 (516)
T KOG2956|consen  431 TKLFERLS-AEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVN  477 (516)
T ss_pred             HHHHhhcC-HHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHH
Confidence            76655332 112211  24778888877755  678888877776654

>PF13251 DUF4042: Domain of unknown function (DUF4042)

Probab=85.80  E-value=16  Score=30.13  Aligned_cols=141  Identities=18%  Similarity=0.136  Sum_probs=83.3

Q ss_pred             hHHHHHHHHHHHhccCh-----hhHHHHhh-h----cCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchhhh
Q 020640           46 DQTEAAKELRLLTKRMP-----SFRALFGE-S----HDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKL  115 (323)
Q Consensus        46 ~~~~a~~~L~~l~~~~~-----~~~~~i~~-~----~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~  115 (323)
                      +|..|+.+|..+++..+     .++..|.- .    ...-+.|+..+-.     ++++.++..|+.+|..|-.+....-.
T Consensus         2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~-----Dp~~kvR~aA~~~l~~lL~gsk~~L~   76 (182)
T PF13251_consen    2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILK-----DPSPKVRAAAASALAALLEGSKPFLA   76 (182)
T ss_pred             hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHc-----CCchhHHHHHHHHHHHHHHccHHHHH
Confidence            57788888888886522     22233332 0    2244455544432     77899999999999887433211000


Q ss_pred             hhc-----cCC--------------cHHHHHHHHhcC-CHHHHHHHHHHHHHhcCCCCchhhhhccCChHHH----HHHh
Q 020640          116 VAE-----TPM--------------VIPLLMDALRSG-TIETRSNAAAALFTLSALDSNKEVIGKSGALKPL----IDLL  171 (323)
Q Consensus       116 i~~-----~~g--------------~i~~Lv~ll~~~-~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~L----v~lL  171 (323)
                      ..+     .+.              ....|+..|+.+ +..+....++++..|...-.....  +.|.++.+    -.++
T Consensus        77 ~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL--~~~ll~~~v~~v~~~l  154 (182)
T PF13251_consen   77 QAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRL--PPGLLTEVVTQVRPLL  154 (182)
T ss_pred             HHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhc--CHhHHHHHHHHHHHHH
Confidence            000     001              223456666654 678888999999998765442111  23444444    4455


Q ss_pred             hhcCHhHHHHHHHHHHHhccCC
Q 020640          172 DEGHQSAMKDVASAIFNLCITH  193 (323)
Q Consensus       172 ~~~~~~~~~~al~aL~~L~~~~  193 (323)
                      .+.|..++..++.++..+....
T Consensus       155 ~~~d~~v~v~~l~~~~~l~s~~  176 (182)
T PF13251_consen  155 RHRDPNVRVAALSCLGALLSVQ  176 (182)
T ss_pred             hcCCCcHHHHHHHHHHHHHcCC
Confidence            6678889999999888876543

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=85.67  E-value=5.7  Score=39.27  Aligned_cols=153  Identities=14%  Similarity=0.158  Sum_probs=89.2

Q ss_pred             CChHHHHHHhhhc--CHhHHHHHHHHHHHhccCCc---hhHHH----Hhh-----C----chHHHHHHhhcC--chHHHH
Q 020640          162 GALKPLIDLLDEG--HQSAMKDVASAIFNLCITHE---NKARA----VRD-----G----GVSVILKKIMDG--VHVDEL  221 (323)
Q Consensus       162 g~i~~Lv~lL~~~--~~~~~~~al~aL~~L~~~~~---~~~~i----~~~-----g----~v~~Lv~ll~~~--~~~~~a  221 (323)
                      |.+-.|+..+...  .....+-....|.++..+..   +...+    +..     |    -...++.+|++.  .++-..
T Consensus       240 ~~~aeli~~isde~n~~~l~edi~~~l~~l~fn~~d~~Gpk~islFl~kls~l~p~i~lrq~~~~~~LLdses~tlRc~~  319 (1128)
T COG5098         240 GLIAELIPSISDELNRCALKEDIPVLLKNLSFNLPDLSGPKDISLFLNKLSELSPGIMLRQYEHFDELLDSESFTLRCCF  319 (1128)
T ss_pred             HHHHHHHHHhHHHhhhhhhhcccHHHHhhceeecccccChHHHHHHHHHHhhcCchHHHHHHHHHHHHhcccchhHHHHH
Confidence            3444455555442  34455556667777766542   11111    111     1    134577778766  455555


Q ss_pred             HHHHHHHhcCHHHHHHHHhc--CCHHHHHHHHhc---cCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhh
Q 020640          222 LAILAMLSTNHRAVEEIGDL--GGVSCMLRIIRE---STCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQ  296 (323)
Q Consensus       222 ~~~L~~l~~~~~~~~~i~~~--g~i~~Lv~ll~~---~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~  296 (323)
                      +.+++|+..+-....+++++  .-+..|+.++.+   +.++.++.+|...+..++..+..   ..-..+.++...+..++
T Consensus       320 ~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk---~~~~r~ev~~lv~r~lq  396 (1128)
T COG5098         320 LEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSK---TVGRRHEVIRLVGRRLQ  396 (1128)
T ss_pred             HHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCccc---ccchHHHHHHHHHHHhh
Confidence            66666666542222233331  124444444432   23588999999999988876532   22223456777788899


Q ss_pred             cCCHHHHHHHHHHHHHHh-cch
Q 020640          297 DGTARAKRKATGILERLK-RTV  317 (323)
Q Consensus       297 ~~~~~~~~~A~~~L~~l~-~~~  317 (323)
                      +.+..++++|..+++.|. +|+
T Consensus       397 Drss~VRrnaikl~SkLL~~HP  418 (1128)
T COG5098         397 DRSSVVRRNAIKLCSKLLMRHP  418 (1128)
T ss_pred             hhhHHHHHHHHHHHHHHHhcCC
Confidence            999999999999998775 443

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=85.52  E-value=32  Score=34.08  Aligned_cols=115  Identities=19%  Similarity=0.198  Sum_probs=65.4

Q ss_pred             CHHHHHHHHHHHHHhcc----cc-------chhhhhhccCCcHHHHHHHHh----cCCHHHHHHHHHHHHHhcCCCCchh
Q 020640           92 NPNLQEDVITTLLNLSI----HD-------NNKKLVAETPMVIPLLMDALR----SGTIETRSNAAAALFTLSALDSNKE  156 (323)
Q Consensus        92 ~~~~~~~a~~~L~~ls~----~~-------~~~~~i~~~~g~i~~Lv~ll~----~~~~~~~~~a~~~L~~L~~~~~~~~  156 (323)
                      ++.+...|+-.+..+..    ..       .....+.+.  +++.+...+.    ..+.+.+..++++|.|+..      
T Consensus       448 ~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~--~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~------  519 (618)
T PF01347_consen  448 SPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEK--YVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH------  519 (618)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHTT-----------SS--GG--GTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-------
T ss_pred             ChhHHHHHHHHHHHHhCceeecccccccccccchhhHHH--HHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC------
Confidence            45666666666666532    21       112223222  4666666665    3467888889999999853      


Q ss_pred             hhhccCChHHHHHHhhhc---CHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcC----chHHHHHHHH
Q 020640          157 VIGKSGALKPLIDLLDEG---HQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG----VHVDELLAIL  225 (323)
Q Consensus       157 ~i~~~g~i~~Lv~lL~~~---~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~----~~~~~a~~~L  225 (323)
                          ...++.|...+..+   +..++..|+.+|+.++.....+       +.+.+..++.+.    ++|..|..+|
T Consensus       520 ----~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~-------v~~~l~~I~~n~~e~~EvRiaA~~~l  584 (618)
T PF01347_consen  520 ----PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEK-------VREILLPIFMNTTEDPEVRIAAYLIL  584 (618)
T ss_dssp             ----GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHH-------HHHHHHHHHH-TTS-HHHHHHHHHHH
T ss_pred             ----chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHH-------HHHHHHHHhcCCCCChhHHHHHHHHH
Confidence                23678888877765   6778889999988774433221       233566766654    3455554433

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length

Probab=85.06  E-value=15  Score=29.48  Aligned_cols=139  Identities=13%  Similarity=0.086  Sum_probs=79.5

Q ss_pred             CChHHHHHHhhhc-CHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcCchHHHHHHHHHHHhcCHHHHHHHHh
Q 020640          162 GALKPLIDLLDEG-HQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDGVHVDELLAILAMLSTNHRAVEEIGD  240 (323)
Q Consensus       162 g~i~~Lv~lL~~~-~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~a~~~L~~l~~~~~~~~~i~~  240 (323)
                      ..++.|+++|+.+ +..++..++++|..|-.-++-+.+....+.- .-...-.+........   .+... ...-++..-
T Consensus        10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~-~~~~~~~~~~~~~~~l---~~~~~-~~~~ee~y~   84 (160)
T PF11865_consen   10 ELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLD-SKSSENSNDESTDISL---PMMGI-SPSSEEYYP   84 (160)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCC-ccccccccccchhhHH---hhccC-CCchHHHHH
Confidence            3567788888875 6899999999999986666655553322111 0000000001111111   11111 112333444


Q ss_pred             cCCHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHH
Q 020640          241 LGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKAT  307 (323)
Q Consensus       241 ~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~  307 (323)
                      .-++..|+.++++.+-..-...++.++.++.......+-..+  ..+++.++..++...+..++.--
T Consensus        85 ~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L--~~viP~~l~~i~~~~~~~~e~~~  149 (160)
T PF11865_consen   85 TVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYL--PQVIPIFLRVIRTCPDSLREFYF  149 (160)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHH--HHHhHHHHHHHHhCCHHHHHHHH
Confidence            445889999998754233455677777777654333344554  47999999999988777777633

It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=84.75  E-value=48  Score=33.60  Aligned_cols=204  Identities=17%  Similarity=0.147  Sum_probs=117.7

Q ss_pred             HHHHHHhcCC-chhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccch
Q 020640           34 LSLLKKMSAT-LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNN  112 (323)
Q Consensus        34 ~~Lv~~l~~~-~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~  112 (323)
                      ..|..+|.++ ...+.+|+..|..+..+..+..       ...|.+|+-.-      +.|.+++...---|..-+..+.+
T Consensus        38 ~dL~~lLdSnkd~~KleAmKRIia~iA~G~dvS-------~~Fp~VVKNVa------skn~EVKkLVyvYLlrYAEeqpd  104 (968)
T KOG1060|consen   38 DDLKQLLDSNKDSLKLEAMKRIIALIAKGKDVS-------LLFPAVVKNVA------SKNIEVKKLVYVYLLRYAEEQPD  104 (968)
T ss_pred             HHHHHHHhccccHHHHHHHHHHHHHHhcCCcHH-------HHHHHHHHHhh------ccCHHHHHHHHHHHHHHhhcCCC
Confidence            4577888533 4567888887777766555533       23445666666      77888887665555544543333


Q ss_pred             hhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHHhccC
Q 020640          113 KKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCIT  192 (323)
Q Consensus       113 ~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~  192 (323)
                      -..+     -|-.+-+-|+++++.++..|+++|..+-.      .++..=++-.+-+...+.++-+++.|+.|+-.|=.-
T Consensus       105 LALL-----SIntfQk~L~DpN~LiRasALRvlSsIRv------p~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsL  173 (968)
T KOG1060|consen  105 LALL-----SINTFQKALKDPNQLIRASALRVLSSIRV------PMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSL  173 (968)
T ss_pred             ceee-----eHHHHHhhhcCCcHHHHHHHHHHHHhcch------hhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcC
Confidence            2222     14456678899999999988888876622      112111122222334456889999999999888554


Q ss_pred             C-chhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHH
Q 020640          193 H-ENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHT  269 (323)
Q Consensus       193 ~-~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~  269 (323)
                      + +.+.++.+     .+-.+|.+.  .+.-.|+.+...+|  |+.-+.|-  +--..|+.++.+-+ +.-|.-....|..
T Consensus       174 d~e~k~qL~e-----~I~~LLaD~splVvgsAv~AF~evC--PerldLIH--knyrklC~ll~dvd-eWgQvvlI~mL~R  243 (968)
T KOG1060|consen  174 DPEQKDQLEE-----VIKKLLADRSPLVVGSAVMAFEEVC--PERLDLIH--KNYRKLCRLLPDVD-EWGQVVLINMLTR  243 (968)
T ss_pred             ChhhHHHHHH-----HHHHHhcCCCCcchhHHHHHHHHhc--hhHHHHhh--HHHHHHHhhccchh-hhhHHHHHHHHHH
Confidence            4 44444433     455566665  34555666555554  33333332  22456666665322 4445555555544


Q ss_pred             hc
Q 020640          270 IC  271 (323)
Q Consensus       270 L~  271 (323)
                      -|
T Consensus       244 YA  245 (968)
T KOG1060|consen  244 YA  245 (968)
T ss_pred             HH
Confidence            43

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=84.61  E-value=23  Score=36.26  Aligned_cols=145  Identities=16%  Similarity=0.160  Sum_probs=94.7

Q ss_pred             hHHHHHHHHhc--CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhcc
Q 020640           31 DHFLSLLKKMS--ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSI  108 (323)
Q Consensus        31 ~~i~~Lv~~l~--~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~  108 (323)
                      +.+-.+++-..  .+..+...|+.+|..++......-..+..  +..+.+++.+.      .....+++.+..++.....
T Consensus       294 ~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~--~v~p~lld~lk------ekk~~l~d~l~~~~d~~~n  365 (815)
T KOG1820|consen  294 GLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAK--NVFPSLLDRLK------EKKSELRDALLKALDAILN  365 (815)
T ss_pred             hHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHH--hhcchHHHHhh------hccHHHHHHHHHHHHHHHh
Confidence            34444444443  33556677888888888776655444444  57788888887      4566777777777665543


Q ss_pred             ccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCC--chhhhhccCChHHHHHHhhhcCHhHHHHHHHHH
Q 020640          109 HDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDS--NKEVIGKSGALKPLIDLLDEGHQSAMKDVASAI  186 (323)
Q Consensus       109 ~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~--~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL  186 (323)
                             ........+.++..+++.++..+..+...+.......+  +...-.-.+.++.++....+.+.+++..|..++
T Consensus       366 -------s~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~  438 (815)
T KOG1820|consen  366 -------STPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAV  438 (815)
T ss_pred             -------cccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHH
Confidence                   11111246778889999999999987777666543222  111111145677888888888999999999998


Q ss_pred             HHhc
Q 020640          187 FNLC  190 (323)
Q Consensus       187 ~~L~  190 (323)
                      ..+-
T Consensus       439 ~~v~  442 (815)
T KOG1820|consen  439 AAVM  442 (815)
T ss_pred             HHHH
Confidence            8763

>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule)

Probab=84.31  E-value=7.5  Score=30.16  Aligned_cols=72  Identities=8%  Similarity=0.113  Sum_probs=58.4

Q ss_pred             CHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhc---CCHHHHHHHHHHHHHHhc
Q 020640          243 GVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQD---GTARAKRKATGILERLKR  315 (323)
Q Consensus       243 ~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~---~~~~~~~~A~~~L~~l~~  315 (323)
                      ++..|-+-|+.++ +.++..|+.+|-.+..+....+...+....++..|++++..   .++.+++++..++.....
T Consensus        38 a~raL~krl~~~n-~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~  112 (133)
T cd03561          38 AARAIRKKIKYGN-PHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE  112 (133)
T ss_pred             HHHHHHHHHcCCC-HHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence            4677888888654 99999999999999988765566666566888889999875   489999999999988775

It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me

>KOG2933 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.21  E-value=9.3  Score=34.06  Aligned_cols=136  Identities=13%  Similarity=0.151  Sum_probs=89.2

Q ss_pred             ChHHHHHHhhhcCHhHHHHHHHHHHHhccCCc-hhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcC-HHHHHHH
Q 020640          163 ALKPLIDLLDEGHQSAMKDVASAIFNLCITHE-NKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTN-HRAVEEI  238 (323)
Q Consensus       163 ~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~-~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~-~~~~~~i  238 (323)
                      ++...+..|.+++......++..|..|+.... ....++.. .+-.+++-+++.  .+-..|+.++..|... ...-.. 
T Consensus        89 al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~-vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~-  166 (334)
T KOG2933|consen   89 ALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHE-VIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQ-  166 (334)
T ss_pred             HHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHH-HHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            56777888888889999999999999988664 33333333 566666666654  5777788888888763 222111 


Q ss_pred             HhcCCHHHHH-HHHhcc--CChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHH
Q 020640          239 GDLGGVSCML-RIIRES--TCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILER  312 (323)
Q Consensus       239 ~~~g~i~~Lv-~ll~~~--~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~  312 (323)
                          -+..++ .++..+  ++..+++.|-.+|..+..+-..        ...++.|...+++.+++++.+++....+
T Consensus       167 ----~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp--------~~~L~~L~~~~~~~n~r~r~~a~~~~~~  231 (334)
T KOG2933|consen  167 ----ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP--------QKLLRKLIPILQHSNPRVRAKAALCFSR  231 (334)
T ss_pred             ----HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh--------HHHHHHHHHHHhhhchhhhhhhhccccc
Confidence                123333 333222  2255789999999998886532        1245566677888888888888765443

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=83.95  E-value=13  Score=36.79  Aligned_cols=131  Identities=11%  Similarity=0.169  Sum_probs=84.7

Q ss_pred             CCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchhhhhhccCCcHHHHHHHH-hcCCHHHHHHHHHHHHHhcCC
Q 020640           73 DAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDAL-RSGTIETRSNAAAALFTLSAL  151 (323)
Q Consensus        73 g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll-~~~~~~~~~~a~~~L~~L~~~  151 (323)
                      .++|.|..-++      +.+..+|+.++..+-.++..-|  ...+... ++|.+-++. +..+..++..++-++..+...
T Consensus       389 ~IlplL~~S~~------~~~~~iQ~~~L~~lptv~e~iD--~~~vk~~-ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~  459 (700)
T KOG2137|consen  389 KILPLLYRSLE------DSDVQIQELALQILPTVAESID--VPFVKQA-ILPRLKNLAFKTTNLYVKVNVLPCLAGLIQR  459 (700)
T ss_pred             HHHHHHHHHhc------CcchhhHHHHHHhhhHHHHhcc--HHHHHHH-HHHHhhcchhcccchHHHHHHHHHHHHHHHH
Confidence            45565555555      7788899999998888876555  3333333 567666654 345778888888888888721


Q ss_pred             CCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcC
Q 020640          152 DSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG  215 (323)
Q Consensus       152 ~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~  215 (323)
                       -.+..+++  -+.++.+..+..++.+....+++..++.........++.+.++|.++.+...+
T Consensus       460 -lD~~~v~d--~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~  520 (700)
T KOG2137|consen  460 -LDKAAVLD--ELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAP  520 (700)
T ss_pred             -HHHHHhHH--HHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhcc
Confidence             11222222  24444555555688888888888887776665544555556888888877765

>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []

Probab=83.74  E-value=34  Score=31.08  Aligned_cols=161  Identities=19%  Similarity=0.163  Sum_probs=104.9

Q ss_pred             HHHHHHHhc-CCchhHHHHHHHHHHHhc-cChhhHHHHhhhcC-CHHHHHHhhcccccCCCCC-------HHHHHHHHHH
Q 020640           33 FLSLLKKMS-ATLPDQTEAAKELRLLTK-RMPSFRALFGESHD-AIPQLLSPLSESKCENGIN-------PNLQEDVITT  102 (323)
Q Consensus        33 i~~Lv~~l~-~~~~~~~~a~~~L~~l~~-~~~~~~~~i~~~~g-~i~~Lv~lL~~~~~~~~~~-------~~~~~~a~~~  102 (323)
                      ++.+-+.|+ ........++..|..++. .+....+.+.+.-+ -.+.+..++.....+....       +.++...+..
T Consensus        58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F  137 (330)
T PF11707_consen   58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF  137 (330)
T ss_pred             HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence            444555554 335566789999999998 55566666555234 3566777774321100110       3788888886


Q ss_pred             HHHhcc-cc-chhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHH-hcCCC----CchhhhhccCChHHHHHHhhhcC
Q 020640          103 LLNLSI-HD-NNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFT-LSALD----SNKEVIGKSGALKPLIDLLDEGH  175 (323)
Q Consensus       103 L~~ls~-~~-~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~-L~~~~----~~~~~i~~~g~i~~Lv~lL~~~~  175 (323)
                      +..+-. .+ ..+..+....+.+..+.+-+..+++++....+.+|.. +..++    ..|..+.....+..|..+...++
T Consensus       138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~  217 (330)
T PF11707_consen  138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG  217 (330)
T ss_pred             HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence            665433 22 2577777767778888888888889999999999885 43333    24666677778888888777665


Q ss_pred             H----hHHHHHHHHHHHhccCC
Q 020640          176 Q----SAMKDVASAIFNLCITH  193 (323)
Q Consensus       176 ~----~~~~~al~aL~~L~~~~  193 (323)
                      +    .+...+-..|..+|.++
T Consensus       218 ~~~~~~~~~~vh~fL~~lcT~p  239 (330)
T PF11707_consen  218 EDEKSSVADLVHEFLLALCTDP  239 (330)
T ss_pred             CcccchHHHHHHHHHHHHhcCC
Confidence            5    66777777777776544

The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.

>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning

Probab=83.71  E-value=6.2  Score=28.89  Aligned_cols=91  Identities=10%  Similarity=0.169  Sum_probs=61.0

Q ss_pred             HHHHHHHHHH-HHhccccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhh
Q 020640           94 NLQEDVITTL-LNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLD  172 (323)
Q Consensus        94 ~~~~~a~~~L-~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~  172 (323)
                      +++..|+.-+ ..+...--....+++..+.+..|+.....++......+...+..|..++.....+.+-|+.+.|-++=.
T Consensus         2 EIR~RAL~~I~~Kl~~~Li~~~dl~~~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr~   81 (98)
T PF14726_consen    2 EIRVRALESIEFKLEHGLISEEDLVKERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLRP   81 (98)
T ss_pred             hHHHHHHHHHHHHHHhccccHHHHccHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHHh
Confidence            4566665533 344433334444554344667777777888777888999999999999988888888999988766655


Q ss_pred             hcCHhHHHHHHH
Q 020640          173 EGHQSAMKDVAS  184 (323)
Q Consensus       173 ~~~~~~~~~al~  184 (323)
                      .-++..+...-.
T Consensus        82 ~~~~~~~~~id~   93 (98)
T PF14726_consen   82 NVEPNLQAEIDE   93 (98)
T ss_pred             cCCHHHHHHHHH
Confidence            444544444333

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=83.33  E-value=24  Score=34.46  Aligned_cols=100  Identities=12%  Similarity=0.135  Sum_probs=67.6

Q ss_pred             CChHHHHHHhhhcCHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcCHHHHHHHH
Q 020640          162 GALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIG  239 (323)
Q Consensus       162 g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~~~~~~~i~  239 (323)
                      |.+..++.-+.+++..++..++..|+.+...-......+-.|.+..|..-+-+.  .++..|+.+|+.+-..+.+-+-. 
T Consensus        91 ~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen~-  169 (885)
T COG5218          91 GTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEENR-  169 (885)
T ss_pred             HHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHHH-
Confidence            467777777888899999999999988866544444555556666666655444  67888888888776533222212 


Q ss_pred             hcCCHHHHHHHHhccCChhHHHHHHH
Q 020640          240 DLGGVSCMLRIIRESTCDRNKENCIA  265 (323)
Q Consensus       240 ~~g~i~~Lv~ll~~~~~~~~~~~a~~  265 (323)
                         ....|+.+++.++++++++.|+.
T Consensus       170 ---~~n~l~~~vqnDPS~EVRr~all  192 (885)
T COG5218         170 ---IVNLLKDIVQNDPSDEVRRLALL  192 (885)
T ss_pred             ---HHHHHHHHHhcCcHHHHHHHHHH
Confidence               23467777877666778876653

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=82.88  E-value=52  Score=32.60  Aligned_cols=164  Identities=16%  Similarity=0.204  Sum_probs=92.0

Q ss_pred             HHHHHHHHHHHHHhccccchhhhhhc-cC--CcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHH
Q 020640           93 PNLQEDVITTLLNLSIHDNNKKLVAE-TP--MVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLID  169 (323)
Q Consensus        93 ~~~~~~a~~~L~~ls~~~~~~~~i~~-~~--g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~  169 (323)
                      ++.+.-|+.+|+-+..+...-..+.. ..  .++..++..+. .++..+..++++|.|+-.++.+++.+...  ...+..
T Consensus       558 ~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~~~g~~~~~s~--~~~i~~  634 (745)
T KOG0301|consen  558 VEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSNPAGRELFMSR--LESILD  634 (745)
T ss_pred             HHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccCHHHHHHHHHH--HHHHhh
Confidence            45566777777766665543222222 11  12333333333 45778888999999998776666555442  222222


Q ss_pred             Hhh---h-cCHhHHHHHHHHHHHhcc--CCchhHHHHhhCchHHHHHHhhcC-------chHHHHHHHHHHHhcCHHHHH
Q 020640          170 LLD---E-GHQSAMKDVASAIFNLCI--THENKARAVRDGGVSVILKKIMDG-------VHVDELLAILAMLSTNHRAVE  236 (323)
Q Consensus       170 lL~---~-~~~~~~~~al~aL~~L~~--~~~~~~~i~~~g~v~~Lv~ll~~~-------~~~~~a~~~L~~l~~~~~~~~  236 (323)
                      .+.   . ++..+.........|++.  ..++-    +.|+.+.+...+...       +...+.+.+|-+|+..+....
T Consensus       635 ~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~----~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~~~~  710 (745)
T KOG0301|consen  635 PVIEASSLSNKNLQIALATLALNYSVLLIQDNE----QLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDASVI  710 (745)
T ss_pred             hhhhhhcccchhHHHHHHHHHHHHHHHHHhccc----ccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccHHHH
Confidence            221   2 233444433333333322  11111    146666666666532       234566788888888888888


Q ss_pred             HHHhcCCHHHHHHHHhccCChhHHHHH
Q 020640          237 EIGDLGGVSCMLRIIRESTCDRNKENC  263 (323)
Q Consensus       237 ~i~~~g~i~~Lv~ll~~~~~~~~~~~a  263 (323)
                      .+.+.-.++.+++-+++..+.+.....
T Consensus       711 ~~A~~~~v~sia~~~~~~~~~~~~k~~  737 (745)
T KOG0301|consen  711 QLAKNRSVDSIAKKLKEAVSNPSGKNI  737 (745)
T ss_pred             HHHHhcCHHHHHHHHHHhccCchhhHH
Confidence            888877799999988874433333333

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)

Probab=82.77  E-value=8.6  Score=30.27  Aligned_cols=72  Identities=6%  Similarity=0.095  Sum_probs=57.9

Q ss_pred             CHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhc-CCHHHHHHHHHHHHHHhc
Q 020640          243 GVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQD-GTARAKRKATGILERLKR  315 (323)
Q Consensus       243 ~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~~A~~~L~~l~~  315 (323)
                      ++..|.+-++.++ +.++..|+.+|-.+..+-.......+-+.+++..|.+++.. .++.+++++..++..-+.
T Consensus        42 a~ral~krl~~~n-~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~  114 (142)
T cd03569          42 AMRALKKRLLSKN-PNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL  114 (142)
T ss_pred             HHHHHHHHHcCCC-hHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence            5677888887654 99999999999998887544455556678999999999875 489999999999988764

The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)

Probab=82.76  E-value=8.3  Score=30.46  Aligned_cols=72  Identities=8%  Similarity=0.142  Sum_probs=58.3

Q ss_pred             CHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhc-CCHHHHHHHHHHHHHHhc
Q 020640          243 GVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQD-GTARAKRKATGILERLKR  315 (323)
Q Consensus       243 ~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~~A~~~L~~l~~  315 (323)
                      ++..|.+-+.+. ++.++..|+.+|-.+..+-...+..-+-...++..|.+++.. .++.++++...++...+.
T Consensus        38 a~ral~KRl~~~-n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~  110 (144)
T cd03568          38 CLKAIMKRLNHK-DPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWAD  110 (144)
T ss_pred             HHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence            466777777755 499999999999999887765555555577999999999988 699999999999888763

Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.

>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length

Probab=82.23  E-value=24  Score=32.70  Aligned_cols=176  Identities=11%  Similarity=0.024  Sum_probs=104.6

Q ss_pred             CHHHHHHHHHHHHHhcCCCCc---hhhhhccCChHHHHHHhhh-----------cCHhHHHHHHHHHHHhccCCchhHHH
Q 020640          134 TIETRSNAAAALFTLSALDSN---KEVIGKSGALKPLIDLLDE-----------GHQSAMKDVASAIFNLCITHENKARA  199 (323)
Q Consensus       134 ~~~~~~~a~~~L~~L~~~~~~---~~~i~~~g~i~~Lv~lL~~-----------~~~~~~~~al~aL~~L~~~~~~~~~i  199 (323)
                      +...+..|-..|.+.-...++   ...+.+  -++.+++.++.           .+.++...|+++|..+-.+++....+
T Consensus         6 ~~~~r~daY~~l~~~l~~~~~~~~~~~l~~--k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~~~l   83 (372)
T PF12231_consen    6 DRSSRLDAYMTLNNALKAYDNLPDRQALQD--KMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIVSTL   83 (372)
T ss_pred             CcHHHHHHHHHHHHHHHHhcCCCcHHHHHH--HHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHHhhC
Confidence            444555555555555322222   222222  35555555442           15567888999998887666544444


Q ss_pred             Hhh---CchHHHHHHhhcC-chHHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHhc----cCChhHHHHHHHHHHHhc
Q 020640          200 VRD---GGVSVILKKIMDG-VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRE----STCDRNKENCIAILHTIC  271 (323)
Q Consensus       200 ~~~---g~v~~Lv~ll~~~-~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~----~~~~~~~~~a~~~L~~L~  271 (323)
                      -+.   -.+...+..+.++ ..+.-+...|+-++...-..+ +.....+..++..+..    -.+..+....+.++.++.
T Consensus        84 ~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~-~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i~~~ll  162 (372)
T PF12231_consen   84 SDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPK-IMTSDRVERLLAALHNIKNRFPSKSIISERLNIYKRLL  162 (372)
T ss_pred             ChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCc-ccchhhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHH
Confidence            322   1345566666555 455566666666666432222 3333334444444332    223667888899999999


Q ss_pred             ccChHhHHHHHhhcc-cHHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 020640          272 LSDRTKWKAMREEES-THGTISKLAQDGTARAKRKATGILERLKR  315 (323)
Q Consensus       272 ~~~~~~~~~~~~~~~-~i~~L~~ll~~~~~~~~~~A~~~L~~l~~  315 (323)
                      ...|..   +..... +.+.++..+-+....++.+|..++..+..
T Consensus       163 ~q~p~~---M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~  204 (372)
T PF12231_consen  163 SQFPQQ---MIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKK  204 (372)
T ss_pred             HHHHHH---HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHH
Confidence            988763   444444 89999999888899999998888877753

Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=81.85  E-value=29  Score=34.61  Aligned_cols=130  Identities=15%  Similarity=0.134  Sum_probs=86.7

Q ss_pred             CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchhhhhhccCC
Q 020640           42 ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPM  121 (323)
Q Consensus        42 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g  121 (323)
                      +|+..+..|..+|..+.--+-+++      ..-+|.|+..+..     +++|.++.+|+-.|.-++..-.   ..++.  
T Consensus       908 sd~~lq~aA~l~L~klMClS~~fc------~ehlpllIt~mek-----~p~P~IR~NaVvglgD~~vcfN---~~~de--  971 (1128)
T COG5098         908 SDEELQVAAYLSLYKLMCLSFEFC------SEHLPLLITSMEK-----HPIPRIRANAVVGLGDFLVCFN---TTADE--  971 (1128)
T ss_pred             CCHHHHHHHHHHHHHHHHHhHHHH------HHHHHHHHHHHhh-----CCCcceeccceeeccccceehh---hhhHH--
Confidence            357778888888877764443332      2357888888865     5678888888877776543221   12221  


Q ss_pred             cHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHHhcc
Q 020640          122 VIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCI  191 (323)
Q Consensus       122 ~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~  191 (323)
                      .-+.|.+-|.+.+..++..|.-++..|-....    +--.|-++.+..+|.+++.++...|--.+..++.
T Consensus       972 ~t~yLyrrL~De~~~V~rtclmti~fLilagq----~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~ 1037 (1128)
T COG5098         972 HTHYLYRRLGDEDADVRRTCLMTIHFLILAGQ----LKVKGQLGKMALLLTDEDAEISDMARHFFTQIAK 1037 (1128)
T ss_pred             HHHHHHHHhcchhhHHHHHHHHHHHHHHHccc----eeeccchhhhHhhccCCcchHHHHHHHHHHHHHh
Confidence            34567777777788888888888888854332    2225667788888888888888777777766654

>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM

Probab=81.64  E-value=11  Score=29.52  Aligned_cols=72  Identities=10%  Similarity=0.156  Sum_probs=57.2

Q ss_pred             CHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcC-CHH---HHHHHHHHHHHHhc
Q 020640          243 GVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDG-TAR---AKRKATGILERLKR  315 (323)
Q Consensus       243 ~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~---~~~~A~~~L~~l~~  315 (323)
                      ++..|.+-|+.++ +.++..|+.+|-.+..+....+...+-...++..|.+++.+. ...   +++++..++.....
T Consensus        43 a~~~l~krl~~~~-~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~  118 (140)
T PF00790_consen   43 AARALRKRLKHGN-PNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE  118 (140)
T ss_dssp             HHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCC-HHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence            3567777888654 999999999999999988666666666778999999988765 444   89999888887764

Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)

Probab=81.29  E-value=8.5  Score=30.29  Aligned_cols=73  Identities=12%  Similarity=0.119  Sum_probs=59.2

Q ss_pred             hhHHHHHHHHhc-CCchhHHHHHHHHHHHhcc-ChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhc
Q 020640           30 RDHFLSLLKKMS-ATLPDQTEAAKELRLLTKR-MPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLS  107 (323)
Q Consensus        30 ~~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~-~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls  107 (323)
                      .+++..+.+.|. .++.++..|+..|-.+.++ .......+.+ .+.++.|+.++..     ..++.++..++..+...+
T Consensus        40 k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas-~~fl~~l~~l~~~-----~~~~~Vk~kil~li~~W~  113 (142)
T cd03569          40 KYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVAS-REFMDELKDLIKT-----TKNEEVRQKILELIQAWA  113 (142)
T ss_pred             HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhh-HHHHHHHHHHHcc-----cCCHHHHHHHHHHHHHHH
Confidence            368888888885 7789999999999888875 3456677888 8899999999874     357899999999998776


Q ss_pred             c
Q 020640          108 I  108 (323)
Q Consensus       108 ~  108 (323)
                      .
T Consensus       114 ~  114 (142)
T cd03569         114 L  114 (142)
T ss_pred             H
Confidence            3

The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length

Probab=81.21  E-value=34  Score=29.35  Aligned_cols=188  Identities=15%  Similarity=0.191  Sum_probs=103.6

Q ss_pred             CCCHHHHHHHHHHHHHhcccc-chhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHH
Q 020640           90 GINPNLQEDVITTLLNLSIHD-NNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLI  168 (323)
Q Consensus        90 ~~~~~~~~~a~~~L~~ls~~~-~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv  168 (323)
                      ..+++.+...+..|..++.++ .+...      ++..|..+...++.+...-+.+.+..+...++ +..    +.++.++
T Consensus        12 ~~~~~~~~~~L~~L~~l~~~~~~~~~~------v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~-r~f----~~L~~~L   80 (234)
T PF12530_consen   12 ISDPELQLPLLEALPSLACHKNVCVPP------VLQTLVSLVEQGSLELRYVALRLLTLLWKAND-RHF----PFLQPLL   80 (234)
T ss_pred             CCChHHHHHHHHHHHHHhccCccchhH------HHHHHHHHHcCCchhHHHHHHHHHHHHHHhCc-hHH----HHHHHHH
Confidence            668999999999999999877 33332      34456666667777766667777777754332 111    3444444


Q ss_pred             HHh--h------h--cCHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHh-hcC--chHHHHHHHHHHHhcCHHHH
Q 020640          169 DLL--D------E--GHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKI-MDG--VHVDELLAILAMLSTNHRAV  235 (323)
Q Consensus       169 ~lL--~------~--~~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll-~~~--~~~~~a~~~L~~l~~~~~~~  235 (323)
                      ..+  +      +  ...+.......++..+|...+++..    ..++.+..+| .+.  ..+..++.+|..+|..    
T Consensus        81 ~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g~----~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~----  152 (234)
T PF12530_consen   81 LLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDHGV----DLLPLLSGCLNQSCDEVAQALALEALAPLCEA----  152 (234)
T ss_pred             HHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhhHH----HHHHHHHHHHhccccHHHHHHHHHHHHHHHHH----
Confidence            441  1      1  1334445556678888887766221    2566777788 444  5678888899999832    


Q ss_pred             HHHHhc-CCHHHHHHHHhccCChhHHHHHHHHHHHhcccC--hHhHHHHHhhcccHHHHHHHhhcCC
Q 020640          236 EEIGDL-GGVSCMLRIIRESTCDRNKENCIAILHTICLSD--RTKWKAMREEESTHGTISKLAQDGT  299 (323)
Q Consensus       236 ~~i~~~-g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~--~~~~~~~~~~~~~i~~L~~ll~~~~  299 (323)
                       .+++- ..-..+...+.....+.+...-+..+..+....  .+.+..+  ...++..+.++..+.+
T Consensus       153 -~vvd~~s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~--~~~~l~~lW~~~~~~~  216 (234)
T PF12530_consen  153 -EVVDFYSAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEEL--KRQILQLLWEYTSSSD  216 (234)
T ss_pred             -hhccHHHHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHH--HHHHHHHHHhhccccc
Confidence             22221 122333333332222434443333333332222  1223333  3456667777665553

>smart00288 VHS Domain present in VPS-27, Hrs and STAM

Probab=80.76  E-value=9.6  Score=29.58  Aligned_cols=74  Identities=12%  Similarity=0.096  Sum_probs=57.2

Q ss_pred             hhHHHHHHHHhc-CCchhHHHHHHHHHHHhcc-ChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhc
Q 020640           30 RDHFLSLLKKMS-ATLPDQTEAAKELRLLTKR-MPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLS  107 (323)
Q Consensus        30 ~~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~-~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls  107 (323)
                      .+++..|-+.|+ .++.++..|+..|-.+.+. ...+...+.+ ..+++.|..++...    ...+.++..++..+...+
T Consensus        36 k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s-~~fl~~L~~l~~~~----~~~~~Vk~kil~li~~W~  110 (133)
T smart00288       36 KDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVAS-KEFLNELVKLIKPK----YPLPLVKKRILELIQEWA  110 (133)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHh-HHHHHHHHHHHcCC----CCcHHHHHHHHHHHHHHH
Confidence            367788888885 7789999999999988876 3456677777 88999999998853    233459999999988775


Q ss_pred             c
Q 020640          108 I  108 (323)
Q Consensus       108 ~  108 (323)
                      .
T Consensus       111 ~  111 (133)
T smart00288      111 D  111 (133)
T ss_pred             H
Confidence            4

Unpublished observations. Domain of unknown function.

>KOG2933 consensus Uncharacterized conserved protein [Function unknown]

Probab=80.20  E-value=17  Score=32.45  Aligned_cols=140  Identities=19%  Similarity=0.198  Sum_probs=86.8

Q ss_pred             hHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccc
Q 020640           31 DHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIH  109 (323)
Q Consensus        31 ~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~  109 (323)
                      .++...++.|+ +++..++.++..|+.++...++.......  ..|-.+++-++      .....+...|+.++..+...
T Consensus        88 ~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~--~vii~vvkslK------NlRS~VsraA~~t~~difs~  159 (334)
T KOG2933|consen   88 AALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLH--EVIIAVVKSLK------NLRSAVSRAACMTLADIFSS  159 (334)
T ss_pred             HHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHH--HHHHHHHHHhc------ChHHHHHHHHHHHHHHHHHH
Confidence            35556677774 66888999999999999876655444333  35666677676      44567888888888776543


Q ss_pred             cchhhhhhccCCcHHHHHHHHhc---CCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHH
Q 020640          110 DNNKKLVAETPMVIPLLMDALRS---GTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAI  186 (323)
Q Consensus       110 ~~~~~~i~~~~g~i~~Lv~ll~~---~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL  186 (323)
                      -++...- +..   ..+..++..   .+.-+++.|-.+|..+..+....      -+++.|...++..++.++..+..+.
T Consensus       160 ln~~i~~-~ld---~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~------~~L~~L~~~~~~~n~r~r~~a~~~~  229 (334)
T KOG2933|consen  160 LNNSIDQ-ELD---DLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ------KLLRKLIPILQHSNPRVRAKAALCF  229 (334)
T ss_pred             HHHHHHH-HHH---HHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH------HHHHHHHHHHhhhchhhhhhhhccc
Confidence            2221111 111   222333322   34567788888888886544322      2466777778887887777776654


Q ss_pred             HH
Q 020640          187 FN  188 (323)
Q Consensus       187 ~~  188 (323)
                      .+
T Consensus       230 ~~  231 (334)
T KOG2933|consen  230 SR  231 (334)
T ss_pred             cc
Confidence            43

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	323
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	3e-31
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	3e-12
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	7e-05
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	3e-04
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	1e-27
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	5e-23
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	4e-14
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	7e-27
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	8e-15
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	5e-06
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	3e-26
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	8e-22
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	1e-14
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	1e-12
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	5e-11
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	2e-06
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	2e-25
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	2e-22
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	1e-13
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	3e-11
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	3e-21
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	1e-18
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	3e-13
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	2e-10
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	3e-21
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	1e-11
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	3e-19
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	3e-18
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	2e-16
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	5e-13
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	2e-06
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	3e-17
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	3e-15
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	2e-07
3nmz_A	458	APC variant protein; protein-protein complex, arma	4e-17
3nmz_A	458	APC variant protein; protein-protein complex, arma	7e-17
3nmz_A	458	APC variant protein; protein-protein complex, arma	2e-15
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	6e-17
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	2e-08
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	5e-08
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	9e-17
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	5e-11
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	5e-10
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	2e-08
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	2e-14
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	8e-10
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	2e-07
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	2e-04
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	1e-13
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	4e-08
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	8e-07
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	8e-10
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	4e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-06

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  117 bits (294), Expect = 3e-31
 Identities = 35/230 (15%), Positives = 91/230 (39%), Gaps = 13/230 (5%)

Query: 47  QTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNL 106
           Q  A ++   +            ++  A+P L+  LS        N  + ++ +  L N+
Sbjct: 29  QLSATRKFSQILSDGNEQIQAVIDA-GALPALVQLLSSP------NEQILQEALWALSNI 81

Query: 107 SIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSAL-DSNKEVIGKSGALK 165
           +   N +         +P L+  L S   +    A  AL  +++  +   + +  +GAL 
Sbjct: 82  ASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALP 141

Query: 166 PLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRD-GGVSVILKKIMDG---VHVDEL 221
            L+ LL   ++  +++   A+ N+      + +AV D G +  +++ +      +  + L
Sbjct: 142 ALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEAL 201

Query: 222 LAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTIC 271
            A+  + S  +   + + + G +  + ++      ++ ++     L  + 
Sbjct: 202 WALSNIASGGNEQKQAVKEAGALEKLEQLQSHEN-EKIQKEAQEALEKLQ 250

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 64.2 bits (157), Expect = 3e-12
 Identities = 30/202 (14%), Positives = 80/202 (39%), Gaps = 17/202 (8%)

Query: 122 VIPLLMDALRSGTIETRSNAAAALFTLSALDS-NKEVIGKSGALKPLIDLLDEGHQSAMK 180
            +P +   L S  ++ + +A      + +  +   + +  +GAL  L+ LL   ++  ++
Sbjct: 13  ELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72

Query: 181 DVASAIFNLCITHENKARAVRDGGVSVILKKIMDGVHVDEL------LAILAMLSTNHRA 234
           +   A+ N+      + +AV D G    L +++   +   L      L+ +A        
Sbjct: 73  EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI- 131

Query: 235 VEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTIS-- 292
            + + D G +  +++++  S  ++  +  +  L  I      + +A+ +     G +   
Sbjct: 132 -QAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQIQAVID----AGALPAL 185

Query: 293 -KLAQDGTARAKRKATGILERL 313
            +L      +  ++A   L  +
Sbjct: 186 VQLLSSPNEQILQEALWALSNI 207

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 42.7 bits (101), Expect = 7e-05
 Identities = 19/167 (11%), Positives = 56/167 (33%), Gaps = 12/167 (7%)

Query: 151 LDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRD-GGVSVI- 208
           +  +         L  +   L+                +      + +AV D G +  + 
Sbjct: 1   MRGSHHHHHHGSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALV 60

Query: 209 --LKKIMDGVHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAI 266
             L    + +  + L A+  + S  +  ++ + D G +  +++++     ++  +  +  
Sbjct: 61  QLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPN-EQILQEALWA 119

Query: 267 LHTICLSDRTKWKAMREEESTHGTIS---KLAQDGTARAKRKATGIL 310
           L  I      + +A+ +     G +    +L      +  ++A   L
Sbjct: 120 LSNIASGGNEQIQAVID----AGALPALVQLLSSPNEQILQEALWAL 162

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 40.7 bits (96), Expect = 3e-04
 Identities = 24/137 (17%), Positives = 44/137 (32%), Gaps = 13/137 (9%)

Query: 14  PNSVQYINEEGITEADRDHFLSLLKKMSATLPDQTEAAKELRLLTKRMPSFRALFGESHD 73
              +Q + + G   A     + LL   S       EA   L  +            +   
Sbjct: 128 NEQIQAVIDAGALPA----LVQLLS--SPNEQILQEALWALSNIASGGNEQIQAVID-AG 180

Query: 74  AIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSG 133
           A+P L+  LS        N  + ++ +  L N++   N +K   +    +  L       
Sbjct: 181 ALPALVQLLSSP------NEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHE 234

Query: 134 TIETRSNAAAALFTLSA 150
             + +  A  AL  L +
Sbjct: 235 NEKIQKEAQEALEKLQS 251

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  112 bits (280), Expect = 1e-27
 Identities = 49/297 (16%), Positives = 105/297 (35%), Gaps = 13/297 (4%)

Query: 22  EEGITEADRDHFLSLLKKMSATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSP 81
            E + E  +             +    E ++ L+     + +++     +  AIP+L   
Sbjct: 99  PETLDEGMQIPSTQFDSAHPTNVQRLAEPSQMLKHAVVNLINYQDDAELATRAIPELTKL 158

Query: 82  LSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGT-IETRSN 140
           L++       +  +       +  LS  + ++  +  +P ++  ++  +++   +ET   
Sbjct: 159 LNDE------DQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARC 212

Query: 141 AAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAV 200
            +  L  LS        I KSG +  L+++L     S +    + + NL +  E    AV
Sbjct: 213 TSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAV 272

Query: 201 RD-GGVSVI---LKKIMDGVHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTC 256
           R  GG+  +   L K            +  +   N  +   I   GG   ++ I+R  T 
Sbjct: 273 RLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTY 332

Query: 257 DRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERL 313
           ++       +L  + +    K  A+ E       +     D + R  +     L  L
Sbjct: 333 EKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQ-ALGLHLTDPSQRLVQNCLWTLRNL 387

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 98.6 bits (245), Expect = 5e-23
 Identities = 45/289 (15%), Positives = 100/289 (34%), Gaps = 18/289 (6%)

Query: 32  HFLSLLKKMSATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGI 91
             +++L     ++     A   L  L       +         + ++++ L+++      
Sbjct: 238 ALVNMLGSPVDSV--LFHAITTLHNLLLHQEGAKMAVRL-AGGLQKMVALLNKT------ 288

Query: 92  NPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIET-RSNAAAALFTLSA 150
           N          L  L+  +   KL+         L++ +R+ T E      +  L  LS 
Sbjct: 289 NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 348

Query: 151 LDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILK 210
             SNK  I ++G ++ L   L +  Q  +++    + NL        +   +G +  +++
Sbjct: 349 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS--DAATKQEGMEGLLGTLVQ 406

Query: 211 KIMDG---VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRN-KENCIAI 266
            +      V       +  +   N++    +  +GG+  ++R +  +    +  E  I  
Sbjct: 407 LLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICA 466

Query: 267 LHTICLSDRTKWKAMREEESTHG--TISKLAQDGTARAKRKATGILERL 313
           L  +    +    A       +G   + KL    +     KAT  L R 
Sbjct: 467 LRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRN 515

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 72.0 bits (176), Expect = 4e-14
 Identities = 39/216 (18%), Positives = 70/216 (32%), Gaps = 23/216 (10%)

Query: 21  NEEGITEADRDHFLSLLKKM--SATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQL 78
            E         + L ++ K+    +     +A   L       P+  A   E   AIP+L
Sbjct: 477 AEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLRE-QGAIPRL 535

Query: 79  LSPLSES----------------KCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMV 122
           +  L  +                  E      + E     L  L+   +N+ ++      
Sbjct: 536 VQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRG-LNT 594

Query: 123 IPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDV 182
           IPL +  L S     +  AA  L  L+      E I   GA  PL +LL   ++      
Sbjct: 595 IPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYA 654

Query: 183 ASAIFNLCITHENKARAVRDGGVSVILKKIMDGVHV 218
           A+ +F +    E+K +  +      +   +     +
Sbjct: 655 AAVLFRMS---EDKPQDYKKRLSVELTSSLFRTEPM 687

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  104 bits (261), Expect = 7e-27
 Identities = 32/190 (16%), Positives = 76/190 (40%), Gaps = 13/190 (6%)

Query: 47  QTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNL 106
              A ++L  +            ++  A+P L+  LS        N  + ++ +  L N+
Sbjct: 29  LQSALRKLSQIASGGNEQIQAVIDA-GALPALVQLLSSP------NEQILQEALWALSNI 81

Query: 107 SIH-DNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSAL-DSNKEVIGKSGAL 164
           +   +   + V +    +P L+  L S   +    A  AL  +++  +   + +  +GAL
Sbjct: 82  ASGGNEQIQAVIDAG-ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGAL 140

Query: 165 KPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRD-GGVSVILK--KIMDGVHVDEL 221
             L+ LL   ++  +++   A+ N+      + +AV++ G +  + +     +     E 
Sbjct: 141 PALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEA 200

Query: 222 LAILAMLSTN 231
              L  L ++
Sbjct: 201 QEALEKLQSH 210

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 71.1 bits (175), Expect = 8e-15
 Identities = 35/200 (17%), Positives = 88/200 (44%), Gaps = 13/200 (6%)

Query: 122 VIPLLMDALRSGTIETRSNAAAALFTLSAL-DSNKEVIGKSGALKPLIDLLDEGHQSAMK 180
            +P ++  L S   +   +A   L  +++  +   + +  +GAL  L+ LL   ++  ++
Sbjct: 13  ELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72

Query: 181 DVASAIFNLCITHENKARAVRD-GGVSVI---LKKIMDGVHVDELLAILAMLSTNHRAVE 236
           +   A+ N+      + +AV D G +  +   L    + +  + L A+  + S  +  ++
Sbjct: 73  EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 132

Query: 237 EIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQ 296
            + D G +  +++++     ++  +  +  L  I      + +A++E     G + KL Q
Sbjct: 133 AVIDAGALPALVQLLSSPN-EQILQEALWALSNIASGGNEQKQAVKE----AGALEKLEQ 187

Query: 297 ---DGTARAKRKATGILERL 313
                  + +++A   LE+L
Sbjct: 188 LQSHENEKIQKEAQEALEKL 207

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 45.7 bits (109), Expect = 5e-06
 Identities = 21/170 (12%), Positives = 64/170 (37%), Gaps = 12/170 (7%)

Query: 151 LDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILK 210
           +  +         L  ++  L+   Q  ++     +  +      + +AV D G    L 
Sbjct: 1   MRGSHHHHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALV 60

Query: 211 KIM----DGVHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAI 266
           +++    + +  + L A+  + S  +  ++ + D G +  +++++  S  ++  +  +  
Sbjct: 61  QLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWA 119

Query: 267 LHTICLSDRTKWKAMREEESTHGTIS---KLAQDGTARAKRKATGILERL 313
           L  I      + +A+ +     G +    +L      +  ++A   L  +
Sbjct: 120 LSNIASGGNEQIQAVID----AGALPALVQLLSSPNEQILQEALWALSNI 165

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  107 bits (269), Expect = 3e-26
 Identities = 46/245 (18%), Positives = 89/245 (36%), Gaps = 13/245 (5%)

Query: 74  AIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSG 133
           AIP+L   L++       +  +       +  LS  + ++  +  +P ++  ++  +++ 
Sbjct: 18  AIPELTKLLNDE------DQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNT 71

Query: 134 T-IETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCIT 192
             +ET    A  L  LS        I KSG +  L+ +L     S +    + + NL + 
Sbjct: 72  NDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLH 131

Query: 193 HENKARAVRD-GGVSVI---LKKIMDGVHVDELLAILAMLSTNHRAVEEIGDLGGVSCML 248
            E    AVR  GG+  +   L K            +  +   N  +   I   GG   ++
Sbjct: 132 QEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALV 191

Query: 249 RIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATG 308
            I+R  T ++       +L  + +    K  A+ E       +     D + R  +    
Sbjct: 192 NIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGM-QALGLHLTDPSQRLVQNCLW 249

Query: 309 ILERL 313
            L  L
Sbjct: 250 TLRNL 254

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 94.8 bits (236), Expect = 8e-22
 Identities = 45/289 (15%), Positives = 99/289 (34%), Gaps = 18/289 (6%)

Query: 32  HFLSLLKKMSATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGI 91
             + +L     ++     A   L  L       +         + ++++ L+++      
Sbjct: 105 ALVKMLGSPVDSV--LFYAITTLHNLLLHQEGAKMAVRL-AGGLQKMVALLNKT------ 155

Query: 92  NPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIET-RSNAAAALFTLSA 150
           N          L  L+  +   KL+         L++ +R+ T E      +  L  LS 
Sbjct: 156 NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 215

Query: 151 LDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILK 210
             SNK  I ++G ++ L   L +  Q  +++    + NL        +   +G +  +++
Sbjct: 216 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS--DAATKQEGMEGLLGTLVQ 273

Query: 211 KIMDG---VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRN-KENCIAI 266
            +      V       +  +   N++    +  +GG+  ++R +  +    +  E  I  
Sbjct: 274 LLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICA 333

Query: 267 LHTICLSDRTKWKAMREEESTHG--TISKLAQDGTARAKRKATGILERL 313
           L  +    +    A       +G   + KL    +     KAT  L R 
Sbjct: 334 LRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRN 382

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 72.9 bits (179), Expect = 1e-14
 Identities = 31/204 (15%), Positives = 61/204 (29%), Gaps = 30/204 (14%)

Query: 31  DHFLSLLKKMSATLPDQTEAAKELRLLTKRMPSFR--ALFGESHDAIPQLLSPLSESKCE 88
           +  +  + +          A   LR LT R             H  +P ++  L      
Sbjct: 311 EALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLL-----H 365

Query: 89  NGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAA------ 142
              +  L +  +  + NL++   N   + E    IP L+  L     +T+   +      
Sbjct: 366 PPSHWPLIKATVGLIRNLALCPANHAPLREQG-AIPRLVQLLVRAHQDTQRRTSMGGTQQ 424

Query: 143 ----------------AALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAI 186
                            AL  L+    N+ VI     +   + LL    ++  +  A  +
Sbjct: 425 QFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVL 484

Query: 187 FNLCITHENKARAVRDGGVSVILK 210
             L    E       +G  + + +
Sbjct: 485 CELAQDKEAAEAIEAEGATAPLTE 508

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 67.5 bits (165), Expect = 1e-12
 Identities = 36/172 (20%), Positives = 58/172 (33%), Gaps = 20/172 (11%)

Query: 34  LSLLKKMSATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSES-------- 85
           + LL     +     +A   L       P+  A   E   AIP+L+  L  +        
Sbjct: 361 VKLLH--PPSHWPLIKATVGLIRNLALCPANHAPLRE-QGAIPRLVQLLVRAHQDTQRRT 417

Query: 86  --------KCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIET 137
                     E      + E     L  L+   +N+ ++      IPL +  L S     
Sbjct: 418 SMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLN-TIPLFVQLLYSPIENI 476

Query: 138 RSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNL 189
           +  AA  L  L+      E I   GA  PL +LL   ++      A+ +F +
Sbjct: 477 QRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 62.1 bits (151), Expect = 5e-11
 Identities = 31/170 (18%), Positives = 61/170 (35%), Gaps = 12/170 (7%)

Query: 151 LDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGG-VSVIL 209
           ++   +    + A+  L  LL++  Q  +   A  +  L     ++   +R    VS I+
Sbjct: 6   INYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIV 65

Query: 210 KKIMDGVHVDEL---LAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAI 266
           + + +   V+        L  LS +   +  I   GG+  +++++  S  D      I  
Sbjct: 66  RTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLG-SPVDSVLFYAITT 124

Query: 267 LHTICLSDRTKWKAMREEESTHGTIS---KLAQDGTARAKRKATGILERL 313
           LH + L       A+R      G +     L      +     T  L+ L
Sbjct: 125 LHNLLLHQEGAKMAVRLA----GGLQKMVALLNKTNVKFLAITTDCLQIL 170

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 48.2 bits (115), Expect = 2e-06
 Identities = 20/129 (15%), Positives = 35/129 (27%), Gaps = 9/129 (6%)

Query: 21  NEEGITEADRDHFLSLLKKMSATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLS 80
           +++               +              L +L  R    R +     + IP  + 
Sbjct: 410 HQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILA-RDVHNRIVIRG-LNTIPLFVQ 467

Query: 81  PLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSN 140
            L           N+Q      L  L+      + +         L + L S      + 
Sbjct: 468 LLYSP------IENIQRVAAGVLCELAQDKEAAEAIEAEG-ATAPLTELLHSRNEGVATY 520

Query: 141 AAAALFTLS 149
           AAA LF +S
Sbjct: 521 AAAVLFRMS 529

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  105 bits (264), Expect = 2e-25
 Identities = 46/245 (18%), Positives = 89/245 (36%), Gaps = 13/245 (5%)

Query: 74  AIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSG 133
           AIP+L   L++       +  +       +  LS  + ++  +  +P ++  ++  +++ 
Sbjct: 15  AIPELTKLLNDE------DQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNT 68

Query: 134 T-IETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCIT 192
             +ET    A  L  LS        I KSG +  L+ +L     S +    + + NL + 
Sbjct: 69  NDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLH 128

Query: 193 HENKARAVRD-GGVSVI---LKKIMDGVHVDELLAILAMLSTNHRAVEEIGDLGGVSCML 248
            E    AVR  GG+  +   L K            +  +   N  +   I   GG   ++
Sbjct: 129 QEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALV 188

Query: 249 RIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATG 308
            I+R  T ++       +L  + +    K  A+ E       +     D + R  +    
Sbjct: 189 NIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQ-ALGLHLTDPSQRLVQNCLW 246

Query: 309 ILERL 313
            L  L
Sbjct: 247 TLRNL 251

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 96.5 bits (240), Expect = 2e-22
 Identities = 43/284 (15%), Positives = 98/284 (34%), Gaps = 20/284 (7%)

Query: 32  HFLSLLKKMSATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGI 91
             + +L     ++     A   L  L       +         + ++++ L+++      
Sbjct: 102 ALVKMLGSPVDSV--LFYAITTLHNLLLHQEGAKMAVRL-AGGLQKMVALLNKT------ 152

Query: 92  NPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIET-RSNAAAALFTLSA 150
           N          L  L+  +   KL+         L++ +R+ T E      +  L  LS 
Sbjct: 153 NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 212

Query: 151 LDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILK 210
             SNK  I ++G ++ L   L +  Q  +++    + NL        +   +G +  +++
Sbjct: 213 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS--DAATKQEGMEGLLGTLVQ 270

Query: 211 KIMDG---VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRN-KENCIAI 266
            +      V       +  +   N++    +  +GG+  ++R +  +    +  E  I  
Sbjct: 271 LLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICA 330

Query: 267 LHTICLSDRTKWKAMREEESTHGTIS---KLAQDGTARAKRKAT 307
           L  +  S   + +  +     H  +    KL    +     KAT
Sbjct: 331 LRHLT-SRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKAT 373

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 70.7 bits (173), Expect = 1e-13
 Identities = 38/197 (19%), Positives = 65/197 (32%), Gaps = 23/197 (11%)

Query: 34  LSLLKKMSATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSES-------- 85
           + LL     +     +A   L       P+  A   E   AIP+L+  L  +        
Sbjct: 358 VKLLH--PPSHWPLIKATVGLIRNLALCPANHAPLRE-QGAIPRLVQLLVRAHQDTQRRT 414

Query: 86  --------KCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIET 137
                     E      + E     L  L+   +N+ ++      IPL +  L S     
Sbjct: 415 SMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLN-TIPLFVQLLYSPIENI 473

Query: 138 RSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKA 197
           +  AA  L  L+      E I   GA  PL +LL   ++      A+ +F +    E+K 
Sbjct: 474 QRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS---EDKP 530

Query: 198 RAVRDGGVSVILKKIMD 214
           +  +      +   +  
Sbjct: 531 QDYKKRLSVELTSSLFR 547

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 63.0 bits (153), Expect = 3e-11
 Identities = 29/170 (17%), Positives = 59/170 (34%), Gaps = 12/170 (7%)

Query: 151 LDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGG-VSVIL 209
           ++   +    + A+  L  LL++  Q  +   A  +  L     ++   +R    VS I+
Sbjct: 3   INYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIV 62

Query: 210 KKIMDGVHVDEL---LAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAI 266
           + + +   V+        L  LS +   +  I   GG+  +++++            I  
Sbjct: 63  RTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDS-VLFYAITT 121

Query: 267 LHTICLSDRTKWKAMREEESTHGTIS---KLAQDGTARAKRKATGILERL 313
           LH + L       A+R      G +     L      +     T  L+ L
Sbjct: 122 LHNLLLHQEGAKMAVRL----AGGLQKMVALLNKTNVKFLAITTDCLQIL 167

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 92.6 bits (230), Expect = 3e-21
 Identities = 44/305 (14%), Positives = 102/305 (33%), Gaps = 18/305 (5%)

Query: 14  PNSVQYINEEGITEADRDHFLSLLKKMSATLPDQTEAAKELRLLTKRMPSFRALFGESHD 73
               + + + G        F+ LL      +  Q +A   L  +       R    +  +
Sbjct: 97  SLQTRIVIQAGAVPI----FIELLSSEFEDV--QEQAVWALGNIAGDSTMCRDYVLD-CN 149

Query: 74  AIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSG 133
            +P LL   S+          +  + +  L NL    +     A+    + +L   L   
Sbjct: 150 ILPPLLQLFSKQN-----RLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVS 204

Query: 134 TIETRSNAAAALFTLSA-LDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCIT 192
             +  ++A  AL  LS   +   + +  +G  + L++LL       +     A+ N+   
Sbjct: 205 DTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTG 264

Query: 193 HENKARAVRDGGVSVILKKIM----DGVHVDELLAILAMLSTNHRAVEEIGDLGGVSCML 248
            + + + + +      L  ++    + +  +    I  + + N   ++ + D      ++
Sbjct: 265 DDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALI 324

Query: 249 RIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATG 308
            I++ +     KE   AI +        + K + E          L     ++  + A  
Sbjct: 325 SILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLL-TVMDSKIVQVALN 383

Query: 309 ILERL 313
            LE +
Sbjct: 384 GLENI 388

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 85.3 bits (211), Expect = 1e-18
 Identities = 38/274 (13%), Positives = 98/274 (35%), Gaps = 14/274 (5%)

Query: 47  QTEAAKELR-LLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLN 105
           Q  A ++ R LL+K           +   + + +  L   +     N  LQ +    L N
Sbjct: 37  QLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKE-----NCTLQFESAWVLTN 91

Query: 106 LSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSN-KEVIGKSGAL 164
           ++  ++ +  +      +P+ ++ L S   + +  A  AL  ++   +  ++ +     L
Sbjct: 92  IASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNIL 151

Query: 165 KPLIDLLDEGHQSAMK-DVASAIFNLCITHENKARAVRDGGVSVILKKIM----DGVHVD 219
            PL+ L  + ++  M  +   A+ NLC          +      +L  ++      V  D
Sbjct: 152 PPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLAD 211

Query: 220 ELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWK 279
              A+  +    +  ++ + D G    ++ ++      +     +  +  I   D  + +
Sbjct: 212 ACWALSYLSDGPNDKIQAVIDAGVCRRLVELLM-HNDYKVVSPALRAVGNIVTGDDIQTQ 270

Query: 280 AMREEESTHGTISKLAQDGTARAKRKATGILERL 313
            +    +   ++  L        K++A   +  +
Sbjct: 271 VILNCSALQ-SLLHLLSSPKESIKKEACWTISNI 303

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 68.8 bits (168), Expect = 3e-13
 Identities = 33/217 (15%), Positives = 73/217 (33%), Gaps = 13/217 (5%)

Query: 104 LNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSN---KEVIGK 160
           +       N   +A   ++   +++ + S + E + +A      L + + N    EVI  
Sbjct: 3   MGFHEAQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVIST 62

Query: 161 SGALKPLIDLLDEGHQSAMK-DVASAIFNLCITHENKARAVRDGGVSVILKKIMDGVHVD 219
            G +   ++ L       ++ + A  + N+   +  + R V   G   I  +++     D
Sbjct: 63  PGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFED 122

Query: 220 ------ELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLS 273
                   L  +A  ST  R  + + D   +  +L++  +        N +  L  +C  
Sbjct: 123 VQEQAVWALGNIAGDSTMCR--DYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRG 180

Query: 274 DRTKWKAMREEESTHGTISKLAQDGTARAKRKATGIL 310
                +  +     +  +S L           A   L
Sbjct: 181 KSPPPEFAKVSPCLN-VLSWLLFVSDTDVLADACWAL 216

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 60.7 bits (147), Expect = 2e-10
 Identities = 34/203 (16%), Positives = 80/203 (39%), Gaps = 16/203 (7%)

Query: 14  PNSVQYINEEGITEADRDHFLSLLKKMSATLPDQTEAAKELRLLTKRMPSFRALFGESHD 73
            + +Q + + G+        + LL      +   + A + +  +         +      
Sbjct: 224 NDKIQAVIDAGVCR----RLVELLMHNDYKV--VSPALRAVGNIVTGDDIQTQVILN-CS 276

Query: 74  AIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSG 133
           A+  LL  LS  K       +++++   T+ N++  +  +        + P L+  L++ 
Sbjct: 277 ALQSLLHLLSSPK------ESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTA 330

Query: 134 TIETRSNAAAALFTLSALDSNKEV--IGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCI 191
              TR  AA A+   ++  S +++  + + G +KPL DLL       ++   + + N+  
Sbjct: 331 EFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILR 390

Query: 192 THENKARAVRDGGVSVILKKIMD 214
             E +A+     G++     I +
Sbjct: 391 LGEQEAKR-NGTGINPYCALIEE 412

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 93.2 bits (231), Expect = 3e-21
 Identities = 39/308 (12%), Positives = 108/308 (35%), Gaps = 13/308 (4%)

Query: 12  ELPNSVQYINEEGITEADRDHFLSLLKKMSATLPD-QTEAAKELRLLTKRMPSFRALFGE 70
           +  +      ++      +     + +++++     Q  A  + R +  R          
Sbjct: 68  DEEDESSVSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVI 127

Query: 71  SHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDAL 130
               +P+L+  + E++        LQ +    L N++   + +  V      +PL +  L
Sbjct: 128 QAGVVPRLVEFMRENQ-----PEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLL 182

Query: 131 RSGTIETRSNAAAALFTLSA-LDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNL 189
            +G++E +  A  AL  ++      ++ + +  A++P++ L +    S ++     + NL
Sbjct: 183 YTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNL 242

Query: 190 CITHENKARAVRDGGVSVILKKIM----DGVHVDELLAILAMLSTNHRAVEEIGDLGGVS 245
           C   + +            L K++        VD   AI  +      A++ + D+    
Sbjct: 243 CRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPK 302

Query: 246 CMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRK 305
            ++ ++        +   +  +  I   +  + + +         +  L        K++
Sbjct: 303 RLVELLS-HESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLP-ALRLLLSSPKENIKKE 360

Query: 306 ATGILERL 313
           A   +  +
Sbjct: 361 ACWTISNI 368

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 64.3 bits (156), Expect = 1e-11
 Identities = 47/354 (13%), Positives = 101/354 (28%), Gaps = 62/354 (17%)

Query: 14  PNSVQYINEEGITEADRDHFLSLLKKMSATLPDQTEAAKELRLLTKRMPSFRALFGESHD 73
               + + +          F+ LL   S  +  + +A   L  +      +R    +  +
Sbjct: 163 SAQTKVVVDADAVP----LFIQLLYTGSVEV--KEQAIWALGNVAGDSTDYRDYVLQ-CN 215

Query: 74  AIPQLLSPLSESK--------------CENGINP----------------------NLQE 97
           A+  +L   + +K              C                                
Sbjct: 216 AMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLV 275

Query: 98  DVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSA-LDSNKE 156
           D    +  LS              +   L++ L   +   ++ A  A+  +    D   +
Sbjct: 276 DACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQ 335

Query: 157 VIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDGV 216
           V+  +G L  L  LL    ++  K+    I N+   +  + +AV D  +   L K+++  
Sbjct: 336 VVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVA 395

Query: 217 HVD------ELLAILAMLSTNHRA-VEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHT 269
                      ++  +         +  +   G +  +  ++ E   +R  E  +  L  
Sbjct: 396 EYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLL-EIADNRIIEVTLDALEN 454

Query: 270 ICLSDRTKWKAMR----------EEESTHGTISKLAQDGTARAKRKATGILERL 313
           I        +A            E+      I    Q+   +   KA  I+E  
Sbjct: 455 ILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETY 508

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 86.1 bits (213), Expect = 3e-19
 Identities = 43/239 (17%), Positives = 88/239 (36%), Gaps = 23/239 (9%)

Query: 14  PNSVQYINEEGITEADRDHFLSLLKKMSATLPDQTEAAKELRLLTKRMPSFRALFGESHD 73
            N     + +G   A     ++ LK  S  L  Q   A  LR L+ R             
Sbjct: 117 ANKATLCSMKGCMRA----LVAQLKSESEDL--QQVIASVLRNLSWRADVNSKKTLREVG 170

Query: 74  AIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIH--DNNKKLVAET---PMVIPLLMD 128
           ++  L+    E K       +  + V++ L NLS H  +N   + A       ++  L  
Sbjct: 171 SVKALMECALEVK-----KESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTY 225

Query: 129 ALRSGTIETRSNAAAALFTLSAL----DSNKEVIGKSGALKPLIDLLDEGHQSAMKDVAS 184
             ++ T+    +    L  +S+L    + +++++ ++  L+ L+  L     + + +   
Sbjct: 226 RSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACG 285

Query: 185 AIFNLCITH-ENKARAVRDGGVSVILKKIMDGVH--VDELLAILAMLSTNHRAVEEIGD 240
            ++NL   + +++      G VS++   I            A L  L  N  A  +  +
Sbjct: 286 TLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKYKDAN 344

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 83.0 bits (205), Expect = 3e-18
 Identities = 49/249 (19%), Positives = 94/249 (37%), Gaps = 22/249 (8%)

Query: 47  QTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNL 106
           +  A   L  LT    + +A        +  L++ L         + +LQ+ + + L NL
Sbjct: 101 RRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSE------SEDLQQVIASVLRNL 154

Query: 107 SIHDN--NKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSAL-DSNKEVIGK-SG 162
           S   +  +KK + E   V  L+  AL      T  +  +AL+ LSA    NK  I    G
Sbjct: 155 SWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDG 214

Query: 163 ALKPLIDLLDEGHQS----AMKDVASAIFNLC----ITHENKARAVRDGGVSVILKKIMD 214
           AL  L+  L    Q+     ++     + N+        +++     +  +  +L+ +  
Sbjct: 215 ALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKS 274

Query: 215 G---VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTIC 271
               +  +    +  + + N +  E + D+G VS +  +I  S          A L  + 
Sbjct: 275 HSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIH-SKHKMIAMGSAAALRNLM 333

Query: 272 LSDRTKWKA 280
            +   K+K 
Sbjct: 334 ANRPAKYKD 342

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 78.3 bits (193), Expect = 2e-16
 Identities = 42/271 (15%), Positives = 86/271 (31%), Gaps = 40/271 (14%)

Query: 72  HDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALR 131
              + Q  +P+           +     +  L+ LS  + ++  + E    +  + + L+
Sbjct: 31  EPGMDQDKNPMPAP------VEHQICPAVCVLMKLSFDEEHRHAMNELG-GLQAIAELLQ 83

Query: 132 SGT-----------IETRSNAAAALFTLSALDSN--KEVIGKSGALKPLIDLLDEGHQSA 178
                         I  R  A  AL  L+  D      +    G ++ L+  L    +  
Sbjct: 84  VDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDL 143

Query: 179 MKDVASAIFNLCITH--ENKARAVRDGGVSVILKKIMDGVHVDELLAILAMLST------ 230
            + +AS + NL       +K      G V  +++  ++      L ++L+ L        
Sbjct: 144 QQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCT 203

Query: 231 -NHRA-VEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTI---CLSDRTKWKAMREEE 285
            N        G L  +   L    ++      E+   IL  +     ++    + +RE  
Sbjct: 204 ENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRE-- 261

Query: 286 STHGTISKLAQ---DGTARAKRKATGILERL 313
             +  +  L Q     +      A G L  L
Sbjct: 262 --NNCLQTLLQHLKSHSLTIVSNACGTLWNL 290

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 67.9 bits (166), Expect = 5e-13
 Identities = 31/225 (13%), Positives = 70/225 (31%), Gaps = 21/225 (9%)

Query: 110 DNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLID 169
           +   +        +    + + +        A   L  LS  + ++  + + G L+ + +
Sbjct: 21  ETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAE 80

Query: 170 LLDEGHQSAMKD-----------VASAIFNLCI-THENKARAVRDGGVSVILKKIMDGVH 217
           LL    +                   A+ NL      NKA      G    L   +    
Sbjct: 81  LLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSES 140

Query: 218 VDELLAILAMLS-----TNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTIC- 271
            D    I ++L       +  + + + ++G V  ++    E   +   ++ ++ L  +  
Sbjct: 141 EDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSA 200

Query: 272 LSDRTKWKAMREEESTH---GTISKLAQDGTARAKRKATGILERL 313
                K      + +     GT++  +Q  T        GIL  +
Sbjct: 201 HCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNV 245

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 47.9 bits (114), Expect = 2e-06
 Identities = 17/91 (18%), Positives = 30/91 (32%), Gaps = 6/91 (6%)

Query: 71  SHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDAL 130
            ++ +  LL  L         +  +  +   TL NLS  +   +        + +L + +
Sbjct: 261 ENNCLQTLLQHLKSH------SLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLI 314

Query: 131 RSGTIETRSNAAAALFTLSALDSNKEVIGKS 161
            S        +AAAL  L A    K      
Sbjct: 315 HSKHKMIAMGSAAALRNLMANRPAKYKDANI 345

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 78.5 bits (193), Expect = 3e-17
 Identities = 32/223 (14%), Positives = 70/223 (31%), Gaps = 30/223 (13%)

Query: 75  IPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGT 134
           + + +S L          P+      T + +     +  +        I  L+  L+   
Sbjct: 10  LERAVSMLEADHML----PSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQN 65

Query: 135 IETRSNAAAALFTLSAL-DSNKEVIGKSGALKPLIDLLDEGHQSAMKD-VASAIFNLCIT 192
            + +     AL  L    + NK  + +   +  L+ +L +      K  +   ++NL   
Sbjct: 66  EDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSN 125

Query: 193 HENKARAVRDGGVSVILKKIMDGVHVDELLAILA------------------MLSTNHRA 234
            + K   + +  +++    I+      E     A                  M S     
Sbjct: 126 DKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADG 185

Query: 235 VEEIGDLGG-VSCMLRIIRESTCDRNK-----ENCIAILHTIC 271
            + +    G +  ++  +R +  D        ENC+ ILH + 
Sbjct: 186 RKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLS 228

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 73.1 bits (179), Expect = 3e-15
 Identities = 38/195 (19%), Positives = 69/195 (35%), Gaps = 25/195 (12%)

Query: 27  EADRDHFLSLLKKMSATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESK 86
           E   +  +S+L+         + AA  ++    +    R    +    I +LL  L    
Sbjct: 7   EMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLR-GILKLLQLLKVQ- 64

Query: 87  CENGINPNLQEDVITTLLNLSI-HDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAAL 145
                N ++Q  V   L NL    ++NK  VAE   V  LL    ++  +ET+      L
Sbjct: 65  -----NEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLL 119

Query: 146 FTLSALDSNKEVIGKSGALKPLIDLL----------------DEGHQSAMKDVASAIFNL 189
           + LS+ D  K ++  + AL  L + +                         +V   + N+
Sbjct: 120 WNLSSNDKLKNLMI-TEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNM 178

Query: 190 CITHENKARAVRDGG 204
                +  +A+R   
Sbjct: 179 SSAGADGRKAMRRCD 193

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 49.9 bits (119), Expect = 2e-07
 Identities = 30/207 (14%), Positives = 60/207 (28%), Gaps = 56/207 (27%)

Query: 121 MVIPLLMDALRSG--TIETRSNAAAALFTLSALDS-NKEVIGKSGALKPLIDLLDEGHQS 177
           M +   +  L +        S AA  +       S  ++ + +   +  L+ LL   ++ 
Sbjct: 8   MTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNED 67

Query: 178 AMKDVASAIFNLCITH-ENKARAVRDGGVSVILKKIMDGVHVDELLAILAMLSTNHRAVE 236
             + V  A+ NL     +NK                                        
Sbjct: 68  VQRAVCGALRNLVFEDNDNK---------------------------------------L 88

Query: 237 EIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMRE------------- 283
           E+ +L GV  +L++++++     K+    +L  +  +D+ K   + E             
Sbjct: 89  EVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITEALLTLTENIIIPF 148

Query: 284 EESTHGTISKLAQDGTARAKRKATGIL 310
                G   K             TG L
Sbjct: 149 SGWPEGDYPKANGLLDFDIFYNVTGCL 175

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 80.8 bits (199), Expect = 4e-17
 Identities = 37/207 (17%), Positives = 80/207 (38%), Gaps = 21/207 (10%)

Query: 14  PNSVQYINEEGITEADRDHFLSLLKKMSATLPDQTEAAKELRLLTKRMPSFRALFGESHD 73
            N     + +G   A     ++ LK  S  L  Q   A  LR L+ R             
Sbjct: 233 ANKATLCSMKGCMRA----LVAQLKSESEDL--QQVIASVLRNLSWRADVNSKKTLREVG 286

Query: 74  AIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIH--DNNKKLVAET---PMVIPLLMD 128
           ++  L+    E K       +  + V++ L NLS H  +N   + A       ++  L  
Sbjct: 287 SVKALMECALEVK-----KESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTY 341

Query: 129 ALRSGTIETRSNAAAALFTLSAL----DSNKEVIGKSGALKPLIDLLDEGHQSAMKDVAS 184
             ++ T+    +    L  +S+L    + +++++ ++  L+ L+  L     + + +   
Sbjct: 342 RSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACG 401

Query: 185 AIFNLCITH-ENKARAVRDGGVSVILK 210
            ++NL   + +++      G VS++  
Sbjct: 402 TLWNLSARNPKDQEALWDMGAVSMLKN 428

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 80.0 bits (197), Expect = 7e-17
 Identities = 35/183 (19%), Positives = 70/183 (38%), Gaps = 8/183 (4%)

Query: 21  NEEGITEADRDHFLSLLKKMSATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLS 80
           +++ + E      L                   L  L+      +A       A+  L+ 
Sbjct: 278 SKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVG 337

Query: 81  PLSESKCENGINPNLQEDVITTLLNLSIH----DNNKKLVAETPMVIPLLMDALRSGTIE 136
            L+     N     + E     L N+S      +++++++ E    +  L+  L+S ++ 
Sbjct: 338 TLTYRSQTN--TLAIIESGGGILRNVSSLIATNEDHRQILRENN-CLQTLLQHLKSHSLT 394

Query: 137 TRSNAAAALFTLSALDS-NKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHEN 195
             SNA   L+ LSA +  ++E +   GA+  L +L+   H+      A+A+ NL      
Sbjct: 395 IVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 454

Query: 196 KAR 198
           K +
Sbjct: 455 KYK 457

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 75.8 bits (186), Expect = 2e-15
 Identities = 46/339 (13%), Positives = 103/339 (30%), Gaps = 55/339 (16%)

Query: 26  TEADRDHFLSLLKKMSATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSES 85
                +   SLL  +     D+ + ++ L  ++    S  ++       +P L+  L  +
Sbjct: 27  LGTKVEMVYSLLSMLG--THDKDDMSRTLLAMSSSQDSCISMR--QSGCLPLLIQLLHGN 82

Query: 86  KCENGI------NPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLL------------- 126
             ++ +      +   +      L N+     + K       V+ LL             
Sbjct: 83  DKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEW 142

Query: 127 -----------MDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGH 175
                       + + +        A   L  LS  + ++  + + G L+ + +LL    
Sbjct: 143 QEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDC 202

Query: 176 QSAMKD-----------VASAIFNLCI-THENKARAVRDGGVSVILKKIMDGVHVDELLA 223
           +                   A+ NL      NKA      G    L   +     D    
Sbjct: 203 EMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQV 262

Query: 224 ILAMLS-----TNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTIC-LSDRTK 277
           I ++L       +  + + + ++G V  ++    E   +   ++ ++ L  +       K
Sbjct: 263 IASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENK 322

Query: 278 WKAMREEESTH---GTISKLAQDGTARAKRKATGILERL 313
                 + +     GT++  +Q  T        GIL  +
Sbjct: 323 ADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNV 361

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 80.4 bits (198), Expect = 6e-17
 Identities = 49/292 (16%), Positives = 100/292 (34%), Gaps = 22/292 (7%)

Query: 33  FLSLLKKMSATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGIN 92
           F+S L K +   P Q E+A  L  +            +   AIP  +S L+        +
Sbjct: 105 FVSFLGK-TDCSPIQFESAWALTNIASGTSEQTKAVVD-GGAIPAFISLLASP------H 156

Query: 93  PNLQEDVITTLLNLSIH-DNNKKLVAETPMVIPLLMDALRSGTIETRSNAAA--ALFTLS 149
            ++ E  +  L N++      + LV +    I  L+  L    + T +        +TLS
Sbjct: 157 AHISEQAVWALGNIAGDGSAFRDLVIKHG-AIDPLLALLAVPDLSTLACGYLRNLTWTLS 215

Query: 150 ALDSNK----EVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGV 205
            L  NK     +      L  L+ LL       + D   AI  L      +   V   GV
Sbjct: 216 NLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGV 275

Query: 206 SVILKKIMD----GVHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKE 261
              L K++      +    L AI  +++      +++ D G ++    ++  +     ++
Sbjct: 276 VPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQK 334

Query: 262 NCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERL 313
                +  I    + + + +         +  +      + +++A   +   
Sbjct: 335 EATWTMSNITAGRQDQIQQVVNHGLVPFLV-GVLSKADFKTQKEAAWAITNY 385

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 54.3 bits (130), Expect = 2e-08
 Identities = 30/229 (13%), Positives = 72/229 (31%), Gaps = 13/229 (5%)

Query: 96  QEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNK 155
             D+ T   + ++ D            +  ++  + S  +E++  A  A   L + +   
Sbjct: 33  SPDLGTDDDDKAMADIGSNQGTVN-WSVEDIVKGINSNNLESQLQATQAARKLLSREKQP 91

Query: 156 --EVIGKSGALKPLIDLLD-EGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKI 212
             + I ++G +   +  L          + A A+ N+      + +AV DGG       +
Sbjct: 92  PIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISL 151

Query: 213 MDGVHVDE----LLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNK----ENCI 264
           +   H       + A+  +        + +   G +  +L ++              N  
Sbjct: 152 LASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLT 211

Query: 265 AILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERL 313
             L  +C  ++     +   E    T+ +L           +   +  L
Sbjct: 212 WTLSNLC-RNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYL 259

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 53.1 bits (127), Expect = 5e-08
 Identities = 31/187 (16%), Positives = 74/187 (39%), Gaps = 15/187 (8%)

Query: 14  PNSVQYINEEGITEADRDHFLSLLKKMSATLPDQTEAAKELRLLTKRMPSFRALFGESHD 73
              ++ + ++G+        + LL   +  LP  T A + +  +            +   
Sbjct: 264 NERIEMVVKKGVVP----QLVKLLG--ATELPIVTPALRAIGNIVTGTDEQTQKVID-AG 316

Query: 74  AIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSG 133
           A+    S L+  K       N+Q++   T+ N++    ++        ++P L+  L   
Sbjct: 317 ALAVFPSLLTNPK------TNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA 370

Query: 134 TIETRSNAAAALFTLSALDSNKEV--IGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCI 191
             +T+  AA A+   ++  + +++  +   G ++PL++LL       ++ +  AI N+  
Sbjct: 371 DFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQ 430

Query: 192 THENKAR 198
             E    
Sbjct: 431 AAEKLGE 437

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 79.5 bits (195), Expect = 9e-17
 Identities = 37/265 (13%), Positives = 76/265 (28%), Gaps = 30/265 (11%)

Query: 47  QTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNL 106
           Q   A  ++    +  S +    +    I +L+  L         N N+Q+     L NL
Sbjct: 19  QAIGAYYIQHTCFQDESAKQQVYQLG-GICKLVDLLRSP------NQNVQQAAAGALRNL 71

Query: 107 SIHDN-NKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALK 165
                 NK        +   +    R+G  E +      L+ LS+ D  KE +  + AL 
Sbjct: 72  VFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELI-ADALP 130

Query: 166 PLIDLLDEGHQ----------------SAMKDVASAIFNLCITHENKARAVRDGG----- 204
            L D +                         +    + NL      +       G     
Sbjct: 131 VLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSL 190

Query: 205 VSVILKKIMDGVHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCI 264
           ++ +   +      D+ +     +  N     +         +    R +  +++   C 
Sbjct: 191 MAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCF 250

Query: 265 AILHTICLSDRTKWKAMREEESTHG 289
           +      +++        EE +  G
Sbjct: 251 SNKSDKMMNNNYDCPLPEEETNPKG 275

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 62.2 bits (150), Expect = 5e-11
 Identities = 33/184 (17%), Positives = 59/184 (32%), Gaps = 20/184 (10%)

Query: 121 MVIPLLMDALRSGTIETRSNAAAALFTLSALDS-NKEVIGKSGALKPLIDLLDEGHQSAM 179
           + IP  +  L S   + ++  A  +      D   K+ + + G +  L+DLL   +Q+  
Sbjct: 2   LTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQ 61

Query: 180 KDVASAIFNLCITH-ENKARAVRDGGVSVILKKIMDG------VHVDELLAILAMLSTNH 232
           +  A A+ NL      NK    R  G+   +  +           +  LL  L+      
Sbjct: 62  QAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELK 121

Query: 233 RAVEE-----------IGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAM 281
             +             I   G       + RE        N    L  +  +D  + + M
Sbjct: 122 EELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGR-QTM 180

Query: 282 REEE 285
           R   
Sbjct: 181 RNYS 184

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 59.1 bits (142), Expect = 5e-10
 Identities = 32/239 (13%), Positives = 67/239 (28%), Gaps = 27/239 (11%)

Query: 79  LSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETR 138
               + +     ++P +  +    L NLS  D  ++ +     +I  LM  +++    +R
Sbjct: 143 WCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASR 202

Query: 139 SNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKAR 198
            +  +    +  L +    +      +      +  +    K       N      N   
Sbjct: 203 CDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNY 262

Query: 199 AVRDGGVSVILKKIMDGVHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDR 258
                                     L    TN +    +     +   L ++ +S  D 
Sbjct: 263 -----------------------DCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDA 299

Query: 259 NKENCIAILHTICLSDRTKWKAMR----EEESTHGTISKLAQDGTARAKRKATGILERL 313
             E C   L  +  S       M      +E     I++L Q G +   R    +L  +
Sbjct: 300 TLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNM 358

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 54.5 bits (130), Expect = 2e-08
 Identities = 27/260 (10%), Positives = 70/260 (26%), Gaps = 23/260 (8%)

Query: 35  SLLKKMSATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESK-------- 86
           SL+  +   +       K +      + +             + L   + +         
Sbjct: 189 SLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTG 248

Query: 87  -CENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAAL 145
              N  +  +  +    L     +      +  +  +   L    +S    T    A AL
Sbjct: 249 CFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGAL 308

Query: 146 FTLSALDSNK------EVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARA 199
             L+A            +  K   L  +  LL  G+   ++  AS + N+          
Sbjct: 309 QNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVM 368

Query: 200 VRDGGVSVI--------LKKIMDGVHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRII 251
                  V              + +       +  ++++  +  ++      ++ ++ + 
Sbjct: 369 GNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLC 428

Query: 252 RESTCDRNKENCIAILHTIC 271
           R S   +  E    +L  + 
Sbjct: 429 RSSASPKAAEAARLLLSDMW 448

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 73.0 bits (178), Expect = 2e-14
 Identities = 45/330 (13%), Positives = 93/330 (28%), Gaps = 46/330 (13%)

Query: 22  EEGITEADRDHFLSLLKKMSATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSP 81
            +G      +     L K       +  AA  L  LT      +    E   +I  L+  
Sbjct: 371 GDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLD-AECKEKLIEDKASIHALMDL 429

Query: 82  LSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPM-------------------- 121
                     N +    V+TT +NL      ++++ E                       
Sbjct: 430 ARGG------NQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDF 483

Query: 122 ------------VIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLID 169
                       +   L    ++ +  ++   A  L  +  L   +  + + G +K L+ 
Sbjct: 484 INKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLR 543

Query: 170 LLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVI------LKKIMDGVHVDELLA 223
           +  EG +   +    A+  + IT   +        + VI      L++    +   E L 
Sbjct: 544 MALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLM 603

Query: 224 ILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMRE 283
            L  L++ + +V +          +                  L  + +S+    K    
Sbjct: 604 ALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVI-KMFEG 662

Query: 284 EESTHGTISKLAQDGTARAKRKATGILERL 313
                  ++ L +D          G L  +
Sbjct: 663 NNDRVKFLALLCEDEDEETATACAGALAII 692

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 59.1 bits (142), Expect = 8e-10
 Identities = 29/182 (15%), Positives = 61/182 (33%), Gaps = 9/182 (4%)

Query: 33  FLSLLKKMSATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGIN 92
            L  L +   T  +  E+   L  L     S R    +    + ++   L E       +
Sbjct: 584 PLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQG-VSKIEYYLMED------H 636

Query: 93  PNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALD 152
             L       L NL + ++  K+       +  L         ET +  A AL  ++++ 
Sbjct: 637 LYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVS 696

Query: 153 SN--KEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILK 210
               ++++  +  L  L  L+     +        I N+    E  A+ + +  +  +L 
Sbjct: 697 VKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLS 756

Query: 211 KI 212
            +
Sbjct: 757 GL 758

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 51.8 bits (123), Expect = 2e-07
 Identities = 45/347 (12%), Positives = 98/347 (28%), Gaps = 63/347 (18%)

Query: 22  EEGITEADRDHFLSLLKKMSATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSP 81
           +   T+   ++    L   +  +  +      +  L                 +  +L+ 
Sbjct: 241 KARFTDQIDEYIKDKLL--APDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAM 298

Query: 82  LSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNA 141
            +        +   Q      L+  S   +  K + E    + +L     S     R  A
Sbjct: 299 ATTD------DELQQRVACECLIAASSKKDKAKALCE--QGVDILKRLYHSKNDGIRVRA 350

Query: 142 AAALFTLSALDSN--KEVIGKSGALKPLIDLLDEGHQSAMKD------VASAIFNLCITH 193
              L  L +             GA   L +          KD       A  +  L +  
Sbjct: 351 LVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDA 410

Query: 194 ENKARAVRDGGVSVILKKIMDGVHVDELLAILAMLS------------------------ 229
           E K + + D      L  +  G +   L  ++                            
Sbjct: 411 ECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQ 470

Query: 230 ------------TNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTK 277
                         ++ +  + + G  + +  + + +    ++E    +L+ +C     +
Sbjct: 471 HIPEEHELDDVDFINKRITVLANEGITTALCALAK-TESHNSQELIARVLNAVCGLKELR 529

Query: 278 WKAMREEESTHGTIS---KLAQDGTARAKRKATGILERLKRTVNLTH 321
            K ++      G +    ++A +GT + KR AT  L R+  T+N   
Sbjct: 530 GKVVQ-----EGGVKALLRMALEGTEKGKRHATQALARIGITINPEV 571

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 41.8 bits (97), Expect = 2e-04
 Identities = 17/123 (13%), Positives = 35/123 (28%), Gaps = 6/123 (4%)

Query: 47  QTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNL 106
            T  A  L ++T                +  L + ++        +P +Q   I  +LN+
Sbjct: 682 ATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANP------SPAVQHRGIVIILNM 735

Query: 107 SIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKP 166
                          ++ LL    +            A   L+A +  + +     A  P
Sbjct: 736 INAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERYRIIERSDNAEIP 795

Query: 167 LID 169
            + 
Sbjct: 796 DVF 798

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 70.4 bits (171), Expect = 1e-13
 Identities = 37/260 (14%), Positives = 78/260 (30%), Gaps = 37/260 (14%)

Query: 74  AIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDN-NKKLVAETPMVIPLLMDALRS 132
            +P++++ L            ++ +    L +L   ++  K  V +    IP+L+  L  
Sbjct: 49  ELPEVIAMLGFR------LDAVKSNAAAYLQHLCYRNDKVKTDVRKLK-GIPVLVGLLDH 101

Query: 133 GTIETRSNAAAALFTLSALDS--NKEVIGKSGALKPLIDLLDEGH-QSAMKDVASAIFNL 189
              E    A  AL  +S      NK  I     +  L+ LL +       + +   ++NL
Sbjct: 102 PKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNL 161

Query: 190 CITHENKARAVRDGGVSVI-------------------LKKIMDGVHVDELLAILAMLST 230
                 K   V     ++                     + I     +      L  +S+
Sbjct: 162 SSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSS 221

Query: 231 NHRAV--EEIGDLGGVSCMLRIIRESTC-----DRNKENCIAILHTICLSDRTKWKAMRE 283
                  +     G V  ++ I++          +  ENC+ +L  +      +      
Sbjct: 222 ERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAER 281

Query: 284 EESTHGTISKLAQDGTARAK 303
            +     ++       AR  
Sbjct: 282 YQEAAPNVANNTGTSPARGY 301

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 53.4 bits (127), Expect = 4e-08
 Identities = 34/186 (18%), Positives = 64/186 (34%), Gaps = 18/186 (9%)

Query: 32  HFLSLLKKMSATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGI 91
           +    + +         EAA  +   T   P+         + +   +S L ESK     
Sbjct: 267 NLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESK----- 321

Query: 92  NPNLQEDVITTLLNLSIHDNNKKLVAETPMV----IPLLMDALRSGTIETRSNAAAALFT 147
            P + E     + NL            + +     +  + D L +        A+ AL  
Sbjct: 322 TPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRN 381

Query: 148 LSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKD--------VASAIFNLCITHENKARA 199
           L+    NKE+IGK  A+  L+  L  G Q++  +        + + I  +   +   A+ 
Sbjct: 382 LAVDARNKELIGK-HAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKK 440

Query: 200 VRDGGV 205
           +R+   
Sbjct: 441 LRETQG 446

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 49.6 bits (117), Expect = 8e-07
 Identities = 24/172 (13%), Positives = 59/172 (34%), Gaps = 9/172 (5%)

Query: 120 PMVIPLLMDALRSGTIETRSNAAAALFTLSAL--DSNKEVIGKSGALKPLIDLLDEGHQS 177
             +I   + + +        +   +L +L +L          +   L  +I +L     +
Sbjct: 4   EFMIGEEVPSDQYYWAPLAQHERGSLASLDSLRKGGPPPPNWRQPELPEVIAMLGFRLDA 63

Query: 178 AMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDGVHVDEL------LAILAMLSTN 231
              + A+ + +LC  ++     VR      +L  ++D    +        L  ++    +
Sbjct: 64  VKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNIS-FGRD 122

Query: 232 HRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMRE 283
                 I +  GV  ++R++R++      E     L  +   D  K + +  
Sbjct: 123 QDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDH 174

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 57.7 bits (139), Expect = 8e-10
 Identities = 41/239 (17%), Positives = 86/239 (35%), Gaps = 15/239 (6%)

Query: 61  MPSFRALFGESHDA--------IPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNN 112
           +P    + G+  +         +     P +  + E   +   +E  +  L +L  + +N
Sbjct: 14  VPRGSHMRGQRGEVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDN 73

Query: 113 KKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDS-NKEVIGKSGALKPLIDLL 171
                +   +  L+   L +G    R  AA  + T S   +  +E +   GAL+ L+ LL
Sbjct: 74  AADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLL 133

Query: 172 D-EGHQSAMKDVASAIFNLCITHENKARAVRD-GGVSVI---LKKIMDGVHVDELLAILA 226
           D +   +       AI  L    E          G SV+   +++ +  + V     +  
Sbjct: 134 DRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQN 193

Query: 227 MLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEE 285
           +L  +      +  +G V  ++ ++R        E+ +  L ++        +  RE E
Sbjct: 194 LLVGHPEHKGTLCSMGMVQQLVALVRTEHSP-FHEHVLGALCSLVTDFPQGVRECREPE 251

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 52.7 bits (126), Expect = 4e-08
 Identities = 31/218 (14%), Positives = 67/218 (30%), Gaps = 19/218 (8%)

Query: 34  LSLLKKMSATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINP 93
            +   + +A   ++  A + L  L + M +           +  L+    E+        
Sbjct: 44  TAGEAEQAADQQEREGALELLADLCENMDNAADF--CQLSGMHLLVGRYLEAG-----AA 96

Query: 94  NLQEDVITTLLNL-SIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSAL- 151
            L+      +          ++ V     +  LL    R      R  A   LF +S L 
Sbjct: 97  GLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKA---LFAISCLV 153

Query: 152 ---DSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRD-GGVSV 207
              ++      +      L+  + +  Q      A  + NL + H      +   G V  
Sbjct: 154 REQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQ 213

Query: 208 ILKKIMDG---VHVDELLAILAMLSTNHRAVEEIGDLG 242
           ++  +       H   L A+ ++++   + V E  +  
Sbjct: 214 LVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPE 251

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.5 bits (112), Expect = 4e-06
 Identities = 58/312 (18%), Positives = 98/312 (31%), Gaps = 85/312 (27%)

Query: 5   WCRSQGIELPNSVQYINEEGITEADRDH-FLSLLKKMSATLPDQ----TEAAKELR---- 55
           +  S           +    I + DR +    +  K + +         +A  ELR    
Sbjct: 93  FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKN 152

Query: 56  LLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGI------NPNLQEDVITTLLNLSIH 109
           +L   +       G++  A+   LS   + K +  I      N N  E V+  L  L   
Sbjct: 153 VLIDGVLGS----GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ 208

Query: 110 -DNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLI 168
            D N    ++    I L + +++           A L  L      +        L  L+
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQ-----------AELRRLLKSKPYEN------CL--LV 249

Query: 169 DLLDEGHQSAMKDVASA----IFNL-C---ITHENK--ARAVRDGGVSVI-LKKIMDGVH 217
             L         +V +A     FNL C   +T   K     +     + I L      + 
Sbjct: 250 --LL--------NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT 299

Query: 218 VDELLAILA-------------MLSTNHRAVEEIGDLGGVSCMLRIIRE--STCDR-NKE 261
            DE+ ++L              +L+TN R +  I +          IR+  +T D     
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAES---------IRDGLATWDNWKHV 350

Query: 262 NCIAILHTICLS 273
           NC  +   I  S
Sbjct: 351 NCDKLTTIIESS 362

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	323
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	100.0
3nmz_A	458	APC variant protein; protein-protein complex, arma	100.0
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	100.0
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	100.0
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	100.0
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	100.0
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	99.98
3nmz_A	458	APC variant protein; protein-protein complex, arma	99.97
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	99.97
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.97
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	99.97
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	99.97
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	99.97
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	99.97
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	99.96
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.96
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.96
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	99.96
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	99.96
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	99.96
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.95
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	99.95
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	99.95
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.95
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	99.95
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.95
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	99.95
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.94
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.93
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.93
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.93
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.93
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.92
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.92
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.91
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.9
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.88
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.86
3grl_A	651	General vesicular transport factor P115; vesicle t	99.75
3grl_A	651	General vesicular transport factor P115; vesicle t	99.61
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.41
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.38
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.32
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.32
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.31
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	99.3
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	99.29
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.26
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	99.16
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	99.14
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	99.11
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.09
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	99.07
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	99.07
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	98.98
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	98.86
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	98.83
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	98.82
1qgr_A	876	Protein (importin beta subunit); transport recepto	98.76
1qgr_A	876	Protein (importin beta subunit); transport recepto	98.76
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	98.71
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	98.67
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	98.61
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	98.48
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	98.47
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	98.42
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	98.41
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.37
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.32
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	98.32
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	98.27
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	98.26
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	98.17
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.14
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	98.03
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	98.02
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	98.02
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.0
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	97.96
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	97.94
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	97.81
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	97.77
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	97.65
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	97.63
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	97.58
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	97.19
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	97.09
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	96.56
2x1g_F	971	Cadmus; transport protein, developmental protein,	96.25
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	96.24
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	96.15
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	96.0
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	95.91
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	95.72
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	95.72
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	95.47
2x19_B	963	Importin-13; nuclear transport, protein transport;	95.38
3c2g_A	619	SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev	94.99
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	94.85
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	94.81
2x1g_F	971	Cadmus; transport protein, developmental protein,	94.56
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	94.48
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	94.47
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	94.33
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	94.04
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	93.83
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	93.63
2x19_B	963	Importin-13; nuclear transport, protein transport;	93.42
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	93.36
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	92.64
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	91.77
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	91.66
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	91.4
3c2g_A	619	SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev	90.86
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	90.6
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	89.99
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	89.79
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	88.55
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	88.07
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	87.76
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	86.82
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	85.94
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	85.47
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	84.33
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	82.62
3ldz_A	140	STAM-1, signal transducing adapter molecule 1; ubi	82.32
3a6p_A	1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	81.69

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=100.00  E-value=5.8e-35  Score=265.46  Aligned_cols=273  Identities=17%  Similarity=0.165  Sum_probs=236.1

Q ss_pred             chhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhccc-----ccCCCCCHHHHHHHHHHHHHhccccc-hhhhhh
Q 020640           44 LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSES-----KCENGINPNLQEDVITTLLNLSIHDN-NKKLVA  117 (323)
Q Consensus        44 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~-----~~~~~~~~~~~~~a~~~L~~ls~~~~-~~~~i~  117 (323)
                      .+.+..|+++|.|++. ++++|..+.+ .|+++.|+.+|...     ...++.++.++..|+++|.||+..++ ++..+.
T Consensus        46 ~~~~~~A~~aL~nls~-d~e~R~~i~~-~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~  123 (354)
T 3nmw_A           46 EHQICPAVCVLMKLSF-DEEHRHAMNE-LGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLC  123 (354)
T ss_dssp             GGTHHHHHHHHHHHHT-SHHHHHHHHH-TTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcC-CHHHHHHHHH-cCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            3456789999999996 5889999999 99999999999521     00002357899999999999998876 777776


Q ss_pred             ccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC--CCchhhhhccCChHHHHHHh-hhcCHhHHHHHHHHHHHhcc-CC
Q 020640          118 ETPMVIPLLMDALRSGTIETRSNAAAALFTLSAL--DSNKEVIGKSGALKPLIDLL-DEGHQSAMKDVASAIFNLCI-TH  193 (323)
Q Consensus       118 ~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~--~~~~~~i~~~g~i~~Lv~lL-~~~~~~~~~~al~aL~~L~~-~~  193 (323)
                      ..+|++|.|+.+|+++++++++.++++|+||+..  ++++..+++.|+++.|+++| ++++..+++.++++|+||+. .+
T Consensus       124 ~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~  203 (354)
T 3nmw_A          124 SMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCT  203 (354)
T ss_dssp             HCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCH
T ss_pred             HcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccCh
Confidence            6677899999999999999999999999999975  45789999999999999975 55788999999999999999 55


Q ss_pred             chhHHHH-hhCchHHHHHHhhcC------chHHHHHHHHHHHhc----CHHHHHHHHhcCCHHHHHHHHhccCChhHHHH
Q 020640          194 ENKARAV-RDGGVSVILKKIMDG------VHVDELLAILAMLST----NHRAVEEIGDLGGVSCMLRIIRESTCDRNKEN  262 (323)
Q Consensus       194 ~~~~~i~-~~g~v~~Lv~ll~~~------~~~~~a~~~L~~l~~----~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~  262 (323)
                      +++..++ ..|+++.|+++|.++      .+++.++++|+||+.    +++++..+++.|+++.|+++|++++ ..+++.
T Consensus       204 ~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~-~~v~~~  282 (354)
T 3nmw_A          204 ENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHS-LTIVSN  282 (354)
T ss_dssp             HHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSC-HHHHHH
T ss_pred             hhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCC-hHHHHH
Confidence            7888888 679999999999865      278999999999996    7999999999999999999999765 899999


Q ss_pred             HHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhcchhhc
Q 020640          263 CIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTVNLT  320 (323)
Q Consensus       263 a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~  320 (323)
                      |+++|++|+..+++.. ..+.+.|+++.|+++++++++++++.|+++|++|+...+..
T Consensus       283 A~~aL~nLa~~~~~~~-~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~~  339 (354)
T 3nmw_A          283 ACGTLWNLSARNPKDQ-EALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAK  339 (354)
T ss_dssp             HHHHHHHHTSSCHHHH-HHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCGG
T ss_pred             HHHHHHHHhCCCHHHH-HHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHHH
Confidence            9999999998776644 44557999999999999999999999999999999875543

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=100.00  E-value=7.2e-34  Score=265.70  Aligned_cols=268  Identities=18%  Similarity=0.174  Sum_probs=232.7

Q ss_pred             HHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhccc-----ccCCCCCHHHHHHHHHHHHHhccccc-hhhhhhccCC
Q 020640           48 TEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSES-----KCENGINPNLQEDVITTLLNLSIHDN-NKKLVAETPM  121 (323)
Q Consensus        48 ~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~-----~~~~~~~~~~~~~a~~~L~~ls~~~~-~~~~i~~~~g  121 (323)
                      .+|+++|.|++. ++++|..+.+ .|++++|+.+|...     ...++.++.++..|+++|.||+.+++ ++..+...+|
T Consensus       166 ~qAv~aL~nls~-~~e~R~~i~~-~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~G  243 (458)
T 3nmz_A          166 CPAVCVLMKLSF-DEEHRHAMNE-LGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKG  243 (458)
T ss_dssp             HHHHHHHHHHTT-SHHHHHHHHH-TTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHH
T ss_pred             HHHHHHHHHhcC-CHHHHHHHHH-CCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCC
Confidence            489999999985 6899999999 99999999999521     00002357899999999999998877 6666666667


Q ss_pred             cHHHHHHHHhcCCHHHHHHHHHHHHHhcCC--CCchhhhhccCChHHHHHHh-hhcCHhHHHHHHHHHHHhcc-CCchhH
Q 020640          122 VIPLLMDALRSGTIETRSNAAAALFTLSAL--DSNKEVIGKSGALKPLIDLL-DEGHQSAMKDVASAIFNLCI-THENKA  197 (323)
Q Consensus       122 ~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~--~~~~~~i~~~g~i~~Lv~lL-~~~~~~~~~~al~aL~~L~~-~~~~~~  197 (323)
                      ++|.|+.+|+++++++++.++++|+||+..  ++++..+++.|++++|+++| ++++..+++.++++|+||+. .++++.
T Consensus       244 aIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~  323 (458)
T 3nmz_A          244 CMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKA  323 (458)
T ss_dssp             HHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred             cHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHH
Confidence            899999999999999999999999999974  45789999999999999975 55788999999999999999 668888


Q ss_pred             HHH-hhCchHHHHHHhhcC--c----hHHHHHHHHHHHhc----CHHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHH
Q 020640          198 RAV-RDGGVSVILKKIMDG--V----HVDELLAILAMLST----NHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAI  266 (323)
Q Consensus       198 ~i~-~~g~v~~Lv~ll~~~--~----~~~~a~~~L~~l~~----~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~  266 (323)
                      .++ ..|+++.|+++|.++  .    +++.|+++|+||+.    +++++..+++.|+++.|+.+|++++ ..+++.|+++
T Consensus       324 ~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~-~~v~~~A~~a  402 (458)
T 3nmz_A          324 DICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHS-LTIVSNACGT  402 (458)
T ss_dssp             HHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSC-HHHHHHHHHH
T ss_pred             HHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCC-hHHHHHHHHH
Confidence            888 679999999999865  2    78999999999995    7899999999999999999999765 8999999999


Q ss_pred             HHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhcchhh
Q 020640          267 LHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTVNL  319 (323)
Q Consensus       267 L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~  319 (323)
                      |++|+..+++.. ..+.+.|+++.|+++++++++++++.|+++|++|+.+.+.
T Consensus       403 L~nLa~~~~~~~-~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p~  454 (458)
T 3nmz_A          403 LWNLSARNPKDQ-EALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA  454 (458)
T ss_dssp             HHHHHSSCHHHH-HHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCSC
T ss_pred             HHHHHcCCHHHH-HHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHh
Confidence            999998776654 4445789999999999999999999999999999987654

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=100.00  E-value=3.9e-33  Score=262.99  Aligned_cols=278  Identities=19%  Similarity=0.193  Sum_probs=240.4

Q ss_pred             HHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccc-
Q 020640           32 HFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIH-  109 (323)
Q Consensus        32 ~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~-  109 (323)
                      .+|.|+++|+ ++++.|..|+.+|.+++.+++..+..+.+ .|+||.|+++|+      ++++.++..|+.+|.||+.+ 
T Consensus         3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~-~g~i~~Lv~lL~------s~~~~~~~~A~~aL~nLa~~~   75 (457)
T 1xm9_A            3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQ-LGGICKLVDLLR------SPNQNVQQAAAGALRNLVFRS   75 (457)
T ss_dssp             CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHH-TTHHHHHHHHTT------SSCHHHHHHHHHHHHHHHSSC
T ss_pred             CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHH-cCCHHHHHHHHc------CCCHHHHHHHHHHHHHHhcCC
Confidence            6899999996 77899999999999999888878889999 999999999999      77899999999999999987 


Q ss_pred             cchhhhhhccCCcHHHHHHHHh-cCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhh--------hc------
Q 020640          110 DNNKKLVAETPMVIPLLMDALR-SGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLD--------EG------  174 (323)
Q Consensus       110 ~~~~~~i~~~~g~i~~Lv~ll~-~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~--------~~------  174 (323)
                      ++++..+++.| .++.|+.+|+ ++++++++.++++|+||+.+++++..+++ |+++.|+++|.        ++      
T Consensus        76 ~~~k~~i~~~G-~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e  153 (457)
T 1xm9_A           76 TTNKLETRRQN-GIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSRE  153 (457)
T ss_dssp             HHHHHHHHHTT-CHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------
T ss_pred             HHHHHHHHHcC-CHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcc
Confidence            66899999876 5999999999 88999999999999999998889999999 99999999993        22      


Q ss_pred             --CHhHHHHHHHHHHHhccCCchhHHHHhh-CchHHHHHHhhc--------CchHHHHHHHHHHHhcCH-----------
Q 020640          175 --HQSAMKDVASAIFNLCITHENKARAVRD-GGVSVILKKIMD--------GVHVDELLAILAMLSTNH-----------  232 (323)
Q Consensus       175 --~~~~~~~al~aL~~L~~~~~~~~~i~~~-g~v~~Lv~ll~~--------~~~~~~a~~~L~~l~~~~-----------  232 (323)
                        +..+...|+++|+|||.+++++..+.+. |+++.|+.+|.+        ...++.++.+|.|++...           
T Consensus       154 ~~~~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~  233 (457)
T 1xm9_A          154 VVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQL  233 (457)
T ss_dssp             CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHH
T ss_pred             cccHHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhc
Confidence              4567779999999999997888888887 999999999985        257889999999997421           


Q ss_pred             ----------------------------------------HHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHhcc
Q 020640          233 ----------------------------------------RAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICL  272 (323)
Q Consensus       233 ----------------------------------------~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~  272 (323)
                                                              ++.+.+++.|+++.|+.+|+.++++.+++.|+++|++|+.
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~  313 (457)
T 1xm9_A          234 EYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTA  313 (457)
T ss_dssp             HHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT
T ss_pred             ccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhcc
Confidence                                                    1223455667899999999877668999999999999998


Q ss_pred             cChH---hH-HHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhcchh
Q 020640          273 SDRT---KW-KAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTVN  318 (323)
Q Consensus       273 ~~~~---~~-~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~  318 (323)
                      .+..   .. +.++.+.|+++.|++++.++++++++.|+|+|++|+....
T Consensus       314 ~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~  363 (457)
T 1xm9_A          314 SKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPL  363 (457)
T ss_dssp             CSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGG
T ss_pred             CcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHH
Confidence            6532   12 4456678999999999999999999999999999997653

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=100.00  E-value=2.4e-32  Score=260.99  Aligned_cols=282  Identities=18%  Similarity=0.209  Sum_probs=239.9

Q ss_pred             hhhhHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHh
Q 020640           28 ADRDHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNL  106 (323)
Q Consensus        28 ~~~~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~l  106 (323)
                      ...+.++.||++|. ++...|.+|+.+|.+++..+++++..+.+ .|+||.|+++|+      ++++.+++.|+.+|.||
T Consensus        45 ~~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~-~G~Ip~LV~LL~------s~~~~vq~~Aa~AL~nL  117 (584)
T 3l6x_A           45 WRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRK-LKGIPVLVGLLD------HPKKEVHLGACGALKNI  117 (584)
T ss_dssp             CCCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTHHHHHHHGGG------CSSHHHHHHHHHHHHHH
T ss_pred             cccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHH-cCCcHHHHHHHC------CCCHHHHHHHHHHHHHH
Confidence            34578999999996 67889999999999999888999999999 999999999999      77999999999999999


Q ss_pred             ccc--cchhhhhhccCCcHHHHHHHHhc-CCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhh-----------
Q 020640          107 SIH--DNNKKLVAETPMVIPLLMDALRS-GTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLD-----------  172 (323)
Q Consensus       107 s~~--~~~~~~i~~~~g~i~~Lv~ll~~-~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~-----------  172 (323)
                      +.+  ++++..|.+.| .++.|+.+|++ .+.++++.++++|++|+.+++++..|++ ++++.|++++.           
T Consensus       118 a~~~~~~nk~~I~~~G-aIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~  195 (584)
T 3l6x_A          118 SFGRDQDNKIAIKNCD-GVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVD-HALHALTDEVIIPHSGWEREPN  195 (584)
T ss_dssp             TSSSCHHHHHHHHHTT-HHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHH-HTHHHHHHHTHHHHHCCC----
T ss_pred             HccCCHHHHHHHHHcC-CHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHh-ccHHHHHHHHhccccccccccc
Confidence            985  67999999975 69999999997 5789999999999999999999999996 57999999872           


Q ss_pred             -------hcCHhHHHHHHHHHHHhccCCc-hhHHHHhh-CchHHHHHHhhc------C--chHHHHHHHHHHHhcCHH--
Q 020640          173 -------EGHQSAMKDVASAIFNLCITHE-NKARAVRD-GGVSVILKKIMD------G--VHVDELLAILAMLSTNHR--  233 (323)
Q Consensus       173 -------~~~~~~~~~al~aL~~L~~~~~-~~~~i~~~-g~v~~Lv~ll~~------~--~~~~~a~~~L~~l~~~~~--  233 (323)
                             ..+..+++.|.++|+||+..++ +|..+++. |+++.|+.++++      .  ..++.|+++|+||+..-+  
T Consensus       196 ~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e  275 (584)
T 3l6x_A          196 EDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHRE  275 (584)
T ss_dssp             ------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHH
T ss_pred             ccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhcccccc
Confidence                   1246899999999999999885 48888886 667899999974      1  478999999999997621  


Q ss_pred             ------------------------HHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHhcccCh---HhHHHHHhhcc
Q 020640          234 ------------------------AVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDR---TKWKAMREEES  286 (323)
Q Consensus       234 ------------------------~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~---~~~~~~~~~~~  286 (323)
                                              +...+++.++++.|+.+++.+.++.++++|+++|++||....   ...+..+.+.+
T Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~  355 (584)
T 3l6x_A          276 IPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEK  355 (584)
T ss_dssp             STTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHH
T ss_pred             ccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcC
Confidence                                    112223445678889999866569999999999999987652   22345667789


Q ss_pred             cHHHHHHHhhcCCHHHHHHHHHHHHHHhcchh
Q 020640          287 THGTISKLAQDGTARAKRKATGILERLKRTVN  318 (323)
Q Consensus       287 ~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~  318 (323)
                      +++.|++++.++++.+++.|+++|+||+....
T Consensus       356 glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~  387 (584)
T 3l6x_A          356 ALSAIADLLTNEHERVVKAASGALRNLAVDAR  387 (584)
T ss_dssp             HHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCS
T ss_pred             cHHHHHHHHcCCCHHHHHHHHHHHHHHhCChh
Confidence            99999999999999999999999999997653

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=100.00  E-value=6.9e-31  Score=258.77  Aligned_cols=280  Identities=13%  Similarity=0.131  Sum_probs=243.7

Q ss_pred             hhhhHHHHHHHHhc-CCchhHHHHHHHHHHHhccCh-----------------------------hhH---HHHhhhcCC
Q 020640           28 ADRDHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMP-----------------------------SFR---ALFGESHDA   74 (323)
Q Consensus        28 ~~~~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~-----------------------------~~~---~~i~~~~g~   74 (323)
                      .+.|++|.||++++ +++.++..|+++|.|++.+.+                             ..+   +.+.+ .|+
T Consensus       418 ~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~Vve-aGa  496 (810)
T 3now_A          418 EDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLAN-EGI  496 (810)
T ss_dssp             HCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHH-TTH
T ss_pred             HccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHH-CcC
Confidence            45789999999996 678899999999999997542                             122   56788 999


Q ss_pred             HHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCc
Q 020640           75 IPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSN  154 (323)
Q Consensus        75 i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~  154 (323)
                      +|.|+.+|+      ++++.+++.|+++|.|++.++++|..+++.| +++.|+.+|+++++..++.|+++|.+|+.+.+.
T Consensus       497 Vp~LV~LL~------s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~G-aip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p  569 (810)
T 3now_A          497 TTALCALAK------TESHNSQELIARVLNAVCGLKELRGKVVQEG-GVKALLRMALEGTEKGKRHATQALARIGITINP  569 (810)
T ss_dssp             HHHHHHHHT------CCCHHHHHHHHHHHHHHHTSHHHHHHHHHTT-HHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCH
T ss_pred             HHHHHHHHc------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHCC-CHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCh
Confidence            999999999      7789999999999999998888999999865 799999999999999999999999999865544


Q ss_pred             hhhhh---ccCChHHHHHHhhhc-CHhHHHHHHHHHHHhccCC-chhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHH
Q 020640          155 KEVIG---KSGALKPLIDLLDEG-HQSAMKDVASAIFNLCITH-ENKARAVRDGGVSVILKKIMDG--VHVDELLAILAM  227 (323)
Q Consensus       155 ~~~i~---~~g~i~~Lv~lL~~~-~~~~~~~al~aL~~L~~~~-~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~  227 (323)
                      ...+.   ..|++++|+++|..+ +...+..|+++|.||+..+ +++..+++.|+++.|+.++.++  .+++.|+++|+|
T Consensus       570 ~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~N  649 (810)
T 3now_A          570 EVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCN  649 (810)
T ss_dssp             HHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHH
T ss_pred             hhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            33221   146999999999876 4445678999999999986 6788899999999999999876  689999999999


Q ss_pred             HhcCHHHHHHHHh-cCCHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHH
Q 020640          228 LSTNHRAVEEIGD-LGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKA  306 (323)
Q Consensus       228 l~~~~~~~~~i~~-~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A  306 (323)
                      |+.+++.+..+++ .|+++.|+.++...+ ..++..|+++|.+|+..++...+.++...|+++.|++++.+++.++++.|
T Consensus       650 La~~~~~~~~~v~~~g~l~~Lv~LL~s~d-~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A  728 (810)
T 3now_A          650 LVMSEDVIKMFEGNNDRVKFLALLCEDED-EETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRG  728 (810)
T ss_dssp             HTTSHHHHHHHHSSSSHHHHHHHGGGCSS-HHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHH
T ss_pred             HhCChHHHHHHHhccCcHHHHHHHhcCCC-HHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHH
Confidence            9999999999886 689999999999654 89999999999999997666667777558999999999999999999999


Q ss_pred             HHHHHHHhcc
Q 020640          307 TGILERLKRT  316 (323)
Q Consensus       307 ~~~L~~l~~~  316 (323)
                      .|+|.|+...
T Consensus       729 ~~aL~NL~~~  738 (810)
T 3now_A          729 IVIILNMINA  738 (810)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHHhC
Confidence            9999999864

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=100.00  E-value=6e-31  Score=248.03  Aligned_cols=285  Identities=18%  Similarity=0.187  Sum_probs=241.0

Q ss_pred             hhhhHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHh
Q 020640           28 ADRDHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNL  106 (323)
Q Consensus        28 ~~~~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~l  106 (323)
                      .+.|++|.|+++|+ +++..+..|+++|+|++.++++++..+.+ .|+||.|+++|+.     ++++++++.|+++|+||
T Consensus        41 ~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~-~G~i~~Lv~lL~~-----~~~~~~~~~a~~aL~nL  114 (457)
T 1xm9_A           41 YQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRR-QNGIREAVSLLRR-----TGNAEIQKQLTGLLWNL  114 (457)
T ss_dssp             HHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHH-TTCHHHHHHHHTT-----CCCHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHH-cCCHHHHHHHHhh-----CCCHHHHHHHHHHHHHH
Confidence            46799999999996 66889999999999999877999999999 9999999999983     44789999999999999


Q ss_pred             ccccchhhhhhccCCcHHHHHHHHh--------cC--------CHHHHHHHHHHHHHhcCCCCchhhhhcc-CChHHHHH
Q 020640          107 SIHDNNKKLVAETPMVIPLLMDALR--------SG--------TIETRSNAAAALFTLSALDSNKEVIGKS-GALKPLID  169 (323)
Q Consensus       107 s~~~~~~~~i~~~~g~i~~Lv~ll~--------~~--------~~~~~~~a~~~L~~L~~~~~~~~~i~~~-g~i~~Lv~  169 (323)
                      +.+++++..+++ | +++.|+.++.        ++        ++++...++++|+||+.+++++..+++. |+++.|+.
T Consensus       115 a~~~~~~~~i~~-g-~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~  192 (457)
T 1xm9_A          115 SSTDELKEELIA-D-ALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMA  192 (457)
T ss_dssp             HTSSSTHHHHHH-H-HHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHH
T ss_pred             hcCHHhHHHHHh-c-cHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHH
Confidence            999888998988 5 6999999993        22        4566679999999999888889999986 99999998


Q ss_pred             Hhhhc---------------------------------------------------------------------------
Q 020640          170 LLDEG---------------------------------------------------------------------------  174 (323)
Q Consensus       170 lL~~~---------------------------------------------------------------------------  174 (323)
                      +|.++                                                                           
T Consensus       193 lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (457)
T 1xm9_A          193 YVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETN  272 (457)
T ss_dssp             HHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSS
T ss_pred             HHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccC
Confidence            88641                                                                           


Q ss_pred             ------------------------CHhHHHHHHHHHHHhccCCchh-----HHHH-hhCchHHHHHHhhcC--chHHHHH
Q 020640          175 ------------------------HQSAMKDVASAIFNLCITHENK-----ARAV-RDGGVSVILKKIMDG--VHVDELL  222 (323)
Q Consensus       175 ------------------------~~~~~~~al~aL~~L~~~~~~~-----~~i~-~~g~v~~Lv~ll~~~--~~~~~a~  222 (323)
                                              ++.+++.|+++|+|||.++...     +.++ +.|+++.|+++|.++  .++..|+
T Consensus       273 ~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~  352 (457)
T 1xm9_A          273 PKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGA  352 (457)
T ss_dssp             CCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHH
T ss_pred             chHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHH
Confidence                                    2345566889999998865321     2344 579999999999987  6899999


Q ss_pred             HHHHHHhcCHHHHHHHHhcCCHHHHHHHHhccCC-----hhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhc
Q 020640          223 AILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTC-----DRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQD  297 (323)
Q Consensus       223 ~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~~~~-----~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~  297 (323)
                      ++|.|++.+++++..+. .|+++.|+++|..++.     +++...++.+|.++...+++ ....+.+.|+++.|++++.+
T Consensus       353 ~aL~nls~~~~~~~~i~-~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~-~~~~i~~~g~l~~L~~L~~~  430 (457)
T 1xm9_A          353 SLLSNMSRHPLLHRVMG-NQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQ-LAKQYFSSSMLNNIINLCRS  430 (457)
T ss_dssp             HHHHHHHTSGGGHHHHH-HHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTH-HHHHHCCHHHHHHHHHHHHC
T ss_pred             HHHHHHhcCHHHHHHHH-HhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHH-HHHHHHHcCCHHHHHHHHcC
Confidence            99999999988887665 4789999999996532     35788999999999987766 45556689999999999999


Q ss_pred             C-CHHHHHHHHHHHHHHhcchhhccC
Q 020640          298 G-TARAKRKATGILERLKRTVNLTHT  322 (323)
Q Consensus       298 ~-~~~~~~~A~~~L~~l~~~~~~~~~  322 (323)
                      + +++++++|.++|+++..+..++.+
T Consensus       431 ~~~~~i~~~A~~~L~~~~~~~~l~~~  456 (457)
T 1xm9_A          431 SASPKAAEAARLLLSDMWSSKELQGV  456 (457)
T ss_dssp             TTCHHHHHHHHHHHHTTSSSTTCSSC
T ss_pred             CCcHHHHHHHHHHHHHHHcchhhhcc
Confidence            9 999999999999999988877654

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=99.98  E-value=2.4e-30  Score=247.18  Aligned_cols=279  Identities=14%  Similarity=0.143  Sum_probs=244.0

Q ss_pred             hhhhHHHHHHHHhc--CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHH
Q 020640           28 ADRDHFLSLLKKMS--ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLN  105 (323)
Q Consensus        28 ~~~~~i~~Lv~~l~--~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~  105 (323)
                      -+.|+||.||++|+  +++.+|.+|+++|.|++.++++++..+++ .|+||.|+.+|+      ++++++++.|+++|.|
T Consensus        97 i~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~-~GaIp~Lv~lL~------s~~~~v~e~A~~aL~n  169 (510)
T 3ul1_B           97 IRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVD-GGAIPAFISLLA------SPHAHISEQAVWALGN  169 (510)
T ss_dssp             HHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHH-TTHHHHHHHHTT------CSCHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHH-CCCHHHHHHHHc------CCCHHHHHHHHHHHHH
Confidence            45699999999995  44789999999999999999999999999 999999999999      7899999999999999


Q ss_pred             hccccc-hhhhhhccCCcHHHHHHHHhcCC-----HHHHHHHHHHHHHhcCCCCchhhhhc-cCChHHHHHHhhhcCHhH
Q 020640          106 LSIHDN-NKKLVAETPMVIPLLMDALRSGT-----IETRSNAAAALFTLSALDSNKEVIGK-SGALKPLIDLLDEGHQSA  178 (323)
Q Consensus       106 ls~~~~-~~~~i~~~~g~i~~Lv~ll~~~~-----~~~~~~a~~~L~~L~~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~  178 (323)
                      ++.+.+ .|..+.+.| +++.|+.++.+.+     ...+..+++++.+++.+......+.. .|+++.|++++.++++.+
T Consensus       170 La~d~~~~r~~v~~~G-~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v  248 (510)
T 3ul1_B          170 IAGDGSAFRDLVIKHG-AIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEV  248 (510)
T ss_dssp             HHTTCHHHHHHHHHTT-CHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHH
T ss_pred             HHhCCHHHHHHHHHcC-ChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHH
Confidence            998765 577777765 6999999997653     46788999999999987766555544 789999999999999999


Q ss_pred             HHHHHHHHHHhccCCchhHH-HHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcC-HHHHHHHHhcCCHHHHHHHHhcc
Q 020640          179 MKDVASAIFNLCITHENKAR-AVRDGGVSVILKKIMDG--VHVDELLAILAMLSTN-HRAVEEIGDLGGVSCMLRIIRES  254 (323)
Q Consensus       179 ~~~al~aL~~L~~~~~~~~~-i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~-~~~~~~i~~~g~i~~Lv~ll~~~  254 (323)
                      +..++++|++|+.+++.+.. +++.|+++.|+.+|.++  .++..++++|.|++.. +..+..+++.|+++.|+.+++++
T Consensus       249 ~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~  328 (510)
T 3ul1_B          249 LADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP  328 (510)
T ss_dssp             HHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCS
T ss_pred             HHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCC
Confidence            99999999999998866554 56779999999999977  6789999999999884 67788899999999999999965


Q ss_pred             CChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhcc
Q 020640          255 TCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRT  316 (323)
Q Consensus       255 ~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~  316 (323)
                      + +.++..|+++|.+++..++... ..+.+.|+++.|+.++.+++..+++.|+++|.|++..
T Consensus       329 ~-~~v~~~A~~aL~nl~a~~~~~~-~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~  388 (510)
T 3ul1_B          329 K-TNIQKEATWTMSNITAGRQDQI-QQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSG  388 (510)
T ss_dssp             S-HHHHHHHHHHHHHHTTSCHHHH-HHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred             C-HHHHHHHHHHHHHHHcCcHHHH-HHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcc
Confidence            5 8999999999999999887654 5555789999999999999999999999999999864

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=99.97  E-value=7.4e-31  Score=245.34  Aligned_cols=284  Identities=16%  Similarity=0.181  Sum_probs=234.5

Q ss_pred             hhhhHHHHHHHHhcC-C------------chhHHHHHHHHHHHhccChhhHHHHhhhcCCH----------HHHHHhhcc
Q 020640           28 ADRDHFLSLLKKMSA-T------------LPDQTEAAKELRLLTKRMPSFRALFGESHDAI----------PQLLSPLSE   84 (323)
Q Consensus        28 ~~~~~i~~Lv~~l~~-~------------~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i----------~~Lv~lL~~   84 (323)
                      ...|++|.||++|+. +            ++.+.+|+++|.|++.++++......+ .|++          +.+++++..
T Consensus        67 ~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~  145 (458)
T 3nmz_A           67 RQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRRE-IRVLHLLEQIRAYCETCWEWQEA  145 (458)
T ss_dssp             HHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHH-HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHH-HHHHHHHHHhhhhhHHHHHHHHh
Confidence            567999999999962 2            588999999999999999887777777 7777          666777765


Q ss_pred             ccc-CC-CCCHHHHH-------HHHHHHHHhccccchhhhhhccCCcHHHHHHHHhc-----------CCHHHHHHHHHH
Q 020640           85 SKC-EN-GINPNLQE-------DVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRS-----------GTIETRSNAAAA  144 (323)
Q Consensus        85 ~~~-~~-~~~~~~~~-------~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~-----------~~~~~~~~a~~~  144 (323)
                      ... .+ +.++ +.+       .|+++|.|++.++++|..+.+.| +++.|+.+|..           .++.++..|+++
T Consensus       146 ~~~~~~~~~~~-~~~~~~~~~~qAv~aL~nls~~~e~R~~i~~~G-~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~a  223 (458)
T 3nmz_A          146 HEPGMDQDKNP-MPAPVEHQICPAVCVLMKLSFDEEHRHAMNELG-GLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMA  223 (458)
T ss_dssp             TSSSSCCCSCC---CCCTTTTHHHHHHHHHHTTSHHHHHHHHHTT-HHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred             hccccccccCC-ccchhhHHHHHHHHHHHHhcCCHHHHHHHHHCC-CHHHHHHHHhhhhcccccccCCCCHHHHHHHHHH
Confidence            421 00 0111 333       89999999999988999999975 69999999952           246789999999


Q ss_pred             HHHhcCCCC-chhhhhc-cCChHHHHHHhhhcCHhHHHHHHHHHHHhccC--CchhHHHHhhCchHHHHHHhh-cC--ch
Q 020640          145 LFTLSALDS-NKEVIGK-SGALKPLIDLLDEGHQSAMKDVASAIFNLCIT--HENKARAVRDGGVSVILKKIM-DG--VH  217 (323)
Q Consensus       145 L~~L~~~~~-~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~--~~~~~~i~~~g~v~~Lv~ll~-~~--~~  217 (323)
                      |.||+.+++ ++..+.. .|+++.|+++|++++++++..|+++|+||+..  ++++..+++.|+++.|+++|. ++  .+
T Consensus       224 L~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v  303 (458)
T 3nmz_A          224 LTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKEST  303 (458)
T ss_dssp             HHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHH
T ss_pred             HHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHH
Confidence            999998765 5656654 56699999999999999999999999999985  368888999999999999864 33  67


Q ss_pred             HHHHHHHHHHHhc-CHHHHHHHH-hcCCHHHHHHHHhccCCh---hHHHHHHHHHHHhcc---cChHhHHHHHhhcccHH
Q 020640          218 VDELLAILAMLST-NHRAVEEIG-DLGGVSCMLRIIRESTCD---RNKENCIAILHTICL---SDRTKWKAMREEESTHG  289 (323)
Q Consensus       218 ~~~a~~~L~~l~~-~~~~~~~i~-~~g~i~~Lv~ll~~~~~~---~~~~~a~~~L~~L~~---~~~~~~~~~~~~~~~i~  289 (323)
                      ++.++++|+||+. +++++..|+ ..|+++.|+++++.+++.   .+++.|+++|++|+.   .+++. +..+.+.|+++
T Consensus       304 ~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~-~~~i~~~G~i~  382 (458)
T 3nmz_A          304 LKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDH-RQILRENNCLQ  382 (458)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHH-HHHHHHTTHHH
T ss_pred             HHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHH-HHHHHHcccHH
Confidence            8999999999999 889999998 689999999999965422   489999999999997   56554 45556799999


Q ss_pred             HHHHHhhcCCHHHHHHHHHHHHHHhc
Q 020640          290 TISKLAQDGTARAKRKATGILERLKR  315 (323)
Q Consensus       290 ~L~~ll~~~~~~~~~~A~~~L~~l~~  315 (323)
                      .|++++.+++..+++.|+++|+||+.
T Consensus       383 ~Lv~LL~~~~~~v~~~A~~aL~nLa~  408 (458)
T 3nmz_A          383 TLLQHLKSHSLTIVSNACGTLWNLSA  408 (458)
T ss_dssp             HHHHHSSCSCHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHcCCChHHHHHHHHHHHHHHc
Confidence            99999999999999999999999994

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=99.97  E-value=1e-29  Score=243.99  Aligned_cols=279  Identities=14%  Similarity=0.138  Sum_probs=244.9

Q ss_pred             hhhhHHHHHHHHhc--CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHH
Q 020640           28 ADRDHFLSLLKKMS--ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLN  105 (323)
Q Consensus        28 ~~~~~i~~Lv~~l~--~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~  105 (323)
                      .+.|++|.||++|+  +++.++.+|+++|.|++.++++.+..+++ .|+||.|+.+|.      ++++.+++.|+++|.|
T Consensus       116 i~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~-~Gaip~Lv~LL~------s~~~~v~e~A~~aL~n  188 (529)
T 3tpo_A          116 IRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVD-GGAIPAFISLLA------SPHAHISEQAVWALGN  188 (529)
T ss_dssp             HHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHH-TTHHHHHHHHTT------CSCHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH-CCCHHHHHHHHc------CCCHHHHHHHHHHHHH
Confidence            45699999999995  44889999999999999988888899999 999999999999      7899999999999999


Q ss_pred             hccccc-hhhhhhccCCcHHHHHHHHhcC-----CHHHHHHHHHHHHHhcCCCCchhhhhc-cCChHHHHHHhhhcCHhH
Q 020640          106 LSIHDN-NKKLVAETPMVIPLLMDALRSG-----TIETRSNAAAALFTLSALDSNKEVIGK-SGALKPLIDLLDEGHQSA  178 (323)
Q Consensus       106 ls~~~~-~~~~i~~~~g~i~~Lv~ll~~~-----~~~~~~~a~~~L~~L~~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~  178 (323)
                      ++.+.+ +|..+.+.| +++.|+.++...     .......++++|.+++.+......+.. .|+++.|++++.++++.+
T Consensus       189 La~~~~~~r~~i~~~g-~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v  267 (529)
T 3tpo_A          189 IAGAGSAFRDLVIKHG-AIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEV  267 (529)
T ss_dssp             HHTTCHHHHHHHHHTT-CHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHH
T ss_pred             HhccCHHHHHHHHHcC-CcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHH
Confidence            998754 788888865 699999999765     346788999999999987765555444 789999999999999999


Q ss_pred             HHHHHHHHHHhccCCchhH-HHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcC-HHHHHHHHhcCCHHHHHHHHhcc
Q 020640          179 MKDVASAIFNLCITHENKA-RAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTN-HRAVEEIGDLGGVSCMLRIIRES  254 (323)
Q Consensus       179 ~~~al~aL~~L~~~~~~~~-~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~-~~~~~~i~~~g~i~~Lv~ll~~~  254 (323)
                      +..++++|.+++.+++.+. .+++.|+++.|+.+|.++  .++..++++|.|++.. +..+..+++.|+++.|+.+++++
T Consensus       268 ~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~  347 (529)
T 3tpo_A          268 LADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP  347 (529)
T ss_dssp             HHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCS
T ss_pred             HHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCC
Confidence            9999999999999886554 456789999999999977  6789999999999884 77888899999999999999965


Q ss_pred             CChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhcc
Q 020640          255 TCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRT  316 (323)
Q Consensus       255 ~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~  316 (323)
                      + +.++..|+++|.+++.+++... ..+.+.|+++.|+.++.+++..+++.|+|+|.|++..
T Consensus       348 ~-~~i~~~a~~aL~nl~~~~~~~~-~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~  407 (529)
T 3tpo_A          348 K-TNIQKEATWTMSNITAGRQDQI-QQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSG  407 (529)
T ss_dssp             S-HHHHHHHHHHHHHHHTSCHHHH-HHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred             C-HHHHHHHHHHHHHHhcccHHHH-HHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence            5 8999999999999999887644 4555789999999999999999999999999999864

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.97  E-value=1.2e-30  Score=236.94  Aligned_cols=244  Identities=21%  Similarity=0.226  Sum_probs=213.4

Q ss_pred             hhhhHHHHHHHHhcC------------CchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHH
Q 020640           28 ADRDHFLSLLKKMSA------------TLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNL   95 (323)
Q Consensus        28 ~~~~~i~~Lv~~l~~------------~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~   95 (323)
                      .+.|+++.|+.+|..            ++..|..|+++|.|++..++.++..+....|+||.|+++|+      ++++++
T Consensus        70 ~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~------s~~~~v  143 (354)
T 3nmw_A           70 NELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLK------SESEDL  143 (354)
T ss_dssp             HHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGG------CSCHHH
T ss_pred             HHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHC------CCCHHH
Confidence            567899999999941            25679999999999998877788888651456999999999      778999


Q ss_pred             HHHHHHHHHHhccc--cchhhhhhccCCcHHHHHHHH-hcCCHHHHHHHHHHHHHhcC-CCCchhhhh-ccCChHHHHHH
Q 020640           96 QEDVITTLLNLSIH--DNNKKLVAETPMVIPLLMDAL-RSGTIETRSNAAAALFTLSA-LDSNKEVIG-KSGALKPLIDL  170 (323)
Q Consensus        96 ~~~a~~~L~~ls~~--~~~~~~i~~~~g~i~~Lv~ll-~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~-~~g~i~~Lv~l  170 (323)
                      ++.|+.+|+||+..  ++++..+.+.| .++.|+.+| +++++++++.++++|+||+. .++++..++ ..|+++.|+++
T Consensus       144 ~~~A~~aL~nLs~~~~~~~k~~i~~~G-~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~l  222 (354)
T 3nmw_A          144 QQVIASVLRNLSWRADVNSKKTLREVG-SVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGT  222 (354)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHTT-HHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCCHHHHHHHHHCC-CHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHH
Confidence            99999999999985  34788888865 699999975 66789999999999999998 557888888 69999999999


Q ss_pred             hhhcCH----hHHHHHHHHHHHhcc----CCchhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhc-CHHHHHHHH
Q 020640          171 LDEGHQ----SAMKDVASAIFNLCI----THENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLST-NHRAVEEIG  239 (323)
Q Consensus       171 L~~~~~----~~~~~al~aL~~L~~----~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~-~~~~~~~i~  239 (323)
                      |.++++    .+++.|+++|+||+.    +++++..+.+.|+++.|+.+|+++  .+++.|+++|+|++. +++++..++
T Consensus       223 L~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~  302 (354)
T 3nmw_A          223 LTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALW  302 (354)
T ss_dssp             TTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred             hccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence            998654    489999999999996    667888899999999999999987  679999999999995 789999999


Q ss_pred             hcCCHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHH
Q 020640          240 DLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWK  279 (323)
Q Consensus       240 ~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~  279 (323)
                      +.|+++.|++++++++ +++++.|+++|.+|+.+.+..++
T Consensus       303 ~~G~i~~Lv~LL~s~~-~~i~~~A~~aL~nL~~~~~~~~~  341 (354)
T 3nmw_A          303 DMGAVSMLKNLIHSKH-KMIAMGSAAALRNLMANRPAKYK  341 (354)
T ss_dssp             HTTHHHHHHTTTTCSS-HHHHHHHHHHHHHHHTTCCGGGC
T ss_pred             HCCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHcCCHHHHh
Confidence            9999999999999765 89999999999999999876543

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=99.97  E-value=3.5e-29  Score=240.27  Aligned_cols=287  Identities=14%  Similarity=0.166  Sum_probs=246.0

Q ss_pred             hhhhHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHh
Q 020640           28 ADRDHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNL  106 (323)
Q Consensus        28 ~~~~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~l  106 (323)
                      .+.|++|.|+.++. .+..++..|+++|.+++.+++++|..+.+ .|++++|+.+|..... ......++..++++|.++
T Consensus       159 v~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~-~g~i~~Ll~lL~~~~~-~~~~~~~~~~a~~~L~nl  236 (529)
T 3tpo_A          159 VDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIK-HGAIDPLLALLAVPDL-STLACGYLRNLTWTLSNL  236 (529)
T ss_dssp             HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTCHHHHHHTTCSSCG-GGSCHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHH-cCCcHHHHHHHhccch-hHhHHHHHHHHHHHHHHH
Confidence            55689999999996 67899999999999999989999999999 9999999999984211 012346788999999999


Q ss_pred             ccccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCch-hhhhccCChHHHHHHhhhcCHhHHHHHHHH
Q 020640          107 SIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNK-EVIGKSGALKPLIDLLDEGHQSAMKDVASA  185 (323)
Q Consensus       107 s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~-~~i~~~g~i~~Lv~lL~~~~~~~~~~al~a  185 (323)
                      +.+.+....+....|+++.|+.++.+++++++..++++|.+++.+.+.+ ..+++.|+++.|+++|.+++..++..++++
T Consensus       237 ~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~a  316 (529)
T 3tpo_A          237 CRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA  316 (529)
T ss_dssp             HCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHH
T ss_pred             HhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHH
Confidence            9887765555444457999999999999999999999999999876554 455679999999999999999999999999


Q ss_pred             HHHhccCC-chhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcC-HHHHHHHHhcCCHHHHHHHHhccCChhHHH
Q 020640          186 IFNLCITH-ENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTN-HRAVEEIGDLGGVSCMLRIIRESTCDRNKE  261 (323)
Q Consensus       186 L~~L~~~~-~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~  261 (323)
                      |+|++.++ +.+..+++.|+++.|+.+|.++  .+++.|+++|.|++.+ ++.+..+++.|+++.|+.++.+++ .+++.
T Consensus       317 L~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~-~~v~~  395 (529)
T 3tpo_A          317 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKAD-FKTQK  395 (529)
T ss_dssp             HHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSC-HHHHH
T ss_pred             HHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCC-HHHHH
Confidence            99998876 4566778899999999999977  6899999999999984 778888999999999999999765 99999


Q ss_pred             HHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhcch
Q 020640          262 NCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTV  317 (323)
Q Consensus       262 ~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~  317 (323)
                      .|+++|.|++.+........+.+.|++++|++++.+.++++...+.++|.++.++.
T Consensus       396 ~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~  451 (529)
T 3tpo_A          396 AAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA  451 (529)
T ss_dssp             HHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence            99999999998643323344457899999999999999999999999999998654

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=99.97  E-value=8.9e-30  Score=243.30  Aligned_cols=283  Identities=17%  Similarity=0.187  Sum_probs=230.3

Q ss_pred             hhhhHHHHHHHHhc-CCchhHHHHHHHHHHHhcc-ChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHH
Q 020640           28 ADRDHFLSLLKKMS-ATLPDQTEAAKELRLLTKR-MPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLN  105 (323)
Q Consensus        28 ~~~~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~-~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~  105 (323)
                      .+.|+||.||++|+ ++..+|..|+++|.|++.. +++++..+.+ .|+|+.|+++|+.     ..+.++++.++.+|++
T Consensus        87 ~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~-~GaIp~LV~LL~s-----~~~~~~~e~aa~aL~n  160 (584)
T 3l6x_A           87 RKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKN-CDGVPALVRLLRK-----ARDMDLTEVITGTLWN  160 (584)
T ss_dssp             HHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHH-TTHHHHHHHHHHH-----CCSHHHHHHHHHHHHH
T ss_pred             HHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHH-cCCHHHHHHHHcC-----CCCHHHHHHHHHHHHH
Confidence            45689999999996 6789999999999999975 6899999999 9999999999994     2578999999999999


Q ss_pred             hccccchhhhhhccCCcHHHHHHHHh------------------cCCHHHHHHHHHHHHHhcCCCC-chhhhhc-cCChH
Q 020640          106 LSIHDNNKKLVAETPMVIPLLMDALR------------------SGTIETRSNAAAALFTLSALDS-NKEVIGK-SGALK  165 (323)
Q Consensus       106 ls~~~~~~~~i~~~~g~i~~Lv~ll~------------------~~~~~~~~~a~~~L~~L~~~~~-~~~~i~~-~g~i~  165 (323)
                      ||.+++++..|++ +| ++.|+.++.                  ..++++++.++++|+||+...+ ++..+++ .|+++
T Consensus       161 LS~~~~~k~~I~~-~a-lp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~  238 (584)
T 3l6x_A          161 LSSHDSIKMEIVD-HA-LHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVD  238 (584)
T ss_dssp             HTTSGGGHHHHHH-HT-HHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHH
T ss_pred             HhCCchhhHHHHh-cc-HHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHH
Confidence            9999889999996 54 999999872                  1257999999999999997664 4777777 45566


Q ss_pred             HHHHHhhh------------------------------------------------------------------------
Q 020640          166 PLIDLLDE------------------------------------------------------------------------  173 (323)
Q Consensus       166 ~Lv~lL~~------------------------------------------------------------------------  173 (323)
                      .|+.++++                                                                        
T Consensus       239 ~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~  318 (584)
T 3l6x_A          239 ALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLK  318 (584)
T ss_dssp             HHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHc
Confidence            77776653                                                                        


Q ss_pred             --cCHhHHHHHHHHHHHhccCCc-----hhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcCHHHHHHHHhcCCH
Q 020640          174 --GHQSAMKDVASAIFNLCITHE-----NKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGV  244 (323)
Q Consensus       174 --~~~~~~~~al~aL~~L~~~~~-----~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~~~~~~~i~~~g~i  244 (323)
                        .++.+++.|+++|+|||.+..     ++..+.+.|+++.|+++|.++  .+++.++++|.||+.++.++..| ..|++
T Consensus       319 ~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I-~~g~i  397 (584)
T 3l6x_A          319 ESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELI-GKHAI  397 (584)
T ss_dssp             HCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHH-HHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHH-HhCCH
Confidence              123445566666666665441     122223458899999999976  68999999999999998888766 67899


Q ss_pred             HHHHHHHhccC-------ChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcC--CHHHHHHHHHHHHHHhc
Q 020640          245 SCMLRIIREST-------CDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDG--TARAKRKATGILERLKR  315 (323)
Q Consensus       245 ~~Lv~ll~~~~-------~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~~~~~A~~~L~~l~~  315 (323)
                      +.||++|..++       ++.+...|+++|.||+..++...+ .+.+.|+++.|+.++.++  ++.+++.|+++|++|..
T Consensus       398 p~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~-~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~  476 (584)
T 3l6x_A          398 PNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAK-KLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWG  476 (584)
T ss_dssp             HHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHH-HHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHH-HHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHc
Confidence            99999998652       356788999999999988877554 445799999999999986  89999999999999998


Q ss_pred             chhhc
Q 020640          316 TVNLT  320 (323)
Q Consensus       316 ~~~~~  320 (323)
                      +..+.
T Consensus       477 ~~elr  481 (584)
T 3l6x_A          477 YKELR  481 (584)
T ss_dssp             SHHHH
T ss_pred             CHHHH
Confidence            77654

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=99.97  E-value=3.1e-29  Score=239.57  Aligned_cols=287  Identities=13%  Similarity=0.167  Sum_probs=245.3

Q ss_pred             hhhhHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHh
Q 020640           28 ADRDHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNL  106 (323)
Q Consensus        28 ~~~~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~l  106 (323)
                      .+.|++|.|+++|+ ++.+++..|+++|.|++.+++++|..+.+ .|++++|+.+|..... ......++..++++|.++
T Consensus       140 v~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~-~G~i~~Ll~lL~~~~~-~~~~~~~~~~a~~~L~nl  217 (510)
T 3ul1_B          140 VDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIK-HGAIDPLLALLAVPDL-STLACGYLRNLTWTLSNL  217 (510)
T ss_dssp             HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTCHHHHHHHTCSSCG-GGSCHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHH-cCChHHHHHHHHhccc-hhhhHHHHHHHHHHHHHH
Confidence            45689999999996 67899999999999999988999999999 9999999999984210 012345788999999999


Q ss_pred             ccccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCch-hhhhccCChHHHHHHhhhcCHhHHHHHHHH
Q 020640          107 SIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNK-EVIGKSGALKPLIDLLDEGHQSAMKDVASA  185 (323)
Q Consensus       107 s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~-~~i~~~g~i~~Lv~lL~~~~~~~~~~al~a  185 (323)
                      +.+......+....|+++.|+.++.+++++++..++++|.+|+.+.+++ ..+.+.|+++.|+++|.+++..++..++++
T Consensus       218 ~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~a  297 (510)
T 3ul1_B          218 CRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA  297 (510)
T ss_dssp             HCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHH
T ss_pred             hhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHH
Confidence            9887765555444457999999999999999999999999999876654 455679999999999999999999999999


Q ss_pred             HHHhccCCc-hhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcC-HHHHHHHHhcCCHHHHHHHHhccCChhHHH
Q 020640          186 IFNLCITHE-NKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTN-HRAVEEIGDLGGVSCMLRIIRESTCDRNKE  261 (323)
Q Consensus       186 L~~L~~~~~-~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~  261 (323)
                      |+|++..++ .+..+++.|+++.|+.+|+++  .+++.++++|.|++.+ ++.+..+.+.|+++.|+.++++++ .+++.
T Consensus       298 L~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~-~~v~~  376 (510)
T 3ul1_B          298 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKAD-FKTQK  376 (510)
T ss_dssp             HHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSC-HHHHH
T ss_pred             HHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCC-HHHHH
Confidence            999988774 566778899999999999877  6899999999999984 788888999999999999999765 99999


Q ss_pred             HHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhcch
Q 020640          262 NCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTV  317 (323)
Q Consensus       262 ~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~  317 (323)
                      .|+++|.|++..........+.+.|++++|++++.+.++++...+.++|.++.++.
T Consensus       377 ~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~  432 (510)
T 3ul1_B          377 EAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA  432 (510)
T ss_dssp             HHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence            99999999998643333344457899999999999999999999999999998754

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=99.97  E-value=1.8e-29  Score=248.77  Aligned_cols=284  Identities=17%  Similarity=0.125  Sum_probs=244.9

Q ss_pred             hhhhHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHh
Q 020640           28 ADRDHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNL  106 (323)
Q Consensus        28 ~~~~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~l  106 (323)
                      .+.|++|.|+.+++ +++.+|.+|+++|.|++. ++++|..+.+ .|++++|+.+|+      +.++..++.|+++|.++
T Consensus       492 veaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~-d~~~r~~Vv~-~Gaip~Lv~LL~------s~~~~~k~~Aa~AL~nL  563 (810)
T 3now_A          492 ANEGITTALCALAKTESHNSQELIARVLNAVCG-LKELRGKVVQ-EGGVKALLRMAL------EGTEKGKRHATQALARI  563 (810)
T ss_dssp             HHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHT-SHHHHHHHHH-TTHHHHHHHHHH------SSCHHHHHHHHHHHHHH
T ss_pred             HHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHH-CCCHHHHHHHHc------cCCHHHHHHHHHHHHHH
Confidence            35689999999996 668999999999999995 6779999999 999999999999      66789999999999999


Q ss_pred             ccccchhhhhhc--cCCcHHHHHHHHhcC-CHHHHHHHHHHHHHhcCCC-CchhhhhccCChHHHHHHhhhcCHhHHHHH
Q 020640          107 SIHDNNKKLVAE--TPMVIPLLMDALRSG-TIETRSNAAAALFTLSALD-SNKEVIGKSGALKPLIDLLDEGHQSAMKDV  182 (323)
Q Consensus       107 s~~~~~~~~i~~--~~g~i~~Lv~ll~~~-~~~~~~~a~~~L~~L~~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a  182 (323)
                      +...+....+..  ..|+++.|+.+|.++ +...+..|+++|.||+..+ +++..+++.|+++.|+.++.++++.++..|
T Consensus       564 ~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A  643 (810)
T 3now_A          564 GITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAA  643 (810)
T ss_dssp             HHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHH
T ss_pred             hcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHH
Confidence            876554332211  113699999999866 4455678999999999774 678889999999999999999999999999


Q ss_pred             HHHHHHhccCCchhHHHHh-hCchHHHHHHhhcC--chHHHHHHHHHHHhc-CHHHHHHHHh-cCCHHHHHHHHhccCCh
Q 020640          183 ASAIFNLCITHENKARAVR-DGGVSVILKKIMDG--VHVDELLAILAMLST-NHRAVEEIGD-LGGVSCMLRIIRESTCD  257 (323)
Q Consensus       183 l~aL~~L~~~~~~~~~i~~-~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~-~~~~~~~i~~-~g~i~~Lv~ll~~~~~~  257 (323)
                      +++|+||+.+++.+..+++ .|+++.|+.++.++  .+++.|+++|+|++. ++...+.+++ .|+++.|+.++++++ .
T Consensus       644 ~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d-~  722 (810)
T 3now_A          644 AQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPS-P  722 (810)
T ss_dssp             HHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSS-H
T ss_pred             HHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCC-H
Confidence            9999999999998888886 69999999999876  689999999999999 7888888988 899999999999765 9


Q ss_pred             hHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcC---CHHHHHHHHHHHHHHhcchhhcc
Q 020640          258 RNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDG---TARAKRKATGILERLKRTVNLTH  321 (323)
Q Consensus       258 ~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~---~~~~~~~A~~~L~~l~~~~~~~~  321 (323)
                      +++..|+++|.|++..+++. ...+.+.|++++|+++++..   +.++.+.|..+|.++.++..+..
T Consensus       723 ~vq~~A~~aL~NL~~~s~e~-~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~g~~~~  788 (810)
T 3now_A          723 AVQHRGIVIILNMINAGEEI-AKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERYRIIER  788 (810)
T ss_dssp             HHHHHHHHHHHHHHTTCHHH-HHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHHHTC--
T ss_pred             HHHHHHHHHHHHHHhCCHHH-HHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhCCCccC
Confidence            99999999999999877654 45556899999999998654   79999999999999998776543

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=99.96  E-value=1.2e-27  Score=229.26  Aligned_cols=280  Identities=15%  Similarity=0.172  Sum_probs=247.2

Q ss_pred             hhhhHHHHHHHHhc-CC-chhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHH
Q 020640           28 ADRDHFLSLLKKMS-AT-LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLN  105 (323)
Q Consensus        28 ~~~~~i~~Lv~~l~-~~-~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~  105 (323)
                      ...|.++.|+++|. ++ +.++..|+++|.+++..+++++..+.+ .|+++.|+.+|.      ++++.++..|+++|.+
T Consensus       114 ~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~-~g~i~~L~~lL~------~~~~~v~~~a~~aL~~  186 (528)
T 4b8j_A          114 IQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVID-HGAVPIFVKLLG------SSSDDVREQAVWALGN  186 (528)
T ss_dssp             HHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHH-TTHHHHHHHHTT------CSCHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHh-CCcHHHHHHHhc------CCCHHHHHHHHHHHHH
Confidence            44589999999996 44 889999999999999988999999999 999999999999      7789999999999999


Q ss_pred             hccccc-hhhhhhccCCcHHHHHHHH-hcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHH
Q 020640          106 LSIHDN-NKKLVAETPMVIPLLMDAL-RSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVA  183 (323)
Q Consensus       106 ls~~~~-~~~~i~~~~g~i~~Lv~ll-~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al  183 (323)
                      ++.+.+ ++..+... |+++.|+.++ .+.+..++..++++|.+|+...+........|+++.|++++.++++.++..++
T Consensus       187 l~~~~~~~~~~i~~~-g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~  265 (528)
T 4b8j_A          187 VAGDSPKCRDLVLAN-GALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDAC  265 (528)
T ss_dssp             HHHTCHHHHHHHHHT-TCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHH
T ss_pred             HhCCChhhHHHHHHC-CcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence            997755 67777776 4799999999 56789999999999999998765555555689999999999999999999999


Q ss_pred             HHHHHhccCCchh-HHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhc-CHHHHHHHHhcCCHHHHHHHHhccCChhH
Q 020640          184 SAIFNLCITHENK-ARAVRDGGVSVILKKIMDG--VHVDELLAILAMLST-NHRAVEEIGDLGGVSCMLRIIRESTCDRN  259 (323)
Q Consensus       184 ~aL~~L~~~~~~~-~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~  259 (323)
                      ++|.+|+...+.+ ..+++.|+++.|+.+|.++  .++..|+++|.+++. ++..+..+++.|+++.|+.++.++.++.+
T Consensus       266 ~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v  345 (528)
T 4b8j_A          266 WALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSI  345 (528)
T ss_dssp             HHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHH
Confidence            9999999887665 4567889999999999977  689999999999999 47788888999999999999997624899


Q ss_pred             HHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhcc
Q 020640          260 KENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRT  316 (323)
Q Consensus       260 ~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~  316 (323)
                      +..|+++|.+++..++.....++ +.++++.|++++.++++.++..|+++|.+++..
T Consensus       346 ~~~A~~~L~nl~~~~~~~~~~~~-~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~  401 (528)
T 4b8j_A          346 KKEACWTISNITAGNKDQIQAVI-NAGIIGPLVNLLQTAEFDIKKEAAWAISNATSG  401 (528)
T ss_dssp             HHHHHHHHHHHHTSCHHHHHHHH-HTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHH-HCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcC
Confidence            99999999999997766554554 679999999999999999999999999999875

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.96  E-value=1e-27  Score=207.21  Aligned_cols=240  Identities=20%  Similarity=0.291  Sum_probs=215.2

Q ss_pred             CCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccc-hhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC
Q 020640           73 DAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDN-NKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSAL  151 (323)
Q Consensus        73 g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~-~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~  151 (323)
                      |+++.|+++|+      +++++++..|+.+|.+++...+ ++..+.+.| +++.|+.++++++++++..++++|.+++..
T Consensus         2 ~~i~~L~~~L~------~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g-~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~   74 (252)
T 4hxt_A            2 NDVEKLVKLLT------STDSETQKEAARDLAEIASGPASAIKAIVDAG-GVEVLVKLLTSTDSEVQKEAARALANIASG   74 (252)
T ss_dssp             CHHHHHHHHTT------CSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTT-HHHHHHHHTTCSCHHHHHHHHHHHHHHTTS
T ss_pred             CcHHHHHHHHc------CCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCC-CHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence            57999999999      6679999999999999988776 788888865 799999999999999999999999999987


Q ss_pred             -CCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHHhcc-CCchhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHH
Q 020640          152 -DSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCI-THENKARAVRDGGVSVILKKIMDG--VHVDELLAILAM  227 (323)
Q Consensus       152 -~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~-~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~  227 (323)
                       ++++..+.+.|+++.|+++++++++.++..++++|.+|+. .++.+..+.+.|+++.|+++++++  .++..++++|.+
T Consensus        75 ~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~  154 (252)
T 4hxt_A           75 PDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALAN  154 (252)
T ss_dssp             CHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence             6788899999999999999999999999999999999995 457788888999999999999977  689999999999


Q ss_pred             Hhc-CHHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHH
Q 020640          228 LST-NHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKA  306 (323)
Q Consensus       228 l~~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A  306 (323)
                      ++. .+..+..+.+.|+++.|+.++.+++ +.++..|+++|.+++..+++.. ..+.+.|+++.|+++++++++.+++.|
T Consensus       155 l~~~~~~~~~~~~~~~~i~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~~-~~l~~~~~i~~L~~ll~~~~~~v~~~a  232 (252)
T 4hxt_A          155 IASGPDEAIKAIVDAGGVEVLVKLLTSTD-SEVQKEAARALANIASGPTSAI-KAIVDAGGVEVLQKLLTSTDSEVQKEA  232 (252)
T ss_dssp             HTTSCHHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHTTSBHHHH-HHHHHTTHHHHHHHGGGCSCHHHHHHH
T ss_pred             HHcCCHHHHHHHHHCcCHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCCHHHH-HHHHHCCCHHHHHHHHCCCcHHHHHHH
Confidence            999 4677788999999999999999654 8999999999999999877644 444578999999999999999999999


Q ss_pred             HHHHHHHhcchhhcc
Q 020640          307 TGILERLKRTVNLTH  321 (323)
Q Consensus       307 ~~~L~~l~~~~~~~~  321 (323)
                      .++|.+|+.+.+...
T Consensus       233 ~~~L~~l~~~~~~~~  247 (252)
T 4hxt_A          233 QRALENIKSGGWLEH  247 (252)
T ss_dssp             HHHHHHHHHTCBCCC
T ss_pred             HHHHHHHHcCCCccc
Confidence            999999998665443

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.96  E-value=2.1e-27  Score=205.16  Aligned_cols=237  Identities=21%  Similarity=0.287  Sum_probs=215.2

Q ss_pred             hHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccc
Q 020640           31 DHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIH  109 (323)
Q Consensus        31 ~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~  109 (323)
                      +.++.|++.|. ++++++..|+.+|.+++..+++++..+.+ .|+++.|+++|+      ++++.++..++.+|.+++.+
T Consensus         2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~g~i~~L~~ll~------~~~~~v~~~a~~~L~~l~~~   74 (252)
T 4hxt_A            2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVD-AGGVEVLVKLLT------STDSEVQKEAARALANIASG   74 (252)
T ss_dssp             CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHH-TTHHHHHHHHTT------CSCHHHHHHHHHHHHHHTTS
T ss_pred             CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHH-CCCHHHHHHHHh------CCCHHHHHHHHHHHHHHHcC
Confidence            57899999996 66889999999999999888889999999 999999999999      67899999999999999988


Q ss_pred             -cchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhc-CCCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHHH
Q 020640          110 -DNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLS-ALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIF  187 (323)
Q Consensus       110 -~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~-~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~  187 (323)
                       ++++..+.+.+ +++.|+.++++++++++..++++|.+|+ ..++++..+.+.|+++.|++++.++++.++..++++|+
T Consensus        75 ~~~~~~~~~~~~-~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~  153 (252)
T 4hxt_A           75 PDEAIKAIVDAG-GVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALA  153 (252)
T ss_dssp             CHHHHHHHHHTT-HHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHCC-CHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHH
Confidence             55788888865 6999999999999999999999999999 55677888899999999999999999999999999999


Q ss_pred             HhccCCc-hhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhc-CHHHHHHHHhcCCHHHHHHHHhccCChhHHHHH
Q 020640          188 NLCITHE-NKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLST-NHRAVEEIGDLGGVSCMLRIIRESTCDRNKENC  263 (323)
Q Consensus       188 ~L~~~~~-~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a  263 (323)
                      +|+..++ .+..+.+.|+++.|+.++.++  .++..++++|.+++. +++.+..+.+.|+++.|++++++++ +.+++.|
T Consensus       154 ~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~-~~v~~~a  232 (252)
T 4hxt_A          154 NIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTD-SEVQKEA  232 (252)
T ss_dssp             HHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSC-HHHHHHH
T ss_pred             HHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCc-HHHHHHH
Confidence            9999775 456778889999999999976  689999999999998 5788889999999999999999655 8999999


Q ss_pred             HHHHHHhcccChH
Q 020640          264 IAILHTICLSDRT  276 (323)
Q Consensus       264 ~~~L~~L~~~~~~  276 (323)
                      +++|.+|+...+.
T Consensus       233 ~~~L~~l~~~~~~  245 (252)
T 4hxt_A          233 QRALENIKSGGWL  245 (252)
T ss_dssp             HHHHHHHHHTCBC
T ss_pred             HHHHHHHHcCCCc
Confidence            9999999987754

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=99.96  E-value=2.1e-26  Score=220.68  Aligned_cols=280  Identities=15%  Similarity=0.148  Sum_probs=244.2

Q ss_pred             hhhHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhc
Q 020640           29 DRDHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLS  107 (323)
Q Consensus        29 ~~~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls  107 (323)
                      ..|+++.|+.+|. ++..++..|+++|.+++..++.++..+.+ .|+++.|+.+|..     +.++.++..++++|.+|+
T Consensus       158 ~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~-~g~l~~Ll~lL~~-----~~~~~v~~~a~~~L~~L~  231 (528)
T 4b8j_A          158 DHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLA-NGALLPLLAQLNE-----HTKLSMLRNATWTLSNFC  231 (528)
T ss_dssp             HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHH-TTCHHHHHHTCCT-----TCCHHHHHHHHHHHHHHH
T ss_pred             hCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHH-CCcHHHHHHHHhc-----CCCHHHHHHHHHHHHHHH
Confidence            3479999999996 67889999999999999888888999999 9999999999953     568999999999999999


Q ss_pred             cccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCch-hhhhccCChHHHHHHhhhcCHhHHHHHHHHH
Q 020640          108 IHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNK-EVIGKSGALKPLIDLLDEGHQSAMKDVASAI  186 (323)
Q Consensus       108 ~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~-~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL  186 (323)
                      ........... .|+++.|+.++.+++++++..++++|.+|+...+.+ ..+.+.|+++.|+.+|.++++.++..|+++|
T Consensus       232 ~~~~~~~~~~~-~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L  310 (528)
T 4b8j_A          232 RGKPQPSFEQT-RPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTV  310 (528)
T ss_dssp             CSSSCCCHHHH-TTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred             cCCCCCcHHHH-HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHH
Confidence            87654443444 357999999999999999999999999999776554 5667789999999999999999999999999


Q ss_pred             HHhccCCc-hhHHHHhhCchHHHHHHhhcC---chHHHHHHHHHHHhc-CHHHHHHHHhcCCHHHHHHHHhccCChhHHH
Q 020640          187 FNLCITHE-NKARAVRDGGVSVILKKIMDG---VHVDELLAILAMLST-NHRAVEEIGDLGGVSCMLRIIRESTCDRNKE  261 (323)
Q Consensus       187 ~~L~~~~~-~~~~i~~~g~v~~Lv~ll~~~---~~~~~a~~~L~~l~~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~  261 (323)
                      +||+.+++ ....+++.|+++.|+.+|.++   .++..|+++|.|++. .++....+++.|+++.|+.++.+++ +.++.
T Consensus       311 ~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~-~~v~~  389 (528)
T 4b8j_A          311 GNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAE-FDIKK  389 (528)
T ss_dssp             HHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSC-HHHHH
T ss_pred             HHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCC-HHHHH
Confidence            99998664 556678889999999999866   578999999999998 4677788899999999999999765 89999


Q ss_pred             HHHHHHHHhccc-ChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhcch
Q 020640          262 NCIAILHTICLS-DRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTV  317 (323)
Q Consensus       262 ~a~~~L~~L~~~-~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~  317 (323)
                      .|+++|.+++.. +++....+ .+.|+++.|+.++.++++.++..|.++|.+|....
T Consensus       390 ~a~~aL~nl~~~~~~~~~~~l-~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~  445 (528)
T 4b8j_A          390 EAAWAISNATSGGSHDQIKYL-VSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVG  445 (528)
T ss_dssp             HHHHHHHHHHHHSCHHHHHHH-HHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHH-HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence            999999999997 45544444 46899999999999999999999999999998754

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=99.96  E-value=1.3e-26  Score=222.33  Aligned_cols=279  Identities=14%  Similarity=0.093  Sum_probs=246.2

Q ss_pred             hhhhHHHHHHHHhc-C-CchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHH
Q 020640           28 ADRDHFLSLLKKMS-A-TLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLN  105 (323)
Q Consensus        28 ~~~~~i~~Lv~~l~-~-~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~  105 (323)
                      ...|.++.|+++|. + ++.++..|+++|.+++..+++.+..+.+ .|+++.|+.+|+      ++++.++..|+++|.+
T Consensus       127 ~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~-~g~i~~Lv~lL~------~~~~~vr~~A~~aL~~  199 (530)
T 1wa5_B          127 IQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVD-ADAVPLFIQLLY------TGSVEVKEQAIWALGN  199 (530)
T ss_dssp             HHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTCHHHHHHHHH------HCCHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHH-CCCHHHHHHHHc------CCCHHHHHHHHHHHHH
Confidence            34589999999996 3 6889999999999999888888889999 999999999999      6689999999999999


Q ss_pred             hccccc-hhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC-CchhhhhccCChHHHHHHhhhcCHhHHHHHH
Q 020640          106 LSIHDN-NKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALD-SNKEVIGKSGALKPLIDLLDEGHQSAMKDVA  183 (323)
Q Consensus       106 ls~~~~-~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al  183 (323)
                      ++.+.+ ++..+... |+++.|+.++.+.+..++..++++|.+|+.+. +........++++.|+.++.++++.++..++
T Consensus       200 l~~~~~~~~~~~~~~-~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~  278 (530)
T 1wa5_B          200 VAGDSTDYRDYVLQC-NAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDAC  278 (530)
T ss_dssp             HHTTCHHHHHHHHHT-TCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHH
T ss_pred             HhCCCccchHHHHHc-CcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHH
Confidence            998754 67777775 57999999999999999999999999999765 4555556689999999999999999999999


Q ss_pred             HHHHHhccCCc-hhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcC-HHHHHHHHhcCCHHHHHHHHhccCChhH
Q 020640          184 SAIFNLCITHE-NKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTN-HRAVEEIGDLGGVSCMLRIIRESTCDRN  259 (323)
Q Consensus       184 ~aL~~L~~~~~-~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~  259 (323)
                      ++|.+|+...+ ....+++.|+++.|+.+|.++  .++..|+++|.+++.. +.....+++.|+++.|+.++.+++ ..+
T Consensus       279 ~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~v  357 (530)
T 1wa5_B          279 WAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPK-ENI  357 (530)
T ss_dssp             HHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSC-HHH
T ss_pred             HHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCC-HHH
Confidence            99999998764 566677889999999999876  5789999999999985 677778889999999999999764 899


Q ss_pred             HHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhcc
Q 020640          260 KENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRT  316 (323)
Q Consensus       260 ~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~  316 (323)
                      +..|+++|.+++...+.....++ +.++++.|+.++.++++.++..|+++|.+++..
T Consensus       358 r~~A~~aL~~l~~~~~~~~~~~~-~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~  413 (530)
T 1wa5_B          358 KKEACWTISNITAGNTEQIQAVI-DANLIPPLVKLLEVAEYKTKKEACWAISNASSG  413 (530)
T ss_dssp             HHHHHHHHHHHTTSCHHHHHHHH-HTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHH-HCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Confidence            99999999999988776555555 689999999999999999999999999999864

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=99.96  E-value=5.3e-26  Score=212.83  Aligned_cols=280  Identities=14%  Similarity=0.103  Sum_probs=243.5

Q ss_pred             hhhHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhc
Q 020640           29 DRDHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLS  107 (323)
Q Consensus        29 ~~~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls  107 (323)
                      ..+.++.|+++++ +++.+|..|+.+|.+++..++.++..+.+ .|+++.|+++|..     +.++.++..++.+|.+++
T Consensus       105 ~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~~l~~-----~~~~~v~~~a~~~L~~l~  178 (450)
T 2jdq_A          105 QAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLD-CNILPPLLQLFSK-----QNRLTMTRNAVWALSNLC  178 (450)
T ss_dssp             HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTCHHHHHHHTTS-----CCCHHHHHHHHHHHHHHH
T ss_pred             hCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHH-CCCHHHHHHHhcC-----CCCHHHHHHHHHHHHHHh
Confidence            3589999999996 66889999999999999888888999999 9999999999983     357999999999999999


Q ss_pred             ccc-c-hhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC-CchhhhhccCChHHHHHHhhhcCHhHHHHHHH
Q 020640          108 IHD-N-NKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALD-SNKEVIGKSGALKPLIDLLDEGHQSAMKDVAS  184 (323)
Q Consensus       108 ~~~-~-~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~  184 (323)
                      ... . .+..+.  .++++.|+.+++++++.++..++++|.+|+... +....+...|+++.|++++.++++.++..+++
T Consensus       179 ~~~~~~~~~~~~--~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~  256 (450)
T 2jdq_A          179 RGKSPPPEFAKV--SPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALR  256 (450)
T ss_dssp             CCSSSCCCGGGT--GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHH
T ss_pred             CCCCCCCCHHHH--HHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHH
Confidence            765 2 333444  347999999999999999999999999999754 45667777899999999999999999999999


Q ss_pred             HHHHhccCCch-hHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhc-CHHHHHHHHhcCCHHHHHHHHhccCChhHH
Q 020640          185 AIFNLCITHEN-KARAVRDGGVSVILKKIMDG--VHVDELLAILAMLST-NHRAVEEIGDLGGVSCMLRIIRESTCDRNK  260 (323)
Q Consensus       185 aL~~L~~~~~~-~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~  260 (323)
                      +|.+++.+++. ...+++.|+++.|+.++.++  .++..++++|.+++. +++....+++.|+++.|+.++++++ +.++
T Consensus       257 ~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~-~~v~  335 (450)
T 2jdq_A          257 AVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAE-FRTR  335 (450)
T ss_dssp             HHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSC-HHHH
T ss_pred             HHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCC-HHHH
Confidence            99999998765 44567789999999999976  689999999999997 5778888899999999999999765 9999


Q ss_pred             HHHHHHHHHhccc-ChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhcchh
Q 020640          261 ENCIAILHTICLS-DRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTVN  318 (323)
Q Consensus       261 ~~a~~~L~~L~~~-~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~  318 (323)
                      ..|+++|.+++.. +++..+.++ +.++++.|++++.++++++++.|.++|.++....+
T Consensus       336 ~~a~~~L~~l~~~~~~~~~~~l~-~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~  393 (450)
T 2jdq_A          336 KEAAWAITNATSGGSAEQIKYLV-ELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGE  393 (450)
T ss_dssp             HHHHHHHHHHHHHCCHHHHHHHH-HHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHH-HCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhch
Confidence            9999999999986 455455555 67999999999999999999999999999987543

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.95  E-value=3.9e-27  Score=204.11  Aligned_cols=233  Identities=14%  Similarity=0.237  Sum_probs=209.2

Q ss_pred             hHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccc
Q 020640           31 DHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIH  109 (323)
Q Consensus        31 ~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~  109 (323)
                      ...+.++++|+ ++++++..|+.+|.++...+++++..+.+ .|+++.|+++|+      ++++.++..|+.+|.+++..
T Consensus        12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~-~g~i~~L~~lL~------~~~~~v~~~a~~~L~~l~~~   84 (252)
T 4db8_A           12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVID-AGALPALVQLLS------SPNEQILQEALWALSNIASG   84 (252)
T ss_dssp             CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHH-TTHHHHHHHGGG------CSCHHHHHHHHHHHHHHTTS
T ss_pred             chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHH-cCcHHHHHHHHc------CCCHHHHHHHHHHHHHHhcC
Confidence            46888999995 77899999999998766667778889999 999999999999      66799999999999999984


Q ss_pred             -cchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCch-hhhhccCChHHHHHHhhhcCHhHHHHHHHHHH
Q 020640          110 -DNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNK-EVIGKSGALKPLIDLLDEGHQSAMKDVASAIF  187 (323)
Q Consensus       110 -~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~-~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~  187 (323)
                       ++++..+.+.| .++.|+.++++++++++..++++|.+|+..++++ ..+.+.|+++.|+++|.+++..++..++++|+
T Consensus        85 ~~~~~~~i~~~g-~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~  163 (252)
T 4db8_A           85 GNEQIQAVIDAG-ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALS  163 (252)
T ss_dssp             CHHHHHHHHHTT-HHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHcC-CHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHH
Confidence             55788888865 6999999999999999999999999999988887 88888999999999999999999999999999


Q ss_pred             HhccCC-chhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhc-CHHHHHHHHhcCCHHHHHHHHhccCChhHHHHH
Q 020640          188 NLCITH-ENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLST-NHRAVEEIGDLGGVSCMLRIIRESTCDRNKENC  263 (323)
Q Consensus       188 ~L~~~~-~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a  263 (323)
                      +|+..+ +.+..+++.|+++.|+.+++++  .++..++++|.+++. +++.+..+.+.|+++.|+.++++++ +.+++.|
T Consensus       164 ~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~-~~v~~~A  242 (252)
T 4db8_A          164 NIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHEN-EKIQKEA  242 (252)
T ss_dssp             HHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSS-SHHHHTH
T ss_pred             HHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCC-HHHHHHH
Confidence            999876 4566678889999999999976  689999999999996 5788889999999999999999765 8999999


Q ss_pred             HHHHHHhcc
Q 020640          264 IAILHTICL  272 (323)
Q Consensus       264 ~~~L~~L~~  272 (323)
                      +++|.+|+.
T Consensus       243 ~~~L~~l~~  251 (252)
T 4db8_A          243 QEALEKLQS  251 (252)
T ss_dssp             HHHHHTTC-
T ss_pred             HHHHHHHhc
Confidence            999999985

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=99.95  E-value=5.2e-26  Score=218.11  Aligned_cols=279  Identities=13%  Similarity=0.125  Sum_probs=243.1

Q ss_pred             hhHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhcc
Q 020640           30 RDHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSI  108 (323)
Q Consensus        30 ~~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~  108 (323)
                      .|+++.|+++|. .++.++..|+++|.+++..++.++..+.. .|+++.|+.+|.      +.++.++..|+++|.+|+.
T Consensus       172 ~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~-~~~l~~L~~ll~------~~~~~v~~~a~~~L~~L~~  244 (530)
T 1wa5_B          172 ADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQ-CNAMEPILGLFN------SNKPSLIRTATWTLSNLCR  244 (530)
T ss_dssp             TTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTCHHHHHHGGG------SCCHHHHHHHHHHHHHHHC
T ss_pred             CCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHH-cCcHHHHHHHhc------cCCHHHHHHHHHHHHHHhC
Confidence            578999999996 67899999999999999888889999999 999999999999      6689999999999999997


Q ss_pred             cc-chhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC-CchhhhhccCChHHHHHHhhhcCHhHHHHHHHHH
Q 020640          109 HD-NNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALD-SNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAI  186 (323)
Q Consensus       109 ~~-~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL  186 (323)
                      .. ......... ++++.|+.++.++++.++..++++|.+|+... +....+.+.|+++.|+.+|.+++..++..|+++|
T Consensus       245 ~~~~~~~~~~~~-~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L  323 (530)
T 1wa5_B          245 GKKPQPDWSVVS-QALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAV  323 (530)
T ss_dssp             CSSSCCCHHHHG-GGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred             CCCCCCcHHHHH-hHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHH
Confidence            76 344444443 47999999999999999999999999999764 4466677789999999999999999999999999


Q ss_pred             HHhccCCc-hhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhc-CHHHHHHHHhcCCHHHHHHHHhccCChhHHHH
Q 020640          187 FNLCITHE-NKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLST-NHRAVEEIGDLGGVSCMLRIIRESTCDRNKEN  262 (323)
Q Consensus       187 ~~L~~~~~-~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~  262 (323)
                      .+++.+++ ....+++.|+++.|+.+|.++  .++..|+++|.+++. +++....+++.|+++.|+.++.+++ +.++..
T Consensus       324 ~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~v~~~  402 (530)
T 1wa5_B          324 GNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAE-YKTKKE  402 (530)
T ss_dssp             HHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSC-HHHHHH
T ss_pred             HHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCC-HHHHHH
Confidence            99998764 455567789999999999987  689999999999997 5777788889999999999999765 999999


Q ss_pred             HHHHHHHhcccC-h--HhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhcchh
Q 020640          263 CIAILHTICLSD-R--TKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTVN  318 (323)
Q Consensus       263 a~~~L~~L~~~~-~--~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~  318 (323)
                      |+++|.+++... +  .....++ +.|+++.|+.++.+.++.++..|.++|.++....+
T Consensus       403 a~~aL~~l~~~~~~~~~~~~~l~-~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~  460 (530)
T 1wa5_B          403 ACWAISNASSGGLQRPDIIRYLV-SQGCIKPLCDLLEIADNRIIEVTLDALENILKMGE  460 (530)
T ss_dssp             HHHHHHHHHHHTTTCTHHHHHHH-HTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCcHHHHHHHH-HCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhh
Confidence            999999999863 2  3444554 68999999999999999999999999999987543

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=99.95  E-value=1.2e-25  Score=210.49  Aligned_cols=275  Identities=15%  Similarity=0.150  Sum_probs=240.2

Q ss_pred             hHHHHHHHHhc-C-CchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhcc
Q 020640           31 DHFLSLLKKMS-A-TLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSI  108 (323)
Q Consensus        31 ~~i~~Lv~~l~-~-~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~  108 (323)
                      +.++.|++.++ + ++.+|..|+.+|.+++..+++++..+.+ .|+++.|+++|+      ++++.++..|+.+|.+++.
T Consensus        64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~lL~------~~~~~vr~~a~~~L~~l~~  136 (450)
T 2jdq_A           64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQ-AGAVPIFIELLS------SEFEDVQEQAVWALGNIAG  136 (450)
T ss_dssp             THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHH-TTHHHHHHHHTT------CSCHHHHHHHHHHHHHHHT
T ss_pred             CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHh-CCCHHHHHHHHc------CCCHHHHHHHHHHHHHHcc
Confidence            79999999996 4 6889999999999999877888888888 999999999999      7789999999999999998


Q ss_pred             ccc-hhhhhhccCCcHHHHHHHHhc-CCHHHHHHHHHHHHHhcCCC--CchhhhhccCChHHHHHHhhhcCHhHHHHHHH
Q 020640          109 HDN-NKKLVAETPMVIPLLMDALRS-GTIETRSNAAAALFTLSALD--SNKEVIGKSGALKPLIDLLDEGHQSAMKDVAS  184 (323)
Q Consensus       109 ~~~-~~~~i~~~~g~i~~Lv~ll~~-~~~~~~~~a~~~L~~L~~~~--~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~  184 (323)
                      +.. .+..+.+.+ +++.|+.++++ .+..++..++++|.+++...  ..+..++ .++++.|++++.++++.++..+++
T Consensus       137 ~~~~~~~~~~~~~-~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~  214 (450)
T 2jdq_A          137 DSTMCRDYVLDCN-ILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV-SPCLNVLSWLLFVSDTDVLADACW  214 (450)
T ss_dssp             TCHHHHHHHHHTT-CHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT-GGGHHHHHHHTTCCCHHHHHHHHH
T ss_pred             CCHHHHHHHHHCC-CHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH-HHHHHHHHHHHccCCHHHHHHHHH
Confidence            764 677777754 79999999996 68999999999999999654  3333333 789999999999999999999999


Q ss_pred             HHHHhccCC-chhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcC-HHHHHHHHhcCCHHHHHHHHhccCChhHH
Q 020640          185 AIFNLCITH-ENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTN-HRAVEEIGDLGGVSCMLRIIRESTCDRNK  260 (323)
Q Consensus       185 aL~~L~~~~-~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~  260 (323)
                      +|.+|+... +.+..+.+.|+++.|+.++.++  .++..++++|.+++.. +..+..+.+.|+++.|+.++.+++ +.++
T Consensus       215 ~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~-~~vr  293 (450)
T 2jdq_A          215 ALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPK-ESIK  293 (450)
T ss_dssp             HHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSS-HHHH
T ss_pred             HHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCC-HHHH
Confidence            999999876 5566677889999999999876  6799999999999986 566677888899999999999754 8999


Q ss_pred             HHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhcc
Q 020640          261 ENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRT  316 (323)
Q Consensus       261 ~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~  316 (323)
                      ..|+++|.+++...+.....++ +.++++.|++++.++++.++..|+++|.+++..
T Consensus       294 ~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~  348 (450)
T 2jdq_A          294 KEACWTISNITAGNRAQIQTVI-DANIFPALISILQTAEFRTRKEAAWAITNATSG  348 (450)
T ss_dssp             HHHHHHHHHHTTSCHHHHHHHH-HTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHH-HCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcC
Confidence            9999999999987766555554 579999999999999999999999999999863

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.95  E-value=5.2e-27  Score=203.38  Aligned_cols=236  Identities=15%  Similarity=0.254  Sum_probs=209.9

Q ss_pred             cCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHH-hccccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcC
Q 020640           72 HDAIPQLLSPLSESKCENGINPNLQEDVITTLLN-LSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSA  150 (323)
Q Consensus        72 ~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~-ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~  150 (323)
                      ....+.++..|+      +++++++..|+..|.+ ++..++++..+.+.+ +++.|+.+|++++++++..++++|.+++.
T Consensus        11 ~~~~~~~~~~L~------s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g-~i~~L~~lL~~~~~~v~~~a~~~L~~l~~   83 (252)
T 4db8_A           11 GSELPQMTQQLN------SDDMQEQLSATRKFSQILSDGNEQIQAVIDAG-ALPALVQLLSSPNEQILQEALWALSNIAS   83 (252)
T ss_dssp             TCSHHHHHHHHH------SSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHGGGCSCHHHHHHHHHHHHHHTT
T ss_pred             cchHHHHHHHHc------CCCHHHHHHHHHHHHHHHcCCCchHHHHHHcC-cHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence            456899999999      7889999999999976 444555788888864 79999999999999999999999999997


Q ss_pred             -CCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHHhccCCchh-HHHHhhCchHHHHHHhhcC--chHHHHHHHHH
Q 020640          151 -LDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENK-ARAVRDGGVSVILKKIMDG--VHVDELLAILA  226 (323)
Q Consensus       151 -~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~-~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~  226 (323)
                       .++++..+.+.|+++.|+++|+++++.++..|+++|+||+.+++.+ ..+.+.|+++.|+.+|+++  .++..++++|.
T Consensus        84 ~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~  163 (252)
T 4db8_A           84 GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALS  163 (252)
T ss_dssp             SCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHH
Confidence             5678889999999999999999999999999999999999999888 7788899999999999877  67999999999


Q ss_pred             HHhc-CHHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHH
Q 020640          227 MLST-NHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRK  305 (323)
Q Consensus       227 ~l~~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~  305 (323)
                      +++. .++.+..+.+.|+++.|+.++++++ +.++..|+++|.+++..+++.. ..+.+.|+++.|+++++++++++++.
T Consensus       164 ~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~~-~~~~~~g~i~~L~~ll~~~~~~v~~~  241 (252)
T 4db8_A          164 NIASGGNEQIQAVIDAGALPALVQLLSSPN-EQILQEALWALSNIASGGNEQK-QAVKEAGALEKLEQLQSHENEKIQKE  241 (252)
T ss_dssp             HHTTSCHHHHHHHHHTTCHHHHHHGGGCSS-HHHHHHHHHHHHHHTTSCHHHH-HHHHHTTHHHHHHTTTTCSSSHHHHT
T ss_pred             HHHcCChHHHHHHHHCCCHHHHHHHHCCCC-HHHHHHHHHHHHHHhcCCHHHH-HHHHHCCcHHHHHHHhCCCCHHHHHH
Confidence            9998 4678888899999999999999664 9999999999999998877644 44457899999999999999999999


Q ss_pred             HHHHHHHHhcc
Q 020640          306 ATGILERLKRT  316 (323)
Q Consensus       306 A~~~L~~l~~~  316 (323)
                      |.++|.+|+.+
T Consensus       242 A~~~L~~l~~~  252 (252)
T 4db8_A          242 AQEALEKLQSH  252 (252)
T ss_dssp             HHHHHHTTC--
T ss_pred             HHHHHHHHhcC
Confidence            99999999753

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=99.95  E-value=8.4e-27  Score=222.80  Aligned_cols=279  Identities=19%  Similarity=0.183  Sum_probs=243.1

Q ss_pred             hhhhhHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHH
Q 020640           27 EADRDHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLN  105 (323)
Q Consensus        27 ~~~~~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~  105 (323)
                      ....|.++.|+++|+ +++.+|..|+..|.+++. ++.++..+....|+++.|+++|..     +++++++..++.+|.+
T Consensus        13 ~~~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~-~~~~~~~~~~~~~~i~~Lv~~L~~-----~~~~~~~~~a~~~L~~   86 (529)
T 1jdh_A           13 ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSK-KEASRHAIMRSPQMVSAIVRTMQN-----TNDVETARCTAGTLHN   86 (529)
T ss_dssp             ----CHHHHHHHHHTCSCHHHHHHHHHHHHHHHT-SHHHHHHHHTCHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHH
T ss_pred             hhhHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHc-CCccHHHHHhCcchHHHHHHHHhc-----CCCHHHHHHHHHHHHH
Confidence            355689999999996 778999999999999996 455776666525899999999974     4478999999999999


Q ss_pred             hccccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-CCchhhhhccCChHHHHHHhhhcCHhHHHHHHH
Q 020640          106 LSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSAL-DSNKEVIGKSGALKPLIDLLDEGHQSAMKDVAS  184 (323)
Q Consensus       106 ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~  184 (323)
                      ++..++++..+.+. |.++.|+.+++++++.++..++++|.+++.+ ++.+..+.+.|+++.|++++.+++..++..++.
T Consensus        87 ls~~~~~~~~i~~~-g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~  165 (529)
T 1jdh_A           87 LSHHREGLLAIFKS-GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTD  165 (529)
T ss_dssp             HTTSHHHHHHHHHT-THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHH
T ss_pred             HHcCchhHHHHHHc-CCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHH
Confidence            99998899999987 4799999999999999999999999999976 456777778999999999999999999999999


Q ss_pred             HHHHhccCC-chhHHHHhhCchHHHHHHhhcC---chHHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHhccCChhHH
Q 020640          185 AIFNLCITH-ENKARAVRDGGVSVILKKIMDG---VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNK  260 (323)
Q Consensus       185 aL~~L~~~~-~~~~~i~~~g~v~~Lv~ll~~~---~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~  260 (323)
                      +|++++..+ +++..+.+.|+++.|+.+++++   ..++.++.+|.+++.+++++..+++.|+++.|+.++++++ +.++
T Consensus       166 ~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~-~~~~  244 (529)
T 1jdh_A          166 CLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPS-QRLV  244 (529)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSC-HHHH
T ss_pred             HHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCC-hHHH
Confidence            999999864 6788888899999999999976   4577889999999999999999999999999999999764 8999


Q ss_pred             HHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhcch
Q 020640          261 ENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTV  317 (323)
Q Consensus       261 ~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~  317 (323)
                      +.++++|.+|+...+..  ..  ..++++.|++++.++++.++..|+++|.+|+...
T Consensus       245 ~~a~~~L~~l~~~~~~~--~~--~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~  297 (529)
T 1jdh_A          245 QNCLWTLRNLSDAATKQ--EG--MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNN  297 (529)
T ss_dssp             HHHHHHHHHHHTTCTTC--SC--CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHhcCChhh--HH--HHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC
Confidence            99999999999876431  12  3489999999999999999999999999998753

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=99.95  E-value=2.3e-26  Score=225.60  Aligned_cols=279  Identities=19%  Similarity=0.186  Sum_probs=244.6

Q ss_pred             hhhhhHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHH
Q 020640           27 EADRDHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLN  105 (323)
Q Consensus        27 ~~~~~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~  105 (323)
                      ....|.++.|+++|+ +++.+|..|+.+|.+++.++ .++..+....|+++.|+++|..     +++++++..|+.+|.+
T Consensus        10 ~~~~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~-~~~~~i~~~~~~i~~Lv~~L~~-----~~~~~~~~~A~~~L~~   83 (644)
T 2z6h_A           10 ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKE-ASRHAIMRSPQMVSAIVRTMQN-----TNDVETARCTAGTLHN   83 (644)
T ss_dssp             --CTTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTST-THHHHHTTCHHHHHHHHHHHHS-----CCCHHHHHHHHHHHHH
T ss_pred             hhhhchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCC-hhHHHHHhccChHHHHHHHHhc-----CCCHHHHHHHHHHHHH
Confidence            356689999999996 77899999999999999755 4677776525899999999983     3479999999999999


Q ss_pred             hccccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC-CchhhhhccCChHHHHHHhhhcCHhHHHHHHH
Q 020640          106 LSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALD-SNKEVIGKSGALKPLIDLLDEGHQSAMKDVAS  184 (323)
Q Consensus       106 ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~  184 (323)
                      |+..++++..+.+. |+++.|+.+|+++++.++..++++|.+|+... +.+..+.+.|+++.|+++|++++..++..++.
T Consensus        84 Ls~~~~~~~~i~~~-g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~  162 (644)
T 2z6h_A           84 LSHHREGLLAIFKS-GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTD  162 (644)
T ss_dssp             HTTSHHHHHHHHTT-THHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHH
T ss_pred             HhcChhhHHHHHHc-CCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHH
Confidence            99998899999987 57999999999999999999999999998764 55677778999999999999999989999999


Q ss_pred             HHHHhcc-CCchhHHHHhhCchHHHHHHhhcC---chHHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHhccCChhHH
Q 020640          185 AIFNLCI-THENKARAVRDGGVSVILKKIMDG---VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNK  260 (323)
Q Consensus       185 aL~~L~~-~~~~~~~i~~~g~v~~Lv~ll~~~---~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~  260 (323)
                      +|++|+. +++++..+.+.|+++.|+++++++   ..++.++.+|.+++.+++++..+++.|+++.|+.+++.++ ..++
T Consensus       163 ~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~-~~~~  241 (644)
T 2z6h_A          163 CLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPS-QRLV  241 (644)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSC-HHHH
T ss_pred             HHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCC-HHHH
Confidence            9999997 457888899999999999999976   4678899999999999999999999999999999999764 9999


Q ss_pred             HHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhcch
Q 020640          261 ENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTV  317 (323)
Q Consensus       261 ~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~  317 (323)
                      +.++++|.+|+...+..  ..  ..++++.|++++.++++++++.|+++|.+|+...
T Consensus       242 ~~a~~~L~nL~~~~~~~--~~--~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~  294 (644)
T 2z6h_A          242 QNCLWTLRNLSDAATKQ--EG--MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNN  294 (644)
T ss_dssp             HHHHHHHHHHGGGCTTC--CS--CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHhhcchhh--hh--hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence            99999999999876431  22  2489999999999999999999999999998753

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=99.95  E-value=1.4e-25  Score=214.30  Aligned_cols=280  Identities=15%  Similarity=0.118  Sum_probs=242.0

Q ss_pred             hhhhHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHh
Q 020640           28 ADRDHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNL  106 (323)
Q Consensus        28 ~~~~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~l  106 (323)
                      .+.|.++.|+++++ +++.++..|+.+|.+++.+++..+..+.+ .|+++.|+++|+      +++++++..++.+|.++
T Consensus        98 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~-~g~i~~L~~ll~------~~~~~~~~~~~~~L~~l  170 (529)
T 1jdh_A           98 FKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRL-AGGLQKMVALLN------KTNVKFLAITTDCLQIL  170 (529)
T ss_dssp             HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHH-HTHHHHHHHGGG------CCCHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHH-cCCHHHHHHHHh------cCCHHHHHHHHHHHHHH
Confidence            45589999999996 66889999999999999887788888989 999999999999      67889999999999999


Q ss_pred             ccc-cchhhhhhccCCcHHHHHHHHhcC-CHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHHH
Q 020640          107 SIH-DNNKKLVAETPMVIPLLMDALRSG-TIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVAS  184 (323)
Q Consensus       107 s~~-~~~~~~i~~~~g~i~~Lv~ll~~~-~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~  184 (323)
                      +.. ++++..+.+.+ .++.|+.+++++ ....++.++.+|++|+..++++..+.+.|+++.|++++.+++..++..+++
T Consensus       171 a~~~~~~~~~i~~~~-~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~  249 (529)
T 1jdh_A          171 AYGNQESKLIILASG-GPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLW  249 (529)
T ss_dssp             HTTCHHHHHHHHHTT-HHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHH
T ss_pred             HhCCHHHHHHHHHCC-CHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHH
Confidence            985 45788888865 699999999876 467778899999999999999999999999999999999999999999999


Q ss_pred             HHHHhccCCchhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcC-HHHHHHHHhcCCHHHHHHHHhccC-ChhHH
Q 020640          185 AIFNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTN-HRAVEEIGDLGGVSCMLRIIREST-CDRNK  260 (323)
Q Consensus       185 aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~-~~~~~~i~~~g~i~~Lv~ll~~~~-~~~~~  260 (323)
                      +|.+|+.......  ...|+++.|++++.++  .++..++++|.+++.+ ++++..+.+.|+++.|++++...+ ++.++
T Consensus       250 ~L~~l~~~~~~~~--~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~  327 (529)
T 1jdh_A          250 TLRNLSDAATKQE--GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDIT  327 (529)
T ss_dssp             HHHHHHTTCTTCS--CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHhcCChhhH--HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHH
Confidence            9999998764322  2247899999999876  6899999999999995 689999999999999999998633 37899


Q ss_pred             HHHHHHHHHhcccChH--hHHHHHhhcccHHHHHHHhhcCC-HHHHHHHHHHHHHHhcch
Q 020640          261 ENCIAILHTICLSDRT--KWKAMREEESTHGTISKLAQDGT-ARAKRKATGILERLKRTV  317 (323)
Q Consensus       261 ~~a~~~L~~L~~~~~~--~~~~~~~~~~~i~~L~~ll~~~~-~~~~~~A~~~L~~l~~~~  317 (323)
                      +.|+.+|.+|+.+++.  ..+..+.+.|+++.|++++++++ +.+++.|+++|.+++...
T Consensus       328 ~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~  387 (529)
T 1jdh_A          328 EPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP  387 (529)
T ss_dssp             HHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSG
T ss_pred             HHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcCh
Confidence            9999999999987543  23445557899999999999886 699999999999998643

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=99.94  E-value=3.9e-25  Score=216.94  Aligned_cols=280  Identities=15%  Similarity=0.120  Sum_probs=241.5

Q ss_pred             hhhhHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHh
Q 020640           28 ADRDHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNL  106 (323)
Q Consensus        28 ~~~~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~l  106 (323)
                      .+.|.++.|+++++ +++.++..|+.+|.+++..++..+..+.+ .|+++.|+++|+      ++++.++..++.+|.++
T Consensus        95 ~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~-~g~i~~Lv~lL~------~~~~~~~~~a~~~L~~L  167 (644)
T 2z6h_A           95 FKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRL-AGGLQKMVALLN------KTNVKFLAITTDCLQIL  167 (644)
T ss_dssp             HTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHH-TTHHHHHHHGGG------CCCHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHH-CCChHHHHHHHC------cCCHHHHHHHHHHHHHH
Confidence            35589999999996 66889999999999999887778888888 999999999999      66788899999999999


Q ss_pred             cc-ccchhhhhhccCCcHHHHHHHHhcC-CHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHHH
Q 020640          107 SI-HDNNKKLVAETPMVIPLLMDALRSG-TIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVAS  184 (323)
Q Consensus       107 s~-~~~~~~~i~~~~g~i~~Lv~ll~~~-~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~  184 (323)
                      +. .++++..+.+.+ .++.|+.++++. ....++.++.+|++|+..++++..+++.|+++.|++++.+++..++..+++
T Consensus       168 a~~~~~~~~~i~~~g-~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~  246 (644)
T 2z6h_A          168 AYGNQESKLIILASG-GPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLW  246 (644)
T ss_dssp             HTTCHHHHHHHHHTT-HHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHH
T ss_pred             HhcCcHHHHHHHHcC-ChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHH
Confidence            97 455888888865 699999999876 467889999999999999999999999999999999999999999999999


Q ss_pred             HHHHhccCCchhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcC-HHHHHHHHhcCCHHHHHHHHhccCC-hhHH
Q 020640          185 AIFNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTN-HRAVEEIGDLGGVSCMLRIIRESTC-DRNK  260 (323)
Q Consensus       185 aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~-~~~~  260 (323)
                      +|.||+......  ....|+++.|+.++.++  .+++.++++|.+|+.. ++++..+++.|+++.|+.++.+.++ +.++
T Consensus       247 ~L~nL~~~~~~~--~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~  324 (644)
T 2z6h_A          247 TLRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDIT  324 (644)
T ss_dssp             HHHHHGGGCTTC--CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHhhcchhh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHH
Confidence            999999865432  12237899999999876  6899999999999995 6889999999999999999986432 6899


Q ss_pred             HHHHHHHHHhcccChH--hHHHHHhhcccHHHHHHHhhcCC-HHHHHHHHHHHHHHhcch
Q 020640          261 ENCIAILHTICLSDRT--KWKAMREEESTHGTISKLAQDGT-ARAKRKATGILERLKRTV  317 (323)
Q Consensus       261 ~~a~~~L~~L~~~~~~--~~~~~~~~~~~i~~L~~ll~~~~-~~~~~~A~~~L~~l~~~~  317 (323)
                      +.|+++|.+|+...++  ..+..+.+.++++.|++++.+++ +.+++.|+++|.||+...
T Consensus       325 ~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~  384 (644)
T 2z6h_A          325 EPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP  384 (644)
T ss_dssp             HHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSG
T ss_pred             HHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCH
Confidence            9999999999986542  23444556899999999999874 799999999999998643

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.93  E-value=9.5e-25  Score=218.22  Aligned_cols=276  Identities=18%  Similarity=0.192  Sum_probs=242.1

Q ss_pred             hhHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhcc
Q 020640           30 RDHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSI  108 (323)
Q Consensus        30 ~~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~  108 (323)
                      .+.++.|+++|. +++.+|..|+.+|.+++.. ..++..+.+..|+++.|+++|+.     +++++++..|+.+|.+|+.
T Consensus       149 ~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~-~~~~~~i~~~~~~i~~Lv~~L~~-----~~d~~vr~~Aa~aL~~Ls~  222 (780)
T 2z6g_A          149 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKK-EASRHAIMRSPQMVSAIVRTMQN-----TNDVETARCTSGTLHNLSH  222 (780)
T ss_dssp             HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTS-HHHHHHHTTCHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHHHHT
T ss_pred             hCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCC-ChhHHHHHhccChHHHHHHHHcC-----CCCHHHHHHHHHHHHHHhC
Confidence            678999999996 6788999999999999964 55677777525899999999984     4489999999999999999


Q ss_pred             ccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC-CchhhhhccCChHHHHHHhhhcCHhHHHHHHHHHH
Q 020640          109 HDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALD-SNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIF  187 (323)
Q Consensus       109 ~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~  187 (323)
                      ..+++..+.+. |+++.|+.+|+++++.++..|+++|.+|+... +.+..+.+.|+++.|+++|.+++..++..++.+|+
T Consensus       223 ~~~~~~~i~~~-g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~  301 (780)
T 2z6g_A          223 HREGLLAIFKS-GGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQ  301 (780)
T ss_dssp             SHHHHHHHHHT-THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHH
T ss_pred             CchhHHHHHHc-CCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            88888888886 57999999999999999999999999999764 55666677999999999999999999999999999


Q ss_pred             HhccCC-chhHHHHhhCchHHHHHHhhcC---chHHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHhccCChhHHHHH
Q 020640          188 NLCITH-ENKARAVRDGGVSVILKKIMDG---VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENC  263 (323)
Q Consensus       188 ~L~~~~-~~~~~i~~~g~v~~Lv~ll~~~---~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a  263 (323)
                      +|+..+ +++..+++.|+++.|+.+++++   ..++.++.+|.+++.+++++..+++.|+++.|+.++.+++ ..+++.|
T Consensus       302 ~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~-~~~~~~a  380 (780)
T 2z6g_A          302 ILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPS-QRLVQNC  380 (780)
T ss_dssp             HHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSC-HHHHHHH
T ss_pred             HHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCc-hHHHHHH
Confidence            999754 7888888999999999999976   3567889999999999999999999999999999999664 8899999


Q ss_pred             HHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhcch
Q 020640          264 IAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTV  317 (323)
Q Consensus       264 ~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~  317 (323)
                      +++|.+|+...+..  .  ...++++.|++++.+.++.++..|+++|.+|+...
T Consensus       381 ~~~L~~L~~~~~~~--~--~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~  430 (780)
T 2z6g_A          381 LWTLRNLSDAATKQ--E--GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNN  430 (780)
T ss_dssp             HHHHHHHHTTCTTC--S--CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSC
T ss_pred             HHHHHHHhccchhh--h--hhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC
Confidence            99999999876431  1  23578999999999999999999999999998753

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.93  E-value=2.1e-25  Score=189.93  Aligned_cols=193  Identities=17%  Similarity=0.236  Sum_probs=169.1

Q ss_pred             CCHHHHHHhhcccccCCCCCH--HHHHHHHHHHHHhcccc-chhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 020640           73 DAIPQLLSPLSESKCENGINP--NLQEDVITTLLNLSIHD-NNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLS  149 (323)
Q Consensus        73 g~i~~Lv~lL~~~~~~~~~~~--~~~~~a~~~L~~ls~~~-~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~  149 (323)
                      -.+|.|+++|+      ++++  +++..|+..|.+++..+ +++..+.+.| .+|.|+.+|+++++++++.|+++|.||+
T Consensus         8 ~~i~~lV~lL~------s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G-~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa   80 (233)
T 3tt9_A            8 MTLERAVSMLE------ADHMLPSRISAAATFIQHECFQKSEARKRVNQLR-GILKLLQLLKVQNEDVQRAVCGALRNLV   80 (233)
T ss_dssp             CCHHHHHHTCC------SSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTT-HHHHHHHGGGCCCHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHhC------CCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcC-CHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence            36899999999      5555  89999999999999754 4888898876 5999999999999999999999999999


Q ss_pred             C-CCCchhhhhccCChHHHHHHhhh-cCHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhh--------------
Q 020640          150 A-LDSNKEVIGKSGALKPLIDLLDE-GHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIM--------------  213 (323)
Q Consensus       150 ~-~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~--------------  213 (323)
                      . +++++..+++.|+|++|+++|++ ++.++++.+..+||||+..+++|..+++. ++++|+.++.              
T Consensus        81 ~~~~~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~  159 (233)
T 3tt9_A           81 FEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKA  159 (233)
T ss_dssp             TTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCC
T ss_pred             hCCHHHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCcccccccc
Confidence            7 57899999999999999999985 68999999999999999999999999875 7999988653              


Q ss_pred             ----cCchHHHHHHHHHHHhc-CHHHHHHHHhc-CCHHHHHHHHhcc-----CChhHHHHHHHHHHHhccc
Q 020640          214 ----DGVHVDELLAILAMLST-NHRAVEEIGDL-GGVSCMLRIIRES-----TCDRNKENCIAILHTICLS  273 (323)
Q Consensus       214 ----~~~~~~~a~~~L~~l~~-~~~~~~~i~~~-g~i~~Lv~ll~~~-----~~~~~~~~a~~~L~~L~~~  273 (323)
                          +..++++|.++|+||+. +++.|+.|.+. |+|+.|+.+++.+     .+++.+++|+++|+||++.
T Consensus       160 ~~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~  230 (233)
T 3tt9_A          160 NGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ  230 (233)
T ss_dssp             CTTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred             cccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence                11568999999999998 67999999986 6789999999863     2468999999999999985

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.93  E-value=2.4e-24  Score=208.96  Aligned_cols=285  Identities=12%  Similarity=0.096  Sum_probs=235.1

Q ss_pred             hhhhHHHHHHHHhc--CCchhHHHHHHHHHHHhccChh--------------------------------------hHHH
Q 020640           28 ADRDHFLSLLKKMS--ATLPDQTEAAKELRLLTKRMPS--------------------------------------FRAL   67 (323)
Q Consensus        28 ~~~~~i~~Lv~~l~--~~~~~~~~a~~~L~~l~~~~~~--------------------------------------~~~~   67 (323)
                      .+.+.++.|+++++  ++......++.+|.|++...+.                                      ++..
T Consensus       373 ~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~  452 (778)
T 3opb_A          373 SNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKY  452 (778)
T ss_dssp             HCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHH
T ss_pred             hCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHH
Confidence            56788999999996  4577888999999999974331                                      4567


Q ss_pred             HhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchhhhhhccCCcHHHHHHHHhcCCHH---HHHHHHHH
Q 020640           68 FGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIE---TRSNAAAA  144 (323)
Q Consensus        68 i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~---~~~~a~~~  144 (323)
                      +.+ .|+++.|+.+++      ++++.+++.|+++|.|++.+.++|..+++.| +++.|+.++.+.+..   .+..|+.+
T Consensus       453 l~e-aGvIp~Lv~Ll~------S~s~~~re~A~~aL~nLS~d~~~R~~lvqqG-al~~LL~lL~s~~~~~~~~k~~AA~A  524 (778)
T 3opb_A          453 ILR-TELISFLKREMH------NLSPNCKQQVVRIIYNITRSKNFIPQLAQQG-AVKIILEYLANKQDIGEPIRILGCRA  524 (778)
T ss_dssp             TTT-TTHHHHHHHHGG------GSCHHHHHHHHHHHHHHHTSGGGHHHHHHTT-HHHHHHHHTTCC---CCHHHHHHHHH
T ss_pred             HHH-CcCHHHHHHHHc------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHCC-CHHHHHHHHhcCCCcchHHHHHHHHH
Confidence            788 999999999999      6789999999999999999999999999975 699999999887654   89999999


Q ss_pred             HHHhcCCCCchhhhh--c-cCChHHHHHHhhh--cCH------------hHHHHHHHHHHHhccCCc-----hhHHHHhh
Q 020640          145 LFTLSALDSNKEVIG--K-SGALKPLIDLLDE--GHQ------------SAMKDVASAIFNLCITHE-----NKARAVRD  202 (323)
Q Consensus       145 L~~L~~~~~~~~~i~--~-~g~i~~Lv~lL~~--~~~------------~~~~~al~aL~~L~~~~~-----~~~~i~~~  202 (323)
                      |.+++...+....+.  . .|++++|+++|..  +..            .-+..|+.||.||+..++     .+..++++
T Consensus       525 LArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~  604 (778)
T 3opb_A          525 LTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVST  604 (778)
T ss_dssp             HHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHS
T ss_pred             HHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHh
Confidence            999986665444432  1 4899999999983  111            127799999999999873     47888885


Q ss_pred             -CchHHHHHHhhcC--chHHHHHHHHHHHhcCHHHH-HHHHhcC------CHHHHHHHHhccCChhHHHHHHHHHHHhcc
Q 020640          203 -GGVSVILKKIMDG--VHVDELLAILAMLSTNHRAV-EEIGDLG------GVSCMLRIIRESTCDRNKENCIAILHTICL  272 (323)
Q Consensus       203 -g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~~~~~-~~i~~~g------~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~  272 (323)
                       |+++.|..+|.++  .++..|+++++||+.+++.. ..+.+.+      .++.|+.++..++ .++|++|+++|.+++.
T Consensus       605 ~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D-~~~r~AAagALAnLts  683 (778)
T 3opb_A          605 KVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSD-VESQRAVAAIFANIAT  683 (778)
T ss_dssp             HHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSC-HHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCC-HHHHHHHHHHHHHhcC
Confidence             9999999999876  58999999999999998875 3554322      3889999998654 9999999999999987


Q ss_pred             cChHhHHHHHhhcccHHHHHHHhhc--CCHHHHHHHHHHHHHHhcchhhcc
Q 020640          273 SDRTKWKAMREEESTHGTISKLAQD--GTARAKRKATGILERLKRTVNLTH  321 (323)
Q Consensus       273 ~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~~~~~A~~~L~~l~~~~~~~~  321 (323)
                      ..+..++.++...++++.|+.++++  +++.++.++..++.||..+++..+
T Consensus       684 ~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~~~~~  734 (778)
T 3opb_A          684 TIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVIPDNG  734 (778)
T ss_dssp             HCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTCCSTT
T ss_pred             CChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhhccCC
Confidence            7766667787766999999999999  899999999999999998665443

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.93  E-value=6.2e-24  Score=212.33  Aligned_cols=279  Identities=15%  Similarity=0.126  Sum_probs=239.6

Q ss_pred             hhhHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhc
Q 020640           29 DRDHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLS  107 (323)
Q Consensus        29 ~~~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls  107 (323)
                      ..|.++.|+++|+ +++.++..|+.+|.+++..+++.+..+.+ .|+++.|+++|+      +++..++..++.+|.+++
T Consensus       232 ~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~-~g~v~~Lv~lL~------~~~~~v~~~a~~aL~~La  304 (780)
T 2z6g_A          232 KSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRL-AGGLQKMVALLN------KTNVKFLAITTDCLQILA  304 (780)
T ss_dssp             HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHH-TTHHHHHHHGGG------CCCHHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHH-cCCHHHHHHHHh------cCCHHHHHHHHHHHHHHh
Confidence            4589999999996 66889999999999999887888888888 999999999999      678899999999999998


Q ss_pred             cc-cchhhhhhccCCcHHHHHHHHhcCC-HHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHH
Q 020640          108 IH-DNNKKLVAETPMVIPLLMDALRSGT-IETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASA  185 (323)
Q Consensus       108 ~~-~~~~~~i~~~~g~i~~Lv~ll~~~~-~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~a  185 (323)
                      .. ++++..+.+.+ .++.|+.++++.+ ...++.++.+|.+|+..+.++..+++.|+++.|+.++.+++..++..++++
T Consensus       305 ~~~~e~~~~i~~~~-~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~  383 (780)
T 2z6g_A          305 YGNQESKLIILASG-GPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWT  383 (780)
T ss_dssp             TTCHHHHHHHHTTT-HHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHH
T ss_pred             cCChHHHHHHHHcC-CHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHH
Confidence            75 45788888865 6999999998764 566778999999999988899999999999999999999999999999999


Q ss_pred             HHHhccCCchhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcC-HHHHHHHHhcCCHHHHHHHHhccCC-hhHHH
Q 020640          186 IFNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTN-HRAVEEIGDLGGVSCMLRIIRESTC-DRNKE  261 (323)
Q Consensus       186 L~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~-~~~~~  261 (323)
                      |.+|+......  ....++++.|+.+|.+.  .+++.|+++|.+|+.. ++.+..+++.|+++.|++++.+.++ +.+++
T Consensus       384 L~~L~~~~~~~--~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~  461 (780)
T 2z6g_A          384 LRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITE  461 (780)
T ss_dssp             HHHHHTTCTTC--SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHhccchhh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHH
Confidence            99999866431  12246899999999876  6899999999999996 6888999999999999999986332 48999


Q ss_pred             HHHHHHHHhcccChH--hHHHHHhhcccHHHHHHHhhcCC-HHHHHHHHHHHHHHhcch
Q 020640          262 NCIAILHTICLSDRT--KWKAMREEESTHGTISKLAQDGT-ARAKRKATGILERLKRTV  317 (323)
Q Consensus       262 ~a~~~L~~L~~~~~~--~~~~~~~~~~~i~~L~~ll~~~~-~~~~~~A~~~L~~l~~~~  317 (323)
                      .|+++|.+|+...++  ..+..+...++++.|++++.+++ +.+++.|+++|.||+...
T Consensus       462 ~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~  520 (780)
T 2z6g_A          462 PAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP  520 (780)
T ss_dssp             HHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSH
T ss_pred             HHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCH
Confidence            999999999986543  12345557899999999999886 599999999999998643

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.92  E-value=9.2e-24  Score=177.90  Aligned_cols=195  Identities=15%  Similarity=0.273  Sum_probs=174.2

Q ss_pred             CCcHHHHHHHHhcCCHHHHHHHHHHHHHhcC-CCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHHhccCC-chhH
Q 020640          120 PMVIPLLMDALRSGTIETRSNAAAALFTLSA-LDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITH-ENKA  197 (323)
Q Consensus       120 ~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~-~~~~  197 (323)
                      +|..+.|+.++++++++++..++++|.+++. .++++..+.+.|+++.|+++|.++++.++..|+++|.||+.++ +++.
T Consensus        11 ~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~   90 (210)
T 4db6_A           11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ   90 (210)
T ss_dssp             --CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             cchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHH
Confidence            3568999999999999999999999999994 5567888899999999999999999999999999999999755 6778


Q ss_pred             HHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhc-CHHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHhcccC
Q 020640          198 RAVRDGGVSVILKKIMDG--VHVDELLAILAMLST-NHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSD  274 (323)
Q Consensus       198 ~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~  274 (323)
                      .+++.|+++.|+.+|+++  .++..++++|.|++. +++.+..+++.|+++.|++++++++ +.++..|+++|.+++..+
T Consensus        91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~-~~v~~~a~~aL~~l~~~~  169 (210)
T 4db6_A           91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPN-EQILQEALWALSNIASGG  169 (210)
T ss_dssp             HHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTSC
T ss_pred             HHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCC
Confidence            888999999999999987  689999999999997 5777888999999999999999764 999999999999999987


Q ss_pred             hHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhcc
Q 020640          275 RTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRT  316 (323)
Q Consensus       275 ~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~  316 (323)
                      ++. +..+.+.|+++.|++++.++++.++++|.++|.+|+.+
T Consensus       170 ~~~-~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~  210 (210)
T 4db6_A          170 NEQ-KQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQSH  210 (210)
T ss_dssp             HHH-HHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC-
T ss_pred             cHH-HHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhcC
Confidence            664 45555789999999999999999999999999999753

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.92  E-value=1.6e-24  Score=184.46  Aligned_cols=192  Identities=20%  Similarity=0.219  Sum_probs=169.4

Q ss_pred             hHHHHHHHHhc-CCc--hhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhc
Q 020640           31 DHFLSLLKKMS-ATL--PDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLS  107 (323)
Q Consensus        31 ~~i~~Lv~~l~-~~~--~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls  107 (323)
                      ..++.+|++|+ +++  +++..|+..|.+++..+++++..+.+ .|+||.|+++|+      ++++++++.|+++|.||+
T Consensus         8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~-~G~Ip~LV~lL~------s~~~~vq~~Aa~aL~nLa   80 (233)
T 3tt9_A            8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQ-LRGILKLLQLLK------VQNEDVQRAVCGALRNLV   80 (233)
T ss_dssp             CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHH-TTHHHHHHHGGG------CCCHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHH-cCCHHHHHHHHc------CCCHHHHHHHHHHHHHHH
Confidence            57999999996 556  78899999999999888999999999 999999999999      778999999999999999


Q ss_pred             cc-cchhhhhhccCCcHHHHHHHHh-cCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhh---h---------
Q 020640          108 IH-DNNKKLVAETPMVIPLLMDALR-SGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLD---E---------  173 (323)
Q Consensus       108 ~~-~~~~~~i~~~~g~i~~Lv~ll~-~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~---~---------  173 (323)
                      .+ ++++..|.+.| .+|.|+.+|+ +++.++++.++.+|+||+..++++..+++. ++++|++++.   +         
T Consensus        81 ~~~~~nk~~I~~~G-aI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~  158 (233)
T 3tt9_A           81 FEDNDNKLEVAELN-GVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPK  158 (233)
T ss_dssp             TTCHHHHHHHHHTT-HHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCC
T ss_pred             hCCHHHHHHHHHcC-CHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCccccccc
Confidence            85 56899999975 6999999998 478999999999999999999999999875 6999998763   1         


Q ss_pred             ----cCHhHHHHHHHHHHHhccCC-chhHHHHhh-CchHHHHHHhhcC--------chHHHHHHHHHHHhcC
Q 020640          174 ----GHQSAMKDVASAIFNLCITH-ENKARAVRD-GGVSVILKKIMDG--------VHVDELLAILAMLSTN  231 (323)
Q Consensus       174 ----~~~~~~~~al~aL~~L~~~~-~~~~~i~~~-g~v~~Lv~ll~~~--------~~~~~a~~~L~~l~~~  231 (323)
                          .+..++.+|.++|+||+..+ ++|..+.+. |+|+.|+.+++.+        ..++.|+.+|+||+..
T Consensus       159 ~~~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~  230 (233)
T 3tt9_A          159 ANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ  230 (233)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred             ccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence                25689999999999999866 888889886 7789999999852        4689999999999873

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.91  E-value=2.8e-23  Score=174.96  Aligned_cols=193  Identities=13%  Similarity=0.237  Sum_probs=173.0

Q ss_pred             cCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhcccc-chhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcC
Q 020640           72 HDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHD-NNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSA  150 (323)
Q Consensus        72 ~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~-~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~  150 (323)
                      .|..+.|+.+|+      ++++.++..|+.+|.+++..+ +.+..+.+.+ +++.|+.+|++++++++..++++|.+++.
T Consensus        11 ~~~~~~l~~LL~------s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g-~i~~L~~lL~~~~~~v~~~a~~~L~~l~~   83 (210)
T 4db6_A           11 GSELPQMVQQLN------SPDQQELQSALRKLSQIASGGNEQIQAVIDAG-ALPALVQLLSSPNEQILQEALWALSNIAS   83 (210)
T ss_dssp             --CHHHHHHHTT------CSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTT-HHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred             cchhHHHHHHhc------CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcC-CHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence            688999999999      789999999999999999554 4777888865 79999999999999999999999999995


Q ss_pred             -CCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHHhccCCc-hhHHHHhhCchHHHHHHhhcC--chHHHHHHHHH
Q 020640          151 -LDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHE-NKARAVRDGGVSVILKKIMDG--VHVDELLAILA  226 (323)
Q Consensus       151 -~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~-~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~  226 (323)
                       .++++..+++.|+++.|+++|+++++.++..|+++|+||+.+++ .+..+++.|+++.|+++++++  .++..++++|.
T Consensus        84 ~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~  163 (210)
T 4db6_A           84 GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALS  163 (210)
T ss_dssp             SCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHH
Confidence             55678888999999999999999999999999999999998664 556678889999999999976  68999999999


Q ss_pred             HHhcC-HHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHhcc
Q 020640          227 MLSTN-HRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICL  272 (323)
Q Consensus       227 ~l~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~  272 (323)
                      +++.. ++.+..+.+.|+++.|++++.+++ +.+++.|+.+|.+|+.
T Consensus       164 ~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~-~~v~~~a~~aL~~l~~  209 (210)
T 4db6_A          164 NIASGGNEQKQAVKEAGALEKLEQLQSHEN-EKIQKEAQEALEKLQS  209 (210)
T ss_dssp             HHHTSCHHHHHHHHHTTHHHHHHHGGGCSC-HHHHHHHHHHHHHHCC
T ss_pred             HHHcCCcHHHHHHHHCCCHHHHHHHHhCCC-HHHHHHHHHHHHHHhc
Confidence            99997 889999999999999999999654 9999999999999985

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.90  E-value=3.1e-22  Score=194.28  Aligned_cols=280  Identities=11%  Similarity=0.110  Sum_probs=225.7

Q ss_pred             hHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccc
Q 020640           31 DHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIH  109 (323)
Q Consensus        31 ~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~  109 (323)
                      ...+.+.+.|. ++.+.+..|+..|..++. +++.|..+++..|+++.|+++++.     .++..+...++.+|.|++..
T Consensus       334 ~La~~~~~~L~~~~~~~~~~AvEgLaYLSl-~~~VKe~L~~d~~~L~~Lv~llk~-----~~d~s~~Ygal~IL~NLt~~  407 (778)
T 3opb_A          334 QLSEIFINAISRRIVPKVEMSVEALAYLSL-KASVKIMIRSNESFTEILLTMIKS-----QKMTHCLYGLLVIMANLSTL  407 (778)
T ss_dssp             HHHHHHHHHTTTCCHHHHHHHHHHHHHHTT-SSHHHHHHHHCHHHHHHHHHHHTT-----TCCTTHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHhcCCccHHHHHHHHHHHHhC-CHHHHHHHHhCHHHHHHHHHHHhC-----CCCchHHHHHHHHHHHhcCC
Confidence            46677777775 355668999999999996 677899988757779999999984     24678899999999999753


Q ss_pred             cc---------------------------------------hhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcC
Q 020640          110 DN---------------------------------------NKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSA  150 (323)
Q Consensus       110 ~~---------------------------------------~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~  150 (323)
                      .+                                       ++..+.+ .|+++.|+.+++++++.+++.++++|.+|+.
T Consensus       408 ~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~e-aGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~  486 (778)
T 3opb_A          408 PEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILR-TELISFLKREMHNLSPNCKQQVVRIIYNITR  486 (778)
T ss_dssp             CCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTT-TTHHHHHHHHGGGSCHHHHHHHHHHHHHHHT
T ss_pred             CcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHH-CcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence            22                                       2344555 4689999999999999999999999999999


Q ss_pred             CCCchhhhhccCChHHHHHHhhhcCHh---HHHHHHHHHHHhccCCchhHHHH--h-hCchHHHHHHhhc--C-c-----
Q 020640          151 LDSNKEVIGKSGALKPLIDLLDEGHQS---AMKDVASAIFNLCITHENKARAV--R-DGGVSVILKKIMD--G-V-----  216 (323)
Q Consensus       151 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~---~~~~al~aL~~L~~~~~~~~~i~--~-~g~v~~Lv~ll~~--~-~-----  216 (323)
                      ++++|..+++.|++++|+.++.++...   .+..|+.+|.+|+...+....+-  . .|++++|+.+|..  + .     
T Consensus       487 d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~  566 (778)
T 3opb_A          487 SKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLH  566 (778)
T ss_dssp             SGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC--
T ss_pred             CHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCccccccc
Confidence            999999999999999999999987544   89999999999987665444331  1 3899999999983  2 1     


Q ss_pred             --------hHHHHHHHHHHHhcCH-----HHHHHHHhc-CCHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHH
Q 020640          217 --------HVDELLAILAMLSTNH-----RAVEEIGDL-GGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMR  282 (323)
Q Consensus       217 --------~~~~a~~~L~~l~~~~-----~~~~~i~~~-g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~  282 (323)
                              .+..|+.+|.|||..+     +.|..++++ |+++.|..++.+++ +.++++|+++++||+.+.......++
T Consensus       567 ~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n-~~VrrAA~elI~NL~~~~e~i~~k~~  645 (778)
T 3opb_A          567 NDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDEN-VPLQRSTLELISNMMSHPLTIAAKFF  645 (778)
T ss_dssp             -CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSS-HHHHHHHHHHHHHHHTSGGGTGGGTS
T ss_pred             ccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCC-HHHHHHHHHHHHHHhCCcHHHHHHHH
Confidence                    1778999999999975     568888986 99999999999654 89999999999999986643112443


Q ss_pred             hh-----cccHHHHHHHhhcCCHHHHHHHHHHHHHHh-cchh
Q 020640          283 EE-----ESTHGTISKLAQDGTARAKRKATGILERLK-RTVN  318 (323)
Q Consensus       283 ~~-----~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~-~~~~  318 (323)
                      ..     .+.++.|+.++++++.++++.|.|+|.+++ .++.
T Consensus       646 ~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~  687 (778)
T 3opb_A          646 NLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPL  687 (778)
T ss_dssp             CCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHH
T ss_pred             hhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChH
Confidence            21     224889999999999999999999999996 4443

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.88  E-value=4.3e-21  Score=169.90  Aligned_cols=222  Identities=19%  Similarity=0.169  Sum_probs=183.0

Q ss_pred             HHHHHHHHHHHHHhccccchhhhhhccCCcHHHHHH-HHhcCCHHHHHHHHHHHHHhcCCC-CchhhhhccCChHHHHHH
Q 020640           93 PNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMD-ALRSGTIETRSNAAAALFTLSALD-SNKEVIGKSGALKPLIDL  170 (323)
Q Consensus        93 ~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~-ll~~~~~~~~~~a~~~L~~L~~~~-~~~~~i~~~g~i~~Lv~l  170 (323)
                      .+-+..|+..|.++..+.++...+.+.| .++.|+. +|++++++++..|+++|.+++.+. .++..+++.|++++|+.+
T Consensus        54 ~e~k~~Al~~L~~lv~~~dna~~~~~~G-~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L  132 (296)
T 1xqr_A           54 QQEREGALELLADLCENMDNAADFCQLS-GMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL  132 (296)
T ss_dssp             HHHHHHHHHHHHHHHTSHHHHHHHHHTT-HHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhChhhHHHHHHcC-CHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence            4678889999999998888888888876 5899999 999999999999999999999764 467888899999999999


Q ss_pred             hhhc-CHhHHHHHHHHHHHhccCCc-hhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhc-CHHHHHHHHhcCCHH
Q 020640          171 LDEG-HQSAMKDVASAIFNLCITHE-NKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLST-NHRAVEEIGDLGGVS  245 (323)
Q Consensus       171 L~~~-~~~~~~~al~aL~~L~~~~~-~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~-~~~~~~~i~~~g~i~  245 (323)
                      |+++ +..++..|+++|.||+.+++ ....+++.|+++.|+.+|+++  .++..++++|.+++. +++.+..+++.|+++
T Consensus       133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~  212 (296)
T 1xqr_A          133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQ  212 (296)
T ss_dssp             HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHH
T ss_pred             HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHH
Confidence            9974 78999999999999998775 456778889999999999987  689999999999998 588999999999999


Q ss_pred             HHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHH----HHHhh-cC-CHHHHHHHHHHHHHHhcc
Q 020640          246 CMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTI----SKLAQ-DG-TARAKRKATGILERLKRT  316 (323)
Q Consensus       246 ~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L----~~ll~-~~-~~~~~~~A~~~L~~l~~~  316 (323)
                      .|+.+|..++ ..+++.|+.+|.+|+...+......-.....+..+    .+-++ ++ ..+..++|..++.++...
T Consensus       213 ~Lv~LL~~~d-~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~f~~  288 (296)
T 1xqr_A          213 QLVALVRTEH-SPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCFSS  288 (296)
T ss_dssp             HHHHHHTSCC-STHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCC-
T ss_pred             HHHHHHcCCC-hhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHcCC
Confidence            9999999654 89999999999999998654333322111112222    22344 33 678899999999988743

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.86  E-value=8.1e-20  Score=161.69  Aligned_cols=237  Identities=17%  Similarity=0.141  Sum_probs=185.8

Q ss_pred             hhhhhHHHHHHHHhcCC-------------chhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHH-hhcccccCCCCC
Q 020640           27 EADRDHFLSLLKKMSAT-------------LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLS-PLSESKCENGIN   92 (323)
Q Consensus        27 ~~~~~~i~~Lv~~l~~~-------------~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~-lL~~~~~~~~~~   92 (323)
                      +.+...++..+..|.+.             .+.+..|+..|.+++. +.++...|.+ .|+++.|+. +|.      +++
T Consensus        24 ~d~~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~-~~dna~~~~~-~G~l~~Lv~~lL~------s~~   95 (296)
T 1xqr_A           24 RGEVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCE-NMDNAADFCQ-LSGMHLLVGRYLE------AGA   95 (296)
T ss_dssp             HHHHHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHT-SHHHHHHHHH-TTHHHHHHHTTTT------CSS
T ss_pred             CCHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHh-ChhhHHHHHH-cCCHHHHHHHHHc------CCC
Confidence            34446777788888542             2468889999999995 6778889999 999999999 999      778


Q ss_pred             HHHHHHHHHHHHHhccccc-hhhhhhccCCcHHHHHHHHhcC-CHHHHHHHHHHHHHhcCCC-CchhhhhccCChHHHHH
Q 020640           93 PNLQEDVITTLLNLSIHDN-NKKLVAETPMVIPLLMDALRSG-TIETRSNAAAALFTLSALD-SNKEVIGKSGALKPLID  169 (323)
Q Consensus        93 ~~~~~~a~~~L~~ls~~~~-~~~~i~~~~g~i~~Lv~ll~~~-~~~~~~~a~~~L~~L~~~~-~~~~~i~~~g~i~~Lv~  169 (323)
                      +.++..|+++|.+++.+++ .+..+++.| +++.|+.+|+++ +..+++.|+++|.+++.+. +....+.+.|+++.|+.
T Consensus        96 ~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g-~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~  174 (296)
T 1xqr_A           96 AGLRWRAAQLIGTCSQNVAAIQEQVLGLG-ALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMR  174 (296)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHTT-HHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHCC-CHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHH
Confidence            9999999999999998766 677788765 699999999964 8899999999999998754 44667788999999999


Q ss_pred             HhhhcCHhHHHHHHHHHHHhccCC-chhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcC-HHHHHHHHhcC-CH
Q 020640          170 LLDEGHQSAMKDVASAIFNLCITH-ENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTN-HRAVEEIGDLG-GV  244 (323)
Q Consensus       170 lL~~~~~~~~~~al~aL~~L~~~~-~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~-~~~~~~i~~~g-~i  244 (323)
                      +|++++..++..|+++|.+|+.++ +.+..+++.|+++.|+.+|.++  .+++.++++|.+|+.. +..+..+...+ .+
T Consensus       175 lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l  254 (296)
T 1xqr_A          175 AMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGL  254 (296)
T ss_dssp             HHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCH
T ss_pred             HHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHH
Confidence            999999999999999999998865 5778889999999999999976  7899999999999996 44444443221 12


Q ss_pred             HHH----HHHHhccC-ChhHHHHHHHHHHHhcc
Q 020640          245 SCM----LRIIREST-CDRNKENCIAILHTICL  272 (323)
Q Consensus       245 ~~L----v~ll~~~~-~~~~~~~a~~~L~~L~~  272 (323)
                      ..+    .+-++..+ +....+.|..++..+..
T Consensus       255 ~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~f~  287 (296)
T 1xqr_A          255 EELLRHRCQLLQQHEEYQEELEFCEKLLQTCFS  287 (296)
T ss_dssp             HHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHccchHHHHHHHHHHHHHHHHHcC
Confidence            111    22222111 24455566666665553

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.75  E-value=1.9e-16  Score=150.35  Aligned_cols=280  Identities=14%  Similarity=0.179  Sum_probs=222.9

Q ss_pred             hhhhhHHHHHHHHhc--CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHH
Q 020640           27 EADRDHFLSLLKKMS--ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLL  104 (323)
Q Consensus        27 ~~~~~~i~~Lv~~l~--~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~  104 (323)
                      ++..+.|+.|++.++  .-.+.|+.|+..|+.+++   +++..+..  ++++.|++.|+..    .+|.++...++.+|.
T Consensus        17 qs~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk---~y~~~Vg~--~~l~~li~~L~~d----~~D~e~v~~~LetL~   87 (651)
T 3grl_A           17 HTEAETIQKLCDRVASSTLLDDRRNAVRALKSLSK---KYRLEVGI--QAMEHLIHVLQTD----RSDSEIIGYALDTLY   87 (651)
T ss_dssp             -CHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTT---TTTTHHHH--HTHHHHHHHHHSC----TTCHHHHHHHHHHHH
T ss_pred             CChhhHHHHHHHHHhhccchhHHHHHHHHHHHHHH---HhHHHhhh--hhHHHHHHHHhcc----cccHHHHHHHHHHHH
Confidence            345589999999996  348899999999999985   35666666  7899999999865    578999999999998


Q ss_pred             Hhccccch------------------hhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCC--chhhhhc-cCC
Q 020640          105 NLSIHDNN------------------KKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDS--NKEVIGK-SGA  163 (323)
Q Consensus       105 ~ls~~~~~------------------~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~--~~~~i~~-~g~  163 (323)
                      ++...++.                  ...+.+..+.++.|+.+|++.+..++..++..|..|+.+..  .+..+.. .++
T Consensus        88 ~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~g  167 (651)
T 3grl_A           88 NIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMG  167 (651)
T ss_dssp             HHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTH
T ss_pred             HHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCccc
Confidence            86443321                  12344445569999999999999999999999999986543  5677775 799


Q ss_pred             hHHHHHHhhhcCHhHHHHHHHHHHHhccCCchhHHHHhh-CchHHHHHHhhcC------chHHHHHHHHHHHhcC-HHHH
Q 020640          164 LKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRD-GGVSVILKKIMDG------VHVDELLAILAMLSTN-HRAV  235 (323)
Q Consensus       164 i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~i~~~-g~v~~Lv~ll~~~------~~~~~a~~~L~~l~~~-~~~~  235 (323)
                      ++.|+.+|++..+.++..++..|.+|+.++.+.++++.. |+++.|+.++..+      .+...|+.+|.||..+ +.++
T Consensus       168 i~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ  247 (651)
T 3grl_A          168 VSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQ  247 (651)
T ss_dssp             HHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHH
Confidence            999999999999999999999999999999998888876 9999999999853      4688999999999995 7899


Q ss_pred             HHHHhcCCHHHHHHHHhccCCh-----hHHH---HHHHHHHHhcccCh-----HhHHHHHhhcccHHHHHHHhhcC--CH
Q 020640          236 EEIGDLGGVSCMLRIIRESTCD-----RNKE---NCIAILHTICLSDR-----TKWKAMREEESTHGTISKLAQDG--TA  300 (323)
Q Consensus       236 ~~i~~~g~i~~Lv~ll~~~~~~-----~~~~---~a~~~L~~L~~~~~-----~~~~~~~~~~~~i~~L~~ll~~~--~~  300 (323)
                      ..|.+.|+++.|..+++.+...     ....   .+..++..|+..+.     ...+..+.+.|++..|++++.+.  ..
T Consensus       248 ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~  327 (651)
T 3grl_A          248 NFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPA  327 (651)
T ss_dssp             HHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCH
T ss_pred             HHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCH
Confidence            9999999999999999753311     1122   26666777766521     12344556799999999998876  67


Q ss_pred             HHHHHHHHHHHHHhc
Q 020640          301 RAKRKATGILERLKR  315 (323)
Q Consensus       301 ~~~~~A~~~L~~l~~  315 (323)
                      .++..|..++..+.+
T Consensus       328 ~i~~~Al~tla~~ir  342 (651)
T 3grl_A          328 DILTETINTVSEVIR  342 (651)
T ss_dssp             HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHh
Confidence            888888888877664

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.61  E-value=3e-13  Score=128.48  Aligned_cols=280  Identities=13%  Similarity=0.110  Sum_probs=216.9

Q ss_pred             hhhHHHHHHHHhc---CCchhHHHHHHHHHHHhccChh-----------------hHHHHhhhcCCHHHHHHhhcccccC
Q 020640           29 DRDHFLSLLKKMS---ATLPDQTEAAKELRLLTKRMPS-----------------FRALFGESHDAIPQLLSPLSESKCE   88 (323)
Q Consensus        29 ~~~~i~~Lv~~l~---~~~~~~~~a~~~L~~l~~~~~~-----------------~~~~i~~~~g~i~~Lv~lL~~~~~~   88 (323)
                      ...+++.|+..|+   +|.++...++.+|.++...+++                 +...|.+..+.|+.|+++|+     
T Consensus        58 g~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~-----  132 (651)
T 3grl_A           58 GIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLE-----  132 (651)
T ss_dssp             HHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTT-----
T ss_pred             hhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhc-----
Confidence            3467899999995   4567777899999887754432                 22345443788999999999     


Q ss_pred             CCCCHHHHHHHHHHHHHhccccc--hhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhc-cCChH
Q 020640           89 NGINPNLQEDVITTLLNLSIHDN--NKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGK-SGALK  165 (323)
Q Consensus        89 ~~~~~~~~~~a~~~L~~ls~~~~--~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~-~g~i~  165 (323)
                       +++..++.+++..|..|+....  .+..|...++.++.|+.+|.+.++.++..++..|.+|+.+..+..+++. +|+++
T Consensus       133 -~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe  211 (651)
T 3grl_A          133 -EFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFE  211 (651)
T ss_dssp             -CCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHH
T ss_pred             -CccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHH
Confidence             7799999999999999876554  6888887766799999999999999999999999999988888777777 89999


Q ss_pred             HHHHHhhhcC----HhHHHHHHHHHHHhccCCc-hhHHHHhhCchHHHHHHhhcC-c-------hHHH---HHHHHHHHh
Q 020640          166 PLIDLLDEGH----QSAMKDVASAIFNLCITHE-NKARAVRDGGVSVILKKIMDG-V-------HVDE---LLAILAMLS  229 (323)
Q Consensus       166 ~Lv~lL~~~~----~~~~~~al~aL~~L~~~~~-~~~~i~~~g~v~~Lv~ll~~~-~-------~~~~---a~~~L~~l~  229 (323)
                      .|+.++..+.    ..+...|+.+|.||..++. |...+.+.|+++.|..+++.+ .       ...+   ++.++.-+.
T Consensus       212 ~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv  291 (651)
T 3grl_A          212 RLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLV  291 (651)
T ss_dssp             HHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHh
Confidence            9999999753    4788999999999999884 777788889999999999744 1       1122   556666665


Q ss_pred             cC-------HHHHHHHHhcCCHHHHHHHHhccC-ChhHHHHHHHHHHHhcccChHhHHHHHhh--------cccHHHHHH
Q 020640          230 TN-------HRAVEEIGDLGGVSCMLRIIREST-CDRNKENCIAILHTICLSDRTKWKAMREE--------ESTHGTISK  293 (323)
Q Consensus       230 ~~-------~~~~~~i~~~g~i~~Lv~ll~~~~-~~~~~~~a~~~L~~L~~~~~~~~~~~~~~--------~~~i~~L~~  293 (323)
                      ..       +.++..+.+.|+++.|++++..+. ...++..|+.++..+..+++.....+...        ...+..|+.
T Consensus       292 ~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~  371 (651)
T 3grl_A          292 SPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMS  371 (651)
T ss_dssp             CTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHH
Confidence            53       367889999999999999998542 37789999999999999997754444321        123333444


Q ss_pred             HhhcC-CHHHHHHHHHHHHHHh
Q 020640          294 LAQDG-TARAKRKATGILERLK  314 (323)
Q Consensus       294 ll~~~-~~~~~~~A~~~L~~l~  314 (323)
                      ++.+. ...++..|..+++.+.
T Consensus       372 ~~~~~~~~~lR~Aa~~cl~ay~  393 (651)
T 3grl_A          372 MVNERQPFVLRCAVLYCFQCFL  393 (651)
T ss_dssp             HTCTTSCHHHHHHHHHHHHHHH
T ss_pred             HhcccccHHHHHHHHHHHHHHH
Confidence            45443 5777888888877766

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.41  E-value=2.6e-11  Score=101.52  Aligned_cols=191  Identities=19%  Similarity=0.198  Sum_probs=153.9

Q ss_pred             cCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC
Q 020640           72 HDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSAL  151 (323)
Q Consensus        72 ~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~  151 (323)
                      .+.++.|+..|+      ++++.++..|+..|..+..           ...++.|+.+++++++.++..++.+|..+.. 
T Consensus        18 ~~~~~~L~~~L~------~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-   79 (211)
T 3ltm_A           18 PEKVEMYIKNLQ------DDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD-   79 (211)
T ss_dssp             GGGHHHHHHHTT------CSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC-
T ss_pred             HhHHHHHHHHHc------CCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-
Confidence            567999999999      7799999999999998743           2368999999999999999999999988852 


Q ss_pred             CCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHh
Q 020640          152 DSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLS  229 (323)
Q Consensus       152 ~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~  229 (323)
                               .+.++.|+++|.++++.++..++.+|..+..          .+.++.|+.++.++  .++..++.+|..+.
T Consensus        80 ---------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~  140 (211)
T 3ltm_A           80 ---------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIG  140 (211)
T ss_dssp             ---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred             ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence                     3578999999999999999999999998743          35788999999877  57899999998884


Q ss_pred             cCHHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHH
Q 020640          230 TNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGI  309 (323)
Q Consensus       230 ~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~  309 (323)
                      .          ...++.|..++++.+ +.++..|+.+|..+..            ...++.|.+++.++++.++..|..+
T Consensus       141 ~----------~~~~~~L~~~l~d~~-~~vr~~a~~aL~~~~~------------~~~~~~L~~~l~d~~~~vr~~A~~a  197 (211)
T 3ltm_A          141 D----------ERAVEPLIKALKDED-GWVRQSAADALGEIGG------------ERVRAAMEKLAETGTGFARKVAVNY  197 (211)
T ss_dssp             C----------GGGHHHHHHHTTCSS-HHHHHHHHHHHHHHCS------------HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred             C----------HHHHHHHHHHHcCCC-HHHHHHHHHHHHHhCc------------hhHHHHHHHHHhCCCHHHHHHHHHH
Confidence            3          246889999998654 8999999999999843            2456778889999999999999999


Q ss_pred             HHHHhcchhhccC
Q 020640          310 LERLKRTVNLTHT  322 (323)
Q Consensus       310 L~~l~~~~~~~~~  322 (323)
                      |..+.....-.++
T Consensus       198 L~~~~~~~~~~~~  210 (211)
T 3ltm_A          198 LETHKSFNHHHHH  210 (211)
T ss_dssp             HHC----------
T ss_pred             HHhcCCCCCCCCC
Confidence            9999887665544

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.38  E-value=3.5e-11  Score=105.26  Aligned_cols=226  Identities=11%  Similarity=0.027  Sum_probs=155.1

Q ss_pred             hhhhHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHh
Q 020640           28 ADRDHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNL  106 (323)
Q Consensus        28 ~~~~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~l  106 (323)
                      .....++.|++.|. +++.+|..|+..|.++..            .+.++.|+.+|.      ++++.++..|+.+|..+
T Consensus        20 ~~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~------------~~~~~~L~~~l~------d~~~~vR~~A~~aL~~l   81 (280)
T 1oyz_A           20 CKKLNDDELFRLLDDHNSLKRISSARVLQLRGG------------QDAVRLAIEFCS------DKNYIRRDIGAFILGQI   81 (280)
T ss_dssp             HHTSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------HHHHHHHHHHHT------CSSHHHHHHHHHHHHHS
T ss_pred             HHHhhHHHHHHHHHcCCHHHHHHHHHHHHccCC------------chHHHHHHHHHc------CCCHHHHHHHHHHHHHh
Confidence            34568899999996 668899999999998761            346788999998      77899999999999888


Q ss_pred             ccccchhhhhhccCCcHHHHH-HHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHH
Q 020640          107 SIHDNNKKLVAETPMVIPLLM-DALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASA  185 (323)
Q Consensus       107 s~~~~~~~~i~~~~g~i~~Lv-~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~a  185 (323)
                      ........      .+++.|. .++.++++.++..++++|..+......    ....+++.|+.++.++++.++..++.+
T Consensus        82 ~~~~~~~~------~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~----~~~~~~~~L~~~l~d~~~~vR~~a~~a  151 (280)
T 1oyz_A           82 KICKKCED------NVFNILNNMALNDKSACVRATAIESTAQRCKKNPI----YSPKIVEQSQITAFDKSTNVRRATAFA  151 (280)
T ss_dssp             CCCTTTHH------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred             ccccccch------HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCc----ccHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence            64322111      1234444 245678899999999999998632211    123467888888888888999999998


Q ss_pred             HHHhccCCchhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHhccCChhHHHHH
Q 020640          186 IFNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENC  263 (323)
Q Consensus       186 L~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a  263 (323)
                      |.++..          .++++.|+.+++++  .++..++.+|..+....        ..+++.|+.++++++ +.++..|
T Consensus       152 L~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~--------~~~~~~L~~~l~d~~-~~vR~~A  212 (280)
T 1oyz_A          152 ISVIND----------KATIPLLINLLKDPNGDVRNWAAFAININKYDN--------SDIRDCFVEMLQDKN-EEVRIEA  212 (280)
T ss_dssp             HHTC-------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCC--------HHHHHHHHHHTTCSC-HHHHHHH
T ss_pred             HHhcCC----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCc--------HHHHHHHHHHhcCCC-HHHHHHH
Confidence            887643          24788888888876  57888888888774321        124567777777544 7788888


Q ss_pred             HHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHh
Q 020640          264 IAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLK  314 (323)
Q Consensus       264 ~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~  314 (323)
                      +.+|..+..            ...++.|++++.+++  ++..|..+|..+.
T Consensus       213 ~~aL~~~~~------------~~~~~~L~~~l~d~~--vr~~a~~aL~~i~  249 (280)
T 1oyz_A          213 IIGLSYRKD------------KRVLSVLCDELKKNT--VYDDIIEAAGELG  249 (280)
T ss_dssp             HHHHHHTTC------------GGGHHHHHHHHTSSS--CCHHHHHHHHHHC
T ss_pred             HHHHHHhCC------------HhhHHHHHHHhcCcc--HHHHHHHHHHhcC
Confidence            888877652            134455555554433  5555555555544

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.32  E-value=2e-10  Score=96.04  Aligned_cols=187  Identities=17%  Similarity=0.137  Sum_probs=151.7

Q ss_pred             hhHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhcc
Q 020640           30 RDHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSI  108 (323)
Q Consensus        30 ~~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~  108 (323)
                      .+.++.|++.|. .++.+|..|+..|..+..            ..+++.|+++|.      ++++.++..++.+|..+..
T Consensus        18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~------------~~~~~~L~~~l~------~~~~~vr~~a~~aL~~~~~   79 (211)
T 3ltm_A           18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD------------ERAVEPLIKALK------DEDAWVRRAAADALGQIGD   79 (211)
T ss_dssp             GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------GGGHHHHHHHTT------CSCHHHHHHHHHHHHHHCC
T ss_pred             HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC------------ccHHHHHHHHHc------CCCHHHHHHHHHHHHhhCC
Confidence            368999999996 678899999999987652            357899999999      7789999999999998752


Q ss_pred             ccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHH
Q 020640          109 HDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFN  188 (323)
Q Consensus       109 ~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~  188 (323)
                                 .+.++.|+.+++++++.++..++.+|..+..          ...++.|++++.++++.++..++.+|..
T Consensus        80 -----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~  138 (211)
T 3ltm_A           80 -----------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGE  138 (211)
T ss_dssp             -----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred             -----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence                       2368899999999999999999999998843          3478999999999999999999999999


Q ss_pred             hccCCchhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHH
Q 020640          189 LCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAI  266 (323)
Q Consensus       189 L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~  266 (323)
                      +..          ...++.|..++.++  .++..++.+|..+..          ..+++.|..++++++ +.++..|..+
T Consensus       139 ~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~-~~vr~~A~~a  197 (211)
T 3ltm_A          139 IGD----------ERAVEPLIKALKDEDGWVRQSAADALGEIGG----------ERVRAAMEKLAETGT-GFARKVAVNY  197 (211)
T ss_dssp             HCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHCC-HHHHHHHHHH
T ss_pred             cCC----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhCCC-HHHHHHHHHH
Confidence            842          24788899999876  678999999998853          235778888888655 9999999999


Q ss_pred             HHHhcccChH
Q 020640          267 LHTICLSDRT  276 (323)
Q Consensus       267 L~~L~~~~~~  276 (323)
                      |..+.....+
T Consensus       198 L~~~~~~~~~  207 (211)
T 3ltm_A          198 LETHKSFNHH  207 (211)
T ss_dssp             HHC-------
T ss_pred             HHhcCCCCCC
Confidence            9998876643

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.32  E-value=2e-10  Score=95.31  Aligned_cols=184  Identities=19%  Similarity=0.205  Sum_probs=153.5

Q ss_pred             cCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC
Q 020640           72 HDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSAL  151 (323)
Q Consensus        72 ~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~  151 (323)
                      .+..+.+++.|.      ++++.++..|+..|..+..           ...++.|+.+++++++.++..++.+|..+.. 
T Consensus        13 ~~~~~~~i~~L~------~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~-   74 (201)
T 3ltj_A           13 PEKVEMYIKNLQ------DDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD-   74 (201)
T ss_dssp             HHHHHHHHHHTT------CSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-
T ss_pred             CcchHHHHHHhc------CCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-
Confidence            456788999999      8899999999999997753           1358899999999999999999999988743 


Q ss_pred             CCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHh
Q 020640          152 DSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLS  229 (323)
Q Consensus       152 ~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~  229 (323)
                               ..+++.|+++|.++++.++..|+.+|..+..          ...++.|+.++.++  .++..++.+|..+.
T Consensus        75 ---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~  135 (201)
T 3ltj_A           75 ---------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIG  135 (201)
T ss_dssp             ---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHT
T ss_pred             ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence                     3578999999999999999999999998743          24788899999876  57899999998875


Q ss_pred             cCHHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHH
Q 020640          230 TNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGI  309 (323)
Q Consensus       230 ~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~  309 (323)
                      .          .+.++.|..++.+.+ +.++..|+.+|..+..            ...++.|.+++.++++.++..|..+
T Consensus       136 ~----------~~~~~~L~~~l~d~~-~~vr~~A~~aL~~~~~------------~~~~~~L~~~l~d~~~~vr~~A~~a  192 (201)
T 3ltj_A          136 D----------ERAVEPLIKALKDED-GWVRQSAADALGEIGG------------ERVRAAMEKLAETGTGFARKVAVNY  192 (201)
T ss_dssp             C----------GGGHHHHHHHTTCSS-HHHHHHHHHHHHHHCS------------HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred             C----------HHHHHHHHHHHcCCC-HHHHHHHHHHHHHhCc------------hhHHHHHHHHHhCCCHHHHHHHHHH
Confidence            3          357889999998654 8899999999999832            2367788888999999999999999


Q ss_pred             HHHHhc
Q 020640          310 LERLKR  315 (323)
Q Consensus       310 L~~l~~  315 (323)
                      |..+..
T Consensus       193 L~~l~~  198 (201)
T 3ltj_A          193 LETHKS  198 (201)
T ss_dssp             HHHCC-
T ss_pred             HHHHHh
Confidence            988764

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.31  E-value=2.9e-10  Score=94.35  Aligned_cols=185  Identities=17%  Similarity=0.149  Sum_probs=153.0

Q ss_pred             hhhhHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHh
Q 020640           28 ADRDHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNL  106 (323)
Q Consensus        28 ~~~~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~l  106 (323)
                      ...+..+.+++.|+ .++.+|..|+..|..+..            .+.++.|+++|.      ++++.++..|+.+|..+
T Consensus        11 ~~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~------------~~~~~~L~~~l~------~~~~~vr~~a~~~L~~~   72 (201)
T 3ltj_A           11 TDPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD------------ERAVEPLIKALK------DEDAWVRRAAADALGQI   72 (201)
T ss_dssp             CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC------------GGGHHHHHHHTT------CSSHHHHHHHHHHHHHH
T ss_pred             cCCcchHHHHHHhcCCCHHHHHHHHHHHHhcCC------------hhHHHHHHHHHc------CCCHHHHHHHHHHHHhh
Confidence            44478999999996 679999999999987652            356889999998      77899999999999887


Q ss_pred             ccccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHH
Q 020640          107 SIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAI  186 (323)
Q Consensus       107 s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL  186 (323)
                      ..           ...++.|+.++.++++.++..++++|..+..          ..+++.|++++.++++.++..++.+|
T Consensus        73 ~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL  131 (201)
T 3ltj_A           73 GD-----------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFAL  131 (201)
T ss_dssp             CC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred             CC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence            42           1358899999999999999999999998743          34789999999999999999999999


Q ss_pred             HHhccCCchhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHhccCChhHHHHHH
Q 020640          187 FNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCI  264 (323)
Q Consensus       187 ~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~  264 (323)
                      ..+..          .+.++.|..++.++  .++..++.+|..+..          ..+++.|..++.+.+ +.++..|.
T Consensus       132 ~~~~~----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~----------~~~~~~L~~~l~d~~-~~vr~~A~  190 (201)
T 3ltj_A          132 GEIGD----------ERAVEPLIKALKDEDGWVRQSAADALGEIGG----------ERVRAAMEKLAETGT-GFARKVAV  190 (201)
T ss_dssp             HHHTC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHCC-HHHHHHHH
T ss_pred             HHhCC----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhCCC-HHHHHHHH
Confidence            98742          35788999999876  678999999998832          235788888888655 89999999


Q ss_pred             HHHHHhcc
Q 020640          265 AILHTICL  272 (323)
Q Consensus       265 ~~L~~L~~  272 (323)
                      .+|..+..
T Consensus       191 ~aL~~l~~  198 (201)
T 3ltj_A          191 NYLETHKS  198 (201)
T ss_dssp             HHHHHCC-
T ss_pred             HHHHHHHh
Confidence            99988653

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=99.30  E-value=2.5e-11  Score=122.40  Aligned_cols=271  Identities=10%  Similarity=0.046  Sum_probs=186.9

Q ss_pred             hHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccc
Q 020640           31 DHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIH  109 (323)
Q Consensus        31 ~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~  109 (323)
                      ..++.+++.++ .+..+|..|+.+|..+....+..  ......+.++.++.++.      ++++.++..++.+|..++..
T Consensus       174 ~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~--~~~~~~~~l~~l~~~~~------d~~~~vr~~a~~~L~~l~~~  245 (852)
T 4fdd_A          174 IMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQA--LMLHIDSFIENLFALAG------DEEPEVRKNVCRALVMLLEV  245 (852)
T ss_dssp             HHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHH--HHTSHHHHHHHHHHHHT------CCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHH--HHHHHHHHHHHHHHHcC------CCCHHHHHHHHHHHHHHHHh
Confidence            45666666665 55888999999999888643321  11111246777777777      77899999999999998764


Q ss_pred             cchh-hhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhc--cCChHHHHHHh-----------hh--
Q 020640          110 DNNK-KLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGK--SGALKPLIDLL-----------DE--  173 (323)
Q Consensus       110 ~~~~-~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~--~g~i~~Lv~lL-----------~~--  173 (323)
                      .... .....  ++++.++..+++.++.++..++.++..++.....+..+..  ...++.+++.+           .+  
T Consensus       246 ~~~~~~~~l~--~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~  323 (852)
T 4fdd_A          246 RMDRLLPHMH--NIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVE  323 (852)
T ss_dssp             CHHHHGGGHH--HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC---
T ss_pred             CHHHHHHHHH--HHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcc
Confidence            4321 11122  3678888888888999999999999999876543332221  23566666665           22  


Q ss_pred             ---------cCHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcCHHHHHHHHhcC
Q 020640          174 ---------GHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDLG  242 (323)
Q Consensus       174 ---------~~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~~~~~~~i~~~g  242 (323)
                               .+..++..+..+|..|+.....  .++. ..++.+..++.+.  ..++.|+.+|.+++........-.-.+
T Consensus       324 ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~--~~~~-~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~  400 (852)
T 4fdd_A          324 GGSGGDDTISDWNLRKCSAAALDVLANVYRD--ELLP-HILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPE  400 (852)
T ss_dssp             ---------CCCCHHHHHHHHHHHHHHHHGG--GGHH-HHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHH
T ss_pred             cccccccccccchHHHHHHHHHHHHHHhccH--HHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence                     1224688889999888764331  1222 2566777777765  679999999999998643211112235


Q ss_pred             CHHHHHHHHhccCChhHHHHHHHHHHHhcccChHh-HHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhcch
Q 020640          243 GVSCMLRIIRESTCDRNKENCIAILHTICLSDRTK-WKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTV  317 (323)
Q Consensus       243 ~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~-~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~  317 (323)
                      +++.++..+++.+ +.++..|++++.+++..-+.. ....+  ...++.|++.+.++++.++..|.++|.++++..
T Consensus       401 ~l~~l~~~l~d~~-~~Vr~~a~~~l~~l~~~~~~~~~~~~~--~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~  473 (852)
T 4fdd_A          401 LIPHLIQCLSDKK-ALVRSITCWTLSRYAHWVVSQPPDTYL--KPLMTELLKRILDSNKRVQEAACSAFATLEEEA  473 (852)
T ss_dssp             HHHHHHHHTTCSS-HHHHHHHHHHHHHTHHHHHHSCTTTTH--HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHhccchHHHHH--HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHh
Confidence            6888999998655 999999999999998753221 11222  367888999998899999999999999998643

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=99.29  E-value=8.4e-11  Score=118.59  Aligned_cols=271  Identities=14%  Similarity=0.102  Sum_probs=190.4

Q ss_pred             hHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhh------hcCCHHHHHHhhcccccCCCCCHHHHHHHHHHH
Q 020640           31 DHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGE------SHDAIPQLLSPLSESKCENGINPNLQEDVITTL  103 (323)
Q Consensus        31 ~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~------~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L  103 (323)
                      +.++.|++.+. .+...+..|+.+|..++...+..   +..      ....++.+++.++      ++++.++..|+.+|
T Consensus       128 ~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~---~~~~~~~~~~~~il~~l~~~l~------~~~~~vR~~A~~aL  198 (852)
T 4fdd_A          128 DLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEI---LDSDVLDRPLNIMIPKFLQFFK------HSSPKIRSHAVACV  198 (852)
T ss_dssp             THHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTH---HHHCSSSSCHHHHHHHHTTTTT------CSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHH---hchhhhcchHHHHHHHHHHHhc------CCCHHHHHHHHHHH
Confidence            57888888886 56788999999999999654332   211      0235666777776      77899999999999


Q ss_pred             HHhccccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHH
Q 020640          104 LNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVA  183 (323)
Q Consensus       104 ~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al  183 (323)
                      .++....... .......+++.++..+.+++++++..++++|..++........-.-.++++.+++.+.+.++.++..|+
T Consensus       199 ~~~~~~~~~~-~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~  277 (852)
T 4fdd_A          199 NQFIISRTQA-LMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEAC  277 (852)
T ss_dssp             HTTTTTTCHH-HHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHH
T ss_pred             HHHHhcccHH-HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHH
Confidence            9876543321 111112367788888889999999999999999985432111101134778888888888899999999


Q ss_pred             HHHHHhccCCchhHHHHh--hCchHHHHHHh-----------hc-----------C--chHHHHHHHHHHHhcCHHHHHH
Q 020640          184 SAIFNLCITHENKARAVR--DGGVSVILKKI-----------MD-----------G--VHVDELLAILAMLSTNHRAVEE  237 (323)
Q Consensus       184 ~aL~~L~~~~~~~~~i~~--~g~v~~Lv~ll-----------~~-----------~--~~~~~a~~~L~~l~~~~~~~~~  237 (323)
                      .++.+++.....+..+-.  ...++.++..+           .+           .  .++..+..+|..++....  ..
T Consensus       278 e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~--~~  355 (852)
T 4fdd_A          278 EFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYR--DE  355 (852)
T ss_dssp             HHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHG--GG
T ss_pred             HHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhcc--HH
Confidence            999999876543332211  13566676666           22           1  357778888888886321  11


Q ss_pred             HHhcCCHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhcch
Q 020640          238 IGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTV  317 (323)
Q Consensus       238 i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~  317 (323)
                      +.. .+++.+...+.+. +.++++.|+.+|..++..........+  ...++.|+..+.+.++.++..|+++|.+++...
T Consensus       356 ~~~-~l~~~l~~~l~~~-~~~~R~aa~~alg~i~~~~~~~~~~~l--~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~  431 (852)
T 4fdd_A          356 LLP-HILPLLKELLFHH-EWVVKESGILVLGAIAEGCMQGMIPYL--PELIPHLIQCLSDKKALVRSITCWTLSRYAHWV  431 (852)
T ss_dssp             GHH-HHHHHHHHHHTCS-SHHHHHHHHHHHHHTTTTTHHHHGGGH--HHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHH
T ss_pred             HHH-HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhcchHHHHHHH--HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence            221 3467777777755 489999999999999987755333332  478899999999999999999999999998743

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.26  E-value=9.6e-10  Score=96.02  Aligned_cols=200  Identities=9%  Similarity=0.019  Sum_probs=153.7

Q ss_pred             HhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHH
Q 020640           68 FGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFT  147 (323)
Q Consensus        68 i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~  147 (323)
                      +.+ .+.++.|+..|.      ++++.++..|+.+|.++..           .++++.|+.+++++++.++..++++|..
T Consensus        19 ~~~-~~~i~~L~~~L~------~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~   80 (280)
T 1oyz_A           19 QCK-KLNDDELFRLLD------DHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQ   80 (280)
T ss_dssp             HHH-TSCHHHHHHHTT------CSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred             HHH-HhhHHHHHHHHH------cCCHHHHHHHHHHHHccCC-----------chHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            445 678999999998      7799999999999998862           2368889999999999999999999999


Q ss_pred             hcCCCCchhhhhccCChHHHHH-HhhhcCHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcC--chHHHHHHH
Q 020640          148 LSALDSNKEVIGKSGALKPLID-LLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAI  224 (323)
Q Consensus       148 L~~~~~~~~~i~~~g~i~~Lv~-lL~~~~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~  224 (323)
                      +...+....     ..++.|.+ ++.++++.++..++.+|.++...+...    ....++.|+.++.++  .++..++.+
T Consensus        81 l~~~~~~~~-----~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~----~~~~~~~L~~~l~d~~~~vR~~a~~a  151 (280)
T 1oyz_A           81 IKICKKCED-----NVFNILNNMALNDKSACVRATAIESTAQRCKKNPIY----SPKIVEQSQITAFDKSTNVRRATAFA  151 (280)
T ss_dssp             SCCCTTTHH-----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGG----HHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred             hccccccch-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcc----cHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence            864332111     12334442 346678999999999999986433211    123678888989877  578888888


Q ss_pred             HHHHhcCHHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHH
Q 020640          225 LAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKR  304 (323)
Q Consensus       225 L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~  304 (323)
                      |.++..          .++++.|+.++++.+ +.++..|+.+|..+....+          ..++.|.+++.++++.++.
T Consensus       152 L~~~~~----------~~~~~~L~~~l~d~~-~~vr~~a~~aL~~~~~~~~----------~~~~~L~~~l~d~~~~vR~  210 (280)
T 1oyz_A          152 ISVIND----------KATIPLLINLLKDPN-GDVRNWAAFAININKYDNS----------DIRDCFVEMLQDKNEEVRI  210 (280)
T ss_dssp             HHTC-------------CCHHHHHHHHTCSS-HHHHHHHHHHHHHHTCCCH----------HHHHHHHHHTTCSCHHHHH
T ss_pred             HHhcCC----------HHHHHHHHHHHcCCC-HHHHHHHHHHHHhhccCcH----------HHHHHHHHHhcCCCHHHHH
Confidence            887643          357999999999654 8899999999999854432          3567888999999999999


Q ss_pred             HHHHHHHHHhc
Q 020640          305 KATGILERLKR  315 (323)
Q Consensus       305 ~A~~~L~~l~~  315 (323)
                      .|.++|..+..
T Consensus       211 ~A~~aL~~~~~  221 (280)
T 1oyz_A          211 EAIIGLSYRKD  221 (280)
T ss_dssp             HHHHHHHHTTC
T ss_pred             HHHHHHHHhCC
Confidence            99999998874

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=99.16  E-value=2.3e-10  Score=112.62  Aligned_cols=191  Identities=15%  Similarity=0.181  Sum_probs=147.5

Q ss_pred             CCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC
Q 020640           73 DAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALD  152 (323)
Q Consensus        73 g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~  152 (323)
                      ..|.++++.|+      +.++..+..|+.+|.+|+.+...+..+...+++.+.+..+|.+++.+++..|+++|+||+...
T Consensus        34 ~~i~Pll~~L~------S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~  107 (684)
T 4gmo_A           34 DKILPVLKDLK------SPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEE  107 (684)
T ss_dssp             HTTHHHHHHHS------SSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHS
T ss_pred             hhHHHHHHHcC------CCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhc
Confidence            35666778888      778999999999999999877788888887654444556788899999999999999998653


Q ss_pred             --CchhhhhccCChHHHHHHhhhcC---------------------HhHHHHHHHHHHHhccCCch-hHHHHhhCchHHH
Q 020640          153 --SNKEVIGKSGALKPLIDLLDEGH---------------------QSAMKDVASAIFNLCITHEN-KARAVRDGGVSVI  208 (323)
Q Consensus       153 --~~~~~i~~~g~i~~Lv~lL~~~~---------------------~~~~~~al~aL~~L~~~~~~-~~~i~~~g~v~~L  208 (323)
                        +.+..+.+.|++++|..+++...                     ..+...++.+|++||.+++. ...+...|+++.|
T Consensus       108 g~d~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l  187 (684)
T 4gmo_A          108 EADFCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRL  187 (684)
T ss_dssp             CHHHHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHH
T ss_pred             CchHHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHH
Confidence              56788899999999999986410                     12455788999999987754 4466777999999


Q ss_pred             HHHhhcC-----chHHHHHHHHHHHhcC-HHHHHHHHhcCC---HHHHHHHHhccCChhHHHHHHHHHHHhc
Q 020640          209 LKKIMDG-----VHVDELLAILAMLSTN-HRAVEEIGDLGG---VSCMLRIIRESTCDRNKENCIAILHTIC  271 (323)
Q Consensus       209 v~ll~~~-----~~~~~a~~~L~~l~~~-~~~~~~i~~~g~---i~~Lv~ll~~~~~~~~~~~a~~~L~~L~  271 (323)
                      +..|.+.     +++..++.+|..++.+ ++....+.+.|.   ...+..+.+ +. +..+..++++|.|+.
T Consensus       188 ~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~-~~-~~~~~la~giL~Ni~  257 (684)
T 4gmo_A          188 LFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLAT-GT-DPRAVMACGVLHNVF  257 (684)
T ss_dssp             HHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHH-SS-CTTHHHHHHHHHHHH
T ss_pred             HHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhc-CC-cHHHHHHHHHHHhHh
Confidence            9988532     5788999999999995 677777777764   333333334 33 666888999999974

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=99.14  E-value=5.2e-10  Score=110.11  Aligned_cols=191  Identities=15%  Similarity=0.172  Sum_probs=149.5

Q ss_pred             cHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHH-HhhhcCHhHHHHHHHHHHHhccCC--chhHH
Q 020640          122 VIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLID-LLDEGHQSAMKDVASAIFNLCITH--ENKAR  198 (323)
Q Consensus       122 ~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~-lL~~~~~~~~~~al~aL~~L~~~~--~~~~~  198 (323)
                      +.| ++..|++++++.+..|+++|.+|+.+++++..+...|++..++. +|.+.+..++..|+++|+||+...  +.+..
T Consensus        36 i~P-ll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~  114 (684)
T 4gmo_A           36 ILP-VLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVH  114 (684)
T ss_dssp             THH-HHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred             HHH-HHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHH
Confidence            455 66789999999999999999999988788888888888887655 688889999999999999998754  67888


Q ss_pred             HHhhCchHHHHHHhhcC-----------------------chHHHHHHHHHHHhc-CHHHHHHHHhcCCHHHHHHHHhcc
Q 020640          199 AVRDGGVSVILKKIMDG-----------------------VHVDELLAILAMLST-NHRAVEEIGDLGGVSCMLRIIRES  254 (323)
Q Consensus       199 i~~~g~v~~Lv~ll~~~-----------------------~~~~~a~~~L~~l~~-~~~~~~~i~~~g~i~~Lv~ll~~~  254 (323)
                      +++.|++++|..+++..                       .+.+.++.+|++||. .++....+.+.|+++.|+..+...
T Consensus       115 l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~~  194 (684)
T 4gmo_A          115 LYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLISA  194 (684)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHhc
Confidence            99999999999988531                       123567889999997 467777888889999999888543


Q ss_pred             C--ChhHHHHHHHHHHHhcccChHhHHHHHhhccc---HHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 020640          255 T--CDRNKENCIAILHTICLSDRTKWKAMREEEST---HGTISKLAQDGTARAKRKATGILERLKR  315 (323)
Q Consensus       255 ~--~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~---i~~L~~ll~~~~~~~~~~A~~~L~~l~~  315 (323)
                      +  ...++..|+.+|+.++.+++.....+. +.+.   ...+..+.. .++..+..++++|.|+..
T Consensus       195 ~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~-~~~~~~~~~~ll~~~~-~~~~~~~la~giL~Ni~~  258 (684)
T 4gmo_A          195 DIAPQDIYEEAISCLTTLSEDNLKVGQAIT-DDQETHVYDVLLKLAT-GTDPRAVMACGVLHNVFT  258 (684)
T ss_dssp             CCSCHHHHHHHHHHHHHHHTTCHHHHHHHH-TCCSSCHHHHHHHHHH-SSCTTHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHHhccCHHHHHHHH-hcchHHHHHHHHHHhc-CCcHHHHHHHHHHHhHhh
Confidence            2  257899999999999999987554554 3443   334444434 344457788899999853

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=99.11  E-value=1.6e-09  Score=100.76  Aligned_cols=272  Identities=12%  Similarity=0.107  Sum_probs=184.0

Q ss_pred             hhHHHHHHHHhc-C--CchhHHHHHHHHHHHhccC-hhhHHHHhhhcCCHHHHHHhhcccccCCCC--CHHHHHHHHHHH
Q 020640           30 RDHFLSLLKKMS-A--TLPDQTEAAKELRLLTKRM-PSFRALFGESHDAIPQLLSPLSESKCENGI--NPNLQEDVITTL  103 (323)
Q Consensus        30 ~~~i~~Lv~~l~-~--~~~~~~~a~~~L~~l~~~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~--~~~~~~~a~~~L  103 (323)
                      .+.++.|+..+. +  ++..+..|+.+|..++... ++.-.....  ..++.++..|.      ++  ++.++..|+.++
T Consensus       127 ~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~--~ll~~l~~~l~------~~~~~~~vr~~a~~~l  198 (462)
T 1ibr_B          127 PELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSN--EILTAIIQGMR------KEEPSNNVKLAATNAL  198 (462)
T ss_dssp             TTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHH--HHHHHHHHHHS------TTCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHH--HHHHHHHHHhC------CCCCCHHHHHHHHHHH
Confidence            368888999995 4  7788999999999999643 221111222  36677778887      44  789999999999


Q ss_pred             HHhccccc-hh-hhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCch-hhhhccCChHHHHHHhhhcCHhHHH
Q 020640          104 LNLSIHDN-NK-KLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNK-EVIGKSGALKPLIDLLDEGHQSAMK  180 (323)
Q Consensus       104 ~~ls~~~~-~~-~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~-~~i~~~g~i~~Lv~lL~~~~~~~~~  180 (323)
                      .++...-. +. ...... -+++.+...+.+.+++++..++.+|..++...... ......++++.++..+.+.++.++.
T Consensus       199 ~~~~~~~~~~~~~~~~~~-~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~  277 (462)
T 1ibr_B          199 LNSLEFTKANFDKESERH-FIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVAL  277 (462)
T ss_dssp             HHHTTTTHHHHTSHHHHH-HHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHH
T ss_pred             HHHHHHHHHhhhhhHHHH-HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHH
Confidence            98643211 11 011111 13555666677789999999999999997533211 1111116788888888888999999


Q ss_pred             HHHHHHHHhccCCc------------------hhHHHHh---hCchHHHHHHhhcC---------chHHHHHHHHHHHhc
Q 020640          181 DVASAIFNLCITHE------------------NKARAVR---DGGVSVILKKIMDG---------VHVDELLAILAMLST  230 (323)
Q Consensus       181 ~al~aL~~L~~~~~------------------~~~~i~~---~g~v~~Lv~ll~~~---------~~~~~a~~~L~~l~~  230 (323)
                      .++.++.+++....                  ....+++   ...++.++..+.+.         .++..|+.+|..++.
T Consensus       278 ~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~  357 (462)
T 1ibr_B          278 QGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLAT  357 (462)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHH
Confidence            99999988875420                  0011111   23566677777421         578889999988887


Q ss_pred             CHHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHhcccCh-HhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHH
Q 020640          231 NHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDR-TKWKAMREEESTHGTISKLAQDGTARAKRKATGI  309 (323)
Q Consensus       231 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~-~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~  309 (323)
                      .-.  +.+. ..+++.+...+.+. +..+++.|+.++..++.... ......+  ..+++.|+..+.+.++.++..|+++
T Consensus       358 ~~~--~~~~-~~~~~~l~~~l~~~-~~~~r~aal~~l~~l~~~~~~~~~~~~l--~~~~~~l~~~l~d~~~~Vr~~a~~~  431 (462)
T 1ibr_B          358 CCE--DDIV-PHVLPFIKEHIKNP-DWRYRDAAVMAFGCILEGPEPSQLKPLV--IQAMPTLIELMKDPSVVVRDTAAWT  431 (462)
T ss_dssp             HTT--TTHH-HHHHHHHHHHTTCS-SHHHHHHHHHHHHHTSSSSCTTTTCTTT--TTHHHHHHHGGGCSCHHHHHHHHHH
T ss_pred             hcc--HHHH-HHHHHHHHHHhcCC-ChHHHHHHHHHHHHHhcCCcHHHHHHHH--HHHHHHHHHHhcCCCHHHHHHHHHH
Confidence            311  1222 13466777777754 48899999999999997543 2122222  4789999999999999999999999


Q ss_pred             HHHHhcc
Q 020640          310 LERLKRT  316 (323)
Q Consensus       310 L~~l~~~  316 (323)
                      |.+++..
T Consensus       432 l~~~~~~  438 (462)
T 1ibr_B          432 VGRICEL  438 (462)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9999974

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=99.09  E-value=4.5e-09  Score=101.77  Aligned_cols=263  Identities=11%  Similarity=0.051  Sum_probs=180.0

Q ss_pred             hHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccc
Q 020640           31 DHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIH  109 (323)
Q Consensus        31 ~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~  109 (323)
                      ..++.+.+.+. .++.+|..|+.++.++...+++.   +.+ .+.++.|..+|.      ++++.++..|+.+|..++..
T Consensus       121 ~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~---~~~-~~~~~~l~~lL~------d~d~~V~~~A~~aL~~i~~~  190 (591)
T 2vgl_B          121 YLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQM---VED-QGFLDSLRDLIA------DSNPMVVANAVAALSEISES  190 (591)
T ss_dssp             HHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCC---HHH-HHHHHHHHHTTS------CSCHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhh---ccc-ccHHHHHHHHhC------CCChhHHHHHHHHHHHHHhh
Confidence            45666777775 66899999999999999866652   233 467899999998      78999999999999999876


Q ss_pred             cchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHHh
Q 020640          110 DNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNL  189 (323)
Q Consensus       110 ~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L  189 (323)
                      ......+.-..+.+..|+..+...++-.+...++++..++..++..    ....++.+..++++.++.++..|++++..+
T Consensus       191 ~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~----~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l  266 (591)
T 2vgl_B          191 HPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDRE----AQSICERVTPRLSHANSAVVLSAVKVLMKF  266 (591)
T ss_dssp             CCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHH----HHHHHHHHTTCSCSSTTHHHHHHHHHHHHS
T ss_pred             CCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence            5422111111124666777777888888888888888776433211    134677788888888899999999999998


Q ss_pred             ccC----CchhHHHHhhCchHHHHHHhhcC-chHHHHHHHHHHHhc-CH------------------HHHHHHH------
Q 020640          190 CIT----HENKARAVRDGGVSVILKKIMDG-VHVDELLAILAMLST-NH------------------RAVEEIG------  239 (323)
Q Consensus       190 ~~~----~~~~~~i~~~g~v~~Lv~ll~~~-~~~~~a~~~L~~l~~-~~------------------~~~~~i~------  239 (323)
                      ...    .+....+. ....+.|+.++.++ +++..++..|..+.. ++                  ..|..-.      
T Consensus       267 ~~~~~~~~~~~~~~~-~~~~~~L~~L~~~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l  345 (591)
T 2vgl_B          267 LELLPKDSDYYNMLL-KKLAPPLVTLLSGEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRL  345 (591)
T ss_dssp             CCSCCBTTBSHHHHH-HHTHHHHHHHTTSCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHT
T ss_pred             hhccCCCHHHHHHHH-HHHHHHHHHHhcCCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHH
Confidence            742    23222222 34567777766544 677778887777764 11                  1222211      


Q ss_pred             -hcC----CHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHh
Q 020640          240 -DLG----GVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLK  314 (323)
Q Consensus       240 -~~g----~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~  314 (323)
                       +..    +++.|..++++.+ +..+..++.++..++...+..      ...+++.|++++...++.+...+...+..+.
T Consensus       346 ~~~~nv~~iv~~L~~~l~~~d-~~~r~~~v~aI~~la~~~~~~------~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii  418 (591)
T 2vgl_B          346 ASQANIAQVLAELKEYATEVD-VDFVRKAVRAIGRCAIKVEQS------AERCVSTLLDLIQTKVNYVVQEAIVVIRDIF  418 (591)
T ss_dssp             CCSSTHHHHHHHHHHHTTSSC-HHHHHHHHHHHHHHHTTCHHH------HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred             CChhhHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHhChhH------HHHHHHHHHHHHcccchHHHHHHHHHHHHHH
Confidence             222    3445555555444 889999999999999876532      1346788888888888888777777777765


Q ss_pred             c
Q 020640          315 R  315 (323)
Q Consensus       315 ~  315 (323)
                      +
T Consensus       419 ~  419 (591)
T 2vgl_B          419 R  419 (591)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=99.07  E-value=1.4e-08  Score=97.45  Aligned_cols=263  Identities=11%  Similarity=0.043  Sum_probs=178.0

Q ss_pred             hHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccc
Q 020640           31 DHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIH  109 (323)
Q Consensus        31 ~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~  109 (323)
                      ..++.|...+. ++..+|..|..+|.+++...+.  ..+ . ...++.+..+..      +++...+..++.++..++..
T Consensus        87 ~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~--~~~-~-~~l~~~l~~l~~------~~~~~~R~~a~~~l~~~~~~  156 (588)
T 1b3u_A           87 CLLPPLESLATVEETVVRDKAVESLRAISHEHSP--SDL-E-AHFVPLVKRLAG------GDWFTSRTSACGLFSVCYPR  156 (588)
T ss_dssp             GGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCH--HHH-H-HTHHHHHHHHHT------CSSHHHHHHHGGGHHHHTTT
T ss_pred             HHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCH--HHH-H-HHHHHHHHHHhc------CCCcHHHHHHHHHHHHHHHh
Confidence            45666665554 5577888899999888865442  122 2 234555555555      56788888888888877654


Q ss_pred             cchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHHh
Q 020640          110 DNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNL  189 (323)
Q Consensus       110 ~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L  189 (323)
                      -...  ...  .+++.+..+++++++.++..++.+|..++..-...  ......++.+..++.+++..++..|+.+|..+
T Consensus       157 ~~~~--~~~--~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l  230 (588)
T 1b3u_A          157 VSSA--VKA--ELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD--NVKSEIIPMFSNLASDEQDSVRLLAVEACVNI  230 (588)
T ss_dssp             SCHH--HHH--HHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH--HHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHH
T ss_pred             cCHH--HHH--HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHH--hHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence            3321  122  26777888888999999999999999997543321  12345788899999988999999999999998


Q ss_pred             ccCCchhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHH
Q 020640          190 CITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAIL  267 (323)
Q Consensus       190 ~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L  267 (323)
                      +...+..  ......++.+..++.+.  .++..++.+|..++..-..  .......++.++.++++.+ +.++..|+.+|
T Consensus       231 ~~~~~~~--~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~-~~vr~~a~~~l  305 (588)
T 1b3u_A          231 AQLLPQE--DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP--EITKTDLVPAFQNLMKDCE-AEVRAAASHKV  305 (588)
T ss_dssp             HHHSCHH--HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH--HHHHHTHHHHHHHHHTCSS-HHHHHHHHHHH
T ss_pred             HHhCCHH--HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc--ccchhHHHHHHHHHhCCCc-HHHHHHHHHHH
Confidence            7644321  12234777888888776  5789999999988863111  1223456889999998654 88999999999


Q ss_pred             HHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHh
Q 020640          268 HTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLK  314 (323)
Q Consensus       268 ~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~  314 (323)
                      ..++..-+............++.+..++.+.++.++..+.++|..++
T Consensus       306 ~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~  352 (588)
T 1b3u_A          306 KEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLS  352 (588)
T ss_dssp             HHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGH
T ss_pred             HHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            99887543211100001356666667777667777777766666654

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=99.07  E-value=4.5e-09  Score=100.84  Aligned_cols=261  Identities=14%  Similarity=0.082  Sum_probs=186.8

Q ss_pred             hHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccc
Q 020640           31 DHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIH  109 (323)
Q Consensus        31 ~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~  109 (323)
                      ..+|.+.+.++ .++.+|..++.+|..++..-.  .... . ...+|.+..+++      ++++.++..++.+|..+...
T Consensus       324 ~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~--~~~~-~-~~l~p~l~~~l~------d~~~~Vr~~a~~~l~~l~~~  393 (588)
T 1b3u_A          324 QILPCIKELVSDANQHVKSALASVIMGLSPILG--KDNT-I-EHLLPLFLAQLK------DECPEVRLNIISNLDCVNEV  393 (588)
T ss_dssp             THHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHC--HHHH-H-HHTHHHHHHHHT------CSCHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh--HhHH-H-HHHHHHHHHHhC------CCchHHHHHHHHHHHHHHHh
Confidence            46666777775 558889999999888874321  1122 2 357888889888      77899999999888877543


Q ss_pred             cchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHHh
Q 020640          110 DNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNL  189 (323)
Q Consensus       110 ~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L  189 (323)
                      -.. .....  .++|.+..++++.+..++..++.++..++..-..  .......++.++.++.+++..++..|+.+|..+
T Consensus       394 ~~~-~~~~~--~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l  468 (588)
T 1b3u_A          394 IGI-RQLSQ--SLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGV--EFFDEKLNSLCMAWLVDHVYAIREAATSNLKKL  468 (588)
T ss_dssp             SCH-HHHHH--HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCG--GGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred             cCH-HHHHH--HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCH--HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence            221 11222  3688888888888999999999999998742111  122334678888999998999999999999998


Q ss_pred             ccCCchhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHH
Q 020640          190 CITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAIL  267 (323)
Q Consensus       190 ~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L  267 (323)
                      +.......  .....++.|..++.+.  .++..++.++..++..-.  .......+++.|+..+++.. +.++..++.+|
T Consensus       469 ~~~~~~~~--~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~--~~~~~~~~~~~l~~~l~d~~-~~Vr~~a~~~l  543 (588)
T 1b3u_A          469 VEKFGKEW--AHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCG--QDITTKHMLPTVLRMAGDPV-ANVRFNVAKSL  543 (588)
T ss_dssp             HHHHCHHH--HHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHH--HHHHHHHTHHHHHHGGGCSC-HHHHHHHHHHH
T ss_pred             HHHhCchh--HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHhhCCCCC-chHHHHHHHHH
Confidence            76433221  2234777788777665  578888999988876311  11233457888999888654 88999999999


Q ss_pred             HHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 020640          268 HTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKR  315 (323)
Q Consensus       268 ~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~  315 (323)
                      ..++..-..   ... ...+++.|.+++.+.+..++..|..+|..+.+
T Consensus       544 ~~l~~~~~~---~~~-~~~~~p~l~~l~~d~d~~vr~~a~~al~~l~~  587 (588)
T 1b3u_A          544 QKIGPILDN---STL-QSEVKPILEKLTQDQDVDVKYFAQEALTVLSL  587 (588)
T ss_dssp             HHHGGGSCH---HHH-HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhch---hhh-HHHHHHHHHHHcCCCchhHHHHHHHHHHHhhc
Confidence            999875432   222 24677888888888899999999999988753

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=98.98  E-value=1.5e-08  Score=98.05  Aligned_cols=255  Identities=13%  Similarity=0.167  Sum_probs=173.6

Q ss_pred             HHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhcccc
Q 020640           32 HFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHD  110 (323)
Q Consensus        32 ~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~  110 (323)
                      ..+.+++.++ .+...|.-+...+..++..+++..      .-++..+.+-|.      ++++.++..|+.+|.++..  
T Consensus        50 ~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~~------~l~~n~l~kdL~------~~n~~ir~~AL~~L~~i~~--  115 (591)
T 2vgl_B           50 LFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMA------IMAVNSFVKDCE------DPNPLIRALAVRTMGCIRV--  115 (591)
T ss_dssp             GHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHHH------HTTHHHHGGGSS------SSSHHHHHHHHHHHHTCCS--
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHcccCchHH------HHHHHHHHHHcC------CCCHHHHHHHHHHHHcCCh--
Confidence            4455666554 456666667777777765444321      124566777677      7789999999999988852  


Q ss_pred             chhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHHhc
Q 020640          111 NNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLC  190 (323)
Q Consensus       111 ~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~  190 (323)
                         ..+..  .+++.+..++.+.++.+++.|+.++..+....+.  .+.+.+.++.|.++|.++++.++..|+.+|..++
T Consensus       116 ---~~~~~--~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~--~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~  188 (591)
T 2vgl_B          116 ---DKITE--YLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQ--MVEDQGFLDSLRDLIADSNPMVVANAVAALSEIS  188 (591)
T ss_dssp             ---GGGHH--HHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCC--CHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHT
T ss_pred             ---HHHHH--HHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChh--hcccccHHHHHHHHhCCCChhHHHHHHHHHHHHH
Confidence               11322  1466788899999999999999999999753322  2222568899999999999999999999999998


Q ss_pred             cCCchhH-HHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcC-HHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHH
Q 020640          191 ITHENKA-RAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTN-HRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAI  266 (323)
Q Consensus       191 ~~~~~~~-~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~  266 (323)
                      ..+.... .-...+.+..|+..+.+.  -.+...+.+|..++.. ++...     ..++.+..++++. ++.++..|+.+
T Consensus       189 ~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~-----~~l~~l~~~l~~~-~~~V~~ea~~~  262 (591)
T 2vgl_B          189 ESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQ-----SICERVTPRLSHA-NSAVVLSAVKV  262 (591)
T ss_dssp             TSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHH-----HHHHHHTTCSCSS-TTHHHHHHHHH
T ss_pred             hhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHH-----HHHHHHHHHHcCC-ChHHHHHHHHH
Confidence            8764221 101123456677766654  3456667777777653 22222     3456677777754 48899999999


Q ss_pred             HHHhcc---cChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhcc
Q 020640          267 LHTICL---SDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRT  316 (323)
Q Consensus       267 L~~L~~---~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~  316 (323)
                      +..+..   .+++..+.+.  ....+.|+.++. ++++++.-|...|..+...
T Consensus       263 i~~l~~~~~~~~~~~~~~~--~~~~~~L~~L~~-~d~~vr~~aL~~l~~i~~~  312 (591)
T 2vgl_B          263 LMKFLELLPKDSDYYNMLL--KKLAPPLVTLLS-GEPEVQYVALRNINLIVQK  312 (591)
T ss_dssp             HHHSCCSCCBTTBSHHHHH--HHTHHHHHHHTT-SCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhccCCCHHHHHHHH--HHHHHHHHHHhc-CCccHHHHHHHHHHHHHHh
Confidence            999874   2333344433  356778887664 7899999999999888753

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=98.86  E-value=1.7e-07  Score=91.08  Aligned_cols=143  Identities=11%  Similarity=0.029  Sum_probs=104.2

Q ss_pred             hHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccc
Q 020640           31 DHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIH  109 (323)
Q Consensus        31 ~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~  109 (323)
                      -+++.+.+-+. .++.+|..|+.+|.++..  ++    +.+  ..++.+.++|.      +.++.++..|+.++.++...
T Consensus       107 l~in~l~kDL~~~n~~vr~lAL~~L~~i~~--~~----~~~--~l~~~l~~~L~------~~~~~VRk~A~~al~~l~~~  172 (618)
T 1w63_A          107 LMTNCIKNDLNHSTQFVQGLALCTLGCMGS--SE----MCR--DLAGEVEKLLK------TSNSYLRKKAALCAVHVIRK  172 (618)
T ss_dssp             HHHHHHHHHHSCSSSHHHHHHHHHHHHHCC--HH----HHH--HHHHHHHHHHH------SCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCHhHHHHHHHHHHhcCC--HH----HHH--HHHHHHHHHHc------CCCHHHHHHHHHHHHHHHHH
Confidence            35666777774 568888899999999873  32    222  45777888888      77899999999999998764


Q ss_pred             cchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhh---------------c
Q 020640          110 DNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDE---------------G  174 (323)
Q Consensus       110 ~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~---------------~  174 (323)
                      ...   .+.  ++++.+..++.+.++.++..|+.+|..++..+....... ...++.++++|.+               .
T Consensus       173 ~p~---~v~--~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~-~~~v~~l~~~L~~~~~~~~~~~~~~~~~~  246 (618)
T 1w63_A          173 VPE---LME--MFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHF-RKLVPQLVRILKNLIMSGYSPEHDVSGIS  246 (618)
T ss_dssp             CGG---GGG--GGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHH-HTTHHHHHHHHHHHHHSCCCTTTCSSSSS
T ss_pred             ChH---HHH--HHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHH-HHHHHHHHHHHHHHHcCCCCccccccCCC
Confidence            322   222  367777888889999999999999999986532211111 3578888887764               3


Q ss_pred             CHhHHHHHHHHHHHhccCC
Q 020640          175 HQSAMKDVASAIFNLCITH  193 (323)
Q Consensus       175 ~~~~~~~al~aL~~L~~~~  193 (323)
                      ++-.+...+++|..++..+
T Consensus       247 ~~~~q~~il~~L~~l~~~~  265 (618)
T 1w63_A          247 DPFLQVRILRLLRILGRND  265 (618)
T ss_dssp             CHHHHHHHHHHHHHHTTTC
T ss_pred             CChHHHHHHHHHHHhCCCC
Confidence            6777888888888888765

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=98.83  E-value=8.4e-08  Score=96.28  Aligned_cols=265  Identities=10%  Similarity=0.092  Sum_probs=176.5

Q ss_pred             HHHHHhc-CCchhHHHHHHHHHHHhccCh-hhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccch
Q 020640           35 SLLKKMS-ATLPDQTEAAKELRLLTKRMP-SFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNN  112 (323)
Q Consensus        35 ~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~  112 (323)
                      .+.+.+. .++..|..|+.++..++.... +.-.....  ..++.|++.+.      ++++.++..++.++..++..-..
T Consensus       373 ~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~--~il~~l~~~l~------d~~~~vr~~a~~~l~~l~~~~~~  444 (861)
T 2bpt_A          373 FVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVH--QALPSILNLMN------DQSLQVKETTAWCIGRIADSVAE  444 (861)
T ss_dssp             HHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH--HHHHHHHHGGG------CSCHHHHHHHHHHHHHHHHHHGG
T ss_pred             HHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHH--HHHHHHHHHcC------CCcHHHHHHHHHHHHHHHHHhhh
Confidence            3334443 457889999999999996432 22222233  36788888887      77899999999999888753211


Q ss_pred             ---hhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCC--chhhhhc--cCChHHHHHHhhhcC--HhHHHHHH
Q 020640          113 ---KKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDS--NKEVIGK--SGALKPLIDLLDEGH--QSAMKDVA  183 (323)
Q Consensus       113 ---~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~--~~~~i~~--~g~i~~Lv~lL~~~~--~~~~~~al  183 (323)
                         ......  .+++.++..+++. +.++..++++|.+++..-.  ....+..  ..+++.|++.+.+.+  ..++..++
T Consensus       445 ~~~~~~~~~--~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~  521 (861)
T 2bpt_A          445 SIDPQQHLP--GVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAF  521 (861)
T ss_dssp             GSCTTTTHH--HHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHH
T ss_pred             hcCCHHHHH--HHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHH
Confidence               112222  2677788888775 8999999999999874311  0111111  346788888887533  68899999


Q ss_pred             HHHHHhccCCchh-HHHHhhCchHHHHHHhhcC-----------------chHHHHHHHHHHHhcC-HH-HHHHHHhcCC
Q 020640          184 SAIFNLCITHENK-ARAVRDGGVSVILKKIMDG-----------------VHVDELLAILAMLSTN-HR-AVEEIGDLGG  243 (323)
Q Consensus       184 ~aL~~L~~~~~~~-~~i~~~g~v~~Lv~ll~~~-----------------~~~~~a~~~L~~l~~~-~~-~~~~i~~~g~  243 (323)
                      .+|..++...... ...+. ..++.++..+.+.                 .++..++.+|.+++.. +. ....  -...
T Consensus       522 ~al~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~--~~~l  598 (861)
T 2bpt_A          522 SALTTMVEYATDTVAETSA-SISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPV--ADML  598 (861)
T ss_dssp             HHHHHHHHHCCGGGHHHHH-HHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGG--HHHH
T ss_pred             HHHHHHHHHcchhhHHHHH-HHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHH--HHHH
Confidence            9999997755332 22222 3566666666421                 3456788888888763 22 1111  1145


Q ss_pred             HHHHHHHHhccCCh-hHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhcc
Q 020640          244 VSCMLRIIRESTCD-RNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRT  316 (323)
Q Consensus       244 i~~Lv~ll~~~~~~-~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~  316 (323)
                      ++.++.+++..+ . .+++.++.++..++..........+  ..+++.|.+.+.+.++.++..|..++..+.+.
T Consensus       599 ~~~l~~~l~~~~-~~~v~~~~~~~l~~l~~~~~~~~~~~l--~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~  669 (861)
T 2bpt_A          599 MGLFFRLLEKKD-SAFIEDDVFYAISALAASLGKGFEKYL--ETFSPYLLKALNQVDSPVSITAVGFIADISNS  669 (861)
T ss_dssp             HHHHHHHHHSTT-GGGTHHHHHHHHHHHHHHHGGGGHHHH--HHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHccCC-CCcHHHHHHHHHHHHHHHHhhhHHHHH--HHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence            777888888654 5 7899999999998876544444444  35889999999877888999999998888754

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=98.82  E-value=1.2e-06  Score=85.22  Aligned_cols=249  Identities=9%  Similarity=0.040  Sum_probs=178.9

Q ss_pred             hHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccc
Q 020640           31 DHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIH  109 (323)
Q Consensus        31 ~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~  109 (323)
                      ..++.+.+.+. .++.+|..|+.++.++...+++..      .+.++.+.++|.      +.|+.++..|+.+|..++..
T Consensus       142 ~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v------~~~~~~l~~lL~------D~d~~V~~~Al~~L~~i~~~  209 (618)
T 1w63_A          142 DLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM------EMFLPATKNLLN------EKNHGVLHTSVVLLTEMCER  209 (618)
T ss_dssp             HHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG------GGGGGGTTTSTT------CCCHHHHHHHHHHHHHHCCS
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH------HHHHHHHHHHhC------CCCHhHHHHHHHHHHHHHHh
Confidence            45677777775 679999999999999998777543      256777888888      78999999999999999865


Q ss_pred             cchhhhhhccCCcHHHHHHHHhc---------------CCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhh-
Q 020640          110 DNNKKLVAETPMVIPLLMDALRS---------------GTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDE-  173 (323)
Q Consensus       110 ~~~~~~i~~~~g~i~~Lv~ll~~---------------~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~-  173 (323)
                      +........  .+++.++.+|+.               .++-.+...+.+|..++..+...    ....++.|..++.. 
T Consensus       210 ~~~~~~~~~--~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~----~~~~~~~L~~l~~~~  283 (618)
T 1w63_A          210 SPDMLAHFR--KLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDS----SEAMNDILAQVATNT  283 (618)
T ss_dssp             HHHHHHHHH--TTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHH----HHTTHHHHHHHHHTS
T ss_pred             ChHHHHHHH--HHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHH----HHHHHHHHHHHHhcc
Confidence            432222222  268888887763               37888888999999998654321    12345566666542 


Q ss_pred             -----cCHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcCHHHHHHHHhcCCHHH
Q 020640          174 -----GHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSC  246 (323)
Q Consensus       174 -----~~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~  246 (323)
                           .+..+...|++++..+...++    +.. .+++.|..++.++  .++..++..|..++...   ..+++ .....
T Consensus       284 ~~~~~~~~aV~~ea~~~i~~l~~~~~----l~~-~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~---p~~~~-~~~~~  354 (618)
T 1w63_A          284 ETSKNVGNAILYETVLTIMDIKSESG----LRV-LAINILGRFLLNNDKNIRYVALTSLLKTVQTD---HNAVQ-RHRST  354 (618)
T ss_dssp             CCSSTHHHHHHHHHHHHHHHSCCCHH----HHH-HHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHH---HHHHG-GGHHH
T ss_pred             ccccchHHHHHHHHHHHHHhcCCCHH----HHH-HHHHHHHHHHhCCCCchHHHHHHHHHHHHhhC---HHHHH-HHHHH
Confidence                 245788899999988754321    221 3667888888755  78999999999988732   12222 24567


Q ss_pred             HHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 020640          247 MLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKR  315 (323)
Q Consensus       247 Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~  315 (323)
                      ++..+.+.+ ..++..|+.+|..++....  ...      .+..|.+.+.+.+++.+..+...+..++.
T Consensus       355 i~~~l~d~d-~~Ir~~alelL~~l~~~~n--v~~------iv~eL~~~l~~~d~e~r~~~v~~I~~la~  414 (618)
T 1w63_A          355 IVDCLKDLD-VSIKRRAMELSFALVNGNN--IRG------MMKELLYFLDSCEPEFKADCASGIFLAAE  414 (618)
T ss_dssp             HHHGGGSSC-HHHHHHHHHHHHHHCCSSS--THH------HHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHccCCC-hhHHHHHHHHHHHHccccc--HHH------HHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            778888554 8899999999999988652  223      34667777778889999999999998885

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=98.76  E-value=8.3e-07  Score=89.20  Aligned_cols=272  Identities=12%  Similarity=0.129  Sum_probs=181.0

Q ss_pred             hHHHHHHHHhc-C--CchhHHHHHHHHHHHhccChhhHHHHhh-hcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHh
Q 020640           31 DHFLSLLKKMS-A--TLPDQTEAAKELRLLTKRMPSFRALFGE-SHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNL  106 (323)
Q Consensus        31 ~~i~~Lv~~l~-~--~~~~~~~a~~~L~~l~~~~~~~~~~i~~-~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~l  106 (323)
                      +.++.++..+. +  ++..|..++.++..++..-..  ..+.. ....++.+...+...    +.+..++..|+.++.++
T Consensus       128 ~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~--~~~~~~~~~ll~~l~~~l~~~----~~~~~vr~~a~~~l~~~  201 (876)
T 1qgr_A          128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDP--EQLQDKSNEILTAIIQGMRKE----EPSNNVKLAATNALLNS  201 (876)
T ss_dssp             THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCH--HHHGGGHHHHHHHHHHHHSTT----CSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCH--hhHHhHHHHHHHHHHHhhcCC----CCCHHHHHHHHHHHHHH
Confidence            57788888885 4  677899999999999864211  11111 023456666767621    12688999999999987


Q ss_pred             ccccc-h-hhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC-CchhhhhccCChHHHHHHhhhcCHhHHHHHH
Q 020640          107 SIHDN-N-KKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALD-SNKEVIGKSGALKPLIDLLDEGHQSAMKDVA  183 (323)
Q Consensus       107 s~~~~-~-~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al  183 (323)
                      ...-. + ....... .+++.+...+.+.+.+++..++.+|..+.... +.-........++.++..+.+.++.++..++
T Consensus       202 ~~~~~~~~~~~~~~~-~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al  280 (876)
T 1qgr_A          202 LEFTKANFDKESERH-FIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGI  280 (876)
T ss_dssp             GGGCHHHHTSHHHHH-HHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHH
T ss_pred             HHHHHHHHHhHHHHH-HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence            64211 1 0111111 15666777777788999999999999997432 2111222236788888888888889999999


Q ss_pred             HHHHHhccCCc---------------------hh-HHHHhhCchHHHHHHhhc-------C--chHHHHHHHHHHHhcCH
Q 020640          184 SAIFNLCITHE---------------------NK-ARAVRDGGVSVILKKIMD-------G--VHVDELLAILAMLSTNH  232 (323)
Q Consensus       184 ~aL~~L~~~~~---------------------~~-~~i~~~g~v~~Lv~ll~~-------~--~~~~~a~~~L~~l~~~~  232 (323)
                      .++.+++....                     .. ...+ ...++.++..+..       .  .++..+..+|..++..-
T Consensus       281 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~  359 (876)
T 1qgr_A          281 EFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGAL-QYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCC  359 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHH-HHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHH-HHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHC
Confidence            99988875420                     00 0011 2356677777742       1  57888888888887632


Q ss_pred             HHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHhcccCh-HhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHH
Q 020640          233 RAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDR-TKWKAMREEESTHGTISKLAQDGTARAKRKATGILE  311 (323)
Q Consensus       233 ~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~-~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~  311 (323)
                      .  ..++. .+++.+...+.+. +..+++.|+.++..++.... +.....+  ...++.|+..+.+.++.++..|.++|.
T Consensus       360 ~--~~~~~-~~l~~l~~~l~~~-~~~~r~~a~~~l~~i~~~~~~~~~~~~~--~~~l~~l~~~l~d~~~~vr~~a~~~l~  433 (876)
T 1qgr_A          360 E--DDIVP-HVLPFIKEHIKNP-DWRYRDAAVMAFGCILEGPEPSQLKPLV--IQAMPTLIELMKDPSVVVRDTAAWTVG  433 (876)
T ss_dssp             G--GGGHH-HHHHHHHHHTTCS-SHHHHHHHHHHHHHTSSSSCHHHHHHHH--HHHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred             c--HhhHH-HHHHHHHHHccCC-ChHHHHHHHHHHHHHHcCCCHHHHHHHH--HHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            1  11111 3456666666654 48899999999999998653 3333433  458899999999999999999999999


Q ss_pred             HHhcc
Q 020640          312 RLKRT  316 (323)
Q Consensus       312 ~l~~~  316 (323)
                      +++..
T Consensus       434 ~~~~~  438 (876)
T 1qgr_A          434 RICEL  438 (876)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            99975

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=98.76  E-value=1.4e-07  Score=94.82  Aligned_cols=269  Identities=11%  Similarity=0.085  Sum_probs=173.2

Q ss_pred             HHHHHHHhc-CCchhHHHHHHHHHHHhccCh-hhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhcccc
Q 020640           33 FLSLLKKMS-ATLPDQTEAAKELRLLTKRMP-SFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHD  110 (323)
Q Consensus        33 i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~  110 (323)
                      ++.+...+. .++.+|..|+.++..++.... +.......  ..++.++..|.      ++++.++..|+.+|.+++..-
T Consensus       368 l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~--~~l~~l~~~l~------d~~~~vr~~a~~~l~~~~~~~  439 (876)
T 1qgr_A          368 LPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVI--QAMPTLIELMK------DPSVVVRDTAAWTVGRICELL  439 (876)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH--HHHHHHHHHHT------CSSHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHH--HHHHHHHHHhC------CCCHHHHHHHHHHHHHHHHhC
Confidence            344444453 558889999999999996543 22222333  47888999998      778999999999999987643


Q ss_pred             ch---hhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCC------------chhhhhc--cCChHHHHHHhhh
Q 020640          111 NN---KKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDS------------NKEVIGK--SGALKPLIDLLDE  173 (323)
Q Consensus       111 ~~---~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~------------~~~~i~~--~g~i~~Lv~lL~~  173 (323)
                      ..   ......  .+++.++..+.+. +.++..++++|.+++....            ....+..  ..+++.|+..+..
T Consensus       440 ~~~~~~~~~l~--~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~  516 (876)
T 1qgr_A          440 PEAAINDVYLA--PLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDR  516 (876)
T ss_dssp             GGGTSSTTTHH--HHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTS
T ss_pred             chhcccHHHHH--HHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhC
Confidence            22   112222  2577778888774 8899999999999974311            0011111  3467777777765


Q ss_pred             c---CHhHHHHHHHHHHHhccCCc-hhHHHHhhCchHHHHHHhhc----------C-------chHHHHHHHHHHHhcCH
Q 020640          174 G---HQSAMKDVASAIFNLCITHE-NKARAVRDGGVSVILKKIMD----------G-------VHVDELLAILAMLSTNH  232 (323)
Q Consensus       174 ~---~~~~~~~al~aL~~L~~~~~-~~~~i~~~g~v~~Lv~ll~~----------~-------~~~~~a~~~L~~l~~~~  232 (323)
                      .   +..++..+..+|..++.... .....+. ..++.++..+..          .       .++..++.++..++..-
T Consensus       517 ~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~  595 (876)
T 1qgr_A          517 PDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQ-KTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKV  595 (876)
T ss_dssp             CSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHH-HHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             cCcchhhHHHHHHHHHHHHHHHCchhhHHHHH-HHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHh
Confidence            3   35677788888888866443 2222222 355566655542          1       23566788888887631


Q ss_pred             HHHHHHH--hcCCHHHHHHHHhccCC-hhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcC-CHHHHHHHHH
Q 020640          233 RAVEEIG--DLGGVSCMLRIIRESTC-DRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDG-TARAKRKATG  308 (323)
Q Consensus       233 ~~~~~i~--~~g~i~~Lv~ll~~~~~-~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~~A~~  308 (323)
                      .. ..+.  -..+++.++.+++...+ ..+++.++.++..++..........+  ..+++.|...+.+. ++.++..|.+
T Consensus       596 ~~-~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~--~~~~~~l~~~l~~~~~~~vr~~a~~  672 (876)
T 1qgr_A          596 QH-QDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYM--EAFKPFLGIGLKNYAEYQVCLAAVG  672 (876)
T ss_dssp             CH-HHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGH--HHHHHHHHHHHHHCTTHHHHHHHHH
T ss_pred             Ch-hhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHH--HHHHHHHHHHHcCcchHHHHHHHHH
Confidence            10 1121  12467778888875421 36899999999999875433333433  24788888888887 8999999999


Q ss_pred             HHHHHhcc
Q 020640          309 ILERLKRT  316 (323)
Q Consensus       309 ~L~~l~~~  316 (323)
                      ++..+.+.
T Consensus       673 ~l~~l~~~  680 (876)
T 1qgr_A          673 LVGDLCRA  680 (876)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99988764

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=98.71  E-value=4.4e-08  Score=102.55  Aligned_cols=269  Identities=12%  Similarity=0.056  Sum_probs=184.2

Q ss_pred             hHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccc
Q 020640           31 DHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIH  109 (323)
Q Consensus        31 ~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~  109 (323)
                      ..++.+++.+. .|.++|..|...|.+........-..-.. ...++.|++.|.      +.++.++..|+.+|..++..
T Consensus         6 ~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~-~~il~~Ll~~L~------d~~~~vR~~A~~~L~~l~~~   78 (1230)
T 1u6g_C            6 YHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSE-RKVVKMILKLLE------DKNGEVQNLAVKCLGPLVSK   78 (1230)
T ss_dssp             HHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHH-HHHHHHHHHHTT------CSSHHHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHH-HHHHHHHHHHhc------CCCHHHHHHHHHHHHHHHHh
Confidence            46778888884 77899999999998876432110000011 235677888887      77899999999999998754


Q ss_pred             cchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCch------hhhhccCChHHHHHHhh-hcCHhHHHHH
Q 020640          110 DNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNK------EVIGKSGALKPLIDLLD-EGHQSAMKDV  182 (323)
Q Consensus       110 ~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~------~~i~~~g~i~~Lv~lL~-~~~~~~~~~a  182 (323)
                      -..  ....  .+++.++..+.++++.++..++.+|..++..-...      ..-.-...++.|++.+. +++..++..|
T Consensus        79 ~~~--~~~~--~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~a  154 (1230)
T 1u6g_C           79 VKE--YQVE--TIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEA  154 (1230)
T ss_dssp             SCH--HHHH--HHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHH
T ss_pred             CCH--HHHH--HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHH
Confidence            322  1222  25677888888888889999999999887432211      01112457889999998 4788999999


Q ss_pred             HHHHHHhccCCch-hHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHhccCChhH
Q 020640          183 ASAIFNLCITHEN-KARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRN  259 (323)
Q Consensus       183 l~aL~~L~~~~~~-~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~  259 (323)
                      +.+|..++..... -.... ...++.++..+.++  .++..++.+|..++.....  .+. ...++.++..+....+...
T Consensus       155 l~~l~~~~~~~~~~l~~~~-~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~--~~~-~~~l~~l~~~L~~~~~~~~  230 (1230)
T 1u6g_C          155 LDIMADMLSRQGGLLVNFH-PSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN--IVF-VDLIEHLLSELSKNDSMST  230 (1230)
T ss_dssp             HHHHHHHHHHTCSSCTTTH-HHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC------C-TTHHHHHHHHHHHTCSSCS
T ss_pred             HHHHHHHHHHhHhHHHHHH-HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCH--HHH-HHHHHHHHHHhccCCchhH
Confidence            9999999753211 00011 12455566666655  6799999999999885221  122 2468889988876543467


Q ss_pred             HHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhcc
Q 020640          260 KENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRT  316 (323)
Q Consensus       260 ~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~  316 (323)
                      +..++.++..++...+......+  ...++.+++.+.+.++.+++.|..++..+.+.
T Consensus       231 r~~a~~~l~~l~~~~~~~~~~~l--~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~  285 (1230)
T 1u6g_C          231 TRTYIQCIAAISRQAGHRIGEYL--EKIIPLVVKFCNVDDDELREYCIQAFESFVRR  285 (1230)
T ss_dssp             CTTHHHHHHHHHHHSSGGGTTSC--TTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence            78889999888876544333322  46899999999888999999999999988764

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=98.67  E-value=4.3e-07  Score=91.09  Aligned_cols=268  Identities=10%  Similarity=0.109  Sum_probs=175.9

Q ss_pred             hHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhh--HHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhc
Q 020640           31 DHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSF--RALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLS  107 (323)
Q Consensus        31 ~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~--~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls  107 (323)
                      ..++.++..+. .++.+|..+++++.+++..-...  .....  ...++.|++.|.      ++ +.++..++.+|.+++
T Consensus       411 ~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~--~~~l~~l~~~l~------~~-~~v~~~a~~al~~l~  481 (861)
T 2bpt_A          411 QALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHL--PGVVQACLIGLQ------DH-PKVATNCSWTIINLV  481 (861)
T ss_dssp             HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTH--HHHHHHHHHHHT------SC-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHH--HHHHHHHHHHhc------cC-hHHHHHHHHHHHHHH
Confidence            46677777775 55788999999999888542210  01111  235677777776      44 889999999999886


Q ss_pred             ccc-----chhhhhhccCCcHHHHHHHHhcCC--HHHHHHHHHHHHHhcCCCCch-hhhhccCChHHHHHHhhhc-----
Q 020640          108 IHD-----NNKKLVAETPMVIPLLMDALRSGT--IETRSNAAAALFTLSALDSNK-EVIGKSGALKPLIDLLDEG-----  174 (323)
Q Consensus       108 ~~~-----~~~~~i~~~~g~i~~Lv~ll~~~~--~~~~~~a~~~L~~L~~~~~~~-~~i~~~g~i~~Lv~lL~~~-----  174 (323)
                      ..-     +.-.....  .+++.|+..+++.+  ..++..++.++..+....... .... ...++.+++.+...     
T Consensus       482 ~~~~~~~~~~l~~~~~--~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~-~~l~~~l~~~l~~~~~~~~  558 (861)
T 2bpt_A          482 EQLAEATPSPIYNFYP--ALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETS-ASISTFVMDKLGQTMSVDE  558 (861)
T ss_dssp             HHHSSSSSCGGGGGHH--HHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHH-HHHHHHHHHHHHHHTTSCG
T ss_pred             HhcccccchhhHHHHH--HHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHH-HHHHHHHHHHHHHHHhhhc
Confidence            532     11112222  25677788887543  678999999999997543321 1111 23667777776531     


Q ss_pred             ----------CHhHHHHHHHHHHHhccCCchh-HHHHhhCchHHHHHHhhcC---chHHHHHHHHHHHhcC--HHHHHHH
Q 020640          175 ----------HQSAMKDVASAIFNLCITHENK-ARAVRDGGVSVILKKIMDG---VHVDELLAILAMLSTN--HRAVEEI  238 (323)
Q Consensus       175 ----------~~~~~~~al~aL~~L~~~~~~~-~~i~~~g~v~~Lv~ll~~~---~~~~~a~~~L~~l~~~--~~~~~~i  238 (323)
                                ...++..++.+|.+++..-... ..... ..++.++..+++.   .+++.++.++..++..  ++....+
T Consensus       559 ~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l  637 (861)
T 2bpt_A          559 NQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVAD-MLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYL  637 (861)
T ss_dssp             GGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHH-HHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred             ccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH-HHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHH
Confidence                      3456778889998887644321 11111 3666777777754   5788888888888863  2222222


Q ss_pred             HhcCCHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCC--HHHHHHHHHHHHHHhcc
Q 020640          239 GDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGT--ARAKRKATGILERLKRT  316 (323)
Q Consensus       239 ~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~--~~~~~~A~~~L~~l~~~  316 (323)
                      -  ..++.+...+.+. +..++..++.++..++..-.+.....+  ..+++.+.+.+.+.+  +.++..+..++..+...
T Consensus       638 ~--~i~~~l~~~l~~~-~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~  712 (861)
T 2bpt_A          638 E--TFSPYLLKALNQV-DSPVSITAVGFIADISNSLEEDFRRYS--DAMMNVLAQMISNPNARRELKPAVLSVFGDIASN  712 (861)
T ss_dssp             H--HHHHHHHHHHHCT-TSHHHHHHHHHHHHHHHHTGGGGHHHH--HHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHH
T ss_pred             H--HHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHhchhccchH--HHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHH
Confidence            2  3678888888644 477999999999998876544444443  467888888888764  88999999999888764

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=98.61  E-value=3.2e-07  Score=85.12  Aligned_cols=258  Identities=10%  Similarity=-0.000  Sum_probs=172.2

Q ss_pred             hcCCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccc-hhh----
Q 020640           40 MSATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDN-NKK----  114 (323)
Q Consensus        40 l~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~-~~~----  114 (323)
                      ++.+..+|..|-..|..+...+        . .+.+..|+.++...    +.++.++..|+..|.++-.... ...    
T Consensus        11 ~s~d~~~r~~Ae~~L~~~~~~~--------~-~~~~~~L~~il~~~----~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~   77 (462)
T 1ibr_B           11 VSPDRLELEAAQKFLERAAVEN--------L-PTFLVELSRVLANP----GNSQVARVAAGLQIKNSLTSKDPDIKAQYQ   77 (462)
T ss_dssp             TCSCHHHHHHHHHHHHHHHHHH--------H-HHHHHHHHHHHHCT----TSCHHHHHHHHHHHHHHHCCSSHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHhhC--------h-HHHHHHHHHHHHcC----CCChHHHHHHHHHHHHhccccchHHHHHHH
Confidence            3567888999999998876421        1 45566788888742    3478999999999998754321 000    


Q ss_pred             ----hhh--ccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhc--CHhHHHHHHHHH
Q 020640          115 ----LVA--ETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEG--HQSAMKDVASAI  186 (323)
Q Consensus       115 ----~i~--~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~al~aL  186 (323)
                          .+-  ....+...++..+.++++.+ ..++.++..++..+....  .-.+.++.|++.+.++  ++.++..++.+|
T Consensus        78 ~~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~--~w~~ll~~L~~~l~~~~~~~~~r~~al~~l  154 (462)
T 1ibr_B           78 QRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVN--QWPELIPQLVANVTNPNSTEHMKESTLEAI  154 (462)
T ss_dssp             HHHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGT--CCTTHHHHHHHHHHCTTCCHHHHHHHHHHH
T ss_pred             hhhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhcccc--ccHHHHHHHHHHhccCCCCHHHHHHHHHHH
Confidence                000  00113345677788777777 888899998875431110  1157899999999988  899999999999


Q ss_pred             HHhccCC--chhHHHHhhCchHHHHHHhhcC----chHHHHHHHHHHHhcC-HHHH-HHHHhcCCHHHHHHHHhccCChh
Q 020640          187 FNLCITH--ENKARAVRDGGVSVILKKIMDG----VHVDELLAILAMLSTN-HRAV-EEIGDLGGVSCMLRIIRESTCDR  258 (323)
Q Consensus       187 ~~L~~~~--~~~~~i~~~g~v~~Lv~ll~~~----~~~~~a~~~L~~l~~~-~~~~-~~i~~~g~i~~Lv~ll~~~~~~~  258 (323)
                      ..++...  +.-.... ...++.++..+.+.    .++..++.++.++... ++.- ......-.++.+...+.+. ++.
T Consensus       155 ~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~  232 (462)
T 1ibr_B          155 GYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCP-DTR  232 (462)
T ss_dssp             HHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCS-SHH
T ss_pred             HHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC-CHH
Confidence            9998643  1111111 13667788888764    4688899999987653 2111 0111111355555666544 488


Q ss_pred             HHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhcc
Q 020640          259 NKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRT  316 (323)
Q Consensus       259 ~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~  316 (323)
                      ++..++.+|..++...+......+. ...++.++..+.+.++.++..|...+..+++.
T Consensus       233 vr~~~~~~l~~l~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~  289 (462)
T 1ibr_B          233 VRVAALQNLVKIMSLYYQYMETYMG-PALFAITIEAMKSDIDEVALQGIEFWSNVCDE  289 (462)
T ss_dssp             HHHHHHHHHHHHHHHCGGGCTTTTT-TTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCchHHHHHHHHHHHHHHHH
Confidence            9999999999999877653333331 16778888888888999999999999888765

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=98.48  E-value=1.4e-05  Score=73.61  Aligned_cols=223  Identities=10%  Similarity=0.059  Sum_probs=153.6

Q ss_pred             HHHHHHHHHHHHHhccccchhhhhhccCC-cHHHHHHHHhc---------------C--CHHHHHHHHHHHHHhcCCCCc
Q 020640           93 PNLQEDVITTLLNLSIHDNNKKLVAETPM-VIPLLMDALRS---------------G--TIETRSNAAAALFTLSALDSN  154 (323)
Q Consensus        93 ~~~~~~a~~~L~~ls~~~~~~~~i~~~~g-~i~~Lv~ll~~---------------~--~~~~~~~a~~~L~~L~~~~~~  154 (323)
                      ...+..++..|..|...++.|..+.+.+| .++.++.+++.               +  ....+..++-++|-|+..++.
T Consensus       182 ~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~~  261 (480)
T 1ho8_A          182 MDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPVF  261 (480)
T ss_dssp             HHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSHHH
T ss_pred             CchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHHHHHHHHcCHHH
Confidence            44566788899999888899999886543 46666554431               1  356788999999999998877


Q ss_pred             hhhhhccCCh--HHHHHHhhhc-CHhHHHHHHHHHHHhccCCc-h----hHHHHhhCchHHHHHHhhcC-----chH---
Q 020640          155 KEVIGKSGAL--KPLIDLLDEG-HQSAMKDVASAIFNLCITHE-N----KARAVRDGGVSVILKKIMDG-----VHV---  218 (323)
Q Consensus       155 ~~~i~~~g~i--~~Lv~lL~~~-~~~~~~~al~aL~~L~~~~~-~----~~~i~~~g~v~~Lv~ll~~~-----~~~---  218 (323)
                      ...+...+..  +.|+++++.. .+++.+-++.+|.||..... .    ...++-.+.+.+++..|...     ++.   
T Consensus       262 ~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~l~~l~~L~~rk~~Dedl~edl  341 (480)
T 1ho8_A          262 ANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALPTVQSLSERKYSDEELRQDI  341 (480)
T ss_dssp             HHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHHHHHHHHSSCCSSHHHHHHH
T ss_pred             HHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccchHHHHHHhhCCCCcHHHHHHH
Confidence            7777766643  6777777764 68899999999999987651 1    12233223335566666643     221   


Q ss_pred             ----HHHHHHHHHHhc---------------CHHHHH-HHH--------hcC--CHHHHHHHHhc---------cCChhH
Q 020640          219 ----DELLAILAMLST---------------NHRAVE-EIG--------DLG--GVSCMLRIIRE---------STCDRN  259 (323)
Q Consensus       219 ----~~a~~~L~~l~~---------------~~~~~~-~i~--------~~g--~i~~Lv~ll~~---------~~~~~~  259 (323)
                          +.--.....+++               .|-++. .|+        +.+  .+..|+++|+.         +.++.+
T Consensus       342 ~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~  421 (480)
T 1ho8_A          342 SNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKII  421 (480)
T ss_dssp             HHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHH
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhccccccccCCCcce
Confidence                111111222221               122322 333        222  58999999974         223556


Q ss_pred             HHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhcc
Q 020640          260 KENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRT  316 (323)
Q Consensus       260 ~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~  316 (323)
                      ..-||.=+..++.+.|. -+.++.+-|+-..+++++.+.+++++..|..++..+-.+
T Consensus       422 laVAc~Digefvr~~P~-gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~~  477 (480)
T 1ho8_A          422 IQVALNDITHVVELLPE-SIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIGY  477 (480)
T ss_dssp             HHHHHHHHHHHHHHCTT-HHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHHH
T ss_pred             EEeecccHHHHHHHCcc-hhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence            77789999999999886 567888899999999999999999999999999988654

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=98.47  E-value=5.1e-06  Score=68.95  Aligned_cols=185  Identities=15%  Similarity=0.089  Sum_probs=143.1

Q ss_pred             hhhHHHHHHHHhc-CCchhHHHHHHHHHHHhccC-hhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHh
Q 020640           29 DRDHFLSLLKKMS-ATLPDQTEAAKELRLLTKRM-PSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNL  106 (323)
Q Consensus        29 ~~~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~l  106 (323)
                      ..+.+..|.+++. +|+.++.+++.+|..+-+.- ...+....+  ..++.++.+++      ++|..+..+|+.+|..+
T Consensus        31 ~e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e--~~Ld~iI~llk------~~dEkval~A~r~L~~L  102 (265)
T 3b2a_A           31 DKRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLE--RHLDVFINALS------QENEKVTIKALRALGYL  102 (265)
T ss_dssp             CHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHH--HHHHHHHHTCC------STTHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHH--HHHHHHHHHHh------ccchhHHHHHHHHHHHH
Confidence            3457888899996 77999999999999999763 334444555  57999999998      88999999999999987


Q ss_pred             ccccc-hhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHH
Q 020640          107 SIHDN-NKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASA  185 (323)
Q Consensus       107 s~~~~-~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~a  185 (323)
                      -.+.+ ....+..   +...+..+++++++-.+..++..+..+.....      ..+++..+..++.+.+..++..++++
T Consensus       103 Le~vpL~~~~y~K---l~~aL~dlik~~~~il~~eaae~Lgklkv~~~------~~~V~~~l~sLl~Skd~~vK~agl~~  173 (265)
T 3b2a_A          103 VKDVPMGSKTFLK---AAKTLVSLLESPDDMMRIETIDVLSKLQPLED------SKLVRTYINELVVSPDLYTKVAGFCL  173 (265)
T ss_dssp             HTTCCBCHHHHHH---HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCC------CHHHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred             HcCCCCCHHHHHH---HHHHHHHHhcCCCchHHHHHHHHhCcCCcccc------hHHHHHHHHHHHhCCChhHHHHHHHH
Confidence            66555 5666655   46889999999999999999999999932221      13467788899988999999999999


Q ss_pred             HHHhccCCchhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcCH
Q 020640          186 IFNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNH  232 (323)
Q Consensus       186 L~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~~  232 (323)
                      |.+++...+....+-  +.+.-+-.++++.  .+++.|+.+|..+.+.|
T Consensus       174 L~eia~~S~D~~i~~--~I~~eI~elL~~eD~~l~e~aLd~Le~ils~p  220 (265)
T 3b2a_A          174 FLNMLNSSADSGHLT--LILDEIPSLLQNDNEFIVELALDVLEKALSFP  220 (265)
T ss_dssp             HHHHGGGCSSCCCGG--GTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSC
T ss_pred             HHHhhcccCCHHHHH--HHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCc
Confidence            999987554332211  2333466677765  57999999999999874

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=98.42  E-value=2.2e-06  Score=89.68  Aligned_cols=226  Identities=14%  Similarity=0.092  Sum_probs=156.5

Q ss_pred             hhHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhcc
Q 020640           30 RDHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSI  108 (323)
Q Consensus        30 ~~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~  108 (323)
                      ...++.+++.+. .++.+|..|+.+|..++..-+.  . ..  ...++.|+..|.      ++++.++..++.+|..++.
T Consensus        47 ~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~--~-~~--~~i~~~Ll~~l~------d~~~~vR~~a~~~L~~i~~  115 (1230)
T 1u6g_C           47 RKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE--Y-QV--ETIVDTLCTNML------SDKEQLRDISSIGLKTVIG  115 (1230)
T ss_dssp             HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH--H-HH--HHHHHHHHHHTT------CSSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH--H-HH--HHHHHHHHHHhc------CCcHHHHHHHHHHHHHHHH
Confidence            357888888885 5688999999999999864332  1 11  235677777777      6677889999999988764


Q ss_pred             ccch-------hhhhhccCCcHHHHHHHHh-cCCHHHHHHHHHHHHHhcCC-CCchhhhhccCChHHHHHHhhhcCHhHH
Q 020640          109 HDNN-------KKLVAETPMVIPLLMDALR-SGTIETRSNAAAALFTLSAL-DSNKEVIGKSGALKPLIDLLDEGHQSAM  179 (323)
Q Consensus       109 ~~~~-------~~~i~~~~g~i~~Lv~ll~-~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~  179 (323)
                      .-..       ......  .+++.|+..+. +++...+..++.++..++.. .+.-.. .-...++.|+..+.+++..++
T Consensus       116 ~l~~~~~~~~~~~~~~~--~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~-~~~~ll~~l~~~L~~~~~~vR  192 (1230)
T 1u6g_C          116 ELPPASSGSALAANVCK--KITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVN-FHPSILTCLLPQLTSPRLAVR  192 (1230)
T ss_dssp             HCC-----CCTHHHHHH--HHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTT-THHHHHHHHGGGGGCSSHHHH
T ss_pred             hCCCcccccchHHHHHH--HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHH-HHHHHHHHHHHHHcCCcHHHH
Confidence            3221       112222  36888899988 57899999999999998742 111111 113467777788888889999


Q ss_pred             HHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcC---chHHHHHHHHHHHhcC-HHHHHHHHh--cCCHHHHHHHHhc
Q 020640          180 KDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG---VHVDELLAILAMLSTN-HRAVEEIGD--LGGVSCMLRIIRE  253 (323)
Q Consensus       180 ~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~---~~~~~a~~~L~~l~~~-~~~~~~i~~--~g~i~~Lv~ll~~  253 (323)
                      ..|+.+|..++...+...  . ...++.++..+.+.   ..+..++.++..++.. ++   .+..  ..+++.++..+.+
T Consensus       193 ~~a~~al~~l~~~~~~~~--~-~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~---~~~~~l~~l~~~ll~~l~d  266 (1230)
T 1u6g_C          193 KRTIIALGHLVMSCGNIV--F-VDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGH---RIGEYLEKIIPLVVKFCNV  266 (1230)
T ss_dssp             HHHHHHHHHHTTTC------C-TTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSG---GGTTSCTTHHHHHHHHHSS
T ss_pred             HHHHHHHHHHHHhcCHHH--H-HHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHHHhcC
Confidence            999999999987654321  1 23577888877643   4667778888877763 22   2222  3578888898886


Q ss_pred             cCChhHHHHHHHHHHHhcccChH
Q 020640          254 STCDRNKENCIAILHTICLSDRT  276 (323)
Q Consensus       254 ~~~~~~~~~a~~~L~~L~~~~~~  276 (323)
                      .+ +.+++.++.++..++...+.
T Consensus       267 ~~-~~vR~~a~~~l~~l~~~~~~  288 (1230)
T 1u6g_C          267 DD-DELREYCIQAFESFVRRCPK  288 (1230)
T ss_dssp             CC-TTTHHHHHHHHHHHHHCTTC
T ss_pred             CC-HHHHHHHHHHHHHHHHHChH
Confidence            54 88999999999988876543

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=98.41  E-value=3.5e-05  Score=74.86  Aligned_cols=104  Identities=10%  Similarity=0.013  Sum_probs=78.1

Q ss_pred             HHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhh--cccccCCCCCHHHHHHHHHHHHHhcc
Q 020640           32 HFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPL--SESKCENGINPNLQEDVITTLLNLSI  108 (323)
Q Consensus        32 ~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL--~~~~~~~~~~~~~~~~a~~~L~~ls~  108 (323)
                      +++.+.+-+. .++.++.-|+.+|.++..  ++.    .+  ..++.+.+.|  .      +.++.++..|+.++..+..
T Consensus       112 ~iN~l~kDl~~~n~~ir~lALr~L~~i~~--~e~----~~--~l~~~v~~~l~~~------d~~~~VRK~A~~al~kl~~  177 (621)
T 2vgl_A          112 INNAIKNDLASRNPTFMGLALHCIANVGS--REM----AE--AFAGEIPKILVAG------DTMDSVKQSAALCLLRLYR  177 (621)
T ss_dssp             HHHHHHHHHHSCCHHHHHHHHHHHHHHCC--HHH----HH--HHTTHHHHHHHCS------SSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCCHHHHHHHHHHhhccCC--HHH----HH--HHHHHHHHHHhCC------CCCHHHHHHHHHHHHHHHH
Confidence            4555555664 567788899999999863  432    22  3566788888  5      7789999999999998876


Q ss_pred             ccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC
Q 020640          109 HDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALD  152 (323)
Q Consensus       109 ~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~  152 (323)
                      ..+   ..+..+++++.+..+|.+.++.++..|+.++..++..+
T Consensus       178 ~~p---~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~  218 (621)
T 2vgl_A          178 TSP---DLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKN  218 (621)
T ss_dssp             HCG---GGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHC
T ss_pred             hCh---hhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhC
Confidence            433   22232468999999999999999999999999997643

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.37  E-value=5e-06  Score=70.75  Aligned_cols=183  Identities=10%  Similarity=0.054  Sum_probs=133.1

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhcCC-CCchhhhhccCChHHHHHHhh-hcCHhHHHHHHHHHHHhccCCchhHHHHhh
Q 020640          125 LLMDALRSGTIETRSNAAAALFTLSAL-DSNKEVIGKSGALKPLIDLLD-EGHQSAMKDVASAIFNLCITHENKARAVRD  202 (323)
Q Consensus       125 ~Lv~ll~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~g~i~~Lv~lL~-~~~~~~~~~al~aL~~L~~~~~~~~~i~~~  202 (323)
                      .+...+.+.+-..+..++..|..+... +.....-. ...++.|.+.+. +.+..++..|+.+|..|+..-.....-.-.
T Consensus        19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~-~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~   97 (242)
T 2qk2_A           19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY-GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYAS   97 (242)
T ss_dssp             THHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHH
T ss_pred             HHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            467788888999999999999998754 22111001 346778888884 789999999999999998533221111112


Q ss_pred             CchHHHHHHhhcC--chHHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHhccc-ChH-hH
Q 020640          203 GGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLS-DRT-KW  278 (323)
Q Consensus       203 g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~-~~~-~~  278 (323)
                      ..++.++..+.+.  .+++.+..+|.+++.....      ..+++.+...+++. ++.+|+.++..|..+... .+. ..
T Consensus        98 ~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~------~~ll~~l~~~l~~~-~~~vr~~~l~~l~~~l~~~~~~~~~  170 (242)
T 2qk2_A           98 ACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL------EAQQESIVESLSNK-NPSVKSETALFIARALTRTQPTALN  170 (242)
T ss_dssp             HHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH------HHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCCGGGCC
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHcCCCCcc
Confidence            3788888888876  5789999999999875321      12467788888865 489999999999996543 333 12


Q ss_pred             HHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhcch
Q 020640          279 KAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTV  317 (323)
Q Consensus       279 ~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~  317 (323)
                      ...+  ..+++.|++++.+.+++++..|..++..+....
T Consensus       171 ~~~l--~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~v  207 (242)
T 2qk2_A          171 KKLL--KLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLM  207 (242)
T ss_dssp             HHHH--HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHH--HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHc
Confidence            2333  368999999999999999999999999988643

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.32  E-value=4.1e-06  Score=71.27  Aligned_cols=179  Identities=15%  Similarity=0.116  Sum_probs=128.7

Q ss_pred             HHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhh-cccccCCCCCHHHHHHHHHHHHHhccccch
Q 020640           35 SLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPL-SESKCENGINPNLQEDVITTLLNLSIHDNN  112 (323)
Q Consensus        35 ~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~  112 (323)
                      .+.+.+. .++..|..|+..|..+....+....  ......++.|...+ +      +.+..++..|+.++..|+..-..
T Consensus        19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~--~~~~~i~~~L~~~l~k------d~~~~V~~~a~~~l~~la~~l~~   90 (242)
T 2qk2_A           19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLEN--GEYGALVSALKKVITK------DSNVVLVAMAGKCLALLAKGLAK   90 (242)
T ss_dssp             THHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCC--CCCHHHHHHHHHHHHH------CSCHHHHHHHHHHHHHHHHHHGG
T ss_pred             HHHhhhccCCHHHHHHHHHHHHHHHccCCCCCC--CCHHHHHHHHHHHhcc------CCCHHHHHHHHHHHHHHHHHHhh
Confidence            4667774 6799999999999999875332110  00012456667777 4      66899999999999999853221


Q ss_pred             -hhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHHhcc
Q 020640          113 -KKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCI  191 (323)
Q Consensus       113 -~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~  191 (323)
                       -...+.  .+++.++..+++.+..++..+..+|.++......      ...++.+...+++.++.++..++.+|..+..
T Consensus        91 ~~~~~~~--~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~  162 (242)
T 2qk2_A           91 RFSNYAS--ACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL------EAQQESIVESLSNKNPSVKSETALFIARALT  162 (242)
T ss_dssp             GGHHHHH--HHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred             hHHHHHH--HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence             112222  2688888888999999999999999999764321      2367888888998899999999999999644


Q ss_pred             CC-ch--hHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhc
Q 020640          192 TH-EN--KARAVRDGGVSVILKKIMDG--VHVDELLAILAMLST  230 (323)
Q Consensus       192 ~~-~~--~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~  230 (323)
                      .. ..  -...+. ..++.|+.++.+.  .++..|..++..++.
T Consensus       163 ~~~~~~~~~~~l~-~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~  205 (242)
T 2qk2_A          163 RTQPTALNKKLLK-LLTTSLVKTLNEPDPTVRDSSAEALGTLIK  205 (242)
T ss_dssp             TCCGGGCCHHHHH-HHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred             HcCCCCccHHHHH-HHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence            32 21  112222 4788899999776  689999999988876

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=98.32  E-value=1.4e-05  Score=66.41  Aligned_cols=220  Identities=12%  Similarity=0.077  Sum_probs=156.5

Q ss_pred             CCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhcccc--chhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcC
Q 020640           73 DAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHD--NNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSA  150 (323)
Q Consensus        73 g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~--~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~  150 (323)
                      +.+..|..+|.      +.|+.++.+++.+|..+-..-  .-+..+.+.  +++.+++++++.++.+.-.|+++|..|-.
T Consensus        33 ~~l~~L~~LL~------dkD~~vk~raL~~LeellK~~~~~l~~~~~e~--~Ld~iI~llk~~dEkval~A~r~L~~LLe  104 (265)
T 3b2a_A           33 RALFLILELAG------EDDETTRLRAFVALGEILKRADSDLRMMVLER--HLDVFINALSQENEKVTIKALRALGYLVK  104 (265)
T ss_dssp             HHHHHHHHHTT------SSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHH--HHHHHHHTCCSTTHHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHh------ccchHHHHHHHHHHHHHHHhccccccHHHHHH--HHHHHHHHHhccchhHHHHHHHHHHHHHc
Confidence            35677889998      889999999999999887663  345566664  69999999999999999999999999976


Q ss_pred             CCC-chhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHH
Q 020640          151 LDS-NKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAM  227 (323)
Q Consensus       151 ~~~-~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~  227 (323)
                      +.+ ....+..  .+..|..++.++++-...+++..|.-+.-....+      +++..+..++.+.  .++..++++|.+
T Consensus       105 ~vpL~~~~y~K--l~~aL~dlik~~~~il~~eaae~Lgklkv~~~~~------~V~~~l~sLl~Skd~~vK~agl~~L~e  176 (265)
T 3b2a_A          105 DVPMGSKTFLK--AAKTLVSLLESPDDMMRIETIDVLSKLQPLEDSK------LVRTYINELVVSPDLYTKVAGFCLFLN  176 (265)
T ss_dssp             TCCBCHHHHHH--HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCCH------HHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHH--HHHHHHHHhcCCCchHHHHHHHHhCcCCcccchH------HHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence            543 2333332  5778888999999999999999999883222222      2445678888665  678889999999


Q ss_pred             HhcCHHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhc-ccHHHHHHHh-hcCCHHHHHH
Q 020640          228 LSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEE-STHGTISKLA-QDGTARAKRK  305 (323)
Q Consensus       228 l~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~-~~i~~L~~ll-~~~~~~~~~~  305 (323)
                      ++........+  ++++..+-.++++. ++.+++.|..++..+....=  ..+++.+- +.....-.+. ..|.|..+.+
T Consensus       177 ia~~S~D~~i~--~~I~~eI~elL~~e-D~~l~e~aLd~Le~ils~pi--~~~~~~~~~~~~~~v~~l~~~~~~~~~~~k  251 (265)
T 3b2a_A          177 MLNSSADSGHL--TLILDEIPSLLQND-NEFIVELALDVLEKALSFPL--LENVKIELLKISRIVDGLVYREGAPIIRLK  251 (265)
T ss_dssp             HGGGCSSCCCG--GGTTTTHHHHHTCS-CHHHHHHHHHHHHHHTTSCC--CSCCHHHHHHHHHHHHHGGGCSSCHHHHHH
T ss_pred             hhcccCCHHHH--HHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCcc--cHhHHHHHHHHHHHHHHHHHhcCChhHHHH
Confidence            99843221111  13455567788865 49999999999999988641  11222111 2222233344 5678999999


Q ss_pred             HHHHHHHH
Q 020640          306 ATGILERL  313 (323)
Q Consensus       306 A~~~L~~l  313 (323)
                      |...-..+
T Consensus       252 a~~v~~~l  259 (265)
T 3b2a_A          252 AKKVSDLI  259 (265)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88766554

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=98.27  E-value=0.00031  Score=56.22  Aligned_cols=215  Identities=14%  Similarity=0.167  Sum_probs=156.8

Q ss_pred             hhhhHHHHHHHHhcCC-chhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHh
Q 020640           28 ADRDHFLSLLKKMSAT-LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNL  106 (323)
Q Consensus        28 ~~~~~i~~Lv~~l~~~-~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~l  106 (323)
                      .+...+..++..|.+| +.+|.+|+..+..++..-++....+.      ..|+-+++.     ++...+....++++..+
T Consensus        29 ~d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~------~kL~vm~~k-----sEaIpltqeIa~a~G~l   97 (253)
T 2db0_A           29 YDESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPML------KKLFSLLKK-----SEAIPLTQEIAKAFGQM   97 (253)
T ss_dssp             HCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHH------HHHHHHHHH-----CCSHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHH------HHHHHHHhh-----cccCchHHHHHHHHhHH
Confidence            4567888999999866 78999999999999987776654444      357777764     66777777778888888


Q ss_pred             ccccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-CCchhhhhccCChHHHHHHhhhcCHhHHHHHHHH
Q 020640          107 SIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSAL-DSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASA  185 (323)
Q Consensus       107 s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~a  185 (323)
                      +..   +..++..  ++|.+..=.+-+++.++.....+|..++.. ++..     .+++.-+..++.+++..-+..|++.
T Consensus        98 a~i---~Pe~v~~--vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~-----~~v~rdi~smltskd~~Dkl~aLnF  167 (253)
T 2db0_A           98 AKE---KPELVKS--MIPVLFANYRIGDEKTKINVSYALEEIAKANPMLM-----ASIVRDFMSMLSSKNREDKLTALNF  167 (253)
T ss_dssp             HHH---CHHHHHH--HHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHH-----HHHHHHHHHHTSCSSHHHHHHHHHH
T ss_pred             HHh---CHHHHHh--hHHHHHHHHhcCCccceecHHHHHHHHHHhChHHH-----HHHHHHHHHHhcCCChHHHHHHHHH
Confidence            753   4555552  688888777888999999999999999753 3222     3466778888998888888888888


Q ss_pred             HHHhccCCchhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhc-CHHHHHHHHhcCCHHHHHHHHhccCChhHHHH
Q 020640          186 IFNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLST-NHRAVEEIGDLGGVSCMLRIIRESTCDRNKEN  262 (323)
Q Consensus       186 L~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~  262 (323)
                      +..+..   |..+-+. -.+|.|..+|.++  -++..++.+|.+++. ++..|..+.      ..++-+.+. ++.++..
T Consensus       168 i~alGe---n~~~yv~-PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii~------~kl~e~~D~-S~lv~~~  236 (253)
T 2db0_A          168 IEAMGE---NSFKYVN-PFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVI------KRLEELNDT-SSLVNKT  236 (253)
T ss_dssp             HHTCCT---TTHHHHG-GGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHHH------HHHHHCCCS-CHHHHHH
T ss_pred             HHHHhc---cCccccC-cchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHHH------HHHHHhcCc-HHHHHHH
Confidence            877643   3333332 3778899999887  478999999999999 566665543      233444433 4778888


Q ss_pred             HHHHHHHhcccC
Q 020640          263 CIAILHTICLSD  274 (323)
Q Consensus       263 a~~~L~~L~~~~  274 (323)
                      ....|..+..-+
T Consensus       237 V~egL~rl~l~e  248 (253)
T 2db0_A          237 VKEGISRLLLLE  248 (253)
T ss_dssp             HHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHh
Confidence            888887776544

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=98.26  E-value=0.00011  Score=71.21  Aligned_cols=252  Identities=9%  Similarity=0.070  Sum_probs=168.6

Q ss_pred             hHHHHHHHHh--c-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhc
Q 020640           31 DHFLSLLKKM--S-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLS  107 (323)
Q Consensus        31 ~~i~~Lv~~l--~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls  107 (323)
                      ..++.+.+.+  . .++.+|..|+.++.++...+++..   .. .+.++.+.++|.      +.++.++..|+.++..++
T Consensus       146 ~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~---~~-~~~~~~l~~lL~------d~d~~V~~~a~~~l~~i~  215 (621)
T 2vgl_A          146 AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLV---PM-GDWTSRVVHLLN------DQHLGVVTAATSLITTLA  215 (621)
T ss_dssp             HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGC---CC-CSCHHHHHHHTT------CSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhc---Cc-hhHHHHHHHHhC------CCCccHHHHHHHHHHHHH
Confidence            4566677777  4 568899999999999998776532   22 478999999998      789999999999999987


Q ss_pred             cccchhhhhhccCCcHHHHHHHHh----cC-------------CHHHHHHHHHHHHHhcCCCC--chhhhhccCChHHHH
Q 020640          108 IHDNNKKLVAETPMVIPLLMDALR----SG-------------TIETRSNAAAALFTLSALDS--NKEVIGKSGALKPLI  168 (323)
Q Consensus       108 ~~~~~~~~i~~~~g~i~~Lv~ll~----~~-------------~~~~~~~a~~~L~~L~~~~~--~~~~i~~~g~i~~Lv  168 (323)
                      ..+..  . ..  ..++.++..|.    .+             ++-.+...+..|..++..++  .+..+.+  .++.++
T Consensus       216 ~~~~~--~-~~--~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il  288 (621)
T 2vgl_A          216 QKNPE--E-FK--TSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETIL  288 (621)
T ss_dssp             HHCHH--H-HT--THHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHH
T ss_pred             HhChH--H-HH--HHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHH
Confidence            64432  1 11  14555554443    21             56677777778777765322  2222222  333343


Q ss_pred             HHh---------hhcC--HhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcCHHHH
Q 020640          169 DLL---------DEGH--QSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAV  235 (323)
Q Consensus       169 ~lL---------~~~~--~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~~~~~  235 (323)
                      ..+         ++.+  ..+...|.+++..+....    .+.. .++..|..++.++  +++..++..|..++......
T Consensus       289 ~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~----~~~~-~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~  363 (621)
T 2vgl_A          289 NKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEP----NLLV-RACNQLGQFLQHRETNLRYLALESMCTLASSEFSH  363 (621)
T ss_dssp             HHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCH----HHHH-HHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTH
T ss_pred             HhhccCcccccccccchHHHHHHHHHHHHHhcCCcH----HHHH-HHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcH
Confidence            322         1122  378888999998886322    2222 2566788888654  68899999999998853222


Q ss_pred             HHHHhcCCHHHHHHHHh-ccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHh
Q 020640          236 EEIGDLGGVSCMLRIIR-ESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLK  314 (323)
Q Consensus       236 ~~i~~~g~i~~Lv~ll~-~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~  314 (323)
                      ..+.  .....++..++ +.+ ..++..++.+|..++..+  ....      .+..|.+.+.+.+.+.+..+...+..++
T Consensus       364 ~~~~--~~~~~i~~~L~~d~d-~~Ir~~aL~lL~~l~~~~--Nv~~------Iv~eL~~yl~~~d~~~~~~~v~~I~~la  432 (621)
T 2vgl_A          364 EAVK--THIETVINALKTERD-VSVRQRAVDLLYAMCDRS--NAQQ------IVAEMLSYLETADYSIREEIVLKVAILA  432 (621)
T ss_dssp             HHHH--TTHHHHHHHHTTCCC-HHHHHHHHHHHHHHCCHH--HHHH------HHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred             HHHH--HHHHHHHHHhccCCC-HhHHHHHHHHHHHHcChh--hHHH------HHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence            2232  34677778887 554 889999999999998643  3333      4456777777788888888888888877


Q ss_pred             c
Q 020640          315 R  315 (323)
Q Consensus       315 ~  315 (323)
                      .
T Consensus       433 ~  433 (621)
T 2vgl_A          433 E  433 (621)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=98.17  E-value=9e-05  Score=65.14  Aligned_cols=154  Identities=5%  Similarity=0.042  Sum_probs=125.8

Q ss_pred             hHHHHHHhhhcCHhHHHHHHHHHHH-hccCCchhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcCHHHHHHHHh
Q 020640          164 LKPLIDLLDEGHQSAMKDVASAIFN-LCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGD  240 (323)
Q Consensus       164 i~~Lv~lL~~~~~~~~~~al~aL~~-L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~~~~~~~i~~  240 (323)
                      +..+++-|.+++.+.++.++--|.. +..+.+-..++++.+|+..|+....++  +.+..++++|.++..+.++-..+++
T Consensus       120 a~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs  199 (339)
T 3dad_A          120 VNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVA  199 (339)
T ss_dssp             HHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred             HHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhC
Confidence            4566677778888889999999998 677778999999999999999999876  7899999999999999999888886


Q ss_pred             c-CCHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhc---------ccHHHHHHHhh---cCCHHHHHHHH
Q 020640          241 L-GGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEE---------STHGTISKLAQ---DGTARAKRKAT  307 (323)
Q Consensus       241 ~-g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~---------~~i~~L~~ll~---~~~~~~~~~A~  307 (323)
                      + ..|+.+..++.. ....+...|+.+|..++..++....-+....         ...+.|+.+++   +++.+++.+|.
T Consensus       200 ~~~fI~~lyslv~s-~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~am  278 (339)
T 3dad_A          200 HSDTIQWLYTLCAS-LSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTV  278 (339)
T ss_dssp             CHHHHHHHHHGGGC-SCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHH
T ss_pred             CHHHHHHHHHHHcC-ccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHH
Confidence            4 579999999985 4477899999999999998865443332211         23779999997   67999999999


Q ss_pred             HHHHHHhcchh
Q 020640          308 GILERLKRTVN  318 (323)
Q Consensus       308 ~~L~~l~~~~~  318 (323)
                      .++..+....+
T Consensus       279 tLIN~lL~~ap  289 (339)
T 3dad_A          279 TLINKTLAALP  289 (339)
T ss_dssp             HHHHHHHHHCS
T ss_pred             HHHHHHHhcCC
Confidence            99988776543

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.14  E-value=4.7e-07  Score=69.59  Aligned_cols=118  Identities=16%  Similarity=0.115  Sum_probs=88.9

Q ss_pred             hHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccc
Q 020640           31 DHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIH  109 (323)
Q Consensus        31 ~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~  109 (323)
                      ..++.++..|+ +++.+|..|+..|.++..             ..++.|+.+|+      ++++.++..|+.+|.++.. 
T Consensus        12 ~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~-------------~~~~~L~~~L~------d~~~~vR~~A~~aL~~~~~-   71 (131)
T 1te4_A           12 SGLVPRGSHMADENKWVRRDVSTALSRMGD-------------EAFEPLLESLS------NEDWRIRGAAAWIIGNFQD-   71 (131)
T ss_dssp             ---------CCSSCCCSSSSCCSSTTSCSS-------------TTHHHHHHGGG------CSCHHHHHHHHHHHGGGCS-
T ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHhCc-------------hHHHHHHHHHc------CCCHHHHHHHHHHHHhcCC-
Confidence            46778888886 668888888887765531             13688999998      7899999999999998752 


Q ss_pred             cchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHH
Q 020640          110 DNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFN  188 (323)
Q Consensus       110 ~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~  188 (323)
                                ...++.|+..++++++.++..++++|..+..          ..+++.|+++++++++.++..|..+|..
T Consensus        72 ----------~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~  130 (131)
T 1te4_A           72 ----------ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLET  130 (131)
T ss_dssp             ----------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred             ----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence                      1257889999999999999999999998852          3468999999998899999999998864

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=98.03  E-value=8.2e-05  Score=63.64  Aligned_cols=190  Identities=8%  Similarity=0.110  Sum_probs=130.9

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHH-hcCC-CCchhhhhc-cCChHHHHHHh-hhcCHhHHHHHHHHHHHhccCCc-hhH--H
Q 020640          126 LMDALRSGTIETRSNAAAALFT-LSAL-DSNKEVIGK-SGALKPLIDLL-DEGHQSAMKDVASAIFNLCITHE-NKA--R  198 (323)
Q Consensus       126 Lv~ll~~~~~~~~~~a~~~L~~-L~~~-~~~~~~i~~-~g~i~~Lv~lL-~~~~~~~~~~al~aL~~L~~~~~-~~~--~  198 (323)
                      +...+.+.+-.-+..++..|.. +... +.....-.+ ...+..|.+.+ ++.+..++..|+.+|..|+.+-. ...  .
T Consensus        21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~  100 (249)
T 2qk1_A           21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD  100 (249)
T ss_dssp             HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred             HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence            4456788888999999999999 8632 211100112 34577888888 56788999999999999985322 111  1


Q ss_pred             HHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcC-HHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHhcccCh
Q 020640          199 AVRDGGVSVILKKIMDG--VHVDELLAILAMLSTN-HRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDR  275 (323)
Q Consensus       199 i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~  275 (323)
                      ... -.++.++..+++.  .+++.+..+|..++.. +.....-.-..+++.|...+++. ++.+|+.++.+|..+....+
T Consensus       101 y~~-~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k-~~~vk~~al~~l~~~~~~~~  178 (249)
T 2qk1_A          101 YVS-LVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHK-TPQIRMECTQLFNASMKEEK  178 (249)
T ss_dssp             HHH-HHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHCC
T ss_pred             HHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHcC
Confidence            222 2788899988876  5777777777777762 11100000012467888888865 48999999999999987664


Q ss_pred             ---HhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhcchh
Q 020640          276 ---TKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTVN  318 (323)
Q Consensus       276 ---~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~  318 (323)
                         ......+ ....++.|.+++.+.++.++..|..+|..+++.-.
T Consensus       179 ~~~~~l~~~l-~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG  223 (249)
T 2qk1_A          179 DGYSTLQRYL-KDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFG  223 (249)
T ss_dssp             SCSHHHHHHH-TTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHC
T ss_pred             CcchhHHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC
Confidence               2222222 14799999999999999999999999999886443

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=98.02  E-value=0.00099  Score=66.65  Aligned_cols=233  Identities=11%  Similarity=-0.002  Sum_probs=156.6

Q ss_pred             HHHHHHHHhc-CC--------chhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHH
Q 020640           32 HFLSLLKKMS-AT--------LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITT  102 (323)
Q Consensus        32 ~i~~Lv~~l~-~~--------~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~  102 (323)
                      ++..|.+.+. ++        +.++..|+..|.....++..        ..+++.|..+|.      +++......|+.+
T Consensus       430 ~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~--------eev~e~L~~~L~------dd~~~~~~~AalA  495 (963)
T 4ady_A          430 TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN--------IEVYEALKEVLY------NDSATSGEAAALG  495 (963)
T ss_dssp             HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC--------HHHHHHHHHHHH------TCCHHHHHHHHHH
T ss_pred             HHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC--------HHHHHHHHHHHh------cCCHHHHHHHHHH
Confidence            4555555563 22        44666777777776543321        235667888887      5556666677777


Q ss_pred             HHHhccccchhhhhhccCCcHHHHHHHH-hcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhh-cCHhHHH
Q 020640          103 LLNLSIHDNNKKLVAETPMVIPLLMDAL-RSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDE-GHQSAMK  180 (323)
Q Consensus       103 L~~ls~~~~~~~~i~~~~g~i~~Lv~ll-~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~  180 (323)
                      |..+-....+..       ++..|+..+ ...+..++..++..|.-+....        ...++.+++.|.. .++-++.
T Consensus       496 LGli~vGTgn~~-------ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~--------~e~~~~li~~L~~~~dp~vRy  560 (963)
T 4ady_A          496 MGLCMLGTGKPE-------AIHDMFTYSQETQHGNITRGLAVGLALINYGR--------QELADDLITKMLASDESLLRY  560 (963)
T ss_dssp             HHHHHTTCCCHH-------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTC--------GGGGHHHHHHHHHCSCHHHHH
T ss_pred             HhhhhcccCCHH-------HHHHHHHHHhccCcHHHHHHHHHHHHhhhCCC--------hHHHHHHHHHHHhCCCHHHHH
Confidence            776533322222       234444444 3557888888888888775432        3468889998876 5777777


Q ss_pred             HHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcC---chHHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHhccCCh
Q 020640          181 DVASAIFNLCITHENKARAVRDGGVSVILKKIMDG---VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCD  257 (323)
Q Consensus       181 ~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~---~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~  257 (323)
                      .++.++..-..+..+..      +++.|+..+.++   .++..|+..|..++..+.        ..++.++.++..+.++
T Consensus       561 gaa~alglAyaGTGn~~------aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~--------e~v~rlv~~L~~~~d~  626 (963)
T 4ady_A          561 GGAFTIALAYAGTGNNS------AVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY--------TTVPRIVQLLSKSHNA  626 (963)
T ss_dssp             HHHHHHHHHTTTSCCHH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC--------SSHHHHTTTGGGCSCH
T ss_pred             HHHHHHHHHhcCCCCHH------HHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH--------HHHHHHHHHHHhcCCH
Confidence            77777765444444432      344566665533   578889998888876542        3467777766655568


Q ss_pred             hHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 020640          258 RNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKR  315 (323)
Q Consensus       258 ~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~  315 (323)
                      .++..|+.+|..++..++.        ..++..|..+.++.++.+++.|..+|..+..
T Consensus       627 ~VR~gAalALGli~aGn~~--------~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~  676 (963)
T 4ady_A          627 HVRCGTAFALGIACAGKGL--------QSAIDVLDPLTKDPVDFVRQAAMIALSMILI  676 (963)
T ss_dssp             HHHHHHHHHHHHHTSSSCC--------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHhccCCCc--------HHHHHHHHHHccCCCHHHHHHHHHHHHHHhc
Confidence            9999999999999988753        2456788888999999999999999987763

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=98.02  E-value=3e-05  Score=66.42  Aligned_cols=187  Identities=10%  Similarity=0.068  Sum_probs=127.3

Q ss_pred             HHHHh-cCCchhHHHHHHHHHH-HhccChhhHHHHhhhcCCHHHHHHhh-cccccCCCCCHHHHHHHHHHHHHhccccc-
Q 020640           36 LLKKM-SATLPDQTEAAKELRL-LTKRMPSFRALFGESHDAIPQLLSPL-SESKCENGINPNLQEDVITTLLNLSIHDN-  111 (323)
Q Consensus        36 Lv~~l-~~~~~~~~~a~~~L~~-l~~~~~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~~~~~~~~a~~~L~~ls~~~~-  111 (323)
                      +-+++ +.++..|..|+..|.. +..+.+.....-.+....+..|...+ +      +.+..++..|+.+|..++..-. 
T Consensus        21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~------D~n~~v~~~A~~al~~la~~l~~   94 (249)
T 2qk1_A           21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQK------DANIQAVALAAQSVELICDKLKT   94 (249)
T ss_dssp             HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHH------CSCHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhcc------CCCHHHHHHHHHHHHHHHHhccc
Confidence            34566 4779999999999999 87543322100001012355666777 5      6789999999999999984321 


Q ss_pred             -hhh-hhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCC-chhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHH
Q 020640          112 -NKK-LVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDS-NKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFN  188 (323)
Q Consensus       112 -~~~-~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~-~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~  188 (323)
                       .-. ....  -+++.++..+++....++..+..++..++..-+ ....-.-...++.|+..|.+.++.++..++.+|..
T Consensus        95 ~~f~~~y~~--~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~  172 (249)
T 2qk1_A           95 PGFSKDYVS--LVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNA  172 (249)
T ss_dssp             TTSCHHHHH--HHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred             ccccHHHHH--HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence             111 2222  267788888888889999999999988875321 11110011367888889998899999999999999


Q ss_pred             hccCCchh-HH---HHhhCchHHHHHHhhcC--chHHHHHHHHHHHhc
Q 020640          189 LCITHENK-AR---AVRDGGVSVILKKIMDG--VHVDELLAILAMLST  230 (323)
Q Consensus       189 L~~~~~~~-~~---i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~  230 (323)
                      +....... ..   .+....++.|.+++.+.  .++..|..+|..++.
T Consensus       173 ~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~  220 (249)
T 2qk1_A          173 SMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK  220 (249)
T ss_dssp             HHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            87655421 12   22135888999999877  689999988888875

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.00  E-value=1.3e-06  Score=66.98  Aligned_cols=118  Identities=18%  Similarity=0.159  Sum_probs=86.6

Q ss_pred             cCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC
Q 020640           72 HDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSAL  151 (323)
Q Consensus        72 ~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~  151 (323)
                      ...++.++.+|+      ++++.++..|+.+|..+..           .. ++.|+.+|+++++.++..++++|.++.. 
T Consensus        11 ~~~~~~l~~~L~------~~~~~vR~~A~~~L~~~~~-----------~~-~~~L~~~L~d~~~~vR~~A~~aL~~~~~-   71 (131)
T 1te4_A           11 SSGLVPRGSHMA------DENKWVRRDVSTALSRMGD-----------EA-FEPLLESLSNEDWRIRGAAAWIIGNFQD-   71 (131)
T ss_dssp             ----------CC------SSCCCSSSSCCSSTTSCSS-----------TT-HHHHHHGGGCSCHHHHHHHHHHHGGGCS-
T ss_pred             cccHHHHHHHhc------CCCHHHHHHHHHHHHHhCc-----------hH-HHHHHHHHcCCCHHHHHHHHHHHHhcCC-
Confidence            456788888888      7788888888887776531           22 6889999999999999999999988752 


Q ss_pred             CCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHH
Q 020640          152 DSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAM  227 (323)
Q Consensus       152 ~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~  227 (323)
                               ...++.|++++.++++.++..++++|.++..          ..+++.|+.++++.  .++..++.+|..
T Consensus        72 ---------~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~  130 (131)
T 1te4_A           72 ---------ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLET  130 (131)
T ss_dssp             ---------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred             ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence                     2368999999999999999999999998752          24678899999865  577778777654

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=97.96  E-value=0.00033  Score=61.56  Aligned_cols=152  Identities=13%  Similarity=0.113  Sum_probs=118.2

Q ss_pred             hHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccc
Q 020640           31 DHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIH  109 (323)
Q Consensus        31 ~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~  109 (323)
                      -.+..+++.|. ++...++.++..|..+-..+..+...|+. .+|+..|+++..      ..+...+.+++.+|.++=.+
T Consensus       118 ~ra~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~-~~GL~~Li~vi~------~~~gN~q~Y~L~AL~~LM~~  190 (339)
T 3dad_A          118 VRVNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVH-SEGLSCLIRVGA------AADHNYQSYILRALGQLMLF  190 (339)
T ss_dssp             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHH-TTHHHHHHHHHT------TSCHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHH-hccHHHHHHHHH------hcChHHHHHHHHHHHHHHhc
Confidence            35667888885 67888999999999944467889999999 999999999998      45789999999999999877


Q ss_pred             cchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCC-chhhhhc-c---------CChHHHHHHhh---hcC
Q 020640          110 DNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDS-NKEVIGK-S---------GALKPLIDLLD---EGH  175 (323)
Q Consensus       110 ~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~-~~~~i~~-~---------g~i~~Lv~lL~---~~~  175 (323)
                      .+....++....++..+..++.+....+.+.|..+|..+..+.+ +...+.+ .         --++.|+.+|.   ..+
T Consensus       191 v~Gm~gvvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D  270 (339)
T 3dad_A          191 VDGMLGVVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGAD  270 (339)
T ss_dssp             HHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCC
T ss_pred             cccccchhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCC
Confidence            77776777655578889999998889999999999999986654 3322221 1         13667788886   457


Q ss_pred             HhHHHHHHHHHHHh
Q 020640          176 QSAMKDVASAIFNL  189 (323)
Q Consensus       176 ~~~~~~al~aL~~L  189 (323)
                      .+++.+|+..|-.+
T Consensus       271 ~elq~~amtLIN~l  284 (339)
T 3dad_A          271 PELLVYTVTLINKT  284 (339)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            77777777665444

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=97.94  E-value=0.00027  Score=63.32  Aligned_cols=208  Identities=8%  Similarity=0.036  Sum_probs=126.2

Q ss_pred             HHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCc
Q 020640           75 IPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSN  154 (323)
Q Consensus        75 i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~  154 (323)
                      +..|.+=++      ++++-++-.|+.+|.++...+     +.+.  +.+.+-..+.+.++.+++.|+-+...|....+ 
T Consensus       106 ~Nsl~kDl~------~~N~~iR~lALRtL~~I~~~~-----m~~~--l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~p-  171 (355)
T 3tjz_B          106 TSSLTKDMT------GKEDSYRGPAVRALCQITDST-----MLQA--IERYMKQAIVDKVPSVSSSALVSSLHLLKCSF-  171 (355)
T ss_dssp             HHHHHHHHH------SSCHHHHHHHHHHHHHHCCTT-----THHH--HHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCH-
T ss_pred             HHHHHhhcC------CCcHhHHHHHHHHHhcCCCHH-----HHHH--HHHHHHHHcCCCCHHHHHHHHHHHHHHhccCH-
Confidence            344555555      778999999999999996433     3332  45667788889999999999999999865432 


Q ss_pred             hhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcCch--HHHHHHHHHHHhcC-
Q 020640          155 KEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDGVH--VDELLAILAMLSTN-  231 (323)
Q Consensus       155 ~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~~~--~~~a~~~L~~l~~~-  231 (323)
                        .+++ +.++.+-+++.+.++.+..+|+.+|+.++..+..        .+..|+..+..+.+  ...-+.++..++.. 
T Consensus       172 --e~v~-~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~--------a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~  240 (355)
T 3tjz_B          172 --DVVK-RWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRL--------AVSKMISKFTRHGLKSPFAYCMMIRVASRQL  240 (355)
T ss_dssp             --HHHH-TTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHH--------HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC-
T ss_pred             --HHHH-HHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchH--------HHHHHHHHHhcCCCcChHHHHHHHHHHHHhc
Confidence              2333 6899999999999999999999999999875421        34455555555422  33334444444442 


Q ss_pred             HHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHH
Q 020640          232 HRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILE  311 (323)
Q Consensus       232 ~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~  311 (323)
                      ++... -.....++.|...+++. ++.+...|++++..+......    .+  ..++..|..++.+.++++|--|...|.
T Consensus       241 ~~d~~-~~~~~~~~~l~~~L~~~-~~aVvyEa~k~I~~l~~~~~~----~~--~~a~~~L~~fLss~d~niryvaLr~L~  312 (355)
T 3tjz_B          241 EDEDG-SRDSPLFDFIESCLRNK-HEMVVYEAASAIVNLPGCSAK----EL--APAVSVLQLFCSSPKAALRYAAVRTLN  312 (355)
T ss_dssp             -----------------CCCCCS-SHHHHHHHHHHHTC-----------------CCCTHHHHHHSSSSSSHHHHHHCC-
T ss_pred             cccch-hhHHHHHHHHHHHHcCC-ChHHHHHHHHHHHhccCCCHH----HH--HHHHHHHHHHHcCCCchHHHHHHHHHH
Confidence            11100 01123455566666644 488888899999888663322    11  345677777888888888888877777


Q ss_pred             HHhc
Q 020640          312 RLKR  315 (323)
Q Consensus       312 ~l~~  315 (323)
                      .+..
T Consensus       313 ~l~~  316 (355)
T 3tjz_B          313 KVAM  316 (355)
T ss_dssp             ----
T ss_pred             HHHH
Confidence            6664

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=97.81  E-value=0.0052  Score=62.03  Aligned_cols=261  Identities=15%  Similarity=0.150  Sum_probs=176.1

Q ss_pred             hHHHHHHHHhcCCchhHHHHHHHHHHHhccChh--hHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhcc
Q 020640           31 DHFLSLLKKMSATLPDQTEAAKELRLLTKRMPS--FRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSI  108 (323)
Q Consensus        31 ~~i~~Lv~~l~~~~~~~~~a~~~L~~l~~~~~~--~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~  108 (323)
                      +.+..|.+.+.+.... +.|+..+..++.....  ..+.+.  .+.++.+++.+.      +....++..|-.++..+..
T Consensus        54 ~~~~~~~~~~~~k~~~-~~a~~~~~~~~~~~~~~~~~e~~~--~~~~~~~~~~~~------dk~~~v~~aa~~~~~~~~~  124 (986)
T 2iw3_A           54 HFFGELAKGIKDKKTA-ANAMQAVAHIANQSNLSPSVEPYI--VQLVPAICTNAG------NKDKEIQSVASETLISIVN  124 (986)
T ss_dssp             HHHHHHHHHHTSHHHH-HHHHHHHHHHTCTTTCCTTTHHHH--HTTHHHHHHHTT------CSSHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHhccCCH-HHHHHHHHHHHHhcCCCCCcccch--HHHHHHHHHHhc------CCchHHHHHHHHHHHHHHH
Confidence            5666677776432122 7888888888854321  111111  135666666655      6677888888777776643


Q ss_pred             ccchhhhhhccCCcHHHHHHHHhcC-CHHHHHHHHHHHHHhcCCCCchhhhhc--cCChHHHHHHhhhcCHhHHHHHHHH
Q 020640          109 HDNNKKLVAETPMVIPLLMDALRSG-TIETRSNAAAALFTLSALDSNKEVIGK--SGALKPLIDLLDEGHQSAMKDVASA  185 (323)
Q Consensus       109 ~~~~~~~i~~~~g~i~~Lv~ll~~~-~~~~~~~a~~~L~~L~~~~~~~~~i~~--~g~i~~Lv~lL~~~~~~~~~~al~a  185 (323)
                      .-. -..+ .  .++|.|+..+++. .=..+..|+.++..|+...  ...+..  ..++|.+.+.+.+..+++...|..+
T Consensus       125 ~~~-~~a~-~--~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~--~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~  198 (986)
T 2iw3_A          125 AVN-PVAI-K--ALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA--KDQVALRMPELIPVLSETMWDTKKEVKAAATAA  198 (986)
T ss_dssp             HSC-GGGH-H--HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred             hCC-HHHH-H--HHHHHHHHHhccccchHHHHHHHHHHHHHHHHh--HHHHHHhccchhcchHhhcccCcHHHHHHHHHH
Confidence            221 1112 1  2688899988765 4688889999999998643  233333  6688888888888899999999999


Q ss_pred             HHHhccCCchhHHHHhhCchHHHHHHhhcCchHHHHHHHHHHHhcCH---HHHHHHHhcCCHHHHHHHHhccCChhHHHH
Q 020640          186 IFNLCITHENKARAVRDGGVSVILKKIMDGVHVDELLAILAMLSTNH---RAVEEIGDLGGVSCMLRIIRESTCDRNKEN  262 (323)
Q Consensus       186 L~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~a~~~L~~l~~~~---~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~  262 (323)
                      +..+|..-+|+.-   ...+|.|++.+.+++-...++..|..-..-.   .-.-.++    +|.|..-|.+.+ ..++++
T Consensus       199 ~~~~~~~~~n~d~---~~~~~~~~~~~~~p~~~~~~~~~l~~~tfv~~v~~~~l~~~----~p~l~r~l~~~~-~~~~r~  270 (986)
T 2iw3_A          199 MTKATETVDNKDI---ERFIPSLIQCIADPTEVPETVHLLGATTFVAEVTPATLSIM----VPLLSRGLNERE-TGIKRK  270 (986)
T ss_dssp             HHHHGGGCCCTTT---GGGHHHHHHHHHCTTHHHHHHHHHTTCCCCSCCCHHHHHHH----HHHHHHHHTSSS-HHHHHH
T ss_pred             HHHHHhcCCCcch---hhhHHHHHHHhcChhhhHHHHHHhhcCeeEeeecchhHHHH----HHHHHhhhccCc-chhhee
Confidence            9999875555432   2478889999988866666666555554421   2222222    566777777544 778999


Q ss_pred             HHHHHHHhcc--cChHhHHHHHhhcccHHHHHHHhhcC-CHHHHHHHHHHHHHHhcc
Q 020640          263 CIAILHTICL--SDRTKWKAMREEESTHGTISKLAQDG-TARAKRKATGILERLKRT  316 (323)
Q Consensus       263 a~~~L~~L~~--~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~~A~~~L~~l~~~  316 (323)
                      ++-++-|+|.  ++|...+.++  ...+|.|-+....- +|++++.|..++..|.+.
T Consensus       271 ~~~~~~n~~~lv~~~~~~~~f~--~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~  325 (986)
T 2iw3_A          271 SAVIIDNMCKLVEDPQVIAPFL--GKLLPGLKSNFATIADPEAREVTLRALKTLRRV  325 (986)
T ss_dssp             HHHHHHHHHTTCCCHHHHHHHH--TTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEcchhhhcCCHHHHhhhh--hhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHh
Confidence            9999999998  4555555665  46777777766544 899999999999988654

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=97.77  E-value=0.00014  Score=65.15  Aligned_cols=239  Identities=13%  Similarity=0.061  Sum_probs=124.1

Q ss_pred             hHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccc
Q 020640           31 DHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIH  109 (323)
Q Consensus        31 ~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~  109 (323)
                      -+++.+.+-+. .++.+|-.|+++|.++..  ++.-.      ...+.+-+.|.      +.++.++..|+-+...|...
T Consensus       104 Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~--~~m~~------~l~~~lk~~L~------d~~pyVRk~A~l~~~kL~~~  169 (355)
T 3tjz_B          104 IVTSSLTKDMTGKEDSYRGPAVRALCQITD--STMLQ------AIERYMKQAIV------DKVPSVSSSALVSSLHLLKC  169 (355)
T ss_dssp             GGHHHHHHHHHSSCHHHHHHHHHHHHHHCC--TTTHH------HHHHHHHHHHT------CSSHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHhhcCCCcHhHHHHHHHHHhcCCC--HHHHH------HHHHHHHHHcC------CCCHHHHHHHHHHHHHHhcc
Confidence            36777777775 668889999999999984  33221      23444666666      78999999999999888654


Q ss_pred             cchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhc---CHhHHHHHHHHH
Q 020640          110 DNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEG---HQSAMKDVASAI  186 (323)
Q Consensus       110 ~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~---~~~~~~~al~aL  186 (323)
                      ...   +++  +++..+-+++.+.++-++.+|..+|..+..++.        ..+..|+.-+..+   ++-.+...++.+
T Consensus       170 ~pe---~v~--~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~--------~a~~kLv~~l~~~~l~~~~~q~~llr~l  236 (355)
T 3tjz_B          170 SFD---VVK--RWVNEAQEAASSDNIMVQYHALGLLYHVRKNDR--------LAVSKMISKFTRHGLKSPFAYCMMIRVA  236 (355)
T ss_dssp             CHH---HHH--TTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCH--------HHHHHHHHHHHSSCCSCHHHHHHHHHHH
T ss_pred             CHH---HHH--HHHHHHHHHhcCCCccHHHHHHHHHHHHHhhch--------HHHHHHHHHHhcCCCcChHHHHHHHHHH
Confidence            332   333  378889999999999999999999999986541        1455666666553   344444555555


Q ss_pred             HHhccCCchhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHhccCChhHHHHHH
Q 020640          187 FNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCI  264 (323)
Q Consensus       187 ~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~  264 (323)
                      ..++..++..   .....++.+...|++.  .+...|+.++..+...+..   .. ..++..|..++.+++ +.+|..|+
T Consensus       237 ~~~~~~d~~~---~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~---~~-~~a~~~L~~fLss~d-~niryvaL  308 (355)
T 3tjz_B          237 SRQLEDEDGS---RDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAK---EL-APAVSVLQLFCSSPK-AALRYAAV  308 (355)
T ss_dssp             TCC--------------------CCCCCSSHHHHHHHHHHHTC---------------CCCTHHHHHHSSS-SSSHHHHH
T ss_pred             HHhccccchh---hHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHH---HH-HHHHHHHHHHHcCCC-chHHHHHH
Confidence            4554433110   1122334455555544  5778888888887653221   22 234566777777554 88999999


Q ss_pred             HHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHH
Q 020640          265 AILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGIL  310 (323)
Q Consensus       265 ~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L  310 (323)
                      ..|..+....|+..      ..+-.-+.+++.+++..+...|...|
T Consensus       309 r~L~~l~~~~P~~v------~~~n~~ie~li~d~n~sI~t~Aittl  348 (355)
T 3tjz_B          309 RTLNKVAMKHPSAV------TACNLDLENLVTDANRSIATLAITTL  348 (355)
T ss_dssp             HCC-------------------------------------------
T ss_pred             HHHHHHHHHCcHHH------HHHHHHHHHHccCCcHhHHHHHHHHh
Confidence            99999999887532      24667788889988888888877655

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=97.65  E-value=0.012  Score=47.04  Aligned_cols=214  Identities=11%  Similarity=0.124  Sum_probs=146.8

Q ss_pred             cCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchhhhhhccCCcHHHHHHHHh-cCCHHHHHHHHHHHHHhcC
Q 020640           72 HDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALR-SGTIETRSNAAAALFTLSA  150 (323)
Q Consensus        72 ~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~-~~~~~~~~~a~~~L~~L~~  150 (323)
                      ...+..++.+|.      ++-..++.+|+.++.+++..-   ....+ + .+..|+.+++ ++..+.-...++++..++.
T Consensus        31 ~~~l~~lI~~LD------DDlwtV~kNAl~vi~~i~~~~---~el~e-p-l~~kL~vm~~ksEaIpltqeIa~a~G~la~   99 (253)
T 2db0_A           31 ESVLKKLIELLD------DDLWTVVKNAISIIMVIAKTR---EDLYE-P-MLKKLFSLLKKSEAIPLTQEIAKAFGQMAK   99 (253)
T ss_dssp             HHHHHHHHHHTT------CSCHHHHHHHHHHHHHHHTTC---GGGHH-H-HHHHHHHHHHHCCSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc------cHHHHHHHhHHHHHHHHHHHh---HHHHH-H-HHHHHHHHHhhcccCchHHHHHHHHhHHHH
Confidence            446788999998      777899999999999987643   22222 2 3555666764 6677777778888888875


Q ss_pred             CCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcCc--hHHHHHHHHHHH
Q 020640          151 LDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDGV--HVDELLAILAML  228 (323)
Q Consensus       151 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~~--~~~~a~~~L~~l  228 (323)
                      .   +..+++ +.+|.+..=.+-+++.++.+...+|..++..++.-..    +++.-+..++.+++  -+-.++..+..+
T Consensus       100 i---~Pe~v~-~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~----~v~rdi~smltskd~~Dkl~aLnFi~al  171 (253)
T 2db0_A          100 E---KPELVK-SMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMA----SIVRDFMSMLSSKNREDKLTALNFIEAM  171 (253)
T ss_dssp             H---CHHHHH-HHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHH----HHHHHHHHHTSCSSHHHHHHHHHHHHTC
T ss_pred             h---CHHHHH-hhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHH----HHHHHHHHHhcCCChHHHHHHHHHHHHH
Confidence            2   223333 2566666666668999999999999998876643222    24445777777663  344455555444


Q ss_pred             hcCHHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHH
Q 020640          229 STNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATG  308 (323)
Q Consensus       229 ~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~  308 (323)
                      ..+  +-+.+.  -.++.|..+|.+.+ ..++..|+.+|.+++..++. .+.++      ..-++-+.+.++.++.+...
T Consensus       172 Gen--~~~yv~--PfLprL~aLL~D~d-eiVRaSaVEtL~~lA~~npk-lRkii------~~kl~e~~D~S~lv~~~V~e  239 (253)
T 2db0_A          172 GEN--SFKYVN--PFLPRIINLLHDGD-EIVRASAVEALVHLATLNDK-LRKVV------IKRLEELNDTSSLVNKTVKE  239 (253)
T ss_dssp             CTT--THHHHG--GGHHHHHGGGGCSS-HHHHHHHHHHHHHHHTSCHH-HHHHH------HHHHHHCCCSCHHHHHHHHH
T ss_pred             hcc--CccccC--cchHHHHHHHcCcc-hhhhHHHHHHHHHHHHcCHH-HHHHH------HHHHHHhcCcHHHHHHHHHH
Confidence            432  111121  35899999999765 88999999999999999975 45543      33455567778999998888


Q ss_pred             HHHHHhcc
Q 020640          309 ILERLKRT  316 (323)
Q Consensus       309 ~L~~l~~~  316 (323)
                      .|..+.-.
T Consensus       240 gL~rl~l~  247 (253)
T 2db0_A          240 GISRLLLL  247 (253)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHHH
Confidence            88877643

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=97.63  E-value=0.028  Score=51.85  Aligned_cols=232  Identities=15%  Similarity=0.152  Sum_probs=144.1

Q ss_pred             cCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccc---hhhhh-hccCCcHHHHHHHHhcCCHHH-HHHHHHHHH
Q 020640           72 HDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDN---NKKLV-AETPMVIPLLMDALRSGTIET-RSNAAAALF  146 (323)
Q Consensus        72 ~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~---~~~~i-~~~~g~i~~Lv~ll~~~~~~~-~~~a~~~L~  146 (323)
                      ..++..++++|..     ..+.++..+.+..+.-+-..+.   .+..+ .+.+.....+.......+... ...++.++.
T Consensus        76 ~~~~~~~l~lL~~-----~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~  150 (480)
T 1ho8_A           76 GKTLIPLIHLLST-----SDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVS  150 (480)
T ss_dssp             STTHHHHHHHHHS-----CCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHhh-----cChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHH
Confidence            5578889999985     4578888888888877655544   44344 333322222333222334433 445555545


Q ss_pred             HhcCCCCchhhhhccCChHH------HHHHhhh-cCHhHHHHHHHHHHHhccCCchhHHHHhhC--chHHHHHHhhc---
Q 020640          147 TLSALDSNKEVIGKSGALKP------LIDLLDE-GHQSAMKDVASAIFNLCITHENKARAVRDG--GVSVILKKIMD---  214 (323)
Q Consensus       147 ~L~~~~~~~~~i~~~g~i~~------Lv~lL~~-~~~~~~~~al~aL~~L~~~~~~~~~i~~~g--~v~~Lv~ll~~---  214 (323)
                      .++.....     +...++.      ++..|.. .+...+.-++.+|..|...++.|..+.+.+  .++.++.+++.   
T Consensus       151 ll~~~~~~-----~~~~l~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~  225 (480)
T 1ho8_A          151 LLVQNGLH-----NVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATD  225 (480)
T ss_dssp             HHTSTTTC-----CHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC
T ss_pred             HHhccCCc-----cHhHHHHHhhhHHHHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhc
Confidence            55422211     1223333      3334444 234556679999999999999999887653  46777655441   


Q ss_pred             ------------C----chHHHHHHHHHHHhcCHHHHHHHHhcCCH--HHHHHHHhccCChhHHHHHHHHHHHhcccCh-
Q 020640          215 ------------G----VHVDELLAILAMLSTNHRAVEEIGDLGGV--SCMLRIIRESTCDRNKENCIAILHTICLSDR-  275 (323)
Q Consensus       215 ------------~----~~~~~a~~~L~~l~~~~~~~~~i~~~g~i--~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~-  275 (323)
                                  +    .++..++-+++-|+..++..+.+...+..  ..|+.+++....+++.+-++.+|.|+....+ 
T Consensus       226 ~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~  305 (480)
T 1ho8_A          226 SQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVK  305 (480)
T ss_dssp             -------------CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSST
T ss_pred             cccccccccccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccch
Confidence                        1    24678899999999999988888877754  7788888876668899999999999998763 


Q ss_pred             ---HhHHHHHhhcccHHHHHHHhhcC--CHHHHHHHHHHHHHH
Q 020640          276 ---TKWKAMREEESTHGTISKLAQDG--TARAKRKATGILERL  313 (323)
Q Consensus       276 ---~~~~~~~~~~~~i~~L~~ll~~~--~~~~~~~A~~~L~~l  313 (323)
                         ....+++...++++.|..+....  ++++.+--..+...|
T Consensus       306 ~~~~~~~~~~~~~~~l~~l~~L~~rk~~Dedl~edl~~L~e~L  348 (480)
T 1ho8_A          306 QHKKVIKQLLLLGNALPTVQSLSERKYSDEELRQDISNLKEIL  348 (480)
T ss_dssp             THHHHHHHHHHHHCHHHHHHHHHSSCCSSHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHccchHHHHHHhhCCCCcHHHHHHHHHHHHHH
Confidence               22333443345555555454433  666655544444443

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=97.58  E-value=0.0099  Score=59.56  Aligned_cols=236  Identities=12%  Similarity=0.076  Sum_probs=148.6

Q ss_pred             hHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccc
Q 020640           31 DHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIH  109 (323)
Q Consensus        31 ~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~  109 (323)
                      ++++.|...+. ++...+..|...|..+-.++.+        ..++..|+..+.+     ..+..+++.++..|..+...
T Consensus       472 ev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn--------~~ai~~LL~~~~e-----~~~e~vrR~aalgLGll~~g  538 (963)
T 4ady_A          472 EVYEALKEVLYNDSATSGEAAALGMGLCMLGTGK--------PEAIHDMFTYSQE-----TQHGNITRGLAVGLALINYG  538 (963)
T ss_dssp             HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCC--------HHHHHHHHHHHHH-----CSCHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCC--------HHHHHHHHHHHhc-----cCcHHHHHHHHHHHHhhhCC
Confidence            46777777775 3344555677777666433321        2245567766653     44678888888888877543


Q ss_pred             cchhhhhhccCCcHHHHHHHHh-cCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhh-cCHhHHHHHHHHHH
Q 020640          110 DNNKKLVAETPMVIPLLMDALR-SGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDE-GHQSAMKDVASAIF  187 (323)
Q Consensus       110 ~~~~~~i~~~~g~i~~Lv~ll~-~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~al~aL~  187 (323)
                      ..         ..++.+++.|. +.++-++..++.++.--.....|.      .+|+.|+..+.+ .+..++..|..+|.
T Consensus       539 ~~---------e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~------~aIq~LL~~~~~d~~d~VRraAViaLG  603 (963)
T 4ady_A          539 RQ---------ELADDLITKMLASDESLLRYGGAFTIALAYAGTGNN------SAVKRLLHVAVSDSNDDVRRAAVIALG  603 (963)
T ss_dssp             CG---------GGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCH------HHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred             Ch---------HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCH------HHHHHHHHHhccCCcHHHHHHHHHHHH
Confidence            31         24667777776 467788887777776544333332      357778887665 47789999999999


Q ss_pred             HhccCCchhHHHHhhCchHHHHHHhhc-C--chHHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHhccCChhHHHHHH
Q 020640          188 NLCITHENKARAVRDGGVSVILKKIMD-G--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCI  264 (323)
Q Consensus       188 ~L~~~~~~~~~i~~~g~v~~Lv~ll~~-~--~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~  264 (323)
                      .+...++        ..++.++.+|.+ +  .++..+..+|..++......      .++..|..+..+.+ +.++..|+
T Consensus       604 lI~~g~~--------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~------~aid~L~~L~~D~d-~~Vrq~Ai  668 (963)
T 4ady_A          604 FVLLRDY--------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ------SAIDVLDPLTKDPV-DFVRQAAM  668 (963)
T ss_dssp             HHTSSSC--------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCH------HHHHHHHHHHTCSS-HHHHHHHH
T ss_pred             hhccCCH--------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcH------HHHHHHHHHccCCC-HHHHHHHH
Confidence            8876654        245666665553 3  57888999999888743221      23556667777654 99999999


Q ss_pred             HHHHHhcccChHhHHHHHhhcccHHHHHHHhhc--CCHHHHHHHHHHHH
Q 020640          265 AILHTICLSDRTKWKAMREEESTHGTISKLAQD--GTARAKRKATGILE  311 (323)
Q Consensus       265 ~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~~~~~A~~~L~  311 (323)
                      .+|..+...+.+....-+  .+....|.+...+  .++.++-.|..++-
T Consensus       669 ~ALG~Ig~gtnna~~~rv--a~~l~~L~~~~~dk~~d~~~~fga~iAqG  715 (963)
T 4ady_A          669 IALSMILIQQTEKLNPQV--ADINKNFLSVITNKHQEGLAKFGACVAQG  715 (963)
T ss_dssp             HHHHHHSTTCCTTTCTTH--HHHHHHHHHHHHCSSSCHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCccccchHH--HHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence            999999887644311111  1344445555543  34555555444443

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=97.19  E-value=0.037  Score=55.93  Aligned_cols=222  Identities=11%  Similarity=0.130  Sum_probs=147.9

Q ss_pred             hHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccc
Q 020640           31 DHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIH  109 (323)
Q Consensus        31 ~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~  109 (323)
                      +.++.+++... ....+|..|..++..+...-+.+.  +   ...+|.|++.|.+     +...+.+..|+.++..|+..
T Consensus        95 ~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a--~---~~~~~~~~~~~~~-----~~kw~~k~~~l~~~~~~~~~  164 (986)
T 2iw3_A           95 QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVA--I---KALLPHLTNAIVE-----TNKWQEKIAILAAFSAMVDA  164 (986)
T ss_dssp             TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGG--H---HHHHHHHHHHHHH-----CCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHH--H---HHHHHHHHHHhcc-----ccchHHHHHHHHHHHHHHHH
Confidence            45677777774 346677666666655554332221  1   3468889999974     33588999999999999864


Q ss_pred             cchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHHh
Q 020640          110 DNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNL  189 (323)
Q Consensus       110 ~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L  189 (323)
                      ...+-. ..-+.++|.+...+-+..+++...|..++..++.--+|+..   ...+|.|++.+.+++.  .-.+...|..-
T Consensus       165 ~~~~~~-~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~---~~~~~~~~~~~~~p~~--~~~~~~~l~~~  238 (986)
T 2iw3_A          165 AKDQVA-LRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI---ERFIPSLIQCIADPTE--VPETVHLLGAT  238 (986)
T ss_dssp             SHHHHH-HHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT---GGGHHHHHHHHHCTTH--HHHHHHHHTTC
T ss_pred             hHHHHH-HhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch---hhhHHHHHHHhcChhh--hHHHHHHhhcC
Confidence            422111 11233677777777778899999999999999875555543   3479999999998743  44455555544


Q ss_pred             ccCCchhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhc---CHHHHHHHHhcCCHHHHHHHHhccCChhHHHHHH
Q 020640          190 CITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLST---NHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCI  264 (323)
Q Consensus       190 ~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~---~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~  264 (323)
                      ++-.+.-...+.. .+|.|.+-|.+.  ..+.+++-++-|||.   +|.....|+- ..+|.|-+....-.++++++.|-
T Consensus       239 tfv~~v~~~~l~~-~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~-~l~p~~~~~~~~~~~pe~r~~~~  316 (986)
T 2iw3_A          239 TFVAEVTPATLSI-MVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLG-KLLPGLKSNFATIADPEAREVTL  316 (986)
T ss_dssp             CCCSCCCHHHHHH-HHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHT-TTHHHHHHHTTTCCSHHHHHHHH
T ss_pred             eeEeeecchhHHH-HHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhh-hhhhHHHHHhhccCCHHHHHHHH
Confidence            4444433333332 567777777765  578899999999999   3444444442 45777777776545588888887


Q ss_pred             HHHHHh
Q 020640          265 AILHTI  270 (323)
Q Consensus       265 ~~L~~L  270 (323)
                      .++..|
T Consensus       317 ~a~~~l  322 (986)
T 2iw3_A          317 RALKTL  322 (986)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            777777

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=97.09  E-value=0.013  Score=59.60  Aligned_cols=259  Identities=12%  Similarity=0.068  Sum_probs=146.8

Q ss_pred             hHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchhh-hhh---ccCC
Q 020640           46 DQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKK-LVA---ETPM  121 (323)
Q Consensus        46 ~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~-~i~---~~~g  121 (323)
                      .|..|...|..++..-+   ..+..  -.++.+.+.+.......+++...++.|+.++..++..-.... .+.   ....
T Consensus       377 ~R~aa~~~L~~l~~~~~---~~v~~--~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~  451 (960)
T 1wa5_C          377 RRRACTDFLKELKEKNE---VLVTN--IFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLN  451 (960)
T ss_dssp             HHHHHHHHHHHHHHHCH---HHHHH--HHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCC
T ss_pred             cHHHHHHHHHHHHHHcc---hhHHH--HHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCccccccccc
Confidence            46667777777775432   22221  123333344432110003467889999999999875321111 000   0001


Q ss_pred             cHHH----HHHHHhcC---CHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHHhccCCc
Q 020640          122 VIPL----LMDALRSG---TIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHE  194 (323)
Q Consensus       122 ~i~~----Lv~ll~~~---~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~  194 (323)
                      +.+.    ++..+.++   ++-++..+++++..++..- ... .. ..+++.+++.|.+++..++..|+.+|.+++...+
T Consensus       452 l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~-~~~-~l-~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~  528 (960)
T 1wa5_C          452 VVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL-TKA-QL-IELMPILATFLQTDEYVVYTYAAITIEKILTIRE  528 (960)
T ss_dssp             HHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS-CHH-HH-HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBS
T ss_pred             HHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC-CHH-HH-HHHHHHHHHHhCCCChhHHHHHHHHHHHHHhccc
Confidence            2332    33345666   8999999999999998642 122 11 3367888888888889999999999999987422


Q ss_pred             ---------hhHHHHh--hCchHHHHHHhhcCc-------hHHHHHHHHHHHhcC--HHHHHHHHhcCCHHHHHHHHhc-
Q 020640          195 ---------NKARAVR--DGGVSVILKKIMDGV-------HVDELLAILAMLSTN--HRAVEEIGDLGGVSCMLRIIRE-  253 (323)
Q Consensus       195 ---------~~~~i~~--~g~v~~Lv~ll~~~~-------~~~~a~~~L~~l~~~--~~~~~~i~~~g~i~~Lv~ll~~-  253 (323)
                               .+..+..  ...++.|+.++....       ..+.+..+|..++..  ++....+.  ..++.|+..+.. 
T Consensus       529 ~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~--~l~~~L~~~l~~~  606 (960)
T 1wa5_C          529 SNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFP--QLLAQFIEIVTIM  606 (960)
T ss_dssp             CSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHH--HHHHHHHHHHHHH
T ss_pred             ccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHH
Confidence                     1222321  135556666666531       345566666665441  21111111  134555555532 


Q ss_pred             ---cCChhHHHHHHHHHHHhccc-ChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhcc
Q 020640          254 ---STCDRNKENCIAILHTICLS-DRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRT  316 (323)
Q Consensus       254 ---~~~~~~~~~a~~~L~~L~~~-~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~  316 (323)
                         .++......++.++..+... .++....+  ...+++.+..++..........+..++..+...
T Consensus       607 ~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~--~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~  671 (960)
T 1wa5_C          607 AKNPSNPRFTHYTFESIGAILNYTQRQNLPLL--VDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQ  671 (960)
T ss_dssp             TTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHH--HHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHH
T ss_pred             HhCCCCcHHHHHHHHHHHHHHhcCCcchHHHH--HHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHh
Confidence               33345666678888887775 33334444  346788888888777666666677777666543

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=96.56  E-value=0.098  Score=44.03  Aligned_cols=143  Identities=10%  Similarity=0.087  Sum_probs=101.3

Q ss_pred             CHhHHHHHHHHHHHhccCCchhHHHH-h-hCchHHHHHHhh-------cCch-------HHHHHHHHHHHhcCHHHHHHH
Q 020640          175 HQSAMKDVASAIFNLCITHENKARAV-R-DGGVSVILKKIM-------DGVH-------VDELLAILAMLSTNHRAVEEI  238 (323)
Q Consensus       175 ~~~~~~~al~aL~~L~~~~~~~~~i~-~-~g~v~~Lv~ll~-------~~~~-------~~~a~~~L~~l~~~~~~~~~i  238 (323)
                      +++.++.|+.-|..=-...++-..++ . .|.+..|++=+-       .+.+       .-+|+..|..+|++|+.|..|
T Consensus        14 ~p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAshpetr~~F   93 (268)
T 2fv2_A           14 SPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASHPETRSAF   93 (268)
T ss_dssp             STTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHHCTTTHHHH
T ss_pred             CchhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHcCcchhhHH
Confidence            44556666655543222222333332 3 376666655322       1211       356778888999999999999


Q ss_pred             HhcCCHHHHHHHHhccCC----hhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHh
Q 020640          239 GDLGGVSCMLRIIRESTC----DRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLK  314 (323)
Q Consensus       239 ~~~g~i~~Lv~ll~~~~~----~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~  314 (323)
                      +++...-.|-.++...+.    +.++-.+.+++..|...++...-.++.+.++++..++.+..|++..|.-|..++..+-
T Consensus        94 l~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKIL  173 (268)
T 2fv2_A           94 LAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKIL  173 (268)
T ss_dssp             HHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred             HHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHHh
Confidence            999987777778865332    4578899999999998776555566667899999999999999999999999998876


Q ss_pred             cch
Q 020640          315 RTV  317 (323)
Q Consensus       315 ~~~  317 (323)
                      -..
T Consensus       174 ~dd  176 (268)
T 2fv2_A          174 LDD  176 (268)
T ss_dssp             HSH
T ss_pred             ccc
Confidence            443

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=96.25  E-value=0.88  Score=46.08  Aligned_cols=207  Identities=8%  Similarity=0.046  Sum_probs=114.9

Q ss_pred             HHHHHHHHHHHhccccchhhhhhccCCcHHHHHHHHhc-----CCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHH
Q 020640           95 LQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRS-----GTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLID  169 (323)
Q Consensus        95 ~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~-----~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~  169 (323)
                      .+..+..+|..++..-.  ..+...  +.+.+-..+.+     .+-..++.++.++..++..-....    ...++.++.
T Consensus       437 ~R~~~~~~l~~~~~~~~--~~~l~~--~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~----~~~l~~l~~  508 (971)
T 2x1g_F          437 YRQDISDTFMYCYDVLN--DYILEI--LAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEE----KRQIPRLMR  508 (971)
T ss_dssp             HHHHHHHHHHHHHTTCT--THHHHH--HHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC----------CHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHh--HHHHHH--HHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhh----hHHHHHHHH
Confidence            45556666666553221  112111  23333334433     455678889999999875432111    123444554


Q ss_pred             Hh---h--hcCHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcCchHHHHHHHHHHHhcCHHHHHHHHh--cC
Q 020640          170 LL---D--EGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDGVHVDELLAILAMLSTNHRAVEEIGD--LG  242 (323)
Q Consensus       170 lL---~--~~~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~a~~~L~~l~~~~~~~~~i~~--~g  242 (323)
                      ++   .  +.++.++..++++|..++..-........ .+++.|+..|. ..++..|+.++.+++.  +.+..+..  ..
T Consensus       509 ~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~-~vl~~l~~~l~-~~v~~~A~~al~~l~~--~~~~~l~p~~~~  584 (971)
T 2x1g_F          509 VLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIP-PAINLLVRGLN-SSMSAQATLGLKELCR--DCQLQLKPYADP  584 (971)
T ss_dssp             HHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHH-HHHHHHHHHHH-SSCHHHHHHHHHHHHH--HCHHHHHHHHHH
T ss_pred             HHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHH-HHHHHHHHHhC-hHHHHHHHHHHHHHHH--HHHHhccccHHH
Confidence            43   2  23788999999999988753221111111 25566666664 7789999999999995  33444432  24


Q ss_pred             CHHHHHHHHhccC-ChhHHHHHHHHHHHhcccCh-HhHHHHHhhcccHHHHHH----HhhcC--CHHHHHHHHHHHHHHh
Q 020640          243 GVSCMLRIIREST-CDRNKENCIAILHTICLSDR-TKWKAMREEESTHGTISK----LAQDG--TARAKRKATGILERLK  314 (323)
Q Consensus       243 ~i~~Lv~ll~~~~-~~~~~~~a~~~L~~L~~~~~-~~~~~~~~~~~~i~~L~~----ll~~~--~~~~~~~A~~~L~~l~  314 (323)
                      .++.+..++..+. +...+..+..++..++..-+ +.....+.  ..++++.+    +++..  ++..+......|..|+
T Consensus       585 ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~--~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~  662 (971)
T 2x1g_F          585 LLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLD--IIVSPCFEELQAICQADSKTPAARIRTIFRLNMIS  662 (971)
T ss_dssp             HHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHH--HHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHH--HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHH
Confidence            6777777777532 36788888888888876432 22223322  34444444    33333  4445566666666665


Q ss_pred             c
Q 020640          315 R  315 (323)
Q Consensus       315 ~  315 (323)
                      .
T Consensus       663 ~  663 (971)
T 2x1g_F          663 T  663 (971)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=96.24  E-value=0.14  Score=44.68  Aligned_cols=137  Identities=11%  Similarity=-0.002  Sum_probs=89.2

Q ss_pred             CHhHHHHHHHHHHHhccCCchhHHHHhh--CchHHHHHHhhcC--chHHHHHHHHHHHhcCHHHHHHHH-hcCCHHHHHH
Q 020640          175 HQSAMKDVASAIFNLCITHENKARAVRD--GGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIG-DLGGVSCMLR  249 (323)
Q Consensus       175 ~~~~~~~al~aL~~L~~~~~~~~~i~~~--g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~~~~~~~i~-~~g~i~~Lv~  249 (323)
                      .+..+..+++++.|+-.+...+..+...  ..++.+...+.+.  .++..+..++.|++..-.....+- ...++..+..
T Consensus       161 ~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~  240 (304)
T 3ebb_A          161 KPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLIST  240 (304)
T ss_dssp             CHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHH
Confidence            4567889999999998888888777653  2333333333322  578888899999998411000000 0114555566


Q ss_pred             HHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhc-CCHHHHHHHHHHHHH
Q 020640          250 IIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQD-GTARAKRKATGILER  312 (323)
Q Consensus       250 ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~~A~~~L~~  312 (323)
                      +++...+.+....++.+|.+|...+++ ..++.+.-++...+-+.... ..+++.+.+..+|..
T Consensus       241 il~~~~d~EalyR~LvALGtL~~~~~~-~~~lak~l~~~~~v~~~~~~~~~~kv~~~~~~~~~~  303 (304)
T 3ebb_A          241 ILEVVQDLEATFRLLVALGTLISDDSN-AVQLAKSLGVDSQIKKYSSVSEPAKVSECCRFILNL  303 (304)
T ss_dssp             HHTTCCCHHHHHHHHHHHHHHHTTCHH-HHHHHHHTTHHHHGGGGGGCCSSHHHHHHHHHHHTT
T ss_pred             HHhccCCHHHHHHHHHHHHHHHhCChh-HHHHHHHcCHHHHHHHHHhCCCchhHHHHHHHHHHh
Confidence            666545588899999999999987654 56666555666666666655 378888888777653

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=96.15  E-value=0.11  Score=44.59  Aligned_cols=183  Identities=15%  Similarity=0.133  Sum_probs=113.5

Q ss_pred             HHHHh-cCCchhHHHHHHHHHHHhccChhhH---HHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccc
Q 020640           36 LLKKM-SATLPDQTEAAKELRLLTKRMPSFR---ALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDN  111 (323)
Q Consensus        36 Lv~~l-~~~~~~~~~a~~~L~~l~~~~~~~~---~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~  111 (323)
                      +-+.| +.++..|.+|+..|..+....+...   ..+.......+.+-..+.      +.|..++..++.++..+...-.
T Consensus        14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~------DsN~~v~~~al~~l~~~~~~~~   87 (278)
T 4ffb_C           14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYIT------DSNVVAQEQAIVALNSLIDAFA   87 (278)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTT------CSSHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhc------cchHHHHHHHHHHHHHHHHHhh
Confidence            45677 4789999999999998875433211   011110123445556666      7799999999999987754221


Q ss_pred             ---h-hhhh-hccCCcHHHHHH-HHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHH
Q 020640          112 ---N-KKLV-AETPMVIPLLMD-ALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASA  185 (323)
Q Consensus       112 ---~-~~~i-~~~~g~i~~Lv~-ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~a  185 (323)
                         . +... ...+.+++.|+. .+.+....++..+..++..+.........     +++.++..+...++.++..++..
T Consensus        88 ~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~-----~~e~l~~~l~~Knpkv~~~~l~~  162 (278)
T 4ffb_C           88 SSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQ-----SVELVIPFFEKKLPKLIAAAANC  162 (278)
T ss_dssp             ---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHH-----HHHHHGGGGGCSCHHHHHHHHHH
T ss_pred             hhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHH-----HHHHHHHHHhccCHHHHHHHHHH
Confidence               1 1111 111225666664 35677888888888888777543322222     34666777788899999999999


Q ss_pred             HHHhccCC--c--hhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhc
Q 020640          186 IFNLCITH--E--NKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLST  230 (323)
Q Consensus       186 L~~L~~~~--~--~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~  230 (323)
                      |..+....  .  +....+. ..++.+..++.+.  .+|..|..++..+-.
T Consensus       163 l~~~l~~fg~~~~~~k~~l~-~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~  212 (278)
T 4ffb_C          163 VYELMAAFGLTNVNVQTFLP-ELLKHVPQLAGHGDRNVRSQTMNLIVEIYK  212 (278)
T ss_dssp             HHHHHHHHTTTTCCHHHHHH-HHGGGHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhCCCcCCchhHHH-HHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence            98874321  1  1111122 2445567777765  689999888887766

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=96.00  E-value=0.18  Score=42.40  Aligned_cols=138  Identities=13%  Similarity=0.105  Sum_probs=100.4

Q ss_pred             HHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcC-------chHHHHHHHHHHHhc--CHHHHHHHHhcCCHHHHHHH
Q 020640          180 KDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG-------VHVDELLAILAMLST--NHRAVEEIGDLGGVSCMLRI  250 (323)
Q Consensus       180 ~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~-------~~~~~a~~~L~~l~~--~~~~~~~i~~~g~i~~Lv~l  250 (323)
                      -+|+..|..++.+++.|..++++...--|..+|+..       .++-.+++++..|.+  +++.-..+.+.++++..++.
T Consensus        74 cnaLaLlQcvAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLri  153 (268)
T 2fv2_A           74 CNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRI  153 (268)
T ss_dssp             HHHHHHHHHHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHHHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHH
Confidence            346667788899999999999998777788888743       367889999999997  46888888999999999999


Q ss_pred             HhccCChhHHHHHHHHHHHhcccChHhHHHHHhh-------cccHHHHHH-HhhcCCHHHHHHHHHHHHHHhcchhh
Q 020640          251 IRESTCDRNKENCIAILHTICLSDRTKWKAMREE-------ESTHGTISK-LAQDGTARAKRKATGILERLKRTVNL  319 (323)
Q Consensus       251 l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~-------~~~i~~L~~-ll~~~~~~~~~~A~~~L~~l~~~~~~  319 (323)
                      ++.|+ +-.|.-|..++..+-.++.+ ...+...       ..++...+. +.+..+++.-+...++--.|++.+.+
T Consensus       154 me~Gs-elSKtvAtfIlqKIL~dd~G-L~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~ra  228 (268)
T 2fv2_A          154 MESGS-ELSKTVATFILQKILLDDTG-LAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRA  228 (268)
T ss_dssp             HHHSC-HHHHHHHHHHHHHHHHSHHH-HHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHH
T ss_pred             Hhhcc-HHHHHHHHHHHHHHhccchh-HHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHH
Confidence            99886 88899999999988776654 2222111       122322332 33455777777777666666665543

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=95.91  E-value=1.1  Score=45.47  Aligned_cols=214  Identities=8%  Similarity=0.025  Sum_probs=117.2

Q ss_pred             HHHHHHHHHHHHhccccchhhhhhccCCcHHHHHHHHh------cCCHHHHHHHHHHHHHhcCCCCchhhhhc-----cC
Q 020640           94 NLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALR------SGTIETRSNAAAALFTLSALDSNKEVIGK-----SG  162 (323)
Q Consensus        94 ~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~------~~~~~~~~~a~~~L~~L~~~~~~~~~i~~-----~g  162 (323)
                      ..+..|..+|..++..-.  ..+...  +++.+...+.      +.+-..++.|..++..++.....+..-..     ..
T Consensus       376 s~R~aa~~~L~~l~~~~~--~~v~~~--~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~  451 (960)
T 1wa5_C          376 TRRRACTDFLKELKEKNE--VLVTNI--FLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLN  451 (960)
T ss_dssp             CHHHHHHHHHHHHHHHCH--HHHHHH--HHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCC
T ss_pred             CcHHHHHHHHHHHHHHcc--hhHHHH--HHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCccccccccc
Confidence            466677777777765432  222221  3444445554      44557788899999999753221111000     02


Q ss_pred             ChHH----HHHHhhhc---CHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcCH-
Q 020640          163 ALKP----LIDLLDEG---HQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNH-  232 (323)
Q Consensus       163 ~i~~----Lv~lL~~~---~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~~-  232 (323)
                      ..+.    ++..+.++   ++.++..++++|..++..-.  ..... ..++.++..|.+.  .++..|+.+|.+++... 
T Consensus       452 l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~--~~~l~-~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~  528 (960)
T 1wa5_C          452 VVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT--KAQLI-ELMPILATFLQTDEYVVYTYAAITIEKILTIRE  528 (960)
T ss_dssp             HHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC--HHHHH-HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBS
T ss_pred             HHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCC--HHHHH-HHHHHHHHHhCCCChhHHHHHHHHHHHHHhccc
Confidence            2232    33345555   78899999999999987532  12222 3677788888766  47899999999998741 


Q ss_pred             -------H-HHHHHHh--cCCHHHHHHHHhccCC--hh--HHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHh---
Q 020640          233 -------R-AVEEIGD--LGGVSCMLRIIRESTC--DR--NKENCIAILHTICLSDRTKWKAMREEESTHGTISKLA---  295 (323)
Q Consensus       233 -------~-~~~~i~~--~g~i~~Lv~ll~~~~~--~~--~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll---  295 (323)
                             + .+..+..  ..+++.|+.++....+  .+  ..+.+..++..++....+......  ...++.|...+   
T Consensus       529 ~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~--~~l~~~L~~~l~~~  606 (960)
T 1wa5_C          529 SNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLF--PQLLAQFIEIVTIM  606 (960)
T ss_dssp             CSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGH--HHHHHHHHHHHHHH
T ss_pred             ccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHH--HHHHHHHHHHHHHH
Confidence                   1 2333322  2456777777775310  11  235566666665443222122221  12344444443   


Q ss_pred             -hcC-CHHHHHHHHHHHHHHhcc
Q 020640          296 -QDG-TARAKRKATGILERLKRT  316 (323)
Q Consensus       296 -~~~-~~~~~~~A~~~L~~l~~~  316 (323)
                       ++. ++........+|..+...
T Consensus       607 ~~~~~~~~~~~~~~e~l~~l~~~  629 (960)
T 1wa5_C          607 AKNPSNPRFTHYTFESIGAILNY  629 (960)
T ss_dssp             TTSCCCHHHHHHHHHHHHHHHHT
T ss_pred             HhCCCCcHHHHHHHHHHHHHHhc
Confidence             222 556666666666666543

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=95.72  E-value=0.1  Score=44.57  Aligned_cols=180  Identities=12%  Similarity=0.052  Sum_probs=115.9

Q ss_pred             cCCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhcc---ccchhhhhh
Q 020640           41 SATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSI---HDNNKKLVA  117 (323)
Q Consensus        41 ~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~---~~~~~~~i~  117 (323)
                      +.|...+..|+..|......+++   .+..   .++.+++.+.-...  +.+..+...++.+|..+..   ..+++-.-.
T Consensus        57 s~d~k~~~~ale~L~~~l~~~~~---~~~~---~lDll~kw~~lr~~--d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~  128 (266)
T 2of3_A           57 HKDFKQHLAALDSLVRLADTSPR---SLLS---NSDLLLKWCTLRFF--ETNPAALIKVLELCKVIVELIRDTETPMSQE  128 (266)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHCHH---HHHH---THHHHHHHHHHHTT--SCCHHHHHHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred             CCCHHHHHHHHHHHHHHhhhChH---HHHH---HHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHHHHHHHhccccchHH
Confidence            45677788899999888754442   2222   24444443321001  5688899999998877632   122222221


Q ss_pred             ccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHHhccCCchhH
Q 020640          118 ETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKA  197 (323)
Q Consensus       118 ~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~  197 (323)
                      +..-++|.|+.-+.+..+.++..+-.++..+...      .-...+.+.+++-+++.+..++..++..+..+-...... 
T Consensus       129 ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v------~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~-  201 (266)
T 2of3_A          129 EVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDV------VGPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS-  201 (266)
T ss_dssp             HHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH------HCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG-
T ss_pred             HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHH------CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC-
Confidence            2223688888888888888999888888777531      111336677888888889999999999988874432211 


Q ss_pred             HHHhhCch---HHHHHHhhcC--chHHHHHHHHHHHhc--CHHHHHHH
Q 020640          198 RAVRDGGV---SVILKKIMDG--VHVDELLAILAMLST--NHRAVEEI  238 (323)
Q Consensus       198 ~i~~~g~v---~~Lv~ll~~~--~~~~~a~~~L~~l~~--~~~~~~~i  238 (323)
                         ...++   +.+..++.+.  .++..|+.++..+-.  ++..++.+
T Consensus       202 ---~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v~k~l  246 (266)
T 2of3_A          202 ---PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQMWKAA  246 (266)
T ss_dssp             ---GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred             ---ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence               23477   8899999876  688989888876655  34444443

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=95.72  E-value=0.97  Score=39.66  Aligned_cols=194  Identities=8%  Similarity=0.027  Sum_probs=141.7

Q ss_pred             CcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC-Cchhhhhc--cCChHHHHHHhhh--cCHhHHHHHHHHHHHhccCCch
Q 020640          121 MVIPLLMDALRSGTIETRSNAAAALFTLSALD-SNKEVIGK--SGALKPLIDLLDE--GHQSAMKDVASAIFNLCITHEN  195 (323)
Q Consensus       121 g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~-~~~~~i~~--~g~i~~Lv~lL~~--~~~~~~~~al~aL~~L~~~~~~  195 (323)
                      +.+..|+..|..=+-+.++.+..+..++.... +++...++  ..- +.++..|-.  +++++...+-..|+....+...
T Consensus        78 dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~-peil~~L~~gYe~~diAl~~G~mLRecir~e~l  156 (341)
T 1upk_A           78 GLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQ-QNILFMLLKGYESPEIALNCGIMLRECIRHEPL  156 (341)
T ss_dssp             SHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTC-THHHHHHHHGGGSTTTHHHHHHHHHHHHTSHHH
T ss_pred             CHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcC-HHHHHHHHHhhccchhHhHHHHHHHHHHHhHHH
Confidence            47888888888889999999999999986543 22222222  112 333333333  3677888888889888888888


Q ss_pred             hHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhc-CHHHHHHHHhcC---CHHHHHHHHhccCChhHHHHHHHHHHH
Q 020640          196 KARAVRDGGVSVILKKIMDG--VHVDELLAILAMLST-NHRAVEEIGDLG---GVSCMLRIIRESTCDRNKENCIAILHT  269 (323)
Q Consensus       196 ~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~-~~~~~~~i~~~g---~i~~Lv~ll~~~~~~~~~~~a~~~L~~  269 (323)
                      ...++..+.+-.+.+.+..+  ++...|..++..+-. +......+....   ....+-.++.++ +--+++.++..|..
T Consensus       157 a~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~-NYVTkRQSlKLLge  235 (341)
T 1upk_A          157 AKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSE-NYVTKRQSLKLLGE  235 (341)
T ss_dssp             HHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCS-SHHHHHHHHHHHHH
T ss_pred             HHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCC-cchhHHHHHHHHHH
Confidence            88888888888888888876  677778888876654 565555666543   577777888854 47789999999999


Q ss_pred             hcccChH--hHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhcc
Q 020640          270 ICLSDRT--KWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRT  316 (323)
Q Consensus       270 L~~~~~~--~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~  316 (323)
                      +-.+..+  ....-+.+..-+..++.++++.+..++-.|-.+.+.+...
T Consensus       236 lLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVAN  284 (341)
T 1upk_A          236 LLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVAN  284 (341)
T ss_dssp             HHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHC
T ss_pred             HHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeC
Confidence            9887643  2233344667888899999999999999998888877654

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=95.47  E-value=0.63  Score=40.82  Aligned_cols=214  Identities=11%  Similarity=0.082  Sum_probs=143.9

Q ss_pred             hHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhh-cCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhcc
Q 020640           31 DHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGES-HDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSI  108 (323)
Q Consensus        31 ~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~-~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~  108 (323)
                      +.+..|+..|. =+.+.|..+.....++.+.....+...++- ..- |.++..|-.+    -+++++--.+=..|+.+..
T Consensus        78 dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~-peil~~L~~g----Ye~~diAl~~G~mLRecir  152 (341)
T 1upk_A           78 GLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQ-QNILFMLLKG----YESPEIALNCGIMLRECIR  152 (341)
T ss_dssp             SHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTC-THHHHHHHHG----GGSTTTHHHHHHHHHHHHT
T ss_pred             CHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcC-HHHHHHHHHh----hccchhHhHHHHHHHHHHH
Confidence            45555555553 356678888888888887665443222110 001 2333333222    3356666677777888888


Q ss_pred             ccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhc-CCCCchhhhhc---cCChHHHHHHhhhcCHhHHHHHHH
Q 020640          109 HDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLS-ALDSNKEVIGK---SGALKPLIDLLDEGHQSAMKDVAS  184 (323)
Q Consensus       109 ~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~-~~~~~~~~i~~---~g~i~~Lv~lL~~~~~~~~~~al~  184 (323)
                      ++.-.+.+..++ .+-.+....+.++-++...|..++..|- .+.........   .......-++|.+++=-++..++.
T Consensus       153 ~e~la~~iL~~~-~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlK  231 (341)
T 1upk_A          153 HEPLAKIILWSE-QFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLK  231 (341)
T ss_dssp             SHHHHHHHHHSG-GGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred             hHHHHHHHhccH-HHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHH
Confidence            877666666665 5667889999999999999999999984 44433333332   235667778899999899999999


Q ss_pred             HHHHhccCCchhHHHHh----hCchHHHHHHhhcC--chHHHHHHHHHHHhcC----HHHHHHHHhcCCHHHHHHHHh
Q 020640          185 AIFNLCITHENKARAVR----DGGVSVILKKIMDG--VHVDELLAILAMLSTN----HRAVEEIGDLGGVSCMLRIIR  252 (323)
Q Consensus       185 aL~~L~~~~~~~~~i~~----~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~----~~~~~~i~~~g~i~~Lv~ll~  252 (323)
                      .|..|-.+..|-..+..    ..-+..++.+|++.  .++..|.-++--...+    ++....++.+.  ..|+.++.
T Consensus       232 LLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~~Nr--~kLl~fl~  307 (341)
T 1upk_A          232 LLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQ--AKLIEFLS  307 (341)
T ss_dssp             HHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTH--HHHHHHHH
T ss_pred             HHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCChHHHHHHHHHH--HHHHHHHH
Confidence            99999888877666543    25677888899877  6888898888777665    46666666553  44444444

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=95.38  E-value=0.47  Score=47.96  Aligned_cols=174  Identities=9%  Similarity=-0.015  Sum_probs=107.2

Q ss_pred             cCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhh---hcCHhHHHHHHHHHHHhccCCchhHHHHhhCchHHH
Q 020640          132 SGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLD---EGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVI  208 (323)
Q Consensus       132 ~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~---~~~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~L  208 (323)
                      +.+-..++.++.++..++..-...    ....++.++..+.   ++++.++..+++++..++..-......+. .+++.+
T Consensus       460 ~~~w~~~eaal~al~~i~~~~~~~----~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~-~vl~~l  534 (963)
T 2x19_B          460 PYSWQHTEALLYGFQSIAETIDVN----YSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVMIN-SVLPLV  534 (963)
T ss_dssp             SCCHHHHHHHHHHHHHHTTSCCSS----CCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHHT-TTHHHH
T ss_pred             CCchHHHHHHHHHHHHHHhhcCch----hhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHHHH-HHHHHH
Confidence            346677888999999987543210    1234455555442   24678999999999988754222223333 588888


Q ss_pred             HHHhhcCchHHHHHHHHHHHhcCHHHHHHHHh--cCCHHHHHHHHhccC-ChhHHHHHHHHHHHhcccCh-HhHHHHHhh
Q 020640          209 LKKIMDGVHVDELLAILAMLSTNHRAVEEIGD--LGGVSCMLRIIREST-CDRNKENCIAILHTICLSDR-TKWKAMREE  284 (323)
Q Consensus       209 v~ll~~~~~~~~a~~~L~~l~~~~~~~~~i~~--~g~i~~Lv~ll~~~~-~~~~~~~a~~~L~~L~~~~~-~~~~~~~~~  284 (323)
                      +..|.+..++..|+.++.+++.  +.+..+..  ...++.|..++..+. +...+..+..++..+....+ +.....+  
T Consensus       535 ~~~l~~~~V~~~A~~al~~l~~--~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~--  610 (963)
T 2x19_B          535 LHALGNPELSVSSVSTLKKICR--ECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNL--  610 (963)
T ss_dssp             HHHTTCGGGHHHHHHHHHHHHH--HTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHH--
T ss_pred             HHHhCCchHHHHHHHHHHHHHH--HHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHH--
Confidence            8888777889999999999995  22333321  134555566666422 36788888999998876442 3333443  


Q ss_pred             cccHHHHHHHhh----cC-CHHHHHHHHHHHHHHh
Q 020640          285 ESTHGTISKLAQ----DG-TARAKRKATGILERLK  314 (323)
Q Consensus       285 ~~~i~~L~~ll~----~~-~~~~~~~A~~~L~~l~  314 (323)
                      ...++++...+.    .. +++.+......+..|+
T Consensus       611 ~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~  645 (963)
T 2x19_B          611 HSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLS  645 (963)
T ss_dssp             HHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            245655555443    22 5666665555555443

>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*

Probab=94.99  E-value=0.65  Score=41.05  Aligned_cols=130  Identities=10%  Similarity=0.043  Sum_probs=92.4

Q ss_pred             HHHHHHHHHhccccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhh-cC
Q 020640           97 EDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDE-GH  175 (323)
Q Consensus        97 ~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~-~~  175 (323)
                      ..+...|.-|-.+.+.-.-+++.+| +..+...+.-++.++....++.|...+.....+..-. ...+|.++..+.. ++
T Consensus       261 tR~FDLL~LLmHdSnAIDGFVk~DG-v~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t~L-~e~LPFi~~~i~~h~e  338 (619)
T 3c2g_A          261 IRTFDLLGLLLHDSDAIDGFVRSDG-VGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKTPL-ENILPFLLRLIEIHPD  338 (619)
T ss_dssp             HHHHHHHHHHCCSHHHHHHHHHTTH-HHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTSCC-TTHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHhcccccccceeeccc-ceeEEEEeecCCcHHHHhhhheeeeecchHHHhhccc-cccchHHHHHhccCCC
Confidence            3344444444444445778888887 8888888889999999999999998875443222111 4578888888875 68


Q ss_pred             HhHHHHHHHHHHHhccCCc-hhHHHHhhCchHHHHHHhhcC---------chHHHHHHHHHHH
Q 020640          176 QSAMKDVASAIFNLCITHE-NKARAVRDGGVSVILKKIMDG---------VHVDELLAILAML  228 (323)
Q Consensus       176 ~~~~~~al~aL~~L~~~~~-~~~~i~~~g~v~~Lv~ll~~~---------~~~~~a~~~L~~l  228 (323)
                      .++.....+.|.|...+.. .+...+..|+++.|-..+...         .-+..+|++++|-
T Consensus       339 DdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~  401 (619)
T 3c2g_A          339 DEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNC  401 (619)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHH
T ss_pred             cceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHH
Confidence            8899999999999998885 455557889999998877632         1245566666554

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=94.85  E-value=0.98  Score=40.70  Aligned_cols=162  Identities=21%  Similarity=0.241  Sum_probs=106.6

Q ss_pred             HHHHHHHHhccChhh-HHHHhhhcCCHHHHHHhhccccc-----CCCCCHHHHHHHHHHHHHhccccchhhhhhccCCcH
Q 020640           50 AAKELRLLTKRMPSF-RALFGESHDAIPQLLSPLSESKC-----ENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVI  123 (323)
Q Consensus        50 a~~~L~~l~~~~~~~-~~~i~~~~g~i~~Lv~lL~~~~~-----~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i  123 (323)
                      .+..|+..-+.++.. ...|.  .+|+..|+++|..-..     ....+...+...+.+|..+-........+...+..+
T Consensus        87 ~L~sL~v~Lrt~~~sWV~~F~--~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i  164 (383)
T 3eg5_B           87 CLESLRVSLTSHPVSWVQTFG--AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGI  164 (383)
T ss_dssp             HHHHHHHHHHHSCHHHHHHHH--HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHH
T ss_pred             HHHHHHHHHhhCccHHHHHHH--HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHH
Confidence            455555444444433 45664  5679999999853110     002355788888999999877777777788878889


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhcCCCC--c-hhhh----------hccCChHHHHHHhhh-cCHhHHHHHHHHHHHh
Q 020640          124 PLLMDALRSGTIETRSNAAAALFTLSALDS--N-KEVI----------GKSGALKPLIDLLDE-GHQSAMKDVASAIFNL  189 (323)
Q Consensus       124 ~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~--~-~~~i----------~~~g~i~~Lv~lL~~-~~~~~~~~al~aL~~L  189 (323)
                      ..|+..+.+.++.++..++.+|..+|..++  + ...+          .+..-...+++.|+. .+.+.+..++..+-.+
T Consensus       165 ~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~l  244 (383)
T 3eg5_B          165 LLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINAL  244 (383)
T ss_dssp             HHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHH
Confidence            999999999999999999999999987654  2 2222          234557778888876 4667777777766666


Q ss_pred             ccCCc---hhHH----HHhhCchHHHHHHhhc
Q 020640          190 CITHE---NKAR----AVRDGGVSVILKKIMD  214 (323)
Q Consensus       190 ~~~~~---~~~~----i~~~g~v~~Lv~ll~~  214 (323)
                      ....+   .|..    +... |+..++.-|+.
T Consensus       245 i~~~~dl~~R~~lR~ef~~~-Gl~~il~~lr~  275 (383)
T 3eg5_B          245 ITPAEELDFRVHIRSELMRL-GLHQVLQELRE  275 (383)
T ss_dssp             HTTCCCHHHHHHHHHHHHHT-THHHHHHHHTT
T ss_pred             HcCCCCHHHHHHHHHHHHHC-ChHHHHHHHhc
Confidence            55443   2333    3344 45555555664

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=94.81  E-value=0.39  Score=41.89  Aligned_cols=165  Identities=18%  Similarity=0.091  Sum_probs=96.9

Q ss_pred             hhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHH-hhcccccCCCCCHHHHHHHHHHHHHhccccchhhhhhccC-Cc
Q 020640           45 PDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLS-PLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETP-MV  122 (323)
Q Consensus        45 ~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~-lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~-g~  122 (323)
                      +.+..++..++-+.. .+.....+.+ ...-..++. ++.....  +..+..+..+++++.|+..+...+..+.... .+
T Consensus       117 ~~~fPvLDLlRl~~l-~p~~~~~~~~-~~~~~~l~~~l~~~~~~--~~~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~i  192 (304)
T 3ebb_A          117 DIVFPALDILRLSIK-HPSVNENFCN-EKEGAQFSSHLINLLNP--KGKPANQLLALRTFCNCFVGQAGQKLMMSQRESL  192 (304)
T ss_dssp             TTCHHHHHHHHHHTT-SHHHHHHHHS-TTTHHHHHHHHHHTTCT--TSCHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHH
T ss_pred             HhHHHHHHHHHHHHc-CccHHHHhhc-cccchHHHHHHHHhcCC--CCChHHHHHHHHHHHHccCCchhHHHHHHHHHHH
Confidence            345566677776664 4544455544 333333442 2221111  3456778999999999988887777766521 13


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhh-ccCChHHHHHHhhh-cCHhHHHHHHHHHHHhccCCchhHHHH
Q 020640          123 IPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIG-KSGALKPLIDLLDE-GHQSAMKDVASAIFNLCITHENKARAV  200 (323)
Q Consensus       123 i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~-~~g~i~~Lv~lL~~-~~~~~~~~al~aL~~L~~~~~~~~~i~  200 (323)
                      ++.+...+.+.+..++..++.++.|++.........- ...++..+..++.. .+.+....++-+|.+|...+.....+.
T Consensus       193 l~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvALGtL~~~~~~~~~la  272 (304)
T 3ebb_A          193 MSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVALGTLISDDSNAVQLA  272 (304)
T ss_dssp             HHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhCChhHHHHH
Confidence            3333444445688999999999999974311000010 11134444455543 488999999999999998766555555


Q ss_pred             hh-CchHHHHHHhh
Q 020640          201 RD-GGVSVILKKIM  213 (323)
Q Consensus       201 ~~-g~v~~Lv~ll~  213 (323)
                      +. |....+-++.+
T Consensus       273 k~l~~~~~v~~~~~  286 (304)
T 3ebb_A          273 KSLGVDSQIKKYSS  286 (304)
T ss_dssp             HHTTHHHHGGGGGG
T ss_pred             HHcCHHHHHHHHHh
Confidence            54 44443333333

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=94.56  E-value=1.4  Score=44.69  Aligned_cols=211  Identities=14%  Similarity=0.063  Sum_probs=118.4

Q ss_pred             CCHHHHHHHHHHHHHhccccchhhhhhccCCcHHHHHHHH---h--cCCHHHHHHHHHHHHHhcCCCCchhhhhccCChH
Q 020640           91 INPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDAL---R--SGTIETRSNAAAALFTLSALDSNKEVIGKSGALK  165 (323)
Q Consensus        91 ~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll---~--~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~  165 (323)
                      .+...++.++.++..++..-....    . ..++.++.++   .  +.++.++..+++++..++..-....... ..+++
T Consensus       476 ~~w~~~eaal~~l~~iae~~~~~~----~-~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l-~~vl~  549 (971)
T 2x1g_F          476 THWTKLEACIYSFQSVAEHFGGEE----K-RQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYI-PPAIN  549 (971)
T ss_dssp             TCCHHHHHHHHHHHHTTTC-----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CH-HHHHH
T ss_pred             CcHHHHHHHHHHHHHHHhhcChhh----h-HHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHH-HHHHH
Confidence            467789999999999876433211    1 1344455444   3  2488999999999999874321111111 23567


Q ss_pred             HHHHHhhhcCHhHHHHHHHHHHHhccCCchhHHHHh--hCchHHHHHHhhcC----chHHHHHHHHHHHhcC--HHHHHH
Q 020640          166 PLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVR--DGGVSVILKKIMDG----VHVDELLAILAMLSTN--HRAVEE  237 (323)
Q Consensus       166 ~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~i~~--~g~v~~Lv~ll~~~----~~~~~a~~~L~~l~~~--~~~~~~  237 (323)
                      .|+..+ +  +.++..|+.++.+++...  +..+.-  ...+..+..++..+    ..+.....++..++..  ++.+..
T Consensus       550 ~l~~~l-~--~~v~~~A~~al~~l~~~~--~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~  624 (971)
T 2x1g_F          550 LLVRGL-N--SSMSAQATLGLKELCRDC--QLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPK  624 (971)
T ss_dssp             HHHHHH-H--SSCHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHH
T ss_pred             HHHHHh-C--hHHHHHHHHHHHHHHHHH--HHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHH
Confidence            777777 2  689999999999999543  233322  14555666677663    3566667777766552  233222


Q ss_pred             HHhcCCHHHHHH----HHhccC-ChhHHHHHHHHHHHhcccC----------------hHhHHHHHhhcccHHHHHHHhh
Q 020640          238 IGDLGGVSCMLR----IIREST-CDRNKENCIAILHTICLSD----------------RTKWKAMREEESTHGTISKLAQ  296 (323)
Q Consensus       238 i~~~g~i~~Lv~----ll~~~~-~~~~~~~a~~~L~~L~~~~----------------~~~~~~~~~~~~~i~~L~~ll~  296 (323)
                      ..+ ..++.++.    +++... ++..+......+..|+..-                ++......  ..+++.+..++.
T Consensus       625 ~~~-~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~i~~~l~~~l~  701 (971)
T 2x1g_F          625 YLD-IIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVM--QRTMPIFKRIAE  701 (971)
T ss_dssp             HHH-HHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHH--HTTHHHHHHHHH
T ss_pred             HHH-HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHH--HHHHHHHHHHHH
Confidence            222 22344443    333221 2333444444444443210                01112222  357777777775


Q ss_pred             c--CCHHHHHHHHHHHHHHhc
Q 020640          297 D--GTARAKRKATGILERLKR  315 (323)
Q Consensus       297 ~--~~~~~~~~A~~~L~~l~~  315 (323)
                      .  .++.+.+.+.+++..+..
T Consensus       702 ~~~~~~~v~e~~~~~~~~~~~  722 (971)
T 2x1g_F          702 MWVEEIDVLEAACSAMKHAIT  722 (971)
T ss_dssp             HTTTCHHHHHHHHHHHHHHHH
T ss_pred             hccccHHHHHHHHHHHHHHHH
Confidence            4  377999999999988664

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=94.48  E-value=0.22  Score=46.86  Aligned_cols=247  Identities=11%  Similarity=0.076  Sum_probs=148.8

Q ss_pred             HHHHHHHHh-cCCchhHHHHHHHHHHHhccChhhHHHHhh-hcCCHHHHHHhh--ccccc--CCCCCHHHHHHHHHHHHH
Q 020640           32 HFLSLLKKM-SATLPDQTEAAKELRLLTKRMPSFRALFGE-SHDAIPQLLSPL--SESKC--ENGINPNLQEDVITTLLN  105 (323)
Q Consensus        32 ~i~~Lv~~l-~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~-~~g~i~~Lv~lL--~~~~~--~~~~~~~~~~~a~~~L~~  105 (323)
                      ....|+..| +..+++|--|+..|+.+.+........... +....-.|+-+|  .+..+  .|.--..+++.++++|..
T Consensus       175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGa  254 (800)
T 3oc3_A          175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSR  254 (800)
T ss_dssp             TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHH
Confidence            556666666 577999999999999988654321100011 011112222222  22111  001235689999999998


Q ss_pred             hccccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhc-cCChHHHHHHhhhcCHhHHHHHHH
Q 020640          106 LSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGK-SGALKPLIDLLDEGHQSAMKDVAS  184 (323)
Q Consensus       106 ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~al~  184 (323)
                      + .+-+..     . .++..++..+..+.=+++-.+.-.|..+      ...+.+ .++++.++..|.+.+++++..|+.
T Consensus       255 L-~hLp~e-----~-~IL~qLV~~l~~~~WEVRHGGLLGLKYL------~DLL~~Ld~Vv~aVL~GL~D~DDDVRAVAAe  321 (800)
T 3oc3_A          255 I-YPLIGP-----N-DIIEQLVGFLDSGDWQVQFSGLIALGYL------KEFVEDKDGLCRKLVSLLSSPDEDIKLLSAE  321 (800)
T ss_dssp             H-TTTSCS-----C-CHHHHHTTGGGCSCHHHHHHHHHHHHHT------GGGCCCHHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred             H-HhCChh-----H-HHHHHHHhhcCCCCeeehhhhHHHHHHH------HHHHHHHHHHHHHHHhhcCCcccHHHHHHHH
Confidence            8 543332     1 2455555544566667777888888888      222222 567888888888889999999999


Q ss_pred             HHHHhccCCchhHHHHhhCchHHHHHHhhc--C--chHHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHhccCChhHH
Q 020640          185 AIFNLCITHENKARAVRDGGVSVILKKIMD--G--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNK  260 (323)
Q Consensus       185 aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~--~--~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~  260 (323)
                      +|.-++ ..+....+     +..+-..|.+  +  .........|+.|+..+..  .-.....+|.|..++++.- ..++
T Consensus       322 tLiPIA-~p~~l~~L-----L~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~--a~~dp~LVPRL~PFLRHtI-TSVR  392 (800)
T 3oc3_A          322 LLCHFP-ITDSLDLV-----LEKCWKNIESEELISVSKTSNLSLLTKIYRENPE--LSIPPERLKDIFPCFTSPV-PEVR  392 (800)
T ss_dssp             HHTTSC-CSSTHHHH-----HHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT--CCCCSGGGGGTGGGGTCSS-HHHH
T ss_pred             Hhhhhc-chhhHHHH-----HHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc--cccChHHHHHHHhhhcCCc-HHHH
Confidence            999888 22222222     2334444443  2  3456667788888876531  1111256888999999654 8899


Q ss_pred             HHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHH
Q 020640          261 ENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILE  311 (323)
Q Consensus       261 ~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~  311 (323)
                      ..++.+|..+.  .....+         ....+++-..++++.+.+..+-+
T Consensus       393 ~AVL~TL~tfL--~~~~LR---------LIFQNILLE~neeIl~lS~~VWk  432 (800)
T 3oc3_A          393 TSILNMVKNLS--EESIDF---------LVAEVVLIEEKDEIREMAIKLLK  432 (800)
T ss_dssp             HHHHHHTTTCC--CHHHHH---------HHHHHHHHCSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH--hhhHHH---------HHHHHHHhCCcHHHHHHHHHHHH
Confidence            99999998887  211121         22334566678888877766654

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=94.47  E-value=1.3  Score=37.74  Aligned_cols=184  Identities=9%  Similarity=0.088  Sum_probs=112.0

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHhcCCCC---chhhhh-c-cCChHHHHHHhhhcCHhHHHHHHHHHHHhccCCc----hh
Q 020640          126 LMDALRSGTIETRSNAAAALFTLSALDS---NKEVIG-K-SGALKPLIDLLDEGHQSAMKDVASAIFNLCITHE----NK  196 (323)
Q Consensus       126 Lv~ll~~~~~~~~~~a~~~L~~L~~~~~---~~~~i~-~-~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~----~~  196 (323)
                      +-.-|.+.+=..+..+...|..+.....   ...... . ....+.+-+.+.+.+..+...++.+|..++....    .+
T Consensus        14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~   93 (278)
T 4ffb_C           14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN   93 (278)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred             HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence            4456677777777788877777643211   111111 1 2245556667888899999999999988865331    11


Q ss_pred             HH--HHhhCchHHHHHH-hhcC--chHHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHhc
Q 020640          197 AR--AVRDGGVSVILKK-IMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTIC  271 (323)
Q Consensus       197 ~~--i~~~g~v~~Lv~l-l~~~--~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~  271 (323)
                      ..  ..-...++.|+.- +.+.  .++..+..++..++........     +++.+...+... +++++..++..|..+.
T Consensus        94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~-----~~e~l~~~l~~K-npkv~~~~l~~l~~~l  167 (278)
T 4ffb_C           94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQ-----SVELVIPFFEKK-LPKLIAAAANCVYELM  167 (278)
T ss_dssp             HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHH-----HHHHHGGGGGCS-CHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHH-----HHHHHHHHHhcc-CHHHHHHHHHHHHHHH
Confidence            11  1223466777765 5555  4677777777666542111111     134444555644 5999999999988876


Q ss_pred             ccCh-H--hHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhcch
Q 020640          272 LSDR-T--KWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTV  317 (323)
Q Consensus       272 ~~~~-~--~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~  317 (323)
                      .... .  ..+..+  ..+++.+..++.+.++.++..|..++-.+.++-
T Consensus       168 ~~fg~~~~~~k~~l--~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~  214 (278)
T 4ffb_C          168 AAFGLTNVNVQTFL--PELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVT  214 (278)
T ss_dssp             HHHTTTTCCHHHHH--HHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC-
T ss_pred             HHhCCCcCCchhHH--HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence            5321 1  112222  246677888899999999999999998887643

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=94.33  E-value=0.44  Score=43.87  Aligned_cols=131  Identities=17%  Similarity=0.225  Sum_probs=93.3

Q ss_pred             hHHHHHHHHhcCCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhcccc
Q 020640           31 DHFLSLLKKMSATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHD  110 (323)
Q Consensus        31 ~~i~~Lv~~l~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~  110 (323)
                      .....++...+++...++-|...|.++.++-|+.+      ..++..+++++.      +++..++..|...|-.++.+ 
T Consensus        29 ~~y~~Il~~~kg~~k~K~LaaQ~I~kffk~FP~l~------~~Ai~a~lDLcE------Ded~~IR~qaik~Lp~~ck~-   95 (507)
T 3u0r_A           29 DAYQVILDGVKGGTKEKRLAAQFIPKFFKHFPELA------DSAINAQLDLCE------DEDVSIRRQAIKELPQFATG-   95 (507)
T ss_dssp             HHHHHHHHGGGSCHHHHHHHHHHHHHHGGGCGGGH------HHHHHHHHHHHT------CSSHHHHHHHHHHGGGGCCT-
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhH------HHHHHHHHHHHh------cccHHHHHHHHHhhHHHhhh-
Confidence            34445555556778888899999999999888865      345677999999      88999999999999999987 


Q ss_pred             chhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHHH
Q 020640          111 NNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIF  187 (323)
Q Consensus       111 ~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~  187 (323)
                      ++...      +...|+++|+.+++.-....-.+|..|-..+.       .+.+..|+.-+..+++.+++.++..|.
T Consensus        96 ~~i~k------iaDvL~QlLqtdd~~E~~~V~~sL~sllk~Dp-------k~tl~~lf~~i~~~~e~~Rer~lkFi~  159 (507)
T 3u0r_A           96 ENLPR------VADILTQLLQTDDSAEFNLVNNALLSIFKMDA-------KGTLGGLFSQILQGEDIVRERAIKFLS  159 (507)
T ss_dssp             TCHHH------HHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             hhhhh------HHHHHHHHHhccchHHHHHHHHHHHHHHhcCh-------HHHHHHHHHHHcccchHHHHHHHHHHH
Confidence            43222      45678899998887777767677666643221       234555555555556666766666663

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=94.04  E-value=0.27  Score=46.36  Aligned_cols=203  Identities=10%  Similarity=0.062  Sum_probs=131.1

Q ss_pred             CCCHHHHHHHHHHHHHhccccc---hhhhhhccCCcHHHHHHHH---hcC-------CHHHHHHHHHHHHHhcCCCCchh
Q 020640           90 GINPNLQEDVITTLLNLSIHDN---NKKLVAETPMVIPLLMDAL---RSG-------TIETRSNAAAALFTLSALDSNKE  156 (323)
Q Consensus        90 ~~~~~~~~~a~~~L~~ls~~~~---~~~~i~~~~g~i~~Lv~ll---~~~-------~~~~~~~a~~~L~~L~~~~~~~~  156 (323)
                      ++..+++..|+..|+.+-....   .+..-... .+.-.++.++   +.+       -.++++.|+.+|..+ .+-+.. 
T Consensus       185 dp~WEiRHGAALGLREILR~hG~GAGR~~~~N~-DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGaL-~hLp~e-  261 (800)
T 3oc3_A          185 SYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDS-KLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSRI-YPLIGP-  261 (800)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHCC----CCCCCCT-THHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHHH-TTTSCS-
T ss_pred             CcchhhhhHHHHHHHHHHHHhccCCceeccccH-HHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHHH-HhCChh-
Confidence            6789999999999998754332   11111111 2233344433   111       368999999999999 654433 


Q ss_pred             hhhccCChHHHHHHhhhcCHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcCHHH
Q 020640          157 VIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRA  234 (323)
Q Consensus       157 ~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~~~~  234 (323)
                          ..++..|+..+..+..+++..++-.|..+   .+-... . .++++.++..|.+.  +++..|+.+|..++ .++.
T Consensus       262 ----~~IL~qLV~~l~~~~WEVRHGGLLGLKYL---~DLL~~-L-d~Vv~aVL~GL~D~DDDVRAVAAetLiPIA-~p~~  331 (800)
T 3oc3_A          262 ----NDIIEQLVGFLDSGDWQVQFSGLIALGYL---KEFVED-K-DGLCRKLVSLLSSPDEDIKLLSAELLCHFP-ITDS  331 (800)
T ss_dssp             ----CCHHHHHTTGGGCSCHHHHHHHHHHHHHT---GGGCCC-H-HHHHHHHHHHTTCSSHHHHHHHHHHHTTSC-CSST
T ss_pred             ----HHHHHHHHhhcCCCCeeehhhhHHHHHHH---HHHHHH-H-HHHHHHHHhhcCCcccHHHHHHHHHhhhhc-chhh
Confidence                34666676666777899999999999998   111111 1 25677788888765  78999999999998 2221


Q ss_pred             HHHHHhcCCHHHHHHHHhccCC-hhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 020640          235 VEEIGDLGGVSCMLRIIRESTC-DRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERL  313 (323)
Q Consensus       235 ~~~i~~~g~i~~Lv~ll~~~~~-~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l  313 (323)
                      ...     ++..+-+.|.+-++ ..........|..|+..++.    .......+|.|..++++.-..++..+..+|..+
T Consensus       332 l~~-----LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~----a~~dp~LVPRL~PFLRHtITSVR~AVL~TL~tf  402 (800)
T 3oc3_A          332 LDL-----VLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE----LSIPPERLKDIFPCFTSPVPEVRTSILNMVKNL  402 (800)
T ss_dssp             HHH-----HHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT----CCCCSGGGGGTGGGGTCSSHHHHHHHHHHTTTC
T ss_pred             HHH-----HHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc----cccChHHHHHHHhhhcCCcHHHHHHHHHHHHHH
Confidence            111     23344444443221 22355667788888887642    112357899999999999999999988887665


Q ss_pred             h
Q 020640          314 K  314 (323)
Q Consensus       314 ~  314 (323)
                      .
T Consensus       403 L  403 (800)
T 3oc3_A          403 S  403 (800)
T ss_dssp             C
T ss_pred             H
Confidence            4

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=93.83  E-value=0.8  Score=41.27  Aligned_cols=146  Identities=17%  Similarity=0.200  Sum_probs=95.3

Q ss_pred             hhhhhhccCCcHHHHHHHHhc-----------CCHHHHHHHHHHHHHhcCCCCchhhhhc-cCChHHHHHHhhhcCHhHH
Q 020640          112 NKKLVAETPMVIPLLMDALRS-----------GTIETRSNAAAALFTLSALDSNKEVIGK-SGALKPLIDLLDEGHQSAM  179 (323)
Q Consensus       112 ~~~~i~~~~g~i~~Lv~ll~~-----------~~~~~~~~a~~~L~~L~~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~  179 (323)
                      ....+. .+| +..|+.+|..           .+...+..++++|..+.-+......+.. ..++..|+..|.+..+.++
T Consensus       102 WV~~F~-~~G-l~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~  179 (383)
T 3eg5_B          102 WVQTFG-AEG-LASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMM  179 (383)
T ss_dssp             HHHHHH-HHH-HHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHH
T ss_pred             HHHHHH-Hcc-HHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCchHHH
Confidence            455665 456 7788888742           1346777889999998776666666666 7889999999999999999


Q ss_pred             HHHHHHHHHhccCCc--h-hHHHHhh----------CchHHHHHHhhcC---chHHHHHHHHHHHhcCH-------HHHH
Q 020640          180 KDVASAIFNLCITHE--N-KARAVRD----------GGVSVILKKIMDG---VHVDELLAILAMLSTNH-------RAVE  236 (323)
Q Consensus       180 ~~al~aL~~L~~~~~--~-~~~i~~~----------g~v~~Lv~ll~~~---~~~~~a~~~L~~l~~~~-------~~~~  236 (323)
                      ..++..|..+|..++  + ...++++          .-...++..|+++   +.+..++..+-.+...+       ..|.
T Consensus       180 ~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~  259 (383)
T 3eg5_B          180 IDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRS  259 (383)
T ss_dssp             HHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            999999999998764  3 4444322          3456677777764   33444444444444432       3444


Q ss_pred             HHHhcCCHHHHHHHHhccCChhHH
Q 020640          237 EIGDLGGVSCMLRIIRESTCDRNK  260 (323)
Q Consensus       237 ~i~~~g~i~~Lv~ll~~~~~~~~~  260 (323)
                      ++...| +..++.-++...++.+.
T Consensus       260 ef~~~G-l~~il~~lr~~~~~~L~  282 (383)
T 3eg5_B          260 ELMRLG-LHQVLQELREIENEDMK  282 (383)
T ss_dssp             HHHHTT-HHHHHHHHTTSCCHHHH
T ss_pred             HHHHCC-hHHHHHHHhcCCChhHH
Confidence            445556 55555557654434443

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=93.63  E-value=0.66  Score=38.69  Aligned_cols=127  Identities=17%  Similarity=0.209  Sum_probs=82.0

Q ss_pred             HHHHHHHHHHHHHhcCCCCchhhhhc-cCChHHHHHHhhhcCHhHHHHHHHHHHHhccCCc--h-hHHHHhh--------
Q 020640          135 IETRSNAAAALFTLSALDSNKEVIGK-SGALKPLIDLLDEGHQSAMKDVASAIFNLCITHE--N-KARAVRD--------  202 (323)
Q Consensus       135 ~~~~~~a~~~L~~L~~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~--~-~~~i~~~--------  202 (323)
                      .+.+..++.+|..+..+......+.. .+++..|+..|.++++.++..++..|..+|..++  + ...++++        
T Consensus        68 ~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~  147 (233)
T 2f31_A           68 SRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMD  147 (233)
T ss_dssp             HHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhC
Confidence            46677888899888766666666666 7789999999999999999999999999988764  4 4444322        


Q ss_pred             --CchHHHHHHhhcC---chHHHHHHHHHHHhcCH-------HHHHHHHhcCCHHHHHHHHhccCChhHHHH
Q 020640          203 --GGVSVILKKIMDG---VHVDELLAILAMLSTNH-------RAVEEIGDLGGVSCMLRIIRESTCDRNKEN  262 (323)
Q Consensus       203 --g~v~~Lv~ll~~~---~~~~~a~~~L~~l~~~~-------~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~  262 (323)
                        .-...+++.+++.   +.+..++..+-.+...+       ..|.++...| +..++.-++...++.+..+
T Consensus       148 e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~G-l~~il~~l~~~~~~~L~~Q  218 (233)
T 2f31_A          148 EVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLG-LHQVLQELREIENEDMKVQ  218 (233)
T ss_dssp             TSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTT-HHHHHHHHHHCCCHHHHHH
T ss_pred             CcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC-hHHHHHHHhccCCHHHHHH
Confidence              2445567666644   23444444444444432       3444444555 6666666665444555443

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=93.42  E-value=4.9  Score=40.47  Aligned_cols=214  Identities=15%  Similarity=0.123  Sum_probs=121.3

Q ss_pred             CchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchhhhhhccCCc
Q 020640           43 TLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMV  122 (323)
Q Consensus        43 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~  122 (323)
                      ++..+..++.++..++..-...     . ...++.++..+..-.   ++++.++..++.++..++..-........  .+
T Consensus       462 ~w~~~eaal~al~~i~~~~~~~-----~-~~~l~~l~~~l~~l~---~~~~~vr~~~~~~l~~~~~~l~~~~~~l~--~v  530 (963)
T 2x19_B          462 SWQHTEALLYGFQSIAETIDVN-----Y-SDVVPGLIGLIPRIS---ISNVQLADTVMFTIGALSEWLADHPVMIN--SV  530 (963)
T ss_dssp             CHHHHHHHHHHHHHHTTSCCSS-----C-CSHHHHHHHHGGGSC---CCSHHHHHHHHHHHHHTHHHHHHCHHHHT--TT
T ss_pred             chHHHHHHHHHHHHHHhhcCch-----h-hHHHHHHHHHHHhCC---CCcHHHHHHHHHHHHHHHHHHHhCHHHHH--HH
Confidence            3556777888888877543221     1 234555555553221   34688999999999988753221123343  37


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhc--cCChHHHHHHhhhc--CHhHHHHHHHHHHHhccCC--chh
Q 020640          123 IPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGK--SGALKPLIDLLDEG--HQSAMKDVASAIFNLCITH--ENK  196 (323)
Q Consensus       123 i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~--~g~i~~Lv~lL~~~--~~~~~~~al~aL~~L~~~~--~~~  196 (323)
                      ++.++..+.+  +.++..|+.++.+++..  .+..+..  ...++.|..++..+  +...+..+..++..++..-  +..
T Consensus       531 l~~l~~~l~~--~~V~~~A~~al~~l~~~--~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~  606 (963)
T 2x19_B          531 LPLVLHALGN--PELSVSSVSTLKKICRE--CKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEI  606 (963)
T ss_dssp             HHHHHHHTTC--GGGHHHHHHHHHHHHHH--TGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             HHHHHHHhCC--chHHHHHHHHHHHHHHH--HHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHH
Confidence            8888888855  78999999999999842  3333432  33455555666653  5678888888888887543  233


Q ss_pred             HHHHhhCchHHHHHHhh----cC---chHH---HHHHHHHHHhcC-----H-H--------------HHHHH--HhcCCH
Q 020640          197 ARAVRDGGVSVILKKIM----DG---VHVD---ELLAILAMLSTN-----H-R--------------AVEEI--GDLGGV  244 (323)
Q Consensus       197 ~~i~~~g~v~~Lv~ll~----~~---~~~~---~a~~~L~~l~~~-----~-~--------------~~~~i--~~~g~i  244 (323)
                      ...++ ..++++...+.    ..   +.+.   ..+.+|..+...     + .              .+..+  .....+
T Consensus       607 ~~~~~-~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  685 (963)
T 2x19_B          607 LKNLH-SLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVF  685 (963)
T ss_dssp             HHHHH-HHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHH
T ss_pred             HHHHH-HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHH
Confidence            33332 25555555443    11   1222   233333333321     1 0              00011  122345


Q ss_pred             HHHHHHHhc-cCChhHHHHHHHHHHHhcc
Q 020640          245 SCMLRIIRE-STCDRNKENCIAILHTICL  272 (323)
Q Consensus       245 ~~Lv~ll~~-~~~~~~~~~a~~~L~~L~~  272 (323)
                      +.+..++.. .++..+.+.++.++..+..
T Consensus       686 ~~~~~~l~~~~~~~~v~e~~~~~l~~~~~  714 (963)
T 2x19_B          686 QLIQKVLSKWLNDAQVVEAVCAIFEKSVK  714 (963)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccCchHHHHHHHHHHHHHHH
Confidence            555566643 2346788999998888754

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=93.36  E-value=3  Score=34.61  Aligned_cols=141  Identities=21%  Similarity=0.226  Sum_probs=93.6

Q ss_pred             HHHHHHHhccCh-hhHHHHhhhcCCHHHHHHhhccccc-CC----CCCHHHHHHHHHHHHHhccccchhhhhhccCCcHH
Q 020640           51 AKELRLLTKRMP-SFRALFGESHDAIPQLLSPLSESKC-EN----GINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIP  124 (323)
Q Consensus        51 ~~~L~~l~~~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~-~~----~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~  124 (323)
                      +..|.-.-+.++ .-...| . .+|+..|+++|..... +.    ..+...+..++.+|..+.........+......+.
T Consensus        22 L~~L~v~Lrt~~~~Wv~~F-~-~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~   99 (233)
T 2f31_A           22 LESLRVSLNNNPVSWVQTF-G-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGIL   99 (233)
T ss_dssp             HHHHHHHHHHSCHHHHHHH-H-HHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHH
T ss_pred             HHHHhHhHhcCCcHHHHHH-H-HhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHH
Confidence            344443333333 445667 5 6889999999864211 00    11456788888999988777777777777777888


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhcCCCC--c-hhhh----------hccCChHHHHHHhhh-cCHhHHHHHHHHHHHhc
Q 020640          125 LLMDALRSGTIETRSNAAAALFTLSALDS--N-KEVI----------GKSGALKPLIDLLDE-GHQSAMKDVASAIFNLC  190 (323)
Q Consensus       125 ~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~--~-~~~i----------~~~g~i~~Lv~lL~~-~~~~~~~~al~aL~~L~  190 (323)
                      .++..+.++++.++..++..|..+|..++  + ...+          .+..-...+++.++. ++.+.+..++..+-.+.
T Consensus       100 ~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li  179 (233)
T 2f31_A          100 LLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALI  179 (233)
T ss_dssp             HHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHH
Confidence            88888888999999999999999987654  3 3322          223355667777764 45566666666666665


Q ss_pred             cCC
Q 020640          191 ITH  193 (323)
Q Consensus       191 ~~~  193 (323)
                      ...
T Consensus       180 ~~~  182 (233)
T 2f31_A          180 TPA  182 (233)
T ss_dssp             TTC
T ss_pred             CCC
Confidence            544

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=92.64  E-value=1.6  Score=44.77  Aligned_cols=217  Identities=10%  Similarity=0.038  Sum_probs=125.4

Q ss_pred             hHHHHHHHHh-cCCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhcc-
Q 020640           31 DHFLSLLKKM-SATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSI-  108 (323)
Q Consensus        31 ~~i~~Lv~~l-~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~-  108 (323)
                      ..+..++..+ +.+...|.+|-..|..+-. +          .++...+..+|..     +.++.++..|+..|.+.-. 
T Consensus        16 ~~l~~~l~~~~~p~~~~r~~Ae~~L~~~~~-~----------p~~~~~l~~iL~~-----s~~~~vr~~aa~~Lk~~i~~   79 (1049)
T 3m1i_C           16 ALLDQVVSTFYQGSGVQQKQAQEILTKFQD-N----------PDAWQKADQILQF-----STNPQSKFIALSILDKLITR   79 (1049)
T ss_dssp             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHH-S----------TTGGGGHHHHHHH-----CSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCChHHHHHHHHHHHHHHh-C----------chHHHHHHHHHhh-----CCCHHHHHHHHHHHHHHHHh
Confidence            3455555444 4555677788888877754 3          3455566667754     4578999999999987642 


Q ss_pred             -----ccchhhhhhccCCcHHHHHHHHhcC-----CHHHHHHHHHHHHHhcCCCCchhhhhc-cCChHHHHHHhhhcCHh
Q 020640          109 -----HDNNKKLVAETPMVIPLLMDALRSG-----TIETRSNAAAALFTLSALDSNKEVIGK-SGALKPLIDLLDEGHQS  177 (323)
Q Consensus       109 -----~~~~~~~i~~~~g~i~~Lv~ll~~~-----~~~~~~~a~~~L~~L~~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~  177 (323)
                           .++.+..+...  ++..+...-..+     +..++...+.++..++..+-.    .. .+.++.|+..+. .++.
T Consensus        80 ~W~~l~~~~~~~ir~~--ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p----~~Wp~ll~~L~~~~~-~~~~  152 (1049)
T 3m1i_C           80 KWKLLPNDHRIGIRNF--VVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWP----QNWPEFIPELIGSSS-SSVN  152 (1049)
T ss_dssp             TGGGSCHHHHHHHHHH--HHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTT----TTCTTHHHHHHHHHT-TCHH
T ss_pred             hCccCCHHHHHHHHHH--HHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCc----ccchHHHHHHHHHHc-cChH
Confidence                 12233333321  333333221111     356778888888888753211    12 467888998886 4556


Q ss_pred             HHHHHHHHHHHhccCC---------chh-----HHHHhh--CchHHHHHHhhcC---chHHHHHHHHHHHhcCHHHHHHH
Q 020640          178 AMKDVASAIFNLCITH---------ENK-----ARAVRD--GGVSVILKKIMDG---VHVDELLAILAMLSTNHRAVEEI  238 (323)
Q Consensus       178 ~~~~al~aL~~L~~~~---------~~~-----~~i~~~--g~v~~Lv~ll~~~---~~~~~a~~~L~~l~~~~~~~~~i  238 (323)
                      .+..++.+|..|+..-         ..+     ..+.+.  ..++.+..++.+.   .++..++.++.+....-+. ..+
T Consensus       153 ~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~-~~~  231 (1049)
T 3m1i_C          153 VCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPY-RYI  231 (1049)
T ss_dssp             HHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCT-HHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCH-HHH
Confidence            6777888887776321         111     112111  1223334444432   4677788888776553211 224


Q ss_pred             HhcCCHHHHHHHHhccCChhHHHHHHHHHHHhccc
Q 020640          239 GDLGGVSCMLRIIRESTCDRNKENCIAILHTICLS  273 (323)
Q Consensus       239 ~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~  273 (323)
                      .+...++.+.+.+. .+ +.++..|+.+|..+...
T Consensus       232 ~~~~ll~~l~~~~l-~~-~~~~~~a~~~L~~i~~~  264 (1049)
T 3m1i_C          232 YETNILELLSTKFM-TS-PDTRAITLKCLTEVSNL  264 (1049)
T ss_dssp             HSSSHHHHHHTHHH-HS-HHHHHHHHHHHHHHHHC
T ss_pred             hhhhHHHHHHHHhC-CC-HhHHHHHHHHHHHHHhC
Confidence            45566776663332 23 78888999999888765

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=91.77  E-value=1.7  Score=37.02  Aligned_cols=175  Identities=10%  Similarity=0.034  Sum_probs=104.8

Q ss_pred             CCCHHHHHHHHHHHHHhccccchhhhhhccCCcHHHHHHHH----hcCCHHHHHHHHHHHHHhcC---CCCchhhhhc-c
Q 020640           90 GINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDAL----RSGTIETRSNAAAALFTLSA---LDSNKEVIGK-S  161 (323)
Q Consensus        90 ~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll----~~~~~~~~~~a~~~L~~L~~---~~~~~~~i~~-~  161 (323)
                      +.|..-+..|+..|.....  .+...+..   .+..++..+    .+.+..+...++.+|..+..   ..+.+..-.+ .
T Consensus        57 s~d~k~~~~ale~L~~~l~--~~~~~~~~---~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~  131 (266)
T 2of3_A           57 HKDFKQHLAALDSLVRLAD--TSPRSLLS---NSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVS  131 (266)
T ss_dssp             CSCHHHHHHHHHHHHHHHH--HCHHHHHH---THHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHhh--hChHHHHH---HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHH
Confidence            4466666677776664321  12222222   234444433    36688888888888887631   1111111111 2


Q ss_pred             CChHHHHHHhhhcCHhHHHHHHHHHHHhccCCchhHHHHh-hCchHHHHHHhhcC--chHHHHHHHHHHHhcCHHHHHHH
Q 020640          162 GALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVR-DGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEI  238 (323)
Q Consensus       162 g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~i~~-~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~~~~~~~i  238 (323)
                      -.+|.|++-+.+..+.++..+-.+|..++.       +.. ....+.++.-+++.  ..++.++..+..+-... +-.  
T Consensus       132 ~~lP~LveKlGd~k~~vR~~~r~il~~l~~-------v~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~-G~~--  201 (266)
T 2of3_A          132 AFVPYLLLKTGEAKDNMRTSVRDIVNVLSD-------VVGPLKMTPMLLDALKSKNARQRSECLLVIEYYITNA-GIS--  201 (266)
T ss_dssp             HHHHHHHHGGGCSSHHHHHHHHHHHHHHHH-------HHCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH-CSG--
T ss_pred             HHHHHHHHHhCCChHHHHHHHHHHHHHHHH-------HCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhc-CCC--
Confidence            367999998888888899988888877643       111 12444555555555  56777887777775421 100  


Q ss_pred             HhcCCH---HHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHH
Q 020640          239 GDLGGV---SCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAM  281 (323)
Q Consensus       239 ~~~g~i---~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~  281 (323)
                       ..+++   +.+..++.+.+ ..++..|..++..+-....+.....
T Consensus       202 -~~~~l~~~~~ia~ll~D~d-~~VR~aAl~~lve~y~~~Gd~v~k~  245 (266)
T 2of3_A          202 -PLKSLSVEKTVAPFVGDKD-VNVRNAAINVLVACFKFEGDQMWKA  245 (266)
T ss_dssp             -GGGGGCHHHHHGGGGGCSS-HHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred             -ccccccchHHHHHHHcCCC-HHHHHHHHHHHHHHHHHhhHHHHHH
Confidence             23467   99999999654 8999999999987665543333333

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=91.66  E-value=7.4  Score=39.76  Aligned_cols=218  Identities=11%  Similarity=0.070  Sum_probs=131.3

Q ss_pred             hhhhHHHHHHHHh-cCCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHh
Q 020640           28 ADRDHFLSLLKKM-SATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNL  106 (323)
Q Consensus        28 ~~~~~i~~Lv~~l-~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~l  106 (323)
                      .+-..+..++..+ +.+...|.+|-..|..+-. ++          ++...+..+|..     +.++.++..|+.+|.+.
T Consensus        13 ~dv~~Le~av~~ly~p~~~~r~~A~~~L~~~q~-sp----------~aw~~~~~iL~~-----s~~~~vR~faa~~Lk~~   76 (1023)
T 4hat_C           13 LDIALLDQVVSTFYQGSGVQQKQAQEILTKFQD-NP----------DAWQKADQILQF-----STNPQSKFIALSILDKL   76 (1023)
T ss_dssp             CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH-CT----------TGGGGHHHHHHH-----CCCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHhCCChHHHHHHHHHHHHHHc-Cc----------cHHHHHHHHhcC-----CCCHHHHHHHHHHHHHH
Confidence            3445777777777 4444577778888877764 33          445555566643     55789999999999875


Q ss_pred             cc------ccchhhhhhccCCcHHHHHHHHhcC-----CHHHHHHHHHHHHHhcCCCCchhhhhc-cCChHHHHHHhhhc
Q 020640          107 SI------HDNNKKLVAETPMVIPLLMDALRSG-----TIETRSNAAAALFTLSALDSNKEVIGK-SGALKPLIDLLDEG  174 (323)
Q Consensus       107 s~------~~~~~~~i~~~~g~i~~Lv~ll~~~-----~~~~~~~a~~~L~~L~~~~~~~~~i~~-~g~i~~Lv~lL~~~  174 (323)
                      -.      .++.+..+...  ++..+......+     ..-++...+.++..++..+-.    .. .+.++.++.++.. 
T Consensus        77 I~~~W~~L~~e~~~~Ir~~--Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p----~~Wp~~l~dL~~~l~~-  149 (1023)
T 4hat_C           77 ITRKWKLLPNDHRIGIRNF--VVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWP----QNWPEFIPELIGSSSS-  149 (1023)
T ss_dssp             HHHHGGGSCHHHHHHHHHH--HHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTT----TTCTTHHHHHHHHTTT-
T ss_pred             HHhhhhcCCHHHHHHHHHH--HHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhCh----hhchHHHHHHHHHhcC-
Confidence            33      22234444332  444444432221     345566677788877643210    12 5678888888865 


Q ss_pred             CHhHHHHHHHHHHHhccC---------CchhHH-H----Hhh--CchHHHHHHhhcC---chHHHHHHHHHHHhcCHHHH
Q 020640          175 HQSAMKDVASAIFNLCIT---------HENKAR-A----VRD--GGVSVILKKIMDG---VHVDELLAILAMLSTNHRAV  235 (323)
Q Consensus       175 ~~~~~~~al~aL~~L~~~---------~~~~~~-i----~~~--g~v~~Lv~ll~~~---~~~~~a~~~L~~l~~~~~~~  235 (323)
                      ++......+..|..|+..         ...|.. +    .+.  ..++.+..++.+.   .+...++.++.....-=+ -
T Consensus       150 ~~~~~~~~L~iL~~L~EEV~~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~WI~-i  228 (1023)
T 4hat_C          150 SVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGASSSLIVATLESLLRYLHWIP-Y  228 (1023)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTTSC-T
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCC-H
Confidence            345567777777766432         111221 1    111  2333344444432   456777787777766311 2


Q ss_pred             HHHHhcCCHHHHH-HHHhccCChhHHHHHHHHHHHhcc
Q 020640          236 EEIGDLGGVSCML-RIIRESTCDRNKENCIAILHTICL  272 (323)
Q Consensus       236 ~~i~~~g~i~~Lv-~ll~~~~~~~~~~~a~~~L~~L~~  272 (323)
                      ..+++.+.++.+. .++..   +..+..|+.+|..+..
T Consensus       229 ~~i~~~~ll~~l~~~~L~~---~~~r~~A~ecL~eIv~  263 (1023)
T 4hat_C          229 RYIYETNILELLSTKFMTS---PDTRAITLKCLTEVSN  263 (1023)
T ss_dssp             HHHHSSSHHHHHHTHHHHS---HHHHHHHHHHHHHHHT
T ss_pred             HHhcchhHHHHHHHHHcCC---HHHHHHHHHHHHHHHc
Confidence            3466778899999 88762   7899999999999987

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=91.40  E-value=7.7  Score=34.82  Aligned_cols=161  Identities=21%  Similarity=0.247  Sum_probs=102.7

Q ss_pred             HHHHHHHhccCh-hhHHHHhhhcCCHHHHHHhhccccc-CCC----CCHHHHHHHHHHHHHhccccchhhhhhccCCcHH
Q 020640           51 AKELRLLTKRMP-SFRALFGESHDAIPQLLSPLSESKC-ENG----INPNLQEDVITTLLNLSIHDNNKKLVAETPMVIP  124 (323)
Q Consensus        51 ~~~L~~l~~~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~-~~~----~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~  124 (323)
                      +..|.-.-+.++ .....| . .+|+..|+++|..... +..    .+...+..++.+|..+.........+......+.
T Consensus        26 L~~L~v~Lrt~~~~Wv~~F-~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~  103 (386)
T 2bnx_A           26 LESLRVSLNNNPVSWVQTF-G-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGIL  103 (386)
T ss_dssp             HHHHHHHHHHSCHHHHHHH-H-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHH
T ss_pred             HHHHhHHHhcCCcHHHHHH-H-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHH
Confidence            444443333333 344567 4 5789999988863211 001    1456788888999988777777777777777888


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhcCCCC--c-hhhh----------hccCChHHHHHHhhh-cCHhHHHHHHHHHHHhc
Q 020640          125 LLMDALRSGTIETRSNAAAALFTLSALDS--N-KEVI----------GKSGALKPLIDLLDE-GHQSAMKDVASAIFNLC  190 (323)
Q Consensus       125 ~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~--~-~~~i----------~~~g~i~~Lv~lL~~-~~~~~~~~al~aL~~L~  190 (323)
                      .++..+.+.++.++..++.+|..+|..++  + ...+          .+..-...+++.+.. .+.+.+..++..+-.+.
T Consensus       104 ~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv  183 (386)
T 2bnx_A          104 LLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALI  183 (386)
T ss_dssp             HHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence            88888888899999999999999987654  3 2222          233456667777764 45667777776666665


Q ss_pred             cCCc---hhH----HHHhhCchHHHHHHhhc
Q 020640          191 ITHE---NKA----RAVRDGGVSVILKKIMD  214 (323)
Q Consensus       191 ~~~~---~~~----~i~~~g~v~~Lv~ll~~  214 (323)
                      ...+   .|.    ++... |+..++.-|+.
T Consensus       184 ~~~~dl~~R~~LR~Ef~~~-GL~~il~~Lr~  213 (386)
T 2bnx_A          184 TPAEELDFRVHIRSELMRL-GLHQVLQELRE  213 (386)
T ss_dssp             TTCSCHHHHHHHHHHHHHT-THHHHHHHHTT
T ss_pred             CCCCCHHHHHHHHHHHHHC-ChHHHHHHHhc
Confidence            5543   222    23344 55555566654

>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*

Probab=90.86  E-value=8.3  Score=34.18  Aligned_cols=114  Identities=18%  Similarity=0.146  Sum_probs=85.8

Q ss_pred             HHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchhhhhhccCCcHHHHHHH
Q 020640           50 AAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDA  129 (323)
Q Consensus        50 a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~l  129 (323)
                      +...|.-+. ++.+.-.-|++ .+|+..+..+..      -++.++.+.+++.|...|....-+..-.+  ..+|.++..
T Consensus       263 ~FDLL~LLm-HdSnAIDGFVk-~DGv~~I~Tvin------YpN~~l~RaG~KLLLQVSDaksL~~t~L~--e~LPFi~~~  332 (619)
T 3c2g_A          263 TFDLLGLLL-HDSDAIDGFVR-SDGVGAITTVVQ------YPNNDLIRAGCKLLLQVSDAKALAKTPLE--NILPFLLRL  332 (619)
T ss_dssp             HHHHHHHHC-CSHHHHHHHHH-TTHHHHHHHHTT------SSCHHHHHHHHHHHHHHTTCGGGGTSCCT--THHHHHHHH
T ss_pred             HHHHHHHHh-cccccccceee-cccceeEEEEee------cCCcHHHHhhhheeeeecchHHHhhcccc--ccchHHHHH
Confidence            344444444 55555677899 899999999988      67889999999999998865543333333  358888888


Q ss_pred             Hh-cCCHHHHHHHHHHHHHhcCCCCc-hhhhhccCChHHHHHHhhh
Q 020640          130 LR-SGTIETRSNAAAALFTLSALDSN-KEVIGKSGALKPLIDLLDE  173 (323)
Q Consensus       130 l~-~~~~~~~~~a~~~L~~L~~~~~~-~~~i~~~g~i~~Lv~lL~~  173 (323)
                      ++ +++.++.....+.|.|...+... ++..+..|++..|-+.+..
T Consensus       333 i~~h~eDdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~k  378 (619)
T 3c2g_A          333 IEIHPDDEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISK  378 (619)
T ss_dssp             HHHCCCHHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHT
T ss_pred             hccCCCcceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhh
Confidence            86 67899999999999999877654 5555669999999988753

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=90.60  E-value=2.7  Score=37.82  Aligned_cols=128  Identities=9%  Similarity=0.128  Sum_probs=83.0

Q ss_pred             HhHHHHHHHHHHHhccCCchhHHHHhh-CchHHHHHHhhcC--chHHHHHHHHHHHhcCHH--H-HHHHHh---------
Q 020640          176 QSAMKDVASAIFNLCITHENKARAVRD-GGVSVILKKIMDG--VHVDELLAILAMLSTNHR--A-VEEIGD---------  240 (323)
Q Consensus       176 ~~~~~~al~aL~~L~~~~~~~~~i~~~-g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~~~--~-~~~i~~---------  240 (323)
                      ......+++||..+..+..+...++.. +++..++..|.+.  .++..++.+|..+|..+.  + -..+.+         
T Consensus        72 ~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~  151 (386)
T 2bnx_A           72 SRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMD  151 (386)
T ss_dssp             HHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhC
Confidence            456778899999988777777777765 7888888888766  456778888888888542  4 333322         


Q ss_pred             -cCCHHHHHHHHhccCChhHHHHHHHHHHHhcccChH-----hHHHHHhhcccHHHHHHHhhcCCHHHH
Q 020640          241 -LGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRT-----KWKAMREEESTHGTISKLAQDGTARAK  303 (323)
Q Consensus       241 -~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~-----~~~~~~~~~~~i~~L~~ll~~~~~~~~  303 (323)
                       ..-...+++.++.+.+...+..++..+-.+....++     ..+.-+...|..+.+-++-..+++.+.
T Consensus       152 e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~~il~~Lr~~~~~~L~  220 (386)
T 2bnx_A          152 EVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMK  220 (386)
T ss_dssp             TSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHHHHHTTCCCHHHH
T ss_pred             chhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHhccCChhHH
Confidence             124666888887544466777777777777776653     222223345555555545443455443

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=89.99  E-value=3.3  Score=42.37  Aligned_cols=143  Identities=10%  Similarity=0.044  Sum_probs=85.0

Q ss_pred             CchhHHHHHHHHHHHhccChhh-HHHHhhhcCCHHHHHHhhcccccCCCCCH--HHHHHHHHHHHHhccccchhhhhhcc
Q 020640           43 TLPDQTEAAKELRLLTKRMPSF-RALFGESHDAIPQLLSPLSESKCENGINP--NLQEDVITTLLNLSIHDNNKKLVAET  119 (323)
Q Consensus        43 ~~~~~~~a~~~L~~l~~~~~~~-~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~--~~~~~a~~~L~~ls~~~~~~~~i~~~  119 (323)
                      ++..++.++.++..++..-.+. -..+..  .+++.|++++....   ..++  .++..++.++...+.--........ 
T Consensus       466 ~W~~~EA~~~a~gaIa~~~~~~~e~~~l~--~vi~~Ll~l~~~~~---~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~-  539 (1023)
T 4hat_C          466 SWHNINTLSWAIGSISGTMSEDTEKRFVV--TVIKDLLDLCVKKR---GKDNKAVVASDIMYVVGQYPRFLKAHWNFLR-  539 (1023)
T ss_dssp             CHHHHHHHHHHHHHTTTSSCHHHHHHHHH--HHHHHHHHHHHHCC---SHHHHHHHHHHHHHHHHTCHHHHHHCHHHHH-
T ss_pred             CHHHHHHHHHHHHHHHcCCCchhHHHHHH--HHHHHHHHhhhccc---cCcchHHHHHHHHHHHHHHHHHHhccHHHHH-
Confidence            4778899999999988654332 122222  36788888775311   1122  3444566777765432111222333 


Q ss_pred             CCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhc------cCChHHHHHHhhh----cCHhHHHHHHHHHHHh
Q 020640          120 PMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGK------SGALKPLIDLLDE----GHQSAMKDVASAIFNL  189 (323)
Q Consensus       120 ~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~------~g~i~~Lv~lL~~----~~~~~~~~al~aL~~L  189 (323)
                      . ++..|+..+...++.++..|++++.+|+.  +++..++.      ...++.++..+..    -+......+..++..+
T Consensus       540 ~-vl~~L~~~l~~~~~~v~~~A~~al~~l~~--~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~v  616 (1023)
T 4hat_C          540 T-VILKLFEFMHETHEGVQDMACDTFIKIVQ--KCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGII  616 (1023)
T ss_dssp             H-HHHHHHHHTTCSCHHHHHHHHHHHHHHHH--HHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred             H-HHHHHHHHhhcCCHHHHHHHHHHHHHHHH--HHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            1 56666677777789999999999999986  34444432      1234555443332    3566667778888887


Q ss_pred             ccCCc
Q 020640          190 CITHE  194 (323)
Q Consensus       190 ~~~~~  194 (323)
                      ...-+
T Consensus       617 i~~~~  621 (1023)
T 4hat_C          617 ISEER  621 (1023)
T ss_dssp             HTTCC
T ss_pred             HHhCC
Confidence            66543

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=89.79  E-value=14  Score=37.92  Aligned_cols=173  Identities=13%  Similarity=0.059  Sum_probs=97.8

Q ss_pred             CHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhc----cccch-hhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 020640           74 AIPQLLSPLSESKCENGINPNLQEDVITTLLNLS----IHDNN-KKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTL  148 (323)
Q Consensus        74 ~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls----~~~~~-~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L  148 (323)
                      .+..+..++.....  ..++.++..++-++..|.    ..... ...++. . +...+...+...+.+-+..++++|.|+
T Consensus       392 ~l~~~~~l~~~~~~--~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~-~-i~~~l~~~~~~~~~~~~~~~LkaLGN~  467 (1056)
T 1lsh_A          392 SLSYARELLNTSFI--RNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQ-P-LHDLLSQSSDRAKEEEIVLALKALGNA  467 (1056)
T ss_dssp             HHHHHHHHHTCHHH--HTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTH-H-HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCccc--ccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHH-H-HHHHHHHHHhcCChHHHHHHHHHhhcc
Confidence            34445555552110  234556666666665553    22221 112222 1 344455556677888888999999999


Q ss_pred             cCCCCchhhhhccCChHHHHHHhhh-------cCHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcC----ch
Q 020640          149 SALDSNKEVIGKSGALKPLIDLLDE-------GHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG----VH  217 (323)
Q Consensus       149 ~~~~~~~~~i~~~g~i~~Lv~lL~~-------~~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~----~~  217 (323)
                      ...          ..++.|.+++..       ....++..|+.+|+.++...+   ..    +-+.+..++.+.    ++
T Consensus       468 g~p----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p---~~----v~~il~~i~~n~~e~~Ev  530 (1056)
T 1lsh_A          468 GQP----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDP---RK----VQEIVLPIFLNVAIKSEL  530 (1056)
T ss_dssp             TCG----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCH---HH----HHHHHHHHHHCTTSCHHH
T ss_pred             CCh----------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhch---HH----HHHHHHHHhcCCCCChHH
Confidence            652          257777777642       135688889999998874322   11    223566766543    45


Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHhcccChH
Q 020640          218 VDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRT  276 (323)
Q Consensus       218 ~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~  276 (323)
                      |..|+.+|.  -.+|..       ..++.+...+....+..+.......|.+++.....
T Consensus       531 RiaA~~~Lm--~t~P~~-------~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P  580 (1056)
T 1lsh_A          531 RIRSCIVFF--ESKPSV-------ALVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNP  580 (1056)
T ss_dssp             HHHHHHHHH--HTCCCH-------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSG
T ss_pred             HHHHHHHHH--HHCcCH-------HHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCc
Confidence            655655543  233321       12455666666544566777777777777776543

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=88.55  E-value=0.37  Score=40.56  Aligned_cols=85  Identities=15%  Similarity=0.085  Sum_probs=48.9

Q ss_pred             hccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchhhhhhccCCcHHHHHHHHhcCCHHH
Q 020640           58 TKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIET  137 (323)
Q Consensus        58 ~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~  137 (323)
                      ...++..|..... .=....|..+++      ++++.++..++..|   .               .+.|..++++++..+
T Consensus        60 ~d~~~~VR~~AA~-~l~~~~l~~L~~------D~~~~VR~~aA~~L---~---------------~~~L~~ll~D~d~~V  114 (244)
T 1lrv_A           60 ADPFWERRAIAVR-YSPVEALTPLIR------DSDEVVRRAVAYRL---P---------------REQLSALMFDEDREV  114 (244)
T ss_dssp             TCSSHHHHHHHHT-TSCGGGGGGGTT------CSSHHHHHHHHTTS---C---------------SGGGGGTTTCSCHHH
T ss_pred             cCCCHHHHHHHHH-hCCHHHHHHHcc------CcCHHHHHHHHHHC---C---------------HHHHHHHHcCCCHHH
Confidence            3334555655555 323444555555      67778887777532   1               123556677778888


Q ss_pred             HHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHHH
Q 020640          138 RSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVAS  184 (323)
Q Consensus       138 ~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~  184 (323)
                      +..++..+   .              .+.|..++++++..++..++.
T Consensus       115 R~~aA~~l---~--------------~~~L~~L~~D~d~~VR~~aA~  144 (244)
T 1lrv_A          115 RITVADRL---P--------------LEQLEQMAADRDYLVRAYVVQ  144 (244)
T ss_dssp             HHHHHHHS---C--------------TGGGGGGTTCSSHHHHHHHHH
T ss_pred             HHHHHHhC---C--------------HHHHHHHHcCCCHHHHHHHHH
Confidence            87777632   1              123444556667777776666

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=88.07  E-value=16  Score=37.19  Aligned_cols=212  Identities=8%  Similarity=-0.005  Sum_probs=118.9

Q ss_pred             CHHHHHHHHHHHHHhccccch-hhhhhc----cCCcHHHHHHHHh-----cCCHHHHHHHHHHHHHhcCCCCchhhhhcc
Q 020640           92 NPNLQEDVITTLLNLSIHDNN-KKLVAE----TPMVIPLLMDALR-----SGTIETRSNAAAALFTLSALDSNKEVIGKS  161 (323)
Q Consensus        92 ~~~~~~~a~~~L~~ls~~~~~-~~~i~~----~~g~i~~Lv~ll~-----~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~  161 (323)
                      +....+.++.+|+.++..-.+ ...+..    .+.+++.+..+++     .+++.++..+++++...+.+-..     ..
T Consensus       456 ~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~-----~~  530 (980)
T 3ibv_A          456 SWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDY-----ES  530 (980)
T ss_dssp             HHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGT-----CC
T ss_pred             CHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhc-----Cc
Confidence            567889999999988764321 111100    1124455556655     56899999999999998754332     23


Q ss_pred             CChHHHHHHhhh------cCHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcC--------c-----------
Q 020640          162 GALKPLIDLLDE------GHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG--------V-----------  216 (323)
Q Consensus       162 g~i~~Lv~lL~~------~~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--------~-----------  216 (323)
                      ..+++++..+-+      +++.++..|..++.++|.....  .+  .+.++.++..+.+-        .           
T Consensus       531 ~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~--~L--~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~  606 (980)
T 3ibv_A          531 AAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKK--QV--VNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNS  606 (980)
T ss_dssp             TTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTT--TC--SSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHH
T ss_pred             hhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhH--Hh--hhHHHHHHHHHHHhhcCcCCCCCcccccccchhh
Confidence            456666666544      4678999999999999875432  12  13445555544311        0           


Q ss_pred             -----------hHHHHHHHHHHHhcC-HHHHHHHHhcCCHHHHHH----HHhccC---ChhH-HHHHHHHHHHhcccChH
Q 020640          217 -----------HVDELLAILAMLSTN-HRAVEEIGDLGGVSCMLR----IIREST---CDRN-KENCIAILHTICLSDRT  276 (323)
Q Consensus       217 -----------~~~~a~~~L~~l~~~-~~~~~~i~~~g~i~~Lv~----ll~~~~---~~~~-~~~a~~~L~~L~~~~~~  276 (323)
                                 ....|++.|...... ++.+....+ ..++.+++    .+....   ++.. ....+.++..++..-++
T Consensus       607 ~~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~-~ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf~~  685 (980)
T 3ibv_A          607 SIRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCD-SLINALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGFPA  685 (980)
T ss_dssp             HHHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH-HHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTSCS
T ss_pred             hcccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHH-HHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHhccCCc
Confidence                       023355555544443 343433333 23444443    332211   1212 12445556666654321


Q ss_pred             h------HHHHHhhcccHHHHHHHhh--cCCHHHHHHHHHHHHHHhc
Q 020640          277 K------WKAMREEESTHGTISKLAQ--DGTARAKRKATGILERLKR  315 (323)
Q Consensus       277 ~------~~~~~~~~~~i~~L~~ll~--~~~~~~~~~A~~~L~~l~~  315 (323)
                      .      +...+  ..+.+.+...+.  ..+..+++++...++.+-.
T Consensus       686 ~~~~~~p~~~~f--~~~~~~il~~l~~~~~~~~irea~~~~~~r~i~  730 (980)
T 3ibv_A          686 RGSEEVAWLASF--NKASDEIFLILDRMGFNEDIRGAVRFTSGRIIN  730 (980)
T ss_dssp             CC-CCCSHHHHH--HHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTT
T ss_pred             ccCCCCcHHHHH--HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence            0      22232  246666666665  4589999999999988764

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=87.76  E-value=15  Score=37.78  Aligned_cols=218  Identities=14%  Similarity=0.066  Sum_probs=131.3

Q ss_pred             hhhhHHHHHHHHh-cCCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHh
Q 020640           28 ADRDHFLSLLKKM-SATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNL  106 (323)
Q Consensus        28 ~~~~~i~~Lv~~l-~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~l  106 (323)
                      .+-..+..++..+ +.+...|.+|-..|..+-. ++          ++...+..+|..     +.++.++..|+.+|.+.
T Consensus        25 ~Dv~~Le~lv~~ly~p~~~~r~qA~~~L~q~q~-sp----------~aw~~~~~iL~~-----s~~~~vR~fAa~~L~~~   88 (1073)
T 3gjx_A           25 LDINLLDNVVNCLYHGEGAQQRMAQEVLTHLKE-HP----------DAWTRVDTILEF-----SQNMNTKYYGLQILENV   88 (1073)
T ss_dssp             CSHHHHHHHHHTTTCSSHHHHHHHHHHHHTSSC-CS----------CHHHHHTCC--------CCSHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHc-Cc----------hHHHHHHHHhcC-----CCCHHHHHHHHHHHHHH
Confidence            3445777777777 3556678888888877664 44          334445555653     55889999999999876


Q ss_pred             cc------ccchhhhhhccCCcHHHHHHHHhc-----CCHHHHHHHHHHHHHhcCC--CCchhhhhccCChHHHHHHhhh
Q 020640          107 SI------HDNNKKLVAETPMVIPLLMDALRS-----GTIETRSNAAAALFTLSAL--DSNKEVIGKSGALKPLIDLLDE  173 (323)
Q Consensus       107 s~------~~~~~~~i~~~~g~i~~Lv~ll~~-----~~~~~~~~a~~~L~~L~~~--~~~~~~i~~~g~i~~Lv~lL~~  173 (323)
                      -.      .++.+..+...  ++..+...-..     .++.++...+.++..++..  ++.     =.+.++.++.++..
T Consensus        89 I~~~W~~L~~e~~~~LR~~--Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~-----Wp~fi~dLv~~~~~  161 (1073)
T 3gjx_A           89 IKTRWKILPRNQCEGIKKY--VVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKH-----WPTFISDIVGASRT  161 (1073)
T ss_dssp             HHHTGGGSCHHHHHHHHHH--HHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTT-----CTTHHHHHHHHHHH
T ss_pred             HHhhhhhCCHHHHHHHHHH--HHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhh-----ccHHHHHHHHHhCC
Confidence            33      12234444332  44444443322     2466777888888888642  221     14577788887764


Q ss_pred             cCHhHHHHHHHHHHHhccC--C-------chhH-HH---HhhCchHHHHHHh----hcC---chHHHHHHHHHHHhcCHH
Q 020640          174 GHQSAMKDVASAIFNLCIT--H-------ENKA-RA---VRDGGVSVILKKI----MDG---VHVDELLAILAMLSTNHR  233 (323)
Q Consensus       174 ~~~~~~~~al~aL~~L~~~--~-------~~~~-~i---~~~g~v~~Lv~ll----~~~---~~~~~a~~~L~~l~~~~~  233 (323)
                       ++......+..|..|+..  +       ..|. .+   +.. -++.++.++    ...   .+...++.+|..+..-=+
T Consensus       162 -~~~~~~~~L~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~-~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~  239 (1073)
T 3gjx_A          162 -SESLCQNNMVILKLLSEEVFDFSSGQITQVKAKHLKDSMCN-EFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIP  239 (1073)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHTTSHHHHBCHHHHHHHHHHHHH-TCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSC
T ss_pred             -CHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHH-HHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcC
Confidence             455677788888887654  1       1111 11   121 244455444    322   456677788887777311


Q ss_pred             HHHHHHhcCCHHHHH-HHHhccCChhHHHHHHHHHHHhcccC
Q 020640          234 AVEEIGDLGGVSCML-RIIRESTCDRNKENCIAILHTICLSD  274 (323)
Q Consensus       234 ~~~~i~~~g~i~~Lv-~ll~~~~~~~~~~~a~~~L~~L~~~~  274 (323)
                       -..+++.+.++.|+ .++.   ++..+..|+.+|..+....
T Consensus       240 -i~~i~~~~ll~~L~~~~L~---~~~~r~aA~dcL~eIv~k~  277 (1073)
T 3gjx_A          240 -LGYIFETKLISTLIYKFLN---VPMFRNVSLKCLTEIAGVS  277 (1073)
T ss_dssp             -THHHHSSSHHHHHHHHTSS---SHHHHHHHHHHHHHHHHSC
T ss_pred             -HHHhccchHHHHHHHHhcC---ChHHHHHHHHHHHHHHhcc
Confidence             13467778788774 5554   3789999999999998753

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=86.82  E-value=10  Score=34.97  Aligned_cols=117  Identities=14%  Similarity=0.134  Sum_probs=67.2

Q ss_pred             cCHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHH
Q 020640          174 GHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRII  251 (323)
Q Consensus       174 ~~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll  251 (323)
                      ++...+..|+..+...-.+.+....    .++..++.++.+.  .++..|...|..+|.+ +....+     +..|+++|
T Consensus        40 g~~k~K~LaaQ~I~kffk~FP~l~~----~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i~ki-----aDvL~QlL  109 (507)
T 3u0r_A           40 GGTKEKRLAAQFIPKFFKHFPELAD----SAINAQLDLCEDEDVSIRRQAIKELPQFATG-ENLPRV-----ADILTQLL  109 (507)
T ss_dssp             SCHHHHHHHHHHHHHHGGGCGGGHH----HHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCHHHH-----HHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHhhChhhHH----HHHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhhhhH-----HHHHHHHH
Confidence            4667777777777666554443222    2455677777665  4677777777777776 333333     45677777


Q ss_pred             hccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHH
Q 020640          252 RESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGIL  310 (323)
Q Consensus       252 ~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L  310 (323)
                      +..+ +.-....-.+|..+-..++.         +.+..|..-+..+++.+++++...|
T Consensus       110 qtdd-~~E~~~V~~sL~sllk~Dpk---------~tl~~lf~~i~~~~e~~Rer~lkFi  158 (507)
T 3u0r_A          110 QTDD-SAEFNLVNNALLSIFKMDAK---------GTLGGLFSQILQGEDIVRERAIKFL  158 (507)
T ss_dssp             TCCC-HHHHHHHHHHHHHHHHHCHH---------HHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             hccc-hHHHHHHHHHHHHHHhcChH---------HHHHHHHHHHcccchHHHHHHHHHH
Confidence            7433 44444555555555555532         2334444444445666676655555

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=85.94  E-value=6.3  Score=32.72  Aligned_cols=131  Identities=10%  Similarity=-0.043  Sum_probs=85.3

Q ss_pred             CCCHHHHHHHHHHHHHhccccchhhhhhccCCcHHHHHH-HHhcCCHHHHHHHHHHHHHhcC--CCCchhhhhccCChHH
Q 020640           90 GINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMD-ALRSGTIETRSNAAAALFTLSA--LDSNKEVIGKSGALKP  166 (323)
Q Consensus        90 ~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~-ll~~~~~~~~~~a~~~L~~L~~--~~~~~~~i~~~g~i~~  166 (323)
                      ++..+++..|+.+|..+ .         ....+++.+-. +-..++=.+++.++.++..++.  +++        ..++.
T Consensus        82 ~~~deVR~~Av~lLg~~-~---------~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe--------~~l~~  143 (240)
T 3l9t_A           82 SDVYQVRMYAVFLFGYL-S---------KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK--------KALPI  143 (240)
T ss_dssp             CSSHHHHHHHHHHHHHT-T---------TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT--------TTHHH
T ss_pred             CcchHHHHHHHHHHHhc-c---------CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH--------HHHHH
Confidence            55678999999988766 2         01114554544 3445678999999999999874  222        26788


Q ss_pred             HHHHhhhcCHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhc-CHHHHHHHHh
Q 020640          167 LIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLST-NHRAVEEIGD  240 (323)
Q Consensus       167 Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~-~~~~~~~i~~  240 (323)
                      +..++.+++..++..|...+.--+.....+..  -.-.++.|-.+..++  -+++.....|..+++ +|+-...+++
T Consensus       144 ~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~d--p~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~V~~~~~  218 (240)
T 3l9t_A          144 IDEWLKSSNLHTRRAATEGLRIWTNRPYFKEN--PNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDLVKIELK  218 (240)
T ss_dssp             HHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTC--HHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHhcCCCHHHHHHHHHhhHHHhccchhhcC--HHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHHHHHHHH
Confidence            88999999999999999887543322110000  001233333344444  478889999999999 5776666665

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=85.47  E-value=9.7  Score=38.87  Aligned_cols=186  Identities=8%  Similarity=0.001  Sum_probs=96.4

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHhcC----CCCchhhhhccCChHHHHHH----hhhc-------------------C
Q 020640          123 IPLLMDALRSGTIETRSNAAAALFTLSA----LDSNKEVIGKSGALKPLIDL----LDEG-------------------H  175 (323)
Q Consensus       123 i~~Lv~ll~~~~~~~~~~a~~~L~~L~~----~~~~~~~i~~~g~i~~Lv~l----L~~~-------------------~  175 (323)
                      ++.++.+...++.++...++.....++.    .+..+....  ..++.|+..    +.-+                   +
T Consensus       346 l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~--~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d  423 (1049)
T 3m1i_C          346 HQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYE--EICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKE  423 (1049)
T ss_dssp             HHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGH--HHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCC
T ss_pred             HHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHH--HHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhcc
Confidence            4555555566677777778777777765    322222221  233344433    2110                   0


Q ss_pred             H---hHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcC----chHHHHHHHHHHHhcC--HHHHHHHHhcCCHHH
Q 020640          176 Q---SAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG----VHVDELLAILAMLSTN--HRAVEEIGDLGGVSC  246 (323)
Q Consensus       176 ~---~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~----~~~~~a~~~L~~l~~~--~~~~~~i~~~g~i~~  246 (323)
                      .   ..+..+..+|..++.....  .++.. ..+.+-..+...    ..++.++.++..++..  +.....+. ..+++.
T Consensus       424 ~d~~~~~~~~~~~L~~l~~~~~~--~~l~~-v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l-~~v~~~  499 (1049)
T 3m1i_C          424 SDTIQLYKSEREVLVYLTHLNVI--DTEEI-MISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFV-VTVIKD  499 (1049)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCHH--HHHHH-HHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHH-HHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHccCHH--HHHHH-HHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHH-HHHHHH
Confidence            0   1233455566666532211  11111 223333344321    4588899999988864  22111211 113444


Q ss_pred             HHHHHhcc----CChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhcch
Q 020640          247 MLRIIRES----TCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTV  317 (323)
Q Consensus       247 Lv~ll~~~----~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~  317 (323)
                      |..+....    +.+.++..+++++...+..-... ...+  ..+++.|++.+++.++.++..|+.++.+++...
T Consensus       500 l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~-~~~l--~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~  571 (1049)
T 3m1i_C          500 LLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAH-WNFL--RTVILKLFEFMHETHEGVQDMACDTFIKIVQKC  571 (1049)
T ss_dssp             HHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHC-HHHH--HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhH-HHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence            44433211    11334445777777665432121 1233  256777888888889999999999999999753

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=84.33  E-value=38  Score=34.37  Aligned_cols=269  Identities=9%  Similarity=-0.009  Sum_probs=139.5

Q ss_pred             HHHHHHHHhc-C---CchhHHHHHHHHHHHhcc-Chh----hHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHH
Q 020640           32 HFLSLLKKMS-A---TLPDQTEAAKELRLLTKR-MPS----FRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITT  102 (323)
Q Consensus        32 ~i~~Lv~~l~-~---~~~~~~~a~~~L~~l~~~-~~~----~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~  102 (323)
                      +.......+. +   +..+|.-|+.+|.+..+. +++    .+..+.+      .|++++..... ..+...++.+.+.+
T Consensus        41 aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~~~lr~------~ll~~l~~~~~-~~~~~~IrnKL~~~  113 (980)
T 3ibv_A           41 GWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESNLLELQMIRD------SVWSYIKELSF-LDEPAYISNAVQHL  113 (980)
T ss_dssp             HHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHHHHHHH------HHHHHHHHCCS-TTSCTHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHHHHH------HHHHHHHHhcC-CCCcHHHHHHHHHH
Confidence            3444445553 1   356677777777766541 112    2222222      24444432210 02345677777777


Q ss_pred             HHHhccccchhhhhhccCCcHHHHHHHHhcCCH-HHHHHHHHHHHHhcCC--C-C--------c-----hhhhhcc---C
Q 020640          103 LLNLSIHDNNKKLVAETPMVIPLLMDALRSGTI-ETRSNAAAALFTLSAL--D-S--------N-----KEVIGKS---G  162 (323)
Q Consensus       103 L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~-~~~~~a~~~L~~L~~~--~-~--------~-----~~~i~~~---g  162 (323)
                      +..+....-..   .. +.+++-++.++..++. ......+++|..+...  + .        .     +..+.+.   .
T Consensus       114 la~l~~~~~p~---~W-p~~i~~l~~~~~~~~~~~~~~~~LriL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~  189 (980)
T 3ibv_A          114 LTLLFLQLYPS---NW-NDFFASLQGVIAASSQSEFSNFYLKVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSD  189 (980)
T ss_dssp             HHHHHHHHTTT---TC-TTHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHH
T ss_pred             HHHHHHHhCcc---cC-chHHHHHHHHhcCCChhHHHHHHHHHHHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHH
Confidence            77776532100   11 3467777888776443 3445556666644321  0 0        0     1111111   1


Q ss_pred             ChHHHHHHhhh----cCHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcCchHHHHHHHHHHHhcC---HHHH
Q 020640          163 ALKPLIDLLDE----GHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDGVHVDELLAILAMLSTN---HRAV  235 (323)
Q Consensus       163 ~i~~Lv~lL~~----~~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~a~~~L~~l~~~---~~~~  235 (323)
                      +++....+|..    .++.++..++.+|.....--+ ...+++...++.+..++.++.+++.|+.+|..+...   ++.+
T Consensus       190 i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~-~~~i~~~~ll~~l~~~L~~~~~r~~A~ecL~ei~~k~~~~~~k  268 (980)
T 3ibv_A          190 IVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWIN-INLIVNEPCMNLLYSFLQIEELRCAACETMTEIVNKKMKPLEK  268 (980)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC-HHHHHCHHHHHHHHHHTTSHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred             HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcC-HHhhhcchHHHHHHHHcCChHHHHHHHHHHHHHHHcCCChhhH
Confidence            13333444433    577888889999887755322 334455678888888888888899999999988773   5565


Q ss_pred             HHHHhcCCHHHHHHHHhc-cCChhHHHHHHHHHHHhcc------cCh-----H---hHHHHHhhcccHHHHHHHhhcCCH
Q 020640          236 EEIGDLGGVSCMLRIIRE-STCDRNKENCIAILHTICL------SDR-----T---KWKAMREEESTHGTISKLAQDGTA  300 (323)
Q Consensus       236 ~~i~~~g~i~~Lv~ll~~-~~~~~~~~~a~~~L~~L~~------~~~-----~---~~~~~~~~~~~i~~L~~ll~~~~~  300 (323)
                      ..+++.=.+...+..+.. ..+.+..+.-+..+..++.      ..+     +   .....+  .+.++.++.+..++++
T Consensus       269 ~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l--~~ll~~lL~~~~~~~d  346 (980)
T 3ibv_A          269 LNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQL--YNLFPYLIRYLSDDYD  346 (980)
T ss_dssp             HHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHH--HHTHHHHHHHHTCSSH
T ss_pred             HHHHHHHhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHH--HHHHHHHHHHhCCCch
Confidence            555543111222221221 2224444444444333221      111     1   111222  3678888888888877


Q ss_pred             HHHHHHHHHHHHHh
Q 020640          301 RAKRKATGILERLK  314 (323)
Q Consensus       301 ~~~~~A~~~L~~l~  314 (323)
                      ++-..+...+..+.
T Consensus       347 eVs~~t~~Fw~~~l  360 (980)
T 3ibv_A          347 ETSTAVFPFLSDLL  360 (980)
T ss_dssp             HHHHTTHHHHHHHH
T ss_pred             hHHHHHHHHHHHHH
Confidence            77666655554443

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=82.62  E-value=9.9  Score=31.55  Aligned_cols=144  Identities=13%  Similarity=0.042  Sum_probs=89.3

Q ss_pred             cHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHH-HhhhcCHhHHHHHHHHHHHhcc-CCchhHHH
Q 020640          122 VIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLID-LLDEGHQSAMKDVASAIFNLCI-THENKARA  199 (323)
Q Consensus       122 ~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~-lL~~~~~~~~~~al~aL~~L~~-~~~~~~~i  199 (323)
                      .++....+.+++..+++..|+.+|..+ .  .      ....++.+.. +..+++-.+++.+..++..++. .+..+   
T Consensus        72 ~~~la~~L~~~~~deVR~~Av~lLg~~-~--~------~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~---  139 (240)
T 3l9t_A           72 IKKLAFLAYQSDVYQVRMYAVFLFGYL-S--K------DKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK---  139 (240)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHT-T--T------SHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT---
T ss_pred             HHHHHHHHHhCcchHHHHHHHHHHHhc-c--C------cHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH---
Confidence            344445566777789999999887777 2  1      1225566665 4445688999999999998874 22221   


Q ss_pred             HhhCchHHHHHHhhcC--chHHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHhcccChHh
Q 020640          200 VRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTK  277 (323)
Q Consensus       200 ~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~  277 (323)
                          .++.+.....++  .++..|...+.--+..+.-   -.+...+-.++.-+..+++..++...+..|..++..+|+.
T Consensus       140 ----~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~---k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~  212 (240)
T 3l9t_A          140 ----ALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYF---KENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDL  212 (240)
T ss_dssp             ----THHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTT---TTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHH
T ss_pred             ----HHHHHHHHhcCCCHHHHHHHHHhhHHHhccchh---hcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHH
Confidence                556677777776  4566666554432221100   0000112233333333445889999999999999999987


Q ss_pred             HHHHHhh
Q 020640          278 WKAMREE  284 (323)
Q Consensus       278 ~~~~~~~  284 (323)
                      +..++..
T Consensus       213 V~~~~~~  219 (240)
T 3l9t_A          213 VKIELKN  219 (240)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHH
Confidence            7777654

>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0

Probab=82.32  E-value=5.2  Score=30.28  Aligned_cols=72  Identities=7%  Similarity=0.097  Sum_probs=55.8

Q ss_pred             CHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 020640          243 GVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKR  315 (323)
Q Consensus       243 ~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~  315 (323)
                      ++..|.+-+... ++.++..|+.+|-.+..+........+....++..|++++...++.++++...++.....
T Consensus        43 a~rai~Krl~~~-n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~  114 (140)
T 3ldz_A           43 CLRSIMRRVNHK-DPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTD  114 (140)
T ss_dssp             HHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCC-ChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence            356677777755 488999999999888887655455555566788889998888899999999998887663

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}

Probab=81.69  E-value=53  Score=34.13  Aligned_cols=202  Identities=11%  Similarity=0.011  Sum_probs=112.5

Q ss_pred             CchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhcc------ccchhhhh
Q 020640           43 TLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSI------HDNNKKLV  116 (323)
Q Consensus        43 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~------~~~~~~~i  116 (323)
                      +...|.+|-..|..+-.. +          .+...+...|...    +.++.++..|+.+|.+.-.      .++.+..|
T Consensus        26 ~~~~r~~Ae~~L~~~~~~-p----------~~~~~~~~~L~~~----s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~I   90 (1204)
T 3a6p_A           26 TQRYRLEALKFCEEFKEK-C----------PICVPCGLRLAEK----TQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYL   90 (1204)
T ss_dssp             CHHHHHHHHHHHHHHHHH-C----------TTHHHHHHHHTST----TSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHhC-c----------hHHHHHHHHHHcc----CCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHH
Confidence            455688888888777542 2          2333344434311    5688999999999987632      12233333


Q ss_pred             hccCCcHHHHHHHHhc-------CCHHHHHHHHHHHHHhcCCCCchhhhhc-cCChHHHHHHhhhcCHhHHHHHHHHHHH
Q 020640          117 AETPMVIPLLMDALRS-------GTIETRSNAAAALFTLSALDSNKEVIGK-SGALKPLIDLLDEGHQSAMKDVASAIFN  188 (323)
Q Consensus       117 ~~~~g~i~~Lv~ll~~-------~~~~~~~~a~~~L~~L~~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~al~aL~~  188 (323)
                      -+      .++..+..       ....++...+.++..++..+-.    .+ .+.++.|++++.. +...+..++.+|..
T Consensus        91 r~------~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p----~~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~  159 (1204)
T 3a6p_A           91 KN------SVMELIANGTLNILEEENHIKDALSRIVVEMIKREWP----QHWPDMLIELDTLSKQ-GETQTELVMFILLR  159 (1204)
T ss_dssp             HH------HHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHST----TTCTTHHHHHHHHHHT-CHHHHHHHHHHHHH
T ss_pred             HH------HHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCc----ccchHHHHHHHHHhcC-CHHHHHHHHHHHHH
Confidence            32      23444432       3577888888898888754211    12 5678888888876 45667788888888


Q ss_pred             hccC---C----chhHH----HHhh---CchHHHHHHhhcC---------------------chHHHHHHHHHHHhcCHH
Q 020640          189 LCIT---H----ENKAR----AVRD---GGVSVILKKIMDG---------------------VHVDELLAILAMLSTNHR  233 (323)
Q Consensus       189 L~~~---~----~~~~~----i~~~---g~v~~Lv~ll~~~---------------------~~~~~a~~~L~~l~~~~~  233 (323)
                      |+..   .    ..+..    .+..   ..++.+..++.+.                     .+...++.++.+...--.
T Consensus       160 L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~  239 (1204)
T 3a6p_A          160 LAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVS  239 (1204)
T ss_dssp             HHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSC
T ss_pred             HHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccC
Confidence            8643   1    11111    1111   1222233333221                     123334444443333111


Q ss_pred             HHHHHHhcC--CHHHHHHHHhccCChhHHHHHHHHHHHhcccC
Q 020640          234 AVEEIGDLG--GVSCMLRIIRESTCDRNKENCIAILHTICLSD  274 (323)
Q Consensus       234 ~~~~i~~~g--~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~  274 (323)
                       -..+.+..  .++.+..++.   ++.++..|+.+|..+....
T Consensus       240 -~~~i~~~~~~ll~~l~~~l~---~~~lr~~A~ecL~~i~s~~  278 (1204)
T 3a6p_A          240 -MSHITAENCKLLEILCLLLN---EQELQLGAAECLLIAVSRK  278 (1204)
T ss_dssp             -HHHHHTTTSHHHHHHHHGGG---CTTTHHHHHHHHHHHHTCC
T ss_pred             -HHHHHhccchHHHHHHHHcC---CHHHHHHHHHHHHHHHhCC
Confidence             12233332  5666665544   2778999999999999855

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	323
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	8e-15
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	2e-11
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	1e-10
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	2e-08
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	3e-07
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	2e-06
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	3e-10
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	4e-09
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	9e-07
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	0.001
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	3e-07
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	6e-06
d1xqra1	264	a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp	5e-06
d1wa5b_	503	a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S	5e-05
d2vgla_	584	a.118.1.10 (A:) Adaptin alpha C subunit N-terminal	6e-04

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.6 bits (176), Expect = 8e-15
 Identities = 39/220 (17%), Positives = 78/220 (35%), Gaps = 11/220 (5%)

Query: 74  AIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALR-S 132
           AIP+L   L++       +  +       +  LS  + ++  +  +P ++  ++  ++ +
Sbjct: 18  AIPELTKLLNDE------DQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNT 71

Query: 133 GTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCIT 192
             +ET    A  L  LS        I KSG +  L+ +L     S +    + + NL + 
Sbjct: 72  NDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLH 131

Query: 193 HENKARAVRDGGV----SVILKKIMDGVHVDELLAILAMLSTNHRAVEEIGDLGGVSCML 248
            E    AVR  G       +L K            +  +   N  +   I   GG   ++
Sbjct: 132 QEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALV 191

Query: 249 RIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTH 288
            I+R  T ++       +L  + +    K   +       
Sbjct: 192 NIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQA 231

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.2 bits (149), Expect = 2e-11
 Identities = 24/102 (23%), Positives = 39/102 (38%), Gaps = 1/102 (0%)

Query: 88  ENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFT 147
           E      + E     L  L+   +N+ ++      IPL +  L S     +  AA  L  
Sbjct: 428 EGVRMEEIVEGCTGALHILARDVHNRIVIRGL-NTIPLFVQLLYSPIENIQRVAAGVLCE 486

Query: 148 LSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNL 189
           L+      E I   GA  PL +LL   ++      A+ +F +
Sbjct: 487 LAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.9 bits (143), Expect = 1e-10
 Identities = 20/131 (15%), Positives = 40/131 (30%), Gaps = 1/131 (0%)

Query: 85  SKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAA 144
           + C     P  ++  I  L+ L +   ++     T M              E       A
Sbjct: 384 ALCPANHAPLREQGAIPRLVQL-LVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGA 442

Query: 145 LFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGG 204
           L  L+    N+ VI     +   + LL    ++  +  A  +  L    E       +G 
Sbjct: 443 LHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGA 502

Query: 205 VSVILKKIMDG 215
            + + + +   
Sbjct: 503 TAPLTELLHSR 513

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.4 bits (126), Expect = 2e-08
 Identities = 36/240 (15%), Positives = 73/240 (30%), Gaps = 9/240 (3%)

Query: 47  QTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNL 106
             +AA  +  L+ +  + R     S   +  ++  +  +      +         TL NL
Sbjct: 34  VNKAAVMVHQLS-KKEASRHAIMRSPQMVSAIVRTMQNTN-----DVETARCTAGTLHNL 87

Query: 107 SIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDS-NKEVIGKSGALK 165
           S H      + ++   IP L+  L S        A   L  L       K  +  +G L+
Sbjct: 88  SHHREGLLAIFKSG-GIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQ 146

Query: 166 PLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDGVHVDELLAIL 225
            ++ LL++ +   +      +  L   ++     +   G    L  IM     ++LL   
Sbjct: 147 KMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTT 206

Query: 226 AMLSTNHRAVEEIGDLGGVSCM-LRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREE 284
           + +                +     +    T    +     +     LSD    +   E 
Sbjct: 207 SRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEG 266

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.5 bits (116), Expect = 3e-07
 Identities = 23/137 (16%), Positives = 46/137 (33%), Gaps = 5/137 (3%)

Query: 162 GALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIM----DGVH 217
            A+  L  LL++  Q  +   A  +  L     ++   +R   +   + + M    D   
Sbjct: 17  RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVET 76

Query: 218 VDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTK 277
                  L  LS +   +  I   GG+  +++++            I  LH + L     
Sbjct: 77  ARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDS-VLFYAITTLHNLLLHQEGA 135

Query: 278 WKAMREEESTHGTISKL 294
             A+R        ++ L
Sbjct: 136 KMAVRLAGGLQKMVALL 152

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.8 bits (109), Expect = 2e-06
 Identities = 16/79 (20%), Positives = 25/79 (31%), Gaps = 7/79 (8%)

Query: 71  SHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDAL 130
             + IP  +  L           N+Q      L  L+      + +         L + L
Sbjct: 458 GLNTIPLFVQLLYSP------IENIQRVAAGVLCELAQDKEAAEAIEAE-GATAPLTELL 510

Query: 131 RSGTIETRSNAAAALFTLS 149
            S      + AAA LF +S
Sbjct: 511 HSRNEGVATYAAAVLFRMS 529

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.3 bits (139), Expect = 3e-10
 Identities = 26/153 (16%), Positives = 53/153 (34%), Gaps = 5/153 (3%)

Query: 121 MVIPLLMDALRSGTIETRSNAAAALFTLSALDS-NKEVIGKSGALKPLIDLLDEGHQSAM 179
           + IP  +  L S   + ++  A  +      D   K+ + + G +  L+DLL   +Q+  
Sbjct: 2   LTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQ 61

Query: 180 KDVASAIFNLCITHENKARAVRDGGVSVILKKIMDGVHVDELL----AILAMLSTNHRAV 235
           +  A A+ NL           R          ++      E+      +L  LS+     
Sbjct: 62  QAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELK 121

Query: 236 EEIGDLGGVSCMLRIIRESTCDRNKENCIAILH 268
           EE+          R+I   +   +  + ++   
Sbjct: 122 EELIADALPVLADRVIIPFSGWCDGNSNMSREV 154

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.2 bits (131), Expect = 4e-09
 Identities = 29/165 (17%), Positives = 56/165 (33%), Gaps = 8/165 (4%)

Query: 75  IPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGT 134
           IP+ +  LS        +   Q      + +    D + K        I  L+D LRS  
Sbjct: 4   IPKAVQYLSSQ------DEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPN 57

Query: 135 IETRSNAAAALFTLSALDS-NKEVIGKSGALKPLIDLLDEGHQSAMKDVA-SAIFNLCIT 192
              +  AA AL  L    + NK    +   ++  + LL     + ++      ++NL  T
Sbjct: 58  QNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST 117

Query: 193 HENKARAVRDGGVSVILKKIMDGVHVDELLAILAMLSTNHRAVEE 237
            E K   + D    +  + I+      +  + ++    +      
Sbjct: 118 DELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFN 162

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (112), Expect = 9e-07
 Identities = 19/220 (8%), Positives = 59/220 (26%), Gaps = 15/220 (6%)

Query: 67  LFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLL 126
            + +         +  S + C +  +  +  +     L     +            I   
Sbjct: 229 RYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTY 288

Query: 127 MDALRSGTIETRSNAAAALFTLSALDS-------NKEVIGKSGALKPLIDLLDEGHQSAM 179
           ++ +     +    A A                 ++ +  K   L  +  LL  G+   +
Sbjct: 289 LNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVV 348

Query: 180 KDVASAIFNLCITHENKARAVRDGGVSVI--------LKKIMDGVHVDELLAILAMLSTN 231
           +  AS + N+                 V              + +       +  ++++ 
Sbjct: 349 RSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQ 408

Query: 232 HRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTIC 271
            +  ++      ++ ++ + R S   +  E    +L  + 
Sbjct: 409 PQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMW 448

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (86), Expect = 0.001
 Identities = 15/124 (12%), Positives = 40/124 (32%), Gaps = 3/124 (2%)

Query: 36  LLKKMSATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNL 95
           + + + +   D   +   L     R P    + G      P++   L+        + ++
Sbjct: 336 IARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGN--QVFPEVTRLLTSHTGNTSNSEDI 393

Query: 96  QEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRS-GTIETRSNAAAALFTLSALDSN 154
                 T+ NL            +  ++  +++  RS  + +    A   L  + +    
Sbjct: 394 LSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKEL 453

Query: 155 KEVI 158
           + V+
Sbjct: 454 QGVL 457

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.4 bits (116), Expect = 3e-07
 Identities = 27/177 (15%), Positives = 61/177 (34%), Gaps = 10/177 (5%)

Query: 119 TPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNK--EVIGKSGALKPLIDLLDEGHQ 176
               +  ++  + S  +E++  A  A   L + +     + I ++G +   +  L +   
Sbjct: 11  VNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDC 70

Query: 177 SAMK-DVASAIFNLCITHENKARAVRDGGVSVILKKIMDGVHVD-------ELLAILAML 228
           S ++ + A A+ N+      + +AV DGG       ++   H          L  I    
Sbjct: 71  SPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDG 130

Query: 229 STNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEE 285
           S     V + G +  +  +L +   ST        +    +    ++     +   E
Sbjct: 131 SAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVE 187

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.2 bits (105), Expect = 6e-06
 Identities = 20/112 (17%), Positives = 46/112 (41%), Gaps = 2/112 (1%)

Query: 86  KCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAAL 145
                   N+Q++   T+ N++    ++        ++P L+  L     +T+  AA A+
Sbjct: 279 SLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAI 338

Query: 146 FTLSALDS--NKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHEN 195
              ++  +      +   G ++PL++LL       ++ +  AI N+    E 
Sbjct: 339 TNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEK 390

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (105), Expect = 5e-06
 Identities = 30/196 (15%), Positives = 62/196 (31%), Gaps = 8/196 (4%)

Query: 124 PLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLID-LLDEGHQSAMKDV 182
           P   +A ++   + R  A   L  L     N     +   +  L+   L+ G        
Sbjct: 20  PTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRA 79

Query: 183 ASAIFNLC-ITHENKARAVRDGGVSVILKKIM----DGVHVDELLAILAMLSTNHRAVEE 237
           A  I          + + +  G +  +L+ +     D V V  L AI  ++      + +
Sbjct: 80  AQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQ 139

Query: 238 IGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQD 297
              L G S ++R +++       ++   + +   L    + K           +  L + 
Sbjct: 140 FLRLDGFSVLMRAMQQQVQKLKVKSAFLLQN--LLVGHPEHKGTLCSMGMVQQLVALVRT 197

Query: 298 GTARAKRKATGILERL 313
             +       G L  L
Sbjct: 198 EHSPFHEHVLGALCSL 213

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.4 bits (98), Expect = 5e-05
 Identities = 22/118 (18%), Positives = 46/118 (38%), Gaps = 4/118 (3%)

Query: 86  KCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAAL 145
              +    N++++   T+ N++  +  +        +IP L+  L     +T+  A  A+
Sbjct: 337 LLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAI 396

Query: 146 FTLSALDSNK----EVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARA 199
              S+    +      +   G +KPL DLL+      ++    A+ N+    E    A
Sbjct: 397 SNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEA 454

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	323
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.94
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.94
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.93
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.93
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.84
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.82
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.8
d1b3ua_	588	Constant regulatory domain of protein phosphatase	98.87
d1b3ua_	588	Constant regulatory domain of protein phosphatase	98.82
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	98.77
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	98.72
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	98.61
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.59
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	98.47
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	98.44
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	98.41
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	98.32
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	98.29
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	98.19
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	98.05
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	98.0
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	97.94
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	97.89
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	97.78
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	97.77
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	97.68
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	97.61
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	97.44
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	97.42
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	96.2
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	96.11
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	94.58
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	94.01
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	92.44
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	92.3
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	91.86
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	88.34
d1dvpa1	145	Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7	83.24
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	82.31

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=4e-27  Score=222.88  Aligned_cols=278  Identities=19%  Similarity=0.192  Sum_probs=240.0

Q ss_pred             hhhhhHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHH
Q 020640           27 EADRDHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLN  105 (323)
Q Consensus        27 ~~~~~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~  105 (323)
                      +...+++|.|+++|+ ++..++..|+..+.+++.. +..+..+....|+++.|+++|+.     .+++++++.|+.+|.+
T Consensus        13 ~~~~~aip~L~~lL~~~~~~v~~~A~~~l~~l~~~-~~~~~~~~~~~~~v~~l~~~L~~-----~~~~~~~~~a~~~L~~   86 (529)
T d1jdha_          13 ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKK-EASRHAIMRSPQMVSAIVRTMQN-----TNDVETARCTAGTLHN   86 (529)
T ss_dssp             ----CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTS-HHHHHHHHTCHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-cHHHHHHHHhhhHHHHHHHHHcC-----CCCHHHHHHHHHHHHH
Confidence            444578999999996 7788999999999999964 55666666536789999999974     4678999999999999


Q ss_pred             hccccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCC-chhhhhccCChHHHHHHhhhcCHhHHHHHHH
Q 020640          106 LSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDS-NKEVIGKSGALKPLIDLLDEGHQSAMKDVAS  184 (323)
Q Consensus       106 ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~-~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~  184 (323)
                      ++.+++++..+++.| .++.|+.+|++++++++..++++|.+++.+.+ .+..+.+.|+++.|+++|+++++.++..++.
T Consensus        87 l~~~~~~~~~i~~~g-~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~  165 (529)
T d1jdha_          87 LSHHREGLLAIFKSG-GIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTD  165 (529)
T ss_dssp             HTTSHHHHHHHHHTT-HHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHH
T ss_pred             HhCCchhHHHHHHCC-CHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHccChHHHHHHHH
Confidence            999989999999976 59999999999999999999999999987655 4666678999999999999999999999999


Q ss_pred             HHHHhccCC-chhHHHHhhCchHHHHHHhhcC---chHHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHhccCChhHH
Q 020640          185 AIFNLCITH-ENKARAVRDGGVSVILKKIMDG---VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNK  260 (323)
Q Consensus       185 aL~~L~~~~-~~~~~i~~~g~v~~Lv~ll~~~---~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~  260 (323)
                      +|.+++..+ +.+..+.+.|+++.|+.++..+   .++..+++++.+++.+++++..+++.|+++.|+.++.+++ .+++
T Consensus       166 ~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~~~~~~~~~~g~~~~L~~ll~~~~-~~~~  244 (529)
T d1jdha_         166 CLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPS-QRLV  244 (529)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSC-HHHH
T ss_pred             HHHHHhhhhhHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhccccccchhhhhhhhhhHHHHhcccc-hhhh
Confidence            999999876 4566677889999999999865   5688899999999999999999999999999999999655 8999


Q ss_pred             HHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhcc
Q 020640          261 ENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRT  316 (323)
Q Consensus       261 ~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~  316 (323)
                      .++++++.+++.....    .....++++.|++++.++++.++..|.++|.+++..
T Consensus       245 ~~a~~~l~~ls~~~~~----~~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~  296 (529)
T d1jdha_         245 QNCLWTLRNLSDAATK----QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN  296 (529)
T ss_dssp             HHHHHHHHHHHTTCTT----CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTT
T ss_pred             hhhhhHHHhccccccc----hhhhhhcchhhhhhcccccHHHHHHHHHHHHhhccc
Confidence            9999999999865532    122358999999999999999999999999999853

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=9.5e-25  Score=200.54  Aligned_cols=282  Identities=13%  Similarity=0.159  Sum_probs=235.7

Q ss_pred             hhhhHHHHHHHHhc--CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHH
Q 020640           28 ADRDHFLSLLKKMS--ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLN  105 (323)
Q Consensus        28 ~~~~~i~~Lv~~l~--~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~  105 (323)
                      ...|.+|.|+++|+  +++.+|..|+++|.+++..+++.+..+.+ .|+++.|+.+|.      ++++++++.|+.+|.|
T Consensus        53 ~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~-~~~i~~l~~~L~------~~~~~~~~~a~~~L~n  125 (434)
T d1q1sc_          53 IRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVD-GGAIPAFISLLA------SPHAHISEQAVWALGN  125 (434)
T ss_dssp             HHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHHHHHHHH-TTHHHHHHHHTT------CSCHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhhhhHhhh-ccchhhhhhccc------cCCHHHHHHHHHHHHH
Confidence            45589999999995  34678999999999999888888999999 999999999999      7789999999999999


Q ss_pred             hccccc-hhhhhhccCC----------------------------------------------cHHHHHHHHhcCCHHHH
Q 020640          106 LSIHDN-NKKLVAETPM----------------------------------------------VIPLLMDALRSGTIETR  138 (323)
Q Consensus       106 ls~~~~-~~~~i~~~~g----------------------------------------------~i~~Lv~ll~~~~~~~~  138 (323)
                      ++.+.+ .+..+.+.++                                              +++.++.++.+++++++
T Consensus       126 l~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~  205 (434)
T d1q1sc_         126 IAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVL  205 (434)
T ss_dssp             HHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHTCCCTTCCCHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred             HhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHHHhhcccccchhhhhhhHHHHHHHHHhccccchh
Confidence            986543 3333333221                                              23345556677788999


Q ss_pred             HHHHHHHHHhcCCCCc-hhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHHhccCCc-hhHHHHhhCchHHHHHHhhcC-
Q 020640          139 SNAAAALFTLSALDSN-KEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHE-NKARAVRDGGVSVILKKIMDG-  215 (323)
Q Consensus       139 ~~a~~~L~~L~~~~~~-~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~-~~~~i~~~g~v~~Lv~ll~~~-  215 (323)
                      ..++++|.+++.+++. ...+...|+++.|++++.+++..++..++.+|.+++.+++ .+..+++.|+++.++.++++. 
T Consensus       206 ~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~  285 (434)
T d1q1sc_         206 ADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPK  285 (434)
T ss_dssp             HHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSS
T ss_pred             hhHHhhhcccchhhhhhHHHHhhcccchhcccccccchhhhhhchhhhhhhHHhhhhHHHHHHHhccccchHHHhhcccc
Confidence            9999999999876654 4455668999999999999999999999999999998774 566778899999999999876 


Q ss_pred             -chHHHHHHHHHHHhc-CHHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHH
Q 020640          216 -VHVDELLAILAMLST-NHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISK  293 (323)
Q Consensus       216 -~~~~~a~~~L~~l~~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~  293 (323)
                       .++..++++|.+++. .++.+..+.+.|+++.++.++..++ .+++..|++++.+++..........+.+.|+++.|+.
T Consensus       286 ~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~~-~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~  364 (434)
T d1q1sc_         286 TNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKAD-FKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMN  364 (434)
T ss_dssp             HHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSSC-HHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHH
T ss_pred             hhhhHHHHHHHhhhccccchhHHHHhhhhhHHHHHHHHhccC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHH
Confidence             678999999999998 4677888899999999999999765 9999999999999998654333344446899999999


Q ss_pred             HhhcCCHHHHHHHHHHHHHHhcch
Q 020640          294 LAQDGTARAKRKATGILERLKRTV  317 (323)
Q Consensus       294 ll~~~~~~~~~~A~~~L~~l~~~~  317 (323)
                      ++.++++++...+.++|.++.++.
T Consensus       365 ll~~~d~~~~~~~l~~l~~ll~~~  388 (434)
T d1q1sc_         365 LLSAKDTKIIQVILDAISNIFQAA  388 (434)
T ss_dssp             HTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999998654

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=7.9e-25  Score=205.78  Aligned_cols=280  Identities=14%  Similarity=0.087  Sum_probs=242.9

Q ss_pred             hhhhHHHHHHHHhc--CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHH
Q 020640           28 ADRDHFLSLLKKMS--ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLN  105 (323)
Q Consensus        28 ~~~~~i~~Lv~~l~--~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~  105 (323)
                      .+.|.+|.|+..++  .+...+..|+++|.+++..++.....+.+ .|+++.++.+|.      +++.+++..++++|.|
T Consensus       116 i~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~~~~~-~g~i~~l~~lL~------s~~~~i~~~a~~~L~n  188 (503)
T d1wa5b_         116 IQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVD-ADAVPLFIQLLY------TGSVEVKEQAIWALGN  188 (503)
T ss_dssp             HHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTCHHHHHHHHH------HCCHHHHHHHHHHHHH
T ss_pred             HHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHh-CCChHHHHHHhc------CCChhHHHHHHHHHHH
Confidence            45689999999996  34678999999999999888888888888 999999999999      6788999999999999


Q ss_pred             hccccc-hhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhh-hhccCChHHHHHHhhhcCHhHHHHHH
Q 020640          106 LSIHDN-NKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEV-IGKSGALKPLIDLLDEGHQSAMKDVA  183 (323)
Q Consensus       106 ls~~~~-~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~-i~~~g~i~~Lv~lL~~~~~~~~~~al  183 (323)
                      ++.... .+..+...| +++.|+.++.+.+..++..++++|.+++.+...... ....++++.|+.++.++++.++..++
T Consensus       189 ia~~~~~~r~~l~~~~-~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~~~  267 (503)
T d1wa5b_         189 VAGDSTDYRDYVLQCN-AMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDAC  267 (503)
T ss_dssp             HHTTCHHHHHHHHHTT-CHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHH
T ss_pred             HhhhhHHHHHHHHhhc-ccccchhhcccCCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence            987654 678888865 699999999999999999999999999976554333 34478999999999999999999999


Q ss_pred             HHHHHhccCCch-hHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcC-HHHHHHHHhcCCHHHHHHHHhccCChhH
Q 020640          184 SAIFNLCITHEN-KARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTN-HRAVEEIGDLGGVSCMLRIIRESTCDRN  259 (323)
Q Consensus       184 ~aL~~L~~~~~~-~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~  259 (323)
                      ++|.+++..++. ...+++.|+++.++.++.++  .++..++.++.+++.+ ++....+.+.|+++.|..++++++ +.+
T Consensus       268 ~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~~~~~~~~~~~~l~~l~~ll~~~~-~~i  346 (503)
T d1wa5b_         268 WAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPK-ENI  346 (503)
T ss_dssp             HHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSC-HHH
T ss_pred             HHHHhhccCCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHHHHHHHHHhhhccchHHHHHHHhcCCC-HHH
Confidence            999999987754 46678889999999999877  5788999999999986 566667788999999999998654 889


Q ss_pred             HHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhcch
Q 020640          260 KENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTV  317 (323)
Q Consensus       260 ~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~  317 (323)
                      +..++++|.+++..++.....+ .+.++++.+++++.+++.+++..|.++|.++..+.
T Consensus       347 ~~~~~~~l~nl~~~~~~~~~~i-~~~~~l~~li~~l~~~~~~v~~~a~~~l~nl~~~~  403 (503)
T d1wa5b_         347 KKEACWTISNITAGNTEQIQAV-IDANLIPPLVKLLEVAEYKTKKEACWAISNASSGG  403 (503)
T ss_dssp             HHHHHHHHHHHTTSCHHHHHHH-HHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhhccHHHHHHH-HHccccchhHHhcccCChhHHHHHHHHHHHHHhcc
Confidence            9999999999999887754444 47899999999999999999999999999998643

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=8.2e-25  Score=206.84  Aligned_cols=274  Identities=17%  Similarity=0.147  Sum_probs=235.1

Q ss_pred             hhHHHHHHHHhc--CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhc
Q 020640           30 RDHFLSLLKKMS--ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLS  107 (323)
Q Consensus        30 ~~~i~~Lv~~l~--~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls  107 (323)
                      .+.++.+++.|.  ++.+.+..|+.+|.+++. +++++..+.+ .|+++.|+.+|+      ++++.++..|+.+|.+++
T Consensus        58 ~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~-~~~~~~~i~~-~g~i~~Li~lL~------~~~~~v~~~a~~aL~~l~  129 (529)
T d1jdha_          58 PQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HREGLLAIFK-SGGIPALVKMLG------SPVDSVLFYAITTLHNLL  129 (529)
T ss_dssp             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-SHHHHHHHHH-TTHHHHHHHHTT------CSCHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-CchhHHHHHH-CCCHHHHHHHhC------CCCHHHHHHHHHHHHHhh
Confidence            468999999995  567889999999999995 7888999999 999999999999      778999999999999999


Q ss_pred             cccch-hhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC-CchhhhhccCChHHHHHHhhhc-CHhHHHHHHH
Q 020640          108 IHDNN-KKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALD-SNKEVIGKSGALKPLIDLLDEG-HQSAMKDVAS  184 (323)
Q Consensus       108 ~~~~~-~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~-~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~al~  184 (323)
                      .+.+. +..+.+. |+++.|+.++++++++++..++++|.+++..+ +++..+.+.|+++.|+.++... ...++..+..
T Consensus       130 ~~~~~~~~~~~~~-g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~  208 (529)
T d1jdha_         130 LHQEGAKMAVRLA-GGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSR  208 (529)
T ss_dssp             HHCTTHHHHHHHH-THHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred             cccchhhhHHHhc-CCchHHHHHHHccChHHHHHHHHHHHHHhhhhhHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHH
Confidence            88774 5556565 57999999999999999999999999998654 4567777799999999999875 5678999999


Q ss_pred             HHHHhccCCchhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHhccCChhHHHH
Q 020640          185 AIFNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKEN  262 (323)
Q Consensus       185 aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~  262 (323)
                      ++.+++.+.+++..+++.|+++.|+.++.++  .++..++++|.+++.....  .....|+++.|++++++++ ..+++.
T Consensus       209 ~l~~ls~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls~~~~~--~~~~~~~i~~Lv~ll~~~~-~~~~~~  285 (529)
T d1jdha_         209 VLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK--QEGMEGLLGTLVQLLGSDD-INVVTC  285 (529)
T ss_dssp             HHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTT--CSCCHHHHHHHHHHTTCSC-HHHHHH
T ss_pred             HHhhhhccccccchhhhhhhhhhHHHHhcccchhhhhhhhhHHHhccccccc--hhhhhhcchhhhhhccccc-HHHHHH
Confidence            9999999999999999999999999999876  5788999999999865332  2233578999999999654 889999


Q ss_pred             HHHHHHHhcccChHhHHHHHhhcccHHHHHHHhh--cCCHHHHHHHHHHHHHHhcc
Q 020640          263 CIAILHTICLSDRTKWKAMREEESTHGTISKLAQ--DGTARAKRKATGILERLKRT  316 (323)
Q Consensus       263 a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~--~~~~~~~~~A~~~L~~l~~~  316 (323)
                      |+++|++++..++. .+.++.+.++++.|+.++.  ++.+.+++.|.++|++++..
T Consensus       286 a~~~L~~l~~~~~~-~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~aL~~l~~~  340 (529)
T d1jdha_         286 AAGILSNLTCNNYK-NKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSR  340 (529)
T ss_dssp             HHHHHHHHTTTCHH-HHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSS
T ss_pred             HHHHHHhhccchhH-HHHHHHHhhhHHHHHHHHHhhhcchhHHHHHHHHhhcccch
Confidence            99999999998866 4556667899999999874  35788999999999999843

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=7.7e-24  Score=194.41  Aligned_cols=278  Identities=17%  Similarity=0.174  Sum_probs=229.4

Q ss_pred             hHHHHHHHHhc-CCchhHHHHHHHHHHHhccChh-hHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhcc
Q 020640           31 DHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPS-FRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSI  108 (323)
Q Consensus        31 ~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~-~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~  108 (323)
                      +.|+.+++.+. ++++.+..|+..++++...+.+ ....+.+ .|++|.|+++|++     +++++++..++.+|.+++.
T Consensus        13 ~~i~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~-~g~i~~Lv~lL~~-----~~~~~v~~~a~~~L~~la~   86 (434)
T d1q1sc_          13 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIR-AGLIPKFVSFLGK-----TDCSPIQFESAWALTNIAS   86 (434)
T ss_dssp             CCHHHHHHHHTSSCHHHHHHHHHHHHHHHHSSSCCCHHHHHH-TTCHHHHHHHTTC-----GGGHHHHHHHHHHHHHHHT
T ss_pred             hhHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHH-CCCHHHHHHHHcc-----CCCHHHHHHHHHHHHHHhc
Confidence            78999999995 7799999999999998754333 2456888 8999999999974     4468899999999999987


Q ss_pred             ccc-hhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCC-chhhhhccCChHHHHHH----------------
Q 020640          109 HDN-NKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDS-NKEVIGKSGALKPLIDL----------------  170 (323)
Q Consensus       109 ~~~-~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~-~~~~i~~~g~i~~Lv~l----------------  170 (323)
                      ..+ .+..+.+.| +++.++.+++++++++++.++++|.+++.+.+ .+..+.+.|+++.|+.+                
T Consensus        87 ~~~~~~~~i~~~~-~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~  165 (434)
T d1q1sc_          87 GTSEQTKAVVDGG-AIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRN  165 (434)
T ss_dssp             SCHHHHHHHHHTT-HHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHH
T ss_pred             CChhhhhHhhhcc-chhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHH
Confidence            655 677777754 79999999999999999999999999986543 34444445555555444                


Q ss_pred             -------------------------------hhhcCHhHHHHHHHHHHHhccCCchhH-HHHhhCchHHHHHHhhcC--c
Q 020640          171 -------------------------------LDEGHQSAMKDVASAIFNLCITHENKA-RAVRDGGVSVILKKIMDG--V  216 (323)
Q Consensus       171 -------------------------------L~~~~~~~~~~al~aL~~L~~~~~~~~-~i~~~g~v~~Lv~ll~~~--~  216 (323)
                                                     +.++++.++..++++|.+|+..++... .+...|+++.|+.+++++  .
T Consensus       166 ~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~  245 (434)
T d1q1sc_         166 LTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELP  245 (434)
T ss_dssp             HHHHHHHHTCCCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHH
T ss_pred             HHHHHHHHhhcccccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccchhhhhhHHHHhhcccchhcccccccchhh
Confidence                                           334577888889999999998775444 456679999999999877  6


Q ss_pred             hHHHHHHHHHHHhcC-HHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHh
Q 020640          217 HVDELLAILAMLSTN-HRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLA  295 (323)
Q Consensus       217 ~~~~a~~~L~~l~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll  295 (323)
                      ++..++.+|.+++.+ ++.+..+++.|+++.|+.++++.+ +.++..++++|.+++...++. ...+.+.|+++.++.++
T Consensus       246 ~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~-~~~i~~~~~i~~li~~l  323 (434)
T d1q1sc_         246 IVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPK-TNIQKEATWTMSNITAGRQDQ-IQQVVNHGLVPFLVGVL  323 (434)
T ss_dssp             HHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSS-HHHHHHHHHHHHHHTTSCHHH-HHHHHHTTCHHHHHHHH
T ss_pred             hhhchhhhhhhHHhhhhHHHHHHHhccccchHHHhhcccc-hhhhHHHHHHHhhhccccchh-HHHHhhhhhHHHHHHHH
Confidence            789999999999984 677888999999999999999654 889999999999999988664 45555789999999999


Q ss_pred             hcCCHHHHHHHHHHHHHHhcch
Q 020640          296 QDGTARAKRKATGILERLKRTV  317 (323)
Q Consensus       296 ~~~~~~~~~~A~~~L~~l~~~~  317 (323)
                      .+++.+++..|.++|.++..+.
T Consensus       324 ~~~~~~v~~~a~~~l~nl~~~~  345 (434)
T d1q1sc_         324 SKADFKTQKEAAWAITNYTSGG  345 (434)
T ss_dssp             HSSCHHHHHHHHHHHHHHHHHS
T ss_pred             hccChHHHHHHHHHHHHHHhcC
Confidence            9999999999999999998653

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=3e-23  Score=194.88  Aligned_cols=281  Identities=13%  Similarity=0.114  Sum_probs=241.0

Q ss_pred             hhhhHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHh
Q 020640           28 ADRDHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNL  106 (323)
Q Consensus        28 ~~~~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~l  106 (323)
                      .+.|.++.++.++. ++.+++..|+++|.|++..++.+|..+.+ .|+++.|+.++.      +.++.++..++++|.++
T Consensus       159 ~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~-~~~~~~L~~ll~------~~~~~~~~~~~~~l~nl  231 (503)
T d1wa5b_         159 VDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQ-CNAMEPILGLFN------SNKPSLIRTATWTLSNL  231 (503)
T ss_dssp             HHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTCHHHHHHGGG------SCCHHHHHHHHHHHHHH
T ss_pred             HhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHh-hcccccchhhcc------cCCHHHHHHHHHHHHHH
Confidence            45678999999995 67889999999999999888999999999 999999999998      66889999999999999


Q ss_pred             ccccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCc-hhhhhccCChHHHHHHhhhcCHhHHHHHHHH
Q 020640          107 SIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSN-KEVIGKSGALKPLIDLLDEGHQSAMKDVASA  185 (323)
Q Consensus       107 s~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~-~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~a  185 (323)
                      +........+....++++.++.++.+.+++++..++++|.+++...+. ...+.+.|+++.++.++.+++..++..++.+
T Consensus       232 ~~~~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~  311 (503)
T d1wa5b_         232 CRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRA  311 (503)
T ss_dssp             HCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHH
T ss_pred             hcCCccchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHH
Confidence            977654333332335799999999999999999999999999976544 5667789999999999999999999999999


Q ss_pred             HHHhccCCchhH-HHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhc-CHHHHHHHHhcCCHHHHHHHHhccCChhHHH
Q 020640          186 IFNLCITHENKA-RAVRDGGVSVILKKIMDG--VHVDELLAILAMLST-NHRAVEEIGDLGGVSCMLRIIRESTCDRNKE  261 (323)
Q Consensus       186 L~~L~~~~~~~~-~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~  261 (323)
                      |.+++.+.+... .+.+.|+++.+..+++++  .++..++++|.|++. +++....+.+.|+++.++.++..++ .+++.
T Consensus       312 l~nl~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~~~~~~~~~i~~~~~l~~li~~l~~~~-~~v~~  390 (503)
T d1wa5b_         312 VGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAE-YKTKK  390 (503)
T ss_dssp             HHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSC-HHHHH
T ss_pred             HHHHHHHHHHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhhccHHHHHHHHHccccchhHHhcccCC-hhHHH
Confidence            999998776544 456779999999999877  578999999999988 4778888899999999999999765 89999


Q ss_pred             HHHHHHHHhcccCh---HhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhcch
Q 020640          262 NCIAILHTICLSDR---TKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTV  317 (323)
Q Consensus       262 ~a~~~L~~L~~~~~---~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~  317 (323)
                      .|+++|.+++....   +.... +.+.|+++.|+.++.+.++++...+..+|.++.++.
T Consensus       391 ~a~~~l~nl~~~~~~~~~~~~~-l~~~~~l~~l~~~L~~~d~~~~~~~L~~l~~ll~~~  448 (503)
T d1wa5b_         391 EACWAISNASSGGLQRPDIIRY-LVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMG  448 (503)
T ss_dssp             HHHHHHHHHHHHTTTCTHHHHH-HHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcccccHHHHHH-HHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence            99999999987542   22333 346899999999999999999999999999887543

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=9e-23  Score=185.81  Aligned_cols=280  Identities=17%  Similarity=0.174  Sum_probs=221.2

Q ss_pred             hHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccc
Q 020640           31 DHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIH  109 (323)
Q Consensus        31 ~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~  109 (323)
                      ..||.||++|+ +++++|..|+.+|.++|.+++++|..+.+ .|+||.|+++|+      +++++++..|+.+|.+|+.+
T Consensus         2 ~~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~-~g~i~~Lv~lL~------~~~~~v~~~a~~aL~~L~~~   74 (457)
T d1xm9a1           2 LTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQ-LGGICKLVDLLR------SPNQNVQQAAAGALRNLVFR   74 (457)
T ss_dssp             CCHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHH-TTHHHHHHHHTT------SSCHHHHHHHHHHHHHHHSS
T ss_pred             CCHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH-CCcHHHHHHHHC------CCCHHHHHHHHHHHHHHHcC
Confidence            36899999996 78999999999999999888999999999 999999999999      78999999999999999965


Q ss_pred             c-chhhhhhccCCcHHHHHHHHhc-CCHHHHHHHHHHHHHhcCCCCc---------------------------------
Q 020640          110 D-NNKKLVAETPMVIPLLMDALRS-GTIETRSNAAAALFTLSALDSN---------------------------------  154 (323)
Q Consensus       110 ~-~~~~~i~~~~g~i~~Lv~ll~~-~~~~~~~~a~~~L~~L~~~~~~---------------------------------  154 (323)
                      + +++..+.+.|| ++.++.++.+ .+++++..++++|.+++..+..                                 
T Consensus        75 ~~~~~~~i~~~g~-v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  153 (457)
T d1xm9a1          75 STTNKLETRRQNG-IREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSRE  153 (457)
T ss_dssp             CHHHHHHHHHTTC-HHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------
T ss_pred             CHHHHHHHHHCCC-hHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHHHHhcccHHHHHHHHhhhhhhhcchhhhhcc
Confidence            4 47888888765 8999998865 5778888888888888654322                                 


Q ss_pred             -----------------------hhhhhc-cCChHHHHHHhhh-------------------------------------
Q 020640          155 -----------------------KEVIGK-SGALKPLIDLLDE-------------------------------------  173 (323)
Q Consensus       155 -----------------------~~~i~~-~g~i~~Lv~lL~~-------------------------------------  173 (323)
                                             +..... .|+++.|+.++..                                     
T Consensus       154 ~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  233 (457)
T d1xm9a1         154 VVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQL  233 (457)
T ss_dssp             CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHH
T ss_pred             cccHHHHHHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Confidence                                   111222 4566766655421                                     


Q ss_pred             --------------------------------------------------------------cCHhHHHHHHHHHHHhcc
Q 020640          174 --------------------------------------------------------------GHQSAMKDVASAIFNLCI  191 (323)
Q Consensus       174 --------------------------------------------------------------~~~~~~~~al~aL~~L~~  191 (323)
                                                                                    .++.....+..++.+++.
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~  313 (457)
T d1xm9a1         234 EYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTA  313 (457)
T ss_dssp             HHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT
T ss_pred             HhhhhhhhhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhh
Confidence                                                                          123344556666777766


Q ss_pred             CCch------hHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHhccC-----Chh
Q 020640          192 THEN------KARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIREST-----CDR  258 (323)
Q Consensus       192 ~~~~------~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~~~-----~~~  258 (323)
                      ....      +..+.+.|+++.|+.++.++  .++..++++|.+++.+++++..+.+ ++++.++.++....     ++.
T Consensus       314 ~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~~~~~~i~~-~~i~~li~~L~~~~~~~~~~~~  392 (457)
T d1xm9a1         314 SKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGN-QVFPEVTRLLTSHTGNTSNSED  392 (457)
T ss_dssp             CSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHH-HTHHHHHHTTTSCCSCSTTHHH
T ss_pred             ccccchHHHHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhChhHHHHHHH-hhHHHHHHHHhccccCcCCcHH
Confidence            5431      22334568999999999877  6799999999999999999888765 57999999997422     256


Q ss_pred             HHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcC-CHHHHHHHHHHHHHHhcchhhc
Q 020640          259 NKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDG-TARAKRKATGILERLKRTVNLT  320 (323)
Q Consensus       259 ~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~~A~~~L~~l~~~~~~~  320 (323)
                      ++..++.+|.+++..+++.. +.+.+.|+++.|++++++. ++.+++.|..+|.+|..+...+
T Consensus       393 v~~~a~~~L~~l~~~~~~~~-~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~~~~~~~  454 (457)
T d1xm9a1         393 ILSSACYTVRNLMASQPQLA-KQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKELQ  454 (457)
T ss_dssp             HHHHHHHHHHHHHTTCTHHH-HHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTTCS
T ss_pred             HHHHHHHHHHHHhcCCHHHH-HHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHcCHhhH
Confidence            89999999999998887654 4555789999999999875 7899999999999998877654

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=1.2e-19  Score=156.32  Aligned_cols=191  Identities=20%  Similarity=0.191  Sum_probs=166.6

Q ss_pred             CCHHHHHHHHHHHHHhccccchhhhhhccCCcHHHHH-HHHhcCCHHHHHHHHHHHHHhcCCC-CchhhhhccCChHHHH
Q 020640           91 INPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLM-DALRSGTIETRSNAAAALFTLSALD-SNKEVIGKSGALKPLI  168 (323)
Q Consensus        91 ~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv-~ll~~~~~~~~~~a~~~L~~L~~~~-~~~~~i~~~g~i~~Lv  168 (323)
                      .+.+.+..|+.+|.+++.+.+++..+...|| ++.++ .++.+++++++..|+++|.+++.+. ..+..+.+.|+++.|+
T Consensus        29 ~~~~~~~~Al~~L~~L~~~~d~a~~l~~~gg-~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv  107 (264)
T d1xqra1          29 ADQQEREGALELLADLCENMDNAADFCQLSG-MHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLL  107 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHTSHHHHHHHHHTTH-HHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHcCHHHHHHHHHcCC-HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHH
Confidence            3578899999999999988889999999887 66565 5788899999999999999999765 4677788899999999


Q ss_pred             HHhhh-cCHhHHHHHHHHHHHhccCCc-hhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhc-CHHHHHHHHhcCC
Q 020640          169 DLLDE-GHQSAMKDVASAIFNLCITHE-NKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLST-NHRAVEEIGDLGG  243 (323)
Q Consensus       169 ~lL~~-~~~~~~~~al~aL~~L~~~~~-~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~-~~~~~~~i~~~g~  243 (323)
                      +++.+ .++.++..++++|.+++.+++ ++..+...|+++.|+.++.++  .++..++++|.+++. +++.+..+.+.|+
T Consensus       108 ~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~  187 (264)
T d1xqra1         108 RLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGM  187 (264)
T ss_dssp             HHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTH
T ss_pred             HHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHhhh
Confidence            99976 578899999999999998775 566678889999999999987  678999999999987 6899999999999


Q ss_pred             HHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHh
Q 020640          244 VSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMRE  283 (323)
Q Consensus       244 i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~  283 (323)
                      ++.|+.++++++ +.+++.|+++|.+|+...+...+.+..
T Consensus       188 v~~L~~lL~~~~-~~~~~~a~~aL~~L~~~~~~~~~~~~~  226 (264)
T d1xqra1         188 VQQLVALVRTEH-SPFHEHVLGALCSLVTDFPQGVRECRE  226 (264)
T ss_dssp             HHHHHHHHTSCC-STHHHHHHHHHHHHHTTCHHHHHHHHC
T ss_pred             HHHHHHHHcCCC-HHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            999999999665 999999999999999988876655543

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1.9e-18  Score=148.69  Aligned_cols=188  Identities=17%  Similarity=0.098  Sum_probs=162.2

Q ss_pred             chhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHH-hhcccccCCCCCHHHHHHHHHHHHHhccccc-hhhhhhccCC
Q 020640           44 LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLS-PLSESKCENGINPNLQEDVITTLLNLSIHDN-NKKLVAETPM  121 (323)
Q Consensus        44 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~-lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~-~~~~i~~~~g  121 (323)
                      .+.+..|+..|.+++ .+.+++..+.. .|+++.++. +|+      +++++++..|+.+|.+++.+++ .+..+.+.+ 
T Consensus        31 ~~~~~~Al~~L~~L~-~~~d~a~~l~~-~gg~~~ll~~ll~------s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~-  101 (264)
T d1xqra1          31 QQEREGALELLADLC-ENMDNAADFCQ-LSGMHLLVGRYLE------AGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLG-  101 (264)
T ss_dssp             HHHHHHHHHHHHHHH-TSHHHHHHHHH-TTHHHHHHHTTTT------CSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHHHH-cCHHHHHHHHH-cCCHHHHHHHHhC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-
Confidence            557888999999999 57889999999 999999986 566      7789999999999999998665 677777765 


Q ss_pred             cHHHHHHHHhc-CCHHHHHHHHHHHHHhcCCC-CchhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHHhccCC-chhHH
Q 020640          122 VIPLLMDALRS-GTIETRSNAAAALFTLSALD-SNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITH-ENKAR  198 (323)
Q Consensus       122 ~i~~Lv~ll~~-~~~~~~~~a~~~L~~L~~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~-~~~~~  198 (323)
                      +++.|+.++.+ .++.++..++++|.+++.+. +++..+...|+++.|++++.+++..++..++++|++|+..+ +.+..
T Consensus       102 ~i~~Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~  181 (264)
T d1xqra1         102 ALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGT  181 (264)
T ss_dssp             HHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred             chHHHHHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHH
Confidence            69999999975 57899999999999998655 45777788999999999999999999999999999998754 67788


Q ss_pred             HHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcC-HHHHHHHHh
Q 020640          199 AVRDGGVSVILKKIMDG--VHVDELLAILAMLSTN-HRAVEEIGD  240 (323)
Q Consensus       199 i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~-~~~~~~i~~  240 (323)
                      +.+.|+++.|+.++.++  .+++.++++|.+|+.+ +.....+..
T Consensus       182 ~~~~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~  226 (264)
T d1xqra1         182 LCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECRE  226 (264)
T ss_dssp             HHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHC
T ss_pred             HHHhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            88899999999999876  7899999999999985 556555554

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=5.9e-18  Score=153.44  Aligned_cols=238  Identities=21%  Similarity=0.255  Sum_probs=179.5

Q ss_pred             CCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhcccc-chhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcC-
Q 020640           73 DAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHD-NNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSA-  150 (323)
Q Consensus        73 g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~-~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~-  150 (323)
                      +.||.|+++|+      +++++++..|+.+|.|++..+ ++|..+.+.| .+|.|+++|++++++++..++++|.+|+. 
T Consensus         2 ~~ip~lv~~L~------~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g-~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~   74 (457)
T d1xm9a1           2 LTIPKAVQYLS------SQDEKYQAIGAYYIQHTCFQDESAKQQVYQLG-GICKLVDLLRSPNQNVQQAAAGALRNLVFR   74 (457)
T ss_dssp             CCHHHHHHHHH------SSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTT-HHHHHHHHTTSSCHHHHHHHHHHHHHHHSS
T ss_pred             CCHHHHHHHhC------CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCC-cHHHHHHHHCCCCHHHHHHHHHHHHHHHcC
Confidence            46999999999      789999999999999999754 5899999976 59999999999999999999999999984 


Q ss_pred             CCCchhhhhccCChHHHHHHhhh-cCHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhh---------------c
Q 020640          151 LDSNKEVIGKSGALKPLIDLLDE-GHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIM---------------D  214 (323)
Q Consensus       151 ~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~---------------~  214 (323)
                      +++++..+.+.|+++.|++++.. +++.++..++++|++++.....+......|+ +.++..+.               .
T Consensus        75 ~~~~~~~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~  153 (457)
T d1xm9a1          75 STTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADAL-PVLADRVIIPFSGWCDGNSNMSRE  153 (457)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHH-HHHHHHTTHHHHTCC---------
T ss_pred             CHHHHHHHHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHHHHhccc-HHHHHHHHhhhhhhhcchhhhhcc
Confidence            56678899999999999999876 5788999999999999988776665555433 33322221               0


Q ss_pred             ---CchHHHHHHHHHHHhcCHHHHHHHHhc-CCHHH--------------------------------------------
Q 020640          215 ---GVHVDELLAILAMLSTNHRAVEEIGDL-GGVSC--------------------------------------------  246 (323)
Q Consensus       215 ---~~~~~~a~~~L~~l~~~~~~~~~i~~~-g~i~~--------------------------------------------  246 (323)
                         ..++..++++|.+++.+++++..+... |+++.                                            
T Consensus       154 ~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  233 (457)
T d1xm9a1         154 VVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQL  233 (457)
T ss_dssp             CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHH
T ss_pred             cccHHHHHHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Confidence               034555666666666655554444332 33444                                            


Q ss_pred             ------------------------------------------------------HHHHHhccCChhHHHHHHHHHHHhcc
Q 020640          247 ------------------------------------------------------MLRIIRESTCDRNKENCIAILHTICL  272 (323)
Q Consensus       247 ------------------------------------------------------Lv~ll~~~~~~~~~~~a~~~L~~L~~  272 (323)
                                                                            ++.++....++.+++.+..++.+++.
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~  313 (457)
T d1xm9a1         234 EYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTA  313 (457)
T ss_dssp             HHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT
T ss_pred             HhhhhhhhhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhh
Confidence                                                                  44444433335667777888888876


Q ss_pred             cChH----hHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhcchh
Q 020640          273 SDRT----KWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTVN  318 (323)
Q Consensus       273 ~~~~----~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~  318 (323)
                      ....    ..+..+.+.++++.|++++.++++.++..|.++|.+|+....
T Consensus       314 ~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~~  363 (457)
T d1xm9a1         314 SKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPL  363 (457)
T ss_dssp             CSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGG
T ss_pred             ccccchHHHHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhChh
Confidence            5432    234555678999999999999999999999999999987543

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=2.1e-07  Score=87.04  Aligned_cols=219  Identities=11%  Similarity=0.061  Sum_probs=155.3

Q ss_pred             HHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCc
Q 020640           75 IPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSN  154 (323)
Q Consensus        75 i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~  154 (323)
                      ++.+..++.      +++..++..|+.+|..+....+. ..+..  -+.|.+..+..+.....+..++..+..+......
T Consensus        89 l~~l~~l~~------~~~~~Vr~~a~~~l~~i~~~~~~-~~~~~--~l~p~i~~L~~~~~~~~r~~a~~ll~~~~~~~~~  159 (588)
T d1b3ua_          89 LPPLESLAT------VEETVVRDKAVESLRAISHEHSP-SDLEA--HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSS  159 (588)
T ss_dssp             HHHHHHHTT------SSCHHHHHHHHHHHHHHHTTSCH-HHHHH--THHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCH
T ss_pred             HHHHHHHcc------CCCHHHHHHHHHHHHHHHHhCCH-HHHHH--HHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhH
Confidence            444545555      67888999999999888654332 22222  2567666777777777888888888887654322


Q ss_pred             hhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcC-
Q 020640          155 KEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTN-  231 (323)
Q Consensus       155 ~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~-  231 (323)
                      .   .....++.+.+++.+.++.++..++.++..++..-...  ......++.+..++++.  .++..++.++..++.. 
T Consensus       160 ~---~~~~l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~~~--~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~i~~~~  234 (588)
T d1b3ua_         160 A---VKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD--NVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLL  234 (588)
T ss_dssp             H---HHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH--HHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHS
T ss_pred             H---HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcHH--HHHHHHHHHHHHHhcCCchhhHHHHHHHHHHhhccC
Confidence            1   11235778888889999999999999999998754422  22334667788888776  5788888888888762 


Q ss_pred             -HHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHH
Q 020640          232 -HRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGIL  310 (323)
Q Consensus       232 -~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L  310 (323)
                       ++....    ..++.+..++++.+ ..++..++.+|..++..-..   ... ....++.+..++.+.+++++..|...|
T Consensus       235 ~~~~~~~----~i~~~l~~~~~D~~-~~Vr~~~~~~l~~l~~~~~~---~~~-~~~l~~~l~~ll~d~~~~vr~~a~~~l  305 (588)
T d1b3ua_         235 PQEDLEA----LVMPTLRQAAEDKS-WRVRYMVADKFTELQKAVGP---EIT-KTDLVPAFQNLMKDCEAEVRAAASHKV  305 (588)
T ss_dssp             CHHHHHH----HTHHHHHHHHTCSS-HHHHHHHHHTHHHHHHHHCH---HHH-HHTHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred             CHHHHHH----HHHHHHHHhccccc-HHHHHHHHHhHHHHHHHhhh---hhh-hhhhhHHHHHHHhccchHHHHHHHHHH
Confidence             332222    25788888888654 88999999999998764322   222 246889999999999999999999999


Q ss_pred             HHHhcc
Q 020640          311 ERLKRT  316 (323)
Q Consensus       311 ~~l~~~  316 (323)
                      ..++..
T Consensus       306 ~~~~~~  311 (588)
T d1b3ua_         306 KEFCEN  311 (588)
T ss_dssp             HHHHHT
T ss_pred             HHHHHH
Confidence            888753

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=2.7e-07  Score=86.23  Aligned_cols=263  Identities=11%  Similarity=0.038  Sum_probs=177.4

Q ss_pred             hHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccc
Q 020640           31 DHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIH  109 (323)
Q Consensus        31 ~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~  109 (323)
                      ..++.+..++. ++..+|..|+.++..++..-..  ..+ . ...+|.+..+..      ++....+..|+..+..+...
T Consensus        87 ~ll~~l~~l~~~~~~~Vr~~a~~~l~~i~~~~~~--~~~-~-~~l~p~i~~L~~------~~~~~~r~~a~~ll~~~~~~  156 (588)
T d1b3ua_          87 CLLPPLESLATVEETVVRDKAVESLRAISHEHSP--SDL-E-AHFVPLVKRLAG------GDWFTSRTSACGLFSVCYPR  156 (588)
T ss_dssp             GGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCH--HHH-H-HTHHHHHHHHHT------CSSHHHHHHHGGGHHHHTTT
T ss_pred             HHHHHHHHHccCCCHHHHHHHHHHHHHHHHhCCH--HHH-H-HHHHHHHHHHhc------ccchHHHHHHHHHHHHHHHH
Confidence            35555555554 5578899999999999864332  222 2 234454455555      55667788888877777543


Q ss_pred             cchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHHh
Q 020640          110 DNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNL  189 (323)
Q Consensus       110 ~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L  189 (323)
                      ....  ...  .+.+.+..++++.++.+++.++.++..++..-..  .......++.+..++++++..++..++.++..+
T Consensus       157 ~~~~--~~~--~l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~~--~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~i  230 (588)
T d1b3ua_         157 VSSA--VKA--ELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLEL--DNVKSEIIPMFSNLASDEQDSVRLLAVEACVNI  230 (588)
T ss_dssp             SCHH--HHH--HHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCH--HHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHH
T ss_pred             hhHH--HHH--HHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcH--HHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHh
Confidence            3321  112  1467788888999999999999999999864332  222345678888888889999999999999988


Q ss_pred             ccCCchhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHH
Q 020640          190 CITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAIL  267 (323)
Q Consensus       190 ~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L  267 (323)
                      +...+...  .....++.+..++.+.  .++..++.+|.+++..-.  ..+.....++.+..++++.+ ..++..|+..+
T Consensus       231 ~~~~~~~~--~~~~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~--~~~~~~~l~~~l~~ll~d~~-~~vr~~a~~~l  305 (588)
T d1b3ua_         231 AQLLPQED--LEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVG--PEITKTDLVPAFQNLMKDCE-AEVRAAASHKV  305 (588)
T ss_dssp             HHHSCHHH--HHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHC--HHHHHHTHHHHHHHHHTCSS-HHHHHHHHHHH
T ss_pred             hccCCHHH--HHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhh--hhhhhhhhhHHHHHHHhccc-hHHHHHHHHHH
Confidence            75433211  1123677888888776  578888888888876311  11233456889999999665 88999999999


Q ss_pred             HHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHh
Q 020640          268 HTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLK  314 (323)
Q Consensus       268 ~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~  314 (323)
                      ..++..-......-..-...++.+...+.+.++.++..+...+..+.
T Consensus       306 ~~~~~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~~~~~l~~~~  352 (588)
T d1b3ua_         306 KEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLS  352 (588)
T ss_dssp             HHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGH
T ss_pred             HHHHHHHhhhhhhhhhHHHHHHHHHHhhcCCChHHHHHHHHHHhhhh
Confidence            98876432211111112467777888888888888887776666554

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=98.72  E-value=1.4e-06  Score=72.75  Aligned_cols=228  Identities=11%  Similarity=-0.005  Sum_probs=146.4

Q ss_pred             hHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccc
Q 020640           31 DHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIH  109 (323)
Q Consensus        31 ~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~  109 (323)
                      ...+.|++.|+ .++.+|..|+..|..+..            ..+++.|+++++      ++++.++..|+.+|..+...
T Consensus        19 ~~~~~L~~~L~d~~~~vR~~A~~~L~~~~~------------~~~~~~l~~~l~------d~~~~vr~~a~~aL~~l~~~   80 (276)
T d1oyza_          19 LNDDELFRLLDDHNSLKRISSARVLQLRGG------------QDAVRLAIEFCS------DKNYIRRDIGAFILGQIKIC   80 (276)
T ss_dssp             SCHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------HHHHHHHHHHHT------CSSHHHHHHHHHHHHHSCCC
T ss_pred             CCHHHHHHHhcCCCHHHHHHHHHHHHhhCC------------HhHHHHHHHHHc------CCCHHHHHHHHHHHHHhccc
Confidence            45667889996 679999999999987642            235788999999      78999999999999988654


Q ss_pred             cchhhhhhccCCcHHH-HHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHH
Q 020640          110 DNNKKLVAETPMVIPL-LMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFN  188 (323)
Q Consensus       110 ~~~~~~i~~~~g~i~~-Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~  188 (323)
                      ......+      .+. +-.+++++++.++..++.+|.++......    .....++.+...+.+.+..++..++.++..
T Consensus        81 ~~~~~~~------~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~----~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~  150 (276)
T d1oyza_          81 KKCEDNV------FNILNNMALNDKSACVRATAIESTAQRCKKNPI----YSPKIVEQSQITAFDKSTNVRRATAFAISV  150 (276)
T ss_dssp             TTTHHHH------HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHTTCSCHHHHHHHHHHHHT
T ss_pred             cccccch------HHHHHHHHhcCCChhHHHHHHHHHHHHccccch----hhHHHHHHHHHHhcCcchHHHHHHHHHHhh
Confidence            3332222      222 33456788999999999999998754322    112356777777888888888888877765


Q ss_pred             hccCCchhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhc--------------C--HHHHHHH-------HhcCC
Q 020640          189 LCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLST--------------N--HRAVEEI-------GDLGG  243 (323)
Q Consensus       189 L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~--------------~--~~~~~~i-------~~~g~  243 (323)
                      ...          ...++.+..++.+.  ..+..+..++..+..              +  ...+...       ....+
T Consensus       151 ~~~----------~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~  220 (276)
T d1oyza_         151 IND----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKDKRV  220 (276)
T ss_dssp             C-------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCGGG
T ss_pred             cch----------HHHHHHHHHhcccccchhhhhHHHHHHhhhccccccchhhhhhhhhhhhhhhhhhccccchhhhhhh
Confidence            422          12334444444332  122222222222211              1  1111111       12236


Q ss_pred             HHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcC-CHHHHHHHHHHHH
Q 020640          244 VSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDG-TARAKRKATGILE  311 (323)
Q Consensus       244 i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~~A~~~L~  311 (323)
                      ++.|++.+++   +.++..++.+|..+..            ...++.|.+++..+ +.+++..|...|+
T Consensus       221 ~~~L~~~l~d---~~vr~~a~~aL~~ig~------------~~~~~~L~~~l~~~~d~~vr~~A~~~L~  274 (276)
T d1oyza_         221 LSVLCDELKK---NTVYDDIIEAAGELGD------------KTLLPVLDTMLYKFDDNEIITSAIDKLK  274 (276)
T ss_dssp             HHHHHHHHTS---SSCCHHHHHHHHHHCC------------GGGHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred             HHHHHHHhCC---hHHHHHHHHHHHHcCC------------HHHHHHHHHHHccCCCHHHHHHHHHHHc
Confidence            8888888873   4578888888887642            34778888888765 7889988877663

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=5.7e-06  Score=73.58  Aligned_cols=272  Identities=11%  Similarity=0.109  Sum_probs=168.9

Q ss_pred             hHHHHHHHHhc---CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhc
Q 020640           31 DHFLSLLKKMS---ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLS  107 (323)
Q Consensus        31 ~~i~~Lv~~l~---~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls  107 (323)
                      +.++.++..+.   .+...+..++.++..++.........-.. ...++.++..+...    +.+.+++..++.++..+.
T Consensus       127 ~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~-~~il~~~~~~l~~~----~~~~~v~~~a~~~l~~~~  201 (458)
T d1ibrb_         127 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKE----EPSNNVKLAATNALLNSL  201 (458)
T ss_dssp             THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTT----CCCHHHHHHHHHHHHHHT
T ss_pred             chhHHHHHHHHhhcchHHHHHHHHHHHHHHHhhccchhhhhhH-HHHHHHHHHHhccc----ccCHHHHHHHHHHHHHHH
Confidence            57888888884   22455667788887776433322111111 23567777777643    456789999999998876


Q ss_pred             cccch---hhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCC-chhhhhccCChHHHHHHhhhcCHhHHHHHH
Q 020640          108 IHDNN---KKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDS-NKEVIGKSGALKPLIDLLDEGHQSAMKDVA  183 (323)
Q Consensus       108 ~~~~~---~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~-~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al  183 (323)
                      .....   ......  ...+.+...+.+++++++..++.++..+..... .-.........+.+.....+.++.++..++
T Consensus       202 ~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~  279 (458)
T d1ibrb_         202 EFTKANFDKESERH--FIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGI  279 (458)
T ss_dssp             TTTHHHHTSHHHHH--HHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHH
T ss_pred             HhhhhhhhhHHHHH--HhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence            54321   111111  245667777788899999999999999864321 111112222334445556677888899999


Q ss_pred             HHHHHhccCCchh---------------------HHHHhhCchHHHHHHhhcC---------chHHHHHHHHHHHhcC-H
Q 020640          184 SAIFNLCITHENK---------------------ARAVRDGGVSVILKKIMDG---------VHVDELLAILAMLSTN-H  232 (323)
Q Consensus       184 ~aL~~L~~~~~~~---------------------~~i~~~g~v~~Lv~ll~~~---------~~~~~a~~~L~~l~~~-~  232 (323)
                      ..+..++......                     .........+.+...+.+.         .++..+..++..++.. +
T Consensus       280 ~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~  359 (458)
T d1ibrb_         280 EFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE  359 (458)
T ss_dssp             HHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhcc
Confidence            8888875422100                     0001112334444444321         3577777777777762 2


Q ss_pred             -HHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHhcccC-hHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHH
Q 020640          233 -RAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSD-RTKWKAMREEESTHGTISKLAQDGTARAKRKATGIL  310 (323)
Q Consensus       233 -~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L  310 (323)
                       +.-.     ..++.+...++++ +.+.++.|+.+|..++... +...+..+  ...++.|+..+++.++.++..|+++|
T Consensus       360 ~~~~~-----~l~~~i~~~l~s~-~~~~r~aal~~l~~i~~~~~~~~~~~~l--~~i~~~l~~~l~d~~~~VR~~a~~~l  431 (458)
T d1ibrb_         360 DDIVP-----HVLPFIKEHIKNP-DWRYRDAAVMAFGCILEGPEPSQLKPLV--IQAMPTLIELMKDPSVVVRDTAAWTV  431 (458)
T ss_dssp             TTHHH-----HHHHHHHHHTTCS-SHHHHHHHHHHHHHTSSSSCTTTTCTTT--TTHHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred             Hhhhh-----HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhcCHhHHHHHH--HHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence             2211     1345566666654 3788999999999998643 22223333  46899999999999999999999999


Q ss_pred             HHHhcch
Q 020640          311 ERLKRTV  317 (323)
Q Consensus       311 ~~l~~~~  317 (323)
                      ..++++-
T Consensus       432 ~~i~~~~  438 (458)
T d1ibrb_         432 GRICELL  438 (458)
T ss_dssp             HHHHHHG
T ss_pred             HHHHHHh
Confidence            9998754

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=3e-06  Score=83.09  Aligned_cols=266  Identities=12%  Similarity=0.044  Sum_probs=156.9

Q ss_pred             HHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhcccc--ch
Q 020640           36 LLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHD--NN  112 (323)
Q Consensus        36 Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~--~~  112 (323)
                      +.+.+. .++..|..|+.++..++.+..+.-..+..  ..++.|+..|+      ++++.++..++++|..++..-  ..
T Consensus       400 l~~~l~s~~~~~reaa~~alg~i~eg~~~~~~~~l~--~li~~l~~~l~------d~~~~Vr~~a~~~l~~~~~~~~~~~  471 (888)
T d1qbkb_         400 LKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLP--ELIPHLIQCLS------DKKALVRSITCWTLSRYAHWVVSQP  471 (888)
T ss_dssp             HHHTTTSSSHHHHHHHHHHHHHHTTTSHHHHTTTHH--HHHHHHHHHTT------SSCHHHHHHHHHHHHHTHHHHHSSC
T ss_pred             HHHhhccchhHHHHHHHHHhhhhhhhHHHHhcccch--hhhHHHHHhcc------CCCHHHHHHHHHHHHHHHHHhhhhh
Confidence            333443 55788999999999888543332222222  35677777777      788999999999999886421  22


Q ss_pred             hhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCC-chhhhhccCChHHHHHHhhhcCHhHHHHHHHHHHHhcc
Q 020640          113 KKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDS-NKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCI  191 (323)
Q Consensus       113 ~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~-~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~  191 (323)
                      ......  .+++.++..+.++++.++..|+++|.++..... ...... ...++.|+..+...+...+..+..++..++.
T Consensus       472 ~~~~~~--~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~p~~-~~il~~l~~~l~~~~~~~~~~~~~al~~l~~  548 (888)
T d1qbkb_         472 PDTYLK--PLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYL-AYILDTLVFAFSKYQHKNLLILYDAIGTLAD  548 (888)
T ss_dssp             HHHHTT--THHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSGGGH-HHHHHHHHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred             hhhhhh--hhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhHH-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence            233333  378888888899999999999999999974221 111111 2356666666666555555555555555432


Q ss_pred             CC---chhHHHHhhCchHHHHHH------------------------hhcC-----------------------------
Q 020640          192 TH---ENKARAVRDGGVSVILKK------------------------IMDG-----------------------------  215 (323)
Q Consensus       192 ~~---~~~~~i~~~g~v~~Lv~l------------------------l~~~-----------------------------  215 (323)
                      .-   -.+....+. .++.++..                        +...                             
T Consensus       549 ~~~~~~~~~~~~~~-l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~  627 (888)
T d1qbkb_         549 SVGHHLNKPEYIQM-LMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQ  627 (888)
T ss_dssp             HHGGGGCSHHHHHH-HHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             hhhccccchHHHHH-HHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            11   001111000 11111110                        0000                             


Q ss_pred             ---------chHHHHHHHHHHHhc--CHHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhh
Q 020640          216 ---------VHVDELLAILAMLST--NHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREE  284 (323)
Q Consensus       216 ---------~~~~~a~~~L~~l~~--~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~  284 (323)
                               .....++.++..+..  .+.....+.....++.+...+++.+ +.+++.|..++..++...+......+. 
T Consensus       628 ~~~~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~~-~~vr~~a~~llgdl~~~~~~~~~~~l~-  705 (888)
T d1qbkb_         628 PDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKM-PEVRQSSFALLGDLTKACFQHVKPCIA-  705 (888)
T ss_dssp             TTTSCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCSS-HHHHHHHHHHHHHHHHHCGGGTGGGHH-
T ss_pred             cccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCCC-hHHHHHHHHHHHHHHHhhhHHHHHHHH-
Confidence                     112223333333332  1122222223345666667777544 889999999999998876554444442 


Q ss_pred             cccHHHHHHHhhcCCHHHHHHHHHHHHHHhcc
Q 020640          285 ESTHGTISKLAQDGTARAKRKATGILERLKRT  316 (323)
Q Consensus       285 ~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~  316 (323)
                       .+++.|.+-+.++...++.+|++++..++..
T Consensus       706 -~~~~~l~~~L~~~~~~v~~~a~~~ig~ia~~  736 (888)
T d1qbkb_         706 -DFMPILGTNLNPEFISVCNNATWAIGEISIQ  736 (888)
T ss_dssp             -HHHHHHHHTCCGGGHHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHhCcCCHHHHHHHHHHHHHHHHH
Confidence             5778888888888889999999999877643

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=98.44  E-value=2.3e-05  Score=64.96  Aligned_cols=205  Identities=7%  Similarity=0.014  Sum_probs=125.3

Q ss_pred             cCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC
Q 020640           72 HDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSAL  151 (323)
Q Consensus        72 ~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~  151 (323)
                      ....+.|+++|+      ++++.++..|+.+|..+..           ...++.++.+++++++.++..|+.+|..+...
T Consensus        18 ~~~~~~L~~~L~------d~~~~vR~~A~~~L~~~~~-----------~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~   80 (276)
T d1oyza_          18 KLNDDELFRLLD------DHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKIC   80 (276)
T ss_dssp             TSCHHHHHHHTT------CSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCC
T ss_pred             cCCHHHHHHHhc------CCCHHHHHHHHHHHHhhCC-----------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhccc
Confidence            456788999999      8899999999999987742           12578999999999999999999999998654


Q ss_pred             CCchhhhhccCChHHHHH-HhhhcCHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHH
Q 020640          152 DSNKEVIGKSGALKPLID-LLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAML  228 (323)
Q Consensus       152 ~~~~~~i~~~g~i~~Lv~-lL~~~~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l  228 (323)
                      ......     .++.|.. +++++++.++..++.+|.+++........    ..++.+...+.+.  .++..++.++..+
T Consensus        81 ~~~~~~-----~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~----~~~~~l~~~~~d~~~~vr~~a~~~l~~~  151 (276)
T d1oyza_          81 KKCEDN-----VFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSP----KIVEQSQITAFDKSTNVRRATAFAISVI  151 (276)
T ss_dssp             TTTHHH-----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHH----HHHHHHHHHTTCSCHHHHHHHHHHHHTC
T ss_pred             cccccc-----hHHHHHHHHhcCCChhHHHHHHHHHHHHccccchhhH----HHHHHHHHHhcCcchHHHHHHHHHHhhc
Confidence            433222     3445555 45667899999999999998765533222    2445566666655  3455555544433


Q ss_pred             hcCHHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHH---------------------HHhhccc
Q 020640          229 STNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKA---------------------MREEEST  287 (323)
Q Consensus       229 ~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~---------------------~~~~~~~  287 (323)
                      ..          ...++.+..++.... ...+..+..++.............                     .+.....
T Consensus       152 ~~----------~~~~~~l~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~  220 (276)
T d1oyza_         152 ND----------KATIPLLINLLKDPN-GDVRNWAAFAININKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKDKRV  220 (276)
T ss_dssp             -------------CCHHHHHHHHTCSS-HHHHHHHHHHHHHHTCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCGGG
T ss_pred             ch----------HHHHHHHHHhccccc-chhhhhHHHHHHhhhccccccchhhhhhhhhhhhhhhhhhccccchhhhhhh
Confidence            21          122333333333221 333333333333322222110000                     0012346


Q ss_pred             HHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 020640          288 HGTISKLAQDGTARAKRKATGILERLKR  315 (323)
Q Consensus       288 i~~L~~ll~~~~~~~~~~A~~~L~~l~~  315 (323)
                      ++.|++.+.++  .++..|.++|..+..
T Consensus       221 ~~~L~~~l~d~--~vr~~a~~aL~~ig~  246 (276)
T d1oyza_         221 LSVLCDELKKN--TVYDDIIEAAGELGD  246 (276)
T ss_dssp             HHHHHHHHTSS--SCCHHHHHHHHHHCC
T ss_pred             HHHHHHHhCCh--HHHHHHHHHHHHcCC
Confidence            77788877743  477888888887763

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.41  E-value=1.9e-05  Score=70.58  Aligned_cols=225  Identities=10%  Similarity=0.059  Sum_probs=157.7

Q ss_pred             CCCHHHHHHHHHHHHHhccccchhhhhhcc-CCcHHHHHHHHhc-----------------CCHHHHHHHHHHHHHhcCC
Q 020640           90 GINPNLQEDVITTLLNLSIHDNNKKLVAET-PMVIPLLMDALRS-----------------GTIETRSNAAAALFTLSAL  151 (323)
Q Consensus        90 ~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~-~g~i~~Lv~ll~~-----------------~~~~~~~~a~~~L~~L~~~  151 (323)
                      +.+...+..++..+..+...++.|..+... +..++.++.+|+.                 .....+..++-++|-|+..
T Consensus       176 ~~~~~~~~i~v~~lq~llr~~~~R~~fw~~~~~~~~~l~~il~~a~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~  255 (477)
T d1ho8a_         176 IEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFN  255 (477)
T ss_dssp             TTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTS
T ss_pred             ccccchHHHHHHHHHHHhcCccHHHHHHHcccchHHHHHHHHHHHhcccccchhhcccCCCccHHHHHHHHHHHHHHHcC
Confidence            567788888999999998888889887642 2245666666643                 1357788999999999998


Q ss_pred             CCchhhhhcc--CChHHHHHHhhh-cCHhHHHHHHHHHHHhccCCc--h----hHHHHhhCchHHHHHHhhcC-----ch
Q 020640          152 DSNKEVIGKS--GALKPLIDLLDE-GHQSAMKDVASAIFNLCITHE--N----KARAVRDGGVSVILKKIMDG-----VH  217 (323)
Q Consensus       152 ~~~~~~i~~~--g~i~~Lv~lL~~-~~~~~~~~al~aL~~L~~~~~--~----~~~i~~~g~v~~Lv~ll~~~-----~~  217 (323)
                      ++....+.+.  +.++.|+++++. ..+.+.+-++.+|.|++....  +    ...++..+++ +++..|..+     ++
T Consensus       256 ~~~~~~l~~~~~~~i~~l~~i~~~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~v~~~~l-~~l~~L~~r~~~Dedl  334 (477)
T d1ho8a_         256 PVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNAL-PTVQSLSERKYSDEEL  334 (477)
T ss_dssp             HHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHH-HHHHHHHSSCCSSHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHcchh-HHHHHHhcCCCCCHHH
Confidence            7777777664  458999999876 478899999999999987542  2    2223444444 555666543     12


Q ss_pred             HHH-------HHHHHHHHhc---------------CHHHH-HHHHhc--------C--CHHHHHHHHhc---------cC
Q 020640          218 VDE-------LLAILAMLST---------------NHRAV-EEIGDL--------G--GVSCMLRIIRE---------ST  255 (323)
Q Consensus       218 ~~~-------a~~~L~~l~~---------------~~~~~-~~i~~~--------g--~i~~Lv~ll~~---------~~  255 (323)
                      .+.       --..+..+++               .|.++ +.|+.+        +  .+..|+++|+.         ++
T Consensus       335 ~edl~~L~~~L~~~~k~lTsfd~Y~~Ev~Sg~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~~~~~~~~~~s~  414 (477)
T d1ho8a_         335 RQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQ  414 (477)
T ss_dssp             HHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHH
T ss_pred             HHHHHHHHHHHHHHHHhcCcHHHHHHHHhcCCCCCCCCcCChhHHHHHHHhhcccchHHHHHHHHHHhhcccccccccCC
Confidence            111       1111112221               13333 334432        1  58999999962         22


Q ss_pred             ChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhcc
Q 020640          256 CDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRT  316 (323)
Q Consensus       256 ~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~  316 (323)
                      ++.+..-||.=+..++.+.|. -+.++++-|+-..+++++.+.+++++..|..++..+..+
T Consensus       415 D~~~lAVAc~DiGefvr~~P~-gr~il~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~~  474 (477)
T d1ho8a_         415 EKIIIQVALNDITHVVELLPE-SIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIGY  474 (477)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTT-HHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHHH
T ss_pred             CcceeehhhhhHHHHHHHCcc-hhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence            255666788889999999986 567778889999999999999999999999999988754

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=1.2e-06  Score=88.29  Aligned_cols=268  Identities=12%  Similarity=0.069  Sum_probs=170.8

Q ss_pred             HHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhH-HHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccc
Q 020640           32 HFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFR-ALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIH  109 (323)
Q Consensus        32 ~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~-~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~  109 (323)
                      .+..|++.+. .|++.|..|+..|.+.-..+.-.- ....  ...++.|+..|.      +.++++|..|+.+|..+...
T Consensus         4 ~~~~ll~k~~~~D~d~R~ma~~dl~~~l~~~~~~~~~~~~--~~i~~~ll~~L~------D~~~~Vq~~A~k~l~~l~~~   75 (1207)
T d1u6gc_           4 HISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSE--RKVVKMILKLLE------DKNGEVQNLAVKCLGPLVSK   75 (1207)
T ss_dssp             HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHH--HHHHHHHHHHTT------CSSHHHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHhcCCCCHhHHHHHHHHHHHHHhhcccccChHHH--HHHHHHHHHHhC------CCCHHHHHHHHHHHHHHHHh
Confidence            5778888885 779999999988888764321100 0111  235778899988      88999999999999988654


Q ss_pred             cchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC--CCchh----hhhccCChHHHHHHhhh-cCHhHHHHH
Q 020640          110 DNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSAL--DSNKE----VIGKSGALKPLIDLLDE-GHQSAMKDV  182 (323)
Q Consensus       110 ~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~--~~~~~----~i~~~g~i~~Lv~lL~~-~~~~~~~~a  182 (323)
                      -..  ....  .+++.|+..+.+++...+..+..+|..+...  .....    .......++.+...+.. .+..++..+
T Consensus        76 ~~~--~~~~--~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~a  151 (1207)
T d1u6gc_          76 VKE--YQVE--TIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEA  151 (1207)
T ss_dssp             SCH--HHHH--HHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHH
T ss_pred             CcH--hhHH--HHHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHH
Confidence            322  1222  2567777777777777788777777766321  11111    11111233333443333 467788889


Q ss_pred             HHHHHHhccCCchhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcC-HHHHHHHHhcCCHHHHHHHHhccCChhH
Q 020640          183 ASAIFNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTN-HRAVEEIGDLGGVSCMLRIIRESTCDRN  259 (323)
Q Consensus       183 l~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~  259 (323)
                      +.+|..+......-..-.....++.++..+.+.  .+++.|+.+|..++.. ++.   . -...++.+++.+..+.+...
T Consensus       152 l~~l~~l~~~~g~~l~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~---~-~~~~~~~ll~~l~~~~~~~~  227 (1207)
T d1u6gc_         152 LDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI---V-FVDLIEHLLSELSKNDSMST  227 (1207)
T ss_dssp             HHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCS
T ss_pred             HHHHHHHHHHhhHhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCHH---H-HHHHHHHHHHHHccCCCHHH
Confidence            999888755332110000112445566666665  6789999999999874 221   1 12357777777765444666


Q ss_pred             HHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhcch
Q 020640          260 KENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTV  317 (323)
Q Consensus       260 ~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~  317 (323)
                      +..++.++..++...+......+  ...++.+.+.+.++++++++.+..++..+....
T Consensus       228 ~~~~~~~l~~l~~~~~~~~~~~l--~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~~  283 (1207)
T d1u6gc_         228 TRTYIQCIAAISRQAGHRIGEYL--EKIIPLVVKFCNVDDDELREYCIQAFESFVRRC  283 (1207)
T ss_dssp             CTTHHHHHHHHHHHSSGGGTTSC--TTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHHcchhhHHHH--HHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhC
Confidence            77788888888876654333322  478999999999999999999999999887643

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.19  E-value=1.9e-05  Score=77.21  Aligned_cols=271  Identities=12%  Similarity=0.041  Sum_probs=150.4

Q ss_pred             hhHHHHHHHHhc-CCchhHHHHHHHHHHHhccCh-hhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhc
Q 020640           30 RDHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMP-SFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLS  107 (323)
Q Consensus        30 ~~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls  107 (323)
                      ...++.++..++ .++.+|..++++|.+++.... .....+..  ..++.++..+.      ++++.++..|+.+|.++.
T Consensus       435 ~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~~--~~l~~ll~~l~------d~~~~V~~~a~~al~~l~  506 (888)
T d1qbkb_         435 PELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLK--PLMTELLKRIL------DSNKRVQEAACSAFATLE  506 (888)
T ss_dssp             HHHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSCHHHHTT--THHHHHHHHHS------SSCHHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhh--hhHHHHHHHhc------CCCHHHHHHHHHHHHHHH
Confidence            346677777775 568889999999998874221 11222333  57788888887      778999999999999886


Q ss_pred             cccc-hhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcC---CCCchhhhhccCChHHHHHHhh-----------
Q 020640          108 IHDN-NKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSA---LDSNKEVIGKSGALKPLIDLLD-----------  172 (323)
Q Consensus       108 ~~~~-~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~---~~~~~~~i~~~g~i~~Lv~lL~-----------  172 (323)
                      .... .-.....  .+++.++..+..........+..++..++.   ..-.+..+.+ ..++.+.....           
T Consensus       507 ~~~~~~l~p~~~--~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~-~l~~~l~~~~~~~~~~~~~~~~  583 (888)
T d1qbkb_         507 EEACTELVPYLA--YILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQ-MLMPPLIQKWNMLKDEDKDLFP  583 (888)
T ss_dssp             HHHTTSSGGGHH--HHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHGGGGCSHHHHH-HHHHHHHHHHTTSCTTCTTHHH
T ss_pred             HHhhhhhhhHHH--HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhccccchHHHH-HHHHHHHHHHHhcccchHHHHH
Confidence            4322 1111121  245556666666655555555555555431   1100110000 01111111100           


Q ss_pred             -------------h------------------------------------cCHhHHHHHHHHHHHhccCC-chhHHHH-h
Q 020640          173 -------------E------------------------------------GHQSAMKDVASAIFNLCITH-ENKARAV-R  201 (323)
Q Consensus       173 -------------~------------------------------------~~~~~~~~al~aL~~L~~~~-~~~~~i~-~  201 (323)
                                   .                                    .+......++.++..+...- ..-..++ .
T Consensus       584 ~le~l~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~  663 (888)
T d1qbkb_         584 LLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVAR  663 (888)
T ss_dssp             HHHHHHHHHHHSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHT
T ss_pred             HHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhH
Confidence                         0                                    01222333333333332211 1111111 1


Q ss_pred             hCchHHHHHHhhcC--chHHHHHHHHHHHhcC-HH-HHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHhcccChHh
Q 020640          202 DGGVSVILKKIMDG--VHVDELLAILAMLSTN-HR-AVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTK  277 (323)
Q Consensus       202 ~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~-~~-~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~  277 (323)
                      ...++.+...+++.  .++..+..++..++.. +. .+..+-  ..++.+..-+.+. ...++.+|++++..++....+.
T Consensus       664 ~~l~~~l~~~l~~~~~~vr~~a~~llgdl~~~~~~~~~~~l~--~~~~~l~~~L~~~-~~~v~~~a~~~ig~ia~~~~~~  740 (888)
T d1qbkb_         664 SNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIA--DFMPILGTNLNPE-FISVCNNATWAIGEISIQMGIE  740 (888)
T ss_dssp             SCHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHH--HHHHHHHHTCCGG-GHHHHHHHHHHHHHHHHHTGGG
T ss_pred             hhHHHHHHHHhCCCChHHHHHHHHHHHHHHHhhhHHHHHHHH--HHHHHHHHHhCcC-CHHHHHHHHHHHHHHHHHHHHH
Confidence            23444555555554  5677788777777652 22 111111  1345555555543 3678999999999998876555


Q ss_pred             HHHHHhhcccHHHHHHHhhcC--CHHHHHHHHHHHHHHhcc
Q 020640          278 WKAMREEESTHGTISKLAQDG--TARAKRKATGILERLKRT  316 (323)
Q Consensus       278 ~~~~~~~~~~i~~L~~ll~~~--~~~~~~~A~~~L~~l~~~  316 (323)
                      .+..+  ..+++.|+.+++++  ...++++++.+|..|...
T Consensus       741 ~~py~--~~il~~L~~il~~~~~~~~v~~n~~~~lgrl~~~  779 (888)
T d1qbkb_         741 MQPYI--PMVLHQLVEIINRPNTPKTLLENTAITIGRLGYV  779 (888)
T ss_dssp             GGGGS--HHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             hhhhH--HHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHH
Confidence            55544  36889999999875  567899999999888753

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.00  E-value=0.00016  Score=69.05  Aligned_cols=266  Identities=11%  Similarity=0.006  Sum_probs=165.4

Q ss_pred             hHHHHHHHHh-cCCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccc
Q 020640           31 DHFLSLLKKM-SATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIH  109 (323)
Q Consensus        31 ~~i~~Lv~~l-~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~  109 (323)
                      ...+.|...+ +.|+.+|..|-..|..+...+.         .+.+..|.+.+...    +.+..++..|+-.|.|.-..
T Consensus         5 ~~~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~~---------~~~~~~l~~il~~~----~~~~~~r~~A~i~lkn~i~~   71 (861)
T d2bpta1           5 EFAQLLENSILSPDQNIRLTSETQLKKLSNDNF---------LQFAGLSSQVLIDE----NTKLEGRILAALTLKNELVS   71 (861)
T ss_dssp             HHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHCH---------HHHHHHHHHHHTCT----TSCHHHHHHHHHHHHTTTCC
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCc---------hHHHHHHHHHHHcC----CCCHHHHHHHHHHHHHHhhc
Confidence            3445555544 6789999999999998875443         34566788888743    45678888888888876433


Q ss_pred             cch-hh-----hhh---c---cCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC--CchhhhhccCChHHHHHHhhhc-
Q 020640          110 DNN-KK-----LVA---E---TPMVIPLLMDALRSGTIETRSNAAAALFTLSALD--SNKEVIGKSGALKPLIDLLDEG-  174 (323)
Q Consensus       110 ~~~-~~-----~i~---~---~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~--~~~~~i~~~g~i~~Lv~lL~~~-  174 (323)
                      ... ..     ...   .   ...+...++..+.++++.++..++.++..++..+  ++..    ...++.|++.+.++ 
T Consensus        72 ~~~~~~~~~~~~~~~~i~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~i~~~~~p~~~w----peli~~L~~~~~s~~  147 (861)
T d2bpta1          72 KDSVKTQQFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAW----PELMKIMVDNTGAEQ  147 (861)
T ss_dssp             SSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCC----HHHHHHHHHHTSTTS
T ss_pred             ccchhhhhHHhhhHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCcCch----HHHHHHHHHHhcCCC
Confidence            221 10     000   0   0012345667778889999999999999987432  1111    23567777777664 


Q ss_pred             CHhHHHHHHHHHHHhccCCchhHHHHhh---CchHHHHHHhhcC----chHHHHHHHHHHHhcC-HHHHH-HHHhcCCHH
Q 020640          175 HQSAMKDVASAIFNLCITHENKARAVRD---GGVSVILKKIMDG----VHVDELLAILAMLSTN-HRAVE-EIGDLGGVS  245 (323)
Q Consensus       175 ~~~~~~~al~aL~~L~~~~~~~~~i~~~---g~v~~Lv~ll~~~----~~~~~a~~~L~~l~~~-~~~~~-~i~~~g~i~  245 (323)
                      +...+..++.+|..++...+....-...   ..+..++..+.+.    .++..++.++.++... +..-. .......++
T Consensus       148 ~~~~~~~al~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~  227 (861)
T d2bpta1         148 PENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQ  227 (861)
T ss_dssp             CHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHH
Confidence            4567888999999987654322111111   1233334433322    5678888888887764 22211 112223466


Q ss_pred             HHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHH-HHHhhcCCHHHHHHHHHHHHHHhcc
Q 020640          246 CMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTI-SKLAQDGTARAKRKATGILERLKRT  316 (323)
Q Consensus       246 ~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L-~~ll~~~~~~~~~~A~~~L~~l~~~  316 (323)
                      .+...+++.+ +.++..++.++..++...+......+.  ..+..+ .....+.++.++..+...+..++..
T Consensus       228 ~l~~~~~~~~-~~~~~~~~~~l~~i~~~~~~~~~~~l~--~~l~~l~~~~~~~~~~~v~~~~~~~l~~l~~~  296 (861)
T d2bpta1         228 VVCEATQAED-IEVQAAAFGCLCKIMSKYYTFMKPYME--QALYALTIATMKSPNDKVASMTVEFWSTICEE  296 (861)
T ss_dssp             HHHHHHTCSC-HHHHHHHHHHHHHHHHHHGGGCHHHHH--HTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHhcCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhcCccHHHHHHHHHHHHHHHHH
Confidence            7778887554 889999999999998866554333332  233333 3445666899999998888877653

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=0.0012  Score=63.03  Aligned_cols=272  Identities=11%  Similarity=0.123  Sum_probs=163.5

Q ss_pred             hHHHHHHHHhc-CC--chhHHHHHHHHHHHhccChhhHHHHhh-hcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHh
Q 020640           31 DHFLSLLKKMS-AT--LPDQTEAAKELRLLTKRMPSFRALFGE-SHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNL  106 (323)
Q Consensus        31 ~~i~~Lv~~l~-~~--~~~~~~a~~~L~~l~~~~~~~~~~i~~-~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~l  106 (323)
                      +.++.|++.+. .+  ...+..++.+|..++..-..  ..+.. ....++.++..+...    +.+.+++..++.++.+.
T Consensus       128 eli~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~--~~~~~~~~~il~~i~~~l~~~----~~~~~v~~~a~~~l~~~  201 (876)
T d1qgra_         128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDP--EQLQDKSNEILTAIIQGMRKE----EPSNNVKLAATNALLNS  201 (876)
T ss_dssp             THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCH--HHHGGGHHHHHHHHHHHHSTT----CSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCH--HHHHHHHHHHHHHHHHHHcCc----CccHHHHHHHHHHHHHH
Confidence            57888888884 22  45677789999988753221  11111 123577778877643    45678999999988776


Q ss_pred             ccccch---hhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-CCchhhhhccCChHHHHHHhhhcCHhHHHHH
Q 020640          107 SIHDNN---KKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSAL-DSNKEVIGKSGALKPLIDLLDEGHQSAMKDV  182 (323)
Q Consensus       107 s~~~~~---~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a  182 (323)
                      ......   ......  -+++.+...+.+++++++..++.++..+... .+.-.........+.+...+.+....+...+
T Consensus       202 ~~~~~~~~~~~~~~~--~i~~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  279 (876)
T d1qgra_         202 LEFTKANFDKESERH--FIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQG  279 (876)
T ss_dssp             GGGCHHHHTSHHHHH--HHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHH
T ss_pred             HHHhhhhhhHHHHHH--HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence            433221   111111  1455666777888999999999999998642 2222222223345556666777788888888


Q ss_pred             HHHHHHhccCCchh---------------------HHHHhhCchHHHHHHhhcC---------chHHHHHHHHHHHhcCH
Q 020640          183 ASAIFNLCITHENK---------------------ARAVRDGGVSVILKKIMDG---------VHVDELLAILAMLSTNH  232 (323)
Q Consensus       183 l~aL~~L~~~~~~~---------------------~~i~~~g~v~~Lv~ll~~~---------~~~~~a~~~L~~l~~~~  232 (323)
                      +..+..++......                     ........++.+...+...         .++..+..++..++...
T Consensus       280 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~  359 (876)
T d1qgra_         280 IEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCC  359 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccccchHHHHHHHHHHHHHHHh
Confidence            87777665422100                     0000111233333333311         35666666666666531


Q ss_pred             HHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHhcccC-hHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHH
Q 020640          233 RAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSD-RTKWKAMREEESTHGTISKLAQDGTARAKRKATGILE  311 (323)
Q Consensus       233 ~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~  311 (323)
                      ..  .++. -.++.+...+.+. +...++.++..+..+.... .......+  ...++.+...+.++++.++..|.+++.
T Consensus       360 ~~--~~~~-~~~~~i~~~l~~~-~~~~r~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~l~~~l~d~~~~vr~~a~~~l~  433 (876)
T d1qgra_         360 ED--DIVP-HVLPFIKEHIKNP-DWRYRDAAVMAFGCILEGPEPSQLKPLV--IQAMPTLIELMKDPSVVVRDTAAWTVG  433 (876)
T ss_dssp             GG--GGHH-HHHHHHHHHTTCS-SHHHHHHHHHHHHHTSSSSCHHHHHHHH--HHHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred             hh--hhhh-hhHHHHHHhhccc-hHHHHHHHHHHHHhhhhhhhHHHHHHHH--HHHHHHHHHhhcCCccHHHHHHHHHHH
Confidence            11  0110 1133344444433 3778888888888887643 23333443  468889999999999999999999999


Q ss_pred             HHhcc
Q 020640          312 RLKRT  316 (323)
Q Consensus       312 ~l~~~  316 (323)
                      .++++
T Consensus       434 ~~~~~  438 (876)
T d1qgra_         434 RICEL  438 (876)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99864

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=0.00031  Score=61.79  Aligned_cols=250  Identities=8%  Similarity=0.067  Sum_probs=147.8

Q ss_pred             hHHHHHHHHhc-C--CchhHHHHHHHHHHHhccChhhHH-HHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHh
Q 020640           31 DHFLSLLKKMS-A--TLPDQTEAAKELRLLTKRMPSFRA-LFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNL  106 (323)
Q Consensus        31 ~~i~~Lv~~l~-~--~~~~~~~a~~~L~~l~~~~~~~~~-~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~l  106 (323)
                      ..++.++..+. +  +..++..|+.++..+......... .... ....+.+...+.      +++++++..++.+|..+
T Consensus       171 ~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~------~~~~~~~~~~~~~l~~i  243 (458)
T d1ibrb_         171 EILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESER-HFIMQVVCEATQ------CPDTRVRVAALQNLVKI  243 (458)
T ss_dssp             HHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHH-HHHHHHHHHHTT------CSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhhhHHHH-HHhHhhHHHHhc------CCCHHHHHHHHHHHHHH
Confidence            45666777774 2  356788899999888864433211 1111 234455566666      77899999999999888


Q ss_pred             ccccch-hhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCC-----------------chhhh----hccCCh
Q 020640          107 SIHDNN-KKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDS-----------------NKEVI----GKSGAL  164 (323)
Q Consensus       107 s~~~~~-~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~-----------------~~~~i----~~~g~i  164 (323)
                      ...... -..... ....+.+.....+.+++++..++..+..++....                 .....    .....+
T Consensus       244 ~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  322 (458)
T d1ibrb_         244 MSLYYQYMETYMG-PALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLV  322 (458)
T ss_dssp             HHHCGGGCTTTTT-TTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHH-HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHh
Confidence            643321 111112 2234445566677888999999988887753110                 00000    011223


Q ss_pred             HHHHHHhhh-------cCHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhcCH--H
Q 020640          165 KPLIDLLDE-------GHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNH--R  233 (323)
Q Consensus       165 ~~Lv~lL~~-------~~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~~--~  233 (323)
                      +.+.+.+..       ++..++..+..++..++......  +.. ..++.+...++++  ..++.++.+|..++...  +
T Consensus       323 ~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~--~~~-~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~  399 (458)
T d1ibrb_         323 PILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD--IVP-HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPS  399 (458)
T ss_dssp             HHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTT--HHH-HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTT
T ss_pred             hhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccHh--hhh-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHh
Confidence            334444332       13357788888888876543321  111 1445566667666  56888999999998642  2


Q ss_pred             HHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhc
Q 020640          234 AVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQD  297 (323)
Q Consensus       234 ~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~  297 (323)
                      .-..+ -..+++.++..+++++ +.++..|+++|..++..-++.   . .....+++++..+-.
T Consensus       400 ~~~~~-l~~i~~~l~~~l~d~~-~~VR~~a~~~l~~i~~~~~~~---~-~~~~~l~~ll~~ll~  457 (458)
T d1ibrb_         400 QLKPL-VIQAMPTLIELMKDPS-VVVRDTAAWTVGRICELLPEA---A-INDVYLAPLLQCLIE  457 (458)
T ss_dssp             TTCTT-TTTHHHHHHHGGGCSC-HHHHHHHHHHHHHHHHHGGGG---C-CSTTTHHHHHHHHHC
T ss_pred             HHHHH-HHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHhhcc---c-chhhHHHHHHHHHhC
Confidence            21111 1256899999999765 999999999999998654321   1 123456666665543

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.78  E-value=3e-05  Score=55.58  Aligned_cols=88  Identities=19%  Similarity=0.137  Sum_probs=74.0

Q ss_pred             CCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC
Q 020640           73 DAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALD  152 (323)
Q Consensus        73 g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~  152 (323)
                      ..++.|+..|.      ++++.++..|+.+|.++..           .+.++.|+.+|+++++.++..++.+|..+.   
T Consensus        22 ~~~~~L~~~l~------d~~~~vR~~a~~~L~~~~~-----------~~~~~~L~~~l~d~~~~VR~~a~~aL~~i~---   81 (111)
T d1te4a_          22 EAFEPLLESLS------NEDWRIRGAAAWIIGNFQD-----------ERAVEPLIKLLEDDSGFVRSGAARSLEQIG---   81 (111)
T ss_dssp             TTHHHHHHGGG------CSCHHHHHHHHHHHGGGCS-----------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHc------CCCHHHHHHHHHHHHhcch-----------hhhHHHHHhhhccchhHHHHHHHHHHHHhC---
Confidence            46888999998      7899999999999987642           235788999999999999999999998773   


Q ss_pred             CchhhhhccCChHHHHHHhhhcCHhHHHHHHHHHH
Q 020640          153 SNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIF  187 (323)
Q Consensus       153 ~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~  187 (323)
                             ..+.++.|.++++++++.++..|+.+|.
T Consensus        82 -------~~~~~~~L~~ll~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          82 -------GERVRAAMEKLAETGTGFARKVAVNYLE  109 (111)
T ss_dssp             -------SHHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             -------ccchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence                   2347889999999999999999998873

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.77  E-value=0.0027  Score=56.33  Aligned_cols=228  Identities=12%  Similarity=0.080  Sum_probs=148.6

Q ss_pred             CCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccccchhhhhh----ccCC-cHHHHHHHHhcCCHHHHHHHHHHHHH
Q 020640           73 DAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVA----ETPM-VIPLLMDALRSGTIETRSNAAAALFT  147 (323)
Q Consensus        73 g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~----~~~g-~i~~Lv~ll~~~~~~~~~~a~~~L~~  147 (323)
                      .++..++++|..     ...+++..+.+..+..|-.++..+..+.    +.+. ..+.+..++..++.-....++.++..
T Consensus        74 ~~~~~~l~lL~~-----~sk~d~vqyvL~Li~dLL~~d~~~~~~~~~~~~~~~~~~~~f~~~l~~~d~~~~~~s~~i~~l  148 (477)
T d1ho8a_          74 KTLIPLIHLLST-----SDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSL  148 (477)
T ss_dssp             TTHHHHHHHHHS-----CCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhh-----cCcHHHHHHHHHHHHHHHhcCcchhHHHHHHhhCccchhHHHHHhccCchhHHHHHHHHHHHH
Confidence            368889999985     4567888888888877655544332222    2221 12233444444555666677777888


Q ss_pred             hcCCCCchhhhhc--cCChHHHHHHhhhcCHhHHHHHHHHHHHhccCCchhHHHHh--hCchHHHHHHhhc---------
Q 020640          148 LSALDSNKEVIGK--SGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVR--DGGVSVILKKIMD---------  214 (323)
Q Consensus       148 L~~~~~~~~~i~~--~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~i~~--~g~v~~Lv~ll~~---------  214 (323)
                      ++..........+  ......+-.+...++.....-++.+|..|...++-|..+..  ...++.|++.|+.         
T Consensus       149 l~~~~~~~~~~~e~l~~~~~~l~~l~~~~~~~~~~i~v~~lq~llr~~~~R~~fw~~~~~~~~~l~~il~~a~~~~~~~~  228 (477)
T d1ho8a_         149 LVQNGLHNVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATR  228 (477)
T ss_dssp             HTSTTTCCHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC------
T ss_pred             HHhccccccchHHHHHHhhHHHHHhhcccccchHHHHHHHHHHHhcCccHHHHHHHcccchHHHHHHHHHHHhcccccch
Confidence            8765443333222  11222222333446777788889999999998888888754  3567777777753         


Q ss_pred             -------C---chHHHHHHHHHHHhcCHHHHHHHHhcC--CHHHHHHHHhccCChhHHHHHHHHHHHhcccCh----HhH
Q 020640          215 -------G---VHVDELLAILAMLSTNHRAVEEIGDLG--GVSCMLRIIRESTCDRNKENCIAILHTICLSDR----TKW  278 (323)
Q Consensus       215 -------~---~~~~~a~~~L~~l~~~~~~~~~i~~~g--~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~----~~~  278 (323)
                             +   .+...++-+++-|+..++....+.+.+  .++.|+++++.+..+++.+-++.+|.|++....    ...
T Consensus       229 ~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~l~~~~~~~i~~l~~i~~~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~  308 (477)
T d1ho8a_         229 IVATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVI  308 (477)
T ss_dssp             -------CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHH
T ss_pred             hhcccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhhhhhHH
Confidence                   1   346788999999999999999998864  599999999876668899999999999987532    122


Q ss_pred             HHHHhhcccHHHHHHHhhcC--CHHHHHH
Q 020640          279 KAMREEESTHGTISKLAQDG--TARAKRK  305 (323)
Q Consensus       279 ~~~~~~~~~i~~L~~ll~~~--~~~~~~~  305 (323)
                      ...+...++.+.+..+....  ++++.+-
T Consensus       309 ~~~~v~~~~l~~l~~L~~r~~~Dedl~ed  337 (477)
T d1ho8a_         309 KQLLLLGNALPTVQSLSERKYSDEELRQD  337 (477)
T ss_dssp             HHHHHHHCHHHHHHHHHSSCCSSHHHHHH
T ss_pred             HHHHHHcchhHHHHHHhcCCCCCHHHHHH
Confidence            33344556666555554443  5665544

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.68  E-value=6.7e-06  Score=59.22  Aligned_cols=104  Identities=19%  Similarity=0.197  Sum_probs=79.9

Q ss_pred             CCCHHHHHHHHHHHHHhccccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhccCChHHHHH
Q 020640           90 GINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLID  169 (323)
Q Consensus        90 ~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~  169 (323)
                      ++|+.++..|+.+|..+.           .. .++.|+..+.++++.++..++++|.++..          .+.++.|++
T Consensus         3 D~~~~VR~~A~~aL~~~~-----------~~-~~~~L~~~l~d~~~~vR~~a~~~L~~~~~----------~~~~~~L~~   60 (111)
T d1te4a_           3 DENKWVRRDVSTALSRMG-----------DE-AFEPLLESLSNEDWRIRGAAAWIIGNFQD----------ERAVEPLIK   60 (111)
T ss_dssp             SSCCCSSSSCCSSTTSCS-----------ST-THHHHHHGGGCSCHHHHHHHHHHHGGGCS----------HHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHHhC-----------HH-HHHHHHHHHcCCCHHHHHHHHHHHHhcch----------hhhHHHHHh
Confidence            566777777777665442           12 47889999999999999999999876532          346899999


Q ss_pred             HhhhcCHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcC--chHHHHHHHH
Q 020640          170 LLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAIL  225 (323)
Q Consensus       170 lL~~~~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L  225 (323)
                      +|.++++.++..++.+|..+..          .+.++.|..+++++  .++..|+.+|
T Consensus        61 ~l~d~~~~VR~~a~~aL~~i~~----------~~~~~~L~~ll~d~~~~vr~~A~~aL  108 (111)
T d1te4a_          61 LLEDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYL  108 (111)
T ss_dssp             HHHHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHG
T ss_pred             hhccchhHHHHHHHHHHHHhCc----------cchHHHHHHHHcCCCHHHHHHHHHHH
Confidence            9999999999999999988631          24577788888876  5677777665

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.61  E-value=0.0044  Score=58.64  Aligned_cols=269  Identities=12%  Similarity=0.095  Sum_probs=155.2

Q ss_pred             hHHHHHHHHhc-C-CchhHHHHHHHHHHHhccChhhHHHHhh-hcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhc
Q 020640           31 DHFLSLLKKMS-A-TLPDQTEAAKELRLLTKRMPSFRALFGE-SHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLS  107 (323)
Q Consensus        31 ~~i~~Lv~~l~-~-~~~~~~~a~~~L~~l~~~~~~~~~~i~~-~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls  107 (323)
                      +.++.|++.+. + +...+..|+.+|..++.........+.. ....+..++..+...    +.+..++..++.++.++.
T Consensus       134 eli~~L~~~~~s~~~~~~~~~al~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~----~~~~~v~~~a~~~l~~~~  209 (861)
T d2bpta1         134 ELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQST----ETSKAVRLAALNALADSL  209 (861)
T ss_dssp             HHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTT----CCCHHHHHHHHHHHHHHG
T ss_pred             HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcc----cCCHHHHHHHHHHHHHHH
Confidence            35667777774 2 3456777888888887543321111111 011233333333322    556889999999998875


Q ss_pred             cccc-h--hhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-CCchhhhhccCChHHH-HHHhhhcCHhHHHHH
Q 020640          108 IHDN-N--KKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSAL-DSNKEVIGKSGALKPL-IDLLDEGHQSAMKDV  182 (323)
Q Consensus       108 ~~~~-~--~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~g~i~~L-v~lL~~~~~~~~~~a  182 (323)
                      ..-. +  ......  .+++.+...+++++++++..++.++..+... .+.-..... ..+..+ .....+.++.++..+
T Consensus       210 ~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~-~~l~~l~~~~~~~~~~~v~~~~  286 (861)
T d2bpta1         210 IFIKNNMEREGERN--YLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYME-QALYALTIATMKSPNDKVASMT  286 (861)
T ss_dssp             GGCHHHHTSHHHHH--HHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHH-HTHHHHHHHHTTCSSHHHHHHH
T ss_pred             HHHhHhHHhhhhhh--HHHHhHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCccHHHHHHH
Confidence            4322 1  111112  2466777888899999999999999998642 111111111 123333 334455688899999


Q ss_pred             HHHHHHhccCCchhHH-HHh----------------hCchHHHHHHhhcC---------chHHHHHHHHHHHhcCHHHHH
Q 020640          183 ASAIFNLCITHENKAR-AVR----------------DGGVSVILKKIMDG---------VHVDELLAILAMLSTNHRAVE  236 (323)
Q Consensus       183 l~aL~~L~~~~~~~~~-i~~----------------~g~v~~Lv~ll~~~---------~~~~~a~~~L~~l~~~~~~~~  236 (323)
                      +..+..++........ ...                ...++.+...+...         ..+..+..++..++..-.   
T Consensus       287 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---  363 (861)
T d2bpta1         287 VEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCG---  363 (861)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHG---
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhcc---
Confidence            9888877653321111 000                01344445554421         245555555555554211   


Q ss_pred             HHHhcCCHHHHH----HHHhccCChhHHHHHHHHHHHhcccChH-hHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHH
Q 020640          237 EIGDLGGVSCML----RIIRESTCDRNKENCIAILHTICLSDRT-KWKAMREEESTHGTISKLAQDGTARAKRKATGILE  311 (323)
Q Consensus       237 ~i~~~g~i~~Lv----~ll~~~~~~~~~~~a~~~L~~L~~~~~~-~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~  311 (323)
                          ...++.+.    ..+. +.+...++.++.++..+...... .....+  ...++.+++.+.+.++.++..|.+++.
T Consensus       364 ----~~~~~~~~~~~~~~~~-~~~~~~~~~a~~~l~~i~~~~~~~~~~~~l--~~~l~~l~~~l~d~~~~vr~~a~~~l~  436 (861)
T d2bpta1         364 ----NHILEPVLEFVEQNIT-ADNWRNREAAVMAFGSIMDGPDKVQRTYYV--HQALPSILNLMNDQSLQVKETTAWCIG  436 (861)
T ss_dssp             ----GGGHHHHHHHHHHHTT-CSSHHHHHHHHHHHHHTSSSSCHHHHHHHH--HHHHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred             ----hhhhhhhcchhhhhhh-hHHHHHHHHHHHHHHHHHhhcchhhHHHHH--HHHHHHHHHHhcCcchhhhhHHHHHHH
Confidence                11233333    3333 33477888999999998875532 223333  357889999999999999999999999


Q ss_pred             HHhcc
Q 020640          312 RLKRT  316 (323)
Q Consensus       312 ~l~~~  316 (323)
                      .++..
T Consensus       437 ~l~~~  441 (861)
T d2bpta1         437 RIADS  441 (861)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88764

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.44  E-value=0.00096  Score=66.60  Aligned_cols=273  Identities=12%  Similarity=0.149  Sum_probs=163.9

Q ss_pred             hHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccc
Q 020640           31 DHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIH  109 (323)
Q Consensus        31 ~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~  109 (323)
                      ..++.+.+.+. .+..++..+...+..+....+..-.....  ..++.+...+...    .....++..++..+..+...
T Consensus       431 ~i~~~l~~~l~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l~--~~~~~i~~~l~~~----~~~~~~~~~al~~l~~l~~~  504 (1207)
T d1u6gc_         431 NIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIP--VLVPGIIFSLNDK----SSSSNLKIDALSCLYVILCN  504 (1207)
T ss_dssp             HHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHH--HHHHHHHHHTTCS----SSCHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHhcCCchhHHHHHHHHHHHHHHHcchHHHHhhH--hhHHHHHHHHhcc----cchhHHHHHHHHHHHHHHHh
Confidence            34555666664 55778888888888887644422111111  2355566666532    34567788888888877544


Q ss_pred             cch--hhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC--CC---chhhhhc--cCChHHHHHHhhh--cCHhH
Q 020640          110 DNN--KKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSAL--DS---NKEVIGK--SGALKPLIDLLDE--GHQSA  178 (323)
Q Consensus       110 ~~~--~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~--~~---~~~~i~~--~g~i~~Lv~lL~~--~~~~~  178 (323)
                      ...  -....  ....+.+...+.+....+...+..++..+...  +.   .......  ...++.++..+..  .+.++
T Consensus       505 ~~~~~~~~~~--~~l~~~~~~~~~~~~~~i~~~al~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~e~  582 (1207)
T d1u6gc_         505 HSPQVFHPHV--QALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEV  582 (1207)
T ss_dssp             SCGGGGHHHH--TTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHH
T ss_pred             ccHHHHHHHH--HhhhhhHHHHHccccHHHHHHHHHHHHHHHHHhhhhccchhhhhHHHHHHHHHHHHHHHHhcccchHH
Confidence            332  22222  23678888888888888888888887776421  10   0000000  1133444444443  36778


Q ss_pred             HHHHHHHHHHhccCCchh-HHHHhhCchHHHHHHhhcCchHHHHHHHHHHHhcCH---HHHHHHHhcCCHHHHHHHHhcc
Q 020640          179 MKDVASAIFNLCITHENK-ARAVRDGGVSVILKKIMDGVHVDELLAILAMLSTNH---RAVEEIGDLGGVSCMLRIIRES  254 (323)
Q Consensus       179 ~~~al~aL~~L~~~~~~~-~~i~~~g~v~~Lv~ll~~~~~~~~a~~~L~~l~~~~---~~~~~i~~~g~i~~Lv~ll~~~  254 (323)
                      +..++.++..+....... .... ...++.+...+.++..+..++..+..++...   +....+.  ..++.+...++..
T Consensus       583 ~~~al~~l~~l~~~~~~~~~~~~-~~~l~~l~~~l~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~--~~~~~l~~~l~~~  659 (1207)
T d1u6gc_         583 KERAISCMGQIICNLGDNLGSDL-PNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLG--EGVPILASFLRKN  659 (1207)
T ss_dssp             HHHHHHHHHHHHHHTGGGCCTHH-HHHHHHHHHHTTSSSHHHHHHHHHHHHTTCSSCCCCHHHHH--HHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHHHhhhhhHHHH-HHHHHHHHHHhcchhhHHHHHHHHHHHHHhccchhHHHHHH--HHHHHHHHhcccc
Confidence            888988888775432211 1111 1245666777777777888888888887642   2222222  3467778888754


Q ss_pred             CChhHHHHHHHHHHHhcccChHhH-HHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhcch
Q 020640          255 TCDRNKENCIAILHTICLSDRTKW-KAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTV  317 (323)
Q Consensus       255 ~~~~~~~~a~~~L~~L~~~~~~~~-~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~  317 (323)
                      + ..++..++.+|..+........ ...+  ...++.+..++.+.+..++..+..+|..+.+..
T Consensus       660 ~-~~~r~~al~~L~~l~~~~~~~~~~~~~--~~~l~~l~~ll~~~d~~v~~~~l~~l~~l~~~~  720 (1207)
T d1u6gc_         660 Q-RALKLGTLSALDILIKNYSDSLTAAMI--DAVLDELPPLISESDMHVSQMAISFLTTLAKVY  720 (1207)
T ss_dssp             C-HHHHHHHHHHHHHHHHHCCTTCCHHHH--HHHHTTCGGGSCTTCHHHHHHHHHHHHHHTTSC
T ss_pred             h-HHHHHHHHHHHHHHHHhccccchhHHH--hhHHHhhccccccccHHHHHHHHHHHHHHHhhc
Confidence            4 8889999999988876543211 1221  234455556677778899999999999887643

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.42  E-value=0.0013  Score=62.87  Aligned_cols=264  Identities=10%  Similarity=0.005  Sum_probs=162.4

Q ss_pred             HHHHHHHhcCCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhcc-ccc
Q 020640           33 FLSLLKKMSATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSI-HDN  111 (323)
Q Consensus        33 i~~Lv~~l~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~-~~~  111 (323)
                      ++.|-..++.|...|..|-..|..+...++         .|.+..|.+.+...    +.+..++..|+-.|.|.-. ...
T Consensus         4 ~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~~---------~~f~~~L~~i~~~~----~~~~~iR~~A~i~lKn~i~~~~~   70 (876)
T d1qgra_           4 ITILEKTVSPDRLELEAAQKFLERAAVENL---------PTFLVELSRVLANP----GNSQVARVAAGLQIKNSLTSKDP   70 (876)
T ss_dssp             HHHHHGGGCSCHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHCT----TSCHHHHHHHHHHHHHHHCCSSH
T ss_pred             HHHHHHHhCcCHHHHHHHHHHHHHHHhcCh---------hHHHHHHHHHHhcC----CCCHHHHHHHHHHHHHHhhcccc
Confidence            344444456778899999999998886432         45677788888643    4467889999988987543 221


Q ss_pred             hh-hhh----h-----ccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhc-cCChHHHHHHhhhc--CHhH
Q 020640          112 NK-KLV----A-----ETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGK-SGALKPLIDLLDEG--HQSA  178 (323)
Q Consensus       112 ~~-~~i----~-----~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~-~g~i~~Lv~lL~~~--~~~~  178 (323)
                      .. ...    .     ....+...++..+.+++. .+..++.++..++..+-.   -.+ .+.++.|++.+.++  +..+
T Consensus        71 ~~~~~~~~~~~~i~~~~k~~ik~~ll~~l~~~~~-~~~~~a~~i~~i~~~~~p---~~~Wpeli~~L~~~l~~~~~~~~~  146 (876)
T d1qgra_          71 DIKAQYQQRWLAIDANARREVKNYVLHTLGTETY-RPSSASQCVAGIACAEIP---VNQWPELIPQLVANVTNPNSTEHM  146 (876)
T ss_dssp             HHHHHHHHHHHTSCHHHHHHHHHHHHHHTTTCCS-SSCHHHHHHHHHHHHHGG---GTCCTTHHHHHHHHHHCTTCCHHH
T ss_pred             chhhhhhcccccCCHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHCC---ccccHHHHHHHHHHhcCCCCcHHH
Confidence            11 100    0     011123456667766553 444567777777643210   011 46789999988764  4567


Q ss_pred             HHHHHHHHHHhccCCchhHHH-HhhCchHHHHHHhhcC----chHHHHHHHHHHHhcC-HHHHH-HHHhcCCHHHHHHHH
Q 020640          179 MKDVASAIFNLCITHENKARA-VRDGGVSVILKKIMDG----VHVDELLAILAMLSTN-HRAVE-EIGDLGGVSCMLRII  251 (323)
Q Consensus       179 ~~~al~aL~~L~~~~~~~~~i-~~~g~v~~Lv~ll~~~----~~~~~a~~~L~~l~~~-~~~~~-~i~~~g~i~~Lv~ll  251 (323)
                      +..++.+|..++..-...... .....++.++..+.+.    .++..++.++.+.... +..-. .....-.++.+...+
T Consensus       147 ~~~~l~~l~~i~~~~~~~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~  226 (876)
T d1qgra_         147 KESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEAT  226 (876)
T ss_dssp             HHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHh
Confidence            888999999887533211111 1114667777777644    4677777777776653 21110 111112355566666


Q ss_pred             hccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 020640          252 RESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKR  315 (323)
Q Consensus       252 ~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~  315 (323)
                      ... +.+++..++.++..++...+......+. ......+.....+..+.+...+...+..++.
T Consensus       227 ~~~-~~~v~~~~~~~l~~l~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~  288 (876)
T d1qgra_         227 QCP-DTRVRVAALQNLVKIMSLYYQYMETYMG-PALFAITIEAMKSDIDEVALQGIEFWSNVCD  288 (876)
T ss_dssp             TCS-SHHHHHHHHHHHHHHHHHSGGGCHHHHT-TTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             cCC-CHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence            644 4889999999999999877664444332 3455666667777888888888887777664

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.20  E-value=0.16  Score=42.12  Aligned_cols=211  Identities=10%  Similarity=0.092  Sum_probs=147.1

Q ss_pred             hHHHHHHHHhc-CCchhHHHHHHHHHHHhccChhhHHH----HhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHH
Q 020640           31 DHFLSLLKKMS-ATLPDQTEAAKELRLLTKRMPSFRAL----FGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLN  105 (323)
Q Consensus        31 ~~i~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~----i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~  105 (323)
                      +.+..|+..|. =+-+.|..+.....++-+.....+..    +......+..|+..        -+++++--.+-..|+.
T Consensus        69 d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~g--------ye~~eiAl~~G~mLRE  140 (330)
T d1upka_          69 GLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKG--------YESPEIALNCGIMLRE  140 (330)
T ss_dssp             SHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHG--------GGSTTTHHHHHHHHHH
T ss_pred             ChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhh--------cCCcchhhhhhHHHHH
Confidence            44555555553 45677888998888888776665532    33312223333322        3367777777788888


Q ss_pred             hccccchhhhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhc-CCCCchhhhhc---cCChHHHHHHhhhcCHhHHHH
Q 020640          106 LSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLS-ALDSNKEVIGK---SGALKPLIDLLDEGHQSAMKD  181 (323)
Q Consensus       106 ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~-~~~~~~~~i~~---~g~i~~Lv~lL~~~~~~~~~~  181 (323)
                      +..++.-.+.+..++ .+..+....+.++-++...|..++..|- .+.........   .......-++|.+++=-++..
T Consensus       141 cik~e~lak~iL~s~-~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrRq  219 (330)
T d1upka_         141 CIRHEPLAKIILWSE-QFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQ  219 (330)
T ss_dssp             HHTSHHHHHHHHHSG-GGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHH
T ss_pred             HHhhHHHHHHHHccH-HHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCCchHHHHH
Confidence            888888667777766 4667889999999999999999999985 45443333333   335566778898999899999


Q ss_pred             HHHHHHHhccCCchhHHHHh----hCchHHHHHHhhcC--chHHHHHHHHHHHhcC----HHHHHHHHhcCCHHHHHHHH
Q 020640          182 VASAIFNLCITHENKARAVR----DGGVSVILKKIMDG--VHVDELLAILAMLSTN----HRAVEEIGDLGGVSCMLRII  251 (323)
Q Consensus       182 al~aL~~L~~~~~~~~~i~~----~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~~----~~~~~~i~~~g~i~~Lv~ll  251 (323)
                      ++..|..+-.+..|...+..    ..-+..++.+|++.  .++-.|..++.-...+    ++....+..+.  ..|+.++
T Consensus       220 SlKLLgelLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFVANpnKp~~I~~IL~~Nr--~kLl~fl  297 (330)
T d1upka_         220 SLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQ--AKLIEFL  297 (330)
T ss_dssp             HHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTH--HHHHHHH
T ss_pred             HHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhhhcCCCCCHHHHHHHHHhH--HHHHHHH
Confidence            99999999988887776543    25677888899876  6888898888877775    35666666553  4444444


Q ss_pred             h
Q 020640          252 R  252 (323)
Q Consensus       252 ~  252 (323)
                      .
T Consensus       298 ~  298 (330)
T d1upka_         298 S  298 (330)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.11  E-value=0.29  Score=40.53  Aligned_cols=194  Identities=10%  Similarity=0.041  Sum_probs=144.1

Q ss_pred             CcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC-Cch----hhhhccCChHHHHHHhhh-cCHhHHHHHHHHHHHhccCCc
Q 020640          121 MVIPLLMDALRSGTIETRSNAAAALFTLSALD-SNK----EVIGKSGALKPLIDLLDE-GHQSAMKDVASAIFNLCITHE  194 (323)
Q Consensus       121 g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~-~~~----~~i~~~g~i~~Lv~lL~~-~~~~~~~~al~aL~~L~~~~~  194 (323)
                      +++..|+..|..=+-+.++.++.+..++-... +.+    ..+.. . .+.|..++.. +++++-..+-..|+....+..
T Consensus        69 d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~-~-~eil~~L~~gye~~eiAl~~G~mLREcik~e~  146 (330)
T d1upka_          69 GLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT-Q-QNILFMLLKGYESPEIALNCGIMLRECIRHEP  146 (330)
T ss_dssp             SHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT-C-THHHHHHHHGGGSTTTHHHHHHHHHHHHTSHH
T ss_pred             ChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHc-C-HHHHHHHHhhcCCcchhhhhhHHHHHHHhhHH
Confidence            36888888888889999999999999997543 223    22332 1 2333333333 467788888888999888888


Q ss_pred             hhHHHHhhCchHHHHHHhhcC--chHHHHHHHHHHHhc-CHHHHHHHHhcC---CHHHHHHHHhccCChhHHHHHHHHHH
Q 020640          195 NKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLST-NHRAVEEIGDLG---GVSCMLRIIRESTCDRNKENCIAILH  268 (323)
Q Consensus       195 ~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~l~~-~~~~~~~i~~~g---~i~~Lv~ll~~~~~~~~~~~a~~~L~  268 (323)
                      ....++....+..+.+++..+  ++...|..++..+-. ++.....+....   .+..+..++.++ +--++++++..|.
T Consensus       147 lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~-NYVtrRqSlKLLg  225 (330)
T d1upka_         147 LAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSE-NYVTKRQSLKLLG  225 (330)
T ss_dssp             HHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCS-SHHHHHHHHHHHH
T ss_pred             HHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCC-chHHHHHHHHHHH
Confidence            888888888888899988877  678888888886655 666666666554   577777888754 4778999999999


Q ss_pred             HhcccChH--hHHHHHhhcccHHHHHHHhhcCCHHHHHHHHHHHHHHhcch
Q 020640          269 TICLSDRT--KWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTV  317 (323)
Q Consensus       269 ~L~~~~~~--~~~~~~~~~~~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~  317 (323)
                      .+-.+..+  .....+.+..-+..++.++++.+..++-.|=.+.+.+...+
T Consensus       226 elLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFVANp  276 (330)
T d1upka_         226 ELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANP  276 (330)
T ss_dssp             HHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCS
T ss_pred             HHHhhhhHHHHHHHHhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhhhcCC
Confidence            99877654  12233446677888999999999999999988888776544

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=94.58  E-value=0.016  Score=46.73  Aligned_cols=33  Identities=12%  Similarity=0.081  Sum_probs=24.1

Q ss_pred             hhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHH
Q 020640           63 SFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITT  102 (323)
Q Consensus        63 ~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~  102 (323)
                      +.|..... .-.++.|..+++      ++++.++..++..
T Consensus        57 e~Ra~Aa~-~a~~~~L~~Ll~------D~d~~VR~~AA~~   89 (233)
T d1lrva_          57 ERRAIAVR-YSPVEALTPLIR------DSDEVVRRAVAYR   89 (233)
T ss_dssp             HHHHHHHT-TSCGGGGGGGTT------CSSHHHHHHHHTT
T ss_pred             HHHHHHHh-cCCHHHHHHHhc------CCCHHHHHHHHHH
Confidence            44544555 566888888888      8899999988753

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=94.01  E-value=1.4  Score=36.75  Aligned_cols=171  Identities=12%  Similarity=0.045  Sum_probs=99.7

Q ss_pred             HHHHHHhhcccccCCCCCHHHHHHHHHHHHHhcc----ccchh-hhhhccCCcHHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 020640           75 IPQLLSPLSESKCENGINPNLQEDVITTLLNLSI----HDNNK-KLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLS  149 (323)
Q Consensus        75 i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~----~~~~~-~~i~~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~  149 (323)
                      +..+.++++....  .+++.+...+.-++.++..    ..+++ ..+++.  +...+......++.+.+..++++|.|+.
T Consensus       125 l~~~~~l~~~~~~--~~~~~l~~~a~La~gslv~~~c~~~~~~~~~~~~~--l~~~l~~~~~~~~~~~~~~~LkaLGN~g  200 (336)
T d1lsha1         125 LSYARELLNTSFI--RNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQP--LHDLLSQSSDRAKEEEIVLALKALGNAG  200 (336)
T ss_dssp             HHHHHHHHTCHHH--HTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCccc--ccchhHHHHHHHHHHHHHHHHhcCCCCCcHHHHHH--HHHHHHHhhcccchHHHHHHHHHHhccC
Confidence            3445555552111  2356677777777766632    22221 222221  2333444455667777888899999985


Q ss_pred             CCCCchhhhhccCChHHHHHHhhhc-------CHhHHHHHHHHHHHhccCCchhHHHHhhCchHHHHHHhhcC----chH
Q 020640          150 ALDSNKEVIGKSGALKPLIDLLDEG-------HQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG----VHV  218 (323)
Q Consensus       150 ~~~~~~~~i~~~g~i~~Lv~lL~~~-------~~~~~~~al~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~----~~~  218 (323)
                      . +         +.++.|..++...       +..++..|+.+|++++...+..       +-+.+..++.+.    ++|
T Consensus       201 ~-p---------~~i~~l~~~l~~~~~~~~~~~~~vR~aAi~Alr~~~~~~p~~-------v~~~l~~i~~n~~e~~EvR  263 (336)
T d1lsha1         201 Q-P---------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRK-------VQEIVLPIFLNVAIKSELR  263 (336)
T ss_dssp             C-G---------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHH-------HHHHHHHHHHCTTSCHHHH
T ss_pred             C-H---------hHHHHHHHHhcccccccccccHHHHHHHHHHHHHhhhcCcHH-------HHHHHHHHHcCCCCChHHH
Confidence            3 2         3677787777542       4679999999999987654322       222455655543    455


Q ss_pred             HHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHhccCChhHHHHHHHHHHHhcccCh
Q 020640          219 DELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDR  275 (323)
Q Consensus       219 ~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~  275 (323)
                      ..|..+|..  ..|..       ..+..+...+....+..+.......|.+++..+.
T Consensus       264 iaA~~~lm~--t~P~~-------~~l~~i~~~l~~E~~~QV~sfv~S~l~~la~s~~  311 (336)
T d1lsha1         264 IRSCIVFFE--SKPSV-------ALVSMVAVRLRREPNLQVASFVYSQMRSLSRSSN  311 (336)
T ss_dssp             HHHHHHHHH--TCCCH-------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCS
T ss_pred             HHHHHHHHh--cCCCH-------HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhCCC
Confidence            555555433  23321       1256666777655557788888888888887553

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.44  E-value=2.5  Score=35.19  Aligned_cols=87  Identities=23%  Similarity=0.222  Sum_probs=66.4

Q ss_pred             hHHHHhhhcCCHHHHHHhhcccc---cC--CCCCHHHHHHHHHHHHHhccccchhhhhhccCCcHHHHHHHHhcCCHHHH
Q 020640           64 FRALFGESHDAIPQLLSPLSESK---CE--NGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETR  138 (323)
Q Consensus        64 ~~~~i~~~~g~i~~Lv~lL~~~~---~~--~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~  138 (323)
                      --..| . .+|+..|+++|..-.   ..  ...+...+..++.+|..+.........+...+.++..++..+.++++.++
T Consensus        38 Wv~~F-~-~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~tr  115 (343)
T d2bnxa1          38 WVQTF-G-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMM  115 (343)
T ss_dssp             HHHHH-H-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHH
T ss_pred             HHHHH-H-hccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHhccHHHHHHHHcChHHHHHHHHccCCCchHHH
Confidence            34556 5 678888998885311   00  02245678888999999887777777788878889999999999999999


Q ss_pred             HHHHHHHHHhcCCC
Q 020640          139 SNAAAALFTLSALD  152 (323)
Q Consensus       139 ~~a~~~L~~L~~~~  152 (323)
                      ..+..+|..++...
T Consensus       116 ~~a~elL~~lc~~~  129 (343)
T d2bnxa1         116 IDAAKLLSALCILP  129 (343)
T ss_dssp             HHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHhcc
Confidence            99999999998654

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.30  E-value=1.2  Score=37.28  Aligned_cols=141  Identities=10%  Similarity=0.164  Sum_probs=94.1

Q ss_pred             CChHHHHHHhhh-----------cCHhHHHHHHHHHHHhccCCchhHHHHhh-CchHHHHHHhhcC--chHHHHHHHHHH
Q 020640          162 GALKPLIDLLDE-----------GHQSAMKDVASAIFNLCITHENKARAVRD-GGVSVILKKIMDG--VHVDELLAILAM  227 (323)
Q Consensus       162 g~i~~Lv~lL~~-----------~~~~~~~~al~aL~~L~~~~~~~~~i~~~-g~v~~Lv~ll~~~--~~~~~a~~~L~~  227 (323)
                      +|+..|+++|..           .+......+++||..+.....+...+++. +++..++..+.+.  .++..++.+|..
T Consensus        45 ~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~tr~~a~elL~~  124 (343)
T d2bnxa1          45 EGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSA  124 (343)
T ss_dssp             HHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHhccHHHHHHHHcChHHHHHHHHccCCCchHHHHHHHHHHHH
Confidence            456666666542           12456778999999998888888888775 8889999888776  568889999999


Q ss_pred             HhcC---HHHHHHH----------HhcCCHHHHHHHHhccCChhHHHHHHHHHHHhcccChH-----hHHHHHhhcccHH
Q 020640          228 LSTN---HRAVEEI----------GDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRT-----KWKAMREEESTHG  289 (323)
Q Consensus       228 l~~~---~~~~~~i----------~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~-----~~~~~~~~~~~i~  289 (323)
                      +|..   +++-..+          .+.+-...+++.++.+.+...+..++..+-.+....++     ..+.-+...|..+
T Consensus       125 lc~~~~~~~g~~~vL~Al~~~~~~~e~~RF~~lv~~l~~~~~~ey~~a~m~lIN~li~~~~dl~~R~~lR~E~~~~Gl~~  204 (343)
T d2bnxa1         125 LCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQ  204 (343)
T ss_dssp             HHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHH
T ss_pred             HHhccCCCchHHHHHHHHHHHHHhcCCCcHHHHHHHHhccccHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHCChHH
Confidence            9863   2222222          22345788888887655567888888888888776653     1222233566666


Q ss_pred             HHHHHhhcCCHHH
Q 020640          290 TISKLAQDGTARA  302 (323)
Q Consensus       290 ~L~~ll~~~~~~~  302 (323)
                      .+-++-..+++..
T Consensus       205 il~~l~~~~~~~L  217 (343)
T d2bnxa1         205 VLQELREIENEDM  217 (343)
T ss_dssp             HHHHHTTCCCHHH
T ss_pred             HHHHHHccCChHH
Confidence            6555544445444

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=91.86  E-value=0.024  Score=45.56  Aligned_cols=59  Identities=14%  Similarity=0.027  Sum_probs=26.7

Q ss_pred             HHHHhc-CCchhHHHHHHHH-----HHHhcc-ChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHH
Q 020640           36 LLKKMS-ATLPDQTEAAKEL-----RLLTKR-MPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVIT  101 (323)
Q Consensus        36 Lv~~l~-~~~~~~~~a~~~L-----~~l~~~-~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~  101 (323)
                      |..+++ .++.+|..|+..|     ..+..+ +...|..... .-..+.|..++.      ++++.++..++.
T Consensus        71 L~~Ll~D~d~~VR~~AA~~Lp~~~L~~L~~D~d~~VR~~aa~-~l~~~~L~~Ll~------D~d~~VR~~aa~  136 (233)
T d1lrva_          71 LTPLIRDSDEVVRRAVAYRLPREQLSALMFDEDREVRITVAD-RLPLEQLEQMAA------DRDYLVRAYVVQ  136 (233)
T ss_dssp             GGGGTTCSSHHHHHHHHTTSCSGGGGGTTTCSCHHHHHHHHH-HSCTGGGGGGTT------CSSHHHHHHHHH
T ss_pred             HHHHhcCCCHHHHHHHHHHcCHHHHHHHhcCCChhHHHHHHh-ccCHHHHHHHhc------CCCHHHHHHHHh
Confidence            344444 4466666665432     222211 1122333333 223455555555      556666665554

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.34  E-value=4.4  Score=37.88  Aligned_cols=219  Identities=12%  Similarity=0.072  Sum_probs=116.7

Q ss_pred             CCCHHHHHHHHHHHHHhccccchhhhh----hccCCcHHHHHH----HHhc---CCHHHHHHHHHHHHHhcCCCCchhhh
Q 020640           90 GINPNLQEDVITTLLNLSIHDNNKKLV----AETPMVIPLLMD----ALRS---GTIETRSNAAAALFTLSALDSNKEVI  158 (323)
Q Consensus        90 ~~~~~~~~~a~~~L~~ls~~~~~~~~i----~~~~g~i~~Lv~----ll~~---~~~~~~~~a~~~L~~L~~~~~~~~~i  158 (323)
                      +.+...++.+..++..++.........    .....+.+.+..    .+..   ....++..+++++...+.... ....
T Consensus       416 ~~~~~~~e~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~~~lr~~~~~~i~~~~~~~~-~~~~  494 (959)
T d1wa5c_         416 SKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT-KAQL  494 (959)
T ss_dssp             --CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC-HHHH
T ss_pred             ccchHHHHHHHHHHHHHHhhhhhhhhhhhcccchhhHHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHHHhhcc-HHHH
Confidence            456777888888777765332211110    011112333332    3333   356788888999888875432 1111


Q ss_pred             hccCChHHHHHHhhhcCHhHHHHHHHHHHHhccCCchh---------HHHHh--hCchHHHHHHhhcC-------chHHH
Q 020640          159 GKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENK---------ARAVR--DGGVSVILKKIMDG-------VHVDE  220 (323)
Q Consensus       159 ~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~---------~~i~~--~g~v~~Lv~ll~~~-------~~~~~  220 (323)
                        ...++.++..|.+++..++..|+.++..++......         ..+..  ...+..++..+...       ...+.
T Consensus       495 --~~~~~~l~~~L~~~~~~V~~~a~~al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~~l~~~~~~~~~~~~~~~  572 (959)
T d1wa5c_         495 --IELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEF  572 (959)
T ss_dssp             --HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHH
T ss_pred             --HHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhhcccccchhhccHHHHHhhHHHHHHHHHHHHHhhcchhhhHHHHHH
Confidence              347889999999999999999999999997643211         11100  02334455555432       11234


Q ss_pred             HHHHHHHHhcC--HHHHHHHHhcCCHHHHHHHHh----ccCChhHHHHHHHHHHHhcccC-hHhHHHHHhhcccHHHHHH
Q 020640          221 LLAILAMLSTN--HRAVEEIGDLGGVSCMLRIIR----ESTCDRNKENCIAILHTICLSD-RTKWKAMREEESTHGTISK  293 (323)
Q Consensus       221 a~~~L~~l~~~--~~~~~~i~~~g~i~~Lv~ll~----~~~~~~~~~~a~~~L~~L~~~~-~~~~~~~~~~~~~i~~L~~  293 (323)
                      .+.++..+...  +......  ...++.|+..+.    ++.++........++..+.... ++....+  ....++.+..
T Consensus       573 ll~~l~~ii~~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~l--~~~l~p~i~~  648 (959)
T d1wa5c_         573 LMRSIFRVLQTSEDSIQPLF--PQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLL--VDSMMPTFLT  648 (959)
T ss_dssp             HHHHHHHHHHHHTTTTGGGH--HHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHH--HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhcCchhHHHH--HHHHHHHHHH
Confidence            55555555431  1111111  012344444443    2223555666666676665432 3333343  3467788888


Q ss_pred             HhhcCCHHHHHHHHHHHHHHhc
Q 020640          294 LAQDGTARAKRKATGILERLKR  315 (323)
Q Consensus       294 ll~~~~~~~~~~A~~~L~~l~~  315 (323)
                      .+..........+..++..+..
T Consensus       649 ~~~~~~~~~~~~~~~l~~~~~~  670 (959)
T d1wa5c_         649 VFSEDIQEFIPYVFQIIAFVVE  670 (959)
T ss_dssp             HHHTTCTTTHHHHHHHHHHHHH
T ss_pred             HHhccchhHHHHHHHHHHHHHH
Confidence            8877766666666666666654

>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: Hrs
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=83.24  E-value=2.4  Score=30.46  Aligned_cols=72  Identities=6%  Similarity=0.073  Sum_probs=58.3

Q ss_pred             CHHHHHHHHhccCChhHHHHHHHHHHHhcccChHhHHHHHhhcccHHHHHHHhhcC-CHHHHHHHHHHHHHHhc
Q 020640          243 GVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDG-TARAKRKATGILERLKR  315 (323)
Q Consensus       243 ~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~~A~~~L~~l~~  315 (323)
                      ++..|.+-+++++ +.++..|+.+|-.+..+........+...+++..|..++.+. ...++++...++.....
T Consensus        43 a~ral~krl~~~n-~~v~l~aL~LLd~~vkNcG~~f~~~i~s~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~  115 (145)
T d1dvpa1          43 AFAAIKKKMNSPN-PHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAY  115 (145)
T ss_dssp             HHHHHHHHHTCSS-HHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCC-HHHHHHHHHHHHHHHHccchHHHHHHhhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence            3566777777554 999999999999998886555666666778999999998776 78899999999988775

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.31  E-value=3.1  Score=38.97  Aligned_cols=140  Identities=12%  Similarity=0.096  Sum_probs=92.6

Q ss_pred             HHHHHHHhc--CCchhHHHHHHHHHHHhccChhhHHHHhhhcCCHHHHHHhhcccccCCCCCHHHHHHHHHHHHHhccc-
Q 020640           33 FLSLLKKMS--ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIH-  109 (323)
Q Consensus        33 i~~Lv~~l~--~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~a~~~L~~ls~~-  109 (323)
                      ++.+...|.  -+++.+..|-..|..+.. +          .|....|++++...    +.+..+|..|+-.|.|.-.. 
T Consensus         4 ~~~l~~ll~~s~~~~~~k~Ae~~L~~~~~-~----------p~f~~~L~~i~~~~----~~~~~iR~~A~i~lKn~i~~~   68 (959)
T d1wa5c_           4 LETVAKFLAESVIASTAKTSERNLRQLET-Q----------DGFGLTLLHVIAST----NLPLSTRLAGALFFKNFIKRK   68 (959)
T ss_dssp             HHHHHHHHHHTTSGGGHHHHHHHHHHHHT-S----------TTHHHHHHHHHHCT----TSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCChHHHHHHHHHHHHHHc-C----------CCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHHHHHh
Confidence            455666663  457788889888888763 3          46677788887643    34677888888888765321 


Q ss_pred             c--chh-hhhhc--cCCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchhhhhc-cCChHHHHHHhhhcCHhHHHHHH
Q 020640          110 D--NNK-KLVAE--TPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGK-SGALKPLIDLLDEGHQSAMKDVA  183 (323)
Q Consensus       110 ~--~~~-~~i~~--~~g~i~~Lv~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~al  183 (323)
                      .  ... ..+-+  +..+-..++..+.+++..++...+.++..++..+-.    .+ .+.++.|++.+.+++......++
T Consensus        69 W~~~~~~~~i~~e~k~~Ik~~ll~~l~~~~~~ir~~l~~~i~~I~~~d~p----~~Wp~ll~~l~~~l~s~~~~~~~~~L  144 (959)
T d1wa5c_          69 WVDENGNHLLPANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFP----DRWPTLLSDLASRLSNDDMVTNKGVL  144 (959)
T ss_dssp             SBCSSSCBSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHST----TTCTTHHHHHHTTCCSSCTTHHHHHH
T ss_pred             cccccccCCCCHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCc----cccHHHHHHHHHHhCCCCHHHHHHHH
Confidence            1  000 00100  111223456666778888999999999988753211    12 46788888888888888888889


Q ss_pred             HHHHHhcc
Q 020640          184 SAIFNLCI  191 (323)
Q Consensus       184 ~aL~~L~~  191 (323)
                      .+|..++.
T Consensus       145 ~~l~~i~k  152 (959)
T d1wa5c_         145 TVAHSIFK  152 (959)
T ss_dssp             HHHHHHHG
T ss_pred             HHHHHHHH
Confidence            99988874