Citrus Sinensis ID: 020831

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-
Protein Sequence
MDSTWVDTSLDLNLNLLNHSSEVPKREFKGDHFAEFEERASVKQETGILVEELNRISTENKKLNEMLSILCKNYNNLRQQYMDLMNKNTENEVGISKKRKAESEDHCHTIGFNVHATESSTSTDEESCKRPKDNNTKAKVSRFYVRASDSNSTLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSAEDPSILVATYEGEHNHPQPTDSKAELSLSPSHVATIGNPIHVSAASSMLSASPTATLDMIQPGFLFDDAKKSSVQQIEAPAIHQILVQQMASNLTKDPNFTAALAAAISGRFADQARTQRWSL
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccEcccccccccccccccccccccEEccccccEEEEcccccEEEEEEEccccccccccccccccHHHHcccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccccccccHHHcccEEEccccccccEEEEcccccccccHEEEEcccccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHcccccccccccccc
Coil and Loop (DISEMBL)
mdstwvdtsLDLNLNLlnhssevpkrefkgdhfaefeerasvkQETGILVEELNRISTENKKLNEMLSILCKNYNNLRQQYMDLMNKNTENEVGISkkrkaesedhchtigfnvhatesststdeesckrpkdnntkakVSRFYvrasdsnstliVKDGyqwrkygqkvtrdnpsprayfkcsfapscpvkkkvqrsaedpsILVATyegehnhpqptdskaelslspshvatignpIHVSAAssmlsasptatldmiqpgflfddakkssvqqiEAPAIHQILVQQMASNLTKDPNFTAALAAAISGRFADQARTQRWSL
Flexible Loop (DISEMBL)
MDSTWVDTSLDLNLNLLNHSSEVPKREFKGDHFAEFeerasvkqetgilVEELNRISTENKKLNEMLSILCKNYNNLRQQYMDLMNKNTENEVGISKKRKAESEDHCHTIgfnvhatesststdeesckrpkdnntkakvsrfyvrasdsnstlivkdgyqwrkyGQKVTRDNPSPRAYFkcsfapscpvkkkvqRSAEDPSILVATYEGEHNHPQPTDSKAELSLSPSHVATIGNPIHVSAASSMLSASPTATLDMIQPGFLFDDAKKSSVQQIEAPAIHQILVQQMASNLTKDPNFTAALAAAISGRFADQARTQRWSL
Low Complexity Region (SEG)
MDSTWVDTSldlnlnllnHSSEVPKREFKGDHFAEFEERASVKQETGILVEELNRISTENKKLNEMLSILCKNYNNLRQQYMDLMNKNTENEVGISKKRKAESEDHCHTIGFNVHAtesststdeesCKRPKDNNTKAKVSRFYVRASDSNSTLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSAEDPSILVATYEGEHNHPQPTDSKAELSLSPSHVATIGNPIHVSAASSMLSASPTATLDMIQPGFLFDDAKKSSVQQIEAPAIHQILVQQMASNLTKDPNFTAALAAAISGRFADQARTQRWSL
Disordered region (IsUnstruct)
*********LDLNLNLL****************************TGILVEELNRISTENKKLNEMLSILCKNYNNLRQQYMDL************************TIGF******************************FYVRASDSNSTLIVKDGYQWRKYGQKVT******RAYFKCSFAPSC******************************************************************LDMIQPGFLFDDA****VQQIEAPAIHQILVQQMASNLTKDPNFTAALAAAIS**************
Disordered Region (DISOPRED)
*DSTWVDTSLDLNLN****************************************************************************************************************************************STLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSAEDPSILVATYEGEHN********************************************************************************KDPNFTAALAAAIS**************
Disordered Region (DISEMBL)
MDSTWVDTSLDLNLNLLNHSSEVPKREFKGDHFAEFEERASVKQETGILVEELNRISTENKKLNEMLSILCKNYNNLRQQYMDLMNKNTENEVG***********HCHTIGFNVHA*******************TKAKVSRFYVRASDSNSTLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSC***********DPSILVATYEGE*************SLSPSHVATIGNPIHVSAASSMLSASPTATLDMIQPGFLFDDAKKSSVQQIEAPAIHQILVQQMASNLTKDPNFTAALAAAISGRFADQARTQRWSL
Disordered Region (DISPRO)
****WVDTSLDLNLNLLNHSSEVPKREFKGDHFAEFEERASVKQETGILVEELN**************************************************************************************SRFYVRASDSNSTLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSAEDPSILVATYEGEH********************************************************************HQ*LVQQMASNLTKDPNFTAALAAAISGRFA**********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDSTWVDTSLDLNLNLLNHSSEVPKREFKGDHFAEFEERASVKQETGILVEELNRISTExxxxxxxxxxxxxxxxxxxxxxxxxxxxNTENEVGISKKRKAESEDHCHTIGFNVHATESSTSTDEESCKRPKDNNTKAKVSRFYVRASDSNSTLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSAEDPSILVATYEGEHNHPQPTDSKAELSLSPSHVATIGNPIHVSAASSMLSASPTATLDMIQPGFLFDDAKKSSVQQIEAPAIHQILVQQMASNLTKDPNFTAALAAAISGRFADQARTQRWSL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	321	2.2.26 [Sep-21-2011]
Q9SAH7	302	Probable WRKY transcripti	yes	no	0.884	0.940	0.474	2e-72
Q9C5T4	310	WRKY transcription factor	no	no	0.897	0.929	0.431	5e-63
Q9SK33	271	Probable WRKY transcripti	no	no	0.788	0.933	0.439	2e-57
Q9C519	553	WRKY transcription factor	no	no	0.844	0.490	0.290	1e-24
Q9ZSI7	489	Probable WRKY transcripti	no	no	0.532	0.349	0.366	1e-23
Q9C9F0	374	Probable WRKY transcripti	no	no	0.261	0.224	0.561	3e-23
Q9XEC3	528	Probable WRKY transcripti	no	no	0.367	0.223	0.445	1e-22
Q93WT0	538	Probable WRKY transcripti	no	no	0.236	0.141	0.580	3e-22
Q8VWV6	480	Probable WRKY transcripti	no	no	0.242	0.162	0.562	6e-22
Q9LXG8	548	Probable WRKY transcripti	no	no	0.239	0.140	0.556	5e-21

>sp|Q9SAH7|WRK40_ARATH Probable WRKY transcription factor 40 OS=Arabidopsis thaliana GN=WRKY40 PE=1 SV=1

 Score =  272 bits (696), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 156/329 (47%), Positives = 208/329 (63%), Gaps = 45/329 (13%)

Query: 3   STWVDTSLDLNLNLLNHSSEVPKREFKGDHFAEFEERASVKQE--TGILVEELNRISTEN 60
           S+ VDTSLDL + +                      R  V+++  T  LVEELNR+S EN
Sbjct: 6   SSLVDTSLDLTIGVT---------------------RMRVEEDPPTSALVEELNRVSAEN 44

Query: 61  KKLNEMLSILCKNYNNLRQQYMDLMNKNT---ENEVGISKKRKAESED---HCHTIGFNV 114
           KKL+EML+++C NYN LR+Q M+ +NK+     +++   KKRK+ + +    C  IG   
Sbjct: 45  KKLSEMLTLMCDNYNVLRKQLMEYVNKSNITERDQISPPKKRKSPAREDAFSCAVIGG-- 102

Query: 115 HATESSTSTDEESCKRPKDNNT-KAKVSRFYVRASDSNSTLIVKDGYQWRKYGQKVTRDN 173
            +  SST  DE  CK+ ++    K KVSR Y +   S++TL+VKDGYQWRKYGQKVTRDN
Sbjct: 103 VSESSSTDQDEYLCKKQREETVVKEKVSRVYYKTEASDTTLVVKDGYQWRKYGQKVTRDN 162

Query: 174 PSPRAYFKCSFAPSCPVKKKVQRSAEDPSILVATYEGEHNHPQPT--DSKAELSLSPSHV 231
           PSPRAYFKC+ APSC VKKKVQRS ED S+LVATYEGEHNHP P+  DS   L+   SH 
Sbjct: 163 PSPRAYFKCACAPSCSVKKKVQRSVEDQSVLVATYEGEHNHPMPSQIDSNNGLNRHISHG 222

Query: 232 ATIGNPIHVSAASSMLSASPTATLDMIQPGFLFDDAKK--SSVQQIEAPAIHQILVQQMA 289
            +   P+  +  SS+    P  T+DMI+       +KK  S   +I+ P + ++LV+QMA
Sbjct: 223 GSASTPVAANRRSSL--TVPVTTVDMIE-------SKKVTSPTSRIDFPQVQKLLVEQMA 273

Query: 290 SNLTKDPNFTAALAAAISGRFADQARTQR 318
           S+LTKDPNFTAALAAA++G+   Q  T++
Sbjct: 274 SSLTKDPNFTAALAAAVTGKLYQQNHTEK 302

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9C5T4|WRK18_ARATH WRKY transcription factor 18 OS=Arabidopsis thaliana GN=WRKY18 PE=1 SV=2

 Score =  241 bits (615), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 146/338 (43%), Positives = 204/338 (60%), Gaps = 50/338 (14%)

Query: 1   MD-STWVDTSLDLNLNLLNHSSEVPKREFKGDHFAEFEERASVKQETGI-LVEELNRIST 58
           MD S+++D SLDLN N    S+++PK+E         + +   + E+   L EELNR+++
Sbjct: 1   MDGSSFLDISLDLNTNPF--SAKLPKKEVSVLASTHLKRKWLEQDESASELREELNRVNS 58

Query: 59  ENKKLNEMLSILCKNYNNLRQQYMDLMNKNT----ENEVGISKKRKAESEDHCHTIGFNV 114
           ENKKL EML+ +C++YN L      L ++ +    + ++ I K+++   E     IG + 
Sbjct: 59  ENKKLTEMLARVCESYNELHNHLEKLQSRQSPEIEQTDIPIKKRKQDPDEFLGFPIGLSS 118

Query: 115 HATESSTSTDEE--------------SCKRP-KDNNTKAKVSRFYVRASDSNSTLIVKDG 159
             TE+S+S ++               SCKRP  D+  KAKVS  YV    S+++L VKDG
Sbjct: 119 GKTENSSSNEDHHHHHQQHEQKNQLLSCKRPVTDSFNKAKVSTVYVPTETSDTSLTVKDG 178

Query: 160 YQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSAEDPSILVATYEGEHNHPQPTD 219
           +QWRKYGQKVTRDNPSPRAYF+CSFAPSCPVKKKVQRSAEDPS+LVATYEG HNH  P  
Sbjct: 179 FQWRKYGQKVTRDNPSPRAYFRCSFAPSCPVKKKVQRSAEDPSLLVATYEGTHNHLGPNA 238

Query: 220 SKAELSLSPSHVATIGNPIHVSAASSMLSASPTATLDMIQPGFLFDDAKKSSVQQIEAP- 278
           S+ +                    ++    S T TLD++      +   + ++++ E   
Sbjct: 239 SEGD--------------------ATSQGGSSTVTLDLV------NGCHRLALEKNERDN 272

Query: 279 AIHQILVQQMASNLTKDPNFTAALAAAISGRFADQART 316
            + ++L+QQMAS+LTKD  FTAALAAAISGR  +Q+RT
Sbjct: 273 TMQEVLIQQMASSLTKDSKFTAALAAAISGRLMEQSRT 310

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Positively modulates defense-related gene expression and disease resistance.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SK33|WRK60_ARATH Probable WRKY transcription factor 60 OS=Arabidopsis thaliana GN=WRKY60 PE=1 SV=1

 Score =  223 bits (567), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 135/307 (43%), Positives = 175/307 (57%), Gaps = 54/307 (17%)

Query: 17  LNHSSEVPKREFKGDHFAEFEERASVKQET-GILVEELNRISTENKKLNEMLSILCKNYN 75
           L+ S ++PKRE         E++  VK E   +L +E+NR+++ENKKL EML+ +C+ Y 
Sbjct: 12  LHFSGKLPKREVSASASKVVEKKWLVKDEKRNMLQDEINRVNSENKKLTEMLARVCEKYY 71

Query: 76  NLRQQYMDLMNKNTENEVG-----ISKKRKAESEDHCHT-IGFNVHATESSTSTDEESCK 129
            L     +L ++ +   V      ++ KRK E ++   + IG ++   E+ T        
Sbjct: 72  ALNNLMEELQSRKSPESVNFQNKQLTGKRKQELDEFVSSPIGLSLGPIENIT-------- 123

Query: 130 RPKDNNTKAKVSRFYVRASDSNSTLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCP 189
                N KA VS  Y  A  S+++L VKDGYQWRKYGQK+TRDNPSPRAYF+CSF+PSC 
Sbjct: 124 -----NDKATVSTAYFAAEKSDTSLTVKDGYQWRKYGQKITRDNPSPRAYFRCSFSPSCL 178

Query: 190 VKKKVQRSAEDPSILVATYEGEHNHPQPTDSKAELSLSPSHVATIGNPIHVSAASSMLSA 249
           VKKKVQRSAEDPS LVATYEG HNH  P            H                 S 
Sbjct: 179 VKKKVQRSAEDPSFLVATYEGTHNHTGP------------HA----------------SV 210

Query: 250 SPTATLDMIQPGFLFDDAKKSSVQQIEAPAIHQILVQQMASNLTKDPNFTAALAAAISGR 309
           S T  LD++Q G    + KK      E   I ++LVQQMAS+LTKDP FTAALA AISGR
Sbjct: 211 SRTVKLDLVQGGLEPVEEKK------ERGTIQEVLVQQMASSLTKDPKFTAALATAISGR 264

Query: 310 FADQART 316
             + +RT
Sbjct: 265 LIEHSRT 271

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C519|WRKY6_ARATH WRKY transcription factor 6 OS=Arabidopsis thaliana GN=WRKY6 PE=1 SV=1

 Score =  114 bits (285), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 114/393 (29%), Positives = 165/393 (41%), Gaps = 122/393 (31%)

Query: 34  AEFEERASVKQETGILVEELNRISTENKKLNEMLSILCKNYNNLRQQYMDLMNKNTE-NE 92
           +E E++ + K E   L +EL +++ +N+KL E+L+ +  +Y +L+   + LM +  + N 
Sbjct: 146 SEMEDKRA-KNELVKLQDELKKMTMDNQKLRELLTQVSNSYTSLQMHLVSLMQQQQQQNN 204

Query: 93  VGISKKRKAE---------------------------SEDHCHTIGFNVHATESST---- 121
             I    K E                           SED   + G +     S+     
Sbjct: 205 KVIEAAEKPEETIVPRQFIDLGPTRAVGEAEDVSNSSSEDRTRSGGSSAAERRSNGKRLG 264

Query: 122 ---STDEESCKRPKDNNTK-----------AKVSRFYVRASDSNSTLIVKDGYQWRKYGQ 167
              S + ES K  K N+T             + +R  VRA   +   ++ DG QWRKYGQ
Sbjct: 265 REESPETESNKIQKVNSTTPTTFDQTAEATMRKARVSVRAR--SEAPMISDGCQWRKYGQ 322

Query: 168 KVTRDNPSPRAYFKCSFAPSCPVKKKVQRSAEDPSILVATYEGEHNHPQPTDSKAE---- 223
           K+ + NP PRAY++C+ A  CPV+K+VQR AED SIL+ TYEG HNHP P  + A     
Sbjct: 323 KMAKGNPCPRAYYRCTMATGCPVRKQVQRCAEDRSILITTYEGNHNHPLPPAAVAMASTT 382

Query: 224 -------LSLSPSHVATIGNPIHV--------SAASSMLSAS---PTATLDM-------- 257
                  LS S S    + NP ++        S + + +SAS   PT TLD+        
Sbjct: 383 TAAANMLLSGSMSSHDGMMNPTNLLARAVLPCSTSMATISASAPFPTVTLDLTHSPPPPN 442

Query: 258 ------------------------------IQPGF--------LFDDAKKSSVQQIEAPA 279
                                         + PG         L++ +K S +Q      
Sbjct: 443 GSNPSSSAATNNNHNSLMQRPQQQQQQMTNLPPGMLPHVIGQALYNQSKFSGLQFSGGSP 502

Query: 280 IHQILVQQMA-----SNLTKDPNFTAALAAAIS 307
                 Q  A     + LT DPNFTAALAA IS
Sbjct: 503 STAAFSQSHAVADTITALTADPNFTAALAAVIS 535

Transcription factor involved in the control of processes related to senescence and pathogen defense. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Activates the transcription of the SIRK gene and represses its own expression and that of the WRKY42 genes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZSI7|WRK47_ARATH Probable WRKY transcription factor 47 OS=Arabidopsis thaliana GN=WRKY47 PE=2 SV=2

 Score =  110 bits (275), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 77/210 (36%), Positives = 110/210 (52%), Gaps = 39/210 (18%)

Query: 42  VKQETGILVEELNRISTENKKLNEMLSILCKNYNNLRQQYM--------DLMNKNTEN-- 91
            K +   L  EL R+  EN KL  +L  + ++YN+L+++ +         L +K  E+  
Sbjct: 95  TKTQISRLKLELERLHEENHKLKHLLDEVSESYNDLQRRVLLARQTQVEGLHHKQHEDVP 154

Query: 92  EVGISK---KRKAESEDH---CHTI---------GFNVHATESST-------STDEESCK 129
           + G S+    R+ +  +H     T+         G ++H     T       ST+ E  +
Sbjct: 155 QAGSSQALENRRPKDMNHETPATTLKRRSPDDVDGRDMHRGSPKTPRIDQNKSTNHEEQQ 214

Query: 130 RPKDN--NTKAKVSRFYVRASDSNSTLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPS 187
            P D     KA+VS   VRA    +T  V DG QWRKYGQK+ + NP PRAY++C+ A  
Sbjct: 215 NPHDQLPYRKARVS---VRARSDATT--VNDGCQWRKYGQKMAKGNPCPRAYYRCTMAVG 269

Query: 188 CPVKKKVQRSAEDPSILVATYEGEHNHPQP 217
           CPV+K+VQR AED +IL  TYEG HNHP P
Sbjct: 270 CPVRKQVQRCAEDTTILTTTYEGNHNHPLP 299

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C9F0|WRKY9_ARATH Probable WRKY transcription factor 9 OS=Arabidopsis thaliana GN=WRKY9 PE=2 SV=1

 Score =  109 bits (272), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 50/89 (56%), Positives = 61/89 (68%), Gaps = 5/89 (5%)

Query: 134 NNTKAKVSRFYVRASDSNSTLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKK 193
            N KA+VS   VRA    +T+   DG QWRKYGQK  + NP PRAY++C+ AP CPV+K+
Sbjct: 217 GNRKARVS---VRARCETATM--NDGCQWRKYGQKTAKGNPCPRAYYRCTVAPGCPVRKQ 271

Query: 194 VQRSAEDPSILVATYEGEHNHPQPTDSKA 222
           VQR  ED SIL+ TYEG HNHP P  + A
Sbjct: 272 VQRCLEDMSILITTYEGTHNHPLPVGATA 300

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9XEC3|WRK42_ARATH Probable WRKY transcription factor 42 OS=Arabidopsis thaliana GN=WRKY42 PE=2 SV=1

 Score =  107 bits (267), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 65/146 (44%), Positives = 89/146 (60%), Gaps = 28/146 (19%)

Query: 137 KAKVSRFYVRASDSNSTLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQR 196
           KA+VS   VRA   +   ++ DG QWRKYGQK+ + NP PRAY++C+ A  CPV+K+VQR
Sbjct: 277 KARVS---VRAR--SEAPMLSDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQR 331

Query: 197 SAEDPSILVATYEGEHNHPQP---------TDSKAELSLSPSHVAT---IGNPIHVSA-- 242
            AED +IL+ TYEG HNHP P         T + A + LS S ++    + NP ++ A  
Sbjct: 332 CAEDRTILITTYEGNHNHPLPPAAMNMASTTTAAASMLLSGSTMSNQDGLMNPTNLLART 391

Query: 243 ----ASSM--LSAS---PTATLDMIQ 259
               +SSM  +SAS   PT TLD+ +
Sbjct: 392 ILPCSSSMATISASAPFPTITLDLTE 417

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93WT0|WRK31_ARATH Probable WRKY transcription factor 31 OS=Arabidopsis thaliana GN=WRKY31 PE=2 SV=1

 Score =  105 bits (263), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 47/81 (58%), Positives = 59/81 (72%), Gaps = 5/81 (6%)

Query: 137 KAKVSRFYVRASDSNSTLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQR 196
           KA+VS   VRA   +   ++ DG QWRKYGQK+ + NP PRAY++C+ A  CPV+K+VQR
Sbjct: 282 KARVS---VRAR--SEAAMISDGCQWRKYGQKMAKGNPCPRAYYRCTMAGGCPVRKQVQR 336

Query: 197 SAEDPSILVATYEGEHNHPQP 217
            AED SIL+ TYEG HNHP P
Sbjct: 337 CAEDRSILITTYEGNHNHPLP 357

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VWV6|WRK61_ARATH Probable WRKY transcription factor 61 OS=Arabidopsis thaliana GN=WRKY61 PE=2 SV=1

 Score =  105 bits (261), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 45/80 (56%), Positives = 58/80 (72%), Gaps = 2/80 (2%)

Query: 138 AKVSRFYVRASDSNSTLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRS 197
            K +R  VR+     T+   DG QWRKYGQK+ + NP PRAY++C+ A SCPV+K+VQR 
Sbjct: 174 VKKTRVSVRSRCETPTM--NDGCQWRKYGQKIAKGNPCPRAYYRCTIAASCPVRKQVQRC 231

Query: 198 AEDPSILVATYEGEHNHPQP 217
           +ED SIL++TYEG HNHP P
Sbjct: 232 SEDMSILISTYEGTHNHPLP 251

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LXG8|WRK72_ARATH Probable WRKY transcription factor 72 OS=Arabidopsis thaliana GN=WRKY72 PE=2 SV=1

 Score =  102 bits (253), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 44/79 (55%), Positives = 56/79 (70%), Gaps = 2/79 (2%)

Query: 139 KVSRFYVRASDSNSTLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSA 198
           K +R  VRA     T+   DG QWRKYGQK+ + NP PRAY++C+ AP CPV+K+VQR A
Sbjct: 211 KRARVCVRARCDTPTM--NDGCQWRKYGQKIAKGNPCPRAYYRCTVAPGCPVRKQVQRCA 268

Query: 199 EDPSILVATYEGEHNHPQP 217
           +D SIL+ TYEG H+H  P
Sbjct: 269 DDMSILITTYEGTHSHSLP 287

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	321
112819971	313	WRKY transcription factor 2 [Gossypium h	0.953	0.977	0.594	3e-91
224141957	318	predicted protein [Populus trichocarpa]	0.968	0.977	0.576	8e-91
346456324	311	WRKY transcription factor 2-7 [Dimocarpu	0.859	0.887	0.653	3e-90
259121383	320	WRKY transcription factor 9 [(Populus to	0.965	0.968	0.544	1e-85
315272006	317	WRKY transcription factor 3 [Vitis vinif	0.968	0.981	0.547	3e-84
224089360	320	predicted protein [Populus trichocarpa]	0.965	0.968	0.541	4e-84
345104746	319	WRKY3 transcription factor [Vitis pseudo	0.968	0.974	0.547	7e-84
224115864	318	predicted protein [Populus trichocarpa]	0.953	0.962	0.539	8e-84
225430340	317	PREDICTED: probable WRKY transcription f	0.968	0.981	0.544	1e-83
147774185	317	hypothetical protein VITISV_022504 [Viti	0.968	0.981	0.544	4e-83

>gi|112819971|gb|ABI23959.1| WRKY transcription factor 2 [Gossypium hirsutum]

 Score =  341 bits (874), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 188/316 (59%), Positives = 243/316 (76%), Gaps = 10/316 (3%)

Query: 1   MDSTWVDTSLDLNLNLLNHSSEVPKREFKGDHFAEFEERASVKQETGILVEELNRISTEN 60
           M+STWVDT+LDLN+N  +++ +V KRE  G   A+ + +  VKQETG LVEELNRI  EN
Sbjct: 1   MESTWVDTTLDLNINSSHNTIQVLKRESSG-KLADSDVKVPVKQETGALVEELNRIIAEN 59

Query: 61  KKLNEMLSILCKNYNNLRQQYMDLMNKNTENEV--GISKKRKAESEDHCHTIGFNVHATE 118
           KKL EML++LC+ Y++L+ QYM+L+++N+ ++     SKKRKAE ED+   IGF+  A E
Sbjct: 60  KKLTEMLTVLCERYSSLQNQYMELVSRNSGSDATAATSKKRKAECEDYVPMIGFSGKA-E 118

Query: 119 SSTSTDEESCKRPKDNNTKAKVSRFYVRASDSNSTLIVKDGYQWRKYGQKVTRDNPSPRA 178
           SS S DE+SCK+PKD   KAK+SR YVR + S+++LIV+DGYQWRKYGQKVTRDNPSPRA
Sbjct: 119 SSFS-DEDSCKKPKDC-IKAKISRAYVRPNPSDNSLIVRDGYQWRKYGQKVTRDNPSPRA 176

Query: 179 YFKCSFAPSCPVKKKVQRSAEDPSILVATYEGEHNHPQPTDSKAELSLSPSHVAT--IGN 236
           YFKCSFAPSCPVKKKVQRSAEDPSILVATYEGEHNH Q +   A  SLSP+   +     
Sbjct: 177 YFKCSFAPSCPVKKKVQRSAEDPSILVATYEGEHNHEQHS-PPALSSLSPNGGTSNPRSA 235

Query: 237 PIHVSAASSMLSASPTATLDMIQPGFLFDDAKKSSVQQIEAPAIHQILVQQMASNLTKDP 296
           P+  S+++   S+ PT TL++++P  L +D +  + QQ++ PAI QILVQQMA++LT+DP
Sbjct: 236 PVSSSSSAPAKSSPPTVTLELMKPTGLGNDTQNPT-QQVDEPAIQQILVQQMAASLTRDP 294

Query: 297 NFTAALAAAISGRFAD 312
           NFTAALA+AISG+  D
Sbjct: 295 NFTAALASAISGKVLD 310

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224141957|ref|XP_002324327.1| predicted protein [Populus trichocarpa] gi|222865761|gb|EEF02892.1| predicted protein [Populus trichocarpa]

 Score =  339 bits (870), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 188/326 (57%), Positives = 239/326 (73%), Gaps = 15/326 (4%)

Query: 1   MDSTWVDTSLDLNLNLLNHSSEVPKR--EFKGDHFAEFEERASVKQE--TGILVEELNRI 56
           M+S+WV+TSLDLN+N   H +E  ++  +F+G      E++  VK E   G+LVEEL R+
Sbjct: 1   MESSWVNTSLDLNINPFKHVNESTQKIKKFEGYSTRVLEQKLQVKNEDGVGVLVEELTRM 60

Query: 57  STENKKLNEMLSILCKNYNNLRQQYMDLMNKNTENEVGI---SKKRKAESEDHCHTIGFN 113
           S+ENKKL EML ++C NY  L++   DL++KN+  E+     S+KRKAESED+   I   
Sbjct: 61  SSENKKLTEMLGVVCDNYMALQKHLADLVSKNSVKEISTPISSRKRKAESEDYSIVINGI 120

Query: 114 VHATESSTSTDEESCKRPKDNNTKAKVSRFYVRASDSNSTLIVKDGYQWRKYGQKVTRDN 173
                 S+S DEES KRPK+N  K+K+SR Y R S+S+++L+VKDGYQWRKYGQKVTRDN
Sbjct: 121 SGGNAESSSIDEESSKRPKEN-LKSKISRTYFRTSESDASLVVKDGYQWRKYGQKVTRDN 179

Query: 174 PSPRAYFKCSFAPSCPVKKKVQRSAEDPSILVATYEGEHNHPQPTDSKAELSLSPSHVAT 233
           PSPRAY+KCSFAPSCPVKKKVQRSAEDPSILVATYEGEHNH   + S+ E SL  SH + 
Sbjct: 180 PSPRAYYKCSFAPSCPVKKKVQRSAEDPSILVATYEGEHNH--ASHSQHEPSLGSSHGSN 237

Query: 234 IGNPIHVSAASSMLSASPTATLDMIQPGFLFDDAKKSSVQQIEAPAIHQILVQQMASNLT 293
            G PI     S + S++PT TLD+IQ G   D A K +VQ++E PA+ +ILVQQMAS+LT
Sbjct: 238 FG-PI--PTQSPIRSSAPTVTLDLIQSGRHGDTATK-TVQEMEVPALQKILVQQMASSLT 293

Query: 294 KDPNFTAALAAAISGRFADQARTQRW 319
           +DPNFTAALAAAISGRF +Q R ++W
Sbjct: 294 RDPNFTAALAAAISGRF-NQTRMEKW 318

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|346456324|gb|AEO31524.1| WRKY transcription factor 2-7 [Dimocarpus longan]

 Score =  338 bits (866), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 194/297 (65%), Positives = 234/297 (78%), Gaps = 21/297 (7%)

Query: 23  VPKREFKGDHFAEFEERASVKQETGILVEELNRISTENKKLNEMLSILCKNYNNLRQQYM 82
           V KREF+G+    ++E+ SVK ETG+LVEELNR+S+ENKKL EML+++C+NYNNL+++YM
Sbjct: 29  VHKREFEGN----YDEKVSVKHETGVLVEELNRVSSENKKLTEMLAVICENYNNLQKEYM 84

Query: 83  DLMNKNTENEVGISKKRKAESEDHCHT-IGFNVHATESSTSTDEESCKRPKDNNT--KAK 139
           DL +KN ENEV   +KRK +SED+ +  IGFN   TE S+S DEESCK+PK+NN   + K
Sbjct: 85  DLKSKNQENEV---RKRKPDSEDYNNNMIGFNGQ-TECSSS-DEESCKKPKENNNNIRPK 139

Query: 140 VSRFYVRASDS-NSTLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSA 198
           VSR Y+R S S NS L VKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSA
Sbjct: 140 VSRVYLRTSGSSNSGLTVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSA 199

Query: 199 EDPSILVATYEGEHNHPQPTDSKAELSLSPSHVATIGNPIHVSAASSMLSASPTA-TLDM 257
           EDPS+LVATYEGEHNHPQP  SK ELS+SP    +    + VS+ SSM S+ P+A T DM
Sbjct: 200 EDPSVLVATYEGEHNHPQP--SKHELSMSPRSSLSS---VPVSSTSSMKSSGPSAVTFDM 254

Query: 258 IQP-GFLFDDAKKSSVQQI-EAPAIHQILVQQMASNLTKDPNFTAALAAAISGRFAD 312
            +P GF+     +  +Q+I +APAI QILVQQMA++LT DPNFT ALAAAISGRF D
Sbjct: 255 TKPAGFVDHHELRKPIQEIDQAPAIQQILVQQMANSLTSDPNFTTALAAAISGRFVD 311

Source: Dimocarpus longan

Species: Dimocarpus longan

Genus: Dimocarpus

Family: Sapindaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|259121383|gb|ACV92011.1| WRKY transcription factor 9 [(Populus tomentosa x P. bolleana) x P. tomentosa]

 Score =  322 bits (826), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 178/327 (54%), Positives = 240/327 (73%), Gaps = 17/327 (5%)

Query: 1   MDSTWVDTSLDLNLNLLNHSSEVPK---REFKGDHFAEFEERASVKQETGI--LVEELNR 55
           MDS+WV+TSLDLN+N   H +E      +EF+G +    E++  VK+E G+  LVEELNR
Sbjct: 1   MDSSWVNTSLDLNINPFKHVNETQAQEIKEFEG-YSTRVEQKVQVKKEAGVSALVEELNR 59

Query: 56  ISTENKKLNEMLSILCKNYNNLRQQYMDLMNKNTENEV----GISKKRKAESEDHCHTIG 111
           +++EN+KL E+L ++C+ Y  L++   DL +KN+E E+     IS KRKAESED+ + I 
Sbjct: 60  VNSENQKLTEVLGVVCEKYLTLQKHLADLTSKNSEKELITTPVISMKRKAESEDYSNVIN 119

Query: 112 FNVHATESSTSTDEESCKRPKDNNTKAKVSRFYVRASDSNSTLIVKDGYQWRKYGQKVTR 171
                   S+S+DE+S KRP++N  K K+SR Y R + S+++L+V+DGYQWRKYGQKVTR
Sbjct: 120 TINGGNTESSSSDEDSSKRPQEN-LKTKISRAYFRTNASDTSLVVRDGYQWRKYGQKVTR 178

Query: 172 DNPSPRAYFKCSFAPSCPVKKKVQRSAEDPSILVATYEGEHNHPQPTDSKAELSLSPSHV 231
           DNPSPRAYFKCSFAPSCPVKKKVQ+SAE+PSILVATYEGEHNH   + S+ +LSL  S  
Sbjct: 179 DNPSPRAYFKCSFAPSCPVKKKVQKSAENPSILVATYEGEHNH--ASQSQPDLSLGSSQS 236

Query: 232 ATIGNPIHVSAASSMLSASPTATLDMIQPGFLFDDAKKSSVQQIEAPAIHQILVQQMASN 291
           ++ G    V + SS+ ++ PT TLD+IQ G   D AKK+  + ++AP + ++LVQQMAS+
Sbjct: 237 SSFG---PVPSPSSIRTSVPTVTLDLIQSGMHVDSAKKTVQENLQAPEVQKVLVQQMASS 293

Query: 292 LTKDPNFTAALAAAISGRFADQARTQR 318
           LT+DPNFTAALAAAISGRF +Q R ++
Sbjct: 294 LTRDPNFTAALAAAISGRF-NQTRIEK 319

Source: (Populus tomentosa x P. bolleana) x P. tomentosa

Species: (Populus tomentosa x P. bolleana) x P. tomentosa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|315272006|gb|ADU02584.1| WRKY transcription factor 3 [Vitis vinifera]

 Score =  317 bits (813), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 178/325 (54%), Positives = 229/325 (70%), Gaps = 14/325 (4%)

Query: 1   MDSTWVDTSLDLNL------NLLNHSSEVPKREFKGDHFAEFEERASVKQETGILVEELN 54
           M+  ++DTSL L+L      N L   S  PKR    D   E +    +K++TG LVEEL 
Sbjct: 1   MEFEFIDTSLGLDLKPNPPANSLGDFS--PKRGDCVDVDVERKPSPVLKEDTGGLVEELR 58

Query: 55  RISTENKKLNEMLSILCKNYNNLRQQYMDLMNKNTENEVGISKKRKAESEDHCHTIGFNV 114
           R+STENKKL EMLSI+C+NYN L     +LM KN+++++  S+KRKAESED+ + I  + 
Sbjct: 59  RMSTENKKLTEMLSIMCENYNALHNHLKELMRKNSDHQLFNSRKRKAESEDNINNIHGSS 118

Query: 115 HATESSTSTDEESCKRPKDNNTKAKVSRFYVRASDSNSTLIVKDGYQWRKYGQKVTRDNP 174
                S S+DE+S K+P+++ TK KVSR  V+   S+++L++KDGYQWRKYGQKVTRDNP
Sbjct: 119 GNNTESISSDEDSSKKPRES-TKGKVSRVVVKTEKSDNSLLLKDGYQWRKYGQKVTRDNP 177

Query: 175 SPRAYFKCSFAPSCPVKKKVQRSAEDPSILVATYEGEHNHPQPTDSKAELSLSPSHVATI 234
           SPRAYFKCSFAP+CPVKKKVQRSAED S+L+ATYEGEHNH QP  S  E+SL  +  AT 
Sbjct: 178 SPRAYFKCSFAPTCPVKKKVQRSAEDQSLLIATYEGEHNHQQP--SPVEVSLGFNRAAT- 234

Query: 235 GNPIHVSAASSMLSASPTATLDMIQPGFLFDDAKKSSVQQIEAPAIHQILVQQMASNLTK 294
             P  V + +SM+S  PT TLD+IQPG   + AK S     E P + Q LV+QMAS+LT+
Sbjct: 235 --PASVLSPASMVSPRPTVTLDLIQPGLANNTAKNSVHDVKEKPVVQQFLVEQMASSLTR 292

Query: 295 DPNFTAALAAAISGRFADQARTQRW 319
           DP+FTAALAAAISGR  DQ + ++W
Sbjct: 293 DPSFTAALAAAISGRILDQTQIEKW 317

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224089360|ref|XP_002308704.1| predicted protein [Populus trichocarpa] gi|222854680|gb|EEE92227.1| predicted protein [Populus trichocarpa]

 Score =  317 bits (812), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 177/327 (54%), Positives = 238/327 (72%), Gaps = 17/327 (5%)

Query: 1   MDSTWVDTSLDLNLNLLNHSSEV---PKREFKGDHFAEFEERASVKQETGI--LVEELNR 55
           MDS+WV+TSLDLN+N   H +E      +EF+G +    E++  VK+E G+  LVEELNR
Sbjct: 1   MDSSWVNTSLDLNINPFKHVNETQAQESKEFEG-YSTRVEQKLQVKKEAGVSALVEELNR 59

Query: 56  ISTENKKLNEMLSILCKNYNNLRQQYMDLMNKNTENEVG----ISKKRKAESEDHCHTIG 111
           +++EN+KL E+L ++C+ Y  L++   DL +KN+E E+     IS KRKAESED+ + I 
Sbjct: 60  VNSENQKLTEVLGVVCEKYLTLQKHLADLTSKNSEKELMTTPVISMKRKAESEDYSNLIN 119

Query: 112 FNVHATESSTSTDEESCKRPKDNNTKAKVSRFYVRASDSNSTLIVKDGYQWRKYGQKVTR 171
                   S+S+DE+S KRP++N  K K+SR Y   + S+++L+V+DGYQWRKYGQKVTR
Sbjct: 120 AINGGNTESSSSDEDSSKRPQEN-LKTKISRAYFPTNASDTSLVVRDGYQWRKYGQKVTR 178

Query: 172 DNPSPRAYFKCSFAPSCPVKKKVQRSAEDPSILVATYEGEHNHPQPTDSKAELSLSPSHV 231
           DNPSPRAYFKCSFAPSCPVKKKVQ+SAE+PSILVATYEGEHNH   + S+ ELSL  S  
Sbjct: 179 DNPSPRAYFKCSFAPSCPVKKKVQKSAENPSILVATYEGEHNH--ASHSQPELSLGSSQS 236

Query: 232 ATIGNPIHVSAASSMLSASPTATLDMIQPGFLFDDAKKSSVQQIEAPAIHQILVQQMASN 291
           ++ G    V + SS+ ++ PT TLD+IQ G   D AKK+  + ++ P + ++LVQQMAS+
Sbjct: 237 SSFG---PVPSPSSIRTSVPTVTLDLIQSGMHVDSAKKTVQENLQVPEVQKVLVQQMASS 293

Query: 292 LTKDPNFTAALAAAISGRFADQARTQR 318
           LT+DPNFTAALAAAISGRF +Q R ++
Sbjct: 294 LTRDPNFTAALAAAISGRF-NQTRIEK 319

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|345104746|gb|AEN71143.1| WRKY3 transcription factor [Vitis pseudoreticulata]

 Score =  317 bits (811), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 179/327 (54%), Positives = 230/327 (70%), Gaps = 16/327 (4%)

Query: 1   MDSTWVDTSLDLNL------NLLNHSSEVPKREFKGDHFAEFEERAS--VKQETGILVEE 52
           M+  ++DTSL L+L      N L   S  PKR    D   + E + S  +K++TG LVEE
Sbjct: 1   MEFEFIDTSLGLDLKPNPPANSLGDFS--PKRGDCVDVDVDMERKPSPVLKEDTGGLVEE 58

Query: 53  LNRISTENKKLNEMLSILCKNYNNLRQQYMDLMNKNTENEVGISKKRKAESEDHCHTIGF 112
           L R+STENKKL EMLSI+C+NYN L     +LM KN+++++  S+KRKAESED+ + I  
Sbjct: 59  LRRMSTENKKLTEMLSIMCENYNALHNHLKELMRKNSDHQLFNSRKRKAESEDNINNIHG 118

Query: 113 NVHATESSTSTDEESCKRPKDNNTKAKVSRFYVRASDSNSTLIVKDGYQWRKYGQKVTRD 172
           +      S S+DE+S K+P+++ TK KVSR  V+   S+++L++KDGYQWRKYGQKVTRD
Sbjct: 119 SSGNNTESISSDEDSSKKPRES-TKGKVSRVVVKTEKSDNSLLLKDGYQWRKYGQKVTRD 177

Query: 173 NPSPRAYFKCSFAPSCPVKKKVQRSAEDPSILVATYEGEHNHPQPTDSKAELSLSPSHVA 232
           NPSPRAYFKCSFAP+CPVKKKVQRSAED S+L+ATYEGEHNH QP  S  E+SL  +  A
Sbjct: 178 NPSPRAYFKCSFAPTCPVKKKVQRSAEDQSLLIATYEGEHNHQQP--SPVEVSLGFNRAA 235

Query: 233 TIGNPIHVSAASSMLSASPTATLDMIQPGFLFDDAKKSSVQQIEAPAIHQILVQQMASNL 292
           T   P  V + +SM S  PT TLD+IQPG   + AK S     E P + Q LV+QMAS+L
Sbjct: 236 T---PASVLSPASMASPRPTVTLDLIQPGLANNTAKNSVHDVKEKPVVQQFLVEQMASSL 292

Query: 293 TKDPNFTAALAAAISGRFADQARTQRW 319
           T+DP+FTAALAAAISGR  DQ + ++W
Sbjct: 293 TRDPSFTAALAAAISGRILDQTQIEKW 319

Source: Vitis pseudoreticulata

Species: Vitis pseudoreticulata

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224115864|ref|XP_002332076.1| predicted protein [Populus trichocarpa] gi|222831962|gb|EEE70439.1| predicted protein [Populus trichocarpa]

 Score =  316 bits (810), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 177/328 (53%), Positives = 220/328 (67%), Gaps = 22/328 (6%)

Query: 2   DSTWVDTSLDLNLNLLNHSSEVP--------KREFKGDHFAEFEERASVKQETGILVEEL 53
           +S+WVDTSLDLN+N L   S+ P         R+ K      F+ + S K+ETG + EEL
Sbjct: 3   NSSWVDTSLDLNINPLRVKSDAPVDAESFGVPRKMKPTFM--FQTKPSAKEETGAIEEEL 60

Query: 54  NRISTENKKLNEMLSILCKNYNNLRQQYMDLMNKNTENEV-GISKKRKAESEDHCHTIGF 112
           NR+S EN+KL EML+++C+NYN LR Q MD M KN E E+ G SKKRK+ S ++ +    
Sbjct: 61  NRVSEENRKLTEMLTVMCENYNALRNQLMDCMCKNGEKELHGPSKKRKSASNNN-NDNNI 119

Query: 113 NVHATESSTSTDEESCKRPKDNNTKAKVSRFYVRASDSNSTLIVKDGYQWRKYGQKVTRD 172
            ++    S+STDEE  K+P++   KAK SR YV+    + +LIVKDGYQWRKYGQKVTRD
Sbjct: 120 AMNGNSESSSTDEELSKKPREEVIKAKTSRAYVKTEAGDKSLIVKDGYQWRKYGQKVTRD 179

Query: 173 NPSPRAYFKCSFAPSCPVKKKVQRSAEDPSILVATYEGEHNHPQPTDSKAELSLSPSHVA 232
           NPSPRAYFKCSFAPSCPVKKKVQRS +D S+LVATYEGEHNHP P+    E +   SH  
Sbjct: 180 NPSPRAYFKCSFAPSCPVKKKVQRSIDDQSVLVATYEGEHNHPHPS---MEATSGSSHGL 236

Query: 233 TIGN-PIHVSAASSMLSASPTATLDMIQPGFLFDDAKKSSVQQIEAPAIHQILVQQMASN 291
           T+G+ P   S AS   S     TLD+ +     D   KSS  + +AP + Q LV+QMAS+
Sbjct: 237 TLGSVPCSASLAS---SGKTNITLDLTKSKSSND--AKSSKPKTDAPEVRQFLVEQMASS 291

Query: 292 LTKDPNFTAALAAAISGRFADQARTQRW 319
           LTKDPNFTAALAAAISGR   Q  T +W
Sbjct: 292 LTKDPNFTAALAAAISGRMLQQNHT-KW 318

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225430340|ref|XP_002285255.1| PREDICTED: probable WRKY transcription factor 40-like [Vitis vinifera]

 Score =  315 bits (808), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 177/325 (54%), Positives = 229/325 (70%), Gaps = 14/325 (4%)

Query: 1   MDSTWVDTSLDLNL------NLLNHSSEVPKREFKGDHFAEFEERASVKQETGILVEELN 54
           M+  ++DTSL L+L      N L   S  PKR    D   E +    +K++TG LVEEL 
Sbjct: 1   MEFEFIDTSLGLDLKPNPPANSLGDFS--PKRGDCVDVDVERKPSPVLKEDTGGLVEELR 58

Query: 55  RISTENKKLNEMLSILCKNYNNLRQQYMDLMNKNTENEVGISKKRKAESEDHCHTIGFNV 114
           R+STENKKL E+LSI+C+NYN L     +LM KN+++++  S+KRKAESED+ + I  + 
Sbjct: 59  RMSTENKKLTELLSIMCENYNALHNHLKELMRKNSDHQLFNSRKRKAESEDNINNIHGSS 118

Query: 115 HATESSTSTDEESCKRPKDNNTKAKVSRFYVRASDSNSTLIVKDGYQWRKYGQKVTRDNP 174
                S S+DE+S K+P+++ TK KVSR  V+   S+++L++KDGYQWRKYGQKVTRDNP
Sbjct: 119 GNNTESISSDEDSSKKPRES-TKGKVSRVVVKTEKSDNSLLLKDGYQWRKYGQKVTRDNP 177

Query: 175 SPRAYFKCSFAPSCPVKKKVQRSAEDPSILVATYEGEHNHPQPTDSKAELSLSPSHVATI 234
           SPRAYFKCSFAP+CPVKKKVQRSAED S+L+ATYEGEHNH QP  S  E+SL  +  AT 
Sbjct: 178 SPRAYFKCSFAPTCPVKKKVQRSAEDQSLLIATYEGEHNHQQP--SPVEVSLGFNRAAT- 234

Query: 235 GNPIHVSAASSMLSASPTATLDMIQPGFLFDDAKKSSVQQIEAPAIHQILVQQMASNLTK 294
             P  V + +SM+S  PT TLD+IQPG   + AK S     E P + Q LV+QMAS+LT+
Sbjct: 235 --PASVLSPASMVSPRPTVTLDLIQPGLANNTAKNSVHDVKEKPIVQQFLVEQMASSLTR 292

Query: 295 DPNFTAALAAAISGRFADQARTQRW 319
           DP+FTAALAAAISGR  DQ + ++W
Sbjct: 293 DPSFTAALAAAISGRILDQTQIEKW 317

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147774185|emb|CAN65715.1| hypothetical protein VITISV_022504 [Vitis vinifera]

 Score =  314 bits (804), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 177/325 (54%), Positives = 228/325 (70%), Gaps = 14/325 (4%)

Query: 1   MDSTWVDTSLDLNL------NLLNHSSEVPKREFKGDHFAEFEERASVKQETGILVEELN 54
           M+  ++DTSL L+L      N L   S  PKR    D   E +    +K++TG LVEEL 
Sbjct: 1   MEFEFIDTSLGLDLKPNPPANSLGDFS--PKRGDCVDVDVERKPSPVLKEDTGGLVEELR 58

Query: 55  RISTENKKLNEMLSILCKNYNNLRQQYMDLMNKNTENEVGISKKRKAESEDHCHTIGFNV 114
           R+STENKKL EMLSI+C+NYN L     +LM KN+++++  S+KRKAESED+ + I  + 
Sbjct: 59  RMSTENKKLTEMLSIMCENYNALHNHLKELMRKNSDHQLFNSRKRKAESEDNINNIHGSS 118

Query: 115 HATESSTSTDEESCKRPKDNNTKAKVSRFYVRASDSNSTLIVKDGYQWRKYGQKVTRDNP 174
                S S+DE+S K+P+++ TK KVSR  V+   S+++L++KDGYQWRKYGQKVTRDN 
Sbjct: 119 GNNTESISSDEDSSKKPRES-TKGKVSRVVVKTEKSDNSLLLKDGYQWRKYGQKVTRDNX 177

Query: 175 SPRAYFKCSFAPSCPVKKKVQRSAEDPSILVATYEGEHNHPQPTDSKAELSLSPSHVATI 234
           SPRAYFKCSFAP+CPVKKKVQRSAED S+L+ATYEGEHNH QP  S  E+SL  +  AT 
Sbjct: 178 SPRAYFKCSFAPTCPVKKKVQRSAEDQSLLIATYEGEHNHQQP--SPVEVSLGFNRAAT- 234

Query: 235 GNPIHVSAASSMLSASPTATLDMIQPGFLFDDAKKSSVQQIEAPAIHQILVQQMASNLTK 294
             P  V + +SM+S  PT TLD+IQPG   + AK S     E P + Q LV+QMAS+LT+
Sbjct: 235 --PASVLSPASMVSPRPTVTLDLIQPGLANNTAKNSVHDVKEKPVVQQFLVEQMASSLTR 292

Query: 295 DPNFTAALAAAISGRFADQARTQRW 319
           DP+FTAALAAAISGR  DQ + ++W
Sbjct: 293 DPSFTAALAAAISGRILDQTQIEKW 317

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	321
TAIR|locus:2025687	302	WRKY40 "WRKY DNA-binding prote	0.838	0.890	0.505	1.5e-65
TAIR|locus:2047395	271	WRKY60 "WRKY DNA-binding prote	0.570	0.675	0.473	7.8e-54
UNIPROTKB|Q6IEL0	348	WRKY71 "Transcription factor W	0.560	0.517	0.492	2.6e-49
TAIR|locus:2124874	310	WRKY18 "WRKY DNA-binding prote	0.563	0.583	0.449	2.3e-48
TAIR|locus:2120623	538	WRKY31 "WRKY DNA-binding prote	0.370	0.221	0.444	9.8e-33
TAIR|locus:2034964	480	WRKY61 "WRKY DNA-binding prote	0.327	0.218	0.473	1.3e-30
TAIR|locus:2150876	548	WRKY72 "WRKY DNA-binding prote	0.479	0.281	0.384	1.1e-27
TAIR|locus:2137179	528	WRKY42 [Arabidopsis thaliana (	0.370	0.225	0.433	1.4e-27
TAIR|locus:2018052	553	WRKY6 [Arabidopsis thaliana (t	0.370	0.215	0.451	2.7e-27
TAIR|locus:2133432	489	WRKY47 [Arabidopsis thaliana (	0.348	0.229	0.483	8e-27

TAIR|locus:2025687 WRKY40 "WRKY DNA-binding protein 40" [Arabidopsis thaliana (taxid:3702)]

 Score = 667 (239.9 bits), Expect = 1.5e-65, P = 1.5e-65
 Identities = 148/293 (50%), Positives = 196/293 (66%)

Query:    39 RASVKQE--TGILVEELNRISTENKKLNEMLSILCKNYNNLRQQYMDLMNKN--TE-NEV 93
             R  V+++  T  LVEELNR+S ENKKL+EML+++C NYN LR+Q M+ +NK+  TE +++
Sbjct:    21 RMRVEEDPPTSALVEELNRVSAENKKLSEMLTLMCDNYNVLRKQLMEYVNKSNITERDQI 80

Query:    94 GISKKRKAES-ED--HCHTIGFNVHAXXXXXXXXXXXCKRPKDNNT-KAKVSRFYVRASD 149
                KKRK+ + ED   C  IG  V +           CK+ ++    K KVSR Y +   
Sbjct:    81 SPPKKRKSPAREDAFSCAVIG-GV-SESSSTDQDEYLCKKQREETVVKEKVSRVYYKTEA 138

Query:   150 SNSTLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSAEDPSILVATYE 209
             S++TL+VKDGYQWRKYGQKVTRDNPSPRAYFKC+ APSC VKKKVQRS ED S+LVATYE
Sbjct:   139 SDTTLVVKDGYQWRKYGQKVTRDNPSPRAYFKCACAPSCSVKKKVQRSVEDQSVLVATYE 198

Query:   210 GEHNHPQPT--DSKAELSLSPSHVATIGNPIHVSAASSMLSASPTATLDMIQPGFLFDDA 267
             GEHNHP P+  DS   L+   SH  +   P+  +  SS+    P  T+DMI+       +
Sbjct:   199 GEHNHPMPSQIDSNNGLNRHISHGGSASTPVAANRRSSL--TVPVTTVDMIE-------S 249

Query:   268 KK--SSVQQIEAPAIHQILVQQMASNLTKDPNFTAALAAAISGRFADQARTQR 318
             KK  S   +I+ P + ++LV+QMAS+LTKDPNFTAALAAA++G+   Q  T++
Sbjct:   250 KKVTSPTSRIDFPQVQKLLVEQMASSLTKDPNFTAALAAAVTGKLYQQNHTEK 302

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IDA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0031347 "regulation of defense response" evidence=RCA;IMP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0042742 "defense response to bacterium" evidence=IEP;RCA

GO:0050832 "defense response to fungus" evidence=IEP;RCA

GO:0050691 "regulation of defense response to virus by host" evidence=IGI

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0005515 "protein binding" evidence=IPI

GO:0002237 "response to molecule of bacterial origin" evidence=IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009612 "response to mechanical stimulus" evidence=RCA

GO:0009620 "response to fungus" evidence=RCA

GO:0009646 "response to absence of light" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0016045 "detection of bacterium" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0050776 "regulation of immune response" evidence=RCA

TAIR|locus:2047395 WRKY60 "WRKY DNA-binding protein 60" [Arabidopsis thaliana (taxid:3702)]

 Score = 426 (155.0 bits), Expect = 7.8e-54, Sum P(2) = 7.8e-54
 Identities = 98/207 (47%), Positives = 129/207 (62%)

Query:    20 SSEVPKREFKGDHFAEFEERASVKQET-GILVEELNRISTENKKLNEMLSILCKNY---N 75
             S ++PKRE         E++  VK E   +L +E+NR+++ENKKL EML+ +C+ Y   N
Sbjct:    15 SGKLPKREVSASASKVVEKKWLVKDEKRNMLQDEINRVNSENKKLTEMLARVCEKYYALN 74

Query:    76 NLRQQYMDLMNKNTEN--EVGISKKRKAESEDHCHT-IGFNVHAXXXXXXXXXXXCKRPK 132
             NL ++     +  + N     ++ KRK E ++   + IG ++                P 
Sbjct:    75 NLMEELQSRKSPESVNFQNKQLTGKRKQELDEFVSSPIGLSLG---------------PI 119

Query:   133 DN--NTKAKVSRFYVRASDSNSTLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPV 190
             +N  N KA VS  Y  A  S+++L VKDGYQWRKYGQK+TRDNPSPRAYF+CSF+PSC V
Sbjct:   120 ENITNDKATVSTAYFAAEKSDTSLTVKDGYQWRKYGQKITRDNPSPRAYFRCSFSPSCLV 179

Query:   191 KKKVQRSAEDPSILVATYEGEHNHPQP 217
             KKKVQRSAEDPS LVATYEG HNH  P
Sbjct:   180 KKKVQRSAEDPSFLVATYEGTHNHTGP 206

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0031347 "regulation of defense response" evidence=RCA;IMP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0042742 "defense response to bacterium" evidence=IEP;RCA

GO:0005515 "protein binding" evidence=IPI

GO:0050832 "defense response to fungus" evidence=IEP;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0016045 "detection of bacterium" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0050776 "regulation of immune response" evidence=RCA

UNIPROTKB|Q6IEL0 WRKY71 "Transcription factor WRKY71" [Oryza sativa Indica Group (taxid:39946)]

 Score = 439 (159.6 bits), Expect = 2.6e-49, Sum P(2) = 2.6e-49
 Identities = 95/193 (49%), Positives = 125/193 (64%)

Query:   128 CKRPKDNNTKAKVSRFYVRASDSNSTLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPS 187
             CKR ++   K K+S+ YV A  S+ +L+VKDGYQWRKYGQKVT+DNP PRAYF+CSFAP+
Sbjct:   165 CKRIREE-CKPKISKLYVHADPSDLSLVVKDGYQWRKYGQKVTKDNPCPRAYFRCSFAPA 223

Query:   188 CPVKKKVQRSAEDPSILVATYEGEHNH---PQPTDSKAELSLSPSHVATIGNPIHVSAAS 244
             CPVKKKVQRSAED +ILVATYEGEHNH   P P  S A+ S      A  G P H  AA+
Sbjct:   224 CPVKKKVQRSAEDNTILVATYEGEHNHGQPPPPLQSAAQNSDGSGKSA--GKPPHAPAAA 281

Query:   245 SMLSASPTATLDMIQPGFLFDDAKKSSVQQIEAPAIHQILVQQMASNLTKDPNFTAALAA 304
                  +P       +P  +  + + ++  ++    I + L +QMA  LT+DP+F AAL  
Sbjct:   282 P---PAPVVPHRQHEPVVVNGEQQAAAASEM----IRRNLAEQMAMTLTRDPSFKAALVT 334

Query:   305 AISGRFADQARTQ 317
             A+SGR  + + T+
Sbjct:   335 ALSGRILELSPTK 347

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0006952 "defense response" evidence=IMP

GO:0009685 "gibberellin metabolic process" evidence=IEP

TAIR|locus:2124874 WRKY18 "WRKY DNA-binding protein 18" [Arabidopsis thaliana (taxid:3702)]

 Score = 391 (142.7 bits), Expect = 2.3e-48, Sum P(2) = 2.3e-48
 Identities = 89/198 (44%), Positives = 114/198 (57%)

Query:    37 EERASVKQETGILVEELNRISTENKKL-NEMLSILCKNYNNLRQQYMDLMNKNTENE--- 92
             EE   V  E   L E L R+     +L N +  +  +    + Q  + +  +  + +   
Sbjct:    51 EELNRVNSENKKLTEMLARVCESYNELHNHLEKLQSRQSPEIEQTDIPIKKRKQDPDEFL 110

Query:    93 ---VGISK---KRKAESEDHCHTIGFNVHAXXXXXXXXXXXCKRP-KDNNTKAKVSRFYV 145
                +G+S    +  + +EDH H      H            CKRP  D+  KAKVS  YV
Sbjct:   111 GFPIGLSSGKTENSSSNEDHHH------HHQQHEQKNQLLSCKRPVTDSFNKAKVSTVYV 164

Query:   146 RASDSNSTLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSAEDPSILV 205
                 S+++L VKDG+QWRKYGQKVTRDNPSPRAYF+CSFAPSCPVKKKVQRSAEDPS+LV
Sbjct:   165 PTETSDTSLTVKDGFQWRKYGQKVTRDNPSPRAYFRCSFAPSCPVKKKVQRSAEDPSLLV 224

Query:   206 ATYEGEHNHPQPTDSKAE 223
             ATYEG HNH  P  S+ +
Sbjct:   225 ATYEGTHNHLGPNASEGD 242

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IMP;IDA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0031347 "regulation of defense response" evidence=IMP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0042742 "defense response to bacterium" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0042802 "identical protein binding" evidence=IPI

GO:0050832 "defense response to fungus" evidence=IEP

GO:0050691 "regulation of defense response to virus by host" evidence=IGI

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=IMP

TAIR|locus:2120623 WRKY31 "WRKY DNA-binding protein 31" [Arabidopsis thaliana (taxid:3702)]

 Score = 260 (96.6 bits), Expect = 9.8e-33, Sum P(3) = 9.8e-33
 Identities = 60/135 (44%), Positives = 81/135 (60%)

Query:   137 KAKVSRFYVRASDSNSTLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQR 196
             KA+VS   VRA   +   ++ DG QWRKYGQK+ + NP PRAY++C+ A  CPV+K+VQR
Sbjct:   282 KARVS---VRAR--SEAAMISDGCQWRKYGQKMAKGNPCPRAYYRCTMAGGCPVRKQVQR 336

Query:   197 SAEDPSILVATYEGEHNHPQP---------TDSKAELSLSPSHVATIG--NPIHVSAASS 245
              AED SIL+ TYEG HNHP P         T + A + LS S  +  G  NP ++ A + 
Sbjct:   337 CAEDRSILITTYEGNHNHPLPPAATAMASTTTAAASMLLSGSMSSQDGLMNPTNLLARAI 396

Query:   246 MLSASPTATLDMIQP 260
             +  +S  AT+    P
Sbjct:   397 LPCSSSMATISASAP 411

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2034964 WRKY61 "WRKY DNA-binding protein 61" [Arabidopsis thaliana (taxid:3702)]

 Score = 260 (96.6 bits), Expect = 1.3e-30, Sum P(3) = 1.3e-30
 Identities = 53/112 (47%), Positives = 73/112 (65%)

Query:   139 KVSRFYVRASDSNSTLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSA 198
             K +R  VR+     T+   DG QWRKYGQK+ + NP PRAY++C+ A SCPV+K+VQR +
Sbjct:   175 KKTRVSVRSRCETPTM--NDGCQWRKYGQKIAKGNPCPRAYYRCTIAASCPVRKQVQRCS 232

Query:   199 EDPSILVATYEGEHNHPQPTDSKAELSLSPSHVATIGNPIHVSAASSMLSAS 250
             ED SIL++TYEG HNHP P  + A  S + +  + +     +S ASS  SA+
Sbjct:   233 EDMSILISTYEGTHNHPLPMSATAMASATSAAASML-----LSGASSSSSAA 279

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0010043 "response to zinc ion" evidence=RCA

TAIR|locus:2150876 WRKY72 "WRKY DNA-binding protein 72" [Arabidopsis thaliana (taxid:3702)]

 Score = 265 (98.3 bits), Expect = 1.1e-27, Sum P(2) = 1.1e-27
 Identities = 68/177 (38%), Positives = 104/177 (58%)

Query:   139 KVSRFYVRASDSNSTLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSA 198
             K +R  VRA     T+   DG QWRKYGQK+ + NP PRAY++C+ AP CPV+K+VQR A
Sbjct:   211 KRARVCVRARCDTPTM--NDGCQWRKYGQKIAKGNPCPRAYYRCTVAPGCPVRKQVQRCA 268

Query:   199 EDPSILVATYEGEHNHPQPTDSKAELSLSPSHVATIGNPIHVSAASSML----SASPTAT 254
             +D SIL+ TYEG H+H  P        LS + +A+       SAA+SML    S+SP A 
Sbjct:   269 DDMSILITTYEGTHSHSLP--------LSATTMAST-----TSAAASMLLSGSSSSPAA- 314

Query:   255 LDMIQPGFLFDDAK-KSSVQQIEAPAIHQILVQQMASNLTKDPNFTAALAAAISGRF 310
              +MI    L+D+++  ++ +   +P +H  L   +  +LT   + +++ ++ +S  F
Sbjct:   315 -EMIGNN-LYDNSRFNNNNKSFYSPTLHSPLHPTVTLDLTAPQHSSSSSSSLLSLNF 369

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0006952 "defense response" evidence=IMP

TAIR|locus:2137179 WRKY42 [Arabidopsis thaliana (taxid:3702)]

 Score = 252 (93.8 bits), Expect = 1.4e-27, Sum P(2) = 1.4e-27
 Identities = 59/136 (43%), Positives = 83/136 (61%)

Query:   137 KAKVSRFYVRASDSNSTLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQR 196
             KA+VS   VRA  S + ++  DG QWRKYGQK+ + NP PRAY++C+ A  CPV+K+VQR
Sbjct:   277 KARVS---VRAR-SEAPML-SDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQR 331

Query:   197 SAEDPSILVATYEGEHNHPQP---------TDSKAELSLSPSHVAT---IGNPIHVSAAS 244
              AED +IL+ TYEG HNHP P         T + A + LS S ++    + NP ++ A +
Sbjct:   332 CAEDRTILITTYEGNHNHPLPPAAMNMASTTTAAASMLLSGSTMSNQDGLMNPTNLLART 391

Query:   245 SMLSASPTATLDMIQP 260
              +  +S  AT+    P
Sbjct:   392 ILPCSSSMATISASAP 407

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP

TAIR|locus:2018052 WRKY6 [Arabidopsis thaliana (taxid:3702)]

 Score = 256 (95.2 bits), Expect = 2.7e-27, Sum P(2) = 2.7e-27
 Identities = 61/135 (45%), Positives = 82/135 (60%)

Query:   137 KAKVSRFYVRASDSNSTLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQR 196
             KA+VS   VRA  S + +I  DG QWRKYGQK+ + NP PRAY++C+ A  CPV+K+VQR
Sbjct:   297 KARVS---VRAR-SEAPMI-SDGCQWRKYGQKMAKGNPCPRAYYRCTMATGCPVRKQVQR 351

Query:   197 SAEDPSILVATYEGEHNHPQP---------TDSKAELSLSPSHVATIG--NPIHVSAASS 245
              AED SIL+ TYEG HNHP P         T + A + LS S  +  G  NP ++ A + 
Sbjct:   352 CAEDRSILITTYEGNHNHPLPPAAVAMASTTTAAANMLLSGSMSSHDGMMNPTNLLARAV 411

Query:   246 MLSASPTATLDMIQP 260
             +  ++  AT+    P
Sbjct:   412 LPCSTSMATISASAP 426

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IMP

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0005515 "protein binding" evidence=IPI

GO:0016036 "cellular response to phosphate starvation" evidence=IMP

GO:0044212 "transcription regulatory region DNA binding" evidence=IDA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP

GO:0080169 "cellular response to boron-containing substance deprivation" evidence=IMP

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0043090 "amino acid import" evidence=RCA

TAIR|locus:2133432 WRKY47 [Arabidopsis thaliana (taxid:3702)]

 Score = 262 (97.3 bits), Expect = 8.0e-27, Sum P(2) = 8.0e-27
 Identities = 57/118 (48%), Positives = 74/118 (62%)

Query:   137 KAKVSRFYVRASDSNSTLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQR 196
             KA+VS   VRA    +T  V DG QWRKYGQK+ + NP PRAY++C+ A  CPV+K+VQR
Sbjct:   224 KARVS---VRARSDATT--VNDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQR 278

Query:   197 SAEDPSILVATYEGEHNHPQPTDSKAELSLSPSHVATIGNPIHVSAASSMLSASPTAT 254
              AED +IL  TYEG HNHP P  + A  + + +  A + +    S     LS SP+AT
Sbjct:   279 CAEDTTILTTTYEGNHNHPLPPSATAMAATTSAAAAMLLSGSSSSNLHQTLS-SPSAT 335

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SAH7	WRK40_ARATH	No assigned EC number	0.4741	0.8847	0.9403	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	321
smart00774	59	smart00774, WRKY, DNA binding domain	3e-35
pfam03106	60	pfam03106, WRKY, WRKY DNA -binding domain	2e-33

>gnl|CDD|214815 smart00774, WRKY, DNA binding domain

 Score =  121 bits (307), Expect = 3e-35
 Identities = 35/59 (59%), Positives = 47/59 (79%)

Query: 156 VKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSAEDPSILVATYEGEHNH 214
           + DGYQWRKYGQKV + +P PR+Y++C++   CP KK+VQRS +DPS++  TYEGEH H
Sbjct: 1   LDDGYQWRKYGQKVIKGSPYPRSYYRCTYTQGCPAKKQVQRSDDDPSVVEVTYEGEHTH 59

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding. Length = 59

>gnl|CDD|145969 pfam03106, WRKY, WRKY DNA -binding domain

 Score =  116 bits (294), Expect = 2e-33
 Identities = 36/61 (59%), Positives = 49/61 (80%), Gaps = 1/61 (1%)

Query: 156 VKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSAEDPSILVATYEGEHNHP 215
           + DGY WRKYGQK  + +P PR+Y++C+  P CPVKK+V+RS++DP I+  TYEGEHNHP
Sbjct: 1   LDDGYNWRKYGQKPVKGSPFPRSYYRCTS-PGCPVKKQVERSSDDPQIVEITYEGEHNHP 59

Query: 216 Q 216
           +
Sbjct: 60  K 60

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	321
smart00774	59	WRKY DNA binding domain. The WRKY domain is a DNA	99.97
PF03106	60	WRKY: WRKY DNA -binding domain; InterPro: IPR00365	99.97
PF04500	62	FLYWCH: FLYWCH zinc finger domain; InterPro: IPR00	93.92
PF03101	91	FAR1: FAR1 DNA-binding domain; InterPro: IPR004330	92.77
PF08650	72	DASH_Dad4: DASH complex subunit Dad4; InterPro: IP	84.21
COG4026	290	Uncharacterized protein containing TOPRIM domain,	83.87

>smart00774 WRKY DNA binding domain

Probab=99.97  E-value=5.4e-32  Score=203.95  Aligned_cols=59  Identities=59%  Similarity=1.258  Sum_probs=57.2

Q ss_pred             ccCCccccccCccccCCCCCCcccccccCCCCCccccceeecCCCCCEEEEEeeccCCC
Q 020831          156 VKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSAEDPSILVATYEGEHNH  214 (321)
Q Consensus       156 ~~DGy~WRKYGQK~ikgnp~PRsYYrCs~~~~C~akKqVqr~~~d~~~~~~TY~G~HnH  214 (321)
                      ++|||+|||||||.|+|+++||+||||++.++|+|+|+|||+++|+.+++|||+|+|||
T Consensus         1 ~~DGy~WRKYGQK~ikgs~~pRsYYrCt~~~~C~a~K~Vq~~~~d~~~~~vtY~g~H~h   59 (59)
T smart00774        1 LDDGYQWRKYGQKVIKGSPFPRSYYRCTYSQGCPAKKQVQRSDDDPSVVEVTYEGEHTH   59 (59)
T ss_pred             CCCcccccccCcEecCCCcCcceEEeccccCCCCCcccEEEECCCCCEEEEEEeeEeCC
Confidence            47999999999999999999999999999789999999999999999999999999998

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding.

>PF03106 WRKY: WRKY DNA -binding domain; InterPro: IPR003657 The WRKY domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger- like motif

Probab=99.97  E-value=3.1e-32  Score=205.34  Aligned_cols=59  Identities=61%  Similarity=1.294  Sum_probs=52.2

Q ss_pred             ccCCccccccCccccCCCCCCcccccccCCCCCccccceeecCCCCCEEEEEeeccCCCC
Q 020831          156 VKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSAEDPSILVATYEGEHNHP  215 (321)
Q Consensus       156 ~~DGy~WRKYGQK~ikgnp~PRsYYrCs~~~~C~akKqVqr~~~d~~~~~~TY~G~HnH~  215 (321)
                      ++|||+|||||||.|+|+++||+||||++. +|+|+|+|||+.+|+.+++|||+|+|||+
T Consensus         1 ~~Dgy~WRKYGqK~i~g~~~pRsYYrCt~~-~C~akK~Vqr~~~d~~~~~vtY~G~H~h~   59 (60)
T PF03106_consen    1 LDDGYRWRKYGQKNIKGSPYPRSYYRCTHP-GCPAKKQVQRSADDPNIVIVTYEGEHNHP   59 (60)
T ss_dssp             --SSS-EEEEEEEEETTTTCEEEEEEEECT-TEEEEEEEEEETTCCCEEEEEEES--SS-
T ss_pred             CCCCCchhhccCcccCCCceeeEeeecccc-ChhheeeEEEecCCCCEEEEEEeeeeCCC
Confidence            479999999999999999999999999996 99999999999999999999999999997

The WRKY domain is found in one or two copies in a superfamily of plant transcription factors involved in the regulation of various physiological programs that are unique to plants, including pathogen defence, senescence, trichome development and the biosynthesis of secondary metabolites. The WRKY domain binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core of the W box is essential for function and WRKY binding []. Some proteins known to contain a WRKY domain include Arabidopsis thaliana ZAP1 (Zinc-dependent Activator Protein-1) and AtWRKY44/TTG2, a protein involved in trichome development and anthocyanin pigmentation; and wild oat ABF1-2, two proteins involved in the gibberelic acid-induced expression of the alpha-Amy2 gene. Structural studies indicate that this domain is a four-stranded beta-sheet with a zinc binding pocket, forming a novel zinc and DNA binding structure []. The WRKYGQK residues correspond to the most N-terminal beta-strand, which enables extensive hydrophobic interactions, contributing to the structural stability of the beta-sheet.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2AYD_A 1WJ2_A 2LEX_A.

>PF04500 FLYWCH: FLYWCH zinc finger domain; InterPro: IPR007588 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=93.92  E-value=0.049  Score=38.95  Aligned_cols=52  Identities=31%  Similarity=0.563  Sum_probs=27.2

Q ss_pred             cccccCCccccccCccccCCCCCCcccccccCC--CCCccccceeecCCCCCEEEEEeeccCCC
Q 020831          153 TLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFA--PSCPVKKKVQRSAEDPSILVATYEGEHNH  214 (321)
Q Consensus       153 ~~~~~DGy~WRKYGQK~ikgnp~PRsYYrCs~~--~~C~akKqVqr~~~d~~~~~~TY~G~HnH  214 (321)
                      ..++-|||.-+++...      ....|+||+..  .+|+|+=.+.  .++. . ++...++|||
T Consensus         9 ~~L~~~Gy~y~~~~~~------~~~~~WrC~~~~~~~C~a~~~~~--~~~~-~-~~~~~~~HnH   62 (62)
T PF04500_consen    9 PKLVYDGYRYYFNKRN------DGKTYWRCSRRRSHGCRARLITD--AGDG-R-VVRTNGEHNH   62 (62)
T ss_dssp             EEEEETTEEEEEEEE-------SS-EEEEEGGGTTS----EEEEE----TT-E-EEE-S---SS
T ss_pred             EEEEECCeEEECcCCC------CCcEEEEeCCCCCCCCeEEEEEE--CCCC-E-EEECCCccCC
Confidence            4567899988776554      34679999974  3799987776  3343 3 3334499998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a potential FLYWCH Zn-finger domain found in a number of eukaryotic proteins. FLYWCH is a C2H2-type zinc finger characterised by five conserved hydrophobic residues, containing the conserved sequence motif: F/Y-X(n)-L-X(n)-F/Y-X(n)-WXCX(6-12)CX(17-22)HXH where X indicates any amino acid. This domain was first characterised in Drosophila Modifier of mdg4 proteins, Mod(mgd4), putative chromatin modulators involved in higher order chromatin domains. Mod(mdg4) proteins share a common N-terminal BTB/POZ domain, but differ in their C-terminal region, most containing C-terminal FLYWCH zinc finger motifs []. The FLYWCH domain in Mod(mdg4) proteins has a putative role in protein-protein interactions; for example, Mod(mdg4)-67.2 interacts with DNA-binding protein Su(Hw) via its FLYWCH domain. FLYWCH domains have been described in other proteins as well, including suppressor of killer of prune, Su(Kpn), which contains 4 terminal FLYWCH zinc finger motifs in a tandem array and a C-terminal glutathione SH-transferase (GST) domain []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2RPR_A.

>PF03101 FAR1: FAR1 DNA-binding domain; InterPro: IPR004330 Phytochrome A is the primary photoreceptor for mediating various far-red light-induced responses in higher plants

Probab=92.77  E-value=0.11  Score=40.44  Aligned_cols=31  Identities=32%  Similarity=0.514  Sum_probs=26.6

Q ss_pred             CCCccccceeecCCCCCEEEEEeeccCCCCCC
Q 020831          186 PSCPVKKKVQRSAEDPSILVATYEGEHNHPQP  217 (321)
Q Consensus       186 ~~C~akKqVqr~~~d~~~~~~TY~G~HnH~~p  217 (321)
                      .+|+|+=.|-+.. |....++.+..+|||+.-
T Consensus        60 tgC~a~i~v~~~~-~~~w~v~~~~~~HNH~L~   90 (91)
T PF03101_consen   60 TGCKARINVKRRK-DGKWRVTSFVLEHNHPLC   90 (91)
T ss_pred             cCCCEEEEEEEcc-CCEEEEEECcCCcCCCCC
Confidence            4999998888876 667899999999999873

It has been found that the proteins governing this response, which include FAR-RED ELONGATED HYPOCOTYL3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1), are a pair of homologous proteins sharing significant sequence homology to mutator-like transposases. These proteins appear to be novel transcription factors, which are essential for activating the expression of FHY1 and FHL (for FHY1-like) and related genes, whose products are required for light-induced phytochrome A nuclear accumulation and subsequent light responses in plants. The FRS (FAR1 Related Sequences) family of proteins share a similar domain structure to mutator-like transposases, including an N-terminal C2H2 zinc finger domain, a central putative core transposase domain, and a C-terminal SWIM motif (named after SWI2/SNF and MuDR transposases). It seems plausible that the FRS family represent transcription factors derived from mutator-like transposases [, ]. This entry represents a domain found in FAR1 and FRS proteins. It contains a WRKY like fold and is therefore most likely a zinc binding DNA-binding domain.

>PF08650 DASH_Dad4: DASH complex subunit Dad4; InterPro: IPR013959 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []

Probab=84.21  E-value=0.85  Score=36.34  Aligned_cols=40  Identities=25%  Similarity=0.428  Sum_probs=33.5

Q ss_pred             hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHH-HHHHHHH
Q 020831           43 KQETGILVEELNRISTENKKLNEMLSILCKNYNN-LRQQYMD   83 (321)
Q Consensus        43 ~e~~~~L~~EL~Rv~eENkrL~~mL~~v~~nY~a-Lq~ql~~   83 (321)
                      .|.+..|-.+|+++...|+.| +++.+||++|.. .+-+|.+
T Consensus        24 NEsv~~lN~~l~eIn~~N~~l-e~~~qm~enY~~nv~fnLe~   64 (72)
T PF08650_consen   24 NESVAELNQELEEINRANKNL-EIVAQMWENYQRNVQFNLEA   64 (72)
T ss_pred             HHHHHHHHHHHHHHHHccccH-HHHHHHHHHHHHHHHHHHHH
Confidence            566788999999999999999 999999999965 5555543

In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=83.87  E-value=2.3  Score=40.98  Aligned_cols=42  Identities=31%  Similarity=0.438  Sum_probs=35.4

Q ss_pred             hHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhh
Q 020831           45 ETGILVEELNRISTENKKLNEMLSILCKNYNNLRQQYMDLMN   86 (321)
Q Consensus        45 ~~~~L~~EL~Rv~eENkrL~~mL~~v~~nY~aLq~ql~~~~~   86 (321)
                      +...++++|.|+.-||-+|.+||..+...|..|+..|-++-.
T Consensus       164 e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~  205 (290)
T COG4026         164 EYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEP  205 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcc
Confidence            345677888888889999999999999999999999888853

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	321
2ayd_A	76	Crystal Structure Of The C-Terminal Wrky Domainof A		1e-17
1wj2_A	78	Solution Structure Of The C-Terminal Wrky Domain Of		2e-17

>pdb|2AYD|A Chain A, Crystal Structure Of The C-Terminal Wrky Domainof Atwrky1, An Sa-Induced And Partially Npr1-Dependent Transcription Factor Length = 76

Iteration: 1
 Score = 87.0 bits (214), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 36/63 (57%), Positives = 49/63 (77%), Gaps = 1/63 (1%)
Query: 155 IVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSAEDPSILVATYEGEHNH 214
           IV DGY+WRKYGQK  + +P PR+Y++CS +P CPVKK V+RS+ D  +L+ TYEG+H+H
Sbjct: 13  IVNDGYRWRKYGQKSVKGSPYPRSYYRCS-SPGCPVKKHVERSSHDTKLLITTYEGKHDH 71
Query: 215 PQP 217
             P
Sbjct: 72  DMP 74

>pdb|1WJ2|A Chain A, Solution Structure Of The C-Terminal Wrky Domain Of Atwrky4 Length = 78

Iteration: 1
 Score = 86.3 bits (212), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 36/63 (57%), Positives = 48/63 (76%), Gaps = 1/63 (1%)
Query: 155 IVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSAEDPSILVATYEGEHNH 214
           ++ DGY+WRKYGQKV + NP PR+Y+KC+  P C V+K V+R+A DP  +V TYEG+HNH
Sbjct: 16  LLDDGYRWRKYGQKVVKGNPYPRSYYKCT-TPGCGVRKHVERAATDPKAVVTTYEGKHNH 74
Query: 215 PQP 217
             P
Sbjct: 75  DLP 77

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	321
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	6e-38
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	4e-37
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana} Length = 76

 Score =  128 bits (324), Expect = 6e-38
 Identities = 39/78 (50%), Positives = 52/78 (66%), Gaps = 3/78 (3%)

Query: 141 SRFYVRASDSNSTLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSAED 200
           SR  V         IV DGY+WRKYGQK  + +P PR+Y++CS +P CPVKK V+RS+ D
Sbjct: 1   SRIVVHTQTLFD--IVNDGYRWRKYGQKSVKGSPYPRSYYRCS-SPGCPVKKHVERSSHD 57

Query: 201 PSILVATYEGEHNHPQPT 218
             +L+ TYEG+H+H  P 
Sbjct: 58  TKLLITTYEGKHDHDMPP 75

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A* Length = 78

 Score =  126 bits (319), Expect = 4e-37
 Identities = 37/80 (46%), Positives = 51/80 (63%), Gaps = 3/80 (3%)

Query: 138 AKVSRFYVRASDSNSTLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRS 197
                  V+ +      ++ DGY+WRKYGQKV + NP PR+Y+KC+  P C V+K V+R+
Sbjct: 1   GSSGSSGVQTTSEVD--LLDDGYRWRKYGQKVVKGNPYPRSYYKCT-TPGCGVRKHVERA 57

Query: 198 AEDPSILVATYEGEHNHPQP 217
           A DP  +V TYEG+HNH  P
Sbjct: 58  ATDPKAVVTTYEGKHNHDLP 77

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.5 bits (112), Expect = 4e-06
 Identities = 51/337 (15%), Positives = 103/337 (30%), Gaps = 91/337 (27%)

Query: 5   WVDTSLDLNLNLLNHSSEVPKREFKGDHFAEFEERASVKQETGILVEELN--RISTENK- 61
           +V+  L +N   L    +  +R+        + E+         +  + N  R+    K 
Sbjct: 82  FVEEVLRINYKFLMSPIKTEQRQ-PSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKL 140

Query: 62  --KLNE-----------ML----SIL----CKNYNNLRQQ-----YMDLMNKNTENEVGI 95
              L E           +L    + +    C +Y    +      +++L N N+   V  
Sbjct: 141 RQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV-- 198

Query: 96  SKKRKAESEDHCHTIGFNVHATESSTSTDEESCKRPKDNNTKAKVSRFYVRASDSNSTLI 155
                   +   + I  N  +    +S  +        ++ +A++ R        N  L+
Sbjct: 199 ----LEMLQKLLYQIDPNWTSRSDHSSNIKLRI-----HSIQAELRRLLKSKPYENCLLV 249

Query: 156 ---VKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKV---QRSAEDPSILVATYE 209
              V++   W                    +F  SC    K+    R  +    L A   
Sbjct: 250 LLNVQNAKAWN-------------------AFNLSC----KILLTTRFKQVTDFLSAATT 286

Query: 210 GEH--NHPQPTDSKAE--------LSLSPS---HVATIGNPIHVSAASSMLSASPTATLD 256
                +H   T +  E        L   P          NP  +S  +  +     AT D
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGL-ATWD 345

Query: 257 MIQPGFLFDDAK----KSSVQQIEAPAIHQILVQQMA 289
             +   +  D      +SS+  +E PA ++ +  +++
Sbjct: 346 NWK--HVNCDKLTTIIESSLNVLE-PAEYRKMFDRLS 379

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.8 bits (105), Expect = 3e-05
 Identities = 38/258 (14%), Positives = 77/258 (29%), Gaps = 63/258 (24%)

Query: 1   MDSTWVDTSLDLNLNLLNHSSEV------PKREFKG--DHFAEFEERASVKQET-GILVE 51
             +TW D    +N + L    E       P  E++   D  + F   A +      ++  
Sbjct: 340 GLATW-DNWKHVNCDKLTTIIESSLNVLEPA-EYRKMFDRLSVFPPSAHIPTILLSLIWF 397

Query: 52  ELNRISTENKKLNEM--LSILCKNYNNLRQQYMDL---MNKNTENEVGISKK-------- 98
           ++ +       +N++   S++ K           +   +    ENE  + +         
Sbjct: 398 DVIKSDVMVV-VNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIP 456

Query: 99  RKAESED----------HCHTIGFNVHATESSTSTDEESCKRPK---DNN-TKAKV---S 141
           +  +S+D          + H IG   H         E          D    + K+   S
Sbjct: 457 KTFDSDDLIPPYLDQYFYSH-IGH--HLKN--IEHPERMTLFRMVFLDFRFLEQKIRHDS 511

Query: 142 RFYVRASDSNSTLIVKDGYQWRKYGQKVTRDNPSPRAYFKC--SFAPSC-------PVKK 192
             +  +    +TL      Q + Y   +  ++P           F P             
Sbjct: 512 TAWNASGSILNTLQ-----QLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTD 566

Query: 193 KVQRS--AEDPSILVATY 208
            ++ +  AED +I    +
Sbjct: 567 LLRIALMAEDEAIFEEAH 584

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	321
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	100.0
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	100.0
2rpr_A	87	Flywch-type zinc finger-containing protein 1; flyw	84.37
2zxx_A	79	Geminin; coiled-coil, cell cycle, coiled coil, DNA	81.48
3m91_A	51	Proteasome-associated ATPase; coil COIL alpha heli	81.35
1t2k_D	61	Cyclic-AMP-dependent transcription factor ATF-2; p	80.56

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}

Probab=100.00  E-value=7e-35  Score=228.29  Aligned_cols=75  Identities=52%  Similarity=1.022  Sum_probs=69.6

Q ss_pred             eeEEEeecCCCCcccccCCccccccCccccCCCCCCcccccccCCCCCccccceeecCCCCCEEEEEeeccCCCCCCC
Q 020831          141 SRFYVRASDSNSTLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSAEDPSILVATYEGEHNHPQPT  218 (321)
Q Consensus       141 ~rv~vr~~~~dt~~~~~DGy~WRKYGQK~ikgnp~PRsYYrCs~~~~C~akKqVqr~~~d~~~~~~TY~G~HnH~~p~  218 (321)
                      +||.|++.+ + ..+++|||+|||||||.|+|+++||+||||++ ++|+|+|+|||+.+|+.+++|||+|+|||+.|.
T Consensus         1 ~r~~v~t~~-~-~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~-~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~   75 (76)
T 2ayd_A            1 SRIVVHTQT-L-FDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSS-PGCPVKKHVERSSHDTKLLITTYEGKHDHDMPP   75 (76)
T ss_dssp             CEEEEEEEC-S-SSCCCCSSCEEEEEEECCTTCSSCEEEEEECS-TTCCCEEEEEECSSSTTEEEEEEESCCSSCCCC
T ss_pred             CeEEEEecC-C-CCcCCCCchhhhCcccccCCCCCceeEeEcCC-CCCCceeeEEEECCCCCEEEEEEccCcCCCCCC
Confidence            478888874 4 46789999999999999999999999999998 699999999999999999999999999999986

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*

Probab=100.00  E-value=3.9e-34  Score=225.02  Aligned_cols=74  Identities=50%  Similarity=1.005  Sum_probs=65.9

Q ss_pred             eEEEeecCCCCcccccCCccccccCccccCCCCCCcccccccCCCCCccccceeecCCCCCEEEEEeeccCCCCCCC
Q 020831          142 RFYVRASDSNSTLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSAEDPSILVATYEGEHNHPQPT  218 (321)
Q Consensus       142 rv~vr~~~~dt~~~~~DGy~WRKYGQK~ikgnp~PRsYYrCs~~~~C~akKqVqr~~~d~~~~~~TY~G~HnH~~p~  218 (321)
                      +|.+++.+ + ..+++|||+|||||||.|+|+++||+||||++ ++|+|+|+|||+.+|+.+++|||+|+|||+.|.
T Consensus         5 ~~~~~t~s-~-~~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~-~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~   78 (78)
T 1wj2_A            5 SSGVQTTS-E-VDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTT-PGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA   78 (78)
T ss_dssp             ---CCCCC-C-CCCCCSSSCBCCCEEECCTTCSSCEEEEEEEC-SSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred             eEEEeccC-C-CCcCCCCchhhhCcccccCCCcCeeEEeecCc-CCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCCC
Confidence            56677764 3 46799999999999999999999999999998 699999999999999999999999999999874

>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}

Probab=84.37  E-value=0.6  Score=35.79  Aligned_cols=60  Identities=18%  Similarity=0.351  Sum_probs=37.0

Q ss_pred             EeecCCCCcccccCCccccccCccccCCCCCCcccccccCC--CCCccccceeecCCCCCEEEEEeeccCCCCCCC
Q 020831          145 VRASDSNSTLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFA--PSCPVKKKVQRSAEDPSILVATYEGEHNHPQPT  218 (321)
Q Consensus       145 vr~~~~dt~~~~~DGy~WRKYGQK~ikgnp~PRsYYrCs~~--~~C~akKqVqr~~~d~~~~~~TY~G~HnH~~p~  218 (321)
                      +++. .+...++-|||...+--+      ...+.|.+|+..  .+|+|+=....  ++     +...+.|||++..
T Consensus        14 v~s~-rG~~~Lv~~Gy~Y~~~~~------~~~~~yWrC~~~~~~kCrARi~T~~--~~-----~~~~~~HnH~p~~   75 (87)
T 2rpr_A           14 LRTS-LGGRFLVHESFLYRKEKA------AGEKVYWMCRDQARLGCRSRAITQG--HR-----IMVMRSHCHQPDL   75 (87)
T ss_dssp             EEET-TTEEEEEETTEEEEEEEE------CSSCEEEEEGGGTTSCCCCEEEEET--TE-----EEECSCCSSCCCH
T ss_pred             EEcC-CCCcEEEECCEEEEeeec------CCCcEEEEecCCCCCCCCEEEEEcC--CC-----EECCCCcCCCCch
Confidence            4443 233567889998775321      123679999963  48999744432  22     2356889997543

>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}

Probab=81.48  E-value=1.9  Score=33.86  Aligned_cols=27  Identities=30%  Similarity=0.313  Sum_probs=23.3

Q ss_pred             hHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 020831           45 ETGILVEELNRISTENKKLNEMLSILC   71 (321)
Q Consensus        45 ~~~~L~~EL~Rv~eENkrL~~mL~~v~   71 (321)
                      ++..+++|+.++++||+.|++|++++-
T Consensus        42 ~ie~~~eEi~~LkeEN~~L~el~~~~~   68 (79)
T 2zxx_A           42 EIEQKDSEIARLRKENKDLAEVAEHVQ   68 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456788999999999999999999864

>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A

Probab=81.35  E-value=5  Score=28.92  Aligned_cols=41  Identities=22%  Similarity=0.229  Sum_probs=35.8

Q ss_pred             hHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Q 020831           45 ETGILVEELNRISTENKKLNEMLSILCKNYNNLRQQYMDLM   85 (321)
Q Consensus        45 ~~~~L~~EL~Rv~eENkrL~~mL~~v~~nY~aLq~ql~~~~   85 (321)
                      .+..|+.+|..+.+-|.||.++|..--..-..|+.+|-.+.
T Consensus        10 r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~La   50 (51)
T 3m91_A           10 DIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG   50 (51)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            34579999999999999999999999998899998887663

>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1

Probab=80.56  E-value=2.9  Score=30.29  Aligned_cols=40  Identities=20%  Similarity=0.242  Sum_probs=34.0

Q ss_pred             hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 020831           43 KQETGILVEELNRISTENKKLNEMLSILCKNYNNLRQQYM   82 (321)
Q Consensus        43 ~e~~~~L~~EL~Rv~eENkrL~~mL~~v~~nY~aLq~ql~   82 (321)
                      .+.+..|+.+...+..+|..|..-+..+......|+.+|+
T Consensus        21 k~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ll   60 (61)
T 1t2k_D           21 KVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLLL   60 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4456789999999999999999999999888888887764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	321
d1wj2a_	71	g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cr	6e-29

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 71

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  104 bits (260), Expect = 6e-29
 Identities = 36/63 (57%), Positives = 48/63 (76%), Gaps = 1/63 (1%)

Query: 155 IVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSAEDPSILVATYEGEHNH 214
           ++ DGY+WRKYGQKV + NP PR+Y+KC+  P C V+K V+R+A DP  +V TYEG+HNH
Sbjct: 9   LLDDGYRWRKYGQKVVKGNPYPRSYYKCT-TPGCGVRKHVERAATDPKAVVTTYEGKHNH 67

Query: 215 PQP 217
             P
Sbjct: 68  DLP 70

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	321
d1wj2a_	71	WRKY DNA-binding protein 4 {Thale cress (Arabidops	100.0

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=1.5e-34  Score=221.95  Aligned_cols=65  Identities=55%  Similarity=1.137  Sum_probs=61.8

Q ss_pred             cccccCCccccccCccccCCCCCCcccccccCCCCCccccceeecCCCCCEEEEEeeccCCCCCCC
Q 020831          153 TLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSAEDPSILVATYEGEHNHPQPT  218 (321)
Q Consensus       153 ~~~~~DGy~WRKYGQK~ikgnp~PRsYYrCs~~~~C~akKqVqr~~~d~~~~~~TY~G~HnH~~p~  218 (321)
                      ..+++|||+|||||||.|+|+++||+||||++ ++|+|+|+|||+++|+.+++|||+|+|||+.|+
T Consensus         7 ~~~~dDGy~WRKYGQK~ikgs~~pRsYYrCt~-~~C~a~K~Vqr~~~d~~~~~vtY~G~H~h~~Ps   71 (71)
T d1wj2a_           7 VDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTT-PGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA   71 (71)
T ss_dssp             CCCCCSSSCBCCCEEECCTTCSSCEEEEEEEC-SSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred             cccCCCCcEecccCceeccCCCCceEEEEccc-cCCCCcceEEEEcCCCCEEEEEEeeEeCCCCCC
Confidence            35789999999999999999999999999998 699999999999999999999999999998874