Citrus Sinensis ID: 020680

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320---
MPSNGALEDTKVPLLDDLASTVPSEDDSDKNLTRTIWVESKKLWYIVGPAIFSRLASYSMLVITQAFAGHLGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYYMLGVYMQRSWIVLFVCCVLLLPLYLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAWVSLVALLVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSCGGCPLTWTGFTLEAFSGLWQFVKLSAASGVMLCLENWYYRILISMTGNLQNAEIAVDALSICMTINGWEMMIPLAFFAGTG
cccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHEEEcccccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
cccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHcHccccc
mpsngaledtkvpllddlastvpseddsdknltRTIWVESKKLWYIVGPAIFSRLASYSMLVITQAFAGHLGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYYMLGVYMQRSWIVLFVCCVLLLplylfaspvlkllgqpddvaelSGMVSIWMIplhfsfafqfpLQRFLQSQLKNMVIAWVSLVALLVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFgyvscggcpltwtgfTLEAFSGLWQFVKLSAASGVMLCLENWYYRILISMTGNLQNAEIAVDALSICMTINGWEMMIPLAFFAGTG
mpsngaledtkvpllddlastvpseddsdknltrtiwveskklwYIVGPAIFSRLASYSMLVITQAFAGHLGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYYMLGVYMQRSWIVLFVCCVLLLPLYLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAWVSLVALLVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSCGGCPLTWTGFTLEAFSGLWQFVKLSAASGVMLCLENWYYRILISMTGNLQNAEIAVDALSICMTINGWEMMIPLAFFAGTG
MPSNGALEDTKVPLLDDLASTVPSEDDSDKNLTRTIWVESKKLWYIVGPAIFSRLASYSMLVITQAFAGHLGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYYMLGVYMQRSWIvlfvccvlllplylfASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAWVSLVALLVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSCGGCPLTWTGFTLEAFSGLWQFVKLSAASGVMLCLENWYYRILISMTGNLQNAEIAVDALSICMTINGWEMMIPLAFFAGTG
*******************************LTRTIWVESKKLWYIVGPAIFSRLASYSMLVITQAFAGHLGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYYMLGVYMQRSWIVLFVCCVLLLPLYLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAWVSLVALLVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSCGGCPLTWTGFTLEAFSGLWQFVKLSAASGVMLCLENWYYRILISMTGNLQNAEIAVDALSICMTINGWEMMIPLAFFA***
*********************************RTIWVESKKLWYIVGPAIFSRLASYSMLVITQAFAGHLGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYYMLGVYMQRSWIVLFVCCVLLLPLYLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAWVSLVALLVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSCGGCPLTWTGFTLEAFSGLWQFVKLSAASGVMLCLENWYYRILISMTGNLQNAEIAVDALSICMTINGWEMMIPLAFFAGTG
MPSNGALEDTKVPLLDDLAST*********NLTRTIWVESKKLWYIVGPAIFSRLASYSMLVITQAFAGHLGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYYMLGVYMQRSWIVLFVCCVLLLPLYLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAWVSLVALLVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSCGGCPLTWTGFTLEAFSGLWQFVKLSAASGVMLCLENWYYRILISMTGNLQNAEIAVDALSICMTINGWEMMIPLAFFAGTG
*****************************KNLTRTIWVESKKLWYIVGPAIFSRLASYSMLVITQAFAGHLGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYYMLGVYMQRSWIVLFVCCVLLLPLYLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAWVSLVALLVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSCGGCPLTWTGFTLEAFSGLWQFVKLSAASGVMLCLENWYYRILISMTGNLQNAEIAVDALSICMTINGWEMMIPLAFFAG**
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MPSNGALEDTKVPLLDDLASTVPSEDDSDKNLTRTIWVESKKLWYIVGPAIFSRLASYSMLVITQAFAGHLGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYYMLGVYMQRSWIVLFVCCVLLLPLYLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAWVSLVALLVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSCGGCPLTWTGFTLEAFSGLWQFVKLSAASGVMLCLENWYYRILISMTGNLQNAEIAVDALSICMTINGWEMMIPLAFFAGTG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query323 2.2.26 [Sep-21-2011]
Q9LYT3 507 Protein TRANSPARENT TESTA no no 0.987 0.629 0.380 1e-56
Q9LUH2 477 MATE efflux family protei no no 0.934 0.633 0.329 3e-37
Q9LUH3 469 MATE efflux family protei no no 0.953 0.656 0.324 4e-36
Q9SIA4 476 MATE efflux family protei no no 0.928 0.630 0.338 7e-36
Q9SIA3 476 MATE efflux family protei no no 0.879 0.596 0.326 5e-35
Q8GXM8 476 MATE efflux family protei no no 0.860 0.584 0.322 1e-34
Q9SIA5 476 MATE efflux family protei no no 0.873 0.592 0.328 1e-34
Q9SIA1 477 MATE efflux family protei no no 0.873 0.591 0.303 1e-28
Q8RWF5 483 MATE efflux family protei no no 0.873 0.583 0.307 6e-28
A1L1P9 590 Multidrug and toxin extru yes no 0.938 0.513 0.291 9e-24
>sp|Q9LYT3|TT12_ARATH Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1 Back     alignment and function desciption
 Score =  220 bits (560), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 123/323 (38%), Positives = 190/323 (58%), Gaps = 4/323 (1%)

Query: 1   MPSNGALEDTKVPLLDDLASTVPSEDDSDKNLTRTIWVESKKLWYIVGPAIFSRLASYSM 60
           + S+  + +   P +++      S       L   +W ESK LW + G +I   + +Y +
Sbjct: 14  LHSDSQITERSSPEIEEFLRRRGSTVTPRWWLKLAVW-ESKLLWTLSGASIVVSVLNYML 72

Query: 61  LVITQAFAGHLGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYYMLGVY 120
             +T  F GHLG ++LA  SIA   I G  +G++LGMASA++T+CGQA+GA++Y  +G+ 
Sbjct: 73  SFVTVMFTGHLGSLQLAGASIATVGIQGLAYGIMLGMASAVQTVCGQAYGARQYSSMGII 132

Query: 121 MQRSWIVLFVCCVLLLPLYLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQ 180
            QR+ ++     V L  LY ++ P+LK +GQ   +A    + +  MIP  ++FA   P+Q
Sbjct: 133 CQRAMVLHLAAAVFLTFLYWYSGPILKTMGQSVAIAHEGQIFARGMIPQIYAFALACPMQ 192

Query: 181 RFLQSQLKNMVIAWVSLVALLVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVF--GLFG 238
           RFLQ+Q     +A++SL   L+H  ++WL  N +  G++G A  L+FSWW+LV   G++ 
Sbjct: 193 RFLQAQNIVNPLAYMSLGVFLLHTLLTWLVTNVLDFGLLGAALILSFSWWLLVAVNGMYI 252

Query: 239 YVSCGGCPLTWTGFTLEAFSGLWQFVKLSAASGVMLCLENWYYRILISMTGNLQNAEIAV 298
            +S   C  TWTGF+  AF G+W + KL+ AS VMLCLE WY + L+ ++G L N  I++
Sbjct: 253 LMS-PNCKETWTGFSTRAFRGIWPYFKLTVASAVMLCLEIWYNQGLVIISGLLSNPTISL 311

Query: 299 DALSICMTINGWEMMIPLAFFAG 321
           DA+SICM    W+M   L   A 
Sbjct: 312 DAISICMYYLNWDMQFMLGLSAA 334
May be involved in vacuolar transport of flavonoids.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9LUH2|ALF5_ARATH MATE efflux family protein ALF5 OS=Arabidopsis thaliana GN=ALF5 PE=2 SV=1 Back     alignment and function description
>sp|Q9LUH3|LAL5_ARATH MATE efflux family protein LAL5 OS=Arabidopsis thaliana GN=LAL5 PE=2 SV=1 Back     alignment and function description
>sp|Q9SIA4|MATE5_ARATH MATE efflux family protein 5 OS=Arabidopsis thaliana GN=DTXL1 PE=3 SV=1 Back     alignment and function description
>sp|Q9SIA3|MATE6_ARATH MATE efflux family protein 6 OS=Arabidopsis thaliana GN=DTXL2 PE=3 SV=2 Back     alignment and function description
>sp|Q8GXM8|MATE7_ARATH MATE efflux family protein 7 OS=Arabidopsis thaliana GN=DTXL3 PE=2 SV=1 Back     alignment and function description
>sp|Q9SIA5|DTX1_ARATH MATE efflux family protein DTX1 OS=Arabidopsis thaliana GN=DTX1 PE=2 SV=1 Back     alignment and function description
>sp|Q9SIA1|MATE8_ARATH MATE efflux family protein 8 OS=Arabidopsis thaliana GN=DTXL4 PE=3 SV=2 Back     alignment and function description
>sp|Q8RWF5|MATE9_ARATH MATE efflux family protein 9 OS=Arabidopsis thaliana GN=DTXL5 PE=2 SV=1 Back     alignment and function description
>sp|A1L1P9|S47A1_DANRE Multidrug and toxin extrusion protein 1 OS=Danio rerio GN=slc47a1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query323
224097194 488 predicted protein [Populus trichocarpa] 0.993 0.657 0.825 1e-152
356497726 491 PREDICTED: protein TRANSPARENT TESTA 12- 0.993 0.653 0.769 1e-144
357485623 490 Protein TRANSPARENT TESTA [Medicago trun 0.984 0.648 0.785 1e-143
255586693 482 multidrug resistance pump, putative [Ric 0.984 0.659 0.814 1e-141
302142014 521 unnamed protein product [Vitis vinifera] 0.993 0.616 0.749 1e-137
359492469 490 PREDICTED: protein TRANSPARENT TESTA 12- 0.993 0.655 0.749 1e-137
449438809 484 PREDICTED: protein TRANSPARENT TESTA 12- 0.981 0.654 0.731 1e-137
255586695 507 multidrug resistance pump, putative [Ric 0.975 0.621 0.810 1e-136
356508053 503 PREDICTED: protein TRANSPARENT TESTA 12 0.987 0.634 0.695 1e-131
224067013 492 predicted protein [Populus trichocarpa] 0.972 0.638 0.719 1e-130
>gi|224097194|ref|XP_002310871.1| predicted protein [Populus trichocarpa] gi|222853774|gb|EEE91321.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  545 bits (1403), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 269/326 (82%), Positives = 292/326 (89%), Gaps = 5/326 (1%)

Query: 1   MPSNGALED---TKVPLLDDLASTVPSEDDSDKNLTRTIWVESKKLWYIVGPAIFSRLAS 57
           M SNGA+ D    KVPLL++   T   +D   ++L   + VESKKLW+IVGPAIFSRL S
Sbjct: 1   MSSNGAVLDYLEAKVPLLEE--KTKRDDDIVVQDLACRVGVESKKLWHIVGPAIFSRLTS 58

Query: 58  YSMLVITQAFAGHLGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYYML 117
           YSMLVITQAFAGHLGD+ELA ISIANNVIVGFDFGLLLGMASALETLCGQAFGAK+YYML
Sbjct: 59  YSMLVITQAFAGHLGDLELAGISIANNVIVGFDFGLLLGMASALETLCGQAFGAKKYYML 118

Query: 118 GVYMQRSWIVLFVCCVLLLPLYLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQF 177
           GVYMQRSWIVLF+CC+LLLPLYLFASPVLKLLGQP+D+AELSG  ++WMIPLHFSFAFQF
Sbjct: 119 GVYMQRSWIVLFLCCILLLPLYLFASPVLKLLGQPNDIAELSGKAAVWMIPLHFSFAFQF 178

Query: 178 PLQRFLQSQLKNMVIAWVSLVALLVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLF 237
           PLQRFLQSQLKNMVIAWVS VAL+VHIFVSWL V ++QLGV GTA TLNFSWW+LVFGL 
Sbjct: 179 PLQRFLQSQLKNMVIAWVSFVALVVHIFVSWLLVYKLQLGVAGTAMTLNFSWWVLVFGLL 238

Query: 238 GYVSCGGCPLTWTGFTLEAFSGLWQFVKLSAASGVMLCLENWYYRILISMTGNLQNAEIA 297
           GY  CGGCPLTWTGF+ EAFSGLW+F KLSAASGVMLCLENWYYRILI MTGNL+NAEIA
Sbjct: 239 GYTICGGCPLTWTGFSTEAFSGLWEFTKLSAASGVMLCLENWYYRILILMTGNLKNAEIA 298

Query: 298 VDALSICMTINGWEMMIPLAFFAGTG 323
           VDALSICMTINGWEMMIPLAFFAGTG
Sbjct: 299 VDALSICMTINGWEMMIPLAFFAGTG 324

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356497726|ref|XP_003517710.1| PREDICTED: protein TRANSPARENT TESTA 12-like [Glycine max] Back     alignment and taxonomy information
>gi|357485623|ref|XP_003613099.1| Protein TRANSPARENT TESTA [Medicago truncatula] gi|355514434|gb|AES96057.1| Protein TRANSPARENT TESTA [Medicago truncatula] Back     alignment and taxonomy information
>gi|255586693|ref|XP_002533972.1| multidrug resistance pump, putative [Ricinus communis] gi|223526044|gb|EEF28410.1| multidrug resistance pump, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|302142014|emb|CBI19217.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359492469|ref|XP_002285728.2| PREDICTED: protein TRANSPARENT TESTA 12-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|449438809|ref|XP_004137180.1| PREDICTED: protein TRANSPARENT TESTA 12-like [Cucumis sativus] gi|449476480|ref|XP_004154748.1| PREDICTED: protein TRANSPARENT TESTA 12-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|255586695|ref|XP_002533973.1| multidrug resistance pump, putative [Ricinus communis] gi|223526045|gb|EEF28411.1| multidrug resistance pump, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356508053|ref|XP_003522776.1| PREDICTED: protein TRANSPARENT TESTA 12 [Glycine max] Back     alignment and taxonomy information
>gi|224067013|ref|XP_002302326.1| predicted protein [Populus trichocarpa] gi|222844052|gb|EEE81599.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query323
TAIR|locus:2168210 486 AT5G65380 "AT5G65380" [Arabido 0.944 0.627 0.705 8.2e-115
TAIR|locus:2172477 491 AT5G44050 "AT5G44050" [Arabido 0.978 0.643 0.631 6.1e-110
TAIR|locus:2142544 489 AT5G10420 [Arabidopsis thalian 0.969 0.640 0.628 2.5e-106
TAIR|locus:2206960 494 AT1G33110 "AT1G33110" [Arabido 0.916 0.599 0.472 4.5e-75
TAIR|locus:2015368 484 AT1G47530 "AT1G47530" [Arabido 0.956 0.638 0.455 8.4e-74
TAIR|locus:2010401 522 RSH2 "AT1G12950" [Arabidopsis 0.879 0.544 0.489 2.2e-73
TAIR|locus:2144421 498 AT5G38030 "AT5G38030" [Arabido 0.876 0.568 0.498 2.8e-73
TAIR|locus:2037980 494 AT1G33090 "AT1G33090" [Arabido 0.916 0.599 0.456 2.5e-72
TAIR|locus:2088822 500 AT3G26590 "AT3G26590" [Arabido 0.863 0.558 0.498 2.5e-72
TAIR|locus:2037960 494 AT1G33080 "AT1G33080" [Arabido 0.916 0.599 0.469 6.7e-72
TAIR|locus:2168210 AT5G65380 "AT5G65380" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1132 (403.5 bits), Expect = 8.2e-115, P = 8.2e-115
 Identities = 216/306 (70%), Positives = 249/306 (81%)

Query:    18 LASTVPSEDDSDKNLTRTIWVESKKLWYIVGPAIFSRLASYSMLVITQAFAGHLGDIELA 77
             L S   +E+D +  L   I VE+KKLW IVGPAIFSR+ +YSMLVITQAFAGHLGD+ELA
Sbjct:    17 LKSPHTAEEDGE-GLKDRILVETKKLWQIVGPAIFSRVTTYSMLVITQAFAGHLGDLELA 75

Query:    78 AISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYYMLGVYMQRSWIXXXXXXXXXXX 137
             AISI NNV VGF+FGLLLGMASALETLCGQAFGAK+Y+MLGVYMQRSWI           
Sbjct:    76 AISIVNNVTVGFNFGLLLGMASALETLCGQAFGAKKYHMLGVYMQRSWIVLFFCCVLLLP 135

Query:   138 XXXXASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAWVSL 197
                  +PVLK LGQPDD+AELSG+V+IW+IPLHF+F   FPLQRFLQ QLKN V A+ + 
Sbjct:   136 TYIFTTPVLKFLGQPDDIAELSGVVAIWVIPLHFAFTLSFPLQRFLQCQLKNRVTAYAAA 195

Query:   198 VALLVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSCGGCPLTWTGFTLEAF 257
             VAL+VHI V WLFV+ ++LGV+GT AT++ SWW+ V  L  Y +CGGCPLTWTG + EA 
Sbjct:   196 VALVVHILVCWLFVDGLKLGVVGTVATISISWWVNVLILLVYSTCGGCPLTWTGLSSEAL 255

Query:   258 SGLWQFVKLSAASGVMLCLENWYYRILISMTGNLQNAEIAVDALSICMTINGWEMMIPLA 317
             +GLW+F+KLSA+SGVMLCLENWYYRILI MTGNLQNA IAVD+LSICM INGWEMMIPLA
Sbjct:   256 TGLWEFLKLSASSGVMLCLENWYYRILIIMTGNLQNARIAVDSLSICMAINGWEMMIPLA 315

Query:   318 FFAGTG 323
             FFAGTG
Sbjct:   316 FFAGTG 321
GO:0005215 "transporter activity" evidence=ISS
GO:0005886 "plasma membrane" evidence=ISM
GO:0006855 "drug transmembrane transport" evidence=IEA
GO:0009835 "fruit ripening" evidence=ISS
GO:0015238 "drug transmembrane transporter activity" evidence=IEA
GO:0015297 "antiporter activity" evidence=IEA;ISS
GO:0016020 "membrane" evidence=IEA;ISS
GO:0055085 "transmembrane transport" evidence=IEA
TAIR|locus:2172477 AT5G44050 "AT5G44050" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2142544 AT5G10420 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2206960 AT1G33110 "AT1G33110" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2015368 AT1G47530 "AT1G47530" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2010401 RSH2 "AT1G12950" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2144421 AT5G38030 "AT5G38030" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2037980 AT1G33090 "AT1G33090" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2088822 AT3G26590 "AT3G26590" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2037960 AT1G33080 "AT1G33080" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
grail3.0019033701
hypothetical protein (488 aa)
(Populus trichocarpa)
Predicted Functional Partners:
gw1.V.3697.1
hypothetical protein (426 aa)
  •     0.461
estExt_Genewise1_v1.C_LG_IX1583
hypothetical protein (460 aa)
  •     0.445

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query323
cd13132 436 cd13132, MATE_eukaryotic, Eukaryotic members of th 1e-101
TIGR00797342 TIGR00797, matE, putative efflux protein, MATE fam 1e-32
pfam01554161 pfam01554, MatE, MatE 2e-28
COG0534 455 COG0534, NorM, Na+-driven multidrug efflux pump [D 2e-23
cd13131 435 cd13131, MATE_NorM_like, Subfamily of the multidru 6e-20
COG0534455 COG0534, NorM, Na+-driven multidrug efflux pump [D 4e-16
cd12082 420 cd12082, MATE_like, Multidrug and toxic compound e 5e-14
cd13133 438 cd13133, MATE_like_7, Uncharacterized subfamily of 3e-12
cd13137 432 cd13137, MATE_NorM_like, Subfamily of the multidru 2e-11
cd12082420 cd12082, MATE_like, Multidrug and toxic compound e 1e-10
cd13138 431 cd13138, MATE_yoeA_like, Subfamily of the multidru 1e-08
PRK01766 456 PRK01766, PRK01766, multidrug efflux protein; Revi 4e-08
cd13138431 cd13138, MATE_yoeA_like, Subfamily of the multidru 3e-07
cd13134 438 cd13134, MATE_like_8, Uncharacterized subfamily of 1e-06
cd13136 424 cd13136, MATE_DinF_like, DinF and similar proteins 1e-06
cd13136424 cd13136, MATE_DinF_like, DinF and similar proteins 4e-06
cd13143 426 cd13143, MATE_MepA_like, Subfamily of the multidru 4e-06
cd13143426 cd13143, MATE_MepA_like, Subfamily of the multidru 6e-06
TIGR00797342 TIGR00797, matE, putative efflux protein, MATE fam 9e-06
cd13137432 cd13137, MATE_NorM_like, Subfamily of the multidru 9e-06
cd13134438 cd13134, MATE_like_8, Uncharacterized subfamily of 2e-05
cd13145440 cd13145, MATE_like_5, Uncharacterized subfamily of 3e-04
cd13133438 cd13133, MATE_like_7, Uncharacterized subfamily of 4e-04
cd13131435 cd13131, MATE_NorM_like, Subfamily of the multidru 0.001
cd13149434 cd13149, MATE_like_2, Uncharacterized subfamily of 0.002
cd13146433 cd13146, MATE_like_6, Uncharacterized subfamily of 0.003
>gnl|CDD|240537 cd13132, MATE_eukaryotic, Eukaryotic members of the multidrug and toxic compound extrusion (MATE) family Back     alignment and domain information 
 Score =  305 bits (783), Expect = e-101
 Identities = 122/286 (42%), Positives = 180/286 (62%), Gaps = 2/286 (0%)

Query: 39  ESKKLWYIVGPAIFSRLASYSMLVITQAFAGHLGDIELAAISIANNVIVGFDFGLLLGMA 98
           E+KKL  +  P + + L  YS+ V++  F GHLG +ELAA S+A++      F +LLG+A
Sbjct: 1   EAKKLLRLAAPLVLTSLLQYSLSVVSVVFVGHLGKLELAAASLASSFANVTGFSILLGLA 60

Query: 99  SALETLCGQAFGAKRYYMLGVYMQRSWIVLFVCCVLLLPLYLFASPVLKLLGQPDDVAEL 158
           SAL+TLCGQAFGAK Y ++GVY+QR+ ++L +CCV +  L+L   P+L LLGQ  ++A L
Sbjct: 61  SALDTLCGQAFGAKNYKLVGVYLQRALVILLLCCVPISLLWLNTEPILLLLGQDPEIARL 120

Query: 159 SGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAWVSLVALLVHIFVSWLFVNRMQLGV 218
           +G    W+IP  F++A   PL+R+LQ+Q   + + ++SLVALL++I +++L V  + LG 
Sbjct: 121 AGEYLRWLIPGLFAYALFEPLKRYLQAQGIVLPLVYISLVALLLNILLNYLLVFVLGLGF 180

Query: 219 IGTAATLNFSWWILVFGLFGYVSC-GGCPLTWTGFTLEAFSGLWQFVKLSAASGVMLCLE 277
           IG A   + S+W++V  L  Y+    G   TW GF+ EAF G   F+KL+  S +MLCLE
Sbjct: 181 IGAALATSISYWLIVVLLLLYIFFSKGHKATWGGFSREAFRGWGPFLKLAIPSALMLCLE 240

Query: 278 NWYYRILISMTGNLQNAEIAVDALSICMTINGWEMMIPLAFFAGTG 323
            W + IL+ + G L    +A+ A SIC+T      MIPL       
Sbjct: 241 WWAFEILVLLAGLLP-GTVALAAQSICLTTTSLLYMIPLGISIAAS 285

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. This subfamily, which is restricted to eukaryotes, contains vertebrate solute transporters responsible for secretion of cationic drugs across the brush border membranes, yeast proteins located in the vacuole membrane, and plant proteins involved in disease resistance and iron homeostatis under osmotic stress. Length = 436
>gnl|CDD|233130 TIGR00797, matE, putative efflux protein, MATE family Back     alignment and domain information
>gnl|CDD|190033 pfam01554, MatE, MatE Back     alignment and domain information
>gnl|CDD|223608 COG0534, NorM, Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>gnl|CDD|240536 cd13131, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Vibrio cholerae NorM Back     alignment and domain information
>gnl|CDD|223608 COG0534, NorM, Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>gnl|CDD|240527 cd12082, MATE_like, Multidrug and toxic compound extrusion family and similar proteins Back     alignment and domain information
>gnl|CDD|240538 cd13133, MATE_like_7, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240542 cd13137, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Thermotoga marina NorM Back     alignment and domain information
>gnl|CDD|240527 cd12082, MATE_like, Multidrug and toxic compound extrusion family and similar proteins Back     alignment and domain information
>gnl|CDD|240543 cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA Back     alignment and domain information
>gnl|CDD|234981 PRK01766, PRK01766, multidrug efflux protein; Reviewed Back     alignment and domain information
>gnl|CDD|240543 cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA Back     alignment and domain information
>gnl|CDD|240539 cd13134, MATE_like_8, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240541 cd13136, MATE_DinF_like, DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins Back     alignment and domain information
>gnl|CDD|240541 cd13136, MATE_DinF_like, DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins Back     alignment and domain information
>gnl|CDD|240548 cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA Back     alignment and domain information
>gnl|CDD|240548 cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA Back     alignment and domain information
>gnl|CDD|233130 TIGR00797, matE, putative efflux protein, MATE family Back     alignment and domain information
>gnl|CDD|240542 cd13137, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Thermotoga marina NorM Back     alignment and domain information
>gnl|CDD|240539 cd13134, MATE_like_8, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240550 cd13145, MATE_like_5, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240538 cd13133, MATE_like_7, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240536 cd13131, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Vibrio cholerae NorM Back     alignment and domain information
>gnl|CDD|240554 cd13149, MATE_like_2, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240551 cd13146, MATE_like_6, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 323
COG0534 455 NorM Na+-driven multidrug efflux pump [Defense mec 100.0
PRK10367 441 DNA-damage-inducible SOS response protein; Provisi 100.0
PRK00187 464 multidrug efflux protein NorA; Provisional 100.0
PRK10189 478 MATE family multidrug exporter; Provisional 100.0
PRK09575 453 vmrA multidrug efflux pump VmrA; Reviewed 100.0
PRK01766 456 multidrug efflux protein; Reviewed 100.0
TIGR00797342 matE putative efflux protein, MATE family. The MAT 99.97
KOG1347 473 consensus Uncharacterized membrane protein, predic 99.97
PRK00187464 multidrug efflux protein NorA; Provisional 99.94
PRK01766456 multidrug efflux protein; Reviewed 99.93
PRK10189478 MATE family multidrug exporter; Provisional 99.93
COG0534455 NorM Na+-driven multidrug efflux pump [Defense mec 99.93
PRK09575453 vmrA multidrug efflux pump VmrA; Reviewed 99.92
TIGR01695502 mviN integral membrane protein MviN. This model re 99.9
TIGR01695 502 mviN integral membrane protein MviN. This model re 99.9
PRK15099 416 O-antigen translocase; Provisional 99.9
TIGR02900 488 spore_V_B stage V sporulation protein B. SpoVB is 99.89
PRK10367441 DNA-damage-inducible SOS response protein; Provisi 99.86
PF03023451 MVIN: MviN-like protein; InterPro: IPR004268 This 99.86
TIGR02900488 spore_V_B stage V sporulation protein B. SpoVB is 99.84
COG0728518 MviN Uncharacterized membrane protein, putative vi 99.83
PF01554162 MatE: MatE; InterPro: IPR002528 Characterised memb 99.81
PRK15099416 O-antigen translocase; Provisional 99.8
PRK10459492 colanic acid exporter; Provisional 99.79
PF03023 451 MVIN: MviN-like protein; InterPro: IPR004268 This 99.74
COG2244480 RfbX Membrane protein involved in the export of O- 99.72
PF01943273 Polysacc_synt: Polysaccharide biosynthesis protein 99.66
COG0728 518 MviN Uncharacterized membrane protein, putative vi 99.64
PRK10459 492 colanic acid exporter; Provisional 99.57
TIGR00797342 matE putative efflux protein, MATE family. The MAT 99.52
PF13440251 Polysacc_synt_3: Polysaccharide biosynthesis prote 99.47
COG2244 480 RfbX Membrane protein involved in the export of O- 99.39
KOG1347473 consensus Uncharacterized membrane protein, predic 99.26
PF14667146 Polysacc_synt_C: Polysaccharide biosynthesis C-ter 98.93
PF04506549 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric 98.88
PF07260345 ANKH: Progressive ankylosis protein (ANKH); InterP 98.87
KOG2864530 consensus Nuclear division RFT1 protein [Cell cycl 98.47
PF01943273 Polysacc_synt: Polysaccharide biosynthesis protein 97.81
PF13440251 Polysacc_synt_3: Polysaccharide biosynthesis prote 97.05
COG4267 467 Predicted membrane protein [Function unknown] 95.21
PF04506 549 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric 94.28
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=3e-40  Score=303.51  Aligned_cols=285  Identities=21%  Similarity=0.267  Sum_probs=265.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhCCCchh
Q 020680           36 IWVESKKLWYIVGPAIFSRLASYSMLVITQAFAGHLGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYY  115 (323)
Q Consensus        36 ~~~~~~~il~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~s~~~g~~~~~  115 (323)
                      .+++.|+++++++|++++++.+.+++.+|+.++||++++++|+.++++++..+ .+.+..+++.+..+++||++|+||++
T Consensus        12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~-~~~~~~gl~~g~~~liaq~~Ga~~~~   90 (455)
T COG0534          12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFL-IIAIFIGLGTGTTVLVAQAIGAGDRK   90 (455)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH-HHHHHHHHHHhHHHHHHHHHcCCchH
Confidence            57789999999999999999999999999999999999999999999999886 57899999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHH-HHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCchhHHHH
Q 020680          116 MLGVYMQRSWIVLFVCCVL-LLPLYLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAW  194 (323)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~~~  194 (323)
                      ++++..++++.++++++++ ..+.+++.++++.+++.++|+.+.+.+|+++..++.|+..+..++.+.+|+.||+|.+++
T Consensus        91 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~  170 (455)
T COG0534          91 KAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMY  170 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHH
Confidence            9999999999999999955 677888999999999998999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhh-cc-cCcchhHHHHHHHHHHHHHHHHHHHHhccc--cccccCCcHHHHhcHHHHHHHHHHH
Q 020680          195 VSLVALLVHIFVSWLFVNR-MQ-LGVIGTAATLNFSWWILVFGLFGYVSCGGC--PLTWTGFTLEAFSGLWQFVKLSAAS  270 (323)
Q Consensus       195 ~~~~~~~~~i~l~~~li~~-~~-~Gi~G~a~a~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~p~  270 (323)
                      .+++++++|+++||+|+++ ++ +|+.|+++||++++++.+++..++++++++  .....+..+.+++.+|+++++|.|.
T Consensus       171 ~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lG~p~  250 (455)
T COG0534         171 ILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRLGLPI  250 (455)
T ss_pred             HHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhccCCCHHHHHHHHHhcccH
Confidence            9999999999999999998 57 999999999999999999999999888753  3333334456678999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhccC
Q 020680          271 GVMLCLENWYYRILISMTGNLQNAEIAVDALSICMTINGWEMMIPLAFFAGTG  323 (323)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~lg~~~~~~aa~~i~~~~~~~~~~~~~~~~~a~s  323 (323)
                      ++++..+...+.+.+.+++++|++  ++|||++..++.++.++++.|+++|++
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~G~~--~lAa~~i~~~i~~~~~~~~~gi~~a~~  301 (455)
T COG0534         251 FLESLSESLGFLLLTLFVARLGTV--ALAAYGIALRIASFIFMPPFGIAQAVT  301 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcChH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999964  678999999999999999999999864

>PRK10367 DNA-damage-inducible SOS response protein; Provisional Back     alignment and domain information
>PRK00187 multidrug efflux protein NorA; Provisional Back     alignment and domain information
>PRK10189 MATE family multidrug exporter; Provisional Back     alignment and domain information
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed Back     alignment and domain information
>PRK01766 multidrug efflux protein; Reviewed Back     alignment and domain information
>TIGR00797 matE putative efflux protein, MATE family Back     alignment and domain information
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only] Back     alignment and domain information
>PRK00187 multidrug efflux protein NorA; Provisional Back     alignment and domain information
>PRK01766 multidrug efflux protein; Reviewed Back     alignment and domain information
>PRK10189 MATE family multidrug exporter; Provisional Back     alignment and domain information
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed Back     alignment and domain information
>TIGR01695 mviN integral membrane protein MviN Back     alignment and domain information
>TIGR01695 mviN integral membrane protein MviN Back     alignment and domain information
>PRK15099 O-antigen translocase; Provisional Back     alignment and domain information
>TIGR02900 spore_V_B stage V sporulation protein B Back     alignment and domain information
>PRK10367 DNA-damage-inducible SOS response protein; Provisional Back     alignment and domain information
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions Back     alignment and domain information
>TIGR02900 spore_V_B stage V sporulation protein B Back     alignment and domain information
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only] Back     alignment and domain information
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters Back     alignment and domain information
>PRK15099 O-antigen translocase; Provisional Back     alignment and domain information
>PRK10459 colanic acid exporter; Provisional Back     alignment and domain information
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions Back     alignment and domain information
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only] Back     alignment and domain information
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide Back     alignment and domain information
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only] Back     alignment and domain information
>PRK10459 colanic acid exporter; Provisional Back     alignment and domain information
>TIGR00797 matE putative efflux protein, MATE family Back     alignment and domain information
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein Back     alignment and domain information
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only] Back     alignment and domain information
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only] Back     alignment and domain information
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain Back     alignment and domain information
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol [] Back     alignment and domain information
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences Back     alignment and domain information
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide Back     alignment and domain information
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein Back     alignment and domain information
>COG4267 Predicted membrane protein [Function unknown] Back     alignment and domain information
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol [] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query323
3mkt_A 460 Multi antimicrobial extrusion protein (Na(+)/drug 4e-40
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 8e-07
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Length = 460 Back     alignment and structure
 Score =  145 bits (367), Expect = 4e-40
 Identities = 50/296 (16%), Positives = 114/296 (38%), Gaps = 10/296 (3%)

Query: 30  KNLTRTIWVESKKLWYIVGPAIFSRLASYSMLVITQAFAGHLGDIELAAISIANNVIVGF 89
           +N       E+  L  +  P + + +A   M  +    AG +  I++AA+SIA ++ +  
Sbjct: 1   ENSVHRYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPS 60

Query: 90  DFGLLLGMASALETLCGQAFGAKRYYMLGVYMQRSWIVLFVCCVLLLPLYLFASPVLKLL 149
                +G+  AL  +  Q  GA R + +   + +  I+  +  V ++ +      +++ +
Sbjct: 61  -ILFGVGLLMALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFM 119

Query: 150 GQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAWVSLVALLVHIFVSWL 209
              + +A  +      +I    ++     L+ F            +  + LL++I ++W+
Sbjct: 120 DVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWI 179

Query: 210 FVNRM----QLGVIGTAATLNFSWWILVFGLFGYVSCGG---CPLTWTGFTLEAFSGLWQ 262
           FV       +LG +G        +WI++  L  Y+           +  F       L +
Sbjct: 180 FVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIR 239

Query: 263 FVKLSAASGVMLCLENWYYRILISMTGNLQNAEIAVDALSICMTINGWEMMIPLAF 318
             +L       L  E   + ++  +   L +  +A  A  + +  +    M P++ 
Sbjct: 240 LFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVA--AHQVALNFSSLVFMFPMSI 293
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Length = 460 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query323
3mkt_A 460 Multi antimicrobial extrusion protein (Na(+)/drug 100.0
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 99.92
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Back     alignment and structure
Probab=100.00  E-value=4.2e-32  Score=250.44  Aligned_cols=287  Identities=17%  Similarity=0.282  Sum_probs=257.6

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhCCC
Q 020680           33 TRTIWVESKKLWYIVGPAIFSRLASYSMLVITQAFAGHLGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAK  112 (323)
Q Consensus        33 ~~~~~~~~~~il~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~s~~~g~~  112 (323)
                      ....+++.|++++.++|.+++++...+.+.+|+.+++++|++++++++.+.++..+ ...+..+++.+..+.+++++|++
T Consensus         4 ~~~~~~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~~~~~~~~~~~i~~~-~~~~~~g~~~~~~~~is~~~g~~   82 (460)
T 3mkt_A            4 VHRYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLP-SILFGVGLLMALVPVVAQLNGAG   82 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTSSHHHHHHHHHHH-HHHHHHHHHHHHGGGCTTTTSSS
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCC
Confidence            34567889999999999999999999999999999999999999999999999775 46778999999999999999999


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCchhHH
Q 020680          113 RYYMLGVYMQRSWIVLFVCCVLLLPLYLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVI  192 (323)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~  192 (323)
                      |+|+.++.+++++.+..+++++..+++.+.++++.+++.+++..+.+..|++++.++.++..+..+..+++|+.||++.+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~  162 (460)
T 3mkt_A           83 RQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPA  162 (460)
T ss_dssp             STTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTT
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHH
Confidence            99999999999999999999776666778899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhh-c---ccCcchhHHHHHHHHHHHHHHHHHHHHhcccccc---ccCCcHHHHhcHHHHHH
Q 020680          193 AWVSLVALLVHIFVSWLFVNR-M---QLGVIGTAATLNFSWWILVFGLFGYVSCGGCPLT---WTGFTLEAFSGLWQFVK  265 (323)
Q Consensus       193 ~~~~~~~~~~~i~l~~~li~~-~---~~Gi~G~a~a~~i~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~  265 (323)
                      ++.++++.++|+++++++++. +   ++|+.|+++++.+++++..++..+++++++...+   ++++.+.+++.+|++++
T Consensus       163 ~~~~~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  242 (460)
T 3mkt_A          163 MVIGFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFR  242 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSCCCCSSTTSSTTTSHH
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhhcccccCHHHHHHHHH
Confidence            999999999999999999975 3   6999999999999999999988888776632221   12223445678999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 020680          266 LSAASGVMLCLENWYYRILISMTGNLQNAEIAVDALSICMTINGWEMMIPLAFFAGT  322 (323)
Q Consensus       266 ~~~p~~~~~~~~~~~~~~~~~~~~~lg~~~~~~aa~~i~~~~~~~~~~~~~~~~~a~  322 (323)
                      .+.|..+....+.+.+.+.+.+++++|++  ++++|+++.++.++..+++.+++++.
T Consensus       243 ~~~p~~~~~~~~~~~~~~~~~~~~~~g~~--~va~~~i~~~i~~~~~~~~~~~~~a~  297 (460)
T 3mkt_A          243 LGFPVAAALFFEVTLFAVVALLVAPLGST--VVAAHQVALNFSSLVFMFPMSIGAAV  297 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCTTSSH--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHcChH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999864  67799999999999999999998764
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 323
d1itwa_ 740 c.77.1.2 (A:) Monomeric isocitrate dehydrogenase { 0.004
>d1itwa_ c.77.1.2 (A:) Monomeric isocitrate dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Length = 740 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Isocitrate/Isopropylmalate dehydrogenase-like
superfamily: Isocitrate/Isopropylmalate dehydrogenase-like
family: Monomeric isocitrate dehydrogenase
domain: Monomeric isocitrate dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 36.7 bits (85), Expect = 0.004
 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)

Query: 55 LASYSMLVITQAFAGHLG-DIELAAISIANNVIVGF 89
          LA+YS+L I +AF G  G  +E   IS+A  +I  F
Sbjct: 16 LATYSLLPIIKAFTGSSGIAVETRDISLAGRLIATF 51

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00