Citrus Sinensis ID: 020817

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-
MAATSSTATTHLIVGSTSRLHNTRTTKFFQNGVVLTQKKTLSLRRRRSASIPPTAVLPFDLSPPPIDHDLLETVKSEGAKISGEGIVETFGNDGEALDAADNGVAAVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDIAHAWIMKNAVILVVSPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQVMRDLNLGDLVGEAYGTHRHYSVNGMPITVGVGNVISEEGFSLLMSPAAAGSVWETLLSQGAVPMGSNAWEKLRIIKGRPAPGKELTNEFNVLEAGLWNSISLDKGS
cccccccccEEEEEccccccccccccccccccEEEEEccccccccccccccccccccccccccccccHHHHHHccccEEEccccccccccccHHHHHHHHHHcccEEEcccccEEEEEcccHHHHHHHcccccccccccccEEEEccccccccEEEEEEEEEEccEEEEEEccccHHHHHHHHHHcccccccEEEEEccccEEEEEEEcccHHHHHHHcccccccccccccEEEEEEccccEEEEEccccccccEEEEEcHHHHHHHHHHHHHcccccccHHHHHHHHHHHccccccccccccccccccccccEEcccccc
cccccccHHEEEEEccccHcccccccHHccccEEEEEccEEEHHHHcccEcccEEEEEEccccccccHHHHHHHHHccccEccccccEEcccHHHHHHHHHHHcccEEEccccEEEEEcHHHHHHHHHHHcccHHHcccccEEEEEcccccccEEcEEEEEEccccEEEEEEccccHHHHHHHHHHHcccccEEEEEccHHHHHHHHccHHHHHHHHHHccccHHHcccEEEEEEEEcccEEEEEEccccccccEEEEEcHHHHHHHHHHHHHccccccccccHHHHHHHcccccccccccccccccHcccEEEEEEcccc
maatsstatthlivgstsrlhntrttkffqNGVVLTQKKTlslrrrrsasipptavlpfdlspppidhdLLETVKsegakisgegivetfgndgealdaadngvaavdlshfgrirvsgddriQFLHNQSTANFEILregqgcdtvfvtptaRTIDIAHAWIMKNAVILVVSPLTCSSITEMLNKYVFFAdkveiqditkqTCLFVvvgpksnqvmrdlnlgdlvgeaygthrhysvngmpiTVGVGNVIseegfsllmspaaaGSVWETLLSqgavpmgsnAWEKLRIikgrpapgkeltnEFNVLEAGLwnsisldkgs
maatsstatthlivgstsrlhntrttkffqngvvltqkktlslrrrrsasipptavlpfdlspppIDHDLLETVKSEGAKISGEGIVETFGNDGEALDAADNGVAAVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDIAHAWIMKNAVILVVSPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQVMRDLNLGDLVGEAYGTHRHYSVNGMPITVGVGNVISEEGFSLLMSPAAAGSVWETLLSQGAVPMGSNAWEKLRIIKGRPAPGKELTNEFnvleaglwnsisldkgs
MAATSSTATTHLIVGSTSRLHNTRTTKFFQNGVVLTQKKTLSLRRRRSASIPPTAVLPFDLSPPPIDHDLLETVKSEGAKISGEGIVETFGNDGEALDAADNGVAAVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDIAHAWIMKNAVILVVSPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQVMRDLNLGDLVGEAYGTHRHYSVNGMPITVGVGNVISEEGFSLLMSPAAAGSVWETLLSQGAVPMGSNAWEKLRIIKGRPAPGKELTNEFNVLEAGLWNSISLDKGS
***********LIVGSTSRLHNTRTTKFFQNGVVLTQKKT****************************************ISGEGIVETFGNDGEALDAADNGVAAVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDIAHAWIMKNAVILVVSPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQVMRDLNLGDLVGEAYGTHRHYSVNGMPITVGVGNVISEEGFSLLMSPAAAGSVWETLLSQGAVPMGSNAWEKLRIIKGRPAPGKELTNEFNVLEAGLWNSI******
*********THLIVGSTSRLHNTRTTKFFQNGVVLTQKK**************************IDHDLLETVKSEGAKISGEGIVETFGNDGEALDAADNGVAAVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDIAHAWIMKNAVILVVSPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQVMRDLNLGDLVGEAYGTHRHYSVNGMPITVGVGNVISEEGFSLLMSPAAAGSVWETLLSQGAVPMGSNAWEKLRIIKGRPAPGKELTNEFNVLEAGLWNSISLDKG*
**********HLIVGSTSRLHNTRTTKFFQNGVVLTQKKTLSLRRRRSASIPPTAVLPFDLSPPPIDHDLLETVKSEGAKISGEGIVETFGNDGEALDAADNGVAAVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDIAHAWIMKNAVILVVSPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQVMRDLNLGDLVGEAYGTHRHYSVNGMPITVGVGNVISEEGFSLLMSPAAAGSVWETLLSQGAVPMGSNAWEKLRIIKGRPAPGKELTNEFNVLEAGLWNSISLDKGS
******TATTHLIVGSTSRLHNTRTTKFFQNGVVLTQKKTLSLRRRRSASIPPTAVLPFDLSPPPIDHDLLETVKSEGAKISGEGIVETFGNDGEALDAADNGVAAVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDIAHAWIMKNAVILVVSPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQVMRDLNLGDLVGEAYGTHRHYSVNGMPITVGVGNVISEEGFSLLMSPAAAGSVWETLLSQGAVPMGSNAWEKLRIIKGRPAPGKELTNEFNVLEAGLWNSISLDK**
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAATSSTATTHLIVGSTSRLHNTRTTKFFQNGVVLTQKKTLSLRRRRSASIPPTAVLPFDLSPPPIDHDLLETVKSEGAKISGEGIVETFGNDGEALDAADNGVAAVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDIAHAWIMKNAVILVVSPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQVMRDLNLGDLVGEAYGTHRHYSVNGMPITVGVGNVISEEGFSLLMSPAAAGSVWETLLSQGAVPMGSNAWEKLRIIKGRPAPGKELTNEFNVLEAGLWNSISLDKGS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query321 2.2.26 [Sep-21-2011]
Q3AET7360 Aminomethyltransferase OS yes no 0.679 0.605 0.260 9e-16
Q8RCV9374 Aminomethyltransferase OS yes no 0.685 0.588 0.278 1e-14
B0KD95368 Aminomethyltransferase OS yes no 0.688 0.600 0.267 5e-14
Q5KX76364 Aminomethyltransferase OS yes no 0.710 0.626 0.266 3e-13
C5D4A2364 Aminomethyltransferase OS yes no 0.704 0.620 0.260 3e-13
Q82JI2 372 Aminomethyltransferase OS yes no 0.657 0.567 0.267 4e-13
B0K242368 Aminomethyltransferase OS yes no 0.688 0.600 0.262 5e-13
Q5WF30367 Aminomethyltransferase OS yes no 0.676 0.591 0.257 5e-13
O86567 372 Aminomethyltransferase OS yes no 0.713 0.615 0.246 6e-13
A4FLG1367 Aminomethyltransferase OS yes no 0.778 0.681 0.240 9e-13
>sp|Q3AET7|GCST_CARHZ Aminomethyltransferase OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=gcvT PE=3 SV=1 Back     alignment and function desciption
 Score = 84.7 bits (208), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 58/223 (26%), Positives = 99/223 (44%), Gaps = 5/223 (2%)

Query: 99  AADNGVAAVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTID-- 156
           A    V   D+SH G I ++G    +F++   T +   L  G    T    P   T+D  
Sbjct: 41  AVRTDVGMFDVSHMGEIEITGKQAERFVNYLITNDVSRLNSGDVIYTTMCYPDGGTVDDL 100

Query: 157 IAHAWIMKNAVILVVSPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQVM 216
           +A+ +  +  +++V +      +  +L    +  D V + D++ +T    + GP++ +++
Sbjct: 101 LAYKYSTERYLLVVNAANKDKDLAHILQ---YRWDDVTVTDLSDETAEIALQGPRAQEIL 157

Query: 217 RDLNLGDLVGEAYGTHRHYSVNGMPITVGVGNVISEEGFSLLMSPAAAGSVWETLLSQGA 276
           + L   DL    Y       V G+P  V       E+GF +  +P  A  +W  LL+ G 
Sbjct: 158 QKLTAFDLNQIKYFGFAEIEVAGVPCLVSRTGYTGEDGFEIYFAPNLATKIWNELLNLGV 217

Query: 277 VPMGSNAWEKLRIIKGRPAPGKELTNEFNVLEAGLWNSISLDK 319
            P G  A + LR     P  G EL+ E   LEAGL  ++  +K
Sbjct: 218 KPAGLGARDTLRFEACLPLYGHELSAEITPLEAGLGWAVKFNK 260
The glycine cleavage system catalyzes the degradation of glycine.
Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) (taxid: 246194)
EC: 2EC: .EC: 1EC: .EC: 2EC: .EC: 1EC: 0
>sp|Q8RCV9|GCST_THETN Aminomethyltransferase OS=Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) GN=gcvT PE=3 SV=1 Back     alignment and function description
>sp|B0KD95|GCST_THEP3 Aminomethyltransferase OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=gcvT PE=3 SV=1 Back     alignment and function description
>sp|Q5KX76|GCST_GEOKA Aminomethyltransferase OS=Geobacillus kaustophilus (strain HTA426) GN=gcvT PE=3 SV=1 Back     alignment and function description
>sp|C5D4A2|GCST_GEOSW Aminomethyltransferase OS=Geobacillus sp. (strain WCH70) GN=gcvT PE=3 SV=1 Back     alignment and function description
>sp|Q82JI2|GCST_STRAW Aminomethyltransferase OS=Streptomyces avermitilis (strain ATCC 31267 / DSM 46492 / JCM 5070 / NCIMB 12804 / NRRL 8165 / MA-4680) GN=gcvT PE=3 SV=1 Back     alignment and function description
>sp|B0K242|GCST_THEPX Aminomethyltransferase OS=Thermoanaerobacter sp. (strain X514) GN=gcvT PE=3 SV=1 Back     alignment and function description
>sp|Q5WF30|GCST_BACSK Aminomethyltransferase OS=Bacillus clausii (strain KSM-K16) GN=gcvT PE=3 SV=1 Back     alignment and function description
>sp|O86567|GCST_STRCO Aminomethyltransferase OS=Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145) GN=gcvT PE=3 SV=1 Back     alignment and function description
>sp|A4FLG1|GCST_SACEN Aminomethyltransferase OS=Saccharopolyspora erythraea (strain NRRL 23338) GN=gcvT PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query321
225447955 430 PREDICTED: aminomethyltransferase [Vitis 0.993 0.741 0.701 1e-128
255577330 433 fad oxidoreductase, putative [Ricinus co 0.987 0.732 0.696 1e-126
356512604 423 PREDICTED: aminomethyltransferase-like [ 0.819 0.621 0.798 1e-125
79367480 432 aminomethyltransferase [Arabidopsis thal 0.953 0.708 0.676 1e-123
46518443 423 At1g60990 [Arabidopsis thaliana] 0.953 0.723 0.676 1e-123
297837379 423 At1g60990 [Arabidopsis lyrata subsp. lyr 0.953 0.723 0.673 1e-122
357519357 422 Aminomethyltransferase [Medicago truncat 0.816 0.620 0.793 1e-122
449444697 445 PREDICTED: aminomethyltransferase-like [ 0.971 0.701 0.686 1e-121
12323347 436 hypothetical protein; 60474-57856 [Arabi 0.953 0.701 0.649 1e-120
302788266354 hypothetical protein SELMODRAFT_104148 [ 0.772 0.700 0.623 2e-89
>gi|225447955|ref|XP_002269147.1| PREDICTED: aminomethyltransferase [Vitis vinifera] gi|298204501|emb|CBI23776.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 230/328 (70%), Positives = 259/328 (78%), Gaps = 9/328 (2%)

Query: 1   MAATSSTATTHLIVGSTSRLHNTRTTKFFQNGVVLTQK--------KTLSLRRRRSASIP 52
           MAAT      +L+VG+T+ L  + +     +    T K        +  + R       P
Sbjct: 1   MAATVG-CMRYLLVGATTPLRRSTSLPSSSSFSSWTWKPNPISFPIQNHAFRSPEKFFTP 59

Query: 53  PTAVLPFDLSPPPIDHDLLETVKSEGAKISGEGIVETFGNDGEALDAADNGVAAVDLSHF 112
             A  PFDLSPPPID DLL+TV   GA++S  GI+ETF ND EALDA DNGV  VDLSHF
Sbjct: 60  LAAASPFDLSPPPIDLDLLDTVTEAGAEVSEAGIIETFDNDDEALDAVDNGVVVVDLSHF 119

Query: 113 GRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDIAHAWIMKNAVILVVS 172
           GRIRVSGDDRIQFLHNQSTANFE L+EGQGCDTVFVTPTARTID+AHAWIMKNAV LVVS
Sbjct: 120 GRIRVSGDDRIQFLHNQSTANFECLQEGQGCDTVFVTPTARTIDVAHAWIMKNAVTLVVS 179

Query: 173 PLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQVMRDLNLGDLVGEAYGTH 232
           P+TC SI EML KY+FFADKVEIQDITK+T  FV+VGPKS+QVM DLNLG LVG+ YGTH
Sbjct: 180 PVTCGSIIEMLTKYIFFADKVEIQDITKKTSFFVLVGPKSHQVMEDLNLGALVGKPYGTH 239

Query: 233 RHYSVNGMPITVGVGNVISEEGFSLLMSPAAAGSVWETLLSQGAVPMGSNAWEKLRIIKG 292
           +H+ VNGMPITVGVGN ISE+GFS +MSPA AGSVW+ LLSQGA+PMGSNAWEKLRI +G
Sbjct: 240 QHFMVNGMPITVGVGNAISEDGFSFMMSPAIAGSVWKALLSQGAIPMGSNAWEKLRIFQG 299

Query: 293 RPAPGKELTNEFNVLEAGLWNSISLDKG 320
           RPAPGKELTNEFNVLEAGLWNSISL+KG
Sbjct: 300 RPAPGKELTNEFNVLEAGLWNSISLNKG 327

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255577330|ref|XP_002529546.1| fad oxidoreductase, putative [Ricinus communis] gi|223530994|gb|EEF32849.1| fad oxidoreductase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356512604|ref|XP_003525008.1| PREDICTED: aminomethyltransferase-like [Glycine max] Back     alignment and taxonomy information
>gi|79367480|ref|NP_176295.3| aminomethyltransferase [Arabidopsis thaliana] gi|145326078|ref|NP_001077748.1| aminomethyltransferase [Arabidopsis thaliana] gi|186492130|ref|NP_001117522.1| aminomethyltransferase [Arabidopsis thaliana] gi|51969110|dbj|BAD43247.1| unnamed protein product [Arabidopsis thaliana] gi|332195639|gb|AEE33760.1| aminomethyltransferase [Arabidopsis thaliana] gi|332195640|gb|AEE33761.1| aminomethyltransferase [Arabidopsis thaliana] gi|332195641|gb|AEE33762.1| aminomethyltransferase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|46518443|gb|AAS99703.1| At1g60990 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297837379|ref|XP_002886571.1| At1g60990 [Arabidopsis lyrata subsp. lyrata] gi|297332412|gb|EFH62830.1| At1g60990 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|357519357|ref|XP_003629967.1| Aminomethyltransferase [Medicago truncatula] gi|355523989|gb|AET04443.1| Aminomethyltransferase [Medicago truncatula] Back     alignment and taxonomy information
>gi|449444697|ref|XP_004140110.1| PREDICTED: aminomethyltransferase-like [Cucumis sativus] gi|449511901|ref|XP_004164084.1| PREDICTED: aminomethyltransferase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|12323347|gb|AAG51655.1|AC018908_21 hypothetical protein; 60474-57856 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|302788266|ref|XP_002975902.1| hypothetical protein SELMODRAFT_104148 [Selaginella moellendorffii] gi|300156178|gb|EFJ22807.1| hypothetical protein SELMODRAFT_104148 [Selaginella moellendorffii] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query321
TAIR|locus:2206051 432 AT1G60990 [Arabidopsis thalian 0.953 0.708 0.676 2.2e-112
TIGR_CMR|CHY_0489360 CHY_0489 "glycine cleavage sys 0.679 0.605 0.264 1.8e-15
TIGR_CMR|SPO_3396 816 SPO_3396 "FAD dependent oxidor 0.704 0.276 0.276 2.3e-10
TIGR_CMR|BA_4449366 BA_4449 "glycine cleavage syst 0.710 0.622 0.233 2.2e-09
UNIPROTKB|Q8EIH8318 ygfZ "Folate-dependent protein 0.401 0.405 0.267 1.5e-08
TIGR_CMR|SO_0861318 SO_0861 "conserved hypothetica 0.401 0.405 0.267 1.5e-08
UNIPROTKB|P64220367 gcvT "Aminomethyltransferase" 0.644 0.564 0.256 3.2e-08
TIGR_CMR|SPO_3400 815 SPO_3400 "aminomethyl transfer 0.392 0.154 0.299 2e-07
UNIPROTKB|F1RF50 866 DMGDH "Uncharacterized protein 0.657 0.243 0.264 3.7e-07
ASPGD|ASPL0000076695 948 AN8654 [Emericella nidulans (t 0.660 0.223 0.230 4.1e-07
TAIR|locus:2206051 AT1G60990 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1109 (395.4 bits), Expect = 2.2e-112, P = 2.2e-112
 Identities = 213/315 (67%), Positives = 251/315 (79%)

Query:    14 VGSTSRLHNTRTTKFFQNGVVLTQKKTLSLR----RRRSASIPPTAV----LPFDLSPPP 65
             + S S + NT       NG VL ++++LSLR    R R   +   +     L FD SPPP
Sbjct:    16 IDSVSHITNTALLPCLYNGTVL-RRRSLSLRKCGFRERKFQLRCVSASSDSLQFDFSPPP 74

Query:    66 IDHDLLETVKSEGAKISGEGIVETFGNDGEALDAADNGVAAVDLSHFGRIRVSGDDRIQF 125
             IDHD L+T+   G K+S +G+VE+F ND EALDA DNGV  VDLSHFGRIRVSGDDR  F
Sbjct:    75 IDHDFLDTISVSGGKVSEDGVVESFDNDDEALDAFDNGVVVVDLSHFGRIRVSGDDRAHF 134

Query:   126 LHNQSTANFEILREGQGCDTVFVTPTARTIDIAHAWIMKNAVILVVSPLTCSSITEMLNK 185
             LHNQ+TANFE L EGQGCDTVFVTPTARTIDIAHAWIMKNA++L VSP TC SI EMLNK
Sbjct:   135 LHNQTTANFESLYEGQGCDTVFVTPTARTIDIAHAWIMKNAILLTVSPTTCQSIIEMLNK 194

Query:   186 YVFFADKVEIQDITKQTCLFVVVGPKSNQVMRDLNLGDLVGEAYGTHRHYSVNGMPITVG 245
             Y+FFADKVEI+DITKQTCLF + GPKSNQ+M  LNLGDL+G+ YG H+HYS +GMPITVG
Sbjct:   195 YIFFADKVEIKDITKQTCLFALAGPKSNQIMSKLNLGDLIGQPYGRHQHYSFDGMPITVG 254

Query:   246 VGNVISEEGFSLLMSPAAAGSVWETLLSQGAVPMGSNAWEKLRIIKGRPAPGKELTNEFN 305
             VG++IS+EGF++LMSP  A SVW+TLL++GA+PMGS AWEKLRI +GRPAP +EL+ EFN
Sbjct:   255 VGSLISDEGFTMLMSPGGAVSVWKTLLAEGAIPMGSVAWEKLRITQGRPAPERELSKEFN 314

Query:   306 VLEAGLWNSISLDKG 320
             VLEAGLWNSISL+KG
Sbjct:   315 VLEAGLWNSISLNKG 329
GO:0004047 "aminomethyltransferase activity" evidence=IEA;ISS
GO:0005739 "mitochondrion" evidence=ISM
GO:0009507 "chloroplast" evidence=IDA
GO:0016226 "iron-sulfur cluster assembly" evidence=IGI
TIGR_CMR|CHY_0489 CHY_0489 "glycine cleavage system T protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_3396 SPO_3396 "FAD dependent oxidoreductase/aminomethyl transferase" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
TIGR_CMR|BA_4449 BA_4449 "glycine cleavage system T protein" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
UNIPROTKB|Q8EIH8 ygfZ "Folate-dependent protein involved in synthesis and repair of FeS clusters YgfZ" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
TIGR_CMR|SO_0861 SO_0861 "conserved hypothetical protein" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
UNIPROTKB|P64220 gcvT "Aminomethyltransferase" [Mycobacterium tuberculosis (taxid:1773)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_3400 SPO_3400 "aminomethyl transferase family protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
UNIPROTKB|F1RF50 DMGDH "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
ASPGD|ASPL0000076695 AN8654 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.1.2LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query321
pfam01571212 pfam01571, GCV_T, Aminomethyltransferase folate-bi 3e-46
COG0354305 COG0354, COG0354, Predicted aminomethyltransferase 2e-25
COG0404 379 COG0404, GcvT, Glycine cleavage system T protein ( 7e-24
PRK00389359 PRK00389, gcvT, glycine cleavage system aminomethy 2e-17
TIGR00528362 TIGR00528, gcvT, glycine cleavage system T protein 2e-14
TIGR0331767 TIGR03317, ygfZ_signature, folate-binding protein 5e-08
PLN02319 404 PLN02319, PLN02319, aminomethyltransferase 6e-07
TIGR01372 985 TIGR01372, soxA, sarcosine oxidase, alpha subunit 5e-04
>gnl|CDD|216578 pfam01571, GCV_T, Aminomethyltransferase folate-binding domain Back     alignment and domain information 
 Score =  155 bits (393), Expect = 3e-46
 Identities = 60/211 (28%), Positives = 95/211 (45%), Gaps = 7/211 (3%)

Query: 107 VDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDIAHAWIM-KN 165
            D+SH G+I VSG D   FL    T +   L+ GQ   T+ +      +D    + + ++
Sbjct: 2   FDVSHMGKIEVSGPDAAAFLQRLLTNDVSKLKPGQATYTLLLNEKGGILDDLTVYRLGED 61

Query: 166 AVILVVSPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQVMRDLNLGDLV 225
             +LVV+          L KY  F  KV + D+T +  +  + GPK+ +++++L    L 
Sbjct: 62  EFLLVVNAANAEKDLAWLRKYAVF-SKVTVADVTDELAVLALQGPKARELLQELTDLSLE 120

Query: 226 GEAYGTHRHYSVNGMPITVGVGNVISEEGFSLLMSPAAAGSVWETLLS----QGAVPMGS 281
              + +       G P+ V       E+G+ + +    A ++WE LL      G  P G 
Sbjct: 121 ALPFFSFAEIEGGG-PVRVSRTGYTGEDGYEIYVPAEDAVALWEALLEAGKEAGLKPAGL 179

Query: 282 NAWEKLRIIKGRPAPGKELTNEFNVLEAGLW 312
            A + LRI  G P  G +L  E   LEAGL 
Sbjct: 180 GARDSLRIEAGYPLYGHDLDEETTPLEAGLG 210

This is a family of glycine cleavage T-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes. GCV catalyzes the catabolism of glycine in eukaryotes. The T-protein is an aminomethyl transferase. Length = 212
>gnl|CDD|223431 COG0354, COG0354, Predicted aminomethyltransferase related to GcvT [General function prediction only] Back     alignment and domain information
>gnl|CDD|223481 COG0404, GcvT, Glycine cleavage system T protein (aminomethyltransferase) [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|234742 PRK00389, gcvT, glycine cleavage system aminomethyltransferase T; Reviewed Back     alignment and domain information
>gnl|CDD|233010 TIGR00528, gcvT, glycine cleavage system T protein Back     alignment and domain information
>gnl|CDD|234167 TIGR03317, ygfZ_signature, folate-binding protein YgfZ Back     alignment and domain information
>gnl|CDD|177953 PLN02319, PLN02319, aminomethyltransferase Back     alignment and domain information
>gnl|CDD|233382 TIGR01372, soxA, sarcosine oxidase, alpha subunit family, heterotetrameric form Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 321
KOG2844 856 consensus Dimethylglycine dehydrogenase precursor 100.0
COG0404 379 GcvT Glycine cleavage system T protein (aminomethy 100.0
PLN02319 404 aminomethyltransferase 100.0
PRK13579 370 gcvT glycine cleavage system aminomethyltransferas 100.0
PRK12486368 dmdA putative dimethyl sulfoniopropionate demethyl 100.0
PRK00389359 gcvT glycine cleavage system aminomethyltransferas 100.0
TIGR00528361 gcvT glycine cleavage system T protein. Eukaryotic 100.0
TIGR01372 985 soxA sarcosine oxidase, alpha subunit family, hete 100.0
KOG2770 401 consensus Aminomethyl transferase [Amino acid tran 100.0
PF01571211 GCV_T: Aminomethyltransferase folate-binding domai 100.0
PRK09559327 putative global regulator; Reviewed 100.0
COG0354305 Predicted aminomethyltransferase related to GcvT [ 99.96
TIGR01375152 soxG sarcosine oxidase, gamma subunit family, hete 99.86
KOG2929 348 consensus Transcription factor, component of CCR4 99.75
PF04268147 SoxG: Sarcosine oxidase, gamma subunit family ; In 99.27
TIGR0331767 ygfZ_signature folate-binding protein YgfZ. YgfZ i 99.18
COG4583189 Sarcosine oxidase gamma subunit [Amino acid transp 98.99
PF04268147 SoxG: Sarcosine oxidase, gamma subunit family ; In 97.86
TIGR01375152 soxG sarcosine oxidase, gamma subunit family, hete 97.51
COG4583189 Sarcosine oxidase gamma subunit [Amino acid transp 96.94
PF10396114 TrmE_N: GTP-binding protein TrmE N-terminus; Inter 96.52
PF0817092 POPLD: POPLD (NUC188) domain; InterPro: IPR012590 95.84
PF10396114 TrmE_N: GTP-binding protein TrmE N-terminus; Inter 95.1
COG0486 454 ThdF Predicted GTPase [General function prediction 93.88
PF01571211 GCV_T: Aminomethyltransferase folate-binding domai 93.1
COG0404 379 GcvT Glycine cleavage system T protein (aminomethy 92.23
PLN02319 404 aminomethyltransferase 91.86
PRK00389 359 gcvT glycine cleavage system aminomethyltransferas 91.75
TIGR00528 361 gcvT glycine cleavage system T protein. Eukaryotic 90.67
PRK13579 370 gcvT glycine cleavage system aminomethyltransferas 89.66
PRK12486 368 dmdA putative dimethyl sulfoniopropionate demethyl 88.88
TIGR01372 985 soxA sarcosine oxidase, alpha subunit family, hete 86.04
TIGR00450 442 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE 85.87
PRK05291 449 trmE tRNA modification GTPase TrmE; Reviewed 85.41
PRK05291 449 trmE tRNA modification GTPase TrmE; Reviewed 83.65
TIGR00450 442 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE 81.77
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=1.6e-74  Score=562.68  Aligned_cols=306  Identities=24%  Similarity=0.307  Sum_probs=292.1

Q ss_pred             ceeeEEe-ecccc----cccccccCccCCcccccccccccccceeeeecCCC---CCCCCCCCCCCCCcchHHHHHHcCC
Q 020817            8 ATTHLIV-GSTSR----LHNTRTTKFFQNGVVLTQKKTLSLRRRRSASIPPT---AVLPFDLSPPPIDHDLLETVKSEGA   79 (321)
Q Consensus         8 ~~~~~~~-~~~~~----~~~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~p~~---~~r~~r~sp~~~~~~l~~~~~~~GA   79 (321)
                      -+||||| |+|+.    +|++||+.+++|..|+++|++|+|+++|++.||++   +||++|+||      ||++|+++||
T Consensus       393 ~la~wi~~g~p~~d~~~~D~~Rf~~~~~~~~~lr~r~~Es~~~nys~~yp~~e~~agRnlR~sp------ly~~L~~aGa  466 (856)
T KOG2844|consen  393 YLAEWIIHGQPPLDVHELDLRRFGKLQTNRYFLRERAHESYGKNYSVVYPKEEFQAGRNLRMSP------LYDRLESAGA  466 (856)
T ss_pred             HHHHHhhcCCCCccchhccHHHhhhhhcccHHHhhhchhhhhcccccccchhhhccccccccCc------cHHHHHhccc
Confidence            3799999 99988    99999999998889999999999999999999984   999999999      9999999999


Q ss_pred             eEec---CC------------------------cceeeCChHHHHHHHhhCcEEEeCCCceEEEEEcchHHHHHHHcccc
Q 020817           80 KISG---EG------------------------IVETFGNDGEALDAADNGVAAVDLSHFGRIRVSGDDRIQFLHNQSTA  132 (321)
Q Consensus        80 ~f~~---~~------------------------~p~~f~~~~~E~~a~r~~vgl~Dls~~~~i~V~G~dA~~fLq~l~t~  132 (321)
                      +|++   |+                        .|.||+.++.||+|||++|+++|||+|+|+.|+|+||.+.||+|+++
T Consensus       467 v~~e~~G~ERP~~F~~~~kd~~~~~~~q~~tf~kp~wfd~V~SE~~acrerv~v~DmS~F~Kf~i~G~da~e~ld~LfSa  546 (856)
T KOG2844|consen  467 VFGEKHGWERPGWFYPPGKDDQYLPYGQDSTFRKPEWFDPVGSEYKACRERVGVFDMSSFGKFDITGQDAVELLDYLFSA  546 (856)
T ss_pred             chhhhccccCCCccCCCChhhhcccccccccccCCcchhhhHHHHHHHHhhceEeeccccceeeeccHHHHHHHHHHhhc
Confidence            9986   44                        35567779999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCcEEEEEEeCCCCcEE-EEEEEEEeCCeEEEEeCCcchHHHHHHHHHcccC-CCCeEEEEecCcEEEEEEeCC
Q 020817          133 NFEILREGQGCDTVFVTPTARTI-DIAHAWIMKNAVILVVSPLTCSSITEMLNKYVFF-ADKVEIQDITKQTCLFVVVGP  210 (321)
Q Consensus       133 dv~~l~~G~~~~t~~ln~kG~i~-d~~~~~~~~d~~~L~~~~~~~~~~~~~L~~~~~~-~~~V~i~d~t~~~~~l~v~GP  210 (321)
                      ||+. ++|..+||+|||++|++. |+++.++++++|+|+.++.++.+.+.||++++.. +.+|+|.|+|+++++|+|+||
T Consensus       547 nv~~-~vg~tv~T~mln~~Gg~e~D~tvsrl~~~~f~mia~t~qq~~~~~wi~k~~~~~~~~v~l~DvT~~~~~l~i~GP  625 (856)
T KOG2844|consen  547 NVDV-PVGSTVYTGMLNPKGGYEADCTVSRLSPRGFFMIAGTIQQLHDLSWIKKEMPKGGSNVELKDVTDELGALSIIGP  625 (856)
T ss_pred             CCCC-CCCceeeeeeecCCCCeEeeeeeeeecCCceEEEccchhhhhhHHHHHHHhhccCCceeeeechhhhceeeecCc
Confidence            9996 899999999999999999 9999999999999999999999999999999864 347999999999999999999


Q ss_pred             ChHHHHhhcccCCCCC--CCCcceEEEEECCeeEEEEecCcCCCCeEEEEEcccCHHHHHHHHHhCCC----cccCHHHH
Q 020817          211 KSNQVMRDLNLGDLVG--EAYGTHRHYSVNGMPITVGVGNVISEEGFSLLMSPAAAGSVWETLLSQGA----VPMGSNAW  284 (321)
Q Consensus       211 ~a~~vL~~l~~~dl~~--~~~~~~~~~~i~g~~v~i~R~~~~Ge~G~el~~~~~~a~~l~~~L~~aG~----~~~G~~A~  284 (321)
                      +|+.+|+++++.|+++  |||++++++.++++.++++|++|+||+|||||+|.+++.+||++|++||+    +.+|++|+
T Consensus       626 ~sR~vLqelt~~dls~~~fp~~~~k~l~vg~~girairis~~GELG~~Lyip~e~~~~vY~~im~AG~~~~l~naGyya~  705 (856)
T KOG2844|consen  626 QSRKVLQELTDADLSDDHFPFLTTKELKVGNAGIRAIRISHTGELGWELYIPNEDAVAVYRAIMNAGQEEGLQNAGYYAL  705 (856)
T ss_pred             hHHHHHHhccCCCCCccccCcceeeeeeccccceEEEEEEeccccceEEEechHHHHHHHHHHHhhhhhhccccchhHHH
Confidence            9999999999999987  99999999999999999999999999999999999999999999999984    89999999


Q ss_pred             HHHHHHhcCCCCCCCCCCCcchhhcCCcccccCCCC
Q 020817          285 EKLRIIKGRPAPGKELTNEFNVLEAGLWNSISLDKG  320 (321)
Q Consensus       285 ~slRiE~G~~~~g~d~~~~~~P~E~gL~~~V~f~KG  320 (321)
                      ++|||||+|..||+|++++.||+|+||.+.|+||||
T Consensus       706 ~aLriEK~y~~Wg~dl~~d~tPlEaGl~f~vk~k~p  741 (856)
T KOG2844|consen  706 RALRIEKFYRAWGQDLNPDTTPLEAGLEFRVKLKKP  741 (856)
T ss_pred             HHHHHHHHHHhhccccCCCCChhhccceeEEecCCC
Confidence            999999999999999999999999999999999997

>COG0404 GcvT Glycine cleavage system T protein (aminomethyltransferase) [Amino acid transport and metabolism] Back     alignment and domain information
>PLN02319 aminomethyltransferase Back     alignment and domain information
>PRK13579 gcvT glycine cleavage system aminomethyltransferase T; Provisional Back     alignment and domain information
>PRK12486 dmdA putative dimethyl sulfoniopropionate demethylase; Reviewed Back     alignment and domain information
>PRK00389 gcvT glycine cleavage system aminomethyltransferase T; Reviewed Back     alignment and domain information
>TIGR00528 gcvT glycine cleavage system T protein Back     alignment and domain information
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form Back     alignment and domain information
>KOG2770 consensus Aminomethyl transferase [Amino acid transport and metabolism] Back     alignment and domain information
>PF01571 GCV_T: Aminomethyltransferase folate-binding domain; InterPro: IPR006222 This is a family of glycine cleavage T-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes Back     alignment and domain information
>PRK09559 putative global regulator; Reviewed Back     alignment and domain information
>COG0354 Predicted aminomethyltransferase related to GcvT [General function prediction only] Back     alignment and domain information
>TIGR01375 soxG sarcosine oxidase, gamma subunit family, heterotetrameric form Back     alignment and domain information
>KOG2929 consensus Transcription factor, component of CCR4 transcriptional complex [Transcription] Back     alignment and domain information
>PF04268 SoxG: Sarcosine oxidase, gamma subunit family ; InterPro: IPR007375 Sarcosine oxidase is a hetero-tetrameric enzyme that contains both covalently bound FMN and non-covalently bound FAD and NAD+ Back     alignment and domain information
>TIGR03317 ygfZ_signature folate-binding protein YgfZ Back     alignment and domain information
>COG4583 Sarcosine oxidase gamma subunit [Amino acid transport and metabolism] Back     alignment and domain information
>PF04268 SoxG: Sarcosine oxidase, gamma subunit family ; InterPro: IPR007375 Sarcosine oxidase is a hetero-tetrameric enzyme that contains both covalently bound FMN and non-covalently bound FAD and NAD+ Back     alignment and domain information
>TIGR01375 soxG sarcosine oxidase, gamma subunit family, heterotetrameric form Back     alignment and domain information
>COG4583 Sarcosine oxidase gamma subunit [Amino acid transport and metabolism] Back     alignment and domain information
>PF10396 TrmE_N: GTP-binding protein TrmE N-terminus; InterPro: IPR018948 This family represents the shorter, B, chain of the homo-dimeric structure which is a guanine nucleotide-binding protein that binds and hydrolyses GTP Back     alignment and domain information
>PF08170 POPLD: POPLD (NUC188) domain; InterPro: IPR012590 This domain is found in POP1-like nucleolar proteins [] Back     alignment and domain information
>PF10396 TrmE_N: GTP-binding protein TrmE N-terminus; InterPro: IPR018948 This family represents the shorter, B, chain of the homo-dimeric structure which is a guanine nucleotide-binding protein that binds and hydrolyses GTP Back     alignment and domain information
>COG0486 ThdF Predicted GTPase [General function prediction only] Back     alignment and domain information
>PF01571 GCV_T: Aminomethyltransferase folate-binding domain; InterPro: IPR006222 This is a family of glycine cleavage T-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes Back     alignment and domain information
>COG0404 GcvT Glycine cleavage system T protein (aminomethyltransferase) [Amino acid transport and metabolism] Back     alignment and domain information
>PLN02319 aminomethyltransferase Back     alignment and domain information
>PRK00389 gcvT glycine cleavage system aminomethyltransferase T; Reviewed Back     alignment and domain information
>TIGR00528 gcvT glycine cleavage system T protein Back     alignment and domain information
>PRK13579 gcvT glycine cleavage system aminomethyltransferase T; Provisional Back     alignment and domain information
>PRK12486 dmdA putative dimethyl sulfoniopropionate demethylase; Reviewed Back     alignment and domain information
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form Back     alignment and domain information
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE Back     alignment and domain information
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed Back     alignment and domain information
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed Back     alignment and domain information
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query321
1yx2_A365 Crystal Structure Of The Probable Aminomethyltransf 2e-12
1woo_A 364 Crystal Structure Of T-Protein Of The Glycine Cleav 1e-09
3gsi_A 827 Crystal Structure Of D552a Dimethylglycine Oxidase 7e-08
1pj5_A 830 Crystal Structure Of Dimethylglycine Oxidase Of Art 2e-07
1v5v_A 401 Crystal Structure Of A Component Of Glycine Cleavag 1e-06
3ttg_A 355 Crystal Structure Of Putative Aminomethyltransferas 1e-04
1vrq_A 964 Crystal Structure Of Heterotetrameric Sarcosine Oxi 4e-04
>pdb|1YX2|A Chain A, Crystal Structure Of The Probable Aminomethyltransferase From Bacillus Subtilis Length = 365 Back     alignment and structure 
Iteration: 1

 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/220 (23%), Positives = 96/220 (43%), Gaps = 8/220 (3%)
Query: 108 DLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDIAHAWIM-KNA 166
           D+SH G + VSG+D + FL    T +   L  G+   T    P   T+D    +   +N 
Sbjct: 51  DVSHXGEVEVSGNDSLSFLQRLXTNDVSALTPGRAQYTAXCYPDGGTVDDLLIYQKGENR 110
Query: 167 VILVVSPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQVMRDLNLGDLVG 226
            +LV++            ++   A  V+I + + Q  L  V GPK+  ++++L   D+  
Sbjct: 111 YLLVINASNIDKDLAWXKEHA--AGDVQIDNQSDQIALLAVQGPKAEAILKNLTDADVSA 168
Query: 227 -EAYGTHRHYSVNGMPITVGVGNVISEEGFSLLMSPAAAGSVWETLL----SQGAVPMGS 281
            + +       ++G    +       E+G+ +      A  +W+ ++    + G +P G 
Sbjct: 169 LKPFAFIDEADISGRKALISRTGYTGEDGYEIYCRSDDAXHIWKKIIDAGDAYGLIPCGL 228
Query: 282 NAWEKLRIIKGRPAPGKELTNEFNVLEAGLWNSISLDKGS 321
            A + LR     P  G+ELT +   +EAG+  ++   K S
Sbjct: 229 GARDTLRFEANIPLYGQELTRDITPIEAGIGFAVKHKKES 268
>pdb|1WOO|A Chain A, Crystal Structure Of T-Protein Of The Glycine Cleavage System Length = 364 Back     alignment and structure
>pdb|3GSI|A Chain A, Crystal Structure Of D552a Dimethylglycine Oxidase Mutant Of Arthrobacter Globiformis In Complex With Tetrahydrofolate Length = 827 Back     alignment and structure
>pdb|1PJ5|A Chain A, Crystal Structure Of Dimethylglycine Oxidase Of Arthrobacter Globiformis In Complex With Acetate Length = 830 Back     alignment and structure
>pdb|1V5V|A Chain A, Crystal Structure Of A Component Of Glycine Cleavage System: T-Protein From Pyrococcus Horikoshii Ot3 At 1.5 A Resolution Length = 401 Back     alignment and structure
>pdb|3TTG|A Chain A, Crystal Structure Of Putative Aminomethyltransferase From Leptospirillum Rubarum Length = 355 Back     alignment and structure
>pdb|1VRQ|A Chain A, Crystal Structure Of Heterotetrameric Sarcosine Oxidase From Corynebacterium Sp. U-96 In Complex With Folinic Acid Length = 964 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query321
3ttg_A355 Putative aminomethyltransferase; structural genomi 7e-56
1vly_A338 SPOT PR51, unknown protein from 2D-PAGE; structura 6e-40
1pj5_A 830 N,N-dimethylglycine oxidase; channelling, FAD bind 1e-28
1wos_A364 Aminomethyltransferase; T-protein; 1.84A {Thermoto 4e-18
1vlo_A 381 Aminomethyltransferase; NP417381, tetrahydrofolat 2e-14
1yx2_A365 Aminomethyltransferase; glycine cleavage system T 5e-14
1wsr_A 375 Aminomethyltransferase; glycine-cleavage sytem; 2. 4e-13
1v5v_A 401 Aminomethyltransferase; glycine-cleavage sytem, st 2e-11
3tfi_A369 GCVT-like aminomethyltransferase protein; demethyl 7e-11
3gir_A 393 Aminomethyltransferase; glycine cleavage system, a 1e-10
2gag_A 965 Heterotetrameric sarcosine oxidase alpha-subunit; 3e-07
>3ttg_A Putative aminomethyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.00A {Leptospirillum rubarum} Length = 355 Back     alignment and structure
 Score =  184 bits (469), Expect = 7e-56
 Identities = 50/228 (21%), Positives = 88/228 (38%), Gaps = 6/228 (2%)

Query: 99  AADNGVAAVDLS-HFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDI 157
            A         S     I V G+DR  FL   ++ +     E     + F+ P AR +  
Sbjct: 31  IAHKKFGLFYPSVSRPSIFVEGEDRKNFLQGIASQDILKQDEKSLSYSFFLNPKARILFD 90

Query: 158 AHAWIMKNAVILVVSPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQVMR 217
           A     ++ + L     T       L KY+FF  K +I D++       +VGP++  V+ 
Sbjct: 91  AWCGNFEDKIALFPPAGTREEFVNHLKKYLFFRTKAKITDMSDHFREIRLVGPETISVLL 150

Query: 218 DLNLGDLVGEAYGTHRHYSVNGMPITVGVGNVISEEGFSLLMSPAAAGSVWETLL----S 273
            L   +  G ++   ++     +  T    N+       L +      +  ++L     +
Sbjct: 151 SLFDNNFSGSSFRMLKNGGYVLIHPTSFQHNLDVGLQADLFIPIDQFETTQKSLEDFTSN 210

Query: 274 QGAVPMGSNAWEKLRIIKGRPAPGKELTNEFNVLEAGL-WNSISLDKG 320
           +G V +  +++      KG P    EL + F   EAGL    +S +KG
Sbjct: 211 KGGVLLDESSYLAYLTEKGIPLFPSELNDSFFPAEAGLDSVGVSYNKG 258
>1vly_A SPOT PR51, unknown protein from 2D-PAGE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.30A {Escherichia coli} SCOP: b.44.2.1 d.250.1.1 PDB: 1nrk_A Length = 338 Back     alignment and structure
>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A* Length = 830 Back     alignment and structure
>1wos_A Aminomethyltransferase; T-protein; 1.84A {Thermotoga maritima} SCOP: b.44.2.1 d.250.1.1 PDB: 1woo_A* 1wop_A* 1wor_A Length = 364 Back     alignment and structure
>1vlo_A Aminomethyltransferase; NP417381, tetrahydrofolat dependent) of glycine cleavage system, structural genomics, protein structure initiative; HET: MSE; 1.70A {Escherichia coli K12} SCOP: b.44.2.1 d.250.1.1 PDB: 3a8j_A* 3a8i_A* 3a8k_A* Length = 381 Back     alignment and structure
>1yx2_A Aminomethyltransferase; glycine cleavage system T protein, alpha-beta, beta-barrel, structural genomics, PSI, protein structure initiative; 2.08A {Bacillus subtilis} Length = 365 Back     alignment and structure
>1wsr_A Aminomethyltransferase; glycine-cleavage sytem; 2.00A {Homo sapiens} PDB: 1wsv_A* Length = 375 Back     alignment and structure
>1v5v_A Aminomethyltransferase; glycine-cleavage sytem, structural riken structural genomics/proteomics initiative, RSGI; 1.50A {Pyrococcus horikoshii} SCOP: b.44.2.1 d.250.1.1 Length = 401 Back     alignment and structure
>3tfi_A GCVT-like aminomethyltransferase protein; demethylase, THF; 1.60A {Candidatus pelagibacter ubique} PDB: 3tfh_A 3tfj_A* Length = 369 Back     alignment and structure
>3gir_A Aminomethyltransferase; glycine cleavage system, aminotransferase, structural genomics; 1.60A {Bartonella henselae} Length = 393 Back     alignment and structure
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A* Length = 965 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query321
1pj5_A 830 N,N-dimethylglycine oxidase; channelling, FAD bind 100.0
1vlo_A 381 Aminomethyltransferase; NP417381, tetrahydrofolat 100.0
1yx2_A365 Aminomethyltransferase; glycine cleavage system T 100.0
1wos_A364 Aminomethyltransferase; T-protein; 1.84A {Thermoto 100.0
3gir_A 393 Aminomethyltransferase; glycine cleavage system, a 100.0
1wsr_A 375 Aminomethyltransferase; glycine-cleavage sytem; 2. 100.0
3tfi_A369 GCVT-like aminomethyltransferase protein; demethyl 100.0
1v5v_A 401 Aminomethyltransferase; glycine-cleavage sytem, st 100.0
2gag_A 965 Heterotetrameric sarcosine oxidase alpha-subunit; 100.0
3ttg_A355 Putative aminomethyltransferase; structural genomi 100.0
1vly_A338 SPOT PR51, unknown protein from 2D-PAGE; structura 100.0
2gag_C210 Heterotetrameric sarcosine oxidase gamma-subunit; 99.97
1x31_C206 Sarcosine oxidase gamma subunit; heterotetrameric 99.96
2gag_C210 Heterotetrameric sarcosine oxidase gamma-subunit; 97.39
1x31_C206 Sarcosine oxidase gamma subunit; heterotetrameric 97.31
2bry_A497 NEDD9 interacting protein with calponin homology a 96.68
3gir_A 393 Aminomethyltransferase; glycine cleavage system, a 94.6
1yx2_A 365 Aminomethyltransferase; glycine cleavage system T 93.57
1wos_A 364 Aminomethyltransferase; T-protein; 1.84A {Thermoto 93.5
1v5v_A 401 Aminomethyltransferase; glycine-cleavage sytem, st 93.34
1wsr_A 375 Aminomethyltransferase; glycine-cleavage sytem; 2. 93.04
1vly_A 338 SPOT PR51, unknown protein from 2D-PAGE; structura 92.88
1vlo_A 381 Aminomethyltransferase; NP417381, tetrahydrofolat 92.66
3ttg_A 355 Putative aminomethyltransferase; structural genomi 91.07
3geh_A 462 MNME, tRNA modification GTPase MNME; G protein, U3 90.57
2gag_A 965 Heterotetrameric sarcosine oxidase alpha-subunit; 89.38
3gee_A 476 MNME, tRNA modification GTPase MNME; G protein, cy 86.97
3geh_A 462 MNME, tRNA modification GTPase MNME; G protein, U3 86.0
3tfi_A369 GCVT-like aminomethyltransferase protein; demethyl 85.94
1xzp_A 482 Probable tRNA modification GTPase TRME; GTP-bindin 85.66
3gee_A 476 MNME, tRNA modification GTPase MNME; G protein, cy 84.35
1pj5_A830 N,N-dimethylglycine oxidase; channelling, FAD bind 82.15
>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A* Back     alignment and structure
Probab=100.00  E-value=5.8e-63  Score=517.65  Aligned_cols=304  Identities=20%  Similarity=0.270  Sum_probs=276.2

Q ss_pred             ceeeEEe-eccc----ccccccccCccCCcccccccccccccceeeeecCCC---CCCCCCCCCCCCCcchHHHHHHcCC
Q 020817            8 ATTHLIV-GSTS----RLHNTRTTKFFQNGVVLTQKKTLSLRRRRSASIPPT---AVLPFDLSPPPIDHDLLETVKSEGA   79 (321)
Q Consensus         8 ~~~~~~~-~~~~----~~~~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~p~~---~~r~~r~sp~~~~~~l~~~~~~~GA   79 (321)
                      .+|+||+ |.+.    .+|++||.+.+.+++|+++|..|+|++.|.++||++   ++|++|+||      ||++|+++||
T Consensus       371 ~la~li~~~~~~~dl~~~~~~Rf~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~tp------l~~~~~~~ga  444 (830)
T 1pj5_A          371 AMAELLTTGRSETDLGECDITRFEDVQLTPEYVSETSQQNFVEIYDVLHPLQPRLSPRNLRVSP------FHARHKELGA  444 (830)
T ss_dssp             HHHHHHHHSSCSSCCTTTBGGGCCGGGGSHHHHHHHHHHHHHTTTCCCCTTCCCSSSCCSBCCT------THHHHHHTTE
T ss_pred             HHHHHHhCCCCCccccccChhhhccccCCHHHHHHHHHHHHHHhhccCCCCCccccccccccCc------CHHHHHHcCC
Confidence            4577888 4442    389999998888999999999999999999999984   999999999      9999999999


Q ss_pred             eEec---CCcceeeCC----------------------------hHHHHHHHhhCcEEEeCCCceEEEEEcchHHHHHHH
Q 020817           80 KISG---EGIVETFGN----------------------------DGEALDAADNGVAAVDLSHFGRIRVSGDDRIQFLHN  128 (321)
Q Consensus        80 ~f~~---~~~p~~f~~----------------------------~~~E~~a~r~~vgl~Dls~~~~i~V~G~dA~~fLq~  128 (321)
                      +|.+   |++|.+|..                            +.+||+|+|++|+++|+|+|++|+|+|+||.+|||+
T Consensus       445 ~~~~~~g~~~p~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~a~r~~~gl~d~s~~~~~~v~G~da~~fL~~  524 (830)
T 1pj5_A          445 FFLEAGGWERPYWFEANAALLKEMPAEWLPPARDAWSGMFSSPIAAAEAWKTRTAVAMYDMTPLKRLEVSGPGALKLLQE  524 (830)
T ss_dssp             EEEEETTEEEEEEEGGGGGGGGGSCGGGCCCCCCHHHHTTCCTHHHHHHHHHHHSCEEEECTTSCEEEEESTTHHHHHHH
T ss_pred             EEEEECCEecccccCCcccccccccccccccccccccccccchhHHHHHHHHHhCeEEEEcCcEEEEEEECcCHHHHHHH
Confidence            9864   779999975                            779999999999999999999999999999999999


Q ss_pred             ccccCCCCCCCCcEEEEEEeCCCCcEEEEEEE-EEeCCeEEEEeCCcchHHHHHHHHHcccCC------CC-eEEEEecC
Q 020817          129 QSTANFEILREGQGCDTVFVTPTARTIDIAHA-WIMKNAVILVVSPLTCSSITEMLNKYVFFA------DK-VEIQDITK  200 (321)
Q Consensus       129 l~t~dv~~l~~G~~~~t~~ln~kG~i~d~~~~-~~~~d~~~L~~~~~~~~~~~~~L~~~~~~~------~~-V~i~d~t~  200 (321)
                      |+|||| .+++|+++|++|||++|+|+|++++ ++.++.|+|   ++..+.+++||++++.+.      .+ |+|+|+++
T Consensus       525 ~~t~dv-~l~~g~~~y~~~l~~~G~i~~d~~v~~~~~~~~~l---~~~~~~~~~~l~~~~~~~~~~~~~~~~v~i~d~s~  600 (830)
T 1pj5_A          525 LTTADL-AKKPGAVTYTLLLDHAGGVRSDITVARLSEDTFQL---GANGNIDTAYFERAARHQTQSGSATDWVQVRDTTG  600 (830)
T ss_dssp             HBSSCC-CSCTTBEEEEEEECTTSCEEEEEEEEEEETTEEEE---ECSSHHHHHHHHHHHHHHHHHSCTTCCCEEEECGG
T ss_pred             hccccc-cCCCCcEEEeEEECCCCEEEEeEEEEEEeCCEEEE---EeCHHHHHHHHHHHhhhcccccCCCCeEEEEEccC
Confidence            999999 8899999999999999999955554 567777877   344566999999998531      15 99999999


Q ss_pred             cEEEEEEeCCChHHHHhhcccCCCCC--CCCcceEEEEECCeeEEEEecCcCCCCeEEEEEcccCHHHHHHHHHhC----
Q 020817          201 QTCLFVVVGPKSNQVMRDLNLGDLVG--EAYGTHRHYSVNGMPITVGVGNVISEEGFSLLMSPAAAGSVWETLLSQ----  274 (321)
Q Consensus       201 ~~~~l~v~GP~a~~vL~~l~~~dl~~--~~~~~~~~~~i~g~~v~i~R~~~~Ge~G~el~~~~~~a~~l~~~L~~a----  274 (321)
                      ++++|+||||+|+++|++++..|+++  +||++++.+.+++.++++.|++|+||+||||++|.+++..+|++|+++    
T Consensus       601 ~~~~~~l~Gp~a~~~l~~~~~~dl~~~~~~~~~~~~~~~~g~~~~~~r~~~tge~g~ei~~~~~~~~~l~~~l~~ag~~~  680 (830)
T 1pj5_A          601 GTCCIGLWGPLARDLVSKVSDDDFTNDGLKYFRAKNVVIGGIPVTAMRLSYVGELGWELYTSADNGQRLWDALWQAGQPF  680 (830)
T ss_dssp             GEEEEEEESTTHHHHHTTTCCSCCSTTTSCTTBEEEEEETTEEEEEECCCTTSSSEEEEEEEHHHHHHHHHHHHHHHGGG
T ss_pred             CEEEEEEECcCHHHHHHHhcCcCCccccCCCceEEEEEECCEEEEEEECcccCCCcEEEEecHHHHHHHHHHHHhhhhhc
Confidence            99999999999999999998878865  899999999999999999999999999999999999999999999986    


Q ss_pred             CCcccCHHHHHHHHHHhcCCCCCCCCCCCcchhhcCCcccccCCCCC
Q 020817          275 GAVPMGSNAWEKLRIIKGRPAPGKELTNEFNVLEAGLWNSISLDKGS  321 (321)
Q Consensus       275 G~~~~G~~A~~slRiE~G~~~~g~d~~~~~~P~E~gL~~~V~f~KG~  321 (321)
                      |+.|+|..||++||||+|+|.||+|++++++|+|+||+++|+|+||+
T Consensus       681 ~~~~~g~~a~~~lRle~G~~~~g~d~~~~~~P~e~~l~~~v~~~kg~  727 (830)
T 1pj5_A          681 GVIAAGRAAFSSLRLEKGYRSWGTDMTTEHDPFEAGLGFAVKMAKES  727 (830)
T ss_dssp             TCEEECHHHHHHHHHHTTCCCBTTTBCTTSCTTTTTCGGGCCTTSSC
T ss_pred             CCEEehhhhhhhhhhhcCCccccccCCCCCCHHHCCCcCeeeCCCCC
Confidence            47899999999999999999999999999999999999999999985
>1vlo_A Aminomethyltransferase; NP417381, tetrahydrofolat dependent) of glycine cleavage system, structural genomics, protein structure initiative; HET: MSE; 1.70A {Escherichia coli K12} SCOP: b.44.2.1 d.250.1.1 PDB: 3a8j_A* 3a8i_A* 3a8k_A* Back     alignment and structure
>1yx2_A Aminomethyltransferase; glycine cleavage system T protein, alpha-beta, beta-barrel, structural genomics, PSI, protein structure initiative; 2.08A {Bacillus subtilis} Back     alignment and structure
>1wos_A Aminomethyltransferase; T-protein; 1.84A {Thermotoga maritima} SCOP: b.44.2.1 d.250.1.1 PDB: 1woo_A* 1wop_A* 1wor_A Back     alignment and structure
>3gir_A Aminomethyltransferase; glycine cleavage system, aminotransferase, structural genomics; 1.60A {Bartonella henselae} Back     alignment and structure
>1wsr_A Aminomethyltransferase; glycine-cleavage sytem; 2.00A {Homo sapiens} PDB: 1wsv_A* Back     alignment and structure
>3tfi_A GCVT-like aminomethyltransferase protein; demethylase, THF; 1.60A {Candidatus pelagibacter ubique} PDB: 3tfh_A 3tfj_A* Back     alignment and structure
>1v5v_A Aminomethyltransferase; glycine-cleavage sytem, structural riken structural genomics/proteomics initiative, RSGI; 1.50A {Pyrococcus horikoshii} SCOP: b.44.2.1 d.250.1.1 Back     alignment and structure
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A* Back     alignment and structure
>3ttg_A Putative aminomethyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.00A {Leptospirillum rubarum} Back     alignment and structure
>1vly_A SPOT PR51, unknown protein from 2D-PAGE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.30A {Escherichia coli} SCOP: b.44.2.1 d.250.1.1 PDB: 1nrk_A Back     alignment and structure
>2gag_C Heterotetrameric sarcosine oxidase gamma-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_C* Back     alignment and structure
>1x31_C Sarcosine oxidase gamma subunit; heterotetrameric sarcosine oxidase, flavoenzyme, oxidoreduct; HET: FAD NAD FMN; 2.15A {Corynebacterium SP} PDB: 1vrq_C* 3ad7_C* 3ad8_C* 3ad9_C* 3ada_C* Back     alignment and structure
>2gag_C Heterotetrameric sarcosine oxidase gamma-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_C* Back     alignment and structure
>1x31_C Sarcosine oxidase gamma subunit; heterotetrameric sarcosine oxidase, flavoenzyme, oxidoreduct; HET: FAD NAD FMN; 2.15A {Corynebacterium SP} PDB: 1vrq_C* 3ad7_C* 3ad8_C* 3ad9_C* 3ada_C* Back     alignment and structure
>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A* Back     alignment and structure
>3gir_A Aminomethyltransferase; glycine cleavage system, aminotransferase, structural genomics; 1.60A {Bartonella henselae} Back     alignment and structure
>1yx2_A Aminomethyltransferase; glycine cleavage system T protein, alpha-beta, beta-barrel, structural genomics, PSI, protein structure initiative; 2.08A {Bacillus subtilis} Back     alignment and structure
>1wos_A Aminomethyltransferase; T-protein; 1.84A {Thermotoga maritima} SCOP: b.44.2.1 d.250.1.1 PDB: 1woo_A* 1wop_A* 1wor_A Back     alignment and structure
>1v5v_A Aminomethyltransferase; glycine-cleavage sytem, structural riken structural genomics/proteomics initiative, RSGI; 1.50A {Pyrococcus horikoshii} SCOP: b.44.2.1 d.250.1.1 Back     alignment and structure
>1wsr_A Aminomethyltransferase; glycine-cleavage sytem; 2.00A {Homo sapiens} PDB: 1wsv_A* Back     alignment and structure
>1vly_A SPOT PR51, unknown protein from 2D-PAGE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.30A {Escherichia coli} SCOP: b.44.2.1 d.250.1.1 PDB: 1nrk_A Back     alignment and structure
>1vlo_A Aminomethyltransferase; NP417381, tetrahydrofolat dependent) of glycine cleavage system, structural genomics, protein structure initiative; HET: MSE; 1.70A {Escherichia coli K12} SCOP: b.44.2.1 d.250.1.1 PDB: 3a8j_A* 3a8i_A* 3a8k_A* Back     alignment and structure
>3ttg_A Putative aminomethyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.00A {Leptospirillum rubarum} Back     alignment and structure
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} Back     alignment and structure
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A* Back     alignment and structure
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* Back     alignment and structure
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} Back     alignment and structure
>3tfi_A GCVT-like aminomethyltransferase protein; demethylase, THF; 1.60A {Candidatus pelagibacter ubique} PDB: 3tfh_A 3tfj_A* Back     alignment and structure
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B* Back     alignment and structure
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* Back     alignment and structure
>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 321
d1vlya2241 d.250.1.1 (A:3-243) Hypothetical protein YgfZ, N-t 2e-27
d1vloa2274 d.250.1.1 (A:4-277) Glycine cleavage system T prot 7e-26
d1pj5a4315 d.250.1.1 (A:428-742) N,N-dimethylglycine oxidase 1e-25
d1wosa2278 d.250.1.1 (A:1-278) Glycine cleavage system T prot 8e-23
d1v5va2310 d.250.1.1 (A:3-312) Glycine cleavage system T prot 5e-19
>d1vlya2 d.250.1.1 (A:3-243) Hypothetical protein YgfZ, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 241 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Folate-binding domain
superfamily: Folate-binding domain
family: Aminomethyltransferase folate-binding domain
domain: Hypothetical protein YgfZ, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score =  105 bits (262), Expect = 2e-27
 Identities = 34/227 (14%), Positives = 63/227 (27%), Gaps = 12/227 (5%)

Query: 96  ALDAADNGVAAVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTI 155
              +A   +  + L  +    ++G D  +++  Q TA+   + E Q           +  
Sbjct: 9   PTASARLPLTLMTLDDWALATITGADSEKYMQGQVTADVSQMAEDQHLLAAHCDAKGKMW 68

Query: 156 DIAHAWIMKNAVILVVSPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQV 215
                +   +    +            L KY  F+          +  L  V G ++   
Sbjct: 69  SNLRLFRDGDGFAWIERRSVREPQLTELKKYAVFSKV--TIAPDDERVLLGVAGFQARAA 126

Query: 216 MRDLNLGDLVGEAYGTHRHYSVNGMPITVGVGNVISEEGFSLLMSPAAAGSVWETLLSQG 275
           + +L       E        +                    L+++  A  ++    L   
Sbjct: 127 LANLFSELPSKEKQVVKEGATTLLWFEH--------PAERFLIVTDEATANMLTDKLRGE 178

Query: 276 AVPMGSNAWEKLRIIKGRPAPGKELTNEFNVLEAGL--WNSISLDKG 320
           A    S  W  L I  G P      + +F      L     IS  KG
Sbjct: 179 AELNNSQQWLALNIEAGFPVIDAANSGQFIPQATNLQALGGISFKKG 225
>d1vloa2 d.250.1.1 (A:4-277) Glycine cleavage system T protein, GcvT {Escherichia coli [TaxId: 562]} Length = 274 Back     information, alignment and structure
>d1pj5a4 d.250.1.1 (A:428-742) N,N-dimethylglycine oxidase domain 3 {Arthrobacter globiformis [TaxId: 1665]} Length = 315 Back     information, alignment and structure
>d1wosa2 d.250.1.1 (A:1-278) Glycine cleavage system T protein, GcvT {Thermotoga maritima [TaxId: 2336]} Length = 278 Back     information, alignment and structure
>d1v5va2 d.250.1.1 (A:3-312) Glycine cleavage system T protein, GcvT {Pyrococcus horikoshii [TaxId: 53953]} Length = 310 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query321
d1pj5a4315 N,N-dimethylglycine oxidase domain 3 {Arthrobacter 100.0
d1wosa2278 Glycine cleavage system T protein, GcvT {Thermotog 100.0
d1v5va2310 Glycine cleavage system T protein, GcvT {Pyrococcu 100.0
d1vloa2274 Glycine cleavage system T protein, GcvT {Escherich 100.0
d1vlya2241 Hypothetical protein YgfZ, N-terminal domain {Esch 100.0
d1xzpa3117 TrmE formyl-THF-binding domain {Thermotoga maritim 94.69
d1xzpa3117 TrmE formyl-THF-binding domain {Thermotoga maritim 93.71
d1vlya2241 Hypothetical protein YgfZ, N-terminal domain {Esch 93.15
d1v5va2 310 Glycine cleavage system T protein, GcvT {Pyrococcu 92.11
d1wosa2 278 Glycine cleavage system T protein, GcvT {Thermotog 91.56
d1vloa2 274 Glycine cleavage system T protein, GcvT {Escherich 87.78
d1pj5a4 315 N,N-dimethylglycine oxidase domain 3 {Arthrobacter 80.39
>d1pj5a4 d.250.1.1 (A:428-742) N,N-dimethylglycine oxidase domain 3 {Arthrobacter globiformis [TaxId: 1665]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Folate-binding domain
superfamily: Folate-binding domain
family: Aminomethyltransferase folate-binding domain
domain: N,N-dimethylglycine oxidase domain 3
species: Arthrobacter globiformis [TaxId: 1665]

Probab=100.00  E-value=1.1e-63  Score=466.83  Aligned_cols=258  Identities=23%  Similarity=0.317  Sum_probs=238.2

Q ss_pred             CCCCCCCCCCCcchHHHHHHcCCeEec---CCcceeeCC----------------------------hHHHHHHHhhCcE
Q 020817           57 LPFDLSPPPIDHDLLETVKSEGAKISG---EGIVETFGN----------------------------DGEALDAADNGVA  105 (321)
Q Consensus        57 r~~r~sp~~~~~~l~~~~~~~GA~f~~---~~~p~~f~~----------------------------~~~E~~a~r~~vg  105 (321)
                      ||+|+||      ||++|+++||+|++   |++|.+|..                            +.+||+|||++||
T Consensus         1 R~lr~sp------l~~~h~~~GA~f~~~~Gwe~P~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~E~~avR~~vg   74 (315)
T d1pj5a4           1 RNLRVSP------FHARHKELGAFFLEAGGWERPYWFEANAALLKEMPAEWLPPARDAWSGMFSSPIAAAEAWKTRTAVA   74 (315)
T ss_dssp             CCSBCCT------THHHHHHTTEEEEEETTEEEEEEEGGGGGGGGGSCGGGCCCCCCHHHHTTCCTHHHHHHHHHHHSCE
T ss_pred             CCCccCc------cHHHHHHcCCEEEEecceecccccCcCCccccccccccccccccccccccccHHHHHHHHHHHHhcc
Confidence            8999999      99999999999874   778888842                            6899999999999


Q ss_pred             EEeCCCceEEEEEcchHHHHHHHccccCCCCCCCCcEEEEEEeCCCCcEE-EEEEEEEeCCeEEEEeCCcchHHHHHHHH
Q 020817          106 AVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTI-DIAHAWIMKNAVILVVSPLTCSSITEMLN  184 (321)
Q Consensus       106 l~Dls~~~~i~V~G~dA~~fLq~l~t~dv~~l~~G~~~~t~~ln~kG~i~-d~~~~~~~~d~~~L~~~~~~~~~~~~~L~  184 (321)
                      |+|+|+|++|+|+|+||.+|||+++|||++. ++|+++||+|||++|+|+ |.+++++.+++|+|++++.....+..|+.
T Consensus        75 lfD~S~~g~i~v~G~da~~fL~~l~t~di~~-~~G~~~yt~~ln~~Ggi~~D~~v~r~~~~~f~l~~~~~~~~~~~~~~~  153 (315)
T d1pj5a4          75 MYDMTPLKRLEVSGPGALKLLQELTTADLAK-KPGAVTYTLLLDHAGGVRSDITVARLSEDTFQLGANGNIDTAYFERAA  153 (315)
T ss_dssp             EEECTTSCEEEEESTTHHHHHHHHBSSCCCS-CTTBEEEEEEECTTSCEEEEEEEEEEETTEEEEECSSHHHHHHHHHHH
T ss_pred             eeccccceeEEeeccchHHHhhhhhcccccc-ccCceeEEEeeccccCeeeeeeeeecccccccccccchhhhhhhhhhh
Confidence            9999999999999999999999999999985 889999999999999999 55667789999999998888888877776


Q ss_pred             Hccc----CCCCeEEEEecCcEEEEEEeCCChHHHHhhcccCCCC--CCCCcceEEEEECCeeEEEEecCcCCCCeEEEE
Q 020817          185 KYVF----FADKVEIQDITKQTCLFVVVGPKSNQVMRDLNLGDLV--GEAYGTHRHYSVNGMPITVGVGNVISEEGFSLL  258 (321)
Q Consensus       185 ~~~~----~~~~V~i~d~t~~~~~l~v~GP~a~~vL~~l~~~dl~--~~~~~~~~~~~i~g~~v~i~R~~~~Ge~G~el~  258 (321)
                      ++..    ...+|+++|+|+++++|+||||+|+++|++++..+++  ++||++++.+.++|.+|++.|++|+||+||||+
T Consensus       154 ~~~~~~~~~~~~v~i~d~t~~~~~laiqGP~s~~vL~~l~~~~~~~~~~~~~~~~~~~i~g~~v~i~R~g~tGE~G~Ei~  233 (315)
T d1pj5a4         154 RHQTQSGSATDWVQVRDTTGGTCCIGLWGPLARDLVSKVSDDDFTNDGLKYFRAKNVVIGGIPVTAMRLSYVGELGWELY  233 (315)
T ss_dssp             HHHHHHSCTTCCCEEEECGGGEEEEEEESTTHHHHHTTTCCSCCSTTTSCTTBEEEEEETTEEEEEECCCTTSSSEEEEE
T ss_pred             hhhhhcccccccceeEecCcceeeeeecCchHHHHHHHccccccccccccccceeEEEECCEEEEEEecCccCCCeEEec
Confidence            5542    1346999999999999999999999999999988876  489999999999999999999999999999999


Q ss_pred             EcccCHHHHHHHHHhCC----CcccCHHHHHHHHHHhcCCCCCCCCCCCcchhhcCCcccccCCCCC
Q 020817          259 MSPAAAGSVWETLLSQG----AVPMGSNAWEKLRIIKGRPAPGKELTNEFNVLEAGLWNSISLDKGS  321 (321)
Q Consensus       259 ~~~~~a~~l~~~L~~aG----~~~~G~~A~~slRiE~G~~~~g~d~~~~~~P~E~gL~~~V~f~KG~  321 (321)
                      +|.+++..||+.|+++|    ++|+|..|+++||||||||.||+|++++++|+|+||+|+|||+|+|
T Consensus       234 ~~~~~a~~l~~~l~~ag~~~gi~p~G~~A~d~LRlE~G~~~~g~d~~~~~~P~EagL~~~v~~~K~~  300 (315)
T d1pj5a4         234 TSADNGQRLWDALWQAGQPFGVIAAGRAAFSSLRLEKGYRSWGTDMTTEHDPFEAGLGFAVKMAKES  300 (315)
T ss_dssp             EEHHHHHHHHHHHHHHHGGGTCEEECHHHHHHHHHHTTCCCBTTTBCTTSCTTTTTCGGGCCTTSSC
T ss_pred             ccHHHHHHHHHHHHhhhhcCCcEecCHHHHHHHHHHcCCCcccccCCCCCCHHHcCcchhhcCCCCC
Confidence            99999999999999875    6899999999999999999999999999999999999999999986
>d1wosa2 d.250.1.1 (A:1-278) Glycine cleavage system T protein, GcvT {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1v5va2 d.250.1.1 (A:3-312) Glycine cleavage system T protein, GcvT {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1vloa2 d.250.1.1 (A:4-277) Glycine cleavage system T protein, GcvT {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vlya2 d.250.1.1 (A:3-243) Hypothetical protein YgfZ, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1xzpa3 d.250.1.2 (A:1-117) TrmE formyl-THF-binding domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1xzpa3 d.250.1.2 (A:1-117) TrmE formyl-THF-binding domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1vlya2 d.250.1.1 (A:3-243) Hypothetical protein YgfZ, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1v5va2 d.250.1.1 (A:3-312) Glycine cleavage system T protein, GcvT {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1wosa2 d.250.1.1 (A:1-278) Glycine cleavage system T protein, GcvT {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1vloa2 d.250.1.1 (A:4-277) Glycine cleavage system T protein, GcvT {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1pj5a4 d.250.1.1 (A:428-742) N,N-dimethylglycine oxidase domain 3 {Arthrobacter globiformis [TaxId: 1665]} Back     information, alignment and structure