Citrus Sinensis ID: 020660

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320---
MTSTRIVFSNGVVSQASDTPSVSTFLQERRGAYTTTRTHNNGSCLLFWERHLRRLASSARILYNSSPNLLFKSPTPSGLEPIRTPSSSSSLSMWESMIKSLVNDSMNEALPIALKERRDGEELAVTVLVSGDYGKLSGIENMGSDDFLGVFDVSVHFSGYVPFVFGVEGTGARLALVGRGRDVAEAKYSDWVRLRKPLEKLRPPSVTELLLSNDGDQLLEGSITNFFVVCRKDNSEAEDKFLQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITSKYSSSFDLIAQKRFAYLLQMI
cccccEEEEccccccccccccccEEEEcccccEEEEEEEEcccEEEcHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccHHHHHcccccccEEEEEEEEccccccccccccccccccccEEEEEEEEccccccccccccccEEEEEccccccccHHHHHHHHHHHHHHHHccccccEEEEEEccccEEEccEEEEEEEEEcccccccHHHHcccccccccEEEcccccccccccHHHHHHHHHHHHccccEEEEcccHHHHccccEEEEEcccccEEEEEcHHHHHHHHHcc
ccccEEEEEccEEccccccccHHHHHHcccccEEEEEccccccEEEcHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHcHHHHHHHHHHHHHccccccEEEEEEEEccccccccccccccccccccEEEEEEEccccccccccccccEEEEEEcccccccHccccHHHHHHHHHHHHcccccEEEEEEccccEEEEEEEEEEEEEEEEcccccccccccccccccccEEEEcccccccccHHHHHHHHHHHHHccccEEEccccHHHHHHHHHHHHHcccEHHHHHHHHHHHHHHHHHc
mtstrivfsngvvsqasdtpsvSTFLQErrgaytttrthnngsclLFWERHLRRLASSARILynsspnllfksptpsglepirtpssssslSMWESMIKSLVNDSMNEALPIAlkerrdgeELAVTVLVSgdygklsgienmgsddflgvFDVSvhfsgyvpfvfgvegtGARLALVGRGRDVAEAKYSDWVrlrkpleklrppsvtelllsndgdqllegsITNFFVVCRKDNSEAEDKFLQTcnnshsfevqtapisdgvlpGVIRQLVIEVCRskgipirelaSSWSQHELWKEAFItskysssfDLIAQKRFAYLLQMI
mtstrivfsngvvsqasdtpsvstFLQERrgaytttrthnngscLLFWERHLRRLASSARILYNSSPNLLFKSPTPSGLEPIRTPSSSSSLSMWESMIKSLVNDSMNEALPIAlkerrdgeeLAVTVLVSGDYGKLSGIENMGSDDFLGVFDVSVHFSGYVPFVFGVEGTGARLALVgrgrdvaeakysdwvrlrkpleklrppsvTELLLSNDGDQLLEGSITNFFVVCRKDNSEAEDKFLQTCNNSHSFEVQtapisdgvlpGVIRQLVIEVCRSKGIPIRElasswsqhELWKEAFItskysssfdLIAQKRFAYLLQMI
MTSTRIVFSNGVVSQASDTPSVSTFLQERRGAYTTTRTHNNGSCLLFWERHLRRLASSARILYNSSPNLLFKSPTPSGLEPIRTPssssslsmwesmiksLVNDSMNEALPIALKERRDGEELAVTVLVSGDYGKLSGIENMGSDDFLGVFDVSVHFSGYVPFVFGVEGTGARLALVGRGRDVAEAKYSDWVRLRKPLEKLRPPSVTELLLSNDGDQLLEGSITNFFVVCRKDNSEAEDKFLQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITSKYSSSFDLIAQKRFAYLLQMI
*****************************RGAYTTTRTHNNGSCLLFWERHLRRLASSARILYNS**********************************************IAL*****GEELAVTVLVSGDYGKLSGIENMGSDDFLGVFDVSVHFSGYVPFVFGVEGTGARLALVGRGRDVAEAKYSDWVRLRKPLEKLRPPSVTELLLSNDGDQLLEGSITNFFVVCRKDNSEAEDKFLQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITSKYSSSFDLIAQKRFAYLL***
**STRIVFSNGVVSQASDTPSVSTFLQERRGAYTTTRTHNNGSCLLFWERHLRRLASSARILYNSSPNLLFKSPTPSGLEPIRTPSSSSSLSMWESMIKSLVNDSMNEALPIALKERRDGEELAVTVLVSGDYGKLSGIENMGSDDFLGVFDVSVHFSGYVPFVFGVEGTGARLALVGRGRDVAEAKYSDWVRLRKPLEKLRPPSVTELLLSNDGDQLLEGSITNFFVVCRKDNSEAEDKFLQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITSKYSSSFDLIAQKRFAYLLQMI
MTSTRIVFSNGVVSQASDTPSVSTFLQERRGAYTTTRTHNNGSCLLFWERHLRRLASSARILYNSSPNLLFKSPT*****************MWESMIKSLVNDSMNEALPIALKERRDGEELAVTVLVSGDYGKLSGIENMGSDDFLGVFDVSVHFSGYVPFVFGVEGTGARLALVGRGRDVAEAKYSDWVRLRKPLEKLRPPSVTELLLSNDGDQLLEGSITNFFVVCRKDNSEAEDKFLQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITSKYSSSFDLIAQKRFAYLLQMI
*TSTRIVFSNGVVSQASDTPSVSTFLQERRGAYTTTRTHNNGSCLLFWERHLRRLASSARILYNSSPNLLFKSPTPS*****RTPSSSSSLSMWESMIKSLVNDSMNEALPIALKERRDGEELAVTVLVSGDYGKLSGIENMGSDDFLGVFDVSVHFSGYVPFVFGVEGTGARLALVGRGRDVAEAKYSDWVRLRKPLEKLRPPSVTELLLSNDGDQLLEGSITNFFVVCRKDNSEAEDKFLQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITSKYSSSFDLIAQKRFAYLLQMI
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MTSTRIVFSNGVVSQASDTPSVSTFLQERRGAYTTTRTHNNGSCLLFWERHLRRLASSARILYNSSPNLLFKSPTPSGLEPIRTPSSSSSLSMWESMIKSLVNDSMNEALPIALKERRDGEELAVTVLVSGDYGKLSGIENMGSDDFLGVFDVSVHFSGYVPFVFGVEGTGARLALVGRGRDVAEAKYSDWVRLRKPLEKLRPPSVTELLLSNDGDQLLEGSITNFFVVCRKDNSEAEDKFLQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITSKYSSSFDLIAQKRFAYLLQMI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query323
296086080360 unnamed protein product [Vitis vinifera] 0.900 0.808 0.643 1e-105
225449178357 PREDICTED: uncharacterized protein LOC10 0.891 0.806 0.633 1e-102
356574408364 PREDICTED: uncharacterized protein LOC10 0.919 0.815 0.582 3e-97
255565848364 conserved hypothetical protein [Ricinus 0.904 0.802 0.582 1e-96
449451713365 PREDICTED: uncharacterized protein LOC10 0.925 0.819 0.567 3e-84
224109664333 predicted protein [Populus trichocarpa] 0.811 0.786 0.564 5e-83
297820252359 hypothetical protein ARALYDRAFT_324027 [ 0.869 0.782 0.568 1e-81
449525028294 PREDICTED: uncharacterized LOC101222891, 0.907 0.996 0.556 4e-79
21553997353 unknown [Arabidopsis thaliana] 0.879 0.804 0.565 2e-78
18410169353 D-aminoacid aminotransferase-like PLP-de 0.860 0.787 0.564 3e-78
>gi|296086080|emb|CBI31521.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 195/303 (64%), Positives = 234/303 (77%), Gaps = 12/303 (3%)

Query: 2   TSTRIVFSNGVVSQASDTPSVSTFLQERRGAYTTTRTHNNGSCLLFWERHLRRLASSARI 61
           TS+R +F+NGV+S+ SDTP VST L+   GAYTT+RTHNN SCLLFWERHL+RLA S RI
Sbjct: 3   TSSRFLFTNGVISRTSDTPPVSTLLEAHSGAYTTSRTHNNTSCLLFWERHLQRLAESTRI 62

Query: 62  LYNSSPNLLFKS--PTPSGLEPIRTPSSSSSLSMWESMIKSLVNDSMNEALPIALKERRD 119
           LYNS P  LFKS  P PS L           LS+W+S+I+SLV+DSMN+A+PI L ERR 
Sbjct: 63  LYNSKPGFLFKSNKPMPSLL----------PLSVWDSVIQSLVHDSMNKAIPIVLNERRS 112

Query: 120 GEELAVTVLVSGDYGKLSGIENMGSDDFLGVFDVSVHFSGYVPFVFGVEGTGARLALVGR 179
           G ELA+T LVSG++ KLS  EN+  +    + DV +H   YVP VFGV    A+LA+VG 
Sbjct: 113 GGELAITTLVSGNFEKLSENENVDEERISQILDVYLHVGSYVPPVFGVRENCAKLAVVGP 172

Query: 180 GRDVAEAKYSDWVRLRKPLEKLRPPSVTELLLSNDGDQLLEGSITNFFVVCRKDNSEAED 239
           GRDVA AKYSDW+RLRKPLEKLRP  VTELLLSNDGDQ+LEG ITNFFVVCR+D+SE + 
Sbjct: 173 GRDVAMAKYSDWLRLRKPLEKLRPDLVTELLLSNDGDQILEGCITNFFVVCREDSSEVKA 232

Query: 240 KFLQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAF 299
           K L    ++ SFEVQTAP+SDGVLPG+IRQ+VIEVC S GIP+RE+A SWS+ ELW+EAF
Sbjct: 233 KNLHDYGSTSSFEVQTAPLSDGVLPGIIRQIVIEVCLSMGIPLREVAPSWSKCELWEEAF 292

Query: 300 ITS 302
           IT+
Sbjct: 293 ITN 295

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225449178|ref|XP_002275527.1| PREDICTED: uncharacterized protein LOC100256538 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356574408|ref|XP_003555340.1| PREDICTED: uncharacterized protein LOC100800620 [Glycine max] Back     alignment and taxonomy information
>gi|255565848|ref|XP_002523913.1| conserved hypothetical protein [Ricinus communis] gi|223536843|gb|EEF38482.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|449451713|ref|XP_004143606.1| PREDICTED: uncharacterized protein LOC101222891 [Cucumis sativus] Back     alignment and taxonomy information
>gi|224109664|ref|XP_002315271.1| predicted protein [Populus trichocarpa] gi|222864311|gb|EEF01442.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297820252|ref|XP_002878009.1| hypothetical protein ARALYDRAFT_324027 [Arabidopsis lyrata subsp. lyrata] gi|297323847|gb|EFH54268.1| hypothetical protein ARALYDRAFT_324027 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|449525028|ref|XP_004169523.1| PREDICTED: uncharacterized LOC101222891, partial [Cucumis sativus] Back     alignment and taxonomy information
>gi|21553997|gb|AAM63078.1| unknown [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|18410169|ref|NP_567011.1| D-aminoacid aminotransferase-like PLP-dependent enzyme-like protein [Arabidopsis thaliana] gi|17381054|gb|AAL36339.1| unknown protein [Arabidopsis thaliana] gi|21280921|gb|AAM45074.1| unknown protein [Arabidopsis thaliana] gi|332645799|gb|AEE79320.1| D-aminoacid aminotransferase-like PLP-dependent enzyme-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query323
TAIR|locus:2082722353 AT3G54970 [Arabidopsis thalian 0.879 0.804 0.562 1.4e-73
TIGR_CMR|CBU_0418281 CBU_0418 "4-amino-4-deoxychori 0.102 0.117 0.454 0.00057
TAIR|locus:2082722 AT3G54970 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 743 (266.6 bits), Expect = 1.4e-73, P = 1.4e-73
 Identities = 172/306 (56%), Positives = 206/306 (67%)

Query:     1 MTSTRIVFSNGVVSQASDTPSVSTFLQERRGAYTTTRTHNNGSCLLFWERHLRRLASSAR 60
             M++ R ++ NGVV +A   P V+TFL+   GAYTTTRT NNG+  LFWERH++RL+SS R
Sbjct:     1 MSNCRFLYHNGVVLEA---PPVTTFLESHTGAYTTTRTINNGTSFLFWERHMKRLSSSIR 57

Query:    61 ILYNSSPNLLFKSPTPSGLEPIRTPXXXXXXXXXXXXXXXLVNDSMNEALP-IALKE--R 117
             IL  S+P LLF S +        +P                VN SM+EAL  + +KE  R
Sbjct:    58 ILLKSNPELLFSSGS--------SPRFWMNQPVPGSSIYDRVNGSMSEALKSVVVKESER 109

Query:   118 RDGEELAVTVLVSGDYGKLSGIENMGSDDFLGVFDVSVHFSGYVPF-VFGVEGTGARLAL 176
               GEELAVTVLV+G+  KL+ ++   + DFL   DV +H   Y P    GV    A LAL
Sbjct:   110 LYGEELAVTVLVTGNVEKLNRLDVGNNWDFL---DVWLHIGAYSPLGPLGVGENAASLAL 166

Query:   177 VGRGRDVAEAKYSDWVRLRKPLEKLRPPSVTELLLSNDGDQLLEGSITNFFVVCRKDNSE 236
             VGRGRDVA AKYSDWVRLRKPLEK RPP  TELLLSNDGD LLEG ITNFFVVCR+  S 
Sbjct:   167 VGRGRDVAAAKYSDWVRLRKPLEKFRPPLTTELLLSNDGDHLLEGCITNFFVVCRRVKS- 225

Query:   237 AEDKFLQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWK 296
             +E+ +  + +    FEVQTAPI+DGVL GVIR LVIEVC S+GIP RE A SWS+ ELW+
Sbjct:   226 SENLYGGSLSE---FEVQTAPITDGVLAGVIRDLVIEVCLSEGIPYRERAPSWSERELWE 282

Query:   297 EAFITS 302
             EAFITS
Sbjct:   283 EAFITS 288
GO:0003824 "catalytic activity" evidence=IEA
GO:0008152 "metabolic process" evidence=IEA
GO:0009507 "chloroplast" evidence=ISM
TIGR_CMR|CBU_0418 CBU_0418 "4-amino-4-deoxychorismate lyase, putative" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query323
cd00449256 cd00449, PLPDE_IV, PyridoxaL 5'-Phosphate Dependen 6e-29
pfam01063231 pfam01063, Aminotran_4, Aminotransferase class IV 2e-12
COG0115284 COG0115, IlvE, Branched-chain amino acid aminotran 6e-09
cd01558270 cd01558, D-AAT_like, D-Alanine aminotransferase (D 9e-09
cd01559249 cd01559, ADCL_like, ADCL_like: 4-Amino-4-deoxychor 1e-08
cd01557279 cd01557, BCAT_beta_family, BCAT_beta_family: Branc 7e-05
PRK06606306 PRK06606, PRK06606, branched-chain amino acid amin 1e-04
PRK08320288 PRK08320, PRK08320, branched-chain amino acid amin 1e-04
PRK06680286 PRK06680, PRK06680, D-amino acid aminotransferase; 2e-04
PRK07546209 PRK07546, PRK07546, hypothetical protein; Provisio 3e-04
PRK12479299 PRK12479, PRK12479, branched-chain amino acid amin 0.002
>gnl|CDD|238254 cd00449, PLPDE_IV, PyridoxaL 5'-Phosphate Dependent Enzymes class IV (PLPDE_IV) Back     alignment and domain information 
 Score =  111 bits (279), Expect = 6e-29
 Identities = 56/277 (20%), Positives = 86/277 (31%), Gaps = 66/277 (23%)

Query: 31  GAYTTTRTHNNGSCLLFWERHLRRLASSARILYNSSPNLLFKSPTPSGLEPIRTPSSSSS 90
           G +   R       L   + HL RL  SA+ L           P                
Sbjct: 9   GVFEGLRAGK--GRLFRLDEHLDRLNRSAKRL-------GLPIPYD-------------- 45

Query: 91  LSMWESMIKSLVNDSMNEALPIALKERRDGEELAVTVLVSGDYGKLSGIENMGSDDFLGV 150
               E + ++L            L    +G  L +  L++   G L G+    S +    
Sbjct: 46  ---REELREAL----------KELVAANNGASLYIRPLLTRGVGGL-GVAPPPSPEPT-F 90

Query: 151 FDVSVHFSGYVPFVFGVEGTGARLALVGRGR-----DVAEAKYSDWVRLRKPLEKLRPPS 205
              +     Y          G RL      R        +AK    +      ++     
Sbjct: 91  VVFASPVGAY----AKGGEKGVRLITSPDRRRAAPGGTGDAKTGGNLNSVLAKQEAAEAG 146

Query: 206 VTELLLSNDGDQLLEGSITNFFVVCRKDNSEAEDKFLQTCNNSHSFEVQTAPISDGVLPG 265
             E LL +D   + EGS +N F+V                      E+ T P+  G+LPG
Sbjct: 147 ADEALLLDDNGYVTEGSASNVFIVKD-------------------GELVTPPLDGGILPG 187

Query: 266 VIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITS 302
           + R  VIE+ +  GI + E   S  +     E F+T 
Sbjct: 188 ITRDSVIELAKELGIKVEERPISLDELYAADEVFLTG 224

This D-amino acid superfamily, one of five classes of PLPDE, consists of branched-chain amino acid aminotransferases (BCAT), D-amino acid transferases (DAAT), and 4-amino-4-deoxychorismate lyases (ADCL). BCAT catalyzes the reversible transamination reaction between the L-branched-chain amino and alpha-keto acids. DAAT catalyzes the synthesis of D-glutamic acid and D-alanine, and ADCL converts 4-amino-4-deoxychorismate to p-aminobenzoate and pyruvate. Except for a few enzymes, i. e., Escherichia coli and Salmonella BCATs, which are homohexamers arranged as a double trimer, the class IV PLPDEs are homodimers. Homodimer formation is required for catalytic activity. Length = 256
>gnl|CDD|216275 pfam01063, Aminotran_4, Aminotransferase class IV Back     alignment and domain information
>gnl|CDD|223193 COG0115, IlvE, Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase [Amino acid transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|238799 cd01558, D-AAT_like, D-Alanine aminotransferase (D-AAT_like): D-amino acid aminotransferase catalyzes transamination between D-amino acids and their respective alpha-keto acids Back     alignment and domain information
>gnl|CDD|238800 cd01559, ADCL_like, ADCL_like: 4-Amino-4-deoxychorismate lyase: is a member of the fold-type IV of PLP dependent enzymes that converts 4-amino-4-deoxychorismate (ADC) to p-aminobenzoate and pyruvate Back     alignment and domain information
>gnl|CDD|238798 cd01557, BCAT_beta_family, BCAT_beta_family: Branched-chain aminotransferase catalyses the transamination of the branched-chain amino acids leusine, isoleucine and valine to their respective alpha-keto acids, alpha-ketoisocaproate, alpha-keto-beta-methylvalerate and alpha-ketoisovalerate Back     alignment and domain information
>gnl|CDD|235841 PRK06606, PRK06606, branched-chain amino acid aminotransferase; Validated Back     alignment and domain information
>gnl|CDD|236238 PRK08320, PRK08320, branched-chain amino acid aminotransferase; Reviewed Back     alignment and domain information
>gnl|CDD|180656 PRK06680, PRK06680, D-amino acid aminotransferase; Reviewed Back     alignment and domain information
>gnl|CDD|169002 PRK07546, PRK07546, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|183549 PRK12479, PRK12479, branched-chain amino acid aminotransferase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 323
PRK12479299 branched-chain amino acid aminotransferase; Provis 100.0
PRK08320288 branched-chain amino acid aminotransferase; Review 100.0
PRK07544292 branched-chain amino acid aminotransferase; Valida 100.0
PRK06606306 branched-chain amino acid aminotransferase; Valida 100.0
PRK13356286 aminotransferase; Provisional 100.0
PRK06680286 D-amino acid aminotransferase; Reviewed 100.0
cd01558270 D-AAT_like D-Alanine aminotransferase (D-AAT_like) 100.0
TIGR01122298 ilvE_I branched-chain amino acid aminotransferase, 100.0
PRK12400290 D-amino acid aminotransferase; Reviewed 100.0
PRK07849292 4-amino-4-deoxychorismate lyase; Provisional 100.0
PRK07650283 4-amino-4-deoxychorismate lyase; Provisional 100.0
TIGR01121276 D_amino_aminoT D-amino acid aminotransferase. Spec 100.0
PLN02845336 Branched-chain-amino-acid aminotransferase-like pr 100.0
PRK06092268 4-amino-4-deoxychorismate lyase; Reviewed 100.0
TIGR03461261 pabC_Proteo aminodeoxychorismate lyase. Members of 100.0
PRK09266266 hypothetical protein; Provisional 100.0
cd00449256 PLPDE_IV PyridoxaL 5'-Phosphate Dependent Enzymes 100.0
PRK13357356 branched-chain amino acid aminotransferase; Provis 100.0
cd01557279 BCAT_beta_family BCAT_beta_family: Branched-chain 100.0
cd01559249 ADCL_like ADCL_like: 4-Amino-4-deoxychorismate lya 100.0
PLN03117355 Branched-chain-amino-acid aminotransferase; Provis 100.0
TIGR01123313 ilvE_II branched-chain amino acid aminotransferase 100.0
PLN02782403 Branched-chain amino acid aminotransferase 100.0
PLN02259388 branched-chain-amino-acid aminotransferase 2 100.0
COG0115284 IlvE Branched-chain amino acid aminotransferase/4- 100.0
PLN02883384 Branched-chain amino acid aminotransferase 100.0
PRK07546209 hypothetical protein; Provisional 100.0
PF01063231 Aminotran_4: Aminotransferase class IV; InterPro: 100.0
KOG0975379 consensus Branched chain aminotransferase BCAT1, p 100.0
PRK07101187 hypothetical protein; Provisional 99.97
>PRK12479 branched-chain amino acid aminotransferase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=8.4e-50  Score=378.59  Aligned_cols=249  Identities=21%  Similarity=0.257  Sum_probs=207.0

Q ss_pred             cEEEECCeeecCCCCCccCccccC---cCeeEEEEEEEcCCccccCHHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCCC
Q 020660            5 RIVFSNGVVSQASDTPSVSTFLQE---RRGAYTTTRTHNNGSCLLFWERHLRRLASSARILYNSSPNLLFKSPTPSGLEP   81 (323)
Q Consensus         5 ~~~~~nG~~~~~~~~~~is~~~~~---G~GvFEt~r~~~g~~~~~~l~~Hl~RL~~Sa~~l~i~~p~~~~~~~~~~~~~~   81 (323)
                      +++|+||+++ +.+++.++++||+   |||+|||||+++|  ++++|++|++||.+||+.|+|+.|              
T Consensus         4 ~~~~~nG~~~-~~~~~~i~~~drg~~~GdgvFEt~r~~~g--~~~~l~~Hl~RL~~Sa~~l~i~~p--------------   66 (299)
T PRK12479          4 QYIYMNGEFV-EKEKAVVSVYDHGFLYGDGVFEGIRSYGG--NVFCLKEHVKRLYESAKSILLTIP--------------   66 (299)
T ss_pred             cEEEECCEEe-EHHHCccccccchhheeeeEEEEEEEECC--EecCHHHHHHHHHHHHHHhCCCCC--------------
Confidence            5699999999 9999999999986   9999999999999  999999999999999999999643              


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhhhhccchhhhhhcCCCCceEEEEEEEeecCCCCCcccCCCCCCCcceEEEEEEecCC
Q 020660           82 IRTPSSSSSLSMWESMIKSLVNDSMNEALPIALKERRDGEELAVTVLVSGDYGKLSGIENMGSDDFLGVFDVSVHFSGYV  161 (323)
Q Consensus        82 ~~~~~~~~~~~~l~~~i~~lv~~~~~~~~~~~~~~~~~~~~~~vri~v~~g~g~~~~~~~~g~~~~~~~~~~~v~~~~~~  161 (323)
                             ++.+++++.+.++++             .++..+++||++++++.+.+++.     +.....+++++.+.|++
T Consensus        67 -------~~~~~l~~~i~~~i~-------------~~~~~~~~ir~~v~rg~g~~g~~-----~~~~~~~~~~i~~~~~~  121 (299)
T PRK12479         67 -------LTVDEMEEAVLQTLQ-------------KNEYADAYIRLIVSRGKGDLGLD-----PRSCVKPSVIIIAEQLK  121 (299)
T ss_pred             -------CCHHHHHHHHHHHHH-------------HcCCCCeEEEEEEEecCCCCCCC-----CccCCCceEEEEEEEcc
Confidence                   578899999998887             35556789999999988765443     12334567788878776


Q ss_pred             CccccccCCCceEEEeccccccccccccccccc---chHHH--hhCCCCCCeEEEecCCCeEEecCcceEEEEEcCCCCc
Q 020660          162 PFVFGVEGTGARLALVGRGRDVAEAKYSDWVRL---RKPLE--KLRPPSVTELLLSNDGDQLLEGSITNFFVVCRKDNSE  236 (323)
Q Consensus       162 ~~~~~~~~~g~~l~~~~~~r~~~~~k~~~~~~~---~~~l~--~a~~~g~de~lL~~~gg~v~Eg~~sNlF~v~~~~~~~  236 (323)
                      +.....+.+|+++.++...|..+.......|+.   .++++  +|+++|+||+|+.|++|+|+|++++|+|++++++   
T Consensus       122 ~~~~~~~~~gv~~~~~~~~r~~~~~~~~~~K~~nyl~~vla~~ea~~~g~de~l~ld~~g~v~E~s~sNlf~v~~~~---  198 (299)
T PRK12479        122 LFPQEFYDNGLSVVSVASRRNTPDALDPRIKSMNYLNNVLVKIEAAQAGVLEALMLNQQGYVCEGSGDNVFVVKDGK---  198 (299)
T ss_pred             cCChhHHhCCeEEEEEeEeccCCCccCccchhhhhHHHHHHHHHHHHcCCCEEEEEcCCCcEEECCceEEEEEECCE---
Confidence            443334467888888887776543222233333   24444  6888999999777655599999999999999988   


Q ss_pred             hhhhhhhhcCCCCccEEEecCCCCCCCccHHHHHHHHHHHhCCCcEEEEecCHHHHhhcceeEEecCccceEEEEEec
Q 020660          237 AEDKFLQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITSKYSSSFDLIAQK  314 (323)
Q Consensus       237 ~~~~~~~~~~~~~~~~l~TPpl~~giL~GitR~~vl~la~~~gi~v~e~~~~~~dL~~adEvFltns~~gv~pV~~~~  314 (323)
                                      |+|||+++|+||||||+.|+++|+++|++|+|+.++++||.+|||+|+|||++||+||.+.+
T Consensus       199 ----------------l~TP~l~~giL~GItR~~il~~~~~~g~~v~e~~i~~~~L~~adevfltnS~~gi~PV~~id  260 (299)
T PRK12479        199 ----------------VLTPPSYLGALEGITRNSVIELCERLSIPCEERPFTRHDVYVADEVFLTGTAAELIPVVKVD  260 (299)
T ss_pred             ----------------EEeCCCcCCCCcCHHHHHHHHHHHHcCCeEEEEeCCHHHHHhCCeeeeecCcccEEEEEEEC
Confidence                            99999999999999999999999999999999999999999999999999999999999854

>PRK08320 branched-chain amino acid aminotransferase; Reviewed Back     alignment and domain information
>PRK07544 branched-chain amino acid aminotransferase; Validated Back     alignment and domain information
>PRK06606 branched-chain amino acid aminotransferase; Validated Back     alignment and domain information
>PRK13356 aminotransferase; Provisional Back     alignment and domain information
>PRK06680 D-amino acid aminotransferase; Reviewed Back     alignment and domain information
>cd01558 D-AAT_like D-Alanine aminotransferase (D-AAT_like): D-amino acid aminotransferase catalyzes transamination between D-amino acids and their respective alpha-keto acids Back     alignment and domain information
>TIGR01122 ilvE_I branched-chain amino acid aminotransferase, group I Back     alignment and domain information
>PRK12400 D-amino acid aminotransferase; Reviewed Back     alignment and domain information
>PRK07849 4-amino-4-deoxychorismate lyase; Provisional Back     alignment and domain information
>PRK07650 4-amino-4-deoxychorismate lyase; Provisional Back     alignment and domain information
>TIGR01121 D_amino_aminoT D-amino acid aminotransferase Back     alignment and domain information
>PLN02845 Branched-chain-amino-acid aminotransferase-like protein Back     alignment and domain information
>PRK06092 4-amino-4-deoxychorismate lyase; Reviewed Back     alignment and domain information
>TIGR03461 pabC_Proteo aminodeoxychorismate lyase Back     alignment and domain information
>PRK09266 hypothetical protein; Provisional Back     alignment and domain information
>cd00449 PLPDE_IV PyridoxaL 5'-Phosphate Dependent Enzymes class IV (PLPDE_IV) Back     alignment and domain information
>PRK13357 branched-chain amino acid aminotransferase; Provisional Back     alignment and domain information
>cd01557 BCAT_beta_family BCAT_beta_family: Branched-chain aminotransferase catalyses the transamination of the branched-chain amino acids leusine, isoleucine and valine to their respective alpha-keto acids, alpha-ketoisocaproate, alpha-keto-beta-methylvalerate and alpha-ketoisovalerate Back     alignment and domain information
>cd01559 ADCL_like ADCL_like: 4-Amino-4-deoxychorismate lyase: is a member of the fold-type IV of PLP dependent enzymes that converts 4-amino-4-deoxychorismate (ADC) to p-aminobenzoate and pyruvate Back     alignment and domain information
>PLN03117 Branched-chain-amino-acid aminotransferase; Provisional Back     alignment and domain information
>TIGR01123 ilvE_II branched-chain amino acid aminotransferase, group II Back     alignment and domain information
>PLN02782 Branched-chain amino acid aminotransferase Back     alignment and domain information
>PLN02259 branched-chain-amino-acid aminotransferase 2 Back     alignment and domain information
>COG0115 IlvE Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase [Amino acid transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>PLN02883 Branched-chain amino acid aminotransferase Back     alignment and domain information
>PRK07546 hypothetical protein; Provisional Back     alignment and domain information
>PF01063 Aminotran_4: Aminotransferase class IV; InterPro: IPR001544 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue Back     alignment and domain information
>KOG0975 consensus Branched chain aminotransferase BCAT1, pyridoxal phosphate enzymes type IV superfamily [Amino acid transport and metabolism] Back     alignment and domain information
>PRK07101 hypothetical protein; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query323
3sno_A315 Hypothetical aminotransferase; D-aminoacid aminotr 1e-13
1i2k_A269 4-amino-4-deoxychorismate lyase; pyridoxal phospha 2e-12
1i2k_A269 4-amino-4-deoxychorismate lyase; pyridoxal phospha 5e-04
3lul_A272 4-amino-4-deoxychorismate lyase; structural genomi 3e-12
2xpf_A292 4-amino-4-deoxychorismate lyase; para-aminobenzoic 2e-11
3daa_A277 D-amino acid aminotransferase; pyridoxal phosphate 4e-11
3csw_A285 BCAT, putative branched-chain-amino-acid aminotran 4e-09
1iye_A309 Branched-chain amino acid aminotransferase; hexame 5e-08
2zgi_A246 Putative 4-amino-4-deoxychorismate lyase; TTHA0621 1e-07
3qqm_A221 MLR3007 protein; structural genomics, joint center 2e-07
3ceb_A194 D-aminoacid aminotransferase-like PLP-dependent E; 6e-07
3u0g_A328 Putative branched-chain amino acid aminotransfera; 8e-07
2eiy_A308 ILVE, branched-chain amino acid aminotransferase; 1e-06
2coi_A386 Branched chain aminotransferase 1, cytosolic; PLP- 5e-05
2a1h_A365 Branched chain aminotransferase; fold type IV; HET 6e-05
3dth_A372 Branched-chain amino acid aminotransferase; open t 3e-04
>3sno_A Hypothetical aminotransferase; D-aminoacid aminotransferase-like PLP-dependent enzymes, STR genomics; HET: MSE; 1.60A {Corynebacterium glutamicum} Length = 315 Back     alignment and structure
 Score = 69.3 bits (170), Expect = 1e-13
 Identities = 41/334 (12%), Positives = 81/334 (24%), Gaps = 103/334 (30%)

Query: 4   TRIVFSNGVVSQASD--TPSVSTFLQERRGA------YTTTRTHNNGSCLLFWERHLRRL 55
             IV   G   +  +   P V                + T    +         RH  R 
Sbjct: 16  ILIVEPYGGSIRQQNPNLPMVFWD---DAALTRGDGIFETLLIRDG--HACNVRRHGERF 70

Query: 56  ASSARILYNSSPNLLFKSPTPSGLEPIRTPSSSSSLSMWESMIKSLVNDSMNEALPIALK 115
            +SA +L                   +  P        WE   +  +             
Sbjct: 71  KASAALLG------------------LPEPILED----WEKATQMGIES---------WY 99

Query: 116 ERRDGEELAVTVLVSGDYGKLSGIENMGSDDFLGVFDVSVHFSGYVPFVFGVEGTGARLA 175
              +  E + T  +S       G  + G         +++             G     +
Sbjct: 100 SHPNAGEASCTWTLSR------GRSSTGLA----SGWLTITPVSSDKLAQREHGVSVMTS 149

Query: 176 LVGRGRDVAEAKYSDWVRL------RKPLEKLRP--------PSV-----------TELL 210
             G   D          R       R P   L           ++            +++
Sbjct: 150 SRGYSIDTGLPGIGKATRGELSKVERTPAPWLTVGAKTLAYAANMAALRYAKSNGFDDVI 209

Query: 211 LSNDGDQLLEGSITNFFVVCRKDNSEAEDKFLQTCNNSHSFEVQTAPISDGVLPGVIRQL 270
            ++   ++LEG+ +       K +                 +++T      +LPG  +  
Sbjct: 210 FTDGD-RVLEGATSTVVSF--KGD-----------------KIRTPSPGGDILPGTTQAA 249

Query: 271 VIEVCRSKGIPIRELASSWSQHELWK--EAFITS 302
           +      KG   +E     S  +L+     ++ S
Sbjct: 250 LFAHATEKGWRCKE--KDLSIDDLFGADSVWLVS 281
>1i2k_A 4-amino-4-deoxychorismate lyase; pyridoxal phosphate, PABC; HET: PLP; 1.79A {Escherichia coli} SCOP: e.17.1.1 PDB: 1et0_A* 1i2l_A* Length = 269 Back     alignment and structure
>1i2k_A 4-amino-4-deoxychorismate lyase; pyridoxal phosphate, PABC; HET: PLP; 1.79A {Escherichia coli} SCOP: e.17.1.1 PDB: 1et0_A* 1i2l_A* Length = 269 Back     alignment and structure
>3lul_A 4-amino-4-deoxychorismate lyase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2, pyridoxal phosphate; HET: MSE LLP; 1.78A {Legionella pneumophila} Length = 272 Back     alignment and structure
>3daa_A D-amino acid aminotransferase; pyridoxal phosphate, transaminase; HET: PDD; 1.90A {Bacillus SP} SCOP: e.17.1.1 PDB: 4daa_A* 3lqs_A* 1daa_A* 2daa_A* 5daa_A* 1g2w_A* 1a0g_A* 2dab_A* Length = 277 Back     alignment and structure
>3csw_A BCAT, putative branched-chain-amino-acid aminotransfera; TM0831, putative branched-chain amino acid aminotransferase; HET: PLP CIT; 2.15A {Thermotoga maritima MSB8} Length = 285 Back     alignment and structure
>1iye_A Branched-chain amino acid aminotransferase; hexamer, PLP; HET: PGU; 1.82A {Escherichia coli} SCOP: e.17.1.1 PDB: 1i1l_A* 1i1m_A* 1iyd_A* 1i1k_A* 1a3g_A* Length = 309 Back     alignment and structure
>2zgi_A Putative 4-amino-4-deoxychorismate lyase; TTHA0621, PLP cofactor, pyridoxal enzyme, structural NPPSFA; HET: PLP PGE; 1.93A {Thermus thermophilus} Length = 246 Back     alignment and structure
>3qqm_A MLR3007 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, transferase; HET: LLP; 2.30A {Mesorhizobium loti} Length = 221 Back     alignment and structure
>3ceb_A D-aminoacid aminotransferase-like PLP-dependent E; joint center for structural genomics, protein structure initiative, PSI-2, lyase; HET: LLP; 2.40A {Haemophilus somnus} Length = 194 Back     alignment and structure
>3u0g_A Putative branched-chain amino acid aminotransfera; structural genomics, seattle structural genomics center for infectious disease; 1.90A {Burkholderia pseudomallei} Length = 328 Back     alignment and structure
>2eiy_A ILVE, branched-chain amino acid aminotransferase; PLP-dependent enzyme; HET: PLP; 1.35A {Thermus thermophilus} PDB: 1wrv_A* 2ej0_A* 2ej2_A* 2ej3_A* Length = 308 Back     alignment and structure
>2coi_A Branched chain aminotransferase 1, cytosolic; PLP-dependent enzyme; HET: PLP GBN; 1.90A {Homo sapiens} PDB: 2cog_A* 2coj_A* 2abj_A* Length = 386 Back     alignment and structure
>2a1h_A Branched chain aminotransferase; fold type IV; HET: PLP GBN; 1.80A {Homo sapiens} SCOP: e.17.1.1 PDB: 1ekp_A* 1ekv_A* 1ekf_A* 1kta_A* 1kt8_A* 2hhf_B* 2hhf_A* 2hgw_A* 2hg8_A* 2hgx_A* 2hdk_A* Length = 365 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query323
3daa_A277 D-amino acid aminotransferase; pyridoxal phosphate 100.0
1i2k_A269 4-amino-4-deoxychorismate lyase; pyridoxal phospha 100.0
3lul_A272 4-amino-4-deoxychorismate lyase; structural genomi 100.0
3u0g_A328 Putative branched-chain amino acid aminotransfera; 100.0
1iye_A309 Branched-chain amino acid aminotransferase; hexame 100.0
3sno_A315 Hypothetical aminotransferase; D-aminoacid aminotr 100.0
2eiy_A308 ILVE, branched-chain amino acid aminotransferase; 100.0
2xpf_A292 4-amino-4-deoxychorismate lyase; para-aminobenzoic 100.0
4dqn_A345 Putative branched-chain amino acid aminotransfera; 100.0
3dth_A372 Branched-chain amino acid aminotransferase; open t 100.0
2a1h_A365 Branched chain aminotransferase; fold type IV; HET 100.0
3uzo_A358 Branched-chain-amino-acid aminotransferase; BCAT, 100.0
3csw_A285 BCAT, putative branched-chain-amino-acid aminotran 100.0
2coi_A386 Branched chain aminotransferase 1, cytosolic; PLP- 100.0
2zgi_A246 Putative 4-amino-4-deoxychorismate lyase; TTHA0621 100.0
3dtg_A372 Branched-chain amino acid aminotransferase; open t 100.0
3qqm_A221 MLR3007 protein; structural genomics, joint center 100.0
3ceb_A194 D-aminoacid aminotransferase-like PLP-dependent E; 100.0
>3daa_A D-amino acid aminotransferase; pyridoxal phosphate, transaminase; HET: PDD; 1.90A {Bacillus SP} SCOP: e.17.1.1 PDB: 4daa_A* 3lqs_A* 1daa_A* 2daa_A* 5daa_A* 1g2w_A* 1a0g_A* 2dab_A* Back     alignment and structure
Probab=100.00  E-value=3.2e-50  Score=376.34  Aligned_cols=245  Identities=16%  Similarity=0.147  Sum_probs=206.3

Q ss_pred             EEEECCeeecCCCCCccCccccC---cCeeEEEEEEEcCCccccCHHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCCCC
Q 020660            6 IVFSNGVVSQASDTPSVSTFLQE---RRGAYTTTRTHNNGSCLLFWERHLRRLASSARILYNSSPNLLFKSPTPSGLEPI   82 (323)
Q Consensus         6 ~~~~nG~~~~~~~~~~is~~~~~---G~GvFEt~r~~~g~~~~~~l~~Hl~RL~~Sa~~l~i~~p~~~~~~~~~~~~~~~   82 (323)
                      ++|+||+++ |.+++.+++.|++   |||+|||||+++|  ++|+|++|++||.+||+.|+|+.                
T Consensus         2 ~~~~nG~~~-~~~~~~i~~~d~g~~yGdgvFEtir~~~g--~~f~l~~Hl~RL~~Sa~~l~i~~----------------   62 (277)
T 3daa_A            2 YTLWNDQIV-KDEEVKIDKEDRGYQFGDGVYEVVKVYNG--EMFTVNEHIDRLYASAEKIRITI----------------   62 (277)
T ss_dssp             EEEETTEEE-EGGGCCBCTTBHHHHTCCEEEEEEEEETT--EETTHHHHHHHHHHHHHHTTCCC----------------
T ss_pred             EEEECCEEe-EhHHCeechhhhHHhcccEEEEEEEEECC--EEcCHHHHHHHHHHHHHhcCCCC----------------
Confidence            689999999 9999999999965   9999999999999  89999999999999999999953                


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhhhhccchhhhhhcCCCCceEEEEEEEeecCCCCCcccCCCCC-CCcceEEEEEEecCC
Q 020660           83 RTPSSSSSLSMWESMIKSLVNDSMNEALPIALKERRDGEELAVTVLVSGDYGKLSGIENMGSDD-FLGVFDVSVHFSGYV  161 (323)
Q Consensus        83 ~~~~~~~~~~~l~~~i~~lv~~~~~~~~~~~~~~~~~~~~~~vri~v~~g~g~~~~~~~~g~~~-~~~~~~~~v~~~~~~  161 (323)
                           +++.++|.+.|.++++             +++..+++||+++++|.+.+++.     .+ .+..+++++.+.|++
T Consensus        63 -----~~~~~~l~~~i~~li~-------------~n~~~~~~lri~vtrG~~~r~~~-----~p~~~~~~~~~i~~~p~~  119 (277)
T 3daa_A           63 -----PYTKDKFHQLLHELVE-------------KNELNTGHIYFQVTRGTSPRAHQ-----FPENTVKPVIIGYTKENP  119 (277)
T ss_dssp             -----SSCHHHHHHHHHHHHH-------------HHTCCSEEEEEEEESCBCSCCSS-----CCSSCCCCEEEEEEEECC
T ss_pred             -----CCCHHHHHHHHHHHHH-------------hcCCCcEEEEEEEEecCCCcCCC-----CCCCCCCcEEEEEEEECC
Confidence                 3589999999999998             34557899999999988765432     12 345678888888887


Q ss_pred             CccccccCCCceEEEeccccc-ccccccccccccchHHH--hhCCCCCCeEEEecCCCeEEecCcceEEEEEcCCCCchh
Q 020660          162 PFVFGVEGTGARLALVGRGRD-VAEAKYSDWVRLRKPLE--KLRPPSVTELLLSNDGDQLLEGSITNFFVVCRKDNSEAE  238 (323)
Q Consensus       162 ~~~~~~~~~g~~l~~~~~~r~-~~~~k~~~~~~~~~~l~--~a~~~g~de~lL~~~gg~v~Eg~~sNlF~v~~~~~~~~~  238 (323)
                      +.. ..+.+|+++.++...|. .+..|..++.  .++++  +|+++|+||+|+.++| +|+||+++|||++++++     
T Consensus       120 ~~~-~~~~~gv~~~~~~~~r~~~~~~Kt~nyl--~~~la~~eA~~~g~~e~l~l~~g-~v~E~~~sNif~~~~~~-----  190 (277)
T 3daa_A          120 RPL-ENLEKGVKATFVEDIRWLRCDIKSLNLL--GAVLAKQEAHEKGCYEAILHRNN-TVTEGSSSNVFGIKDGI-----  190 (277)
T ss_dssp             CCH-HHHHHCEEEEEEECCCCSCTTSCBSCCH--HHHHHHHHHHHTTCSEEEEEETT-EEEEETTBEEEEEETTE-----
T ss_pred             CCh-HHHhCCeEEEEecCccccCCCcchhhhH--HHHHHHHHHHHCCCCEEEEEcCC-EEEEcCceEEEEEECCE-----
Confidence            532 33356899888765442 2455544332  24444  6888999999776665 99999999999999988     


Q ss_pred             hhhhhhcCCCCccEEEecCCCCCCCccHHHHHHHHHHHhCCCcEEEEecCHHHHhhcceeEEecCccceEEEEEech
Q 020660          239 DKFLQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITSKYSSSFDLIAQKR  315 (323)
Q Consensus       239 ~~~~~~~~~~~~~~l~TPpl~~giL~GitR~~vl~la~~~gi~v~e~~~~~~dL~~adEvFltns~~gv~pV~~~~~  315 (323)
                                    |+|||+++++|+||||+.||++|+++|++|+|+.++++||..|||+|+|||++||+||.+.+.
T Consensus       191 --------------l~TP~~~~~iL~GitR~~vl~~~~~~g~~v~e~~i~~~el~~adevf~~ns~~~i~pV~~id~  253 (277)
T 3daa_A          191 --------------LYTHPANNMILKGITRDVVIACANEINMPVKEIPFTTHEALKMDELFVTSTTSEITPVIEIDG  253 (277)
T ss_dssp             --------------EEECCSSTTSCCCHHHHHHHHHHHHTTCCEECCCCBHHHHHTCSEEEEEETTTEEEEEEEETT
T ss_pred             --------------EECCCCcCCCCccHHHHHHHHHHHHcCCeEEEEeCCHHHHHhcCeeeeecChhhEEEEEEECC
Confidence                          999999999999999999999999999999999999999999999999999999999998653
>1i2k_A 4-amino-4-deoxychorismate lyase; pyridoxal phosphate, PABC; HET: PLP; 1.79A {Escherichia coli} SCOP: e.17.1.1 PDB: 1et0_A* 1i2l_A* Back     alignment and structure
>3lul_A 4-amino-4-deoxychorismate lyase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2, pyridoxal phosphate; HET: MSE LLP; 1.78A {Legionella pneumophila} Back     alignment and structure
>3u0g_A Putative branched-chain amino acid aminotransfera; structural genomics, seattle structural genomics center for infectious disease; 1.90A {Burkholderia pseudomallei} Back     alignment and structure
>1iye_A Branched-chain amino acid aminotransferase; hexamer, PLP; HET: PGU; 1.82A {Escherichia coli} SCOP: e.17.1.1 PDB: 1i1l_A* 1i1m_A* 1iyd_A* 1i1k_A* 1a3g_A* Back     alignment and structure
>3sno_A Hypothetical aminotransferase; D-aminoacid aminotransferase-like PLP-dependent enzymes, STR genomics; HET: MSE; 1.60A {Corynebacterium glutamicum} Back     alignment and structure
>2eiy_A ILVE, branched-chain amino acid aminotransferase; PLP-dependent enzyme; HET: PLP; 1.35A {Thermus thermophilus} PDB: 1wrv_A* 2ej0_A* 2ej2_A* 2ej3_A* Back     alignment and structure
>4dqn_A Putative branched-chain amino acid aminotransfera; aminotransferase, transferase; 1.97A {Streptococcus mutans} Back     alignment and structure
>2a1h_A Branched chain aminotransferase; fold type IV; HET: PLP GBN; 1.80A {Homo sapiens} SCOP: e.17.1.1 PDB: 1ekp_A* 1ekv_A* 1ekf_A* 1kta_A* 1kt8_A* 2hhf_B* 2hhf_A* 2hgw_A* 2hg8_A* 2hgx_A* 2hdk_A* Back     alignment and structure
>3uzo_A Branched-chain-amino-acid aminotransferase; BCAT, amino-acid biosynthesis, branched-CH acid biosynthesis, pyridoxal phosphate, L-GLUT; HET: PLP GLU; 2.00A {Deinococcus radiodurans} PDB: 3uzb_A* 3uyy_A* Back     alignment and structure
>3csw_A BCAT, putative branched-chain-amino-acid aminotransfera; TM0831, putative branched-chain amino acid aminotransferase; HET: PLP CIT; 2.15A {Thermotoga maritima MSB8} Back     alignment and structure
>2coi_A Branched chain aminotransferase 1, cytosolic; PLP-dependent enzyme; HET: PLP GBN; 1.90A {Homo sapiens} PDB: 2cog_A* 2coj_A* 2abj_A* Back     alignment and structure
>2zgi_A Putative 4-amino-4-deoxychorismate lyase; TTHA0621, PLP cofactor, pyridoxal enzyme, structural NPPSFA; HET: PLP PGE; 1.93A {Thermus thermophilus} Back     alignment and structure
>3dtg_A Branched-chain amino acid aminotransferase; open twisted alpha/beta; HET: PLP; 1.90A {Mycobacterium smegmatis} PDB: 3dtf_A* 3jz6_A* 3ht5_A* Back     alignment and structure
>3qqm_A MLR3007 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, transferase; HET: LLP; 2.30A {Mesorhizobium loti} Back     alignment and structure
>3ceb_A D-aminoacid aminotransferase-like PLP-dependent E; joint center for structural genomics, protein structure initiative, PSI-2, lyase; HET: LLP; 2.40A {Haemophilus somnus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 323
d1i2ka_269 e.17.1.1 (A:) Aminodeoxychorismate lyase {Escheric 0.004
>d1i2ka_ e.17.1.1 (A:) Aminodeoxychorismate lyase {Escherichia coli [TaxId: 562]} Length = 269 Back     information, alignment and structure

class: Multi-domain proteins (alpha and beta)
fold: D-aminoacid aminotransferase-like PLP-dependent enzymes
superfamily: D-aminoacid aminotransferase-like PLP-dependent enzymes
family: D-aminoacid aminotransferase-like PLP-dependent enzymes
domain: Aminodeoxychorismate lyase
species: Escherichia coli [TaxId: 562]

 Score = 35.8 bits (81), Expect = 0.004
 Identities = 8/34 (23%), Positives = 15/34 (44%), Gaps = 2/34 (5%)

Query: 31 GAYTTTRTHNNGSCLLFWERHLRRLASSARILYN 64
          G +TT R  +    +     H++RL  + + L  
Sbjct: 24 GCFTTARVIDGK--VSLLSAHIQRLQDACQRLMI 55

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query323
d1iyea_304 Branched-chain aminoacid aminotransferase {Escheri 100.0
d1i2ka_269 Aminodeoxychorismate lyase {Escherichia coli [TaxI 100.0
d1daaa_277 D-aminoacid aminotransferase {Bacillus sp., strain 100.0
d2a1ha1363 Branched-chain aminoacid aminotransferase {Human ( 100.0
>d1iyea_ e.17.1.1 (A:) Branched-chain aminoacid aminotransferase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: D-aminoacid aminotransferase-like PLP-dependent enzymes
superfamily: D-aminoacid aminotransferase-like PLP-dependent enzymes
family: D-aminoacid aminotransferase-like PLP-dependent enzymes
domain: Branched-chain aminoacid aminotransferase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.8e-48  Score=363.38  Aligned_cols=252  Identities=15%  Similarity=0.151  Sum_probs=204.9

Q ss_pred             ccEEEECCeeecCCCCCccCccccC---cCeeEEEEEEEcCC--ccccCHHHHHHHHHHHHHHhcCcCCCCCCCCCCCCC
Q 020660            4 TRIVFSNGVVSQASDTPSVSTFLQE---RRGAYTTTRTHNNG--SCLLFWERHLRRLASSARILYNSSPNLLFKSPTPSG   78 (323)
Q Consensus         4 ~~~~~~nG~~~~~~~~~~is~~~~~---G~GvFEt~r~~~g~--~~~~~l~~Hl~RL~~Sa~~l~i~~p~~~~~~~~~~~   78 (323)
                      ...+|+||+++ |.+++.+|++|++   |||||||||+++|+  ..+|+|++|++||.+||+.|+|+.|           
T Consensus         2 ~~~i~~nG~~~-~~~~a~i~~~d~g~~yGdgvFEt~r~~~g~~~~~lf~l~~Hl~RL~~Sa~~l~i~~~-----------   69 (304)
T d1iyea_           2 ADYIWFNGEMV-RWEDAKVHVMSHALHYGTSVFEGIRCYDSHKGPVVFRHREHMQRLHDSAKIYRFPVS-----------   69 (304)
T ss_dssp             CSEEEETTEEE-EGGGCCCCTTCHHHHHCCEEECCEEEECCTTSSEEETHHHHHHHHHHHHHHHTCCCC-----------
T ss_pred             CCEEEECCEEe-ehHHCccCccccHHhhceeeeecEEEEECCCCCeecCHHHHHHHHHHhcccccCCCc-----------
Confidence            34699999999 9999999999976   99999999999982  1278999999999999999999644           


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHhhhhccchhhhhhcCCCCceEEEEEEEeecCCCCCcccCCCCCCCcceEEEEEEe
Q 020660           79 LEPIRTPSSSSSLSMWESMIKSLVNDSMNEALPIALKERRDGEELAVTVLVSGDYGKLSGIENMGSDDFLGVFDVSVHFS  158 (323)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~i~~lv~~~~~~~~~~~~~~~~~~~~~~vri~v~~g~g~~~~~~~~g~~~~~~~~~~~v~~~  158 (323)
                                .+.+.+.+++.++++             +++..+++||+.++++.+.+++.     .+....+.+.+...
T Consensus        70 ----------~~~~~~~~~~~~~v~-------------~n~~~~~~vr~~~~~~~~~~~~~-----~~~~~~~~~~~~~~  121 (304)
T d1iyea_          70 ----------QSIDELMEACRDVIR-------------KNNLTSAYIRPLIFVGDVGMGVN-----PPAGYSTDVIIAAF  121 (304)
T ss_dssp             ----------SCHHHHHHHHHHHHH-------------HTTCSSEEEEEEEEECSSCSSSS-----CCTTCCEEEEEEEE
T ss_pred             ----------chhhHHHHHHHHHHH-------------hcccccceEEEEeeecccccccC-----Cccccccceeeccc
Confidence                      478888888888887             46678899999999887654332     23334566666666


Q ss_pred             cCCCcc-ccccCCCceEEEecccccccccc-cccccccc---hH--HHhhCCCCCCeEEEecCCCeEEecCcceEEEEEc
Q 020660          159 GYVPFV-FGVEGTGARLALVGRGRDVAEAK-YSDWVRLR---KP--LEKLRPPSVTELLLSNDGDQLLEGSITNFFVVCR  231 (323)
Q Consensus       159 ~~~~~~-~~~~~~g~~l~~~~~~r~~~~~k-~~~~~~~~---~~--l~~a~~~g~de~lL~~~gg~v~Eg~~sNlF~v~~  231 (323)
                      |..... ...+..|+++.+....|..|... ....+..+   +.  ..+|+++|++|+||.+++|+|+||+++|||++++
T Consensus       122 ~~~~~~~~~~~~~gi~~~~~~~~r~~~~~~~~~~~k~~n~~~~~~a~~~A~~~g~deal~ld~~g~v~E~s~sNif~vk~  201 (304)
T d1iyea_         122 PWGAYLGAEALEQGIDAMVSSWNRAAPNTIPTAAKAGGNYLSSLLVGSEARRHGYQEGIALDVNGYISEGAGENLFEVKD  201 (304)
T ss_dssp             CCCCTTCTTHHHHCEEEEECSSCCCCTTTSCTTSCBGGGHHHHHHHHHHHHHTTCSEEEEECTTSBEEEETTBEEEEEET
T ss_pred             cccccCChhhccCceEEEEeeccccCCCCcccccccccCccccchhhhHHHHcCCcceeeecccCeEeecCceeEEEEeC
Confidence            654432 12234688888888888776542 22233332   22  3368899999997766555999999999999999


Q ss_pred             CCCCchhhhhhhhcCCCCccEEEecCCCCCCCccHHHHHHHHHHHhCCCcEEEEecCHHHHhhcceeEEecCccceEEEE
Q 020660          232 KDNSEAEDKFLQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITSKYSSSFDLI  311 (323)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~l~TPpl~~giL~GitR~~vl~la~~~gi~v~e~~~~~~dL~~adEvFltns~~gv~pV~  311 (323)
                      ++                   |+|||+++++|+||||+.|+++|++.|++|+|++++++||.+|||+|+|||++||+||+
T Consensus       202 ~~-------------------l~TP~~~~~iL~GItR~~vi~~~~~~gi~v~e~~i~~~~L~~AdEvfltns~~gi~PV~  262 (304)
T d1iyea_         202 GV-------------------LFTPPFTSSALPGITRDAIIKLAKELGIEVREQVLSRESLYLADEVFMSGTAAEITPVR  262 (304)
T ss_dssp             TE-------------------EEECCGGGTCCCCHHHHHHHHHHHHTTCCEEECCCBTTHHHHCSEEEEEETTTEEEEEE
T ss_pred             CE-------------------EEEeecccccCCchHHHHHHHHhhhcccceeeccCCHHHHHhhCHHhhhCCCCeEEEEE
Confidence            98                   99999999999999999999999999999999999999999999999999999999999


Q ss_pred             Eec
Q 020660          312 AQK  314 (323)
Q Consensus       312 ~~~  314 (323)
                      +.+
T Consensus       263 ~id  265 (304)
T d1iyea_         263 SVD  265 (304)
T ss_dssp             EET
T ss_pred             EEC
Confidence            864
>d1i2ka_ e.17.1.1 (A:) Aminodeoxychorismate lyase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1daaa_ e.17.1.1 (A:) D-aminoacid aminotransferase {Bacillus sp., strain YM-1 [TaxId: 1409]} Back     information, alignment and structure
>d2a1ha1 e.17.1.1 (A:3-365) Branched-chain aminoacid aminotransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]} Back     information, alignment and structure