Citrus Sinensis ID: 020804

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-
Protein Sequence
MDITPHTGISFSASDAAAINFSLTTHKVHFDSTLVGDYKLLNFTWFEPPAPSQAPLASSPPMKAPTHRASPSLPSSTSNKGKHSNLILLFGIGTGLLITAIISVLIICSCAFRRRNSKASPKETESGKWSCESDSEIRVLAEFKPGLITLDGHADDWEDIDGSEFSLLPALDPHAEHEYKGGKMNVKALHDGHDVYFLLQVDGEYVYSKGENTRCPSIALMFQIGEDATYHNMGGCKEGIGSCTSKTCKGHEVDIMHFSIGSAIPGRLYGGNPVDNSEGNGGDRFGHLVDVYAWTPHCRYLDGMGPSGIKLNHFRSFISHK
Secondary Structure (PSIPRED)
ccccccccccccHHHHHHHcccccccEEEEEccEEccEEEEEEEEcccccccccccccccccccccccccccccccccccccccccEEEEEHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccEEEEEEEEccEEEEccccccccccccccccccccccccccccccccEEEEEEEEccccEEEEEEEcccEEEEcccccccccEEEEEEEccccEEEEccccccccccccccccccEEEEEEEEEEccccccccccccccccccccccccccccEEEEEcccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccEEEcHHHHHHHHHHHHccEEEEcccEEccEEEEEEEccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccEEEEEEEEcccEEEEccccccHHccccccccccccccccccccccccEEEEEEEEcccEEEEEEEEcccEEEEccccccccEEEEEEEcccccEEEccccccccccccccccccccEEEEEEEEEcccccccEcccccccccccccccccccccEEEccccccccccccccccccHcccHHEEccc
Coil and Loop (DISEMBL)
mditphtgisfsasdAAAINFSLtthkvhfdstlvgdykllnftwfeppapsqaplassppmkapthraspslpsstsnkgkhsNLILLFGIGTGLLITAIISVLIICSCafrrrnskaspketesgkwscesdsEIRVLAEfkpglitldghaddwedidgsefsllpaldphaeheykggkmnvkalhdghDVYFLLQVdgeyvyskgentrcpsIALMFQIgedatyhnmggckegigsctsktckghevdimhfsigsaipgrlyggnpvdnsegnggdrfgHLVDVYawtphcryldgmgpsgiklnhfrsfishk
Flexible Loop (DISEMBL)
mditphtgisfsasDAAAINFSLTTHKVHFDSTLVGDYKLLNFTWFEPPAPSQAPLASSPPMKAPTHRASPSLPSSTSNKGKHSNLILLFGIGTGLLITAIISVLIICSCAFrrrnskaspketesgkwscesdsEIRVLAEFKPGLITLDGHADDWEDIDGSEFSLLPALDPHAEHEYKGGKMNVKALHDGHDVYFLLQVDGEYVYSKGENTRCPSIALMFQIGEDATYHNMGGCKEGIGSCTSKTCKGHEVDIMHFSIGSAIPGRLYGGNPVDNSEGNGGDRFGHLVDVYAWTPHCRYLDGMGPSGIKLNHFRSFISHK
Low Complexity Region (SEG)
MDITPHTGISFSASDAAAINFSLTTHKVHFDSTLVGDYKLLNFTWFEppapsqaplassppMKAPTHRASPSLPSSTSNKGKHSNlillfgigtgllitaiiSVLIICSCAFRRRNSKASPKETESGKWSCESDSEIRVLAEFKPGLITLDGHADDWEDIDGSEFSLLPALDPHAEHEYKGGKMNVKALHDGHDVYFLLQVDGEYVYSKGENTRCPSIALMFQIGEDATYHNMGGCKEGIGSCTSKTCKGHEVDIMHFSIGSAIPGRLYGGNPVDNSEGNGGDRFGHLVDVYAWTPHCRYLDGMGPSGIKLNHFRSFISHK
Disordered region (IsUnstruct)
*************SDAAAINFSLTTHKVHFDSTLVGDYKLLNFTWFE*************************************NLILLFGIGTGLLITAIISVLIICSCAFR**********************EIRVLAEFKPGLITLDGHADDWEDIDGSEFSLLPALDPHAEHEYKGGKMNVKALHDGHDVYFLLQVDGEYVYSKGENTRCPSIALMFQIGEDATYHNMGGCKEGIGSCTSKTCKGHEVDIMHFSIGSAIPGRLYGGNPVD****NGGDRFGHLVDVYAWTPHCRYLDGMGPSGIKLNHFRSF****
Disordered Region (DISOPRED)
*DITPHTGISFSASDAAAINFSLTTHKVHFDSTLVGDYKLLNFTWFEPP*************************************ILLFGIGTGLLITAIISVLIICSCA****************************LAEFKPGLITLDGHADDWEDIDGSEFSLLPALDPHAEHEYKGGKMNVKALHDGHDVYFLLQVDGEYVYSKGENTRCPSIALMFQIGEDATYHNMGGCKEGIGSCTSKTCKGHEVDIMHFSIGSAIPGRLYGGNPVDNSEGNGGDRFGHLVDVYAWTPHCRYLDGMGPSGIKLNHF*SFI***
Disordered Region (DISEMBL)
MDITPHTGISFSASDAAAINFSLTTHKVHFDSTLVGDYKLLNFTWFEPPAP*****************************GKHSNLILLFGIGTGLLITAIISVLIICSCAFRRR******************DSEIRVLAEFKPGLITLDGHADDWEDIDGSEFSLLPALDPHAEHEYKGGKMNVKALHDGHDVYFLLQVDGEYVYSKGENTRCPSIALMFQIGEDATYHNMGGCKEGIGSCTSKTCKGHEVDIMHFSIGSAIPGRLYGGNPVDNSEGNGGDRFGHLVDVYAWTPHCRYLDGMGPSGIKLNHFRSFISHK
Disordered Region (DISPRO)
MDITPHTGISFSASDAAAINFSLTTHKVHFDSTLVGDYKLLNFTWFEPPAPSQAP***************************HSNLILLFGIGTGLLITAIISVLIICSCAFRR****************CESDSEIRVLAEFKPGLITLDGHADDWEDIDGSEFSLLPALDPHAEHEYKGGKMNVKALHDGHDVYFLLQVDGEYVYSKGENTRCPSIALMFQIGEDATYHNMGGCKEGIGSCTSKTCKGHEVDIMHFSIGSAIPGRLYGGNPVDNSEGNGGDRFGHLVDVYAWTPHCRYLDGMGPSGIKLNHFRSFISH*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDITPHTGISFSASDAAAINFSLTTHKVHFDSTLVGDYKLLNFTWFEPPAPSQAPLASSPPMKAPTHRASPSLPSSTSNKGKHSNLILLFGIGTGLLITAIISVLIICSCAFRRRNSKASPKETESGKWSCESDSEIRVLAEFKPGLITLDGHADDWEDIDGSEFSLLPALDPHAEHEYKGGKMNVKALHDGHDVYFLLQVDGEYVYSKGENTRCPSIALMFQIGEDATYHNMGGCKEGIGSCTSKTCKGHEVDIMHFSIGSAIPGRLYGGNPVDNSEGNGGDRFGHLVDVYAWTPHCRYLDGMGPSGIKLNHFRSFISHK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	321
15228739	361	heme binding protein [Arabidopsis thalia	0.573	0.509	0.793	3e-88
297817576	361	hypothetical protein ARALYDRAFT_907811 [	0.573	0.509	0.782	4e-88
356499833	397	PREDICTED: uncharacterized protein LOC10	0.573	0.463	0.793	2e-86
359487547	362	PREDICTED: uncharacterized protein LOC10	0.623	0.552	0.721	3e-86
255548411	364	conserved hypothetical protein [Ricinus	0.573	0.505	0.793	3e-86
147819855	362	hypothetical protein VITISV_023420 [Viti	0.623	0.552	0.717	7e-86
224128266	362	predicted protein [Populus trichocarpa]	0.573	0.508	0.782	1e-85
356534742	365	PREDICTED: uncharacterized protein LOC10	0.573	0.504	0.777	2e-83
449436413	375	PREDICTED: uncharacterized protein LOC10	0.566	0.485	0.782	4e-83
449507823	381	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.566	0.477	0.782	5e-83

>gi|15228739|ref|NP_191796.1| heme binding protein [Arabidopsis thaliana] gi|7340708|emb|CAB82951.1| putative protein [Arabidopsis thaliana] gi|19423876|gb|AAL87316.1| unknown protein [Arabidopsis thaliana] gi|22136956|gb|AAM91707.1| unknown protein [Arabidopsis thaliana] gi|332646823|gb|AEE80344.1| heme binding protein [Arabidopsis thaliana]

 Score =  331 bits (849), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 146/184 (79%), Positives = 165/184 (89%)

Query: 125 ESGKWSCESDSEIRVLAEFKPGLITLDGHADDWEDIDGSEFSLLPALDPHAEHEYKGGKM 184
           ESG+WSCESDSEI+VLA+F+PG+ITLDGH DDW+DIDGSEF L PALDP ++HEY  GKM
Sbjct: 23  ESGEWSCESDSEIQVLADFRPGIITLDGHNDDWKDIDGSEFPLRPALDPDSDHEYDAGKM 82

Query: 185 NVKALHDGHDVYFLLQVDGEYVYSKGENTRCPSIALMFQIGEDATYHNMGGCKEGIGSCT 244
            VKALHDG D+YFLL++DG Y Y KGEN +CPS+ALMFQIG+ ATYHNMGGCKEG  SCT
Sbjct: 83  TVKALHDGRDIYFLLEIDGNYAYDKGENNKCPSVALMFQIGDQATYHNMGGCKEGTDSCT 142

Query: 245 SKTCKGHEVDIMHFSIGSAIPGRLYGGNPVDNSEGNGGDRFGHLVDVYAWTPHCRYLDGM 304
           SK C+G EVDIMHFSIG+AIPGRLYGGNP+DN EGNGGDRFGHLVD+YAW PHCRYLDG+
Sbjct: 143 SKACRGFEVDIMHFSIGNAIPGRLYGGNPIDNGEGNGGDRFGHLVDIYAWNPHCRYLDGL 202

Query: 305 GPSG 308
           GPSG
Sbjct: 203 GPSG 206

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297817576|ref|XP_002876671.1| hypothetical protein ARALYDRAFT_907811 [Arabidopsis lyrata subsp. lyrata] gi|297322509|gb|EFH52930.1| hypothetical protein ARALYDRAFT_907811 [Arabidopsis lyrata subsp. lyrata]

 Score =  330 bits (847), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 144/184 (78%), Positives = 165/184 (89%)

Query: 125 ESGKWSCESDSEIRVLAEFKPGLITLDGHADDWEDIDGSEFSLLPALDPHAEHEYKGGKM 184
           ESG+WSCESDSEI+++A+F+PG+ITLDGH DDW+DIDGSEF L PALDP A+HEY  GKM
Sbjct: 23  ESGEWSCESDSEIQIIADFRPGIITLDGHNDDWKDIDGSEFPLRPALDPDADHEYDAGKM 82

Query: 185 NVKALHDGHDVYFLLQVDGEYVYSKGENTRCPSIALMFQIGEDATYHNMGGCKEGIGSCT 244
            VKALHDG D+YF+L++DG Y Y KGEN +CPS+ALMFQIG+ ATYHNMGGCKEG  SCT
Sbjct: 83  TVKALHDGRDIYFMLEIDGNYAYDKGENNKCPSVALMFQIGDQATYHNMGGCKEGTDSCT 142

Query: 245 SKTCKGHEVDIMHFSIGSAIPGRLYGGNPVDNSEGNGGDRFGHLVDVYAWTPHCRYLDGM 304
           SK C+G EVDIMHFSIG+AIPGRLYGGNP+DN EGNGGDRFGHLVD+YAW PHCRYLDG+
Sbjct: 143 SKACRGFEVDIMHFSIGNAIPGRLYGGNPIDNREGNGGDRFGHLVDIYAWNPHCRYLDGL 202

Query: 305 GPSG 308
           GPSG
Sbjct: 203 GPSG 206

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356499833|ref|XP_003518741.1| PREDICTED: uncharacterized protein LOC100786799 [Glycine max]

 Score =  325 bits (833), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 146/184 (79%), Positives = 167/184 (90%)

Query: 125 ESGKWSCESDSEIRVLAEFKPGLITLDGHADDWEDIDGSEFSLLPALDPHAEHEYKGGKM 184
           ESG WSCES+SEIRV  EFKPG+ITLDGHADDW+DIDGS F LLPALDP AE+E+KGGKM
Sbjct: 54  ESGHWSCESESEIRVETEFKPGVITLDGHADDWKDIDGSYFPLLPALDPDAENEFKGGKM 113

Query: 185 NVKALHDGHDVYFLLQVDGEYVYSKGENTRCPSIALMFQIGEDATYHNMGGCKEGIGSCT 244
           +VK++HDG D++FLLQVDG+Y YSKGE+ +CPS+ALMFQIG+ A+YH+MGGCKE   SCT
Sbjct: 114 SVKSVHDGRDIFFLLQVDGDYAYSKGESNKCPSVALMFQIGDSASYHDMGGCKEHSTSCT 173

Query: 245 SKTCKGHEVDIMHFSIGSAIPGRLYGGNPVDNSEGNGGDRFGHLVDVYAWTPHCRYLDGM 304
            KTCKGHEVDIMHFSIGSAIPGRLYGGNP+DN +GNGGDRFGHLVD+YAW PHCRYLDG+
Sbjct: 174 DKTCKGHEVDIMHFSIGSAIPGRLYGGNPLDNRDGNGGDRFGHLVDLYAWNPHCRYLDGI 233

Query: 305 GPSG 308
           GP G
Sbjct: 234 GPPG 237

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359487547|ref|XP_002277687.2| PREDICTED: uncharacterized protein LOC100244357 [Vitis vinifera] gi|296089782|emb|CBI39601.3| unnamed protein product [Vitis vinifera]

 Score =  324 bits (831), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 148/205 (72%), Positives = 171/205 (83%), Gaps = 5/205 (2%)

Query: 104 VLIICSCAFRRRNSKASPKETESGKWSCESDSEIRVLAEFKPGLITLDGHADDWEDIDGS 163
           +LI+ S      NS       ESG+WSCE D E R+ AE+KPGL+TLDGHADDW D+DG 
Sbjct: 10  ILILGSTQTHLANS-----HQESGEWSCEPDLETRIHAEYKPGLVTLDGHADDWSDVDGL 64

Query: 164 EFSLLPALDPHAEHEYKGGKMNVKALHDGHDVYFLLQVDGEYVYSKGENTRCPSIALMFQ 223
           E SLLPALDP  +H+YKGGKM VKALHDG D++F+LQVDG+Y YSKG N +CPS+ALMFQ
Sbjct: 65  ELSLLPALDPDEDHQYKGGKMTVKALHDGKDIFFMLQVDGDYAYSKGNNNKCPSVALMFQ 124

Query: 224 IGEDATYHNMGGCKEGIGSCTSKTCKGHEVDIMHFSIGSAIPGRLYGGNPVDNSEGNGGD 283
           IGE+ATYHNMGGCKE    CTSKTC+G+EVDIMHFSIG+AIPGRLYGGNP+DN EGNGGD
Sbjct: 125 IGENATYHNMGGCKEEPDKCTSKTCRGNEVDIMHFSIGNAIPGRLYGGNPIDNGEGNGGD 184

Query: 284 RFGHLVDVYAWTPHCRYLDGMGPSG 308
           RFGHLVD+YAW PHCR+LDG+GPSG
Sbjct: 185 RFGHLVDLYAWNPHCRHLDGLGPSG 209

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255548411|ref|XP_002515262.1| conserved hypothetical protein [Ricinus communis] gi|223545742|gb|EEF47246.1| conserved hypothetical protein [Ricinus communis]

 Score =  324 bits (831), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 146/184 (79%), Positives = 167/184 (90%)

Query: 125 ESGKWSCESDSEIRVLAEFKPGLITLDGHADDWEDIDGSEFSLLPALDPHAEHEYKGGKM 184
           ESG+WSC+SDS I++ AEF+PGLITLDG+ADDW+DIDG EFSLLPALDP  + EYKGGKM
Sbjct: 26  ESGEWSCDSDSGIQLQAEFRPGLITLDGNADDWKDIDGFEFSLLPALDPDDDKEYKGGKM 85

Query: 185 NVKALHDGHDVYFLLQVDGEYVYSKGENTRCPSIALMFQIGEDATYHNMGGCKEGIGSCT 244
            VKALHDG DV+FLLQVDG+Y Y+KG N +CPS+ALMFQIG+ ATYHNMGGC EG  +CT
Sbjct: 86  TVKALHDGKDVFFLLQVDGDYAYTKGTNNKCPSVALMFQIGDHATYHNMGGCGEGPDACT 145

Query: 245 SKTCKGHEVDIMHFSIGSAIPGRLYGGNPVDNSEGNGGDRFGHLVDVYAWTPHCRYLDGM 304
           SKTCKGHEVDIMHFSIG+AIPGRLYGGNP+DN +GNGGDRFGHLVD+YAW PHCRY+DG+
Sbjct: 146 SKTCKGHEVDIMHFSIGNAIPGRLYGGNPIDNRDGNGGDRFGHLVDLYAWNPHCRYIDGI 205

Query: 305 GPSG 308
           GPSG
Sbjct: 206 GPSG 209

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147819855|emb|CAN71815.1| hypothetical protein VITISV_023420 [Vitis vinifera]

 Score =  323 bits (828), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 147/205 (71%), Positives = 171/205 (83%), Gaps = 5/205 (2%)

Query: 104 VLIICSCAFRRRNSKASPKETESGKWSCESDSEIRVLAEFKPGLITLDGHADDWEDIDGS 163
           +LI+ S      NS       ESG+WSCE D E R+ AE+KPGL+TLDGHADDW D+DG 
Sbjct: 10  ILILGSTQTHLANS-----HQESGEWSCEPDLETRIHAEYKPGLVTLDGHADDWSDVDGL 64

Query: 164 EFSLLPALDPHAEHEYKGGKMNVKALHDGHDVYFLLQVDGEYVYSKGENTRCPSIALMFQ 223
           + SLLPALDP  +H+YKGGKM VKALHDG D++F+LQVDG+Y YSKG N +CPS+ALMFQ
Sbjct: 65  DLSLLPALDPDEDHQYKGGKMTVKALHDGKDIFFMLQVDGDYAYSKGNNNKCPSVALMFQ 124

Query: 224 IGEDATYHNMGGCKEGIGSCTSKTCKGHEVDIMHFSIGSAIPGRLYGGNPVDNSEGNGGD 283
           IGE+ATYHNMGGCKE    CTSKTC+G+EVDIMHFSIG+AIPGRLYGGNP+DN EGNGGD
Sbjct: 125 IGENATYHNMGGCKEEPDKCTSKTCRGNEVDIMHFSIGNAIPGRLYGGNPIDNGEGNGGD 184

Query: 284 RFGHLVDVYAWTPHCRYLDGMGPSG 308
           RFGHLVD+YAW PHCR+LDG+GPSG
Sbjct: 185 RFGHLVDLYAWNPHCRHLDGLGPSG 209

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224128266|ref|XP_002320284.1| predicted protein [Populus trichocarpa] gi|222861057|gb|EEE98599.1| predicted protein [Populus trichocarpa]

 Score =  322 bits (825), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 144/184 (78%), Positives = 164/184 (89%)

Query: 125 ESGKWSCESDSEIRVLAEFKPGLITLDGHADDWEDIDGSEFSLLPALDPHAEHEYKGGKM 184
           ESG+WSCESD EIR+ AEFKPG ITLDGHADDW+DIDG + SLLPALDP  + +Y GGKM
Sbjct: 25  ESGEWSCESDEEIRIEAEFKPGFITLDGHADDWKDIDGLDSSLLPALDPDDDKKYTGGKM 84

Query: 185 NVKALHDGHDVYFLLQVDGEYVYSKGENTRCPSIALMFQIGEDATYHNMGGCKEGIGSCT 244
            VKALHDG+D++FLLQVDG Y Y+KG+N +CPS+ALMF IG++ATYHNMGGCKEG G+C 
Sbjct: 85  TVKALHDGNDMFFLLQVDGNYAYTKGDNKKCPSVALMFPIGDEATYHNMGGCKEGTGTCN 144

Query: 245 SKTCKGHEVDIMHFSIGSAIPGRLYGGNPVDNSEGNGGDRFGHLVDVYAWTPHCRYLDGM 304
            KTCKGHEVDIMHFSIG+AIPGRLYGGNP+DN EGNGGDRFGHLVD+Y+W PHCRYLDG 
Sbjct: 145 RKTCKGHEVDIMHFSIGNAIPGRLYGGNPLDNGEGNGGDRFGHLVDLYSWNPHCRYLDGT 204

Query: 305 GPSG 308
           GPSG
Sbjct: 205 GPSG 208

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356534742|ref|XP_003535911.1| PREDICTED: uncharacterized protein LOC100798285 [Glycine max]

 Score =  315 bits (807), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 143/184 (77%), Positives = 164/184 (89%)

Query: 125 ESGKWSCESDSEIRVLAEFKPGLITLDGHADDWEDIDGSEFSLLPALDPHAEHEYKGGKM 184
           ESG WSCES+SEIRV AEFK G+ITLDGH DDW+DIDGS F LLPALDP AE+E+KGGK+
Sbjct: 22  ESGHWSCESESEIRVEAEFKYGVITLDGHTDDWKDIDGSYFPLLPALDPDAENEFKGGKI 81

Query: 185 NVKALHDGHDVYFLLQVDGEYVYSKGENTRCPSIALMFQIGEDATYHNMGGCKEGIGSCT 244
            VK++HDG D++FLLQVDG+Y YSKGE+ +CPS+ALMFQIG+ A+YHNMGGC+E   SCT
Sbjct: 82  TVKSVHDGRDIFFLLQVDGDYAYSKGESNKCPSVALMFQIGDGASYHNMGGCEEHPTSCT 141

Query: 245 SKTCKGHEVDIMHFSIGSAIPGRLYGGNPVDNSEGNGGDRFGHLVDVYAWTPHCRYLDGM 304
            K+CKGHEVDIMHFSIGSAIPGRLYGGNP+DN  GNGGDRFGHLVD+YAW PHCRYLDG+
Sbjct: 142 DKSCKGHEVDIMHFSIGSAIPGRLYGGNPLDNRYGNGGDRFGHLVDLYAWNPHCRYLDGI 201

Query: 305 GPSG 308
           GP G
Sbjct: 202 GPPG 205

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449436413|ref|XP_004135987.1| PREDICTED: uncharacterized protein LOC101219938 [Cucumis sativus]

 Score =  314 bits (804), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 144/184 (78%), Positives = 165/184 (89%), Gaps = 2/184 (1%)

Query: 125 ESGKWSCESDSEIRVLAEFKPGLITLDGHADDWEDIDGSEFSLLPALDPHAEHEYKGGKM 184
           ESG+WSCESDS+I ++AEF+PG+ITLDGHADDW DIDG EFSLLPALDP  + EY GGKM
Sbjct: 25  ESGEWSCESDSDIGIVAEFRPGIITLDGHADDWNDIDGFEFSLLPALDPDEDKEYSGGKM 84

Query: 185 NVKALHDGHDVYFLLQVDGEYVYSKGENTRCPSIALMFQIGEDATYHNMGGCKEGIGSCT 244
            VKALHDG DV+FLLQVDG+Y YSKG++++CPS+ALMFQIGE ATYH+MGGCKEG  +CT
Sbjct: 85  TVKALHDGRDVFFLLQVDGQYRYSKGDSSKCPSVALMFQIGESATYHSMGGCKEGKDTCT 144

Query: 245 SKTCKGHEVDIMHFSIGSAIPGRLYGGNPVDNSEGNGGDRFGHLVDVYAWTPHCRYLDGM 304
           +KTCKG+EVD+MHFSIG+AIPGRLYGGN VD   G GGDRFGHLVDVYAW PHCRYLDG+
Sbjct: 145 NKTCKGYEVDLMHFSIGNAIPGRLYGGNNVD--IGTGGDRFGHLVDVYAWNPHCRYLDGI 202

Query: 305 GPSG 308
           GPSG
Sbjct: 203 GPSG 206

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449507823|ref|XP_004163138.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized LOC101219938 [Cucumis sativus]

 Score =  313 bits (803), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 144/184 (78%), Positives = 165/184 (89%), Gaps = 2/184 (1%)

Query: 125 ESGKWSCESDSEIRVLAEFKPGLITLDGHADDWEDIDGSEFSLLPALDPHAEHEYKGGKM 184
           ESG+WSCESDS+I ++AEF+PG+ITLDGHADDW DIDG EFSLLPALDP  + EY GGKM
Sbjct: 25  ESGEWSCESDSDIGIVAEFRPGIITLDGHADDWNDIDGFEFSLLPALDPDEDKEYSGGKM 84

Query: 185 NVKALHDGHDVYFLLQVDGEYVYSKGENTRCPSIALMFQIGEDATYHNMGGCKEGIGSCT 244
            VKALHDG DV+FLLQVDG+Y YSKG++++CPS+ALMFQIGE ATYH+MGGCKEG  +CT
Sbjct: 85  TVKALHDGRDVFFLLQVDGQYRYSKGDSSKCPSVALMFQIGESATYHSMGGCKEGKDTCT 144

Query: 245 SKTCKGHEVDIMHFSIGSAIPGRLYGGNPVDNSEGNGGDRFGHLVDVYAWTPHCRYLDGM 304
           +KTCKG+EVD+MHFSIG+AIPGRLYGGN VD   G GGDRFGHLVDVYAW PHCRYLDG+
Sbjct: 145 NKTCKGYEVDLMHFSIGNAIPGRLYGGNNVDI--GTGGDRFGHLVDVYAWNPHCRYLDGI 202

Query: 305 GPSG 308
           GPSG
Sbjct: 203 GPSG 206

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	321
TAIR|locus:2096064	361	AT3G62370 [Arabidopsis thalian	0.573	0.509	0.793	2e-86
TAIR|locus:2132168	725	AT4G02010 [Arabidopsis thalian	0.383	0.169	0.422	1.9e-20

TAIR|locus:2096064 AT3G62370 [Arabidopsis thaliana (taxid:3702)]

 Score = 864 (309.2 bits), Expect = 2.0e-86, P = 2.0e-86
 Identities = 146/184 (79%), Positives = 165/184 (89%)

Query:   125 ESGKWSCESDSEIRVLAEFKPGLITLDGHADDWEDIDGSEFSLLPALDPHAEHEYKGGKM 184
             ESG+WSCESDSEI+VLA+F+PG+ITLDGH DDW+DIDGSEF L PALDP ++HEY  GKM
Sbjct:    23 ESGEWSCESDSEIQVLADFRPGIITLDGHNDDWKDIDGSEFPLRPALDPDSDHEYDAGKM 82

Query:   185 NVKALHDGHDVYFLLQVDGEYVYSKGENTRCPSIALMFQIGEDATYHNMGGCKEGIGSCT 244
              VKALHDG D+YFLL++DG Y Y KGEN +CPS+ALMFQIG+ ATYHNMGGCKEG  SCT
Sbjct:    83 TVKALHDGRDIYFLLEIDGNYAYDKGENNKCPSVALMFQIGDQATYHNMGGCKEGTDSCT 142

Query:   245 SKTCKGHEVDIMHFSIGSAIPGRLYGGNPVDNSEGNGGDRFGHLVDVYAWTPHCRYLDGM 304
             SK C+G EVDIMHFSIG+AIPGRLYGGNP+DN EGNGGDRFGHLVD+YAW PHCRYLDG+
Sbjct:   143 SKACRGFEVDIMHFSIGNAIPGRLYGGNPIDNGEGNGGDRFGHLVDIYAWNPHCRYLDGL 202

Query:   305 GPSG 308
             GPSG
Sbjct:   203 GPSG 206

GO:0020037 "heme binding" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2132168 AT4G02010 [Arabidopsis thaliana (taxid:3702)]

 Score = 239 (89.2 bits), Expect = 1.9e-20, Sum P(2) = 1.9e-20
 Identities = 52/123 (42%), Positives = 64/123 (52%)

Query:     1 MDITPHTGISFSASDAAAINFSLTTHKVHFDSTLVGDYKLLNFTWFEXXXXXXXXXXXXX 60
             MDITPH+GISFSAS A+AIN SL +HK+ F  TLVGDYKLLN TWFE             
Sbjct:   221 MDITPHSGISFSASQASAINSSLISHKIQFSPTLVGDYKLLNLTWFEAPAPSQAPLVASS 280

Query:    61 XMKAPTHRASPSLPSSTSNKGKHSNXXXXXXXXXXXXXXXXXSVLIICSCAFRRRNSKAS 120
               KAP+  +S +    +  K +H N                 +VL+ICS A R   +   
Sbjct:   281 PHKAPSQGSSATTSVRSPGKKRHPNLILIFSIAAGVLILAIITVLVICSRALREEKAPDP 340

Query:   121 PKE 123
              KE
Sbjct:   341 HKE 343

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	321
pfam09459	180	pfam09459, EB_dh, Ethylbenzene dehydrogenase	2e-20
smart00887	209	smart00887, EB_dh, Ethylbenzene dehydrogenase	8e-16
cd00241	158	cd00241, DOMON_like, Domon-like ligand-binding dom	1e-04

>gnl|CDD|220250 pfam09459, EB_dh, Ethylbenzene dehydrogenase

 Score = 86.3 bits (214), Expect = 2e-20
 Identities = 33/146 (22%), Positives = 48/146 (32%), Gaps = 30/146 (20%)

Query: 154 ADDWEDIDGSEFSLLPALDPHAEHEYKGGKMN--VKALHDGHDVYFLLQVDGE---YVYS 208
           A DW      E  L P  + + E + KG      VKA +DG ++YF L            
Sbjct: 1   APDWSKAPPVEIPLYPGPNVYPEPDPKGATKPVTVKAAYDGENIYFRLSWKDPTRSLEKQ 60

Query: 209 KGENTRCPSIALMFQIGEDATYHNMGGCKEGIGSCTSKTCKGHEVDIMHFSIGSAIPGRL 268
             ++     +A+MF  G+       G                       F  G+A  GR 
Sbjct: 61  GEDDYYEDKVAVMFPDGKVTPAAGAGCWLS-------------CHKDARFPAGAAGRGRK 107

Query: 269 YGGNPVDNSEGNGGDRFGHLVDVYAW 294
           Y G+             G  VD++ W
Sbjct: 108 YMGDS------------GQPVDLWHW 121

Eythylbenzene dehydrogenase is a heterotrimer of three subunits that catalyzes the anaerobic degradation of hydrocarbons. The alpha subunit contains the catalytic centre as a Molybdenum cofactor-complex. This removes an electron-pair from the hydrocarbon and passes it along an electron transport system involving iron-sulphur complexes held in the beta subunit and a Haem b molecule contained in the gamma subunit. The electron-pair is then subsequently passed to an as yet unknown receiver. The enzyme is found in a variety of different bacteria. Length = 180

>gnl|CDD|214885 smart00887, EB_dh, Ethylbenzene dehydrogenase

 Score = 74.5 bits (183), Expect = 8e-16
 Identities = 23/157 (14%), Positives = 35/157 (22%), Gaps = 6/157 (3%)

Query: 154 ADDWEDIDGSEFSLLPALDPHAEHEYKGGKMNVKALHDGHDVYFLLQVDGEYVYSKGENT 213
           A DW     SE  L        E           AL    D         +Y    G   
Sbjct: 1   APDWSKAPPSEIPLFYPGQSAVEWVLVKDDHGGYALFKWGDACASCHKVPDYAADDGWKM 60

Query: 214 RCPS-IALMFQIGEDATYHNMGGCKEGIGSCTSKTCKGHEVDIMHFSIGS-AIPGRLYGG 271
                +  +F   + A   N+            +            S G     G + G 
Sbjct: 61  LAGGKLEPLFWEDKTADVPNIVQIAYDADGLAVRFPLKAPGLPATASAGDMWHMGAVRGP 120

Query: 272 NPVDNSEGNGGDRFGHLVDVYAWTPHCRYLDGMGPSG 308
             +   +     + G  V+   W         M  + 
Sbjct: 121 VAIMLDD----GKVGEAVNAGYWGGCHGDARTMAGAA 153

Eythylbenzene dehydrogenase is a heterotrimer of three subunits that catalyses the anaerobic degradation of hydrocarbons. The alpha subunit contains the catalytic centre as a Molybdenum cofactor-complex. This removes an electron-pair from the hydrocarbon and passes it along an electron transport system involving iron-sulphur complexes held in the beta subunit and a Haem b molecule contained in the gamma subunit. The electron-pair is then subsequently passed to an as yet unknown receiver. The enzyme is found in a variety of different bacteria. Length = 209

>gnl|CDD|187675 cd00241, DOMON_like, Domon-like ligand-binding domains

 Score = 41.8 bits (97), Expect = 1e-04
 Identities = 15/73 (20%), Positives = 22/73 (30%), Gaps = 3/73 (4%)

Query: 166 SLLPALDPHAEHEYKGGKMNVKALHDGHDVYFLLQVDGEYVYSK---GENTRCPSIALMF 222
           +L                  VK   DG  +YFL++V  + +              + L F
Sbjct: 2   ALDIDPSGLGGGGPGDLSATVKLAWDGEYLYFLVEVTDDVLRDTAALSLVWDGDGVELFF 61

Query: 223 QIGEDATYHNMGG 235
               D T  N  G
Sbjct: 62  DPDNDGTDGNAFG 74

DOMON-like domains can be found in all three kindgoms of life and are a diverse group of ligand binding domains that have been shown to interact with sugars and hemes. DOMON domains were initially thought to confer protein-protein interactions. They were subsequently found as a heme-binding motif in cellobiose dehydrogenase, an extracellular fungal oxidoreductase that degrades both lignin and cellulose, and in ethylbenzene dehydrogenase, an enzyme that aids in the anaerobic degradation of hydrocarbons. The domain interacts with sugars in the type 9 carbohydrate binding modules (CBM9), which are present in a variety of glycosyl hydrolases, and it can also be found at the N-terminus of sensor histidine kinases. Length = 158

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	321
PF09459	261	EB_dh: Ethylbenzene dehydrogenase; InterPro: IPR01	99.64
TIGR03477	205	DMSO_red_II_gam DMSO reductase family type II enzy	98.16
PF04478	154	Mid2: Mid2 like cell wall stress sensor; InterPro:	97.79
PTZ00382	96	Variant-specific surface protein (VSP); Provisiona	97.27
PF01102	122	Glycophorin_A: Glycophorin A; InterPro: IPR001195	97.19
PF15102	146	TMEM154: TMEM154 protein family	97.04
PF13908	179	Shisa: Wnt and FGF inhibitory regulator	96.22
PF02480	439	Herpes_gE: Alphaherpesvirus glycoprotein E; InterP	96.2
PF08693	40	SKG6: Transmembrane alpha-helix domain; InterPro:	95.95
PF12273	130	RCR: Chitin synthesis regulation, resistance to Co	95.6
PF03302	397	VSP: Giardia variant-specific surface protein; Int	94.9
PF04478	154	Mid2: Mid2 like cell wall stress sensor; InterPro:	94.6
PF05454	290	DAG1: Dystroglycan (Dystrophin-associated glycopro	94.55
PF15345	233	TMEM51: Transmembrane protein 51	94.54
PF14575	75	EphA2_TM: Ephrin type-A receptor 2 transmembrane d	94.1
PF06697	278	DUF1191: Protein of unknown function (DUF1191); In	94.07
PF01299	306	Lamp: Lysosome-associated membrane glycoprotein (L	93.86
PF07204	98	Orthoreo_P10: Orthoreovirus membrane fusion protei	93.77
PF08374	221	Protocadherin: Protocadherin; InterPro: IPR013585	93.62
PF12768	281	Rax2: Cortical protein marker for cell polarity	93.19
PF06452	185	DUF1083: Domain of unknown function (DUF1083); Int	93.09
PF06679	163	DUF1180: Protein of unknown function (DUF1180); In	92.77
PF12877	684	DUF3827: Domain of unknown function (DUF3827); Int	92.72
PF01034	64	Syndecan: Syndecan domain; InterPro: IPR001050 The	92.52
PF13908	179	Shisa: Wnt and FGF inhibitory regulator	92.03
cd00005	186	CBM9 Family 9 carbohydrate-binding module (CBM), p	91.92
PF02439	38	Adeno_E3_CR2: Adenovirus E3 region protein CR2; In	91.86
PF07213	79	DAP10: DAP10 membrane protein; InterPro: IPR009861	91.01
PF15069	143	FAM163: FAM163 family	89.79
PF05568	189	ASFV_J13L: African swine fever virus J13L protein;	89.22
PF10873	155	DUF2668: Protein of unknown function (DUF2668); In	89.08
PF15102	146	TMEM154: TMEM154 protein family	88.68
PF02480	439	Herpes_gE: Alphaherpesvirus glycoprotein E; InterP	86.34
COG3889	872	Predicted solute binding protein [General function	86.17
PF14610	189	DUF4448: Protein of unknown function (DUF4448)	86.04
PHA03265	402	envelope glycoprotein D; Provisional	85.71
PF06365	202	CD34_antigen: CD34/Podocalyxin family; InterPro: I	85.56
PF15065	350	NCU-G1: Lysosomal transcription factor, NCU-G1	84.98
TIGR01478	295	STEVOR variant surface antigen, stevor family. Thi	83.58
PF02009	299	Rifin_STEVOR: Rifin/stevor family; InterPro: IPR00	83.58
PF05393	94	Hum_adeno_E3A: Human adenovirus early E3A glycopro	83.49
PLN03150	623	hypothetical protein; Provisional	83.05
PF12191	129	stn_TNFRSF12A: Tumour necrosis factor receptor stn	82.89
PF01034	64	Syndecan: Syndecan domain; InterPro: IPR001050 The	82.86
PF05808	162	Podoplanin: Podoplanin; InterPro: IPR008783 This f	82.5
PF05083	74	LST1: LST-1 protein; InterPro: IPR007775 B144/LST1	82.13
PF05454	290	DAG1: Dystroglycan (Dystrophin-associated glycopro	81.61
PTZ00370	296	STEVOR; Provisional	80.7

>PF09459 EB_dh: Ethylbenzene dehydrogenase; InterPro: IPR019020 This entry represents a haem-binding domain found in cytochromes b558/566 (subunit A), c-551 and c-552, as well as in members of the type-II members of the microbial dimethyl sulphoxide (DMSO) reductase family

Probab=99.64  E-value=5.3e-17  Score=149.46  Aligned_cols=127  Identities=32%  Similarity=0.585  Sum_probs=60.5

Q ss_pred             CCcccccCccccccccCCCC--CCCCCCCCeeEEEEeecCccEEEEEEecC---cee------eec--CCcccCCceeee
Q 020804          155 DDWEDIDGSEFSLLPALDPH--AEHEYKGGKMNVKALHDGHDVYFLLQVDG---EYV------YSK--GENTRCPSIALM  221 (321)
Q Consensus       155 ~dw~~i~~~~~~l~pal~~d--~~~~y~~g~~~vk~~hdg~~~ffll~v~g---~y~------~~~--~~~~~c~svalm  221 (321)
                      .+|++|+..+++|.|.+++.  +..++....|+|||+|||++||||||.+.   ++.      |.+  ....-+..+|+|
T Consensus         2 ~~W~~~p~~~v~L~pg~~~~p~~~~~~~~~~v~VkAa~dg~~Iyfll~W~d~t~~~~~~p~~~~~~~~~~~~yeDk~Avm   81 (261)
T PF09459_consen    2 PDWSKAPPVEVPLYPGQSSYPEPPPKGGTIPVEVKAAHDGENIYFLLEWPDPTRSYERHPDGGWVQAGEDDYYEDKVAVM   81 (261)
T ss_dssp             HHHHTS-EEEEE-EE--GGG----T-----EEEEEEEE-SSEEEEEEEEE-----S------------STT----EEEEE
T ss_pred             chhccCCCeEEEECCCccCCccccCCCCcEEEEEEEEECCCeEEEEEEecCCCCCccccccccccccCCCCcCcceEEEE
Confidence            58999999999999996543  44588889999999999999999999988   233      223  567788999999


Q ss_pred             eeecCCceeeecCCCCCCCCcccccccCCceeeEEEEEeccccCceecCCCCCCCCCCCCCCccccceeeeecCC-----
Q 020804          222 FQIGEDATYHNMGGCKEGIGSCTSKTCKGHEVDIMHFSIGSAIPGRLYGGNPVDNSEGNGGDRFGHLVDVYAWTP-----  296 (321)
Q Consensus       222 f~~g~~a~y~nmggc~~~~~~c~~~~c~g~evdi~hf~i~~aipgr~yg~n~~d~~~g~g~d~~g~l~d~yawnp-----  296 (321)
                      |.+| ++.++.+.||        ..+|...+.|+.|+.+++   ||.|-+..            |+++|++.|++     
T Consensus        82 f~~g-~v~~~~~~Gc--------~~~ch~~~~~~p~~~~~~---~~ky~~~~------------g~~vdlW~Wka~r~~~  137 (261)
T PF09459_consen   82 FSDG-DVPYFGQDGC--------WHTCHKPLRDMPAAPIGR---GRKYMGDS------------GEPVDLWHWKASRSGM  137 (261)
T ss_dssp             E----------------------------ESST--T--GG-------GT-BT------------TB-EEEEEEET-----
T ss_pred             eeec-cccccccccc--------cccccCCcccccCCCccc---ceeeeCCC------------CeEEEEEEeccccccc
Confidence            9999 8888865554        678999999999998887   88898874            99999999999     


Q ss_pred             --------cccccCCCC
Q 020804          297 --------HCRYLDGMG  305 (321)
Q Consensus       297 --------hcr~~dg~~  305 (321)
                              +|||.+|.|
T Consensus       138 ~~d~~~~~~r~~~~G~g  154 (261)
T PF09459_consen  138 ADDGYVFGKRRYDAGYG  154 (261)
T ss_dssp             -----------------
T ss_pred             ccccccccccccccccc
Confidence                    899999998

The DMSO reductase family is a large and rapidly expanding group of enzymes found in bacteria and archaea that share a common form of molybdenum cofactor known as bis(molybdopterin guanine dinucleotide)Mo []. In addition to the molybdopterin subunit, these enzymes also contain an iron-sulphur subunit. These include two distinct but very closely related periplasmic proteins of anaerobic respiration: selenate reductase and chlorate reductase []. Other proteins containing this subunit include dimethyl sulphide dehydrogenase and ethylbenzene dehydrogenase [, , ]. One member of the DMSO reductase family is eythylbenzene dehydrogenase, which is a heterotrimer of three subunits that catalyses the anaerobic degradation of hydrocarbons (alpha, beta and gamma subunits). This entry matches the gamma subunit, whose structure is known []. The alpha subunit contains the catalytic centre as a Molybdenum cofactor-complex. This removes an electron-pair from the hydrocarbon and passes it along an electron transport system involving iron-sulphur complexes held in the beta subunit and a Haem b molecule contained in the gamma subunit. The electron-pair is then subsequently passed to an as yet unknown receiver. The enzyme is found in a variety of different bacteria.; GO: 0020037 heme binding; PDB: 2IVF_C.

>TIGR03477 DMSO_red_II_gam DMSO reductase family type II enzyme, heme b subunit

Probab=98.16  E-value=9.6e-06  Score=74.40  Aligned_cols=104  Identities=20%  Similarity=0.304  Sum_probs=77.3

Q ss_pred             CceeeecCCCCCcccccCccccccccCCCCCCCCCCCC--eeEEEEeecCccEEEEEEecCceeeecCC--cccCCceee
Q 020804          145 PGLITLDGHADDWEDIDGSEFSLLPALDPHAEHEYKGG--KMNVKALHDGHDVYFLLQVDGEYVYSKGE--NTRCPSIAL  220 (321)
Q Consensus       145 pg~~tldg~~~dw~~i~~~~~~l~pal~~d~~~~y~~g--~~~vk~~hdg~~~ffll~v~g~y~~~~~~--~~~c~sval  220 (321)
                      -|.+.+|-.+.-|+.++..+..|.|+---.+...|++-  +|.|||+||++.|||+|+=+-+=+=....  +.-=-.||+
T Consensus         8 ~g~~~~dp~d~vW~~ap~~~V~l~~q~~~~pn~~~~~~~~~v~VkA~~n~~~Iyf~l~W~D~T~d~~~~~~d~F~DgvAv   87 (205)
T TIGR03477         8 GGDLPLDPDAPVWAGAPATEVPMVSAPLVHPFLADTGVIKTLDVQAARNGERLAVRLKWADETHDVNTDGTDSFVDGVAV   87 (205)
T ss_pred             CCCCCCCcchhHHhcCCcEEEEeccccccccCccCCCcceEEEEEEEECCCeEEEEEEECCCCCccccccccccCcceEE
Confidence            36889999999999999999999776553233334333  79999999999999999876543111111  122246999


Q ss_pred             eeeecCCc-eeeecCCCCCCCCcccccccCCceeeEEEEEec
Q 020804          221 MFQIGEDA-TYHNMGGCKEGIGSCTSKTCKGHEVDIMHFSIG  261 (321)
Q Consensus       221 mf~~g~~a-~y~nmggc~~~~~~c~~~~c~g~evdi~hf~i~  261 (321)
                      +|++..+. .|.-||+             .+|.|.|-||.-.
T Consensus        88 qFP~~~~~~p~i~MG~-------------~~~pVniw~W~a~  116 (205)
T TIGR03477        88 QFPVSRGSLPYITMGA-------------ADNPVNIWYWKAD  116 (205)
T ss_pred             EcccCCCccCceecCC-------------CCCceEEEEECCC
Confidence            99999877 7888886             5789999999864

This model represents a heme b-binding subunit, typically called the gamma subunit, of various proteins that also contain a molybdopterin subunit and an iron-sulfur protein. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase and ethylbenzene dehydrogenase.

>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region

Probab=97.79  E-value=4e-05  Score=68.16  Aligned_cols=53  Identities=19%  Similarity=0.293  Sum_probs=36.5

Q ss_pred             cceEEEeehhhHHHHHHHHHHHhhheeecccCCCCCCCcccCCcccccCCCceeEEEEeeCceee
Q 020804           85 NLILLFGIGTGLLITAIISVLIICSCAFRRRNSKASPKETESGKWSCESDSEIRVLAEFKPGLIT  149 (321)
Q Consensus        85 S~iaIVGIaVG~vilLLL~VliLcLC~~Rrkkkka~~~~~~~~~~~c~~~~~~~~~a~~~pg~~t  149 (321)
                      ++.+|||++||.++.+||++++|+|++++|+||++-            -+++.+|..-|++..++
T Consensus        47 nknIVIGvVVGVGg~ill~il~lvf~~c~r~kktdf------------idSdGkvvtay~~n~~~   99 (154)
T PF04478_consen   47 NKNIVIGVVVGVGGPILLGILALVFIFCIRRKKTDF------------IDSDGKVVTAYRSNKLT   99 (154)
T ss_pred             CccEEEEEEecccHHHHHHHHHhheeEEEecccCcc------------ccCCCcEEEEEcCchHH
Confidence            457889999997776666655555555555555432            34567899999999775

The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].

>PTZ00382 Variant-specific surface protein (VSP); Provisional

Probab=97.27  E-value=0.00024  Score=58.05  Aligned_cols=38  Identities=13%  Similarity=0.033  Sum_probs=26.7

Q ss_pred             CCCCCCccceEEEeehhhHHHHHHHHHHHhhheeeccc
Q 020804           78 SNKGKHSNLILLFGIGTGLLITAIISVLIICSCAFRRR  115 (321)
Q Consensus        78 SsKkKklS~iaIVGIaVG~vilLLL~VliLcLC~~Rrk  115 (321)
                      +.++..++..+|+||+||+++++.+++.+|++.+++||
T Consensus        57 st~~~~ls~gaiagi~vg~~~~v~~lv~~l~w~f~~r~   94 (96)
T PTZ00382         57 GANRSGLSTGAIAGISVAVVAVVGGLVGFLCWWFVCRG   94 (96)
T ss_pred             ccCCCCcccccEEEEEeehhhHHHHHHHHHhheeEEee
Confidence            34456789999999999988766555555555555443

>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane

Probab=97.19  E-value=9.9e-05  Score=63.22  Aligned_cols=45  Identities=24%  Similarity=0.251  Sum_probs=29.6

Q ss_pred             CCCCCCccceEEEeehhhHHHHHHHHHHHhhheeecccCCCCCCC
Q 020804           78 SNKGKHSNLILLFGIGTGLLITAIISVLIICSCAFRRRNSKASPK  122 (321)
Q Consensus        78 SsKkKklS~iaIVGIaVG~vilLLL~VliLcLC~~Rrkkkka~~~  122 (321)
                      ..-..+++..+|++|++|.++.+++++++|.||.+|+|||.....
T Consensus        55 ~ql~h~fs~~~i~~Ii~gv~aGvIg~Illi~y~irR~~Kk~~~~~   99 (122)
T PF01102_consen   55 SQLVHRFSEPAIIGIIFGVMAGVIGIILLISYCIRRLRKKSSSDV   99 (122)
T ss_dssp             -SSSSSSS-TCHHHHHHHHHHHHHHHHHHHHHHHHHHS-------
T ss_pred             cccccCccccceeehhHHHHHHHHHHHHHHHHHHHHHhccCCCCC
Confidence            334667888999999999999888887888888877666654433

Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.

>PF15102 TMEM154: TMEM154 protein family

Probab=97.04  E-value=0.0024  Score=56.64  Aligned_cols=26  Identities=27%  Similarity=0.303  Sum_probs=19.4

Q ss_pred             cccCCCCCCCcccCCcc--cccCCCcee
Q 020804          113 RRRNSKASPKETESGKW--SCESDSEIR  138 (321)
Q Consensus       113 Rrkkkka~~~~~~~~~~--~c~~~~~~~  138 (321)
                      ||||.|+.++.+.+-+.  +|+-+.+-.
T Consensus        83 kRkr~K~~~ss~gsq~~~qt~e~~~Env  110 (146)
T PF15102_consen   83 KRKRTKQEPSSQGSQSALQTYELGSENV  110 (146)
T ss_pred             eecccCCCCccccccccccccccCcccc
Confidence            67777887888877765  899888643

>PF13908 Shisa: Wnt and FGF inhibitory regulator

Probab=96.22  E-value=0.006  Score=53.33  Aligned_cols=31  Identities=16%  Similarity=0.421  Sum_probs=17.3

Q ss_pred             cceEEEeehhhHHHHHHHHHHHhhheeeccc
Q 020804           85 NLILLFGIGTGLLITAIISVLIICSCAFRRR  115 (321)
Q Consensus        85 S~iaIVGIaVG~vilLLL~VliLcLC~~Rrk  115 (321)
                      ..++|+||++|++++++++++++|.|+.+.|
T Consensus        77 ~~~iivgvi~~Vi~Iv~~Iv~~~Cc~c~~~K  107 (179)
T PF13908_consen   77 ITGIIVGVICGVIAIVVLIVCFCCCCCCLYK  107 (179)
T ss_pred             eeeeeeehhhHHHHHHHhHhhheeccccccc
Confidence            4566677777766655444444443444444

>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein

Probab=96.20  E-value=0.0016  Score=65.52  Aligned_cols=31  Identities=23%  Similarity=0.391  Sum_probs=0.0

Q ss_pred             cceEEEeehhhHHHHHHHHHHHhhheeeccc
Q 020804           85 NLILLFGIGTGLLITAIISVLIICSCAFRRR  115 (321)
Q Consensus        85 S~iaIVGIaVG~vilLLL~VliLcLC~~Rrk  115 (321)
                      ...+++++++|.+++++|+++++++|.+||+
T Consensus       350 ~~~~~l~vVlgvavlivVv~viv~vc~~~rr  380 (439)
T PF02480_consen  350 RGAALLGVVLGVAVLIVVVGVIVWVCLRCRR  380 (439)
T ss_dssp             -------------------------------
T ss_pred             cccchHHHHHHHHHHHHHHHHHhheeeeehh
Confidence            3444444444555444444443334433333

gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.

>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]

Probab=95.95  E-value=0.007  Score=43.48  Aligned_cols=31  Identities=23%  Similarity=0.272  Sum_probs=13.9

Q ss_pred             ccceEE-EeehhhHHHHHHHHHHHhhheeecccC
Q 020804           84 SNLILL-FGIGTGLLITAIISVLIICSCAFRRRN  116 (321)
Q Consensus        84 lS~iaI-VGIaVG~vilLLL~VliLcLC~~Rrkk  116 (321)
                      .++.+| +|+++..++++++  ++++|+..|||+
T Consensus         8 ~~~vaIa~~VvVPV~vI~~v--l~~~l~~~~rR~   39 (40)
T PF08693_consen    8 SNTVAIAVGVVVPVGVIIIV--LGAFLFFWYRRK   39 (40)
T ss_pred             CceEEEEEEEEechHHHHHH--HHHHhheEEecc
Confidence            344444 4455555444333  334444444444

This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].

>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls

Probab=95.60  E-value=0.0057  Score=51.34  Aligned_cols=33  Identities=27%  Similarity=0.497  Sum_probs=15.2

Q ss_pred             HHHHHHHHHhhheeecccCCCCCCCcccCCcccc
Q 020804           98 ITAIISVLIICSCAFRRRNSKASPKETESGKWSC  131 (321)
Q Consensus        98 ilLLL~VliLcLC~~Rrkkkka~~~~~~~~~~~c  131 (321)
                      |++||+++++|+|..|||+||-..-+. -..|..
T Consensus         9 i~~i~l~~~~~~~~~rRR~r~G~~P~~-gt~w~~   41 (130)
T PF12273_consen    9 IVAILLFLFLFYCHNRRRRRRGLQPIY-GTRWMA   41 (130)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCCcC-CceecC
Confidence            344444455555555555555333222 235544

Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].

>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein)

Probab=94.90  E-value=0.022  Score=56.32  Aligned_cols=38  Identities=13%  Similarity=0.085  Sum_probs=30.4

Q ss_pred             CCCCCccceEEEeehhhHHHHHHHHHHHhhheeecccC
Q 020804           79 NKGKHSNLILLFGIGTGLLITAIISVLIICSCAFRRRN  116 (321)
Q Consensus        79 sKkKklS~iaIVGIaVG~vilLLL~VliLcLC~~Rrkk  116 (321)
                      .++..||+.||+||+|.++||+--+|-+||+.+.-|+|
T Consensus       359 ~n~s~LstgaIaGIsvavvvvVgglvGfLcWwf~crgk  396 (397)
T PF03302_consen  359 TNKSGLSTGAIAGISVAVVVVVGGLVGFLCWWFICRGK  396 (397)
T ss_pred             cccccccccceeeeeehhHHHHHHHHHHHhhheeeccc
Confidence            34578999999999999998877777777777766665

>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region

Probab=94.60  E-value=0.044  Score=49.12  Aligned_cols=47  Identities=19%  Similarity=0.300  Sum_probs=35.4

Q ss_pred             CCCCCCCccceEEEeehhhHHHHHHHHHHHhhheeecccCCCCCCCcc
Q 020804           77 TSNKGKHSNLILLFGIGTGLLITAIISVLIICSCAFRRRNSKASPKET  124 (321)
Q Consensus        77 sSsKkKklS~iaIVGIaVG~vilLLL~VliLcLC~~Rrkkkka~~~~~  124 (321)
                      -++|+|..-..++|||.+..+ +++++|+++|.+++||+.==.+.+..
T Consensus        43 lS~knknIVIGvVVGVGg~il-l~il~lvf~~c~r~kktdfidSdGkv   89 (154)
T PF04478_consen   43 LSSKNKNIVIGVVVGVGGPIL-LGILALVFIFCIRRKKTDFIDSDGKV   89 (154)
T ss_pred             CCcCCccEEEEEEecccHHHH-HHHHHhheeEEEecccCccccCCCcE
Confidence            456777888999999887666 55666688888888888877666553

The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].

>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5

Probab=94.55  E-value=0.0098  Score=57.44  Aligned_cols=25  Identities=8%  Similarity=0.125  Sum_probs=0.0

Q ss_pred             cccceeeceEEEEEEecCCCCCCCCCCC
Q 020804           30 FDSTLVGDYKLLNFTWFEPPAPSQAPLA   57 (321)
Q Consensus        30 lnssLfGDYkVINVTwF~P~~PSPCPt~   57 (321)
                      |...+-=+|+|.+|++.   +-..|-..
T Consensus        87 f~~am~pef~V~svsv~---~~G~C~~~  111 (290)
T PF05454_consen   87 FVRAMGPEFKVKSVSVI---PIGSCQDT  111 (290)
T ss_dssp             ----------------------------
T ss_pred             HHHHhCCCCceeEEEEE---EeeccCCC
Confidence            44556778999999995   33566653

5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.

>PF15345 TMEM51: Transmembrane protein 51

Probab=94.54  E-value=0.036  Score=52.46  Aligned_cols=40  Identities=18%  Similarity=0.323  Sum_probs=23.5

Q ss_pred             CCCCCccceEEEeehhhHHHHHHHHHHHhhheeecccCCCCCCC
Q 020804           79 NKGKHSNLILLFGIGTGLLITAIISVLIICSCAFRRRNSKASPK  122 (321)
Q Consensus        79 sKkKklS~iaIVGIaVG~vilLLL~VliLcLC~~Rrkkkka~~~  122 (321)
                      +.++|.+++|.|=|++|++    |+||-|||+.+.|||+++.+.
T Consensus        52 ~~ksKt~SVAyVLVG~Gv~----LLLLSICL~IR~KRr~rq~~e   91 (233)
T PF15345_consen   52 NLKSKTFSVAYVLVGSGVA----LLLLSICLSIRDKRRRRQGEE   91 (233)
T ss_pred             cccceeEEEEEehhhHHHH----HHHHHHHHHHHHHHHHhhccc
Confidence            4556666666653444332    223457888877777766665

>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A

Probab=94.10  E-value=0.019  Score=45.20  Aligned_cols=31  Identities=23%  Similarity=0.264  Sum_probs=13.3

Q ss_pred             EEeehhhHHHHHHHHHHHhhheeecccCCCC
Q 020804           89 LFGIGTGLLITAIISVLIICSCAFRRRNSKA  119 (321)
Q Consensus        89 IVGIaVG~vilLLL~VliLcLC~~Rrkkkka  119 (321)
                      |+++++++++++|++++++++|.+|++++|+
T Consensus         2 ii~~~~~g~~~ll~~v~~~~~~~rr~~~~~~   32 (75)
T PF14575_consen    2 IIASIIVGVLLLLVLVIIVIVCFRRCKYSKA   32 (75)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCCTT------
T ss_pred             EEehHHHHHHHHHHhheeEEEEEeeEcCCCC
Confidence            4445555555555554555555544444443

...

>PF06697 DUF1191: Protein of unknown function (DUF1191); InterPro: IPR010605 This family contains hypothetical plant proteins of unknown function

Probab=94.07  E-value=0.043  Score=53.01  Aligned_cols=31  Identities=19%  Similarity=0.319  Sum_probs=16.7

Q ss_pred             CCCccceEE-EeehhhHHHHHHHHHHHhhhee
Q 020804           81 GKHSNLILL-FGIGTGLLITAIISVLIICSCA  111 (321)
Q Consensus        81 kKklS~iaI-VGIaVG~vilLLL~VliLcLC~  111 (321)
                      +++.+.|.| +|.+.|.+++.||.++++|+.+
T Consensus       207 ~~~~~~W~iv~g~~~G~~~L~ll~~lv~~~vr  238 (278)
T PF06697_consen  207 RKRSWWWKIVVGVVGGVVLLGLLSLLVAMLVR  238 (278)
T ss_pred             CCcceeEEEEEEehHHHHHHHHHHHHHHhhhh
Confidence            556666664 5555666655555444444433

>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear

Probab=93.86  E-value=0.033  Score=52.60  Aligned_cols=32  Identities=22%  Similarity=0.317  Sum_probs=23.1

Q ss_pred             eEEEeehhhHHHHHHHHHHHhhheeecccCCC
Q 020804           87 ILLFGIGTGLLITAIISVLIICSCAFRRRNSK  118 (321)
Q Consensus        87 iaIVGIaVG~vilLLL~VliLcLC~~Rrkkkk  118 (321)
                      -.||-|+||+++++||+|++|.++..|||+++
T Consensus       270 ~~~vPIaVG~~La~lvlivLiaYli~Rrr~~~  301 (306)
T PF01299_consen  270 SDLVPIAVGAALAGLVLIVLIAYLIGRRRSRA  301 (306)
T ss_pred             cchHHHHHHHHHHHHHHHHHHhheeEeccccc
Confidence            35677999999877777777777765555544

Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane

>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences

Probab=93.77  E-value=0.015  Score=48.80  Aligned_cols=27  Identities=15%  Similarity=0.362  Sum_probs=15.3

Q ss_pred             hhhHHHHHHHHHHHhhheeecccCCCC
Q 020804           93 GTGLLITAIISVLIICSCAFRRRNSKA  119 (321)
Q Consensus        93 aVG~vilLLL~VliLcLC~~Rrkkkka  119 (321)
                      +.|+++++||+|+.+++||+.|.|..+
T Consensus        46 A~GGG~iLilIii~Lv~CC~~K~K~~~   72 (98)
T PF07204_consen   46 AAGGGLILILIIIALVCCCRAKHKTSA   72 (98)
T ss_pred             hccchhhhHHHHHHHHHHhhhhhhhHh
Confidence            445555666665666666655554333

p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].

>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains

Probab=93.62  E-value=0.043  Score=51.65  Aligned_cols=94  Identities=13%  Similarity=0.268  Sum_probs=52.1

Q ss_pred             ceEEEeehhhHHHHHHHHHHHhhheeec-ccCCCCCCC-cccCCcccccCC--Cce--------eEEEEeeCceeeecCC
Q 020804           86 LILLFGIGTGLLITAIISVLIICSCAFR-RRNSKASPK-ETESGKWSCESD--SEI--------RVLAEFKPGLITLDGH  153 (321)
Q Consensus        86 ~iaIVGIaVG~vilLLL~VliLcLC~~R-rkkkka~~~-~~~~~~~~c~~~--~~~--------~~~a~~~pg~~tldg~  153 (321)
                      ..++|||++|++.++||+++..+++++| +..++...+ -+|..||-=-..  .+.        +-..---=+.+|+...
T Consensus        37 ~~I~iaiVAG~~tVILVI~i~v~vR~CRq~~~k~g~QagKqe~~e~~tPn~~nkq~k~kk~kK~kspk~l~ln~vtie~~  116 (221)
T PF08374_consen   37 VKIMIAIVAGIMTVILVIFIVVLVRYCRQSPHKKGYQAGKQENSEWVTPNQENKQKKKKKKKKKKSPKPLLLNFVTIEES  116 (221)
T ss_pred             eeeeeeeecchhhhHHHHHHHHHHHHHhhccccchhhhcccccccccCCCccchhhcccccccccCCccccccccccccC
Confidence            5567788899888888777766666344 444444443 344667722111  111        1111111256788898


Q ss_pred             CCCcccccCccccccccCCCCCCCCC
Q 020804          154 ADDWEDIDGSEFSLLPALDPHAEHEY  179 (321)
Q Consensus       154 ~~dw~~i~~~~~~l~pal~~d~~~~y  179 (321)
                      -.||.+-++.+..|--.+..|.-..|
T Consensus       117 k~d~~~~~~~~~~~~L~~~~~~~~~~  142 (221)
T PF08374_consen  117 KPDDADNDQKSVTFDLELEEDSMGKY  142 (221)
T ss_pred             CcCccccccccceeccccCCCCcccc
Confidence            89998777766544334443333333

They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=93.19  E-value=0.096  Score=50.06  Aligned_cols=45  Identities=20%  Similarity=0.206  Sum_probs=28.2

Q ss_pred             CCCCccceEEEeehhhHH--HHHHHHHHHhhheeecccCCCCCCCcc
Q 020804           80 KGKHSNLILLFGIGTGLL--ITAIISVLIICSCAFRRRNSKASPKET  124 (321)
Q Consensus        80 KkKklS~iaIVGIaVG~v--ilLLL~VliLcLC~~Rrkkkka~~~~~  124 (321)
                      ++||+++..||.|..+.+  +++||.++-|.+.+.||||.+.++..+
T Consensus       220 ~~~~l~~G~VVlIslAiALG~v~ll~l~Gii~~~~~r~~~~~~~~p~  266 (281)
T PF12768_consen  220 GGKKLSRGFVVLISLAIALGTVFLLVLIGIILAYIRRRRQGYVPAPT  266 (281)
T ss_pred             ccccccceEEEEEehHHHHHHHHHHHHHHHHHHHHHhhhccCcCCCc
Confidence            457887777765555443  355555566666666777777776644

>PF06452 DUF1083: Domain of unknown function (DUF1083); InterPro: IPR010502 This entry represents the family 9 carbohydrate-binding module (CBD9), which exhibit an immunoglobulin-like beta-sandwich fold, with an additional beta-strand at the N terminus []

Probab=93.09  E-value=0.11  Score=43.61  Aligned_cols=54  Identities=19%  Similarity=0.387  Sum_probs=34.1

Q ss_pred             ecCCCC-CcccccCccccccccCCCCCCCCCCCCeeEEEEeecCccEEEEEEecCcee
Q 020804          150 LDGHAD-DWEDIDGSEFSLLPALDPHAEHEYKGGKMNVKALHDGHDVYFLLQVDGEYV  206 (321)
Q Consensus       150 ldg~~~-dw~~i~~~~~~l~pal~~d~~~~y~~g~~~vk~~hdg~~~ffll~v~g~y~  206 (321)
                      |||..+ .|+..+  .+.+.....+..... +.=+.+||+++|.+.+||+++|--+.-
T Consensus         1 IDG~~d~~W~~a~--~~~~~~~~~~~~~~~-~~~s~~~~~~wD~~~LY~~~~v~D~~~   55 (185)
T PF06452_consen    1 IDGKLDAEWKGAP--PITIFYQWWGSDWSG-EDLSTRVRLLWDDENLYFAFEVTDDTL   55 (185)
T ss_dssp             SSSS--GGGGGS---EEE--EEEES-T--T-TS-EEEEEEEE-SSEEEEEEEEE-SS-
T ss_pred             CCCcccchhcCCc--eEeeeeeecccccCC-CCccEEEEEEEeCCeEEEEEEEECCcc
Confidence            699992 499998  445555555554444 667899999999999999999987773

Bacterial extracellular cellulases and hemicellulases are involved in the hydrolysis of the major structural polysaccharides of plant cell walls. These are usually modular enzymes that contain catalytic and non-catalytic domains. The CBD9 domain binds to cellulose, xylan, as well as to a range of soluble di- and mono-saccharides, and is found in cellulose- and xylan-degrading enzymes, such as endo-1,4-beta-xylanase (3.2.1.8 from EC) [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030246 carbohydrate binding, 0016052 carbohydrate catabolic process; PDB: 1I82_A 1I8A_A 1I8U_A.

>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins

Probab=92.77  E-value=0.23  Score=44.73  Aligned_cols=33  Identities=21%  Similarity=0.086  Sum_probs=15.7

Q ss_pred             ehhhHHHHHHHHHHHhhheeecccCCCCCCCcc
Q 020804           92 IGTGLLITAIISVLIICSCAFRRRNSKASPKET  124 (321)
Q Consensus        92 IaVG~vilLLL~VliLcLC~~Rrkkkka~~~~~  124 (321)
                      +++|..+++++++++-.+..+||+||.+.|+=.
T Consensus       100 Vl~g~s~l~i~yfvir~~R~r~~~rktRkYgvl  132 (163)
T PF06679_consen  100 VLVGLSALAILYFVIRTFRLRRRNRKTRKYGVL  132 (163)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccccccceeeccc
Confidence            344444455555555544443434443555433

Their function is unknown.

>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]

Probab=92.72  E-value=0.082  Score=56.28  Aligned_cols=37  Identities=19%  Similarity=0.333  Sum_probs=23.2

Q ss_pred             CCCCCccceEEEeehhhHHHHHHHHHHHhhheeecccC
Q 020804           79 NKGKHSNLILLFGIGTGLLITAIISVLIICSCAFRRRN  116 (321)
Q Consensus        79 sKkKklS~iaIVGIaVG~vilLLL~VliLcLC~~Rrkk  116 (321)
                      .+....|+|+|||+++-.++++| +|+||++|++|++|
T Consensus       262 ~~s~~~NlWII~gVlvPv~vV~~-Iiiil~~~LCRk~K  298 (684)
T PF12877_consen  262 AKSPPNNLWIIAGVLVPVLVVLL-IIIILYWKLCRKNK  298 (684)
T ss_pred             CCCCCCCeEEEehHhHHHHHHHH-HHHHHHHHHhcccc
Confidence            35566789999998766665444 44555555555443

In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.

>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]

Probab=92.52  E-value=0.037  Score=43.37  Aligned_cols=37  Identities=22%  Similarity=0.353  Sum_probs=1.9

Q ss_pred             EEeehhhHHHHHHHHHHHhhheeec-ccCCCCCCCccc
Q 020804           89 LFGIGTGLLITAIISVLIICSCAFR-RRNSKASPKETE  125 (321)
Q Consensus        89 IVGIaVG~vilLLL~VliLcLC~~R-rkkkka~~~~~~  125 (321)
                      ++|+++|+++.+++++++|.|+..| |||-.-+++-.|
T Consensus        11 laavIaG~Vvgll~ailLIlf~iyR~rkkdEGSY~l~e   48 (64)
T PF01034_consen   11 LAAVIAGGVVGLLFAILLILFLIYRMRKKDEGSYDLDE   48 (64)
T ss_dssp             --------------------------S------SS--S
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCCC
Confidence            3455555555444443433333333 444444554444

Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.

>PF13908 Shisa: Wnt and FGF inhibitory regulator

Probab=92.03  E-value=0.14  Score=44.90  Aligned_cols=41  Identities=24%  Similarity=0.401  Sum_probs=29.4

Q ss_pred             ceEEEeehhhHHH-HHHHHHHHhhheeecccCCCCCCCcccC
Q 020804           86 LILLFGIGTGLLI-TAIISVLIICSCAFRRRNSKASPKETES  126 (321)
Q Consensus        86 ~iaIVGIaVG~vi-lLLL~VliLcLC~~Rrkkkka~~~~~~~  126 (321)
                      +.++++|++|+++ +++|+++++|+|+.+-.+.|+....++.
T Consensus        74 ~~~~~~iivgvi~~Vi~Iv~~Iv~~~Cc~c~~~K~~~~~~~~  115 (179)
T PF13908_consen   74 IYFITGIIVGVICGVIAIVVLIVCFCCCCCCLYKKCRSQRPN  115 (179)
T ss_pred             ccceeeeeeehhhHHHHHHHhHhhheeccccccccccCcccc
Confidence            5678889999988 4445555667777788888876555553

>cd00005 CBM9 Family 9 carbohydrate-binding module (CBM), plays a role in microbial degradation of cellulose and hemicellulose found in plants; previously called cellulose-binding domain; the binding sites of the CBMs for which structures have been determined are of two general types: flat surfaces comprising predominantly aromatic residues tryptophan and tyrosine and extended shallow grooves; this domain frequently occurs in tandem

Probab=91.92  E-value=0.25  Score=43.71  Aligned_cols=52  Identities=29%  Similarity=0.512  Sum_probs=38.4

Q ss_pred             eCceeeecCCCCC-cccccCccccccccCCCCCCCCCCCCeeEEEEeecCccEEEEEEec
Q 020804          144 KPGLITLDGHADD-WEDIDGSEFSLLPALDPHAEHEYKGGKMNVKALHDGHDVYFLLQVD  202 (321)
Q Consensus       144 ~pg~~tldg~~~d-w~~i~~~~~~l~pal~~d~~~~y~~g~~~vk~~hdg~~~ffll~v~  202 (321)
                      ..|.|+|||..++ |+..+-..-  +-...|.     ++=+-+||+++|...+|++.+|-
T Consensus         6 ~~~~p~IDG~~de~W~~a~~~~~--~~~~~~~-----~~~~t~~k~lwDd~~LYv~~~v~   58 (186)
T cd00005           6 KYGTPVIDGQVDDIWKKAKPLET--NTYVEGT-----SGATATVRVLWDEKNLYVLAEVK   58 (186)
T ss_pred             ccCCCeecCccchhHhhCcceee--eeEecCC-----CCcceEEEEEEcCCcEEEEEEEE
Confidence            4678999999999 998765432  1122332     33568999999999999999964

>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []

Probab=91.86  E-value=0.1  Score=37.33  Aligned_cols=7  Identities=14%  Similarity=0.320  Sum_probs=2.6

Q ss_pred             ehhhHHH
Q 020804           92 IGTGLLI   98 (321)
Q Consensus        92 IaVG~vi   98 (321)
                      |++|.++
T Consensus         8 IIv~V~v   14 (38)
T PF02439_consen    8 IIVAVVV   14 (38)
T ss_pred             HHHHHHH
Confidence            3333333

This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.

>PF07213 DAP10: DAP10 membrane protein; InterPro: IPR009861 This family consists of several mammalian DAP10 membrane proteins

Probab=91.01  E-value=0.16  Score=41.34  Aligned_cols=39  Identities=26%  Similarity=0.275  Sum_probs=29.5

Q ss_pred             CCCCccceEEEeehhhHHHHHHHHHHHhhheeecccCCC
Q 020804           80 KGKHSNLILLFGIGTGLLITAIISVLIICSCAFRRRNSK  118 (321)
Q Consensus        80 KkKklS~iaIVGIaVG~vilLLL~VliLcLC~~Rrkkkk  118 (321)
                      .=-..+..+++||++|-+++-||+++..+.|.+.|+|++
T Consensus        27 ~C~~ls~g~LaGiV~~D~vlTLLIv~~vy~car~r~r~~   65 (79)
T PF07213_consen   27 GCYPLSPGLLAGIVAADAVLTLLIVLVVYYCARPRRRPT   65 (79)
T ss_pred             CccccCHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCc
Confidence            344567889999999999999988887777775444433

In activated mouse natural killer (NK) cells, the NKG2D receptor associates with two intracellular adaptors, DAP10 and DAP12, which trigger phosphatidyl inositol 3 kinase (PI3K) and Syk family protein tyrosine kinases, respectively. It has been suggested that the DAP10-PI3K pathway is sufficient to initiate NKG2D-mediated killing of target cells [].

>PF15069 FAM163: FAM163 family

Probab=89.79  E-value=0.36  Score=42.99  Aligned_cols=26  Identities=19%  Similarity=0.402  Sum_probs=14.9

Q ss_pred             ceEEEeehhhHHHHHHHHHHHhhheee
Q 020804           86 LILLFGIGTGLLITAIISVLIICSCAF  112 (321)
Q Consensus        86 ~iaIVGIaVG~vilLLL~VliLcLC~~  112 (321)
                      +++|.|.++..+|||+|+ ++||.|++
T Consensus         5 TvVItGgILAtVILLcII-aVLCYCRL   30 (143)
T PF15069_consen    5 TVVITGGILATVILLCII-AVLCYCRL   30 (143)
T ss_pred             eEEEechHHHHHHHHHHH-HHHHHHhh
Confidence            556666555555444444 56777763

>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ]

Probab=89.22  E-value=0.15  Score=46.30  Aligned_cols=27  Identities=22%  Similarity=0.517  Sum_probs=18.8

Q ss_pred             ehhhHHHHHHHHHHHhhheeecccCCC
Q 020804           92 IGTGLLITAIISVLIICSCAFRRRNSK  118 (321)
Q Consensus        92 IaVG~vilLLL~VliLcLC~~Rrkkkk  118 (321)
                      |.++.+++++++++++.||-+||||+-
T Consensus        34 ILiaIvVliiiiivli~lcssRKkKaa   60 (189)
T PF05568_consen   34 ILIAIVVLIIIIIVLIYLCSSRKKKAA   60 (189)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence            677888777777777777775544443

>PF10873 DUF2668: Protein of unknown function (DUF2668); InterPro: IPR022640 Members in this family of proteins are annotated as cysteine and tyrosine-rich protein 1, however currently no function is known []

Probab=89.08  E-value=0.38  Score=43.30  Aligned_cols=32  Identities=22%  Similarity=0.401  Sum_probs=22.4

Q ss_pred             CCCccceEEEeehhhHHHHHHHHH-HHhhheee
Q 020804           81 GKHSNLILLFGIGTGLLITAIISV-LIICSCAF  112 (321)
Q Consensus        81 kKklS~iaIVGIaVG~vilLLL~V-liLcLC~~  112 (321)
                      ..-++..||.||+.|.++++.++. +.||+|..
T Consensus        55 ~~~lsgtAIaGIVfgiVfimgvva~i~icvCmc   87 (155)
T PF10873_consen   55 GDVLSGTAIAGIVFGIVFIMGVVAGIAICVCMC   87 (155)
T ss_pred             ccccccceeeeeehhhHHHHHHHHHHHHHHhhh
Confidence            445679999999999998766553 34455544

>PF15102 TMEM154: TMEM154 protein family

Probab=88.68  E-value=0.63  Score=41.55  Aligned_cols=9  Identities=11%  Similarity=-0.016  Sum_probs=3.9

Q ss_pred             heeecccCC
Q 020804          109 SCAFRRRNS  117 (321)
Q Consensus       109 LC~~Rrkkk  117 (321)
                      .+++|.|.+
T Consensus        82 ~kRkr~K~~   90 (146)
T PF15102_consen   82 YKRKRTKQE   90 (146)
T ss_pred             EeecccCCC
Confidence            344444443

>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein

Probab=86.34  E-value=0.22  Score=50.47  Aligned_cols=40  Identities=18%  Similarity=0.209  Sum_probs=0.0

Q ss_pred             CCCCCccceEEEeehhhHHHHHHHHHHHhhheeecccCCC
Q 020804           79 NKGKHSNLILLFGIGTGLLITAIISVLIICSCAFRRRNSK  118 (321)
Q Consensus        79 sKkKklS~iaIVGIaVG~vilLLL~VliLcLC~~Rrkkkk  118 (321)
                      ...+....+++|.+++++++++++++++.+.|++||++++
T Consensus       347 ~~~~~~~~l~vVlgvavlivVv~viv~vc~~~rrrR~~~~  386 (439)
T PF02480_consen  347 RTSRGAALLGVVLGVAVLIVVVGVIVWVCLRCRRRRRQRD  386 (439)
T ss_dssp             ----------------------------------------
T ss_pred             CCCcccchHHHHHHHHHHHHHHHHHhheeeeehhcccccc
Confidence            3444454444443455555566666677778888877776

gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.

>COG3889 Predicted solute binding protein [General function prediction only]

Probab=86.17  E-value=0.74  Score=50.33  Aligned_cols=24  Identities=8%  Similarity=-0.139  Sum_probs=10.1

Q ss_pred             EEEeehhhHHHHHHHHHHHhhhee
Q 020804           88 LLFGIGTGLLITAIISVLIICSCA  111 (321)
Q Consensus        88 aIVGIaVG~vilLLL~VliLcLC~  111 (321)
                      ...|.+.|.++++++++.+-+|++
T Consensus       845 tt~~~i~g~i~iiv~LaAla~lLr  868 (872)
T COG3889         845 TTGGGICGPIVIIVGLAALALLLR  868 (872)
T ss_pred             ccccccchHHHHHHHHHHHHHHHH
Confidence            344455555543333333333333

>PF14610 DUF4448: Protein of unknown function (DUF4448)

Probab=86.04  E-value=2.4  Score=37.60  Aligned_cols=12  Identities=8%  Similarity=0.086  Sum_probs=7.2

Q ss_pred             eeecccceeece
Q 020804           27 KVHFDSTLVGDY   38 (321)
Q Consensus        27 KVqlnssLfGDY   38 (321)
                      .+++++..+.+=
T Consensus        86 ~~~i~~~wl~~~   97 (189)
T PF14610_consen   86 PWTIDPSWLNGE   97 (189)
T ss_pred             EEEECHHHhCCC
Confidence            356666666644

>PHA03265 envelope glycoprotein D; Provisional

Probab=85.71  E-value=1.3  Score=44.84  Aligned_cols=12  Identities=25%  Similarity=0.443  Sum_probs=6.6

Q ss_pred             CCCCCCCCCCCC
Q 020804           47 EPPAPSQAPLAS   58 (321)
Q Consensus        47 ~P~~PSPCPt~s   58 (321)
                      +|++|.--|++.
T Consensus       277 ~P~~~~~~~~~~  288 (402)
T PHA03265        277 RPVPPDNHPGFD  288 (402)
T ss_pred             CCCCCCCCCCcc
Confidence            456665555544

>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins

Probab=85.56  E-value=1.1  Score=41.67  Aligned_cols=69  Identities=19%  Similarity=0.160  Sum_probs=38.1

Q ss_pred             EEEeehhhH-HHHHHHHHHHhhheeecccCCCCCCCcccCCccc---ccCCCce---eEEEEeeCceeeecCCCCC
Q 020804           88 LLFGIGTGL-LITAIISVLIICSCAFRRRNSKASPKETESGKWS---CESDSEI---RVLAEFKPGLITLDGHADD  156 (321)
Q Consensus        88 aIVGIaVG~-vilLLL~VliLcLC~~Rrkkkka~~~~~~~~~~~---c~~~~~~---~~~a~~~pg~~tldg~~~d  156 (321)
                      ++|+|++-+ +++|+++++.+++|..||..|+.-..++|+-...   |-++-..   -.+.|-+-=...|+|-+.|
T Consensus       101 ~lI~lv~~g~~lLla~~~~~~Y~~~~Rrs~~~~~~rl~Ee~~~vEng~h~n~~l~v~~~~~E~qeK~~~~Ng~~~e  176 (202)
T PF06365_consen  101 TLIALVTSGSFLLLAILLGAGYCCHQRRSWSKKGQRLGEELYTVENGYHDNPTLSVAESQPEMQEKKPSLNGEAQE  176 (202)
T ss_pred             EEEehHHhhHHHHHHHHHHHHHHhhhhccCCcchhhhccCceecccCccCCcccccCCCCcccccccccccCCccc
Confidence            555565544 4444444444455555666667677777665443   3334333   3444544333888888876

The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].

>PF15065 NCU-G1: Lysosomal transcription factor, NCU-G1

Probab=84.98  E-value=0.26  Score=48.83  Aligned_cols=36  Identities=19%  Similarity=0.306  Sum_probs=22.0

Q ss_pred             CccceEEEeehhhHHH-HHHHHHHHhhheeecccCCC
Q 020804           83 HSNLILLFGIGTGLLI-TAIISVLIICSCAFRRRNSK  118 (321)
Q Consensus        83 klS~iaIVGIaVG~vi-lLLL~VliLcLC~~Rrkkkk  118 (321)
                      ++|..+|+-|++|-++ ++++++-.|++|.+|+|+||
T Consensus       314 ~~S~lvi~i~~vgLG~P~l~li~Ggl~v~~~r~r~~~  350 (350)
T PF15065_consen  314 SFSPLVIMIMAVGLGVPLLLLILGGLYVCLRRRRKRK  350 (350)
T ss_pred             chhHHHHHHHHHHhhHHHHHHHHhhheEEEeccccCC
Confidence            3445555446666666 44455567777777776665

>TIGR01478 STEVOR variant surface antigen, stevor family

Probab=83.58  E-value=0.58  Score=45.85  Aligned_cols=32  Identities=28%  Similarity=0.355  Sum_probs=24.0

Q ss_pred             hhhHHHHHHHHHHHhhheeecccCCCCCCCcc
Q 020804           93 GTGLLITAIISVLIICSCAFRRRNSKASPKET  124 (321)
Q Consensus        93 aVG~vilLLL~VliLcLC~~Rrkkkka~~~~~  124 (321)
                      .+.++|+++|.|++|.|-.|-.||||.+-.||
T Consensus       262 giaalvllil~vvliiLYiWlyrrRK~swkhe  293 (295)
T TIGR01478       262 GIAALVLIILTVVLIILYIWLYRRRKKSWKHE  293 (295)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence            34556677777777777777788888888886

This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.

>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world

Probab=83.58  E-value=0.27  Score=47.81  Aligned_cols=19  Identities=21%  Similarity=0.317  Sum_probs=9.5

Q ss_pred             eEEEeehhhHHHHHHHHHH
Q 020804           87 ILLFGIGTGLLITAIISVL  105 (321)
Q Consensus        87 iaIVGIaVG~vilLLL~Vl  105 (321)
                      .+|++.++..++++||+|+
T Consensus       256 t~I~aSiiaIliIVLIMvI  274 (299)
T PF02009_consen  256 TAIIASIIAILIIVLIMVI  274 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            4455555555554444433

Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].

>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2

Probab=83.49  E-value=0.62  Score=38.98  Aligned_cols=37  Identities=19%  Similarity=0.204  Sum_probs=17.1

Q ss_pred             cceEEEeehhhHHHHHHHHH--HHhhheeecccCCCCCC
Q 020804           85 NLILLFGIGTGLLITAIISV--LIICSCAFRRRNSKASP  121 (321)
Q Consensus        85 S~iaIVGIaVG~vilLLL~V--liLcLC~~Rrkkkka~~  121 (321)
                      +.+.-+|+-.+.+++++|++  +|+..|++|||.||--|
T Consensus        28 n~~~~Lgm~~lvI~~iFil~VilwfvCC~kRkrsRrPIY   66 (94)
T PF05393_consen   28 NNWPNLGMWFLVICGIFILLVILWFVCCKKRKRSRRPIY   66 (94)
T ss_pred             CCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhccCCcc
Confidence            34444555555555443333  34444444455444433

; GO: 0016021 integral to membrane

>PLN03150 hypothetical protein; Provisional

Probab=83.05  E-value=1.2  Score=46.35  Aligned_cols=31  Identities=19%  Similarity=0.186  Sum_probs=18.3

Q ss_pred             ccceEEEeehhhHHHHHHHHHHHhhheeecc
Q 020804           84 SNLILLFGIGTGLLITAIISVLIICSCAFRR  114 (321)
Q Consensus        84 lS~iaIVGIaVG~vilLLL~VliLcLC~~Rr  114 (321)
                      .+...++++++|++++++++++.+++|++||
T Consensus       541 ~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~r  571 (623)
T PLN03150        541 LSVGAKIGIAFGVSVAFLFLVICAMCWWKRR  571 (623)
T ss_pred             CCCceEEEEEhHHHHHHHHHHHHHhhheeeh
Confidence            3456677788888876555544444444333

>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins

Probab=82.89  E-value=0.38  Score=42.23  Aligned_cols=52  Identities=13%  Similarity=0.017  Sum_probs=2.5

Q ss_pred             ccceEEEeehhhHHHHHHHHHHHhhheeecccCCCCCCCcccCCcccccCCC
Q 020804           84 SNLILLFGIGTGLLITAIISVLIICSCAFRRRNSKASPKETESGKWSCESDS  135 (321)
Q Consensus        84 lS~iaIVGIaVG~vilLLL~VliLcLC~~Rrkkkka~~~~~~~~~~~c~~~~  135 (321)
                      ...+++|+-.++++++++.++..+...++.|+|+|=.+--||-|.-.|.+-.
T Consensus        75 ~~l~~pi~~sal~v~lVl~llsg~lv~rrcrrr~~~ttPIeeTgg~~~~~~~  126 (129)
T PF12191_consen   75 FPLLWPILGSALSVVLVLALLSGFLVWRRCRRREKFTTPIEETGGEGCPGVA  126 (129)
T ss_dssp             SSSS------------------------------------------------
T ss_pred             cceehhhhhhHHHHHHHHHHHHHHHHHhhhhccccCCCcccccCCCCCccee
Confidence            5567777677777765555544444445456666666677777777887654

Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.

>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]

Probab=82.86  E-value=0.38  Score=37.81  Aligned_cols=31  Identities=16%  Similarity=0.236  Sum_probs=0.9

Q ss_pred             ccceEEEeehhhHHHHHHHHHHHhhheeecc
Q 020804           84 SNLILLFGIGTGLLITAIISVLIICSCAFRR  114 (321)
Q Consensus        84 lS~iaIVGIaVG~vilLLL~VliLcLC~~Rr  114 (321)
                      .-..+|+|+++|.+++++|+++++.=+++|.
T Consensus        10 vlaavIaG~Vvgll~ailLIlf~iyR~rkkd   40 (64)
T PF01034_consen   10 VLAAVIAGGVVGLLFAILLILFLIYRMRKKD   40 (64)
T ss_dssp             ---------------------------S---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            3467788999999988888877777778873

Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.

>PF05808 Podoplanin: Podoplanin; InterPro: IPR008783 This family consists of several mammalian podoplanin-like proteins which are thought to control specifically the unique shape of podocytes []

Probab=82.50  E-value=0.4  Score=43.44  Aligned_cols=23  Identities=22%  Similarity=0.251  Sum_probs=0.0

Q ss_pred             CCCccceEEEeehhhHHHHHHHH
Q 020804           81 GKHSNLILLFGIGTGLLITAIIS  103 (321)
Q Consensus        81 kKklS~iaIVGIaVG~vilLLL~  103 (321)
                      +..++++++|||+||.++.+.++
T Consensus       123 k~GL~T~tLVGIIVGVLlaIG~i  145 (162)
T PF05808_consen  123 KDGLSTVTLVGIIVGVLLAIGFI  145 (162)
T ss_dssp             -----------------------
T ss_pred             cCCcceeeeeeehhhHHHHHHHH
Confidence            77889999999999999844444

; GO: 0016021 integral to membrane; PDB: 3IET_X.

>PF05083 LST1: LST-1 protein; InterPro: IPR007775 B144/LST1 is a gene encoded in the human major histocompatibility complex that produces multiple forms of alternatively spliced mRNA and encodes peptides fewer than 100 amino acids in length

Probab=82.13  E-value=0.56  Score=37.80  Aligned_cols=25  Identities=28%  Similarity=0.558  Sum_probs=19.6

Q ss_pred             hhHHHHHHHHHHHhhheeecccCCC
Q 020804           94 TGLLITAIISVLIICSCAFRRRNSK  118 (321)
Q Consensus        94 VG~vilLLL~VliLcLC~~Rrkkkk  118 (321)
                      +|++.++.|.++.+|||.+.||+++
T Consensus         1 lggllll~vvll~~clC~lsrRvkr   25 (74)
T PF05083_consen    1 LGGLLLLAVVLLSACLCRLSRRVKR   25 (74)
T ss_pred             CcchhhHHHHHHHHHHHHHHhhhhh
Confidence            3677778888889999999777664

B144/LST1 is strongly expressed in dendritic cells. Transfection of B144/LST1 into a variety of cells induces morphologic changes including the production of long, thin filopodia []. A possible role in modulating immune responses. Induces morphological changes including production of filopodia and microspikes when overexpressed in a variety of cell types and may be involved in dendritic cell maturation. Isoform 1 and isoform 2 have an inhibitory effect on lymphocyte proliferation [, ]. ; GO: 0000902 cell morphogenesis, 0006955 immune response, 0016020 membrane

>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5

Probab=81.61  E-value=0.45  Score=46.21  Aligned_cols=15  Identities=40%  Similarity=0.855  Sum_probs=0.0

Q ss_pred             HHHHHHhhheeeccc
Q 020804          101 IISVLIICSCAFRRR  115 (321)
Q Consensus       101 LL~VliLcLC~~Rrk  115 (321)
                      ||+.+++|+|.+|||
T Consensus       160 LIA~iIa~icyrrkR  174 (290)
T PF05454_consen  160 LIAGIIACICYRRKR  174 (290)
T ss_dssp             ---------------
T ss_pred             HHHHHHHHHhhhhhh
Confidence            334344555544333

5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.

>PTZ00370 STEVOR; Provisional

Probab=80.70  E-value=0.67  Score=45.46  Aligned_cols=31  Identities=26%  Similarity=0.289  Sum_probs=23.2

Q ss_pred             hhHHHHHHHHHHHhhheeecccCCCCCCCcc
Q 020804           94 TGLLITAIISVLIICSCAFRRRNSKASPKET  124 (321)
Q Consensus        94 VG~vilLLL~VliLcLC~~Rrkkkka~~~~~  124 (321)
                      +.++|+++|.|++|.|--|-.||||.+-.||
T Consensus       259 iaalvllil~vvliilYiwlyrrRK~swkhe  289 (296)
T PTZ00370        259 IAALVLLILAVVLIILYIWLYRRRKNSWKHE  289 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcchhHHH
Confidence            3456677777777777777788888888886

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	321
2ivf_C	214	Ethylbenzene dehydrogenase gamma-subunit; anaerobi	3e-18

>2ivf_C Ethylbenzene dehydrogenase gamma-subunit; anaerobic hydrocarbon degradation, MOCO, Fe/S cluster, MO- B enzyme, DMSO reductase family; HET: MES MGD MD1 HEM; 1.88A {Aromatoleum aromaticum} Length = 214

 Score = 81.0 bits (199), Expect = 3e-18
 Identities = 23/142 (16%), Positives = 44/142 (30%), Gaps = 24/142 (16%)

Query: 148 ITLDGHADDWEDIDGSEFSLLPA-------LDPHAEHEYKGG---KMNVKALHDGHDVYF 197
           + LD  A  W   + + F + P        + P        G   +++V ALH+G  +  
Sbjct: 12  LLLDLDAPIWAGAESTTFEMFPTPLVMVKEVSPFLALSEGHGVIKRLDVAALHNGSMIAL 71

Query: 198 LLQ-VDGEYVYSKGENTRCPSIALMFQIGEDATYHNMGGCKEGIGSCTSKTCKGHEVDIM 256
            L+    ++      N+    +  MF +   A    MG               G  V+  
Sbjct: 72  RLKWASEKHDKIVDLNSFVDGVGAMFPVARGAQAVTMGA-------------TGRPVNAW 118

Query: 257 HFSIGSAIPGRLYGGNPVDNSE 278
           ++   +  P  +          
Sbjct: 119 YWKANANEPMEIVAEGFSAVRR 140

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	321
2ivf_C	214	Ethylbenzene dehydrogenase gamma-subunit; anaerobi	99.85
2k1k_A	38	Ephrin type-A receptor 1; EPHA1, receptor tyrosine	96.84
2ks1_B	44	Epidermal growth factor receptor; ERBB1, ERBB2, tr	96.13
1i82_A	189	Xylanase A, endo-1,4-beta-xylanase A; cellobiose c	96.09
2l2t_A	44	Receptor tyrosine-protein kinase ERBB-4; transmemb	95.47
2jwa_A	44	Receptor tyrosine-protein kinase ERBB-2; transmemb	95.29
1q55_A	880	EP-cadherin, C-cadherin; trans interaction, desmos	92.36
2k9y_A	41	Ephrin type-A receptor 2; receptor tyrosine kinase	92.26
2knc_A	54	Integrin alpha-IIB; transmembrane signaling, prote	90.17
2l8s_A	54	Integrin alpha-1; transmembrane region, detergent	88.04
2klu_A	70	T-cell surface glycoprotein CD4; cell membrane, di	86.27
2l34_A	33	TYRO protein tyrosine kinase-binding protein; immu	82.72
2k1a_A	42	Integrin alpha-IIB; single-PASS transmembrane segm	80.75

>2ivf_C Ethylbenzene dehydrogenase gamma-subunit; anaerobic hydrocarbon degradation, MOCO, Fe/S cluster, MO- B enzyme, DMSO reductase family; HET: MES MGD MD1 HEM; 1.88A {Aromatoleum aromaticum}

Probab=99.85  E-value=3.7e-22  Score=179.82  Aligned_cols=119  Identities=21%  Similarity=0.305  Sum_probs=107.7

Q ss_pred             eeeecCCCCCcccccCcccccccc-----CCCCC-----CCCCCCCeeEEEEeecCccEEEEEEecCceeeecCC-cccC
Q 020804          147 LITLDGHADDWEDIDGSEFSLLPA-----LDPHA-----EHEYKGGKMNVKALHDGHDVYFLLQVDGEYVYSKGE-NTRC  215 (321)
Q Consensus       147 ~~tldg~~~dw~~i~~~~~~l~pa-----l~~d~-----~~~y~~g~~~vk~~hdg~~~ffll~v~g~y~~~~~~-~~~c  215 (321)
                      .|++|+++.+|++++..+++|.|+     +|+++     ..++...+|+|||+|||++|||||+.+.+|++...+ ...|
T Consensus        11 ~~~~d~~~~~W~~ap~~~v~L~~~~~~~p~~~~~~~~~~~~~~~~~~v~VkAa~dg~~i~f~l~W~D~t~~~~~~~~~f~   90 (214)
T 2ivf_C           11 ELLLDLDAPIWAGAESTTFEMFPTPLVMVKEVSPFLALSEGHGVIKRLDVAALHNGSMIALRLKWASEKHDKIVDLNSFV   90 (214)
T ss_dssp             HHHTCTTCHHHHTSCEEEEECEECCGGGGTTTCTTGGGCCSCCCCCEEEEEEEECSSEEEEEEEEECCCCCSCCSTTCCC
T ss_pred             cccCCCChHHHhcCCceEEEccCCccccccccccccccccCCCCceEEEEEEEECCCeEEEEEEECCCCCCccccccccC
Confidence            568999999999999999999999     88887     788999999999999999999999999999998777 7779


Q ss_pred             CceeeeeeecCCceeeecCCCCCCCCcccccccCCceeeEEEEEeccccCceecCCCCCCCCCCCCCCcccccee
Q 020804          216 PSIALMFQIGEDATYHNMGGCKEGIGSCTSKTCKGHEVDIMHFSIGSAIPGRLYGGNPVDNSEGNGGDRFGHLVD  290 (321)
Q Consensus       216 ~svalmf~~g~~a~y~nmggc~~~~~~c~~~~c~g~evdi~hf~i~~aipgr~yg~n~~d~~~g~g~d~~g~l~d  290 (321)
                      ..||+||++|++++|+.||.             .|++|||+||..+.         |.++|..++|   ||++.+
T Consensus        91 D~vAvmfp~~~~~~~~~MG~-------------~~~~vdiw~Wka~~---------~~~~~~~a~G---fgs~~~  140 (214)
T 2ivf_C           91 DGVGAMFPVARGAQAVTMGA-------------TGRPVNAWYWKANA---------NEPMEIVAEG---FSAVRR  140 (214)
T ss_dssp             CEEEEEEESSTTCCGGGTCB-------------TTBCEEEEEEETTC---------SSCEEEEESS---TTSEEE
T ss_pred             ceEEEEeEcCCCCcccccCC-------------CCcEEEEEEEecCC---------CcceeeccCC---cccccc
Confidence            99999999999999999994             67999999999875         3577777766   999887

>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A

Probab=96.84  E-value=0.00021  Score=49.18  Aligned_cols=32  Identities=16%  Similarity=0.059  Sum_probs=22.9

Q ss_pred             CCCCccceEEEeehhhHHHHHHHHHHHhhhee
Q 020804           80 KGKHSNLILLFGIGTGLLITAIISVLIICSCA  111 (321)
Q Consensus        80 KkKklS~iaIVGIaVG~vilLLL~VliLcLC~  111 (321)
                      .++.+|..+|.||++|.++.+++++.+++|+.
T Consensus         4 ~~~~ls~GaIAGiVvG~v~gv~li~~l~~~~~   35 (38)
T 2k1k_A            4 VSRGLTGGEIVAVIFGLLLGAALLLGILVFRS   35 (38)
T ss_dssp             SSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCceeeeehHHHHHHHHHHHHHHHHe
Confidence            34567899999999999986655545444443

>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}

Probab=96.13  E-value=0.0014  Score=46.62  Aligned_cols=34  Identities=15%  Similarity=-0.008  Sum_probs=16.8

Q ss_pred             cceEEEeehhhHHHHH-HHHHHHhhheeecccCCC
Q 020804           85 NLILLFGIGTGLLITA-IISVLIICSCAFRRRNSK  118 (321)
Q Consensus        85 S~iaIVGIaVG~vilL-LL~VliLcLC~~Rrkkkk  118 (321)
                      +..+|++-++|+++++ ++++++.++.++||++||
T Consensus         9 ~~~~IA~gVVgGv~~~~ii~~~~~~~~RRr~~~~k   43 (44)
T 2ks1_B            9 KIPSIATGMVGALLLLLVVALGIGLFMRRRHIVRK   43 (44)
T ss_dssp             CSSSSTHHHHHHHHHHHHHHHHHHHHHHTTTCCSC
T ss_pred             CcceEEeehhHHHHHHHHHHHHHHHHhhhhHhhcc
Confidence            3455666666655543 333334444444444444

>1i82_A Xylanase A, endo-1,4-beta-xylanase A; cellobiose complex, hydrolase; HET: BGC; 1.90A {Thermotoga maritima} SCOP: b.1.9.2 PDB: 1i8a_A* 1i8u_A

Probab=96.09  E-value=0.0073  Score=50.55  Aligned_cols=90  Identities=19%  Similarity=0.272  Sum_probs=55.8

Q ss_pred             EEEeeCceeeecCCCCC-cccccCccccccccCCCCCCCCCCCCeeEEEEeecCccEEEEEEecCceeeecC-CcccCCc
Q 020804          140 LAEFKPGLITLDGHADD-WEDIDGSEFSLLPALDPHAEHEYKGGKMNVKALHDGHDVYFLLQVDGEYVYSKG-ENTRCPS  217 (321)
Q Consensus       140 ~a~~~pg~~tldg~~~d-w~~i~~~~~~l~pal~~d~~~~y~~g~~~vk~~hdg~~~ffll~v~g~y~~~~~-~~~~c~s  217 (321)
                      +|....|.|+|||..+| |+..+-......-     .+...+.=+-+||++||++.+|++++|--+.-.... .--.--+
T Consensus         2 ~a~~~~~~~~IDG~ld~~W~~a~~~~~~~~~-----~g~~~~~~~t~~~~~~d~~~LYv~~~v~D~~~~~~~~~~~~~D~   76 (189)
T 1i82_A            2 VATAKYGTPVIDGEIDEIWNTTEEIETKAVA-----MGSLDKNATAKVRVLWDENYLYVLAIVKDPVLNKDNSNPWEQDS   76 (189)
T ss_dssp             EEEEEECCCCSSSSCCGGGGGSCEEECCEEE-----ESCTTTSCEEEEEEEECSSEEEEEEEEECSSCCCCSSSGGGSSE
T ss_pred             eeeeccCCceECCccchhhccCccEeeeeee-----cCCcCCCCcEEEEEEEcCCceEEEEEEECCCcccCCCCCccCCe
Confidence            36667889999999998 9987763321111     122223447899999999999999999776543211 1111234


Q ss_pred             eeeeeee-cCCceeeecC
Q 020804          218 IALMFQI-GEDATYHNMG  234 (321)
Q Consensus       218 valmf~~-g~~a~y~nmg  234 (321)
                      |-+.+.- ++..+||+.+
T Consensus        77 veifid~~~~~~~~y~~~   94 (189)
T 1i82_A           77 VEIFIDENNHKTGYYEDD   94 (189)
T ss_dssp             EEEEEETTCCCCSSCCTT
T ss_pred             EEEEECCCCCCCcccccc
Confidence            5555443 3444577654

>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}

Probab=95.47  E-value=0.0031  Score=44.96  Aligned_cols=36  Identities=14%  Similarity=0.054  Sum_probs=18.4

Q ss_pred             ccceEEEeehhhHHHHHHH-HHHHhhheeecccCCCC
Q 020804           84 SNLILLFGIGTGLLITAII-SVLIICSCAFRRRNSKA  119 (321)
Q Consensus        84 lS~iaIVGIaVG~vilLLL-~VliLcLC~~Rrkkkka  119 (321)
                      ++..+|++-++|+++++++ .+++.++.++||+++|+
T Consensus         7 s~~~aIA~gVVgGv~~v~ii~~~~~~~~RRRr~~~kr   43 (44)
T 2l2t_A            7 ARTPLIAAGVIGGLFILVIVGLTFAVYVRRKSIKKKR   43 (44)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCC
T ss_pred             CCcceEEEeehHHHHHHHHHHHHHHHHhhhhhhhhcc
Confidence            3556677777776654333 33334444444444443

>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A

Probab=95.29  E-value=0.0031  Score=45.02  Aligned_cols=32  Identities=13%  Similarity=0.243  Sum_probs=16.8

Q ss_pred             eEEEeehhhHHHHHHHHHHHhhheeecccCCC
Q 020804           87 ILLFGIGTGLLITAIISVLIICSCAFRRRNSK  118 (321)
Q Consensus        87 iaIVGIaVG~vilLLL~VliLcLC~~Rrkkkk  118 (321)
                      ..|+|+++|.++++++.++++++.++||.++|
T Consensus        12 ~~Ia~~vVGvll~vi~~l~~~~~~RRR~~~~k   43 (44)
T 2jwa_A           12 TSIISAVVGILLVVVLGVVFGILIKRRQQKIR   43 (44)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCSCCC
T ss_pred             cchHHHHHHHHHHHHHHHHHHhheehhhhhcc
Confidence            34777888844444444444444444444443

>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*

Probab=92.36  E-value=0.024  Score=59.03  Aligned_cols=31  Identities=16%  Similarity=0.109  Sum_probs=0.0

Q ss_pred             CCCccceEEEeehhhHHHHHHHHHHHhhhee
Q 020804           81 GKHSNLILLFGIGTGLLITAIISVLIICSCA  111 (321)
Q Consensus        81 kKklS~iaIVGIaVG~vilLLL~VliLcLC~  111 (321)
                      .-.++.++|+||.+|.+++|+++++++|++|
T Consensus       699 ~~~l~~~aii~il~~~~~ll~~~ll~~~~~~  729 (880)
T 1q55_A          699 VGGFDLPIILVILGSVLALLILFLLLLLFLK  729 (880)
T ss_dssp             -------------------------------
T ss_pred             ccCccHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            3457788899888887766555544444333

>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}

Probab=92.26  E-value=0.03  Score=37.74  Aligned_cols=14  Identities=7%  Similarity=-0.076  Sum_probs=5.7

Q ss_pred             ceEEEeehhhHHHH
Q 020804           86 LILLFGIGTGLLIT   99 (321)
Q Consensus        86 ~iaIVGIaVG~vil   99 (321)
                      ..+|++.+++++++
T Consensus        12 ~~~I~~~vv~Gv~l   25 (41)
T 2k9y_A           12 NLAVIGGVAVGVVL   25 (41)
T ss_dssp             STHHHHHHHHHHHH
T ss_pred             eEEEEeehhHHHHH
Confidence            34444334444433

>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}

Probab=90.17  E-value=0.1  Score=38.58  Aligned_cols=35  Identities=23%  Similarity=0.189  Sum_probs=19.6

Q ss_pred             ccceEEEeehhhHHHHHHHHHHHhhheeecccCCC
Q 020804           84 SNLILLFGIGTGLLITAIISVLIICSCAFRRRNSK  118 (321)
Q Consensus        84 lS~iaIVGIaVG~vilLLL~VliLcLC~~Rrkkkk  118 (321)
                      ...+.|+..++|+++++.+++.++.-|-|-||+|+
T Consensus        10 vp~wiIi~svl~GLllL~li~~~LwK~GFFkR~~~   44 (54)
T 2knc_A           10 IPIWWVLVGVLGGLLLLTILVLAMWKVGFFKRNRP   44 (54)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCC
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHcCcccCCCC
Confidence            34666665666666655555555555554444443

>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}

Probab=88.04  E-value=0.13  Score=38.07  Aligned_cols=35  Identities=17%  Similarity=0.223  Sum_probs=18.9

Q ss_pred             ceEEEeehhhHHHHHHHHHHHhhheeecccCCCCC
Q 020804           86 LILLFGIGTGLLITAIISVLIICSCAFRRRNSKAS  120 (321)
Q Consensus        86 ~iaIVGIaVG~vilLLL~VliLcLC~~Rrkkkka~  120 (321)
                      .+.|+.-++|+++++.+++.++.-|-|-||+||..
T Consensus         9 ~WiIi~svl~GLLLL~Lii~~LwK~GFFKR~~~~~   43 (54)
T 2l8s_A            9 LWVILLSAFAGLLLLMLLILALWKIGFFKRPLKKK   43 (54)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCSCC
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHcCcccCCCcch
Confidence            56666555666665555555555555544444433

>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}

Probab=86.27  E-value=0.38  Score=37.30  Aligned_cols=30  Identities=13%  Similarity=0.036  Sum_probs=13.8

Q ss_pred             ehhhHHHHHHHHHH-HhhheeecccCCCCCC
Q 020804           92 IGTGLLITAIISVL-IICSCAFRRRNSKASP  121 (321)
Q Consensus        92 IaVG~vilLLL~Vl-iLcLC~~Rrkkkka~~  121 (321)
                      |++|+++.+|+... .|++|.+++.+||+++
T Consensus        12 ivlGg~~~lll~~glcI~ccvkcrhRrrqAe   42 (70)
T 2klu_A           12 IVLGGVAGLLLFIGLGIFFSVRSRHRRRQAE   42 (70)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSSCCSSSCT
T ss_pred             HHHhHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            56666664443333 2333443444444444

>2l34_A TYRO protein tyrosine kinase-binding protein; immunoreceptor, transmembrane assembly, DAP12, protein bindi; NMR {Homo sapiens} PDB: 2l35_B

Probab=82.72  E-value=0.26  Score=33.04  Aligned_cols=25  Identities=24%  Similarity=0.309  Sum_probs=18.6

Q ss_pred             CccceEEEeehhhHHHHHHHHHHHh
Q 020804           83 HSNLILLFGIGTGLLITAIISVLII  107 (321)
Q Consensus        83 klS~iaIVGIaVG~vilLLL~VliL  107 (321)
                      ++|..+|+||++|.+++.+++.+.+
T Consensus         3 ~L~~gaIaGIVvgdi~~t~~i~~~v   27 (33)
T 2l34_A            3 TVSPGVLAGIVVGDLVLTVLIALAV   27 (33)
T ss_dssp             CCCTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCcceEEeEeHHHHHHHHHHHHHH
Confidence            4678899999999998666553433

>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A

Probab=80.75  E-value=0.51  Score=33.17  Aligned_cols=34  Identities=24%  Similarity=0.201  Sum_probs=18.2

Q ss_pred             ccceEEEeehhhHHHHHHHHHHHhhheeecccCC
Q 020804           84 SNLILLFGIGTGLLITAIISVLIICSCAFRRRNS  117 (321)
Q Consensus        84 lS~iaIVGIaVG~vilLLL~VliLcLC~~Rrkkk  117 (321)
                      ...+.|+.-++|+++++.+++.++.-|-|-||+|
T Consensus         8 vp~wiIi~s~l~GLllL~li~~~LwK~GFFkR~~   41 (42)
T 2k1a_A            8 IPIWWVLVGVLGGLLLLTILVLAMWKVGFFKRNR   41 (42)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCC
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHcCcccCCC
Confidence            3466666555666655555545555454444443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	321
d1i8aa_	189	Xylanase 10A {Thermotoga maritima [TaxId: 2336]}	95.68

>d1i8aa_ b.1.9.2 (A:) Xylanase 10A {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: CBD9-like
family: Family 9 carbohydrate-binding module, CBD9
domain: Xylanase 10A
species: Thermotoga maritima [TaxId: 2336]

Probab=95.68  E-value=0.0059  Score=48.85  Aligned_cols=76  Identities=18%  Similarity=0.289  Sum_probs=49.9

Q ss_pred             eCceeeecCCCCC-cccccCccccccccCCCCCCCCCCCCeeEEEEeecCccEEEEEEecCceeeecC-CcccCCceeee
Q 020804          144 KPGLITLDGHADD-WEDIDGSEFSLLPALDPHAEHEYKGGKMNVKALHDGHDVYFLLQVDGEYVYSKG-ENTRCPSIALM  221 (321)
Q Consensus       144 ~pg~~tldg~~~d-w~~i~~~~~~l~pal~~d~~~~y~~g~~~vk~~hdg~~~ffll~v~g~y~~~~~-~~~~c~svalm  221 (321)
                      +=|.|||||..++ |+..+-..  ++-...+.....   -+-+||+++|.+.+||+++|--+...... .--..-+|.++
T Consensus         6 ~~g~p~IDG~lde~W~~a~~~~--~~~~~~~~~~~~---~~t~v~~~~D~~~LYv~~~~~D~~~~~~~~~~~~~D~vei~   80 (189)
T d1i8aa_           6 KYGTPVIDGEIDEIWNTTEEIE--TKAVAMGSLDKN---ATAKVRVLWDENYLYVLAIVKDPVLNKDNSNPWEQDSVEIF   80 (189)
T ss_dssp             EECCCCSSSSCCGGGGGSCEEE--CCEEEESCTTTS---CEEEEEEEECSSEEEEEEEEECSSCCCCSSSGGGSSEEEEE
T ss_pred             ccCCCEECccCChHHhcCcccc--cceeccCCCCCC---CcEEEEEEEecCeEEEEEEEEcCCcccccCCccCCCeEEEE
Confidence            3499999999999 99876543  333333333322   36799999999999999999765432211 11123567777


Q ss_pred             eee
Q 020804          222 FQI  224 (321)
Q Consensus       222 f~~  224 (321)
                      |.-
T Consensus        81 id~   83 (189)
T d1i8aa_          81 IDE   83 (189)
T ss_dssp             EES
T ss_pred             EcC
Confidence            754