Citrus Sinensis ID: 020838

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320
Protein Sequence
MAGHFPSFYKGLQVSRCKVWNIIDRTTVVKLERYHLKHHIRGAKDRSIYHQKIKIKHLANAASGHPLQSNQPDDYKPKSPLNSVINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDKLPLLRWKRFAVAAAMCILAVRAVVVQLAFYLHMQTHVYRRPAVFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGATSPFAWSKLITVYFSFTLDHISCCPLNFIPLNDSFFCLYNLRAVYFVLLPHRQ
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccEEEEcccccccccEEccccccccccccccEEEEEcccccccccccccccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEcccccccHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccccccccEEEEEEEEccccccccccEEEEcccccHcccEEccccccEEEcccccEEEEEEccccccccccccccccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcHEEEEHHcccccEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHcccccccccHHcccEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
maghfpsfykglqvsrckvwniidRTTVVKLERYHLKHhirgakdrsiyHQKIKIKHlanaasghplqsnqpddykpksplnSVINALDAFyrfsrphtvigTALSIVSVALLAVEkvsdisplfFTGVLEAIAAALMMNIYIVGlnqlsdieidklplLRWKRFAVAAAMCILAVRAVVVQLAFYLHMQthvyrrpavfskpLIFATAFMSFFSVVIALFkdvpdlegdktfgiRTFTVRLGQKRVFWTCISLLEVAYTVAILVGATSPFAWSKLITVYFSFtldhisccplnfiplndsfFCLYNLRAVYFVLLPHRQ
Flexible Loop (DISEMBL)
maghfpsfykglqvsrckvwnIIDRTTvvkleryhlkhhirgakdrsiyHQKIKIKHLANAASGHPLQSNQPDDYKPKSPLNSVINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDKLPLLRWKRFAVAAAMCILAVRAVVVQLAFYLHMQTHVYRRPAVFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGATSPFAWSKLITVYFSFTLDHISCCPLNFIPLNDSFFCLYNLRAVYFVLLPHRQ
Low Complexity Region (SEG)
MAGHFPSFYKGLQVSRCKVWNIIDRTTVVKLERYHLKHHIRGAKDRSIYHQKIKIKHLANAASGHPLQSNQPDDYKPKSPLNSVINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDKLPLLRWKRFAVAAAMCILAVRAVVVQLAFYLHMQTHVYRRPAVFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGATSPFAWSKLITVYFSFTLDHISCCPLNFIPLNDSFFCLYNLRAVYFVLLPHRQ
Disordered region (IsUnstruct)
****FPSFYKGLQVSRCKVWNIIDRTTVVKLERYHLKHHIRGAKDRSIYHQKIKIKHLA***********************SVINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDKLPLLRWKRFAVAAAMCILAVRAVVVQLAFYLHMQTHVYRRPAVFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGATSPFAWSKLITVYFSFTLDHISCCPLNFIPLNDSFFCLYNLRAVYFVLL****
Disordered Region (DISOPRED)
************************************************************************************INALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDKLPLLRWKRFAVAAAMCILAVRAVVVQLAFYLHMQTHVYRRPAVFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGATSPFAWSKLITVYFSFTLDHISCCPLNFIPLNDSFFCLYNLRAVYFVLLPHRQ
Disordered Region (DISEMBL)
MAGHFPSFYKGLQVSRCKVWNIIDRTTVVKLERYHLKHHIRGAKDRSIYHQKIKIKHLANAASGHPLQSNQPDDYKPKSPLNSVINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDKLPLLRWKRFAVAAAMCILAVRAVVVQLAFYLHMQTHVYRRPAVFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGATSPFAWSKLITVYFSFTLDHISCCPLNFIPLNDSFFCLYNLRAVYFVLLPHRQ
Disordered Region (DISPRO)
****FPSFYKGLQVSRCKVWNIIDRTTVVKLERYHLKHHIRGAKDRSIYHQKIKIKHLANAASG**************SPLNSVINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDKLPLLRWKRFAVAAAMCILAVRAVVVQLAFYLHMQTHVYRRPAVFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGATSPFAWSKLITVYFSFTLDHISCCPLNFIPLNDSFFCLYNLRAVYFVLLPH**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAGHFPSFYKGLQVSRCKVWNIIDRTTVVKLERYHLKHHIRGAKDRSIYHQKIKIKHLANAASGHPLQSNQPDDYKPKSPLNSVINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDKLPLLRWKRFAVAAAMCILAVRAVVVQLAFYLHMQTHVYRRPAVFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGATSPFAWSKLITVYFSFTLDHISCCPLNFIPLNDSFFCLYNLRAVYFVLLPHRQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	320	2.2.26 [Sep-21-2011]
Q8VWJ1	393	Homogentisate phytyltrans	yes	no	0.796	0.648	0.527	8e-83
B7FA90	404	Probable homogentisate ph	yes	no	0.678	0.537	0.576	8e-77
B1B3P3	410	Naringenin 8-dimethylally	N/A	no	0.768	0.6	0.362	9e-43
B9A1Q4	409	Glycinol 4-dimethylallylt	no	no	0.768	0.601	0.343	2e-38
Q1ACB3	386	Homogentisate phytyltrans	no	no	0.65	0.538	0.257	9e-14
Q0D576	379	Probable homogentisate ph	no	no	0.375	0.316	0.335	4e-10

>sp|Q8VWJ1|HPT1_ARATH Homogentisate phytyltransferase 1, chloroplastic OS=Arabidopsis thaliana GN=VTE2-1 PE=2 SV=1

 Score =  307 bits (786), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 173/328 (52%), Positives = 212/328 (64%), Gaps = 73/328 (22%)

Query: 12  LQVSRCKVWNIIDRTTVVKLERYHLKHHIR--GAKDRSIYHQKIKIKHLANAASGHPLQS 69
           ++V RC      D + VV   ++   + +R  G     + + K K +   NA +G     
Sbjct: 32  IRVLRC------DSSKVVAKPKFR-NNLVRPDGQGSSLLLYPKHKSRFRVNATAG----- 79

Query: 70  NQPDDYKPKSPLNSVINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGV 129
            QP+ +   S   S  ++LDAFYRFSRPHTVIGT LSI+SV+ LAVEKVSDISPL FTG+
Sbjct: 80  -QPEAFDSNSKQKSFRDSLDAFYRFSRPHTVIGTVLSILSVSFLAVEKVSDISPLLFTGI 138

Query: 130 LEAIAAALMMNIYIVGLNQLSDIEIDK-----LPL-----------------------LR 161
           LEA+ AALMMNIYIVGLNQLSD+EIDK     LPL                       L 
Sbjct: 139 LEAVVAALMMNIYIVGLNQLSDVEIDKVNKPYLPLASGEYSVNTGIAIVASFSIMSFWLG 198

Query: 162 W------------------------------KRFAVAAAMCILAVRAVVVQLAFYLHMQT 191
           W                              KRFA+ AAMCILAVRA++VQ+AFYLH+QT
Sbjct: 199 WIVGSWPLFWALFVSFMLGTAYSINLPLLRWKRFALVAAMCILAVRAIIVQIAFYLHIQT 258

Query: 192 HVYRRPAVFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTC 251
           HV+ RP +F++PLIFATAFMSFFSVVIALFKD+PD+EGDK FGIR+F+V LGQKRVFWTC
Sbjct: 259 HVFGRPILFTRPLIFATAFMSFFSVVIALFKDIPDIEGDKIFGIRSFSVTLGQKRVFWTC 318

Query: 252 ISLLEVAYTVAILVGATSPFAWSKLITV 279
           ++LL++AY VAILVGATSPF WSK+I+V
Sbjct: 319 VTLLQMAYAVAILVGATSPFIWSKVISV 346

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydrquinone. Tocopherol functions to limit lipid oxidation during seed desiccation, quiescence and germination and early seedling development. Protects thylakoid membrane lipids from photooxidation and is required for low-temperature adaptation.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: nEC: 8

>sp|B7FA90|HPT1_ORYSJ Probable homogentisate phytyltransferase 1, chloroplastic OS=Oryza sativa subsp. japonica GN=HPT1 PE=2 SV=1

 Score =  287 bits (734), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 159/276 (57%), Positives = 188/276 (68%), Gaps = 59/276 (21%)

Query: 62  ASGHPLQSNQPDDYKPKSPLNSVINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDI 121
           ASG PLQS+  + +   S    + ++LDAFYRFSRPHTVIGTALSIVSV+LLAVE +SD+
Sbjct: 83  ASGQPLQSSA-EAHDSSSIWKPISSSLDAFYRFSRPHTVIGTALSIVSVSLLAVENLSDV 141

Query: 122 SPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK-----LPL----------------- 159
           SPLF TG+LEA+ AAL MNIYIVGLNQL DIEIDK     LPL                 
Sbjct: 142 SPLFLTGLLEAVVAALFMNIYIVGLNQLFDIEIDKVNKPTLPLASGEYSPATGVALVSAF 201

Query: 160 ------LRW------------------------------KRFAVAAAMCILAVRAVVVQL 183
                 L W                              KR AV AA+CILAVRAV+VQL
Sbjct: 202 AAMSFGLGWAVGSQPLFLALFISFILGTAYSINLPFLRWKRSAVVAALCILAVRAVIVQL 261

Query: 184 AFYLHMQTHVYRRPAVFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLG 243
           AF+LH+QT V+RRPAVF++PLIFATAFM+FFSVVIALFKD+PD+EGD+ FGI++F+VRLG
Sbjct: 262 AFFLHIQTFVFRRPAVFTRPLIFATAFMTFFSVVIALFKDIPDIEGDRIFGIKSFSVRLG 321

Query: 244 QKRVFWTCISLLEVAYTVAILVGATSPFAWSKLITV 279
           QK+VFW C+ LLE+AY VAIL+GATS   WSK  TV
Sbjct: 322 QKKVFWICVGLLEMAYCVAILMGATSACLWSKYATV 357

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydroquinone.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 8

>sp|B1B3P3|N8DT1_SOPFL Naringenin 8-dimethylallyltransferase 1, chloroplastic OS=Sophora flavescens GN=N8DT-1 PE=1 SV=1

 Score =  174 bits (440), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 112/309 (36%), Positives = 165/309 (53%), Gaps = 63/309 (20%)

Query: 32  ERYHLKHH--IRGAKDRSIYHQKIKIKHLANAASGHPLQSNQPDDYKPKSPLNSVINALD 89
            +++LK H  +      S   ++ + K++ NA S    +  +P    P+S  +SV +ALD
Sbjct: 57  SKHNLKQHYKVNEGGSTSNTSKECEKKYVVNAISEQSFE-YEPQTRDPESIWDSVNDALD 115

Query: 90  AFYRFSRPHTVIGTAL-----SIVSVALLA--------------------------VEKV 118
            FY+F RP+ +    L     S+V+V  L+                          + ++
Sbjct: 116 IFYKFCRPYAMFTIVLGATFKSLVAVEKLSDLSLAFFIGWLQVVVAVICIHIFGVGLNQL 175

Query: 119 SDI--------------SPLFFTGVLEAIAAALMMNI---YIVGLNQL-----------S 150
            DI                L F  V+   A++L++ +   +IV    L           S
Sbjct: 176 CDIEIDKINKPDLPLASGKLSFRNVVIITASSLILGLGFAWIVDSWPLFWTVFISCMVAS 235

Query: 151 DIEIDKLPLLRWKRFAVAAAMCILAVRAVVVQLAFYLHMQTHVYRRPAVFSKPLIFATAF 210
              +D LPLLRWK++ V  A+  +A  AV   L F+LHMQT V++RP  F +PLIF TA 
Sbjct: 236 AYNVD-LPLLRWKKYPVLTAINFIADVAVTRSLGFFLHMQTCVFKRPTTFPRPLIFCTAI 294

Query: 211 MSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGATSP 270
           +S +++VIALFKD+PD+EGD+ FGI++ ++RLG KRVFW C+SLLE+ Y V ILVGATSP
Sbjct: 295 VSIYAIVIALFKDIPDMEGDEKFGIQSLSLRLGPKRVFWICVSLLEMTYGVTILVGATSP 354

Query: 271 FAWSKLITV 279
             WSK+ITV
Sbjct: 355 ILWSKIITV 363

Involved in the biosynthesis of sophoraflavanone G (SFG). Can use flavanones (naringenin, liquiritigenin and hesperetin) as substrates, but not flavonols or isoflavones. Shows a strict specificity for dimethylallyl diphosphate.

Sophora flavescens (taxid: 49840)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 7

EC: 0

>sp|B9A1Q4|G4DT_SOYBN Glycinol 4-dimethylallyltransferase OS=Glycine max GN=G4DT PE=1 SV=1

 Score =  159 bits (403), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 108/314 (34%), Positives = 160/314 (50%), Gaps = 68/314 (21%)

Query: 27  TVVKLERYHLKHHIRGAKDRSIYHQKIKIKHLANAASGHPLQSNQPDDYKPKSPLNSVIN 86
            V++ ++  L HH +  +  S Y Q+   K +  A S  PL   +     PK+ L+SV N
Sbjct: 54  NVLRFQQPSLDHHYKCIRGGSTY-QECNRKFVVKAISKQPL-GFEAHASNPKNILDSVKN 111

Query: 87  ALDAFYRFSRPHTVIGTALSIVSVALLA-------------------------------V 115
            L AFY FS P+T+IG  L   S +LLA                               V
Sbjct: 112 VLSAFYWFSYPYTMIGITLCAFSSSLLAVEKLSDISLSFLIGVLQGVLPQLFIEIYLCGV 171

Query: 116 EKVSDIS---------PL------FFTGVLEAIAAA----------------LMMNIYIV 144
            ++ D+          P+      F TGV+  I+AA                L+ N+ ++
Sbjct: 172 NQLYDLEIDKINKPHLPMASGQFSFKTGVI--ISAAFLALSFGFTWITGSWPLICNLVVI 229

Query: 145 GLNQLSDIEIDKLPLLRWKRFAVAAAMCILAVRAVVVQLAFYLHMQTHVYRRPAVFSKPL 204
             +  +   ID +PLLRWKR+   AAMC+++  A+ + ++++ HMQT V +RP  F + L
Sbjct: 230 A-SSWTAYSID-VPLLRWKRYPFVAAMCMISTWALALPISYFHHMQTVVLKRPIGFPRSL 287

Query: 205 IFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAIL 264
            F  AFM+F+S+ +AL KD+PD+EGDK  GI +F VRLGQKR FW C+S  E+A+ V IL
Sbjct: 288 GFLVAFMTFYSLGLALSKDIPDVEGDKEHGIDSFAVRLGQKRAFWICVSFFEMAFGVGIL 347

Query: 265 VGATSPFAWSKLIT 278
            GA+    W+K+ T
Sbjct: 348 AGASCSHFWTKIFT 361

Proposed to be involved in the biosynthesis of pterocarpan phytoalexins, specifically glyceollins. Can act as a prenyltransferase towards glycinol which is the direct precursor of glyceollins. Seems to be specific for prenylation at C-4 thus producing glyceollin I.

Glycine max (taxid: 3847)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: 6

>sp|Q1ACB3|HPT2_ARATH Homogentisate phytyltransferase 2, chloroplastic OS=Arabidopsis thaliana GN=HPT2 PE=2 SV=1

 Score = 78.2 bits (191), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 72/280 (25%), Positives = 122/280 (43%), Gaps = 72/280 (25%)

Query: 43  AKDRSIYHQKIKIKHLANAASGHPLQSNQPDDYKPKSPLNSVINALDAFYRFSRPHTVIG 102
           +K  S  ++KI I+  +   +    +S+ P        L+ +    +A +RF RPHT+ G
Sbjct: 56  SKFVSTNYRKISIRACSQVGAA---ESDDPV-------LDRIARFQNACWRFLRPHTIRG 105

Query: 103 TALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMM-----------NIYIVGLNQLS- 150
           TAL   S AL+    + +   + ++ VL+A++  L +            IY +G+++++ 
Sbjct: 106 TALG--STALVTRALIENTHLIKWSLVLKALSGLLALICGNGYIVGINQIYDIGIDKVNK 163

Query: 151 --------DIEIDK---------------------------------------LPLLRWK 163
                   D+ +                                         +P LR K
Sbjct: 164 PYLPIAAGDLSVQSAWLLVIFFAIAGLLVVGFNFGPFITSLYSLGLFLGTIYSVPPLRMK 223

Query: 164 RFAVAAAMCILAVRAVVVQLAFYLHMQTHVYRRPAVFSKPLIFATAFMSFFSVVIALFKD 223
           RF VAA + I  VR  ++    Y H        P  +S P+ F T+F++ F++VIA+ KD
Sbjct: 224 RFPVAAFLIIATVRGFLLNFGVY-HATRAALGLPFQWSAPVAFITSFVTLFALVIAITKD 282

Query: 224 VPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAI 263
           +PD+EGD+ F I T   +LG + + +    LL V Y  AI
Sbjct: 283 LPDVEGDRKFQISTLATKLGVRNIAFLGSGLLLVNYVSAI 322

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydrquinone.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 8

>sp|Q0D576|HPT2_ORYSJ Probable homogentisate phytyltransferase 2, chloroplastic OS=Oryza sativa subsp. japonica GN=HPT2 PE=3 SV=2

 Score = 65.9 bits (159), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 44/131 (33%), Positives = 68/131 (51%), Gaps = 11/131 (8%)

Query: 154 IDKLPLLRWKRFAVAAAMCILAVRAVVVQLAFYLHMQTHVYRRPAV-----FSKPLIFAT 208
           I  +P  R KR+ VAA + I  VR       F L+   +   R A+     +S P+ F T
Sbjct: 207 IYSVPPFRLKRYPVAAFLIIATVRG------FLLNFGVYYATRAALGLTFQWSSPVAFIT 260

Query: 209 AFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGAT 268
            F++ F++VIA+ KD+PD+EGD+ + I T   +LG + + +    LL   Y  AI V   
Sbjct: 261 CFVTLFALVIAITKDLPDVEGDRKYQISTLATKLGVRNIAFLGSGLLIANYVAAIAVAFL 320

Query: 269 SPFAWSKLITV 279
            P A+ + + V
Sbjct: 321 MPQAFRRTVMV 331

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydrquinone.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	320
255586143	432	bacteriochlorophyll synthase, putative [	0.859	0.636	0.577	3e-98
219842166	414	homogentisate phytyl transferase [Hevea	0.862	0.666	0.578	3e-97
224143686	398	predicted protein [Populus trichocarpa]	0.840	0.675	0.579	5e-95
254596582	407	homogentisate phytyltransferase [Malus x	0.856	0.673	0.552	1e-94
377657557	394	homogentisate phytyltransferase [Brassic	0.8	0.649	0.541	1e-84
377657555	394	homogentisate phytyltransferase [Brassic	0.803	0.652	0.536	1e-84
359806410	395	homogentisate phytyltransferase 1, chlor	0.753	0.610	0.581	3e-84
374461278	407	aromatic prenyltransferase [Epimedium ac	0.834	0.656	0.527	6e-84
255637849	395	unknown [Glycine max]	0.753	0.610	0.578	2e-83
297836742	393	predicted protein [Arabidopsis lyrata su	0.796	0.648	0.533	2e-82

>gi|255586143|ref|XP_002533733.1| bacteriochlorophyll synthase, putative [Ricinus communis] gi|223526358|gb|EEF28652.1| bacteriochlorophyll synthase, putative [Ricinus communis]

 Score =  364 bits (934), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 197/341 (57%), Positives = 233/341 (68%), Gaps = 66/341 (19%)

Query: 4   HFPSFYKGLQVSRCKVWNIIDRTTVVKLERYHLKHHIRGAKDRSIYHQKIKIKHLANAAS 63
           H PS     +VSRC+ W I++R  VVK + +++KHH+R + +RS  ++K     LA+AAS
Sbjct: 27  HSPSPIAAFEVSRCRAWTILERHNVVKSQHHYVKHHLRHSAERSTIYRKNDASFLAHAAS 86

Query: 64  GHPLQSNQPDDYKPKSPLNSVINALDAFYRFSRPHTVIGT-------ALSIVSVALLAVE 116
             PLQS +P+ Y PK     ++++LDAFYRFSRPHTVIGT       ALSI+SV+LLA++
Sbjct: 87  EQPLQS-EPEAYIPKKTSIPILDSLDAFYRFSRPHTVIGTVKFNISHALSIISVSLLAIQ 145

Query: 117 KVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK-----LPL------------ 159
           K+SD+SPLF TGVLEA+AAALMMNIYIVGLNQL+DIEIDK     LPL            
Sbjct: 146 KLSDLSPLFLTGVLEAVAAALMMNIYIVGLNQLTDIEIDKVNKPYLPLASGEYSVGMGVM 205

Query: 160 -----------LRW------------------------------KRFAVAAAMCILAVRA 178
                      L W                              KRFA  AAMCILAVRA
Sbjct: 206 IVTSFSIMSFWLGWIVGSWPLFWALFISFILGTAYSVNLPLFRWKRFAFVAAMCILAVRA 265

Query: 179 VVVQLAFYLHMQTHVYRRPAVFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTF 238
           V+VQLAFYLHMQ HVYRRPAVFS+PLIFATAFMSFFSVVIALFKD+PD+EGDK FGIR+F
Sbjct: 266 VIVQLAFYLHMQIHVYRRPAVFSRPLIFATAFMSFFSVVIALFKDIPDIEGDKIFGIRSF 325

Query: 239 TVRLGQKRVFWTCISLLEVAYTVAILVGATSPFAWSKLITV 279
           TVRLGQ+RVFW CISLLE+AY VAILVGA S + WSK ITV
Sbjct: 326 TVRLGQERVFWICISLLEIAYGVAILVGAASSYTWSKCITV 366

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|219842166|dbj|BAH10640.1| homogentisate phytyl transferase [Hevea brasiliensis]

 Score =  360 bits (925), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 196/339 (57%), Positives = 228/339 (67%), Gaps = 63/339 (18%)

Query: 3   GHFPSFYKGL---QVSRCKVWNIIDRTTVVKLERYHLKHHIRGAKDRSIYHQKIKIKH-L 58
           GH P   + +   +V+RC+ WN+++R  V K     + HH+R + +RS  +Q+ K  H L
Sbjct: 30  GHSPRVTRSIASVRVARCRTWNVLERYYVAKFPLPRMNHHLRCSVERSNIYQRKKGAHFL 89

Query: 59  ANAASGHPLQSNQPDDYKPKSPLNSVINALDAFYRFSRPHTVIGTALSIVSVALLAVEKV 118
              ASG PL+S + D Y PK   NSV+NALDAFYRFSRPHTVIGTALSI+SV+LLAVEK+
Sbjct: 90  VYTASGQPLES-ESDAYSPKITSNSVLNALDAFYRFSRPHTVIGTALSILSVSLLAVEKL 148

Query: 119 SDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK-----LPL-------------- 159
           SD+SPLF TGVLEA+ AALMMN+YIVGLNQL+DIEID+     LPL              
Sbjct: 149 SDLSPLFLTGVLEAVVAALMMNVYIVGLNQLTDIEIDQVNKPYLPLASGEYSKGIGVLNV 208

Query: 160 ---------LRW------------------------------KRFAVAAAMCILAVRAVV 180
                    L W                              KRFA  AAMCIL VRAV+
Sbjct: 209 ASFSIMSFWLGWVVGSWPLFWALFVSFVLGTAYSINLPLLRWKRFAFVAAMCILVVRAVI 268

Query: 181 VQLAFYLHMQTHVYRRPAVFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTV 240
           VQLAFYLHMQTHVYRRP VFS+PLIFATAFM  FSVVIALFKD+PD+EGDK FGIR+FTV
Sbjct: 269 VQLAFYLHMQTHVYRRPTVFSRPLIFATAFMCLFSVVIALFKDIPDIEGDKIFGIRSFTV 328

Query: 241 RLGQKRVFWTCISLLEVAYTVAILVGATSPFAWSKLITV 279
           RLGQ+RVFWTCISLLE+AY VAILVGA S   WSK ITV
Sbjct: 329 RLGQERVFWTCISLLEIAYGVAILVGAASSHTWSKCITV 367

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224143686|ref|XP_002325040.1| predicted protein [Populus trichocarpa] gi|222866474|gb|EEF03605.1| predicted protein [Populus trichocarpa]

 Score =  353 bits (906), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 194/335 (57%), Positives = 226/335 (67%), Gaps = 66/335 (19%)

Query: 3   GHFPSFYKGLQVSRCKVWNIIDRTTVVKLERYHLKHHIRGAKDRSIYHQKIKIKHLANAA 62
           GH P   + +QV RC+   I++R  VV+ +R+H    ++    +S  +Q+   K L +AA
Sbjct: 31  GHSP---REVQVYRCRARKILERQCVVRFQRHHSGFSVK----KSTIYQENNAKFLVHAA 83

Query: 63  SGHPLQSNQPDDYKPKSPLNSVINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDIS 122
           SG P +S +   Y P+S   SV NALDAFYRFSRPHTVIGTALSI+SV+LLA+EK+SDIS
Sbjct: 84  SGQPFES-ESGAYNPESTSKSVKNALDAFYRFSRPHTVIGTALSILSVSLLAIEKLSDIS 142

Query: 123 PLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK-----LPL------------------ 159
           PLFFTGVLEA+AAALMMNIYIVGLNQL+DIEIDK     LPL                  
Sbjct: 143 PLFFTGVLEAVAAALMMNIYIVGLNQLTDIEIDKVNKPYLPLASGEYSISTGVMIVTSFS 202

Query: 160 -----LRW------------------------------KRFAVAAAMCILAVRAVVVQLA 184
                L W                              KRFA  AA+CILAVRAV+VQLA
Sbjct: 203 IMSFWLGWVVGSWPLFWALFISFVLGTAYSINLPLLRWKRFAFVAAVCILAVRAVIVQLA 262

Query: 185 FYLHMQTHVYRRPAVFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQ 244
           FYLHMQTHVY RP V S+PLIFATAFMSFFSVVIALFKD+PD+EGDK FGIR+FTVRLGQ
Sbjct: 263 FYLHMQTHVYGRPPVLSRPLIFATAFMSFFSVVIALFKDIPDIEGDKIFGIRSFTVRLGQ 322

Query: 245 KRVFWTCISLLEVAYTVAILVGATSPFAWSKLITV 279
            RVFWTCISLLE+AY VAILVGA S + WSK IT+
Sbjct: 323 NRVFWTCISLLEIAYAVAILVGAASSYTWSKYITI 357

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|254596582|gb|ACT75571.1| homogentisate phytyltransferase [Malus x domestica]

 Score =  352 bits (904), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 184/333 (55%), Positives = 228/333 (68%), Gaps = 59/333 (17%)

Query: 5   FPSFYKGLQVSRCKVWNIIDRTTVVKLERYHLKHHIRGAKDRSIYHQKIKIKHLANAASG 64
           F   Y  ++VSRC+ W+I++    V  +++  + +  G K++S +++    K L NA +G
Sbjct: 29  FSGSYVAVRVSRCRAWDILESYCGVGSQQHLFQRNTGGTKEKSKFYRGHDKKFLVNATAG 88

Query: 65  HPLQSNQPDDYKPKSPLNSVINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPL 124
           +PL+S +P+ Y PKS  NS+ NA+DAFYRFSRPHTVIGTALSI+SV+LLAV+ +SD+SPL
Sbjct: 89  NPLES-EPEAYNPKSIWNSIKNAIDAFYRFSRPHTVIGTALSIISVSLLAVKNLSDLSPL 147

Query: 125 FFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK-----LPL-------------------- 159
           FFTGVLEA+ AA  MNIYIVGLNQLSDI+IDK     LPL                    
Sbjct: 148 FFTGVLEAVVAAFFMNIYIVGLNQLSDIDIDKVNKPYLPLASGEYSVGTGIMIVTSFLIM 207

Query: 160 ---------------------------------LRWKRFAVAAAMCILAVRAVVVQLAFY 186
                                            LRWKR AV AAMCILAVRAV+VQLAF+
Sbjct: 208 SFWLGWVVGSWPLFWALFVSFVLGTAYSINLPLLRWKRSAVVAAMCILAVRAVIVQLAFF 267

Query: 187 LHMQTHVYRRPAVFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKR 246
           LHMQ HVY+RPA FS+PLIFATAFMSFFSVVIALFKD+PD++GDK FGIR+FTVR+GQKR
Sbjct: 268 LHMQMHVYKRPAAFSRPLIFATAFMSFFSVVIALFKDIPDIDGDKIFGIRSFTVRMGQKR 327

Query: 247 VFWTCISLLEVAYTVAILVGATSPFAWSKLITV 279
           VFW CISLLE+AY VA+L+GA+S F  SK +TV
Sbjct: 328 VFWICISLLEMAYGVAVLLGASSGFMLSKCVTV 360

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|377657557|gb|AFB74212.1| homogentisate phytyltransferase [Brassica napus]

 Score =  319 bits (817), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 178/329 (54%), Positives = 216/329 (65%), Gaps = 73/329 (22%)

Query: 11  GLQVSRCKVWNIIDRTTVVKLERYHLKHHIRGAKDRSIY--HQKIKIKHLANAASGHPLQ 68
           G +V RC   N++ +       R +L   + G +  S++    + K +  ANA +G    
Sbjct: 32  GNRVLRC---NVVAKPK----SRNNLVSRLDGQESSSLFLLCSRHKSRFQANATTG---- 80

Query: 69  SNQPDDYKPKSPLNSVINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTG 128
             QP+ + PKS  NS  ++LDAFYRFSRPHTVIGT LSI+SV+ LAVEKVSDISPL FTG
Sbjct: 81  --QPEAFDPKSKPNSFRDSLDAFYRFSRPHTVIGTVLSILSVSFLAVEKVSDISPLLFTG 138

Query: 129 VLEAIAAALMMNIYIVGLNQLSDIEIDK-----LPL-----------------------L 160
           +LEA+ AALMMNIYIVGLNQLSD+EIDK     LPL                       L
Sbjct: 139 ILEAVVAALMMNIYIVGLNQLSDVEIDKVNKPYLPLASGEYSVKTGIAIVASFFIMSFWL 198

Query: 161 RW------------------------------KRFAVAAAMCILAVRAVVVQLAFYLHMQ 190
            W                              KRFA+ AAMCILAVRA++VQ+AFYLH+Q
Sbjct: 199 GWIVGSWPLFWALFVSFILGTAYSINLPLLRWKRFALVAAMCILAVRAIIVQIAFYLHIQ 258

Query: 191 THVYRRPAVFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWT 250
           THV+ RP +F++PLIFATAFMSFFSVVIALFKD+PD+EGDK FGIR+F+V LGQKRVFWT
Sbjct: 259 THVFGRPVMFTRPLIFATAFMSFFSVVIALFKDIPDIEGDKIFGIRSFSVTLGQKRVFWT 318

Query: 251 CISLLEVAYTVAILVGATSPFAWSKLITV 279
           C+SLL++AY VAILVGATSPF WSK I+V
Sbjct: 319 CVSLLQMAYAVAILVGATSPFIWSKFISV 347

Source: Brassica napus

Species: Brassica napus

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|377657555|gb|AFB74211.1| homogentisate phytyltransferase [Brassica napus]

 Score =  319 bits (817), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 177/330 (53%), Positives = 217/330 (65%), Gaps = 73/330 (22%)

Query: 10  KGLQVSRCKVWNIIDRTTVVKLERYHLKHHIRGAKDRSIY--HQKIKIKHLANAASGHPL 67
            G +V RC   N++ +       R +L   + G +  S++    + K +  ANA +G   
Sbjct: 31  SGNRVLRC---NVVAKPK----SRTNLVTRLDGQESSSLFLLCSRHKTRFQANATTG--- 80

Query: 68  QSNQPDDYKPKSPLNSVINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFT 127
              QP+ + PKS  NS  ++LDAFYRFSRPHTVIGT LSI+SV+ LAVEKVSDISPL FT
Sbjct: 81  ---QPEAFDPKSKPNSFRDSLDAFYRFSRPHTVIGTVLSILSVSFLAVEKVSDISPLLFT 137

Query: 128 GVLEAIAAALMMNIYIVGLNQLSDIEIDK-----LPL----------------------- 159
           G+LEA+ AALMMNIYIVGLNQLSD+EIDK     LPL                       
Sbjct: 138 GILEAVVAALMMNIYIVGLNQLSDVEIDKVNKPYLPLASGEYSVKTGIAIVASFSIMSFW 197

Query: 160 LRW------------------------------KRFAVAAAMCILAVRAVVVQLAFYLHM 189
           L W                              KRFA+ AAMCILAVRA++VQ+AFYLH+
Sbjct: 198 LGWIVGSWPLFWALFVSFILGTAYSINLPLLRWKRFALVAAMCILAVRAIIVQIAFYLHI 257

Query: 190 QTHVYRRPAVFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFW 249
           QTHV+ RP +F++PLIFATAFMSFFSVVIALFKD+PD+EGDK FGIR+F+V LGQ+RVFW
Sbjct: 258 QTHVFGRPVMFTRPLIFATAFMSFFSVVIALFKDIPDIEGDKIFGIRSFSVTLGQERVFW 317

Query: 250 TCISLLEVAYTVAILVGATSPFAWSKLITV 279
           TC+SLL++AY VAILVGATSPF WSK+I+V
Sbjct: 318 TCVSLLQMAYAVAILVGATSPFIWSKVISV 347

Source: Brassica napus

Species: Brassica napus

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806410|ref|NP_001241496.1| homogentisate phytyltransferase 1, chloroplastic-like [Glycine max] gi|81295666|gb|ABB70126.1| homogentisate phytyltransferase VTE2-1 [Glycine max]

 Score =  317 bits (813), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 175/301 (58%), Positives = 204/301 (67%), Gaps = 60/301 (19%)

Query: 36  LKHHIRGAKDRSIYHQKIKIKHLANAASGHPLQSNQPDDYKPKSPLNSVINALDAFYRFS 95
           L HH +   +     +K  IK +  A S    +S +P  + PKS L+SV N+LDAFYRFS
Sbjct: 49  LNHHYKSI-EGGCTCKKCNIKFVVKATSEKSFES-EPQAFDPKSILDSVKNSLDAFYRFS 106

Query: 96  RPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEID 155
           RPHTVIGTALSI+SV+LLAVEK+SDISPLFFTGVLEA+ AAL MNIYIVGLNQLSD+EID
Sbjct: 107 RPHTVIGTALSIISVSLLAVEKISDISPLFFTGVLEAVVAALFMNIYIVGLNQLSDVEID 166

Query: 156 K-----LPL-----------------------LRW------------------------- 162
           K     LPL                       L W                         
Sbjct: 167 KINKPYLPLASGEYSFETGVTIVASFSILSFWLGWVVGSWPLFWALFVSFVLGTAYSINV 226

Query: 163 -----KRFAVAAAMCILAVRAVVVQLAFYLHMQTHVYRRPAVFSKPLIFATAFMSFFSVV 217
                KRFAV AAMCILAVRAV+VQLAF+LH+QTHVY+RP VFS+ LIFATAFMSFFSVV
Sbjct: 227 PLLRWKRFAVLAAMCILAVRAVIVQLAFFLHIQTHVYKRPPVFSRSLIFATAFMSFFSVV 286

Query: 218 IALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGATSPFAWSKLI 277
           IALFKD+PD+EGDK FGI++F+VRLGQK VFWTC+ LLE+AY VA+LVGA SP  WSK++
Sbjct: 287 IALFKDIPDIEGDKVFGIQSFSVRLGQKPVFWTCVILLEIAYGVALLVGAASPCLWSKIV 346

Query: 278 T 278
           T
Sbjct: 347 T 347

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|374461278|gb|AEZ53107.1| aromatic prenyltransferase [Epimedium acuminatum]

 Score =  317 bits (811), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 172/326 (52%), Positives = 214/326 (65%), Gaps = 59/326 (18%)

Query: 12  LQVSRCKVWNIIDRTTVVKLERYHLKHHIRGAKDRSIYHQKIKIKHLANAASGHPLQSNQ 71
           ++ +    W+  +R    +L+ + + HHI    ++S ++++   K L NA S  P  S +
Sbjct: 36  IRFANSSAWSTQERRYFGQLQGHLINHHITIDAEKSSFYRRADKKGLVNATSEPPFAS-E 94

Query: 72  PDDYKPKSPLNSVINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLE 131
           P+ Y P +   S+ +A DAFYRFSRPHTVIGTALSI+SV+LLA+E++SD+SPLFFTG+LE
Sbjct: 95  PESYNPNNFWRSMQSATDAFYRFSRPHTVIGTALSILSVSLLAIERLSDLSPLFFTGLLE 154

Query: 132 AIAAALMMNIYIVGLNQLSDIEIDK-----LPL-----------------------LRW- 162
           AI AAL MNIYIVGLNQL D+EIDK     LPL                       L W 
Sbjct: 155 AIVAALFMNIYIVGLNQLFDVEIDKVNKPYLPLASGEYSIGTGILIVAAFAVMSFWLGWF 214

Query: 163 -----------------------------KRFAVAAAMCILAVRAVVVQLAFYLHMQTHV 193
                                        KRFA+ AAMCILAVRAV+VQLAF+LH+QT V
Sbjct: 215 VGSGPLLWALSISFILGTAYSINLPLLRWKRFALVAAMCILAVRAVIVQLAFFLHIQTFV 274

Query: 194 YRRPAVFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCIS 253
           YRRPA+ ++PLIFATAFMSFFSVVIALFKD+PD+EGD  FGIR+FTVRLGQKRVFW C+ 
Sbjct: 275 YRRPAILTRPLIFATAFMSFFSVVIALFKDIPDIEGDAIFGIRSFTVRLGQKRVFWICVY 334

Query: 254 LLEVAYTVAILVGATSPFAWSKLITV 279
           LLE+AY VA+LVGA SP   SKL+TV
Sbjct: 335 LLEMAYGVAVLVGAASPSPLSKLVTV 360

Source: Epimedium acuminatum

Species: Epimedium acuminatum

Genus: Epimedium

Family: Berberidaceae

Order: Ranunculales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255637849|gb|ACU19244.1| unknown [Glycine max]

 Score =  315 bits (807), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 174/301 (57%), Positives = 203/301 (67%), Gaps = 60/301 (19%)

Query: 36  LKHHIRGAKDRSIYHQKIKIKHLANAASGHPLQSNQPDDYKPKSPLNSVINALDAFYRFS 95
           L HH +  +      +K  IK +  A S    +S +P  + PKS  +SV N+LDAFYRFS
Sbjct: 49  LNHHYKSIEG-GCTCKKCNIKFVVKATSEKSFES-EPQAFDPKSISDSVKNSLDAFYRFS 106

Query: 96  RPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEID 155
           RPHTVIGTALSI+SV+LLAVEK+SDISPLFFTGVLEA+ AAL MNIYIVGLNQLSD+EID
Sbjct: 107 RPHTVIGTALSIISVSLLAVEKISDISPLFFTGVLEAVVAALFMNIYIVGLNQLSDVEID 166

Query: 156 K-----LPL-----------------------LRW------------------------- 162
           K     LPL                       L W                         
Sbjct: 167 KINKPYLPLASGEYSFETGVTIVASFSILSFWLGWVVGSWPLFWALFVSFVLGTAYSINV 226

Query: 163 -----KRFAVAAAMCILAVRAVVVQLAFYLHMQTHVYRRPAVFSKPLIFATAFMSFFSVV 217
                KRFAV AAMCILAVRAV+VQLAF+LH+QTHVY+RP VFS+ LIFATAFMSFFSVV
Sbjct: 227 PLLRWKRFAVLAAMCILAVRAVIVQLAFFLHIQTHVYKRPPVFSRSLIFATAFMSFFSVV 286

Query: 218 IALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGATSPFAWSKLI 277
           IALFKD+PD+EGDK FGI++F+VRLGQK VFWTC+ LLE+AY VA+LVGA SP  WSK++
Sbjct: 287 IALFKDIPDIEGDKVFGIQSFSVRLGQKPVFWTCVILLEIAYGVALLVGAASPCLWSKIV 346

Query: 278 T 278
           T
Sbjct: 347 T 347

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297836742|ref|XP_002886253.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297332093|gb|EFH62512.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  311 bits (797), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 175/328 (53%), Positives = 213/328 (64%), Gaps = 73/328 (22%)

Query: 12  LQVSRCKVWNIIDRTTVVKLERYHLKHHIR--GAKDRSIYHQKIKIKHLANAASGHPLQS 69
           ++V RC      D + VV   ++   + +R  G +   + + K K +   NA +G     
Sbjct: 32  IRVLRC------DSSKVVAKPKFR-NNLVRLDGQESSLLLYSKDKSRFRVNATAG----- 79

Query: 70  NQPDDYKPKSPLNSVINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGV 129
            QP+ +   S   S  ++LDAFYRFSRPHTVIGT LSI+SV+ LAVEKVSDISPL FTG+
Sbjct: 80  -QPEAFDANSKQKSFRDSLDAFYRFSRPHTVIGTVLSILSVSFLAVEKVSDISPLLFTGI 138

Query: 130 LEAIAAALMMNIYIVGLNQLSDIEIDK-----LPL-----------------------LR 161
           LEA+ AALMMNIYIVGLNQLSD+EIDK     LPL                       L 
Sbjct: 139 LEAVVAALMMNIYIVGLNQLSDVEIDKVNKPYLPLASGEYSVNTGIAIVASFSIMSFWLG 198

Query: 162 W------------------------------KRFAVAAAMCILAVRAVVVQLAFYLHMQT 191
           W                              KRFA+ AAMCILAVRA++VQ+AFYLH+QT
Sbjct: 199 WIVGSWPLFWALFVSFMLGTAYSINLPLLRWKRFALVAAMCILAVRAIIVQIAFYLHIQT 258

Query: 192 HVYRRPAVFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTC 251
           HV+ RP +F++PLIFATAFMSFFSVVIALFKD+PD+EGDK FGIR+F+V LGQKRVFWTC
Sbjct: 259 HVFGRPILFTRPLIFATAFMSFFSVVIALFKDIPDIEGDKIFGIRSFSVTLGQKRVFWTC 318

Query: 252 ISLLEVAYTVAILVGATSPFAWSKLITV 279
           ISLL++AY VAILVGATSPF WSK+I+V
Sbjct: 319 ISLLQMAYAVAILVGATSPFIWSKVISV 346

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	320
UNIPROTKB|B1B5P4	407	SfN8DT-2 "Naringenin 8-dimethy	0.384	0.302	0.609	2e-59
TAIR|locus:2044440	393	HPT1 "homogentisate phytyltran	0.384	0.312	0.788	1.9e-51
UNIPROTKB|B1B3P3	410	N8DT-1 "Naringenin 8-dimethyla	0.684	0.534	0.396	5.5e-38
TAIR|locus:4010713740	393	HST "homogentisate prenyltrans	0.559	0.455	0.319	1.8e-12

UNIPROTKB|B1B5P4 SfN8DT-2 "Naringenin 8-dimethylallyltransferase" [Sophora flavescens (taxid:49840)]

 Score = 410 (149.4 bits), Expect = 2.0e-59, Sum P(2) = 2.0e-59
 Identities = 75/123 (60%), Positives = 97/123 (78%)

Query:   157 LPLLRWKRFAVAAAMCILAVRAVVVQLAFYLHMQTHVYRRPAVFSKPLIFATAFMSFFSV 216
             LPLLRWK++ V  A+  +A  AV   L F+LHMQT V++RP  F +PLIF TA +S +++
Sbjct:   238 LPLLRWKKYPVLTAISFIANVAVTRSLGFFLHMQTCVFKRPTTFPRPLIFCTAIVSIYAI 297

Query:   217 VIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGATSPFAWSKL 276
             VIALFKD+PD+EGD+ FGI++ ++RLG KRVFW C+SLLE+AY V ILVGATSP  WSK+
Sbjct:   298 VIALFKDIPDMEGDEKFGIQSLSLRLGPKRVFWICVSLLEMAYGVTILVGATSPILWSKI 357

Query:   277 ITV 279
             ITV
Sbjct:   358 ITV 360

GO:0004659 "prenyltransferase activity" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2044440 HPT1 "homogentisate phytyltransferase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 534 (193.0 bits), Expect = 1.9e-51, P = 1.9e-51
 Identities = 97/123 (78%), Positives = 116/123 (94%)

Query:   157 LPLLRWKRFAVAAAMCILAVRAVVVQLAFYLHMQTHVYRRPAVFSKPLIFATAFMSFFSV 216
             LPLLRWKRFA+ AAMCILAVRA++VQ+AFYLH+QTHV+ RP +F++PLIFATAFMSFFSV
Sbjct:   224 LPLLRWKRFALVAAMCILAVRAIIVQIAFYLHIQTHVFGRPILFTRPLIFATAFMSFFSV 283

Query:   217 VIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGATSPFAWSKL 276
             VIALFKD+PD+EGDK FGIR+F+V LGQKRVFWTC++LL++AY VAILVGATSPF WSK+
Sbjct:   284 VIALFKDIPDIEGDKIFGIRSFSVTLGQKRVFWTCVTLLQMAYAVAILVGATSPFIWSKV 343

Query:   277 ITV 279
             I+V
Sbjct:   344 ISV 346

GO:0004659 "prenyltransferase activity" evidence=IEA;IDA

GO:0005886 "plasma membrane" evidence=ISM

GO:0010189 "vitamin E biosynthetic process" evidence=IMP;TAS

GO:0016021 "integral to membrane" evidence=IEA

GO:0009507 "chloroplast" evidence=ISS

GO:0010176 "homogentisate phytyltransferase activity" evidence=IMP;IDA

GO:0042362 "fat-soluble vitamin biosynthetic process" evidence=TAS

GO:0009266 "response to temperature stimulus" evidence=IMP

GO:0009915 "phloem sucrose loading" evidence=IMP

GO:0031347 "regulation of defense response" evidence=IMP

GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA;IMP

GO:0071555 "cell wall organization" evidence=IMP

GO:0000096 "sulfur amino acid metabolic process" evidence=RCA

GO:0006546 "glycine catabolic process" evidence=RCA

GO:0006733 "oxidoreduction coenzyme metabolic process" evidence=RCA

GO:0006766 "vitamin metabolic process" evidence=RCA

GO:0008652 "cellular amino acid biosynthetic process" evidence=RCA

GO:0009072 "aromatic amino acid family metabolic process" evidence=RCA

GO:0009106 "lipoate metabolic process" evidence=RCA

GO:0009108 "coenzyme biosynthetic process" evidence=RCA

GO:0009117 "nucleotide metabolic process" evidence=RCA

GO:0009416 "response to light stimulus" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0015994 "chlorophyll metabolic process" evidence=RCA

GO:0019216 "regulation of lipid metabolic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019748 "secondary metabolic process" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0031408 "oxylipin biosynthetic process" evidence=RCA

GO:0044272 "sulfur compound biosynthetic process" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

UNIPROTKB|B1B3P3 N8DT-1 "Naringenin 8-dimethylallyltransferase 1, chloroplastic" [Sophora flavescens (taxid:49840)]

 Score = 407 (148.3 bits), Expect = 5.5e-38, P = 5.5e-38
 Identities = 92/232 (39%), Positives = 138/232 (59%)

Query:    93 RFSRPHTVIGTA-LSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSD 151
             + ++P   + +  LS  +V ++    +  I  L F  ++++    L   ++I  +   S 
Sbjct:   182 KINKPDLPLASGKLSFRNVVIITASSL--ILGLGFAWIVDSWP--LFWTVFISCM-VASA 236

Query:   152 IEIDKLPLLRWKRFAVAAAMCILAVRAVVVQLAFYLHMQTHVYRRPAVFSKPLIFATAFM 211
               +D LPLLRWK++ V  A+  +A  AV   L F+LHMQT V++RP  F +PLIF TA +
Sbjct:   237 YNVD-LPLLRWKKYPVLTAINFIADVAVTRSLGFFLHMQTCVFKRPTTFPRPLIFCTAIV 295

Query:   212 SFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGATSPF 271
             S +++VIALFKD+PD+EGD+ FGI++ ++RLG KRVFW C+SLLE+ Y V ILVGATSP 
Sbjct:   296 SIYAIVIALFKDIPDMEGDEKFGIQSLSLRLGPKRVFWICVSLLEMTYGVTILVGATSPI 355

Query:   272 AWSKLITVYFSFTLD-----HISCCPLNF-IPLNDSFFCLYNLRAVYFVLLP 317
              WSK+ITV     L      H     L   + L+  +  ++ L    + L+P
Sbjct:   356 LWSKIITVLGHAVLASVLWYHAKSVDLTSNVVLHSFYMFIWKLHTAEYFLIP 407

GO:0004659 "prenyltransferase activity" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:4010713740 HST "homogentisate prenyltransferase" [Arabidopsis thaliana (taxid:3702)]

 Score = 189 (71.6 bits), Expect = 1.8e-12, P = 1.8e-12
 Identities = 61/191 (31%), Positives = 94/191 (49%)

Query:    93 RFSRPHTVIGTA-LSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSD 151
             + ++P+  I    LS+ S  LL +     I+ L   G         + ++Y +GL  L  
Sbjct:   167 KVNKPYLPIAAGDLSVQSAWLLVI--FFAIAGLLVVGFN---FGPFITSLYSLGLF-LGT 220

Query:   152 IEIDKLPLLRWKRFAVAAAMCILAVRAVVVQLAFYLHMQTHVYRRPAVFSKPLIFATAFM 211
             I    +P LR KRF VAA + I  VR  ++    Y H        P  +S P+ F T+F+
Sbjct:   221 IY--SVPPLRMKRFPVAAFLIIATVRGFLLNFGVY-HATRAALGLPFQWSAPVAFITSFV 277

Query:   212 SFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGATSP- 270
             + F++VIA+ KD+PD+EGD+ F I T   +LG + + +    LL V Y  AI +    P 
Sbjct:   278 TLFALVIAITKDLPDVEGDRKFQISTLATKLGVRNIAFLGSGLLLVNYVSAISLAFYMPQ 337

Query:   271 -FAWSKLITVY 280
              F  S +I  +
Sbjct:   338 VFRGSLMIPAH 348

GO:0004161 "dimethylallyltranstransferase activity" evidence=NAS

GO:0004659 "prenyltransferase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

GO:0010236 "plastoquinone biosynthetic process" evidence=IMP

GO:0010355 "homogentisate farnesyltransferase activity" evidence=IDA

GO:0010356 "homogentisate geranylgeranyltransferase activity" evidence=IDA

GO:0010357 "homogentisate solanesyltransferase activity" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0016117 "carotenoid biosynthetic process" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8VWJ1	HPT1_ARATH	2, ., 5, ., 1, ., n, 8	0.5274	0.7968	0.6488	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	320
PLN02878	280	PLN02878, PLN02878, homogentisate phytyltransferas	1e-102
PRK12887	308	PRK12887, ubiA, tocopherol phytyltransferase; Revi	2e-53
pfam01040	259	pfam01040, UbiA, UbiA prenyltransferase family	4e-08
COG0382	289	COG0382, UbiA, 4-hydroxybenzoate polyprenyltransfe	5e-07
PRK12872	285	PRK12872, ubiA, prenyltransferase; Reviewed	0.002
TIGR01476	283	TIGR01476, chlor_syn_BchG, bacteriochlorophyll/chl	0.003

>gnl|CDD|178466 PLN02878, PLN02878, homogentisate phytyltransferase

 Score =  300 bits (771), Expect = e-102
 Identities = 139/233 (59%), Positives = 157/233 (67%), Gaps = 58/233 (24%)

Query: 105 LSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK-----LPL 159
           L I SV+LLAVE +SD SPLFFTG+LEA+  AL+MNIYIVGLNQL DIEIDK     LPL
Sbjct: 1   LGITSVSLLAVESLSDFSPLFFTGLLEALVPALLMNIYIVGLNQLYDIEIDKVNKPYLPL 60

Query: 160 -----------------------------------------------------LRWKRFA 166
                                                                LRWKR A
Sbjct: 61  ASGEFSVATGVAIVTSFAIMSFGMGWIVGSWPLFWALFVSFVLGTAYSINLPLLRWKRSA 120

Query: 167 VAAAMCILAVRAVVVQLAFYLHMQTHVYRRPAVFSKPLIFATAFMSFFSVVIALFKDVPD 226
           VAAA CILAVRAVVVQLAF+LHMQTHV  RPAVF++PLIFATAFM FFSVVIALFKD+PD
Sbjct: 121 VAAASCILAVRAVVVQLAFFLHMQTHVLGRPAVFTRPLIFATAFMCFFSVVIALFKDIPD 180

Query: 227 LEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGATSPFAWSKLITV 279
           +EGD+ FGIR+F+VRLGQKRVFW C++LLE+AY  AILVGA+S F WSK+ITV
Sbjct: 181 VEGDRIFGIRSFSVRLGQKRVFWLCVNLLEMAYAAAILVGASSSFLWSKIITV 233

Length = 280

>gnl|CDD|183813 PRK12887, ubiA, tocopherol phytyltransferase; Reviewed

 Score =  176 bits (449), Expect = 2e-53
 Identities = 86/246 (34%), Positives = 122/246 (49%), Gaps = 57/246 (23%)

Query: 77  PKSPLNSVINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTG-VLEAIAA 135
           PK+PL  + + L A ++FSRPHT+IGT+LS++ + L+A+   S+   L   G +L A  A
Sbjct: 2   PKNPLQPMTSWLYALWKFSRPHTIIGTSLSVLGLYLIAIAASSNTIALANLGLLLGAWIA 61

Query: 136 ALMMNIYIVGLNQLSDIEIDK-----LPL------------------------------- 159
            L  N+YIVGLNQL+DIEID+     LPL                               
Sbjct: 62  CLCGNVYIVGLNQLTDIEIDRINKPHLPLAAGEFSRRQGQRIVIITGILALILAALLGPW 121

Query: 160 -------------------LRWKRFAVAAAMCILAVRAVVVQLAFYLHMQTHVYRRPAVF 200
                              +R KRF + AA+CI  VR V+V L  +LH Q  +     + 
Sbjct: 122 LLITVGISLLIGTAYSLPPIRLKRFPLLAALCIFTVRGVIVNLGLFLHFQWLL-GGSVLI 180

Query: 201 SKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYT 260
              +   T F+  F+  IA+FKD+PD+EGD+ + I TFT+RLG++ VF     +L   Y 
Sbjct: 181 PPTVWLLTLFVLVFTFAIAIFKDIPDMEGDRQYQITTFTLRLGKQAVFKLSCWVLTACYL 240

Query: 261 VAILVG 266
             I VG
Sbjct: 241 GMIAVG 246

Length = 308

>gnl|CDD|216260 pfam01040, UbiA, UbiA prenyltransferase family

 Score = 53.3 bits (128), Expect = 4e-08
 Identities = 33/128 (25%), Positives = 51/128 (39%), Gaps = 8/128 (6%)

Query: 158 PLLRWKRFAVAAAMCILAVRAVVVQLAFYLHMQTHVYRRPAVFSKPLIFATAFMSFFSVV 217
           P LR KR  +   + +     +++ L  Y                PL+     +   S+ 
Sbjct: 110 PPLRLKRRPLLGELVVGLAFGLLILLGAYA--------VGGDIPSPLLLLALPVFLLSLA 161

Query: 218 IALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGATSPFAWSKLI 277
           I L  D+ D+EGD+  GIRT  VRLG+KR       LL  A  + +L+          L 
Sbjct: 162 ILLTNDIRDVEGDRKAGIRTLPVRLGRKRALALYALLLAAALLLLLLLLLLLAPLLLLLA 221

Query: 278 TVYFSFTL 285
            +  +  L
Sbjct: 222 VLLLALAL 229

Length = 259

>gnl|CDD|223459 COG0382, UbiA, 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

 Score = 50.0 bits (120), Expect = 5e-07
 Identities = 42/242 (17%), Positives = 75/242 (30%), Gaps = 59/242 (24%)

Query: 93  RFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDI 152
           R  RP   +   L  +   LLA   +  +  L       A  A  +       +N L+D 
Sbjct: 18  RLDRPIFNLLLLLPALLGLLLAASGLPSLKLLLL-----AFLAFFLARSAGYVINDLADR 72

Query: 153 EIDKL-------PL----LRWKR------------FAVAA---AMCILAVRAVVVQLAFY 186
           EID++       PL    +  K              A+A     +  L   A +V    Y
Sbjct: 73  EIDRINPRTKNRPLPSGRVSVKEALLLAILLLLLGLALALLLNPLAFLLSLAALVLALAY 132

Query: 187 LHMQTHVYRRP--------------------AVFSK---PLIFATAFMSFFSVVIALFKD 223
             ++    R                      AV                 +++   +   
Sbjct: 133 PFLK----RFTFLPQLVLGLAFGLGALAGAAAVGGSLPLLAWLLLLAAILWTLGYDIIYA 188

Query: 224 VPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGATSPFAWSKLITVYFSF 283
           + D+EGD+  G+++  V  G K+     + LL +A  + +L+G  +       +      
Sbjct: 189 IQDIEGDRKAGLKSLPVLFGIKKALALALLLL-LASALLVLLGLLAGLLGLIYLLGLLVA 247

Query: 284 TL 285
            L
Sbjct: 248 AL 249

Length = 289

>gnl|CDD|237241 PRK12872, ubiA, prenyltransferase; Reviewed

 Score = 39.2 bits (92), Expect = 0.002
 Identities = 20/67 (29%), Positives = 38/67 (56%), Gaps = 3/67 (4%)

Query: 194 YRRPAVFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKR--VFWTC 251
           Y +  +FS  L++A  F+   S +  +  D+ D+EGD+  G++T  + LG++R   F   
Sbjct: 154 YYQLTIFSLLLLYAV-FIFLKSFIREIVFDIKDIEGDRKSGLKTLPIVLGKERTLKFLLI 212

Query: 252 ISLLEVA 258
           ++LL + 
Sbjct: 213 LNLLFLI 219

Length = 285

>gnl|CDD|130541 TIGR01476, chlor_syn_BchG, bacteriochlorophyll/chlorophyll synthetase

 Score = 38.2 bits (89), Expect = 0.003
 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 13/66 (19%)

Query: 204 LIFATAFMSFFSVVIALF-----------KDVPDLEGDKTFGIRTFTVRLGQKRVFWTCI 252
            IFA   +++ SVV+AL             D   +EGD+  G+R+  V +G KR     +
Sbjct: 154 AIFAP--LTWQSVVVALIYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVMIGVKRAAIVAV 211

Query: 253 SLLEVA 258
           + + V 
Sbjct: 212 TTINVF 217

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 283

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	320
PLN02878	280	homogentisate phytyltransferase	100.0
PRK12887	308	ubiA tocopherol phytyltransferase; Reviewed	100.0
PRK12895	286	ubiA prenyltransferase; Reviewed	99.93
PRK13106	300	ubiA prenyltransferase; Reviewed	99.93
COG0382	289	UbiA 4-hydroxybenzoate polyprenyltransferase and r	99.92
PRK13595	292	ubiA prenyltransferase; Provisional	99.92
PRK12888	284	ubiA prenyltransferase; Reviewed	99.92
TIGR01475	282	ubiA_other putative 4-hydroxybenzoate polyprenyltr	99.92
PRK12874	291	ubiA prenyltransferase; Reviewed	99.92
PLN02809	289	4-hydroxybenzoate nonaprenyltransferase	99.91
PRK12870	290	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	99.91
PRK12876	300	ubiA prenyltransferase; Reviewed	99.91
PRK12884	279	ubiA prenyltransferase; Reviewed	99.9
PRK12847	285	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	99.9
PRK09573	279	(S)-2,3-di-O-geranylgeranylglyceryl phosphate synt	99.9
TIGR01476	283	chlor_syn_BchG bacteriochlorophyll/chlorophyll syn	99.9
PRK13105	282	ubiA prenyltransferase; Reviewed	99.9
PRK12886	291	ubiA prenyltransferase; Reviewed	99.89
PRK12882	276	ubiA prenyltransferase; Reviewed	99.89
PRK12392	331	bacteriochlorophyll c synthase; Provisional	99.89
PRK12878	314	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	99.89
PLN00012	375	chlorophyll synthetase; Provisional	99.88
PRK12848	282	ubiA 4-hydroxybenzoate octaprenyltransferase; Revi	99.88
PRK07566	314	bacteriochlorophyll/chlorophyll a synthase; Review	99.88
TIGR02056	306	ChlG chlorophyll synthase, ChlG. This model repres	99.88
PRK12873	294	ubiA prenyltransferase; Reviewed	99.87
TIGR01474	281	ubiA_proteo 4-hydroxybenzoate polyprenyl transfera	99.87
PRK12883	277	ubiA prenyltransferase UbiA-like protein; Reviewed	99.86
PRK06080	293	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	99.86
PRK12875	282	ubiA prenyltransferase; Reviewed	99.86
PRK12872	285	ubiA prenyltransferase; Reviewed	99.85
PRK04375	296	protoheme IX farnesyltransferase; Provisional	99.84
TIGR01473	280	cyoE_ctaB protoheme IX farnesyltransferase. This m	99.84
PRK12869	279	ubiA protoheme IX farnesyltransferase; Reviewed	99.83
PRK12871	297	ubiA prenyltransferase; Reviewed	99.83
PRK05951	296	ubiA prenyltransferase; Reviewed	99.83
PRK13362	306	protoheme IX farnesyltransferase; Provisional	99.79
PRK13387	317	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	99.77
PRK07419	304	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	99.76
PRK13592	299	ubiA prenyltransferase; Provisional	99.76
PRK13591	307	ubiA prenyltransferase; Provisional	99.74
PLN02922	315	prenyltransferase	99.71
TIGR02235	285	menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytylt	99.7
TIGR00751	284	menA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	99.66
COG1575	303	MenA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	99.6
PF01040	257	UbiA: UbiA prenyltransferase family; InterPro: IPR	99.6
PLN02776	341	prenyltransferase	99.53
PRK08238	479	hypothetical protein; Validated	99.2
COG0109	304	CyoE Polyprenyltransferase (cytochrome oxidase ass	99.17
KOG1381	353	consensus Para-hydroxybenzoate-polyprenyl transfer	99.01
PRK12324	295	phosphoribose diphosphate:decaprenyl-phosphate pho	98.94
KOG4581	359	consensus Predicted membrane protein [Function unk	96.12
KOG1380	409	consensus Heme A farnesyltransferase [Coenzyme tra	94.32
TIGR02056	306	ChlG chlorophyll synthase, ChlG. This model repres	86.35
PRK12884	279	ubiA prenyltransferase; Reviewed	84.41

>PLN02878 homogentisate phytyltransferase

Probab=100.00  E-value=1.6e-57  Score=429.72  Aligned_cols=214  Identities=67%  Similarity=1.057  Sum_probs=206.2

Q ss_pred             HHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhccc-----------------------------
Q 020838          106 SIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK-----------------------------  156 (320)
Q Consensus       106 ~~l~g~llA~~~~~~~~~~~~~~~L~~lva~l~~n~~i~giNd~fD~EIDk-----------------------------  156 (320)
                      ++++.+++|+++.+|.++.++.++++++++++|||+|++|+|||||+||||                             
T Consensus         2 ~~~~~~l~a~~~~~~~~~~~~~~~l~~~~~~l~~niyivglNd~~D~EIDkINkP~rPIpSG~iS~~~a~~~~~~~~~lg   81 (280)
T PLN02878          2 GITSVSLLAVESLSDFSPLFFTGLLEALVPALLMNIYIVGLNQLYDIEIDKVNKPYLPLASGEFSVATGVAIVTSFAIMS   81 (280)
T ss_pred             chhHHhHHHhhccccccHHHHHHHHHHHHHHHhhhhheechhhhhhhcccccCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence            577889999999899988899999999999999999999999999999999                             


Q ss_pred             -----------------------------cccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHH
Q 020838          157 -----------------------------LPLLRWKRFAVAAAMCILAVRAVVVQLAFYLHMQTHVYRRPAVFSKPLIFA  207 (320)
Q Consensus       157 -----------------------------iP~~RlKr~~~la~~~Il~v~a~iv~Lg~~~h~~~~vlg~~~~~~~~v~~l  207 (320)
                                                   +||.|+||+++++++|++++|++++++|+|+|+++.++|++..+++++++.
T Consensus        82 ~~la~~~g~~~l~~al~~~~~lg~~YS~~lp~lr~k~~~~~aa~~i~~vr~~~v~l~~~~h~~~~~~g~~~~~~~~~~~~  161 (280)
T PLN02878         82 FGMGWIVGSWPLFWALFVSFVLGTAYSINLPLLRWKRSAVAAASCILAVRAVVVQLAFFLHMQTHVLGRPAVFTRPLIFA  161 (280)
T ss_pred             HHHHHHHChHHHHHHHHHHHHHHHHHHccCCCcccHHHHHHHHHHHHHHHHHHhhhhHHHhHHHHHhCCccccchhHHHH
Confidence                                         699999999999999999999999999999999999999988888999999


Q ss_pred             HHHHHHHHHHHHHHhcCCChhhhhhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHH
Q 020838          208 TAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGATSPFAWSKLITVYFSFTLDH  287 (320)
Q Consensus       208 t~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlpv~lG~k~a~~la~~ll~~~y~~~il~g~~~~~~~~~~~~~~~h~vla~  287 (320)
                      ++++++|+.+++++||+||+||||++|++|+|+++|+|++.++|..++.++|++++++|++++..|+++++++||++++.
T Consensus       162 ~~f~~~f~~~i~i~KDi~DieGD~~~Gi~Tlpv~lG~~~~~~i~~~ll~~aY~~~i~~g~~~~~~~~~~~~~~~h~~l~~  241 (280)
T PLN02878        162 TAFMCFFSVVIALFKDIPDVEGDRIFGIRSFSVRLGQKRVFWLCVNLLEMAYAAAILVGASSSFLWSKIITVLGHGILAS  241 (280)
T ss_pred             HHHHHHHHHHHHHHhhCcCchhHHHCCCceechhhChHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhccccccCCCCc------hHHHHHHHHHHHhhccCC
Q 020838          288 ISCCPLNFIPLNDS------FFCLYNLRAVYFVLLPHR  319 (320)
Q Consensus       288 ~L~~~~~~Vd~~~~------~~~~w~lf~~~y~l~p~~  319 (320)
                      +||+|+++||+++|      |||||||||+||+++|+.
T Consensus       242 ~L~~rs~~vD~~sk~~i~~fY~fiwklfy~ey~l~p~~  279 (280)
T PLN02878        242 ILWQRAQSVDLSSKAAITSFYMFIWKLFYAEYFLIPLV  279 (280)
T ss_pred             HHHHHhHhcCcccHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999997      469999999999999985

>PRK12887 ubiA tocopherol phytyltransferase; Reviewed

Probab=100.00  E-value=2.2e-52  Score=400.17  Aligned_cols=241  Identities=38%  Similarity=0.602  Sum_probs=220.0

Q ss_pred             CCCchhhHHHHHHHhhhhhccchhHHhHHHHHHHHHHhhcccCCC-ChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhcc
Q 020838           77 PKSPLNSVINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDI-SPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEID  155 (320)
Q Consensus        77 ~~~~~~~~~~~l~a~~kfsRPhTiigt~l~~l~g~llA~~~~~~~-~~~~~~~~L~~lva~l~~n~~i~giNd~fD~EID  155 (320)
                      |++.+++++.++++++||+||||++|+.+++++++++|.+...+. ....+..++.+++++.++|.|++|+|||+|+|+|
T Consensus         2 ~~~~~~~~~~~l~~~~~l~Rp~t~igt~l~~~~~~l~a~~~~~~~~~~~~~~~~l~~~~~~~~~nv~i~~iNd~~D~~iD   81 (308)
T PRK12887          2 PKNPLQPMTSWLYALWKFSRPHTIIGTSLSVLGLYLIAIAASSNTIALANLGLLLGAWIACLCGNVYIVGLNQLTDIEID   81 (308)
T ss_pred             CcchhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence            678999999999999999999999999999999999876543332 2225667778899999999999999999999999


Q ss_pred             c-------------------------------------------------------cccccchhhHHHHHHHHHHHHHHH
Q 020838          156 K-------------------------------------------------------LPLLRWKRFAVAAAMCILAVRAVV  180 (320)
Q Consensus       156 k-------------------------------------------------------iP~~RlKr~~~la~~~Il~v~a~i  180 (320)
                      |                                                       .||.|+||.|+....|++.+++.+
T Consensus        82 ~inkp~rPiasG~ls~~~a~~~~~~~~~lal~la~~~~~~~~~~~~~~~~lg~~Ys~pP~rlKr~~~~~~~~i~~~~g~i  161 (308)
T PRK12887         82 RINKPHLPLAAGEFSRRQGQRIVIITGILALILAALLGPWLLITVGISLLIGTAYSLPPIRLKRFPLLAALCIFTVRGVI  161 (308)
T ss_pred             hcCCCCCCcCCcccCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCCchhhcccchhHHHHHHHHHHHH
Confidence            8                                                       899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCccchhhhChHHHHHHHHHHHHHHHH
Q 020838          181 VQLAFYLHMQTHVYRRPAVFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYT  260 (320)
Q Consensus       181 v~Lg~~~h~~~~vlg~~~~~~~~v~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlpv~lG~k~a~~la~~ll~~~y~  260 (320)
                      +++|+|.|++.. .+.+...+..++++++++++++++++++||+||+||||+.|+||+|+++|+|++.+++.+++.++|+
T Consensus       162 ~~~g~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~l~~di~D~egD~~~Gi~Tlav~lG~~~a~~l~~~ll~~~y~  240 (308)
T PRK12887        162 VNLGLFLHFQWL-LGGSVLIPPTVWLLTLFVLVFTFAIAIFKDIPDMEGDRQYQITTFTLRLGKQAVFKLSCWVLTACYL  240 (308)
T ss_pred             HHHHHHHHHHHH-HhccccCcHHHHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcchhHHHhHHHHHHHHHHHHHHHHH
Confidence            999999987654 5555567788889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhCcchhHHHHHHHHHHHHHHHhhccccccCCCCc-----h-HHHHHHHHHHHhhccC
Q 020838          261 VAILVGATSPFAWSKLITVYFSFTLDHISCCPLNFIPLNDS-----F-FCLYNLRAVYFVLLPH  318 (320)
Q Consensus       261 ~~il~g~~~~~~~~~~~~~~~h~vla~~L~~~~~~Vd~~~~-----~-~~~w~lf~~~y~l~p~  318 (320)
                      ++++.|+.....+++.++++||++++.++|||+++||++||     | ||||||||+||+++|+
T Consensus       241 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~iw~l~~~ey~~~~~  304 (308)
T PRK12887        241 GMIAVGLLSLPTVNPAFLIVSHLILLALLWWRSQRVDLQDKQAIAQFYQFIWKLFFLEYLLFPI  304 (308)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999998888999999999999999999999999999987     4 6999999999999996

>PRK12895 ubiA prenyltransferase; Reviewed

Probab=99.93  E-value=9.4e-25  Score=207.97  Aligned_cols=205  Identities=13%  Similarity=0.088  Sum_probs=149.2

Q ss_pred             HHHhhhhhccchhHHhHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhccc---------cc
Q 020838           88 LDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK---------LP  158 (320)
Q Consensus        88 l~a~~kfsRPhTiigt~l~~l~g~llA~~~~~~~~~~~~~~~L~~lva~l~~n~~i~giNd~fD~EIDk---------iP  158 (320)
                      ++.|.|+.||+..+.....++.|+++|.+..  .+   ...++...+++.+++++++++||++|+||||         +|
T Consensus         3 ~~~~~el~k~~~t~~al~~a~~g~~lA~~~~--~~---~~~l~l~~~~~~~~rsag~~~Ndi~Dr~iD~~~~RT~~RPLp   77 (286)
T PRK12895          3 FRDIVDYIKLEHTVFDLPFILAGYVIAAGHY--IH---PIKILLILIAAVSARTSAMSINRIEGLRYDMINPRKKDWALV   77 (286)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHhcCCC--CC---HHHHHHHHHHHHHHHHHHHHHHhHHHhcccCCCCcCCCCCCC
Confidence            5678899999888888888888888874321  12   1123345667788999999999999999999         99


Q ss_pred             cccchhhHHHHHHHHHHHHHHHH-----HH-------HH-----HHHHH------HHHhcC----CC---------Ccc-
Q 020838          159 LLRWKRFAVAAAMCILAVRAVVV-----QL-------AF-----YLHMQ------THVYRR----PA---------VFS-  201 (320)
Q Consensus       159 ~~RlKr~~~la~~~Il~v~a~iv-----~L-------g~-----~~h~~------~~vlg~----~~---------~~~-  201 (320)
                      +||+++..++....+....+..+     ++       ..     |.++.      ..++|.    +.         ..+ 
T Consensus        78 sG~is~~~A~~~~~~~~~~~~~~~~~ln~l~~~l~~~~~~l~~~yp~~KR~t~~~~~~lG~~~g~~~l~g~~Av~g~~~~  157 (286)
T PRK12895         78 SGRIKMREAIAFTIIFIAIFEICTFLLNRLVFILSPIVIFLFIIDPFLKRYTAWRHIYMGSIIGLGVLAGYLAVIPAFPY  157 (286)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhCccccHHHHHHHHHhHHHHHHHHHcCCCCc
Confidence            99999987666553332222111     11       11     11111      011111    00         112 


Q ss_pred             -hHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHH
Q 020838          202 -KPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGATSPFAWSKLITVY  280 (320)
Q Consensus       202 -~~v~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlpv~lG~k~a~~la~~ll~~~y~~~il~g~~~~~~~~~~~~~~  280 (320)
                       ...+++...+++|+.+.|++||+||+|+||+.|++|+|+++|++++.+++..++.++.+..++.|.... ++   .+.+
T Consensus       158 ~~~~~~l~~~~~~W~~g~D~iYa~qD~e~D~~~Gv~S~a~~fG~~~~~~i~~~~~~~~~~~~~~~g~~~~-~~---~y~~  233 (286)
T PRK12895        158 NLLIYIIFISSSLWIAGFDIIYVIPDIEYDKINGLKTIMNTYGIKNGLYISDIFHISSLILFWISGIYIR-TL---WYLA  233 (286)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHcCCCchHHHHCCccHHHHHHHHHHHHHHHHHHHHHHHh-hH---HHHH
Confidence             223456677789999999999999999999999999999999999999998899999888888887654 33   6788


Q ss_pred             HHHHHHHHhhccccccCCCCc
Q 020838          281 FSFTLDHISCCPLNFIPLNDS  301 (320)
Q Consensus       281 ~h~vla~~L~~~~~~Vd~~~~  301 (320)
                      +-++.+..+.|||+.+|++|.
T Consensus       234 ~~~~~~~~l~~q~~~~~~~~~  254 (286)
T PRK12895        234 ALIIIYTLVIYQHLIIDPRNP  254 (286)
T ss_pred             HHHHHHHHHHHHHHHhcCCCH
Confidence            999999999999999998874

>PRK13106 ubiA prenyltransferase; Reviewed

Probab=99.93  E-value=2.4e-24  Score=206.33  Aligned_cols=209  Identities=15%  Similarity=0.106  Sum_probs=152.1

Q ss_pred             HHHHHHHhhhhhccchhHHhHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhccc-------
Q 020838           84 VINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK-------  156 (320)
Q Consensus        84 ~~~~l~a~~kfsRPhTiigt~l~~l~g~llA~~~~~~~~~~~~~~~L~~lva~l~~n~~i~giNd~fD~EIDk-------  156 (320)
                      .++++++|.|++||++.+++....+.|+++|.+...  +   +..++.++++..++++++|++|||+|+|||+       
T Consensus        11 ~~~~l~~yl~L~R~~~~~~~l~~~~~g~~la~~~~~--~---~~~l~l~~lg~~l~~~a~~~~Nd~~D~diD~~~~RT~~   85 (300)
T PRK13106         11 TRSKFYIILRFLRIEQTFFSLPMAYLGAFVAIKGIP--P---ISTLILIFLALFFLRTAGMTNDNLADLEIDAKNPRTKN   85 (300)
T ss_pred             hHHHHHHHHHHHccccHHHHHHHHHHHHHHHcCCCC--C---HHHHHHHHHHHHHHHHHHHHHHhhHHhccccCCCccCC
Confidence            456789999999999999999989999888744322  2   2223456778888999999999999999999       


Q ss_pred             --cccccchhhHHHHHHHHHHHH----HHHHH--------HHH-HHHHHHHHhcCCC---------------------Cc
Q 020838          157 --LPLLRWKRFAVAAAMCILAVR----AVVVQ--------LAF-YLHMQTHVYRRPA---------------------VF  200 (320)
Q Consensus       157 --iP~~RlKr~~~la~~~Il~v~----a~iv~--------Lg~-~~h~~~~vlg~~~---------------------~~  200 (320)
                        +|+||++.+.++.........    +..++        ++. ....++..+....                     .+
T Consensus        86 RPl~sG~is~~~A~~~~~~~~~~~~~~~~~ln~~~~~l~~~~~~~~~~Y~~~KR~t~~~~~~lg~~~~~~~~~G~~a~~g  165 (300)
T PRK13106         86 RPLVTGAIKISEAKALITAGLILFFASAYLVNRWALLLSPIVALIAMSYPYMKRYTAFANYHLASIQGLAVFSGAVAVLG  165 (300)
T ss_pred             CCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHhcCCcchHHHHHHHHHHHHHHHHHHHcC
Confidence              999999988766543211110    01010        000 0011111111000                     01


Q ss_pred             ----------chHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHhhCc
Q 020838          201 ----------SKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGATSP  270 (320)
Q Consensus       201 ----------~~~v~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlpv~lG~k~a~~la~~ll~~~y~~~il~g~~~~  270 (320)
                                +.+.+++....++|+.++|++||+||+|+||+.|++|+|+++| +++.+++..++.++.+...+.|....
T Consensus       166 ~~~~~~~~~l~~~~~~l~~~~~lw~~~~d~iya~~D~e~D~~~Gi~Slpv~~G-~~a~~~~~~~~~~~v~l~~~~~~~~~  244 (300)
T PRK13106        166 LYANSLIQVLLRVPWLFVIGTILWAAGFDLYNHIPDAEFDREMGLHSFAVVLG-KWALTFAGLNQLFSVVLDLLGDLYYG  244 (300)
T ss_pred             CcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHccchhhHHHCCCCccHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHhC
Confidence                      1222344555678999999999999999999999999999999 99999999999999999998888777


Q ss_pred             chhHHHHHHHHHHHHHHHhhccccccCCCCc
Q 020838          271 FAWSKLITVYFSFTLDHISCCPLNFIPLNDS  301 (320)
Q Consensus       271 ~~~~~~~~~~~h~vla~~L~~~~~~Vd~~~~  301 (320)
                      .++   .+..+-.+.+.++.|||+.++++++
T Consensus       245 lg~---~y~~~~~~~~~~l~~~~~~~~~~~~  272 (300)
T PRK13106        245 LGP---IAIAATILHGLIMAYAYYLASKKGD  272 (300)
T ss_pred             CcH---HHHHHHHHHHHHHHHHHHHhCCchH
Confidence            666   6777888888999999999988844

>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

Probab=99.92  E-value=9.9e-24  Score=199.57  Aligned_cols=205  Identities=21%  Similarity=0.247  Sum_probs=151.0

Q ss_pred             HHHHHhhhhhccchhHHhHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhccc---------
Q 020838           86 NALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK---------  156 (320)
Q Consensus        86 ~~l~a~~kfsRPhTiigt~l~~l~g~llA~~~~~~~~~~~~~~~L~~lva~l~~n~~i~giNd~fD~EIDk---------  156 (320)
                      +..+.+.|+.||++++...++...+..++..   .++.  +..++.+++++.+++++++++||++|+||||         
T Consensus        11 ~~~~~l~r~~r~i~~l~~~~~~~~~~~~~~~---~~~~--~~~~~l~~l~~~~~~~ag~~iND~~D~eiD~~n~rt~~RP   85 (289)
T COG0382          11 KALLKLLRLDRPIFNLLLLLPALLGLLLAAS---GLPS--LKLLLLAFLAFFLARSAGYVINDLADREIDRINPRTKNRP   85 (289)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHc---CCch--HHHHHHHHHHHHHHHHHhHHHHHHhhhhccCCCCCccCCC
Confidence            3445788888999999888888888777642   2221  4456677888899999999999999999999         


Q ss_pred             cccccchhhHHHHHHHHHHHHHHHH-----HHHH----------HHHHHHHHhcCC--------------------CC--
Q 020838          157 LPLLRWKRFAVAAAMCILAVRAVVV-----QLAF----------YLHMQTHVYRRP--------------------AV--  199 (320)
Q Consensus       157 iP~~RlKr~~~la~~~Il~v~a~iv-----~Lg~----------~~h~~~~vlg~~--------------------~~--  199 (320)
                      +|+||++++..+....++.+.+.++     +.++          +.|  ...+..+                    ..  
T Consensus        86 l~sG~vS~~~a~~~~~~~~~~~~~~a~~l~~~~~~l~~~~~~l~~~Y--~~~Kr~~~~~~~~lg~~~~~~~~~g~~a~~~  163 (289)
T COG0382          86 LPSGRVSVKEALLLAILLLLLGLALALLLNPLAFLLSLAALVLALAY--PFLKRFTFLPQLVLGLAFGLGALAGAAAVGG  163 (289)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH--HHhhcCCchHHHHHHHHHHHHHHHHHHHHhC
Confidence            9999999987665543332222111     0000          111  1111111                    11  


Q ss_pred             -cchHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHH
Q 020838          200 -FSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGATSPFAWSKLIT  278 (320)
Q Consensus       200 -~~~~v~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlpv~lG~k~a~~la~~ll~~~y~~~il~g~~~~~~~~~~~~  278 (320)
                       .+.+.+++..+..+|+++++++||+||+||||+.|++|+|+++|++++.+++...+ .+.+....++.......  .++
T Consensus       164 ~~~~~~~~l~~~~~l~~~~~~~i~~~~D~e~D~~~G~~s~~~~~G~~~a~~l~~~~~-~~~~~~~~~~~~~~~~~--~~~  240 (289)
T COG0382         164 SLPLLAWLLLLAAILWTLGYDIIYAIQDIEGDRKAGLKSLPVLFGIKKALALALLLL-LASALLVLLGLLAGLLG--LIY  240 (289)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHhccCccchHhcCCcchHHHhCchhHHHHHHHHH-HHHHHHHHHHHHHhhch--HHH
Confidence             25667788899999999999999999999999999999999999999999999888 55566665665433221  367


Q ss_pred             HHHHHHHHHHhhccccccCCCC
Q 020838          279 VYFSFTLDHISCCPLNFIPLND  300 (320)
Q Consensus       279 ~~~h~vla~~L~~~~~~Vd~~~  300 (320)
                      ..+..+.+..+++|+..+|.++
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~  262 (289)
T COG0382         241 LLGLLVAALLLLYQILIVDVRD  262 (289)
T ss_pred             HHHHHHHHHHHHHHHHHhcccC
Confidence            8899999999999999998764

>PRK13595 ubiA prenyltransferase; Provisional

Probab=99.92  E-value=3.9e-24  Score=204.22  Aligned_cols=177  Identities=20%  Similarity=0.192  Sum_probs=116.4

Q ss_pred             HHHHHHHhhhhhccchhHHhHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhccc-------
Q 020838           84 VINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK-------  156 (320)
Q Consensus        84 ~~~~l~a~~kfsRPhTiigt~l~~l~g~llA~~~~~~~~~~~~~~~L~~lva~l~~n~~i~giNd~fD~EIDk-------  156 (320)
                      +.+.++.+++.+||.+|+.+..++.+|+..+.+ ..|+.+..   ++..+..++..|.++|++|||||+|+|+       
T Consensus         8 ~~~~l~~ll~~sRP~~wi~t~~~~~~G~~~~g~-~~~~~~~~---~~l~~~~~~p~n~~~~giND~fD~eiDa~Npr~~~   83 (292)
T PRK13595          8 ILLPLRRLLLISRPALWVNTVGTLVTGVWLTGH-LYTLDPGV---LPLLLYLTLPFNLLIYGLNDLADRETDAASPRKGG   83 (292)
T ss_pred             hhhHHHHHHHHhCcHHHHHHHHHHHHHHHHhcC-cccchhHH---HHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCCC
Confidence            345677789999999999999999999976522 22321122   2345666677899999999999999999       


Q ss_pred             cccccchhhHHHHHH--HHHH------HHHHHH-HH----------HHHHHHH--HHHhcCCCC----------------
Q 020838          157 LPLLRWKRFAVAAAM--CILA------VRAVVV-QL----------AFYLHMQ--THVYRRPAV----------------  199 (320)
Q Consensus       157 iP~~RlKr~~~la~~--~Il~------v~a~iv-~L----------g~~~h~~--~~vlg~~~~----------------  199 (320)
                      +|.+|+++.......  +.+.      ..+..+ ++          ..+.|..  ...+.+|..                
T Consensus        84 i~~G~is~~~~~~~~~~~~~~~~~~~l~la~~l~~~~~~l~~v~~~l~~~YS~pPlRlK~rp~l~~l~~~~~g~p~~~~~  163 (292)
T PRK13595         84 WQGARLSPGEVRPLLRAVLLLNAPFLLYLALLLPPAATLLLLLYAALFVGYSLPPLRFKARPFLDGLSNAAYALPLALPA  163 (292)
T ss_pred             CCcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccCccchhcCcchhHHHHHHHHHHHHHHH
Confidence            889999888543321  1110      001111 00          0011110  011111111                


Q ss_pred             ---cchHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCccchhhhChHHHHHHHHHHHHHHHHHHHH
Q 020838          200 ---FSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAIL  264 (320)
Q Consensus       200 ---~~~~v~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlpv~lG~k~a~~la~~ll~~~y~~~il  264 (320)
                         +....+.......+|++++|++||+||+||||+.|+||+|+++|+|++.++|..+..++-+....
T Consensus       164 ~~~g~~~~~~~l~a~~~w~~g~dii~ai~DiegDr~~Gi~Slpv~lG~r~a~~~a~~~~~~a~~~~~~  231 (292)
T PRK13595        164 LALGAPVPWPPLLALMAWSVGKHAFDAAQDIPADRAAGTRTVATTLGVRGTALYALAWFLLAGALLWP  231 (292)
T ss_pred             HHcCCcchHHHHHHHHHHHHHHHHHHhccChHhHHHcCCeechHHhCcHhHHHHHHHHHHHHHHHHHH
Confidence               11112222344568899999999999999999999999999999999999999777666555443

>PRK12888 ubiA prenyltransferase; Reviewed

Probab=99.92  E-value=2.4e-23  Score=197.80  Aligned_cols=208  Identities=15%  Similarity=0.155  Sum_probs=147.7

Q ss_pred             HHHhhhhhccchhHHhHHHHHHHHHHhhc-ccCCCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhccc---------c
Q 020838           88 LDAFYRFSRPHTVIGTALSIVSVALLAVE-KVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK---------L  157 (320)
Q Consensus        88 l~a~~kfsRPhTiigt~l~~l~g~llA~~-~~~~~~~~~~~~~L~~lva~l~~n~~i~giNd~fD~EIDk---------i  157 (320)
                      +++++|+.||++.+.+...++.+.+++.. ....++   +..++.++++++++++.+|.+|||+|+|||+         +
T Consensus         2 ~~~~~~l~r~~~~~~a~~~~~~~~~~~~~~~~~~~~---~~~~~l~~l~~~l~~~a~~~~Nd~~Dr~iD~~~~RT~~RPL   78 (284)
T PRK12888          2 VRAFLRLVAIEHSVFALPFAYIAALTAMFASDGSVH---WADLLLVTVAMVGARTFAMAANRIIDREIDARNPRTAGREL   78 (284)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHHHHHHHHHHhHHhhCCCCCCCCCCCCCC
Confidence            45778888887777766666666666531 111223   2223456788889999999999999999999         9


Q ss_pred             ccccchhhHHHHHHHHHHHHHH------------HHHHH-----HHHHHHH------HHhcCC-------------CCcc
Q 020838          158 PLLRWKRFAVAAAMCILAVRAV------------VVQLA-----FYLHMQT------HVYRRP-------------AVFS  201 (320)
Q Consensus       158 P~~RlKr~~~la~~~Il~v~a~------------iv~Lg-----~~~h~~~------~vlg~~-------------~~~~  201 (320)
                      |++|++.+.++...+.....+.            +..++     .|.++..      .+.|.+             ...+
T Consensus        79 ~sG~is~~~a~~~~~~~~~~~l~l~~~l~~~~~~l~~~~~~~~~~Y~~~Kr~t~~~~~~lg~~~~~~~l~g~~a~~g~~~  158 (284)
T PRK12888         79 VTGAVSVRTAWTGALVALAVFLGAAALLNPLCLALAPLAVAPLVVYPYAKRFTNFPHAILGLAQAVGPVGAWIAVTGTWS  158 (284)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHcCCCC
Confidence            9999998876554422211110            00111     1221110      011110             1233


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHH
Q 020838          202 KPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGATSPFAWSKLITVYF  281 (320)
Q Consensus       202 ~~v~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlpv~lG~k~a~~la~~ll~~~y~~~il~g~~~~~~~~~~~~~~~  281 (320)
                      ...+++...+.+|+.+.++++|+||+|+||+.|++|+|+++|+|++.+++..++.++++...+.|.....++   ++.++
T Consensus       159 ~~~~ll~~~~~~w~~~~~~i~a~~D~e~D~~~Gv~sl~v~~G~~~a~~~~~~~~~~~~~ll~~~~~~~~~~~---~y~~~  235 (284)
T PRK12888        159 WPAVLLGLAVGLWIGGFDLIYACQDAEVDRRIGVRSVPARFGVRAALWASRVAHVVTFALFVWFGLAVGFGA---LWWIG  235 (284)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHCCCcCcchhhCchhHHHHHHHHHHHHHHHHHHHHHHhCCcH---HHHHH
Confidence            445566667788999999999999999999999999999999999999998888888888888888777776   66778


Q ss_pred             HHHHHHHhhccccccCCCCc
Q 020838          282 SFTLDHISCCPLNFIPLNDS  301 (320)
Q Consensus       282 h~vla~~L~~~~~~Vd~~~~  301 (320)
                      -++.+..+.|||+.+|++|.
T Consensus       236 ~~~~~~~l~~~~~~~~~~~~  255 (284)
T PRK12888        236 LAITAGAFAYEHAIVSPTDL  255 (284)
T ss_pred             HHHHHHHHHHHHHHcCccCH
Confidence            88889999999999999873

>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase

Probab=99.92  E-value=2.7e-23  Score=196.01  Aligned_cols=204  Identities=14%  Similarity=0.119  Sum_probs=149.6

Q ss_pred             HHHhhhhhccchhHHhHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhccc---------cc
Q 020838           88 LDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK---------LP  158 (320)
Q Consensus        88 l~a~~kfsRPhTiigt~l~~l~g~llA~~~~~~~~~~~~~~~L~~lva~l~~n~~i~giNd~fD~EIDk---------iP  158 (320)
                      ++.|+|++||++.++....+..|+++|.+...  +   +..++..+++..+++++++.+|||+|+|+|+         +|
T Consensus         2 ~~~~~~L~r~~~~~~~~~~~~~g~~la~~~~~--~---~~~~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~~Rt~~RPl~   76 (282)
T TIGR01475         2 FKDILELIKFEHTVFALPFAYAGALLAAKGLP--G---LKTLILILIAAVSARTAAMAFNRIIDRAIDARNPRTKNRPLV   76 (282)
T ss_pred             HHHHHHHHccccHHHHHHHHHHHHHHhcCCCC--C---HHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccCCCCCC
Confidence            56889999999999998888888888754322  2   2223456778888999999999999999999         99


Q ss_pred             cccchhhHHHHHHHHHHHHH----HHH-----------HHHHHHHHHHHHhcCCC-----------------------Cc
Q 020838          159 LLRWKRFAVAAAMCILAVRA----VVV-----------QLAFYLHMQTHVYRRPA-----------------------VF  200 (320)
Q Consensus       159 ~~RlKr~~~la~~~Il~v~a----~iv-----------~Lg~~~h~~~~vlg~~~-----------------------~~  200 (320)
                      ++|++++.++....+..+.+    ..+           .+..+.|.  ..+....                       ..
T Consensus        77 sG~is~~~a~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~Y~--~~Kr~~~~~~~~~g~~~~~~~~~g~~a~~g~~  154 (282)
T TIGR01475        77 SGLISKKEARTMIILSLALFLSASYFLNPLAFILSPLVLLVLIIYP--YTKRFTFLCHYVLGSTYGLAPLAGWVAVIGTI  154 (282)
T ss_pred             CCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh--hHhccccccHHHHHHHHHHHHHHHHHHHhCCc
Confidence            99998887555432221111    000           00011221  1111100                       11


Q ss_pred             c--hHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHH
Q 020838          201 S--KPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGATSPFAWSKLIT  278 (320)
Q Consensus       201 ~--~~v~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlpv~lG~k~a~~la~~ll~~~y~~~il~g~~~~~~~~~~~~  278 (320)
                      +  ...+.+....++|+.+.+++||+||+|+|++.|++|+|+++|+|++.++...+..++++..++.+...+.++   ++
T Consensus       155 ~~~~~~~ll~~~~~~w~~~~~~i~~~~D~e~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~---~y  231 (282)
T TIGR01475       155 SFFLVAWLLGIGVGFWIAGFDLIYAIQDYEFDRKNGLHSIPARFGIKAALKIASLSHVITFILLLLVGFYVGNGY---IA  231 (282)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCchHHHhchHHHHHHHHHHHHHHHHHHHHHHHHhhCcH---HH
Confidence            2  333445556778999999999999999999999999999999999999999999999988888887766665   66


Q ss_pred             HHHHHHHHHHhhccccccCCCCc
Q 020838          279 VYFSFTLDHISCCPLNFIPLNDS  301 (320)
Q Consensus       279 ~~~h~vla~~L~~~~~~Vd~~~~  301 (320)
                      .++..+.+..++++.+.+|++|+
T Consensus       232 ~~~~~~~~~~l~~~~~~~~~~~~  254 (282)
T TIGR01475       232 LLALILIGLILAYEHYIVDPGDQ  254 (282)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCH
Confidence            77777888899999999988874

A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.

>PRK12874 ubiA prenyltransferase; Reviewed

Probab=99.92  E-value=5.1e-23  Score=196.11  Aligned_cols=214  Identities=16%  Similarity=0.108  Sum_probs=150.9

Q ss_pred             hhHHHHHHHhhhhhccchhHHhHHHHHHHHHHhhccc---CCCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhccc--
Q 020838           82 NSVINALDAFYRFSRPHTVIGTALSIVSVALLAVEKV---SDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK--  156 (320)
Q Consensus        82 ~~~~~~l~a~~kfsRPhTiigt~l~~l~g~llA~~~~---~~~~~~~~~~~L~~lva~l~~n~~i~giNd~fD~EIDk--  156 (320)
                      ++.++++++|+|++||++.+++...++.++++|.+..   ..++   +..++.+++++.+++++.+++|||+|+|||+  
T Consensus         2 ~~~~~~l~~y~~l~r~~~~~~~l~~a~~g~~la~~~~~~~~~~~---~~~~~l~~l~~~l~~~a~~~~Nd~~DrdiD~~~   78 (291)
T PRK12874          2 KKFTKKLKDISELVVFKHSIFSLPFIFIAMIVASKQKNDTGWFG---FKLLILGILAAVSARNFAMAFNRLVDRDIDKDN   78 (291)
T ss_pred             chHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhhhccCCCCC---HHHHHHHHHHHHHHHHHHHHHHhhhhhccccCC
Confidence            4567789999999999999999999999998874211   1223   2334556777778899999999999999999  


Q ss_pred             -------cccccchhhHHHHHHHHHHHHHHHH-----HH------HH--HHHHHHHHhcCCC------------------
Q 020838          157 -------LPLLRWKRFAVAAAMCILAVRAVVV-----QL------AF--YLHMQTHVYRRPA------------------  198 (320)
Q Consensus       157 -------iP~~RlKr~~~la~~~Il~v~a~iv-----~L------g~--~~h~~~~vlg~~~------------------  198 (320)
                             +|+||++.+.++....++.+.+..+     ++      +.  +...++..++...                  
T Consensus        79 ~RT~~RPl~sG~is~~~a~~~~~~~~~~~~~~~~~~n~~~~~l~~~~~~~~~~Y~~~KR~t~~~~~~~g~~~~~~~l~G~  158 (291)
T PRK12874         79 PRTANRPSVDGRISVKSMVLFIVLNALIFIGVSYFINPLAFKLSFPFLIVLGGYSYFKRFSSLAHLVLGLSLGLAPIAGV  158 (291)
T ss_pred             CCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHHHH
Confidence                   9999998887655543322211111     00      00  1111111111100                  


Q ss_pred             -----CcchHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHhhCcchh
Q 020838          199 -----VFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGATSPFAW  273 (320)
Q Consensus       199 -----~~~~~v~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlpv~lG~k~a~~la~~ll~~~y~~~il~g~~~~~~~  273 (320)
                           ..+...+++...+++|+.+.+++++++|+|+||+.|++|+|+++|+|++.+++...+.++.+..++.|......+
T Consensus       159 ~av~g~~~~~~~~l~~~~~~w~~~~~~~~a~~D~~~D~~~Gi~slpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (291)
T PRK12874        159 VAVLGEIPLWSVFLALGVMFWVAGFDLLYSLQDMEFDKKRGLHSIPSKFGEKATLFISRLFHLLAVLFWLLFVWCAHLGL  238 (291)
T ss_pred             HHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCCCcccHHhhhHhHHHHHHHHHHHHHHHHHHHHHHhcchH
Confidence                 123333455566779999999999999999999999999999999999999887777777766666666554444


Q ss_pred             HHHHHHHHHHHHHHHhhccccccCCCCc
Q 020838          274 SKLITVYFSFTLDHISCCPLNFIPLNDS  301 (320)
Q Consensus       274 ~~~~~~~~h~vla~~L~~~~~~Vd~~~~  301 (320)
                         .++++..+.+..++++++.++.+|+
T Consensus       239 ---~~~~~~~~~~~~l~~~~~~~~~~~~  263 (291)
T PRK12874        239 ---FAYLGVIVSALILLYEHYLVRKDFK  263 (291)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHhcCCCh
Confidence               5566777778889999999876543

>PLN02809 4-hydroxybenzoate nonaprenyltransferase

Probab=99.91  E-value=5.5e-23  Score=195.91  Aligned_cols=209  Identities=15%  Similarity=0.109  Sum_probs=142.9

Q ss_pred             HHHHHhhhhhccchhHHhHHHHHH---HHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhccc------
Q 020838           86 NALDAFYRFSRPHTVIGTALSIVS---VALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK------  156 (320)
Q Consensus        86 ~~l~a~~kfsRPhTiigt~l~~l~---g~llA~~~~~~~~~~~~~~~L~~lva~l~~n~~i~giNd~fD~EIDk------  156 (320)
                      +.++.|+|++|.|...++.+..+-   +..++.......+   +..++..++++.+++++.|++||++|+|||+      
T Consensus         4 ~~~~~y~~L~Rl~kp~~~~l~~~p~~~~~~l~a~~~~~~~---~~~l~l~~~g~~~~~~a~~~~Nd~~Dr~iD~~~~RT~   80 (289)
T PLN02809          4 PSLRPYAKLARLDKPIGTWLLAWPCMWSIALAAPPGSLPD---LKMLALFGCGALLLRGAGCTINDLLDRDIDKKVERTK   80 (289)
T ss_pred             hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccCCCCc---HHHHHHHHHHHHHHHHHHHHHHhhHHhccccCCCCCC
Confidence            356788999999998888776622   2222221111112   2223456777788999999999999999998      


Q ss_pred             ---cccccchhhHHHHHHHHHHHHHHHH-----H-------HHH-HHHHHHHHh----------cCCC------------
Q 020838          157 ---LPLLRWKRFAVAAAMCILAVRAVVV-----Q-------LAF-YLHMQTHVY----------RRPA------------  198 (320)
Q Consensus       157 ---iP~~RlKr~~~la~~~Il~v~a~iv-----~-------Lg~-~~h~~~~vl----------g~~~------------  198 (320)
                         +|+||++.+.++....++.+.+..+     +       .+. +...++..+          |.+.            
T Consensus        81 ~RPL~sG~is~~~A~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~Y~~~KR~t~~~~~~lg~~~~~~~l~g~~av~  160 (289)
T PLN02809         81 LRPIASGALTPFQGVGFLGAQLLLGLGILLQLNNYSRILGASSLLLVFTYPLMKRFTFWPQAFLGLTFNWGALLGWAAVK  160 (289)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHhcCcchHHHHHHHHHHHHHHHHHHHh
Confidence               9999999887766543332221111     0       011 111111111          1000            


Q ss_pred             -CcchHHH-HHHHHHHHHHHHHHHHhcCCChhhhhhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHH
Q 020838          199 -VFSKPLI-FATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGATSPFAWSKL  276 (320)
Q Consensus       199 -~~~~~v~-~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlpv~lG~k~a~~la~~ll~~~y~~~il~g~~~~~~~~~~  276 (320)
                       ..+...+ .+.....+|+.+.++++++||+|+||+.|++|+|+++|++...+++. ++.++++..+.+|.....++   
T Consensus       161 g~~~~~~~~~l~~~~~~W~~~~d~~ya~~D~e~D~~~Gi~sl~v~~G~~~~~~i~~-~~~~~~~~l~~~g~~~~~~~---  236 (289)
T PLN02809        161 GSLDPAVVLPLYASGVCWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDDTKLWLTG-FGAASIGGLALSGYNAGLGW---  236 (289)
T ss_pred             CCCChHHHHHHHHHHHHHHHHHHHHHHHhchhhHHhCCCcccchhhcHHHHHHHHH-HHHHHHHHHHHHHHHhcCcH---
Confidence             1112222 25555667899999999999999999999999999999998888884 77778888888888766555   


Q ss_pred             HHHHHHHHHHHHhhccccccCCCCc
Q 020838          277 ITVYFSFTLDHISCCPLNFIPLNDS  301 (320)
Q Consensus       277 ~~~~~h~vla~~L~~~~~~Vd~~~~  301 (320)
                      .+.+++++.+..|+||++.||++|.
T Consensus       237 ~~~~~~~~~~~~l~~~~~~v~~~~~  261 (289)
T PLN02809        237 PYYAGLAAAAGHLAWQIQTVDLSSR  261 (289)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCH
Confidence            5567999999999999999999874

>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=99.91  E-value=8e-23  Score=194.49  Aligned_cols=205  Identities=15%  Similarity=0.060  Sum_probs=142.6

Q ss_pred             HHHHHhhhhhccchhHHhH---HHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhccc------
Q 020838           86 NALDAFYRFSRPHTVIGTA---LSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK------  156 (320)
Q Consensus        86 ~~l~a~~kfsRPhTiigt~---l~~l~g~llA~~~~~~~~~~~~~~~L~~lva~l~~n~~i~giNd~fD~EIDk------  156 (320)
                      +.+++|+|++|||+..++.   ++++.|.++|.+..  .+   +..++.++++.++++++.|++|||+|+|||+      
T Consensus         7 ~~~~~y~~L~R~~kp~~~~l~~~~~~~g~~lA~~~~--~~---~~~~~l~~lg~~~~~~a~~~~Nd~~D~~iD~~~~Rt~   81 (290)
T PRK12870          7 PTWLAIIRLLRWDKPAGRLILMIPALWAVFLAAHGL--PP---LPLVGIIILGALATSAAGCVVNDLWDRDIDPQVERTR   81 (290)
T ss_pred             hhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHccCC--CC---HHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCccc
Confidence            4677999999999988887   46777777764332  22   2223445677778899999999999999997      


Q ss_pred             ---cccccchhhHHHHHHHHHHHHHHHH-----HHH----------HHHHHHHHHhcC---C------------------
Q 020838          157 ---LPLLRWKRFAVAAAMCILAVRAVVV-----QLA----------FYLHMQTHVYRR---P------------------  197 (320)
Q Consensus       157 ---iP~~RlKr~~~la~~~Il~v~a~iv-----~Lg----------~~~h~~~~vlg~---~------------------  197 (320)
                         +|+||++.+.++.....+...+.++     +++          .++|  +..+..   |                  
T Consensus        82 ~RPL~sG~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~Y--~~~KR~t~~~~~~lg~~~~~~~l~g~~a  159 (290)
T PRK12870         82 FRPLASRRLSVKVGIVIAIVALLCAAGLAFFLNPLSFWLCVAAVPVIFLY--PLAKRVFPVPQLVLAIAWGFAVLISWSA  159 (290)
T ss_pred             CCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh--hhhhhccccceeeehHHHHhHHHHHHHH
Confidence               9999999887655543332222111     000          0112  110100   0                  


Q ss_pred             --CCcchHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHhhCcchhHH
Q 020838          198 --AVFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGATSPFAWSK  275 (320)
Q Consensus       198 --~~~~~~v~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlpv~lG~k~a~~la~~ll~~~y~~~il~g~~~~~~~~~  275 (320)
                        ...+...+++...+++|+.+.++++++||+|+|++.|++|+|+++|+|++.+++. ++.++......+|...+.++  
T Consensus       160 ~~g~~~~~~~~l~~~~~lw~~~~d~~~a~~D~e~D~~~G~~slav~~G~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~--  236 (290)
T PRK12870        160 VTGHLDLGTWLLWAATVFWTLGFDTVYAMSDREDDLRIGVNSSAIFFGRYAPEAIGL-FFALTVGFLAILGVLLELHL--  236 (290)
T ss_pred             HcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHCCCcchhHHhccccHHHHHH-HHHHHHHHHHHHHHHhCCcH--
Confidence              0123445566677789999999999999999999999999999999999998887 55666666666777665554  


Q ss_pred             HHHHHHHHHHHHHhhcccccc--CCCCc
Q 020838          276 LITVYFSFTLDHISCCPLNFI--PLNDS  301 (320)
Q Consensus       276 ~~~~~~h~vla~~L~~~~~~V--d~~~~  301 (320)
                       .+..+-.+.+..+.||+..+  |.+|+
T Consensus       237 -~y~~~~~~~~~~l~~~~~~~~~~~~~~  263 (290)
T PRK12870        237 -PFWIGLAIAAVLWARQYRRLRQANLPP  263 (290)
T ss_pred             -HHHHHHHHHHHHHHHHHHHhcccCCCh
Confidence             55566667788899999999  54443

>PRK12876 ubiA prenyltransferase; Reviewed

Probab=99.91  E-value=1.3e-22  Score=194.51  Aligned_cols=214  Identities=13%  Similarity=0.049  Sum_probs=144.0

Q ss_pred             hhHHHHHHHhhhhhccchhHHhHHHHHHHHHHhh--cccCC-CChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhccc--
Q 020838           82 NSVINALDAFYRFSRPHTVIGTALSIVSVALLAV--EKVSD-ISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK--  156 (320)
Q Consensus        82 ~~~~~~l~a~~kfsRPhTiigt~l~~l~g~llA~--~~~~~-~~~~~~~~~L~~lva~l~~n~~i~giNd~fD~EIDk--  156 (320)
                      ++++.++ .++||+  ||+++.+++..+..+.+.  |...+ ++...+..++++.++++.+++++|++|||+|+|||+  
T Consensus         2 ~~~~~~~-~~i~~~--ht~Falpfa~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~a~~~~Rsag~~~Nd~~DrdiD~~~   78 (300)
T PRK12876          2 MRIKYFQ-QLINCK--YALFSALFLSASTVFALSLPEISFSLFSLGGIKTISLGGSAFFCARTVGIIVNQIIDCAIDKKN   78 (300)
T ss_pred             chHHHHH-HHHHHH--HHHHHHHHHHHHHHHHhccccccCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCCC
Confidence            4567776 899999  999999999888776642  11112 111124445677899999999999999999999999  


Q ss_pred             -------cccccchhhHHHHHHHHHHHHHHH----H-HH-------HHH-HHHHHH----------HhcCCC--------
Q 020838          157 -------LPLLRWKRFAVAAAMCILAVRAVV----V-QL-------AFY-LHMQTH----------VYRRPA--------  198 (320)
Q Consensus       157 -------iP~~RlKr~~~la~~~Il~v~a~i----v-~L-------g~~-~h~~~~----------vlg~~~--------  198 (320)
                             +|.||++.+.++....+..+.+.+    + ++       +.. ...++.          ++|.+.        
T Consensus        79 ~RT~~RPLpsG~is~~~A~~~~~~~~~~~~~l~~~ln~l~~~l~~~~~~~~~iY~~~KR~t~~~~~vLGl~~~~~~l~~~  158 (300)
T PRK12876         79 PRTSSRVLPAKLLSINFSMLLLTLCSFLFLSLCWLLNPLCFSLAVLSTLLMIIYPYTKRVTFLCHWILGLVYYLAILMNF  158 (300)
T ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHH
Confidence                   999999988765554322111111    1 11       110 011111          111100        


Q ss_pred             ---C---cch----HHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHhh
Q 020838          199 ---V---FSK----PLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGAT  268 (320)
Q Consensus       199 ---~---~~~----~v~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlpv~lG~k~a~~la~~ll~~~y~~~il~g~~  268 (320)
                         .   .+.    ..++.+..+++|..+.|++|++||+||||+.|++|+|+++|++++.+++..++.++.+..+++|..
T Consensus       159 ~Av~~~~~~~~l~~~~~lw~~~~~~~~~g~DiiYa~qD~e~D~~~Gl~Slpv~fG~~~a~~ia~~~~~l~~~~l~~~g~~  238 (300)
T PRK12876        159 FAIIETPLSFSLFCMASLWGISFGMIIAANDIIYAIQDLEFDRKEGLFSIPARFGEKKAIRIASANLIASAIAYLLIGYF  238 (300)
T ss_pred             HHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHhhHHHcCCccchHHHCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence               0   111    122344556667779999999999999999999999999999999999999999988888888887


Q ss_pred             CcchhHHHHHHHHHHHHHHHh-hccc-cccCCCC
Q 020838          269 SPFAWSKLITVYFSFTLDHIS-CCPL-NFIPLND  300 (320)
Q Consensus       269 ~~~~~~~~~~~~~h~vla~~L-~~~~-~~Vd~~~  300 (320)
                      .+.++  ..+..+-++.+..+ .+|| +.+|.++
T Consensus       239 ~~l~~--~~y~~~~~~~~~~l~~~~~~~~~~~~~  270 (300)
T PRK12876        239 VSNKK--IFYLCSLVPLTVILKTIKHYSLIDKKK  270 (300)
T ss_pred             hhccH--HHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence            66554  23455555444444 5666 7775543

>PRK12884 ubiA prenyltransferase; Reviewed

Probab=99.90  E-value=3.4e-22  Score=187.44  Aligned_cols=217  Identities=18%  Similarity=0.228  Sum_probs=144.1

Q ss_pred             HHHHHhhhhhccchhHHhHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhccc-------cc
Q 020838           86 NALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK-------LP  158 (320)
Q Consensus        86 ~~l~a~~kfsRPhTiigt~l~~l~g~llA~~~~~~~~~~~~~~~L~~lva~l~~n~~i~giNd~fD~EIDk-------iP  158 (320)
                      +++++++|++||++.+++.+..+.|+++|.+.   ++   ...++.++++..++.++++.+|||+|+|+|+       +|
T Consensus         2 ~~l~~~~~l~R~~~~~~~~~~~~~g~~la~~~---~~---~~~~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~r~~Rpl~   75 (279)
T PRK12884          2 TKMKAYLELLRPEHGLMAGIAVVLGAIIALGG---LP---LDEALLGFLTAFFASGSANALNDYFDYEVDRINRPDRPIP   75 (279)
T ss_pred             hHHHHHHHHhhhhHHHHHHHHHHHHHHHHCCC---Cc---hHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhccCCCCCCC
Confidence            36789999999999999999999999887442   22   1123445677788888999999999999998       89


Q ss_pred             cccchhhHHHHHHHHHHHHHHHH----H--------HHH-HHHHHHHHhc-CCCC----------------------cch
Q 020838          159 LLRWKRFAVAAAMCILAVRAVVV----Q--------LAF-YLHMQTHVYR-RPAV----------------------FSK  202 (320)
Q Consensus       159 ~~RlKr~~~la~~~Il~v~a~iv----~--------Lg~-~~h~~~~vlg-~~~~----------------------~~~  202 (320)
                      .+|++.+.++....++.+.+.++    +        ++. +...++..++ .+..                      .+.
T Consensus        76 ~G~is~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ys~~lK~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  155 (279)
T PRK12884         76 SGRISRREALLLAILLFILGLIAAYLISPLAFLVVILVSVLGILYNWKLKEYGLIGNLYVAFLTGMTFIFGGIAVGELNE  155 (279)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHHhCCCch
Confidence            99998887655443322221111    0        000 1111121112 1110                      111


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHH
Q 020838          203 PLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGATSPFAWSKLITVYFS  282 (320)
Q Consensus       203 ~v~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlpv~lG~k~a~~la~~ll~~~y~~~il~g~~~~~~~~~~~~~~~h  282 (320)
                      ..+++...+++|+.+.++.+|++|+|+||+.|++|+|+++|+|++.+++..++.+.++..++.++.....|   .+.++-
T Consensus       156 ~~~~l~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~y~~~~  232 (279)
T PRK12884        156 AVILLAAMAFLMTLGREIMKDIEDVEGDRLRGARTLAILYGEKIAGRIAAALFILAVLLSPLPYLFGIFNI---LYLAPV  232 (279)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHcCCeeechHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHH
Confidence            34445556678889999999999999999999999999999999999999888888887665554432233   444454


Q ss_pred             HHHHHHhhccc-cccCCCC--chHHHHHHHHH
Q 020838          283 FTLDHISCCPL-NFIPLND--SFFCLYNLRAV  311 (320)
Q Consensus       283 ~vla~~L~~~~-~~Vd~~~--~~~~~w~lf~~  311 (320)
                      .+....+.+++ +.++.+|  +++..++.+..
T Consensus       233 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  264 (279)
T PRK12884        233 LVADLIFLYSAYSLLRSQDRETIRKVRKITLT  264 (279)
T ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence            55555665665 5555544  24544444443

>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=99.90  E-value=6.7e-22  Score=186.95  Aligned_cols=207  Identities=17%  Similarity=0.173  Sum_probs=141.1

Q ss_pred             HHHHHHHhhhhhccchhHHhH---HHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhccc----
Q 020838           84 VINALDAFYRFSRPHTVIGTA---LSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK----  156 (320)
Q Consensus        84 ~~~~l~a~~kfsRPhTiigt~---l~~l~g~llA~~~~~~~~~~~~~~~L~~lva~l~~n~~i~giNd~fD~EIDk----  156 (320)
                      ++.++++++|++|||+..++.   ++++.|+++|.... ..+   +...+..++++.+++++.|.+|||+|+|+|+    
T Consensus         3 ~~~~~~~~~~l~R~~kp~~~~l~~~~~~~g~~la~~~~-~~~---~~~~ll~~l~~~l~~~a~~~~Nd~~D~~iD~~~~R   78 (285)
T PRK12847          3 ILMKFLAYFKLMRLHKPIGILLVFFPTLFGLLLASHSL-LPD---ISLLVLFIIGSVLMRSAGCIINDIFDRKIDKHVAR   78 (285)
T ss_pred             hHHHHHHHHHHHCcchHHHHHHHHHHHHHHHHHHhCcc-CCc---HHHHHHHHHHHHHHHHHHHHHHhHHHhhhccCCCc
Confidence            455678999999999887644   66677777764322 122   2234556777788899999999999999997    


Q ss_pred             -----cccccchhhHHHHHHHHHHHHHHHH----H--------HH---HHHHHHHHHhcCC-------------------
Q 020838          157 -----LPLLRWKRFAVAAAMCILAVRAVVV----Q--------LA---FYLHMQTHVYRRP-------------------  197 (320)
Q Consensus       157 -----iP~~RlKr~~~la~~~Il~v~a~iv----~--------Lg---~~~h~~~~vlg~~-------------------  197 (320)
                           +|+||++.+.++....++...+.++    +        ++   .+.|  +. .++.                   
T Consensus        79 t~~Rpl~sG~is~~~a~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~Y--~~-~Kr~~~~~~~~~g~~~~~~~l~~  155 (285)
T PRK12847         79 TKNRPLASGALSVKQALILLFILLLIALVILLLLNKTTIYLSFIAVILIVLY--PL-MKRFFYWPQLFLGFTFNMGILMA  155 (285)
T ss_pred             ccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhc--cc-cccCCcccHHHHHHHHHHHHHHH
Confidence                 8999998887655443332221111    0        00   0111  11 1110                   


Q ss_pred             -----CCcchHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHhhCcch
Q 020838          198 -----AVFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGATSPFA  272 (320)
Q Consensus       198 -----~~~~~~v~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlpv~lG~k~a~~la~~ll~~~y~~~il~g~~~~~~  272 (320)
                           ...+...+++....++|+.+.++++|++|+|+|++.|++|+|+++|+|++.+++.......++..+ ++...+..
T Consensus       156 ~~a~~g~~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~~~-~~~~~~~~  234 (285)
T PRK12847        156 FAAVQNQLDIEAILLYIGCIFWTIGYDTIYAYQDKKDDLKIGVKSTAIYFGNKTRKYILRLYIISLILWLI-LGIISSLH  234 (285)
T ss_pred             HHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHcCCchhHHHhccccHHHHHHHHHHHHHHHHH-HHHHhcCc
Confidence                 123344455666677899999999999999999999999999999999999998877666665544 34443333


Q ss_pred             hHHHHHHHHHHHHHHHhhccccccCCCCc
Q 020838          273 WSKLITVYFSFTLDHISCCPLNFIPLNDS  301 (320)
Q Consensus       273 ~~~~~~~~~h~vla~~L~~~~~~Vd~~~~  301 (320)
                      +   .+.++.++.+..+++++..+|.+|.
T Consensus       235 ~---~~y~~~~~~~~~l~~~~~~~~~~~~  260 (285)
T PRK12847        235 N---IFYLAILAAAGIFYYQYKLLDFDNP  260 (285)
T ss_pred             H---HHHHHHHHHHHHHHHHHHHhCCCCH
Confidence            3   3344666667789999999998763

>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed

Probab=99.90  E-value=6.5e-22  Score=186.33  Aligned_cols=196  Identities=20%  Similarity=0.276  Sum_probs=130.6

Q ss_pred             HHHhhhhhccchhHHhHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhccc-------cccc
Q 020838           88 LDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK-------LPLL  160 (320)
Q Consensus        88 l~a~~kfsRPhTiigt~l~~l~g~llA~~~~~~~~~~~~~~~L~~lva~l~~n~~i~giNd~fD~EIDk-------iP~~  160 (320)
                      +++++|++|||++.+..++++.|+++|.+.  ..+   +..++.++++..++++.+|.+|||+|+|+|+       +|++
T Consensus         3 ~~~~~~l~Rp~~~~~~~~~~~~g~~la~~~--~~~---~~~~~l~~l~~~l~~~~~~~iNd~~D~~iD~~~~~~Rpl~sG   77 (279)
T PRK09573          3 IKAYFELIRPKNCIGASIGAIIGYLIASNF--KID---LKGIILAALVVFLVCAGGNVINDIYDIEIDKINKPERPIPSG   77 (279)
T ss_pred             HHHHHHHHhHhHHHHHHHHHHHHHHHHccC--Ccc---hHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcCCC
Confidence            567999999999999999999998887432  122   2223455677778899999999999999999       9999


Q ss_pred             cchhhHHHHHHHHHHHHHHHH----H--------HH---HHHHHHHHHhcCCCC---------------------cchHH
Q 020838          161 RWKRFAVAAAMCILAVRAVVV----Q--------LA---FYLHMQTHVYRRPAV---------------------FSKPL  204 (320)
Q Consensus       161 RlKr~~~la~~~Il~v~a~iv----~--------Lg---~~~h~~~~vlg~~~~---------------------~~~~v  204 (320)
                      |++++.++....++...+..+    +        ++   .+.|.. ..+..+..                     .....
T Consensus        78 ~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~~~~~~~~~~Ys~-~lKr~~~~~~~~vg~~~G~~~~~g~~~~~~~~~~  156 (279)
T PRK09573         78 RISLKEAKIFSITLFIVGLILSIFINIYAFLIALLNSILLYLYAK-DLKKTGLIGNLIVAYLTGLSFIFGGLAVFNVLRI  156 (279)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-HHhcCCcHHHHHHHHHHHHHHHHHHHHHccchHH
Confidence            998887655543332221111    0        01   122221 11222211                     11223


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCChhhhhhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHHHH
Q 020838          205 IFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGATSPFAWSKLITVYFSFT  284 (320)
Q Consensus       205 ~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlpv~lG~k~a~~la~~ll~~~y~~~il~g~~~~~~~~~~~~~~~h~v  284 (320)
                      +++....++|+.+++++||+||+|+||+.|++|+|+++|+|++.+++.....++.....+.......+|   .+..+-.+
T Consensus       157 ~~l~~~~f~~~~~~~~~~~~~D~~~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~---~y~~~~~~  233 (279)
T PRK09573        157 IILFLCAFFSTWSREIVKDIEDIEGDLKENVITLPIKYGIKKSWYIAKILLILAIVLSPLPYFLGIFGI---YYLIVVII  233 (279)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhHHHCCCccccHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence            345556678889999999999999999999999999999999999988777666665543332211233   44555445


Q ss_pred             HHHHhhcc
Q 020838          285 LDHISCCP  292 (320)
Q Consensus       285 la~~L~~~  292 (320)
                      +...+.|+
T Consensus       234 ~~~~~l~~  241 (279)
T PRK09573        234 CDILFIIA  241 (279)
T ss_pred             HhHHHHHH
Confidence            55555554

>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase

Probab=99.90  E-value=1.4e-22  Score=190.96  Aligned_cols=178  Identities=17%  Similarity=0.174  Sum_probs=122.1

Q ss_pred             HHhhhhhccchhHHhHHHHHHHHHHhhcccCC-CChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhccc-------cccc
Q 020838           89 DAFYRFSRPHTVIGTALSIVSVALLAVEKVSD-ISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK-------LPLL  160 (320)
Q Consensus        89 ~a~~kfsRPhTiigt~l~~l~g~llA~~~~~~-~~~~~~~~~L~~lva~l~~n~~i~giNd~fD~EIDk-------iP~~  160 (320)
                      ++++|++||+|+.+..+++++|+++|...... ++  ....++.++++..+.++++|.+|||+|+|+|+       +|.+
T Consensus         1 ~~~~~l~rp~t~~~~~~~~~~G~~~a~~~~~~~~~--~~~~ll~~~~~~~l~~~~~n~~Nd~~D~~~D~~~~~~Rpi~~G   78 (283)
T TIGR01476         1 RAHIELMKPVTWIPPIWACFCGALASGYERGFPEH--WWLMLLGMLMAGPLGTGFSQSINDYFDRDVDAINEPQRPIPSG   78 (283)
T ss_pred             CceeEecCCceehhHHHHHHHHHHhccCCCCcchh--HHHHHHHHHHHHHHHHHHHHHHHhHhhhCcccCCCCCCCCCCC
Confidence            36789999999999999999999876322111 22  22234446778888899999999999999999       8899


Q ss_pred             cchhhHHHHHHHHHHHHHHHH----------HHHH---H-HHHHHH---Hhc-CCCC-----------------------
Q 020838          161 RWKRFAVAAAMCILAVRAVVV----------QLAF---Y-LHMQTH---VYR-RPAV-----------------------  199 (320)
Q Consensus       161 RlKr~~~la~~~Il~v~a~iv----------~Lg~---~-~h~~~~---vlg-~~~~-----------------------  199 (320)
                      +++.+.+.....++.+.+.++          .++.   + .+.++.   -++ ++..                       
T Consensus        79 ~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~Ys~~p~~lk~~~~~g~~~vg~~~~~~~~~~~~~~~~~  158 (283)
T TIGR01476        79 IISLREVRWNWLVLTVAGLLVALVLGNWLIVLFTVVGIVLAVIYSMPPIKLKRNGWLGPPAVGLSYEGLPWMAGHAIFAP  158 (283)
T ss_pred             CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheecCchhhhccCCCccHHHHHHHHHHHHHHHHHHHhCC
Confidence            998887555443332222111          0111   0 001110   011 1111                       


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHhh
Q 020838          200 FSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGAT  268 (320)
Q Consensus       200 ~~~~v~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlpv~lG~k~a~~la~~ll~~~y~~~il~g~~  268 (320)
                      .+...+++....++++.+++.+||++|+||||+.|++|+|+++|+|++.+++..++.++|+..+.....
T Consensus       159 ~~~~~~~~~~~~~l~~~~i~~~nd~~D~~~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~~~~~~  227 (283)
T TIGR01476       159 LTWQSVVVALIYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVMIGVKRAAIVAVTTINVFQAMVIGLLLI  227 (283)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcCcceEEcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            122223334455678888999999999999999999999999999999999999999988777654443

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.

>PRK13105 ubiA prenyltransferase; Reviewed

Probab=99.90  E-value=4.2e-22  Score=189.52  Aligned_cols=172  Identities=21%  Similarity=0.185  Sum_probs=112.8

Q ss_pred             HHhhhhhccchhHHhHHHHHHHHHHhhcccCCCChHHHHHHHHHHHH-HHHHHHHHhHhhhhhhhhccc------ccccc
Q 020838           89 DAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAA-ALMMNIYIVGLNQLSDIEIDK------LPLLR  161 (320)
Q Consensus        89 ~a~~kfsRPhTiigt~l~~l~g~llA~~~~~~~~~~~~~~~L~~lva-~l~~n~~i~giNd~fD~EIDk------iP~~R  161 (320)
                      |.+++.+||++|+.+++++..|+++| ++.  .++    .++.+.++ ...-|.+.+++|||+|.|.|+      =|.++
T Consensus         2 ~~~~~~~rP~~wi~~a~pf~~g~~la-~~~--~~~----~~l~~~l~~~~~~n~am~~~Ndy~D~~~d~dn~r~~g~~g~   74 (282)
T PRK13105          2 RQLLLSSRPISWINTAYPFAAAYLLA-GGE--IDW----LFVVGTVFFLIPYNLAMYGINDVFDYESDLRNPRKGGVEGA   74 (282)
T ss_pred             hhHHHhcccHHHhccHHHHHHHHHHH-CCC--CCh----HHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCcccCCCCCc
Confidence            56789999999999999999999888 321  222    22223333 344566557899999999999      33444


Q ss_pred             chhhHH----HHHH---HH-HHHHHHHH-H--------HHH---HHHHH----------------------HHHhcC---
Q 020838          162 WKRFAV----AAAM---CI-LAVRAVVV-Q--------LAF---YLHMQ----------------------THVYRR---  196 (320)
Q Consensus       162 lKr~~~----la~~---~I-l~v~a~iv-~--------Lg~---~~h~~----------------------~~vlg~---  196 (320)
                      ++++..    +...   ++ +....... +        ++.   +.|..                      ..++|.   
T Consensus        75 i~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~l~~~ai~~~~~YS~~p~rlk~~gl~d~~t~~~~f~~~~v~G~~~~  154 (282)
T PRK13105         75 VLDRAMHRTTLWASVVTTVPFLVVLLAVGSWASGLVLAVSVFAVVAYSAPGLRFKERPFLDSLTSSTHFVSPALYGLVLA  154 (282)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCCCccccccchHHHHHHHHHHHHHHHHHHHHh
Confidence            555432    1111   11 10110000 0        010   11110                      001110   


Q ss_pred             CCCcchHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHh
Q 020838          197 PAVFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGA  267 (320)
Q Consensus       197 ~~~~~~~v~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlpv~lG~k~a~~la~~ll~~~y~~~il~g~  267 (320)
                      +...+...+++...+.+|+.+++++||+||+||||+.|+||+|+++|+|++.+++..++.++++..+..|.
T Consensus       155 ~~~~~~~~~l~~~~~~~~~~a~~ii~~irDie~Dr~~G~~Tlpv~lG~~~a~~~~~~l~~~a~~~~~~~~~  225 (282)
T PRK13105        155 GAPFTAALWAVLAAFFLWGMASHAFGAVQDVVADREAGIASIATVLGARRTVRLAVGLYAAAAVLMLALPW  225 (282)
T ss_pred             hccccHHHHHHHHHHHHHHHHHHHHHhCcchHhHHHcCCccchHHhcHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            11234445667777888999999999999999999999999999999999999999999999999886653

>PRK12886 ubiA prenyltransferase; Reviewed

Probab=99.89  E-value=1.5e-21  Score=185.99  Aligned_cols=209  Identities=14%  Similarity=0.147  Sum_probs=146.2

Q ss_pred             HHHHHHHhhhhhccchhHHhHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhccc-------
Q 020838           84 VINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK-------  156 (320)
Q Consensus        84 ~~~~l~a~~kfsRPhTiigt~l~~l~g~llA~~~~~~~~~~~~~~~L~~lva~l~~n~~i~giNd~fD~EIDk-------  156 (320)
                      +.++++.|+|++||+..+....+++.|+++|..+.++     +..++..+++..++.++++++|||+|+|||+       
T Consensus         4 ~~~~~~~y~~L~r~~~~~~~~~~~~~g~~lA~~~~~~-----~~~l~~~~l~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~   78 (291)
T PRK12886          4 LLTKLKVFLEMIKFSHTLFALPFAGIGAVLAALGLPG-----ASQLDWILMAMVGARTAAMGFNRLIDAEIDARNPRTAG   78 (291)
T ss_pred             hHHHHHHHHHHhCccchHHHHHHHHHHHHHhccCCCC-----HHHHHHHHHHHHHHHHHHHHHHhHHhhccCCCCCCCCC
Confidence            3456779999999999999999889998887433222     1223445677778888899999999999999       


Q ss_pred             --cccccchhhHHHHHHHHHHHHHH----HHH-----HH---H-HHHHHHHHhcCC-----------------------C
Q 020838          157 --LPLLRWKRFAVAAAMCILAVRAV----VVQ-----LA---F-YLHMQTHVYRRP-----------------------A  198 (320)
Q Consensus       157 --iP~~RlKr~~~la~~~Il~v~a~----iv~-----Lg---~-~~h~~~~vlg~~-----------------------~  198 (320)
                        +|+||++.+.++.+.........    .++     ++   . ....++..+...                       .
T Consensus        79 RPL~sG~is~~~A~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~Y~~~Kr~t~~~~~~~g~~~~~~~l~g~~a~~g  158 (291)
T PRK12886         79 RAIPAGLISKGSAILFIVLSSLLMLFAAWFLNPLCLYLSPPALFFLLLYSYCKRFTALAHVVLGFCLALAPLGAWIAIRG  158 (291)
T ss_pred             CCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccHHHHHHHHHHHHHHHHHHHcC
Confidence              99999988875544321111110    000     00   0 001111111110                       0


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHH
Q 020838          199 VFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGATSPFAWSKLIT  278 (320)
Q Consensus       199 ~~~~~v~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlpv~lG~k~a~~la~~ll~~~y~~~il~g~~~~~~~~~~~~  278 (320)
                      ..+.+.+++...+++|+.+.++++++||.|+||+.|++|+|+++|++++.+++.....+++...++.+.....++   ++
T Consensus       159 ~~~~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~y  235 (291)
T PRK12886        159 TIELPAILLGLAVLFWVAGFDILYALQDLEFDRKEGLHSIPAKLGVNGSLWIARVFHLLMIGFLFALGISAGLGP---WF  235 (291)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHhccHHhHHHcCCcCcchhcCchhHHHHHHHHHHHHHHHHHHHHHHhcCcH---HH
Confidence            123344455555678899999999999999999999999999999999999988888888888777777655555   55


Q ss_pred             HHHHHHHHHHhhccccccCCCC
Q 020838          279 VYFSFTLDHISCCPLNFIPLND  300 (320)
Q Consensus       279 ~~~h~vla~~L~~~~~~Vd~~~  300 (320)
                      .++-++.+..+.++++.++.+|
T Consensus       236 ~~~~~~~~~~~l~~~~~~~~~~  257 (291)
T PRK12886        236 LAGLAVTGILLLYEHWLLRGGD  257 (291)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCC
Confidence            6666667777778888887776

>PRK12882 ubiA prenyltransferase; Reviewed

Probab=99.89  E-value=1.1e-21  Score=184.28  Aligned_cols=170  Identities=21%  Similarity=0.280  Sum_probs=117.3

Q ss_pred             HHHhhhhhccchhHHhHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhccc-------cccc
Q 020838           88 LDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK-------LPLL  160 (320)
Q Consensus        88 l~a~~kfsRPhTiigt~l~~l~g~llA~~~~~~~~~~~~~~~L~~lva~l~~n~~i~giNd~fD~EIDk-------iP~~  160 (320)
                      +++++|++||++...+.++.+.|+++|.+..   ++  ....+.++++..++++..+.+|||+|+|+|+       +|++
T Consensus         4 ~~~~~~l~Rp~~~~~~~~~~~~g~~~a~~~~---~~--~~~~~l~~l~~~l~~~~~~~~Nd~~D~~iD~~~~~~Rpl~~G   78 (276)
T PRK12882          4 VRGYLELTRPVNAVVAGVAAFIGAFIAGGIL---SS--PSLTGLAFAAVFLATGAGNAINDYFDREIDRINRPDRPIPSG   78 (276)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHhcccc---ch--HHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCcCCC
Confidence            5788999999999999999999998874321   11  1113445777788899999999999999998       8999


Q ss_pred             cchhhHHHHHHHHHHHHHHHH----H--------H---HHHHHHHHHHhcC-CCCcc-----------------------
Q 020838          161 RWKRFAVAAAMCILAVRAVVV----Q--------L---AFYLHMQTHVYRR-PAVFS-----------------------  201 (320)
Q Consensus       161 RlKr~~~la~~~Il~v~a~iv----~--------L---g~~~h~~~~vlg~-~~~~~-----------------------  201 (320)
                      +++++.++....++.+.+.++    +        .   ..+.|  +..+++ |...+                       
T Consensus        79 ~is~~~a~~~~~~l~~~g~~~~~~l~~~~~~~~~~~~~~~~~Y--t~~lK~~~~~g~~~vg~~~g~~~~~g~~~~~~~~~  156 (276)
T PRK12882         79 AVSPRGALAFSILLFAAGVALAFLLPPLCLAIALFNSLLLVLY--AETLKGTPGLGNASVAYLTGSTFLFGGAAVGTEGL  156 (276)
T ss_pred             CcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH--HHHHhcccchhHHHHHHHHHHHHHHHHHHhcccch
Confidence            998887655443222221111    0        0   11222  212222 22111                       


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCccchhhhChHHHHHHHHHHHHHHHHHHHH
Q 020838          202 KPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAIL  264 (320)
Q Consensus       202 ~~v~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlpv~lG~k~a~~la~~ll~~~y~~~il  264 (320)
                      ...+.+....++++.+++++||+||+||||+.|++|+|+++|+|++.+++...+.++.+...+
T Consensus       157 ~~~~~l~~~~fl~~~~~~~~~~~~D~e~D~~~G~~tlpv~~G~~~t~~~~~~~~~~~~~~~~~  219 (276)
T PRK12882        157 LALLVLFALAALATLAREIIKDVEDIEGDRAEGARTLPILIGVRKALYVAAAFLLVAVAASPL  219 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHcCCccccHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            112233344456778999999999999999999999999999999999988777666655443

>PRK12392 bacteriochlorophyll c synthase; Provisional

Probab=99.89  E-value=1.1e-21  Score=190.28  Aligned_cols=208  Identities=14%  Similarity=0.243  Sum_probs=131.4

Q ss_pred             HHHHHHHhhhhhccchhHHhHHHHHHHHHHhhccc-CCCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhccc------
Q 020838           84 VINALDAFYRFSRPHTVIGTALSIVSVALLAVEKV-SDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK------  156 (320)
Q Consensus        84 ~~~~l~a~~kfsRPhTiigt~l~~l~g~llA~~~~-~~~~~~~~~~~L~~lva~l~~n~~i~giNd~fD~EIDk------  156 (320)
                      .++.+++++|+.||+|++... ..+.+..+|.+.. +++....+ .+...++...++.++++.+|||+|+|+|+      
T Consensus         8 ~~~~~k~~l~L~kP~t~l~~~-p~~~g~~lA~g~~~~~~~~~~l-~l~~~~~~~~L~~~a~~~iND~~D~~~D~~n~rtR   85 (331)
T PRK12392          8 FVDKIRAHLELLDPVTWISVF-PCLAGGVMASGAMQPTLHDYLL-LLALFLMYGPLGTGFSQSVNDYFDLELDRVNEPTR   85 (331)
T ss_pred             hhHHHHHHHHHHCHHHHHHHH-HHHHHHHHHcCCCCCChhHHHH-HHHHHHHHHHHHHHHHhHHhcceeecccccCCCCC
Confidence            345678999999999999544 4444444564321 12221111 11112233334455678999999999999      


Q ss_pred             -cccccchhhHHHHHHHHHHHHHH----HH-------------H------HHHHHHHH-HHHhcC-CC------------
Q 020838          157 -LPLLRWKRFAVAAAMCILAVRAV----VV-------------Q------LAFYLHMQ-THVYRR-PA------------  198 (320)
Q Consensus       157 -iP~~RlKr~~~la~~~Il~v~a~----iv-------------~------Lg~~~h~~-~~vlg~-~~------------  198 (320)
                       +|+++++++.++....++.+.++    .+             .      +..+.|.. .+-+++ +.            
T Consensus        86 pl~~G~is~~~al~~~~~l~~la~~lg~~L~~~~~~~~~~~il~~~~~~l~l~~~YS~~P~~lKr~~~~g~~~vGl~~~~  165 (331)
T PRK12392         86 PIPSGRLSEKEALWNSIIVLLLAIGLGVWLGLHIGGERGMVIISSILAGLFVAYIYSAPPLKLKKNILTSAPAVGFSYGF  165 (331)
T ss_pred             CCCcCCcCHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHhhhhcCCchhhhccchhHHHHHHHHHHH
Confidence             89999988865554322221111    00             0      01112210 000111 11            


Q ss_pred             -----------CcchHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHh
Q 020838          199 -----------VFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGA  267 (320)
Q Consensus       199 -----------~~~~~v~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlpv~lG~k~a~~la~~ll~~~y~~~il~g~  267 (320)
                                 ..+..++++.+..++++.+++++||+||+||||+.|+||+|+++|+|++.+++...+.++.+..+..+.
T Consensus       166 ~~~~~~~a~~g~~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~kTlpV~~G~~~a~~i~~~~~~~~~~~~~~~~~  245 (331)
T PRK12392        166 ITFLSANALFSDIRPEVVWLAGLNFFMAIALIIMNDFKSVEGDKEGGLKSLTVMIGAKNTFLVSFIIIDLVFAVFAWLAW  245 (331)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcccchhhHHHcCCeeeEeEEcHhhHHHHHHHHHHHHHHHHHHHHH
Confidence                       123344556667778999999999999999999999999999999999999999888888888888888


Q ss_pred             hCcchhHHHHHHHHHHHHHHHhhcccccc
Q 020838          268 TSPFAWSKLITVYFSFTLDHISCCPLNFI  296 (320)
Q Consensus       268 ~~~~~~~~~~~~~~h~vla~~L~~~~~~V  296 (320)
                      .+..++   .....-++++..+++|.+..
T Consensus       246 ~~~~~~---~~~~~~~~~~~~~~~q~~l~  271 (331)
T PRK12392        246 SWGFTV---LMYFILVGLVLNIVIQIQLY  271 (331)
T ss_pred             HhcccH---HHHHHHHHHHHHHHHHHHHH
Confidence            777665   44444555555666665543

>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=99.89  E-value=6.3e-21  Score=183.60  Aligned_cols=223  Identities=14%  Similarity=0.064  Sum_probs=148.1

Q ss_pred             hHHHHHHHhhhhh---ccchhHHhHHHHHHHHHHhhcccC---CCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhccc
Q 020838           83 SVINALDAFYRFS---RPHTVIGTALSIVSVALLAVEKVS---DISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK  156 (320)
Q Consensus        83 ~~~~~l~a~~kfs---RPhTiigt~l~~l~g~llA~~~~~---~~~~~~~~~~L~~lva~l~~n~~i~giNd~fD~EIDk  156 (320)
                      .+.+.++.|+|++   ||++.....++++.|+++|.+...   ..+   +..++..+++++++++.+|.+|||+|+|+|+
T Consensus        25 ~~~~~~~~y~~L~R~~kP~~~~l~~~p~~~G~~lA~~~~~~~~~~~---~~~~~l~~l~~~l~~~a~~~~Nd~~Dr~iD~  101 (314)
T PRK12878         25 RLPPWLRPYAQLARWDRPIGWWLLLWPCWWSAALAAGAAADLGLLL---LWHLFLFFVGAIAMRGAGCTYNDIVDRDIDA  101 (314)
T ss_pred             hcchhHHHHHHHHccccchhhHHHHHHHHHHHHHhcccccCCCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            3556778899999   999999999999999998844211   222   2234556778888999999999999999997


Q ss_pred             ---------cccccchhhHHHHHHHHHHHHHHHH----H-----H------HHHHHH--HH------HHhcCCC------
Q 020838          157 ---------LPLLRWKRFAVAAAMCILAVRAVVV----Q-----L------AFYLHM--QT------HVYRRPA------  198 (320)
Q Consensus       157 ---------iP~~RlKr~~~la~~~Il~v~a~iv----~-----L------g~~~h~--~~------~vlg~~~------  198 (320)
                               +|.+|++.+.++....++.+.+..+    +     +      ..+.|.  ..      .+.|.+.      
T Consensus       102 ~~~Rt~~RPl~sG~is~~~a~~~~~~~~~~g~~l~~~~~~~~~~l~~~~~~~~~~Y~~~KR~t~~~~~~~Gl~~~~~~l~  181 (314)
T PRK12878        102 KVARTRSRPLPSGQVSRKQAKVFMVLQALVGLAVLLQFNWFAIALGIASLAIVAAYPFMKRITWWPQFFLGLAFSWGALM  181 (314)
T ss_pred             CCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence                     9999999887655543332222111    0     0      111221  00      0011000      


Q ss_pred             -------CcchHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHhhCcc
Q 020838          199 -------VFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGATSPF  271 (320)
Q Consensus       199 -------~~~~~v~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlpv~lG~k~a~~la~~ll~~~y~~~il~g~~~~~  271 (320)
                             ..+...+.+....++|+.+.+.+++++|+|+||+.|++|+|+++|++++.++..... +..+...+++.....
T Consensus       182 g~~a~~g~~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~~~~-~~~~~~~l~~~~~~~  260 (314)
T PRK12878        182 GWAAHFGSLSLAAVLLYAGSIAWTIGYDTIYAHQDKEDDALIGVKSTARLFGDHTKTWLVLFYG-LAVLLMGLAFWLAGV  260 (314)
T ss_pred             HHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHcCCcccchHhchhhHHHHHHHHH-HHHHHHHHHHHHhcC
Confidence                   122233445555778999999999999999999999999999999999998885444 444444445544444


Q ss_pred             hhHHHHHHHHHHHHHHHhhccccccCCCCc--h--HHHHHHHHHH
Q 020838          272 AWSKLITVYFSFTLDHISCCPLNFIPLNDS--F--FCLYNLRAVY  312 (320)
Q Consensus       272 ~~~~~~~~~~h~vla~~L~~~~~~Vd~~~~--~--~~~w~lf~~~  312 (320)
                      +|   .+.++-.++...+.+|+..+|++|+  .  +|..|.+|.-
T Consensus       261 ~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~F~~n~~~~~  302 (314)
T PRK12878        261 PL---LALLGLLAAAAHLAWQIARLDIDDPDQCLRLFKSNRDAGL  302 (314)
T ss_pred             cH---HHHHHHHHHHHHHHHHHHHcccCChHHHHHHHHHhHHHHH
Confidence            44   4445555566678899999886653  2  3555665553

>PLN00012 chlorophyll synthetase; Provisional

Probab=99.88  E-value=2.6e-21  Score=190.57  Aligned_cols=178  Identities=16%  Similarity=0.254  Sum_probs=119.4

Q ss_pred             HHHHHHHhhhhhccchhHHhHHHHHHHHHHhhcccCCCChHH-HHHHHHHHHHHHHHHHHHhHhhhhhhhhccc------
Q 020838           84 VINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLF-FTGVLEAIAAALMMNIYIVGLNQLSDIEIDK------  156 (320)
Q Consensus        84 ~~~~l~a~~kfsRPhTiigt~l~~l~g~llA~~~~~~~~~~~-~~~~L~~lva~l~~n~~i~giNd~fD~EIDk------  156 (320)
                      -++.++.+++.+||+|++...+++++|+... + ..++.+.. ...++.++++..++.+++|.+|||+|+|+|+      
T Consensus        81 ~~~~~k~~l~L~RP~t~~~~~~~v~~G~~~~-g-~~~~~~~~~~~~ll~~ll~~~L~~~~an~iNDy~D~~iD~~~~~~R  158 (375)
T PLN00012         81 ETDIWKIRLQLTKPVTWPPLVWGVLCGAAAS-G-NFHWTLEDVAKSIVCMLMSGPFLTGYTQTINDWYDREIDAINEPYR  158 (375)
T ss_pred             chHHHHHHHHHhCHHHHHHHHHHHHHHHHHc-C-CCCchhhhHHHHHHHHHHHHHHHHHHHHHHHCeecHhhhccCCCCC
Confidence            4566778999999999999999999998742 2 11222111 1223556677777889999999999999999      


Q ss_pred             -cccccchhhHHHHHHHHHHH----HHHHH------------HHH------HHHHHH-HHHhcC-C--------------
Q 020838          157 -LPLLRWKRFAVAAAMCILAV----RAVVV------------QLA------FYLHMQ-THVYRR-P--------------  197 (320)
Q Consensus       157 -iP~~RlKr~~~la~~~Il~v----~a~iv------------~Lg------~~~h~~-~~vlg~-~--------------  197 (320)
                       +|+++++++.++....++..    .++.+            .++      .+.|.. ...+++ +              
T Consensus       159 pi~sG~Is~~~al~~~~~l~~~~l~l~~~L~~~~~~~~~~~~~l~l~gi~l~~~YS~pPl~lKr~~~~G~v~lG~~~~~l  238 (375)
T PLN00012        159 PIPSGAISENEVITQIWVLLLGGLGLAYTLDVWAGHDFPIVFYLALGGSLLSYIYSAPPLKLKQNGWIGNYALGASYISL  238 (375)
T ss_pred             CcCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHhhhhcCCchhhhHhccHhHHHHHHHHHHH
Confidence             89999988865442211111    01110            011      112210 000111 1              


Q ss_pred             ---------CCcchHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCccchhhhChHHHHHHHHHHHHHHHHHHH
Q 020838          198 ---------AVFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAI  263 (320)
Q Consensus       198 ---------~~~~~~v~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlpv~lG~k~a~~la~~ll~~~y~~~i  263 (320)
                               ..++...+++..++++++.+++++||++|+||||+.|++|+|+++|+|++.+++..++.+.++..+
T Consensus       239 p~~~g~a~~g~~s~~~illal~~~l~~lai~ivnd~~Die~Dr~aG~~TLpV~~G~~~a~~l~~~~l~l~~l~~~  313 (375)
T PLN00012        239 PWWAGQALFGTLTPDVVVLTLLYSIAGLGIAIVNDFKSIEGDRALGLQSLPVAFGVETAKWICVGSIDITQLSVA  313 (375)
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHcCCcccceeechHHHHHHHHHHHHHHHHHHH
Confidence                     112334445566677899999999999999999999999999999999999999877777765443

>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed

Probab=99.88  E-value=4.8e-21  Score=181.19  Aligned_cols=204  Identities=14%  Similarity=0.133  Sum_probs=135.6

Q ss_pred             HHHHhhhhhccchhHHhHH---HHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhccc-------
Q 020838           87 ALDAFYRFSRPHTVIGTAL---SIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK-------  156 (320)
Q Consensus        87 ~l~a~~kfsRPhTiigt~l---~~l~g~llA~~~~~~~~~~~~~~~L~~lva~l~~n~~i~giNd~fD~EIDk-------  156 (320)
                      .+++|+|++|||+..+..+   +++.|.++|.+...  +   +..++.++++..++.+++|.+|||+|+|+|+       
T Consensus         4 ~~~~y~~L~R~~kp~~~~l~~~p~~~g~~la~~~~~--~---~~~~~l~~~g~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~   78 (282)
T PRK12848          4 RLLAYARLMRLDKPIGTLLLLWPTLWALWLAADGIP--D---LWVLVVFVLGVFLMRAAGCVINDYADRDFDGHVKRTKN   78 (282)
T ss_pred             hHHHHHHHHCccchHHHHHHHHHHHHHHHHHcCCCC--C---HHHHHHHHHHHHHHHHHHHHHHhhHHhccCCCCCCCCC
Confidence            4678899998776665554   45666666633222  2   1123345566677888899999999999997       


Q ss_pred             --cccccchhhHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHhcCC----------------------
Q 020838          157 --LPLLRWKRFAVAAAMCILAVRAVVV---------------QLAFYLHMQTHVYRRP----------------------  197 (320)
Q Consensus       157 --iP~~RlKr~~~la~~~Il~v~a~iv---------------~Lg~~~h~~~~vlg~~----------------------  197 (320)
                        +|+||++.+.++....++...+.++               .+..+.|  +..++..                      
T Consensus        79 RPl~sG~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~~~~~~~~~~Y--~~~Kr~~~~~~~~~g~~~g~~~~~g~~a~  156 (282)
T PRK12848         79 RPLASGAVSEKEALALFVVLVLVAFLLVLTLNTLTIWLSVAALALAWIY--PFMKRYTHLPQVVLGAAFGWGIPMAFAAV  156 (282)
T ss_pred             CCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH--HhHHhcCcccHHHHHHHHHHHHHHHHHHH
Confidence              9999999887655543332221111               0011222  1111110                      


Q ss_pred             -CCcchHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHH
Q 020838          198 -AVFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGATSPFAWSKL  276 (320)
Q Consensus       198 -~~~~~~v~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlpv~lG~k~a~~la~~ll~~~y~~~il~g~~~~~~~~~~  276 (320)
                       ...+...+++....++|+.+.+..++++|+|+||+.|++|+|+++|.|++.+++ .++.+......+++.....++   
T Consensus       157 ~~~~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---  232 (282)
T PRK12848        157 QGSVPLEAWLLFLANILWTVAYDTQYAMVDRDDDLKIGIKSTAILFGRYDKLIIG-LLQLATLALLAWAGWLLGLGW---  232 (282)
T ss_pred             hCCCcHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHcCCccccHHhccccHHHHH-HHHHHHHHHHHHHHHHhcCcH---
Confidence             012333445555567888999999999999999999999999999999998877 455555555555666554444   


Q ss_pred             HHHHHHHHHHHHhhccccccCCCCc
Q 020838          277 ITVYFSFTLDHISCCPLNFIPLNDS  301 (320)
Q Consensus       277 ~~~~~h~vla~~L~~~~~~Vd~~~~  301 (320)
                      .+.++-.+.+..+.++++.+|.+|+
T Consensus       233 ~y~~~~~~~~~~~~~~~~~~~~~~~  257 (282)
T PRK12848        233 AYYWGLLVAAALFVYQQKLIRDRER  257 (282)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCH
Confidence            5556666778888999999988764

>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed

Probab=99.88  E-value=2.6e-21  Score=185.86  Aligned_cols=177  Identities=17%  Similarity=0.157  Sum_probs=119.8

Q ss_pred             HHHHHhhhhhccchhHHhHHHHHHHHHHhhcccCCCChHHH-HHHHHHHHHHHHHHHHHhHhhhhhhhhccc-------c
Q 020838           86 NALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFF-TGVLEAIAAALMMNIYIVGLNQLSDIEIDK-------L  157 (320)
Q Consensus        86 ~~l~a~~kfsRPhTiigt~l~~l~g~llA~~~~~~~~~~~~-~~~L~~lva~l~~n~~i~giNd~fD~EIDk-------i  157 (320)
                      ++++++++++||+|+..+.++++.|++.+. . .++..... ..++.++++..++++++|.+|||+|+|+|+       +
T Consensus        25 ~~~~~~~~l~RP~~~~~~~~~~~~g~~~~~-~-~~~~~~~~~~~~l~~~l~~~l~~~~~~~~Nd~~D~~~D~~~~~~Rpl  102 (314)
T PRK07566         25 SIWKARLQLMKPITWFPPMWAFLCGAVSSG-A-FGWTLENVLKLLAGMLLAGPLLCGTSQTLNDYFDREVDAINEPYRPI  102 (314)
T ss_pred             hHHHHHHHHhCCcchHHHHHHHHHHHHHcC-C-CCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhhccCccccCCCCCCC
Confidence            456789999999999999999888876542 1 12322111 122345566677888899999999999999       8


Q ss_pred             ccccchhhHHHHHHHHHHHHHHHH---------HHHH----HHHHHH---HHhcC-CC----------------------
Q 020838          158 PLLRWKRFAVAAAMCILAVRAVVV---------QLAF----YLHMQT---HVYRR-PA----------------------  198 (320)
Q Consensus       158 P~~RlKr~~~la~~~Il~v~a~iv---------~Lg~----~~h~~~---~vlg~-~~----------------------  198 (320)
                      |+++++++.++....++.+.+.++         .+++    ..+.++   ..+++ +.                      
T Consensus       103 ~sG~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~l~~~~~~~~Yt~gP~~lK~~~~~g~i~vg~~~g~~~~~~g~~~~  182 (314)
T PRK07566        103 PSGAISLRWVLYLIAVLTVLGLAVAYLLGPWVFLAALLGLFLAWIYSAPPLRLKQNGWLGNYAVGLSYEGLPWWAGAAAF  182 (314)
T ss_pred             CCceeCHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHhcCCccccccccchhhHHHHHHHHHHHHHHHHHHh
Confidence            999998887655543332222111         0111    011111   01111 10                      


Q ss_pred             ---CcchHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCccchhhhChHHHHHHHHHHHHHHHHHHHH
Q 020838          199 ---VFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAIL  264 (320)
Q Consensus       199 ---~~~~~v~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlpv~lG~k~a~~la~~ll~~~y~~~il  264 (320)
                         ..+...+++.....+++.+++++||++|+|+||+.|+||+|+++|+|++.+++..++.++|+..+.
T Consensus       183 ~~~~~~~~~~l~~~~~~l~~~~~~~~~d~~D~e~D~~aG~~Tlpv~~G~~~a~~l~~~l~~~~~~~~~~  251 (314)
T PRK07566        183 GAGLPSWPIVILALLYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVVFGEKNAARIACVVIDLFQLAVIA  251 (314)
T ss_pred             ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHcCCcccceeEcHHHHHHHHHHHHHHHHHHHHH
Confidence               122333444555567788899999999999999999999999999999999999888888887643

>TIGR02056 ChlG chlorophyll synthase, ChlG

Probab=99.88  E-value=8.3e-21  Score=181.82  Aligned_cols=180  Identities=18%  Similarity=0.261  Sum_probs=122.1

Q ss_pred             HHHHHHHhhhhhccchhHHhHHHHHHHHHHhhcccCCCChH-HHHHHHHHHHHHHHHHHHHhHhhhhhhhhccc------
Q 020838           84 VINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPL-FFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK------  156 (320)
Q Consensus        84 ~~~~l~a~~kfsRPhTiigt~l~~l~g~llA~~~~~~~~~~-~~~~~L~~lva~l~~n~~i~giNd~fD~EIDk------  156 (320)
                      .++.++.++|++||+|+....++++.|+..+ + ..++... ....++.+++++.++++..|.+|||+|+|+|+      
T Consensus        12 ~~~~~~~~~~l~RP~~~~~~~~~~~~G~~~~-~-~~~~~~~~~~~~ll~~ll~~~l~~~~~n~~NDy~D~d~D~~~~~~R   89 (306)
T TIGR02056        12 ETNIWKIRLQLMKPITWIPLIWGVVCGAAAS-G-NFHWSLEDVAKAALCMLLSGPCLTGYTQTINDFYDRDIDAINEPYR   89 (306)
T ss_pred             chhHHHHHHHHcChHhhHHHHHHHHHHHHHc-C-CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhccCCCCC
Confidence            4456778999999999999999999998753 1 1122211 11123445677788899999999999999999      


Q ss_pred             -cccccchhhHHHHHHHHHHHHH----H------------HHHHHH------HHHHH-HHHhcC-C--------------
Q 020838          157 -LPLLRWKRFAVAAAMCILAVRA----V------------VVQLAF------YLHMQ-THVYRR-P--------------  197 (320)
Q Consensus       157 -iP~~RlKr~~~la~~~Il~v~a----~------------iv~Lg~------~~h~~-~~vlg~-~--------------  197 (320)
                       +|.+|++.+.++....++...+    +            ...+++      +.|.. ..-+++ +              
T Consensus        90 pi~~G~is~~~a~~~~~~l~~~~~~lg~~l~~~~~~~~~~~~~l~~~~~~~~~~Yt~gP~~lk~~g~~G~i~vg~~~~~~  169 (306)
T TIGR02056        90 PIPSGAISEPEVITQIVLLFIAGIAIAFILDLWAGHEFPNVFVLALFGSFIAFIYSAPPLKLKQNGWLGNFALGASYIAL  169 (306)
T ss_pred             CCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHcCChhhhhhcccHHHHHHHHHHHHH
Confidence             8899998886554332221111    0            011111      12210 001111 1              


Q ss_pred             ---------CCcchHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHH
Q 020838          198 ---------AVFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILV  265 (320)
Q Consensus       198 ---------~~~~~~v~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlpv~lG~k~a~~la~~ll~~~y~~~il~  265 (320)
                               ..++...+++...+++++.++++.||++|+|+||+.|+||+|+++|+|++.+++..++..+|+..+..
T Consensus       170 ~~~~~~a~~g~~~~~~~l~~~~~~l~~~~i~~~n~~~D~e~D~~~G~~Tlpv~lG~~~a~~~~~~l~~~~~~~~~~~  246 (306)
T TIGR02056       170 PWWAGHALFGELNPDIAVLTLIYSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGIETAAWICVGAIDIFQGLIAAY  246 (306)
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHccChHHHHHcCCcCcchhcChHHHHHHHHHHHHHHHHHHHHH
Confidence                     11223344555666789999999999999999999999999999999999999998888877766543

This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).

>PRK12873 ubiA prenyltransferase; Reviewed

Probab=99.87  E-value=1.5e-20  Score=179.91  Aligned_cols=214  Identities=14%  Similarity=0.088  Sum_probs=147.8

Q ss_pred             HHHHhhhhhccchhHHhHHHHHH---HHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhccc-------
Q 020838           87 ALDAFYRFSRPHTVIGTALSIVS---VALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK-------  156 (320)
Q Consensus        87 ~l~a~~kfsRPhTiigt~l~~l~---g~llA~~~~~~~~~~~~~~~L~~lva~l~~n~~i~giNd~fD~EIDk-------  156 (320)
                      .++.|+|++||+...++.+-.+.   |.+++...  ..+   +..++..++...++.++++++||+.|+|||+       
T Consensus         6 ~~~~y~~L~R~~Kp~~~~ll~~p~~~g~~la~~~--~~~---~~~~~~~~~g~~l~~~a~~~~Nd~~D~~iD~~~~RT~~   80 (294)
T PRK12873          6 KLSPWFELLRWNKPTGRLILLIPAGWSLWLTPSA--PPS---LLLLLLIILGGLAVSGAGCIANDLWDRRIDRKVERTKN   80 (294)
T ss_pred             hHHHHHHHhCccccchHHHHHHHHHHHHHHccCC--CCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcCCC
Confidence            46688999999988877665433   44443221  112   2223455667777888999999999999998       


Q ss_pred             --cccccchhhHHHHHHHHHHHHHHHH--H-------HHH----------HHH--HH------HHHhcCCC---------
Q 020838          157 --LPLLRWKRFAVAAAMCILAVRAVVV--Q-------LAF----------YLH--MQ------THVYRRPA---------  198 (320)
Q Consensus       157 --iP~~RlKr~~~la~~~Il~v~a~iv--~-------Lg~----------~~h--~~------~~vlg~~~---------  198 (320)
                        +|+||+++..++.+..++.+.++.+  .       +++          +.|  +.      +.+.|.+.         
T Consensus        81 RPl~sG~is~~~A~~~~~~~~~~~~~~~~~l~~~~n~l~~~l~~~~~~~~~~Y~~~KR~t~~~~~vlg~~~a~~~l~gw~  160 (294)
T PRK12873         81 RPLARGKISLKTAYSLLIVLLLLSLFVVLSLPQPSRNLCLSLAFLALPPILIYPSAKRWFAYPQAILALCWGFAVLIPWA  160 (294)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHhHHHHHHH
Confidence              9999999887666553332222111  0       111          111  11      01111110         


Q ss_pred             ----Ccch--HHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHhhCcch
Q 020838          199 ----VFSK--PLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGATSPFA  272 (320)
Q Consensus       199 ----~~~~--~v~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlpv~lG~k~a~~la~~ll~~~y~~~il~g~~~~~~  272 (320)
                          ..+.  ..+++.+.+++|+.+.++++++||.|+|++.|++|+|+++|+ ++..++..++.++.+....+|...+.+
T Consensus       161 Av~g~~~~~~~~l~l~~~~~~W~~~~d~iyA~qD~edD~~~Gv~slpv~~G~-~~~~~~~~~~~~~~~ll~~~g~~~~l~  239 (294)
T PRK12873        161 AAEGSLNGGWPLLFCWLATLLWTFGFDTVYAMADRRDDAKIGLNSSALSLGS-NALKTVQICYFLTSIFLALAAFIAQVG  239 (294)
T ss_pred             HHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHcCCcccchhcCh-hhHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence                1121  233444677899999999999999999999999999999996 677778889999988888899887776


Q ss_pred             hHHHHHHHHHHHHHHHhhccccccCCCCch-HHHHHHH
Q 020838          273 WSKLITVYFSFTLDHISCCPLNFIPLNDSF-FCLYNLR  309 (320)
Q Consensus       273 ~~~~~~~~~h~vla~~L~~~~~~Vd~~~~~-~~~w~lf  309 (320)
                      +   ++.++.++.+..+.|||+.+|++|.. -.-|+.|
T Consensus       240 ~---~y~~~~~~~~~~l~~~~~~~~~~~~~~~~c~~~F  274 (294)
T PRK12873        240 F---IFWPFWLIASIGMQRDILKLFPEKQSIKTIGNHF  274 (294)
T ss_pred             H---HHHHHHHHHHHHHHHHHHHhCcCcccHHHHHHHH
Confidence            6   77788888899999999999998853 3445554

>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial

Probab=99.87  E-value=3.5e-20  Score=175.37  Aligned_cols=215  Identities=14%  Similarity=0.106  Sum_probs=135.8

Q ss_pred             HhhhhhccchhHHhHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhccc---------cccc
Q 020838           90 AFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK---------LPLL  160 (320)
Q Consensus        90 a~~kfsRPhTiigt~l~~l~g~llA~~~~~~~~~~~~~~~L~~lva~l~~n~~i~giNd~fD~EIDk---------iP~~  160 (320)
                      .+.|+.||.......++.+.|+.+|... .+.++  +..++..+++..++++.+|.+|||+|+|+|+         +|+|
T Consensus         6 ~l~R~~kp~~~~l~~~~~~~g~~la~~~-~~~~~--~~~~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG   82 (281)
T TIGR01474         6 KLMRADKPIGTLLLLWPCLWSLLLAAQA-GGIPP--LYLLGLFTVGAILMRGAGCVINDIWDRDFDPQVERTKSRPLASG   82 (281)
T ss_pred             HHHccccHHHHHHHHHHHHHHHHHHhcc-cCCCc--HHHHHHHHHHHHHHHHHHHHHHhHhhhcccccCCcccCCCCCCC
Confidence            4566666666666677777777776331 12211  1223445666677888899999999999997         8999


Q ss_pred             cchhhHHHHHHHHHHHHHHHH----H--------HHH-HHHHHHHHhcC----C--------------------CCcchH
Q 020838          161 RWKRFAVAAAMCILAVRAVVV----Q--------LAF-YLHMQTHVYRR----P--------------------AVFSKP  203 (320)
Q Consensus       161 RlKr~~~la~~~Il~v~a~iv----~--------Lg~-~~h~~~~vlg~----~--------------------~~~~~~  203 (320)
                      |++.+.++....++...+..+    +        .+. ....++. .++    +                    ...+..
T Consensus        83 ~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~Y~~-~Kr~~~~~~~~~g~~~~~~~~~g~~a~~g~~~~~  161 (281)
T TIGR01474        83 AVSVRQAILFLLVQLLVALGVLLQLNPLTILLGVASLALVATYPF-MKRITYWPQLVLGLAFGWGALMGWAAVTGDLSTA  161 (281)
T ss_pred             CcCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhch-hcccccccHHHHHHHHHHHHHHHHHHHcCCCcHH
Confidence            998887655443332221111    0        000 0111111 111    0                    012334


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHHH
Q 020838          204 LIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGATSPFAWSKLITVYFSF  283 (320)
Q Consensus       204 v~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlpv~lG~k~a~~la~~ll~~~y~~~il~g~~~~~~~~~~~~~~~h~  283 (320)
                      .+++....++|+.+.++++++||+|+||+.|++|+|+++|+|++.+ ...++.++.....+.+.....++   .+.++-.
T Consensus       162 ~~ll~~~~~lw~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~y~~~~~  237 (281)
T TIGR01474       162 AWVLYLANILWTLGYDTIYAMQDKEDDIKIGVKSTALRFGDNTKPW-LGGLYALMILLLALAGLIAGLGP---VYYLGLA  237 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCcccHHhhhhhHHH-HHHHHHHHHHHHHHHHHHhCCcH---HHHHHHH
Confidence            4445566778999999999999999999999999999999988644 44455555455555565555454   5556777


Q ss_pred             HHHHHhhccccccCCCCc--h--HHHHHHHHHH
Q 020838          284 TLDHISCCPLNFIPLNDS--F--FCLYNLRAVY  312 (320)
Q Consensus       284 vla~~L~~~~~~Vd~~~~--~--~~~w~lf~~~  312 (320)
                      +.+..+.+++..+|.+|+  +  +|-++.+|.-
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~~~  270 (281)
T TIGR01474       238 AAALLLIRQIATLDIRDPENCLKLFKANNYVGL  270 (281)
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHhhHHHH
Confidence            778888899888877643  2  2444555543

A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.

>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed

Probab=99.86  E-value=3e-20  Score=174.75  Aligned_cols=163  Identities=22%  Similarity=0.299  Sum_probs=105.8

Q ss_pred             HHHhhhhhccchhHHhHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhccc-------cccc
Q 020838           88 LDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK-------LPLL  160 (320)
Q Consensus        88 l~a~~kfsRPhTiigt~l~~l~g~llA~~~~~~~~~~~~~~~L~~lva~l~~n~~i~giNd~fD~EIDk-------iP~~  160 (320)
                      +++++|++|||++....++.+.|++++.+..++     +..++..+++..+++++++.+|||+|+|+|+       +|++
T Consensus         3 l~~~~~l~Rp~~~~~~~~~~~~G~~la~~~~~~-----~~~~~l~~~~~~~~~~a~~~~Nd~~D~~~D~~n~~~Rpl~sG   77 (277)
T PRK12883          3 LKAFIEITRPHNCILAGIVGILGSLVALGGIPP-----IKTLILIFLVVYLGCSGGNTINDYFDYEIDKINRPNRPLPRG   77 (277)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCCc-----HHHHHHHHHHHHHHHHHHhHHHhhhhHhccccCCCCCCCCCC
Confidence            467899999999999999999998887443221     1122334556666777889999999999998       8999


Q ss_pred             cchhhHHHHHHHHHHHHHHHH----HH-----HH----HHHHHHHHhcC-CCCcch---------HH------------H
Q 020838          161 RWKRFAVAAAMCILAVRAVVV----QL-----AF----YLHMQTHVYRR-PAVFSK---------PL------------I  205 (320)
Q Consensus       161 RlKr~~~la~~~Il~v~a~iv----~L-----g~----~~h~~~~vlg~-~~~~~~---------~v------------~  205 (320)
                      |++++.++....++...+..+    +.     ++    ....++..+++ +..++.         ++            .
T Consensus        78 ~is~~~a~~~~~~l~~~g~~l~~~~~~~~~~~~~~~~~~~~~Y~~~~k~~~~lg~~~vg~~~g~~~~~g~~a~~~~~~~~  157 (277)
T PRK12883         78 AMSRKAALYYSLLLFAVGLALAYLINIEAFLFALGAYVLMFLYAWKLKPLPFIGNVVVALLTGATPIYGAIAVGRIGLAG  157 (277)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhhHHHHHHHHHHHHHHHHHhccccHHH
Confidence            998887655443322222111    10     00    01111111111 111111         00            0


Q ss_pred             HHHHHHHHHHHHHHHHhcCCChhhhhhcCCccchhhhChHHHHHHHHHHH
Q 020838          206 FATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLL  255 (320)
Q Consensus       206 ~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlpv~lG~k~a~~la~~ll  255 (320)
                      ++..+.+++..++++.||++|+||||+.|++|+|+++|+|++.+++....
T Consensus       158 ~~~~~~fl~~~~~~~~~~~~D~e~D~~~G~~Tlpv~~G~~~a~~~~~~~~  207 (277)
T PRK12883        158 YLAICAFLVNVAREIMKDIEDIEGDKAKGAKTLPIIIGKKRAAYIGAIFG  207 (277)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhccHHHcCCcCcChHhcHHHHHHHHHHHH
Confidence            12223455667899999999999999999999999999999999776554

>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated

Probab=99.86  E-value=3.6e-20  Score=175.15  Aligned_cols=178  Identities=20%  Similarity=0.210  Sum_probs=127.3

Q ss_pred             HHHhhhhhccchhHHhHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhh--hccc---------
Q 020838           88 LDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDI--EIDK---------  156 (320)
Q Consensus        88 l~a~~kfsRPhTiigt~l~~l~g~llA~~~~~~~~~~~~~~~L~~lva~l~~n~~i~giNd~fD~--EIDk---------  156 (320)
                      +++++|.+||+|+..+.++++.|..+|... ..++   +...+..++++++++.++|.+|||+|+  ++|+         
T Consensus         3 ~~~~~~~~Rp~~~~~~~~p~l~G~~~a~~~-~~~~---~~~~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~~~~~~r~   78 (293)
T PRK06080          3 FKAWLELARPKTLPAAFAPVLVGTALAYWL-GSFH---PLLALLALLAALLLQIATNLANDYGDYVKGTDTEDRVGPLRA   78 (293)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHc-CCcc---HHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCcccccCCccc
Confidence            467899999999999999999999887432 2344   223445677888899999999999999  5885         


Q ss_pred             cccccchhhHHHHHHHHHHHH----HHHH---------HHHHH----HHHHHH---HhcC--------------------
Q 020838          157 LPLLRWKRFAVAAAMCILAVR----AVVV---------QLAFY----LHMQTH---VYRR--------------------  196 (320)
Q Consensus       157 iP~~RlKr~~~la~~~Il~v~----a~iv---------~Lg~~----~h~~~~---vlg~--------------------  196 (320)
                      +|+++++++.++....++...    +..+         .++..    .+.++.   -++.                    
T Consensus        79 l~~G~is~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~Ys~~p~~~~~~glge~~~~~~~G~~~~~~~  158 (293)
T PRK06080         79 IGRGGISPKQVKRAAIAFFGLAALLGLYLVAVSGWWLLLLGLLCIAAAILYTGGPKPYGYTGLGELFVGVFFGLVIVLGT  158 (293)
T ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhcCCCCccCCCCcHHHHHHHHHHHHHHHHH
Confidence            889999888755433222211    1111         11110    011110   0000                    


Q ss_pred             ----CCCcchHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHhhC
Q 020838          197 ----PAVFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGATS  269 (320)
Q Consensus       197 ----~~~~~~~v~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlpv~lG~k~a~~la~~ll~~~y~~~il~g~~~  269 (320)
                          ....+..++++.....+++.++.+.||++|+||||+.|+||+|+++|+|++.++...+..++|+..+...+..
T Consensus       159 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~n~~~D~~~D~~~G~~Tl~v~lG~~~a~~~~~~l~~~~~~~~~~~~~~~  235 (293)
T PRK06080        159 YYLQAGTVDSAVFLPALPCGLLIGAVLLANNIRDIETDRENGKNTLAVRLGDKNARRLHAALLALAYLCIVLLALLG  235 (293)
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHcCCeeEEeeECcHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence                0113344555666677899999999999999999999999999999999999999999999999888776654

>PRK12875 ubiA prenyltransferase; Reviewed

Probab=99.86  E-value=1.6e-20  Score=178.62  Aligned_cols=179  Identities=26%  Similarity=0.327  Sum_probs=110.5

Q ss_pred             HHHHHHHhhhhhccchhHHhHHHHHHHHHHhhcccCC-CChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhcccc-ccc-
Q 020838           84 VINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSD-ISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDKL-PLL-  160 (320)
Q Consensus        84 ~~~~l~a~~kfsRPhTiigt~l~~l~g~llA~~~~~~-~~~~~~~~~L~~lva~l~~n~~i~giNd~fD~EIDki-P~~-  160 (320)
                      ..+.++.+++.+||+|+..+..+++.|+.+|.+...+ +++..+. ++.  ...+..|.+++++|||+|+|+|+. |+- 
T Consensus         4 ~~~~~~~l~~l~RP~~~~~~~~p~l~G~~lA~~~~~~~~~~~~~~-ll~--~~~i~~Nl~~y~iND~~D~D~Dr~~prk~   80 (282)
T PRK12875          4 LGDRLRYLLVLSRPRFWLYLAGPVVVGVAYAADSVADLFSPAAVA-LFA--YFLFPANVFLYGVNDVFDADTDELNPKKD   80 (282)
T ss_pred             hHHHHHHHHHHhCccchHHHHHHHHHHHHHHhccCcccccHHHHH-HHH--HHHHHHHHHHhcchhhhhhhccccCCCcc
Confidence            3456778899999999999999999999998654322 3432221 121  112557888999999999999992 221 


Q ss_pred             --cc-----hhhHHHHHH--HHHHHH--------HHHHHHHH--HHHHHH---HHhc-CC--------------------
Q 020838          161 --RW-----KRFAVAAAM--CILAVR--------AVVVQLAF--YLHMQT---HVYR-RP--------------------  197 (320)
Q Consensus       161 --Rl-----Kr~~~la~~--~Il~v~--------a~iv~Lg~--~~h~~~---~vlg-~~--------------------  197 (320)
                        |.     |+....+..  +.+.+.        +..+.++.  ....++   .-++ .|                    
T Consensus        81 ~~r~~~~s~~~~~~~~~~l~~~l~l~l~~~~~~~~~~~ll~~i~~~~~YS~pP~rlk~~p~~~~~~~g~~~~~~~~~y~~  160 (282)
T PRK12875         81 REREVRYRGDRRVLVAVALSGALALAFLLVLPPAAWPALLAFLVLSVEYSAPPLRFKTTPVLDSLSNGLYILPGVAAYAL  160 (282)
T ss_pred             CCCCccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCccchhccHHHHHHHHHHHHHHHHHHHH
Confidence              11     111100110  000000        00010111  000000   0000 01                    


Q ss_pred             --CCcchHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHh
Q 020838          198 --AVFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGA  267 (320)
Q Consensus       198 --~~~~~~v~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlpv~lG~k~a~~la~~ll~~~y~~~il~g~  267 (320)
                        ...+...  +.....+|+.+++++||+||+|+||+.|+||+|+++|+|++.+++..++.++-+..+.+|.
T Consensus       161 ~tg~~~~~~--l~~a~~l~~~~~~~in~i~Die~D~~aGi~Tlav~lG~~~a~~~~~~~~~~a~~~~~~~~~  230 (282)
T PRK12875        161 VSGSLPPLL--AVAGGWLWAMGMHTFSAIPDIEPDRAAGIRTTATVLGERRTYAYCAACWLLAAAAFAAVDL  230 (282)
T ss_pred             HcCCCcHHH--HHHHHHHHHHHHHHHHhccCHHHHHHcCCccchhhccHhhHHHHHHHHHHHHHHHHHHHHH
Confidence              0122222  2222358999999999999999999999999999999999999999999888888877663

>PRK12872 ubiA prenyltransferase; Reviewed

Probab=99.85  E-value=3e-20  Score=174.44  Aligned_cols=205  Identities=17%  Similarity=0.157  Sum_probs=121.9

Q ss_pred             HHHHHhhhhhccchhHHhHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhcccc-------c
Q 020838           86 NALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDKL-------P  158 (320)
Q Consensus        86 ~~l~a~~kfsRPhTiigt~l~~l~g~llA~~~~~~~~~~~~~~~L~~lva~l~~n~~i~giNd~fD~EIDki-------P  158 (320)
                      +.+++++|+.|+.|.+.+..+...+.....  ..+..+     ....+++..+.....+.+|||+|+|+|+.       |
T Consensus         2 ~~~~~~~~~~~~~~~~~a~~~~~l~~~~~~--~~~~~~-----~~~~~~~~~~~~~~~~~~N~~~D~~~D~~n~~~R~~~   74 (285)
T PRK12872          2 KLLFAFLKLFRYGNLLIAALGQSLVYMASL--LLGLPI-----SWLLLLITFLIAAAVYIINYLTDLEEDIINKPERVVF   74 (285)
T ss_pred             hHHHHHHHHHHHccHHHHHHHHHHHHHHHH--HHcChh-----HHHHHHHHHHHHHHHHHhhhhcCCchhhcCCCchHHH
Confidence            456789999999999988777665542210  111111     12335555666777788999999999992       2


Q ss_pred             cccchhhHHHHHHHHHHHHHHHH----------------HHHHHHHHHH---HHhcCCC---------------------
Q 020838          159 LLRWKRFAVAAAMCILAVRAVVV----------------QLAFYLHMQT---HVYRRPA---------------------  198 (320)
Q Consensus       159 ~~RlKr~~~la~~~Il~v~a~iv----------------~Lg~~~h~~~---~vlg~~~---------------------  198 (320)
                      +.|..+...+...++....+..+                .+..++|...   ..+..|.                     
T Consensus        75 s~~~~~~~~~~l~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~~~~lk~~p~~~~~~vg~~~g~~~~~~~~~~  154 (285)
T PRK12872         75 SETKAYGLFLLLNVLGLYLGAYLLAVIGGPKFALIFIIPLILGILYSVFFKRRLKRIPLFKNLVVSLLWALSPLILGVYY  154 (285)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhChhHHHHhhhhhHhhHHHHHHHHHHHHHHHHHh
Confidence            22222222211111111111000                0001122110   1111111                     


Q ss_pred             ---CcchHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHhhCcchhHH
Q 020838          199 ---VFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGATSPFAWSK  275 (320)
Q Consensus       199 ---~~~~~v~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlpv~lG~k~a~~la~~ll~~~y~~~il~g~~~~~~~~~  275 (320)
                         .++...+....+++++.++++++||++|+||||+.|++|+|+++|+|++.+++..+..+.++..+.........+  
T Consensus       155 ~~~~~~~~~~~~~~~~fl~~~~~~~~~d~~D~e~D~~~G~~Tlpv~lG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~--  232 (285)
T PRK12872        155 YQLTIFSLLLLYAVFIFLKSFIREIVFDIKDIEGDRKSGLKTLPIVLGKERTLKFLLILNLLFLILLILGVYTGLLPL--  232 (285)
T ss_pred             cccccchHHHHHHHHHHHHHHHHHHHHhcccchhHHHcCCcccchhcchHHHHHHHHHHHHHHHHHHHHHHHHhHhhH--
Confidence               112333445556667788999999999999999999999999999999999999999999998886655433233  


Q ss_pred             HHHHHHHHHHHHHhhccccccCCCC
Q 020838          276 LITVYFSFTLDHISCCPLNFIPLND  300 (320)
Q Consensus       276 ~~~~~~h~vla~~L~~~~~~Vd~~~  300 (320)
                       .....-.+.+..+.+.++..+.+|
T Consensus       233 -~~~~~~~~~~~~~~~~~~~~~~~~  256 (285)
T PRK12872        233 -LLLVLLLLLAYVLYYIIKLFAADD  256 (285)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHhccc
Confidence             233333344556666666554444

>PRK04375 protoheme IX farnesyltransferase; Provisional

Probab=99.84  E-value=1.7e-19  Score=171.84  Aligned_cols=208  Identities=13%  Similarity=0.042  Sum_probs=135.9

Q ss_pred             HHHHHHhhhhhccchhHHhHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhccc--------
Q 020838           85 INALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK--------  156 (320)
Q Consensus        85 ~~~l~a~~kfsRPhTiigt~l~~l~g~llA~~~~~~~~~~~~~~~L~~lva~l~~n~~i~giNd~fD~EIDk--------  156 (320)
                      +..+++++|++||++++...++++.|+++|.+.  ..++   ..++.++++..++.+++|.+|||+|+|+|+        
T Consensus         7 ~~~~~~y~~L~rp~~~~~~~~~~~~G~~la~~~--~~~~---~~~~l~~l~~~l~~aa~~~iNd~~D~~iD~~~~Rt~~R   81 (296)
T PRK04375          7 RATLKDYLALTKPRVISLNLFTALGGMLLAPPG--VPPL---LLLLLTLLGIALVAGAAGALNNYIDRDIDAKMERTKNR   81 (296)
T ss_pred             hhhHHHHHHHhHHHHHHHHHHHHHHHHHHhcCC--CCCH---HHHHHHHHHHHHHHHHHHHHHhHHhhccCCCCCccCCC
Confidence            345889999999999999999999999887432  2232   223445677788899999999999999999        


Q ss_pred             -cccccchhhHHHHHHHHHHHHH------------HHH-HHHH--HHHHHHHHhcC-CC---------------------
Q 020838          157 -LPLLRWKRFAVAAAMCILAVRA------------VVV-QLAF--YLHMQTHVYRR-PA---------------------  198 (320)
Q Consensus       157 -iP~~RlKr~~~la~~~Il~v~a------------~iv-~Lg~--~~h~~~~vlg~-~~---------------------  198 (320)
                       +|+||++++.++....++...+            ..+ .++.  +...++..+++ +.                     
T Consensus        82 pl~sG~is~~~a~~~~~~l~~~g~~l~~~l~~~~~~~l~~~~~~~~~~~Ys~~lKr~~~~~~~v~~~~g~~~~l~g~~a~  161 (296)
T PRK04375         82 PLVTGRISPREALIFGLVLGVLGFLLLGLFVNPLAAWLTLAGIFFYVVVYTLWLKRRTPQNIVIGGAAGAMPPLIGWAAV  161 (296)
T ss_pred             CCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccchhcCCccchHHHHHHHHhHHHHHHHHh
Confidence             8999999887554432221111            111 1111  11122211221 10                     


Q ss_pred             --CcchHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHH
Q 020838          199 --VFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGATSPFAWSKL  276 (320)
Q Consensus       199 --~~~~~v~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlpv~lG~k~a~~la~~ll~~~y~~~il~g~~~~~~~~~~  276 (320)
                        ..+...+++...+++|..+.+..+.++|.|-||+.|++|+|+++|.+++.+++...+.+.....++.......++   
T Consensus       162 ~g~~~~~~~~l~~~~~lw~~~~~~~~~~~d~~D~~~~G~~tlpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  238 (296)
T PRK04375        162 TGSLSWEALILFLIIFLWTPPHFWALAIFRKDDYAAAGIPMLPVVKGIRVTKRQILLYTVLLVAVSLLPVLLGMAGL---  238 (296)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHcCCCccceeeCHHHHHHHHHHHHHHHHHHHHHHHHHhccCH---
Confidence              123334456666777888888777788888899999999999999999998777666655554444444332333   


Q ss_pred             HHHH-HHHHHHHHhhccccccCCCC
Q 020838          277 ITVY-FSFTLDHISCCPLNFIPLND  300 (320)
Q Consensus       277 ~~~~-~h~vla~~L~~~~~~Vd~~~  300 (320)
                      .+.+ +-.+-+.++.++++.++.+|
T Consensus       239 ~y~~~~~~~~~~~l~~~~~~~~~~~  263 (296)
T PRK04375        239 LYLVVALLLGAWFLYYAWRLYRKDD  263 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCcC
Confidence            3333 33344566667788887665

>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase

Probab=99.84  E-value=2.7e-19  Score=168.72  Aligned_cols=203  Identities=14%  Similarity=0.093  Sum_probs=135.4

Q ss_pred             HhhhhhccchhHHhHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhccc---------cccc
Q 020838           90 AFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK---------LPLL  160 (320)
Q Consensus        90 a~~kfsRPhTiigt~l~~l~g~llA~~~~~~~~~~~~~~~L~~lva~l~~n~~i~giNd~fD~EIDk---------iP~~  160 (320)
                      +++|++||+++....++++.|+++|.+.. +.+   +..++..+++.+++++++|.+|||+|+|+|+         +|+|
T Consensus         2 ~~~~l~rp~~~~~~~~~~~~g~~la~~~~-~~~---~~~~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~sG   77 (280)
T TIGR01473         2 DYLQLTKPRIISLLLITAFAGMWLAPGGA-LVN---PPLLLLTLLGTTLAAASANAFNMYIDRDIDKKMKRTRNRPLVTG   77 (280)
T ss_pred             chHHHccHHHHHHHHHHHHHHHHHhCCCC-CCC---HHHHHHHHHHHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCCC
Confidence            68999999999999999999998874321 123   2223445777788899999999999999999         8999


Q ss_pred             cchhhHHHHHHHHHHHHHHH-------------HHHHH--HHHHHHHHhcC-CC-----------------------Ccc
Q 020838          161 RWKRFAVAAAMCILAVRAVV-------------VQLAF--YLHMQTHVYRR-PA-----------------------VFS  201 (320)
Q Consensus       161 RlKr~~~la~~~Il~v~a~i-------------v~Lg~--~~h~~~~vlg~-~~-----------------------~~~  201 (320)
                      |++.+.++....++...+.+             ..++.  +.+.++...++ +.                       ..+
T Consensus        78 ~is~~~a~~~~~~~~~~g~~il~~~~~~~~~~l~~~~~~~~~~~Yt~~lKr~~~~~~~v~~~~g~~~~l~g~~a~~g~~~  157 (280)
T TIGR01473        78 RISPREALAFGLLLGVLGVAILAAFVNPLAALLGLFGIFFYVIVYTIWLKRRTPQNTVIGGFAGAVPPLIGWAAVTGSIS  157 (280)
T ss_pred             CcCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcChhhccCCchhHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            99888755543222221111             01111  12222211221 10                       122


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHH-H
Q 020838          202 KPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGATSPFAWSKLITV-Y  280 (320)
Q Consensus       202 ~~v~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlpv~lG~k~a~~la~~ll~~~y~~~il~g~~~~~~~~~~~~~-~  280 (320)
                      ...+++...+++|.....-..+.+|.|.||+.|++|+|+++|.|++.+++...+.+......+.+.....++   .+. .
T Consensus       158 ~~~~~l~~~~~~w~~~~~~~~a~~~~~dd~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~---~y~~~  234 (280)
T TIGR01473       158 LGAWLLFAIIFLWQPPHFWALALKYKDDYRAAGIPMLPVVKGERITKRQIALYTAALLPVSLLLAFLGGTGW---LYLIV  234 (280)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHCCCccCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccH---HHHHH
Confidence            333344455556666665566789999999999999999999999998887776666666555555544444   343 4


Q ss_pred             HHHHHHHHhhccccccCCC
Q 020838          281 FSFTLDHISCCPLNFIPLN  299 (320)
Q Consensus       281 ~h~vla~~L~~~~~~Vd~~  299 (320)
                      +-.+.+.++.++++.+|.+
T Consensus       235 ~~~~~~~~l~~~~~~~~~~  253 (280)
T TIGR01473       235 ATLLGALFLYLAFKFYRDP  253 (280)
T ss_pred             HHHHHHHHHHHHHHHhcCC
Confidence            5555677788888888776

This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.

>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed

Probab=99.83  E-value=2.9e-19  Score=168.92  Aligned_cols=215  Identities=12%  Similarity=0.092  Sum_probs=133.4

Q ss_pred             HHHhhhhhccchhHHhHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhccc---------cc
Q 020838           88 LDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK---------LP  158 (320)
Q Consensus        88 l~a~~kfsRPhTiigt~l~~l~g~llA~~~~~~~~~~~~~~~L~~lva~l~~n~~i~giNd~fD~EIDk---------iP  158 (320)
                      +++++|++||++.....++++.|+++|.+.  ..++   ..++.+.++..++++++|.+|||+|+|+|+         +|
T Consensus         2 ~~~~~~l~rp~~~~~~~~~~~~g~~la~~~--~~~~---~~~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~   76 (279)
T PRK12869          2 IKAYLKLLKPRVIWLLDLAAVAGYFLAAKH--GVSW---LPLIPLLIGGTLASGGSAAFNHGIERDIDKVMSRTSKRPTP   76 (279)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHhccC--CCCH---HHHHHHHHHHHHHHHHHHHHhchHhcCCCCCCCCCCCCCcC
Confidence            568899999999999999999999887432  2231   123445667777888999999999999999         89


Q ss_pred             cccchhhHHHHHHHHHHHHH-------------HHHHHHH--HHHHHHHHhcCCC------------------------C
Q 020838          159 LLRWKRFAVAAAMCILAVRA-------------VVVQLAF--YLHMQTHVYRRPA------------------------V  199 (320)
Q Consensus       159 ~~RlKr~~~la~~~Il~v~a-------------~iv~Lg~--~~h~~~~vlg~~~------------------------~  199 (320)
                      ++|++.+.++.....+...+             ..+.++.  +.+.++..+++-.                        .
T Consensus        77 sG~is~~~a~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~Yt~~lKr~~~~~~~v~~~~g~~~~l~g~~a~~g~  156 (279)
T PRK12869         77 VGLVNRKEALAVGSALSALGTALGFLLLGPLTALFIALGWFFYAVVYTIWLKPRTWLNIVIGGFAGNAAALAGYASGTGS  156 (279)
T ss_pred             CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcccccCChHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            99998887655432221111             1111111  2222222122211                        1


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHH
Q 020838          200 FSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGATSPFAWSKLITV  279 (320)
Q Consensus       200 ~~~~v~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlpv~lG~k~a~~la~~ll~~~y~~~il~g~~~~~~~~~~~~~  279 (320)
                      .+...+++...+++|..+..-..+.+|.|.|++.|++|+|+++|+|++.++...+..+..+...+.+. ...++   ++.
T Consensus       157 ~~~~~~ll~~~~~~w~~~~~~~l~~~d~edd~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~-~~~g~---~y~  232 (279)
T PRK12869        157 LDLEAVLLSFLIYLWTPGHIWSLALKYREDYRRAGVPMLPAVVGEKTSVRAISISNALMIPYILLLYL-YYIGL---IGL  232 (279)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHcCCeecceeecHHHHHHHHHHHHHHHHHHHHHHHH-hhccH---HHH
Confidence            22333444555566777776556778999999999999999999999998887776665555555454 33344   455


Q ss_pred             HHHHHHHHH-hhccccccCCC-Cc-h--HHHHHHHHH
Q 020838          280 YFSFTLDHI-SCCPLNFIPLN-DS-F--FCLYNLRAV  311 (320)
Q Consensus       280 ~~h~vla~~-L~~~~~~Vd~~-~~-~--~~~w~lf~~  311 (320)
                      .+-.+.... +.++.+.++.+ ++ .  +|.++..|.
T Consensus       233 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~s~~~l  269 (279)
T PRK12869        233 ILVAILSAALMATSIRALLNPTKEEAWKMFKASSPYL  269 (279)
T ss_pred             HHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHH
Confidence            444444343 33433444333 32 3  244444444

>PRK12871 ubiA prenyltransferase; Reviewed

Probab=99.83  E-value=7e-19  Score=168.38  Aligned_cols=207  Identities=17%  Similarity=0.158  Sum_probs=126.7

Q ss_pred             HHHHhhhhhccchhHHhHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhccc----------
Q 020838           87 ALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK----------  156 (320)
Q Consensus        87 ~l~a~~kfsRPhTiigt~l~~l~g~llA~~~~~~~~~~~~~~~L~~lva~l~~n~~i~giNd~fD~EIDk----------  156 (320)
                      .++.++|++|||+.+..+..++.|..+|......+++.  ..++..+++.+.+ ..++.+|||+|+|+|+          
T Consensus         4 ~~~~~~~l~Rp~~l~~~~~~~~~g~~lA~~~~g~~~~~--~~~l~~l~~~l~~-~ag~~iND~~D~~~D~~~v~rtm~r~   80 (297)
T PRK12871          4 TLKAYIDLTRAHFLPAWPLLFCSGLVLAFANYGGFSWE--LTIKAALIGLFGF-EAGFVLNDYVDRKRDRLDVENTLTRY   80 (297)
T ss_pred             hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHccCCCCHH--HHHHHHHHHHHHH-HHHHHHhhHHHHhcCcchHhhhhhcc
Confidence            46789999999999998888888887773211123321  1222233333443 3357999999999984          


Q ss_pred             --------cccccchhhHHHHHHHHHHHHHH-------------HHHHHHHHHH----HHHHhcC----CC---------
Q 020838          157 --------LPLLRWKRFAVAAAMCILAVRAV-------------VVQLAFYLHM----QTHVYRR----PA---------  198 (320)
Q Consensus       157 --------iP~~RlKr~~~la~~~Il~v~a~-------------iv~Lg~~~h~----~~~vlg~----~~---------  198 (320)
                              +|+++++.+.++....++...+.             .+.++++.+.    ++. .++    |.         
T Consensus        81 ~~P~~~Rpl~sG~is~~~a~~~~i~l~~i~~~l~~~l~~~~~~~~~~l~~~~~~~~~~Y~~-~kr~~~~p~~~l~G~~~~  159 (297)
T PRK12871         81 WRPFKERPIPSGKLSSKNAFALFILLAAVTSALILTLPYPNSLYVFVIMLYSYGIEAFYQV-KKRNQKYPVAQLLGRTDF  159 (297)
T ss_pred             ccCCCCCccCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccccccccHHHHHHHHHH
Confidence                    47788877765554422222111             1122223221    110 121    20         


Q ss_pred             ------------CcchHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHH
Q 020838          199 ------------VFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVG  266 (320)
Q Consensus       199 ------------~~~~~v~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlpv~lG~k~a~~la~~ll~~~y~~~il~g  266 (320)
                                  ..+...+.+..+.++|+.+++++||++|+|+|++.|++|+|+++|++++.++...+..+..+..+  +
T Consensus       160 ~~~~~~g~~~~g~~~~~~~ll~~~~~~w~~~~~~~~a~~D~e~D~~~G~~Tlpv~~G~~~t~~~i~~~~~l~~l~~~--~  237 (297)
T PRK12871        160 TLFPAAGYLCYGQPDMTALLYMVFFYPWTMAHLGLNDFIDLENDRARGMKSIAVLYGMKGTMYWVTGFTALHFLAAI--F  237 (297)
T ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHcCCeeeeeeechHHHHHHHHHHHHHHHHHHH--H
Confidence                        01122234455667889999999999999999999999999999999998766555555544333  3


Q ss_pred             hhCcchhHHHHHHHHHHHHHHHhhccccccCCCCc
Q 020838          267 ATSPFAWSKLITVYFSFTLDHISCCPLNFIPLNDS  301 (320)
Q Consensus       267 ~~~~~~~~~~~~~~~h~vla~~L~~~~~~Vd~~~~  301 (320)
                      .....++  ......-++.+..+.+|.+..+.+|+
T Consensus       238 ~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (297)
T PRK12871        238 FLRELGP--IALYGFLAGFVLLAGANLYLWKEKSQ  270 (297)
T ss_pred             HHHHhhH--HHHHHHHHHHHHHHHHHHHHhcCCCH
Confidence            3323232  22333435566677788787777765

>PRK05951 ubiA prenyltransferase; Reviewed

Probab=99.83  E-value=5.7e-19  Score=168.38  Aligned_cols=211  Identities=16%  Similarity=0.153  Sum_probs=132.7

Q ss_pred             HHHHhhhhhccchhHHhHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhHhhhhhh--hhccc--------
Q 020838           87 ALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSD--IEIDK--------  156 (320)
Q Consensus        87 ~l~a~~kfsRPhTiigt~l~~l~g~llA~~~~~~~~~~~~~~~L~~lva~l~~n~~i~giNd~fD--~EIDk--------  156 (320)
                      +++.+++.+||+|..++..+++.|..+|.....+++   +...+.+++++++++...|.+|||+|  +++|+        
T Consensus         3 ~~~~~~~~~Rp~tl~~s~~~v~lG~a~a~~~~~~f~---~~~~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~rt~~~~   79 (296)
T PRK05951          3 NAKLFFIFTRPWSFVMTAIVAFFSIAYGYYLFRSFD---PLLGALMLLGYFLLHASLNVFNDYKDYVLDCDHHETTGYRQ   79 (296)
T ss_pred             cHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCcC---HHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCccccccCCCC
Confidence            456788999999999999999999988854334555   33345567888889999999999999  55554        


Q ss_pred             --cccccchhhHHHHHHHHHHHHHH-------------HHHHHH------HHHHH-HHHhc-CCC---------------
Q 020838          157 --LPLLRWKRFAVAAAMCILAVRAV-------------VVQLAF------YLHMQ-THVYR-RPA---------------  198 (320)
Q Consensus       157 --iP~~RlKr~~~la~~~Il~v~a~-------------iv~Lg~------~~h~~-~~vlg-~~~---------------  198 (320)
                        +|.++++++.+.....++...+.             .+.++.      +.|.. ..-++ ++.               
T Consensus        80 r~l~~G~is~~~~~~~~~~~~~ia~~~g~~l~~~~~~~~l~l~~~~~~~~~~Yt~~P~~lky~glGe~~v~~~~g~~~vl  159 (296)
T PRK05951         80 HPIQAGIMTLGHLRVLGIALGAIALQLGWSLVLDRGIGAVTLALLGVFLWTCYMGPPFFLKYRWLGEHLVFYAWSHMLVM  159 (296)
T ss_pred             CccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCcccCCCCchHHHHHHHHHHHHHH
Confidence              56677766654443322111110             011111      11110 00011 110               


Q ss_pred             --------CcchHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHhhCc
Q 020838          199 --------VFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGATSP  270 (320)
Q Consensus       199 --------~~~~~v~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlpv~lG~k~a~~la~~ll~~~y~~~il~g~~~~  270 (320)
                              ..+...+....-..+++..+...++++|+|+||+.|+||+|+++|+|++ ++-..+...+|+..+.......
T Consensus       160 g~~~~~~~~~~~~~~~~sl~~~l~~~~il~~n~~~D~e~D~~~G~~Tlav~lG~~~a-~~~~~~~~~~~~~~~~~~~~g~  238 (296)
T PRK05951        160 GLIYVWLGNLSSPNLLAGVPLGLLMALVLLSNNLRDIEDDERKGIPTLAVIFGRRGA-ALYIFALLSPYVILQILLIAIL  238 (296)
T ss_pred             HHHHHHhCcccHHHHHHHHHHHHHHHHHHHHCCCccchhHHHCCCeeeeeeEcHhhH-HHHHHHHHHHHHHHHHHHHHhh
Confidence                    0111122222233455677889999999999999999999999999999 5555566777776665544432


Q ss_pred             chhHHHHHHHHHHHHHHHhhccccccCCCCc
Q 020838          271 FAWSKLITVYFSFTLDHISCCPLNFIPLNDS  301 (320)
Q Consensus       271 ~~~~~~~~~~~h~vla~~L~~~~~~Vd~~~~  301 (320)
                      ..+...+..++.......+.++++.+|.++.
T Consensus       239 ~~~~~l~~ll~lp~~~~~~~~~~~~~~~~~~  269 (296)
T PRK05951        239 TPLISLWALLSLLVAYALCLWQLRKFPPDPD  269 (296)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhCccccc
Confidence            2333346666777666677777777765553

>PRK13362 protoheme IX farnesyltransferase; Provisional

Probab=99.79  E-value=1.6e-17  Score=159.65  Aligned_cols=165  Identities=15%  Similarity=0.187  Sum_probs=114.4

Q ss_pred             HHHHHHHhhhhhccchhHHhHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhccc-------
Q 020838           84 VINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK-------  156 (320)
Q Consensus        84 ~~~~l~a~~kfsRPhTiigt~l~~l~g~llA~~~~~~~~~~~~~~~L~~lva~l~~n~~i~giNd~fD~EIDk-------  156 (320)
                      .+..+++++|++||+++....++++.|+++|...  +.++.   .++.++++..++.+.++.+|||+|+|+|+       
T Consensus         9 ~~~~l~~~~~L~RP~~~~~~~~~~~~G~~la~~~--~~~~~---~~~~~~lg~~l~~aaa~~~Nd~~D~~iD~~~~Rt~~   83 (306)
T PRK13362          9 WEASLKDYIQVTKPGIIFGNVISVAGGFFLASKG--HVDPV---LMLAAVIGLSLVVASGCALNNCIDRDIDAKMQRTRN   83 (306)
T ss_pred             HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccC--CCCHH---HHHHHHHHHHHHHHHHHHHhChHHhCcCCCCCCCCC
Confidence            3456788999999999999999999999887322  23321   12334455566677889999999999998       


Q ss_pred             --cccccchhhHHHHHHHHHHHHHH-------------HHHHHH--HHHHHHHHhcC-CC--------------------
Q 020838          157 --LPLLRWKRFAVAAAMCILAVRAV-------------VVQLAF--YLHMQTHVYRR-PA--------------------  198 (320)
Q Consensus       157 --iP~~RlKr~~~la~~~Il~v~a~-------------iv~Lg~--~~h~~~~vlg~-~~--------------------  198 (320)
                        +|+||+++..++....++...++             +..++.  +...++..+++ +.                    
T Consensus        84 RPlpsG~is~~~A~~~~~~l~~~g~~ll~~~~n~~~~~l~~~~~~~~~~~Yt~~lKr~t~~~~~vgg~~ga~p~l~G~~a  163 (306)
T PRK13362         84 RVTVTGEISLGEALGFGLALGVAGFGLLAAFTNPLAALFAAFGYVVYVGVYSLYLKRNSVYGTLVGSLSGAMPPVVGYCA  163 (306)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHhccCcHhHHHHHHHHHHHHHHHHHH
Confidence              99999998876554432211111             111222  22223321222 11                    


Q ss_pred             ---CcchHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCccchhhhChHHHHHHHHH
Q 020838          199 ---VFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCIS  253 (320)
Q Consensus       199 ---~~~~~v~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlpv~lG~k~a~~la~~  253 (320)
                         ..+...+++.+++++|+.+.+..++++|.|.|++.|++|+|+++|+|++.+.+..
T Consensus       164 ~~g~~~~~~~~l~~~~~~W~~~h~~~~ai~~~~Dy~~aG~~~lpv~~G~~~t~~~~~~  221 (306)
T PRK13362        164 VTGQFDAGALILLLMFSLWQMPHSYAIAIFRFNDYAAAGIPVLPVARGIAKTKLHIVL  221 (306)
T ss_pred             HcCCCcHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHCCCeeeceecChHHHHHHHHH
Confidence               1334455667778889999999999999999999999999999999999875543

>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=99.77  E-value=2.3e-17  Score=159.20  Aligned_cols=177  Identities=16%  Similarity=0.161  Sum_probs=114.9

Q ss_pred             HHHhhhhhccchhHHhHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhccc-----------
Q 020838           88 LDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK-----------  156 (320)
Q Consensus        88 l~a~~kfsRPhTiigt~l~~l~g~llA~~~~~~~~~~~~~~~L~~lva~l~~n~~i~giNd~fD~EIDk-----------  156 (320)
                      ++.++|.+||+|...+..+++.|..+|......+++   ...+.+++++++.....|.+|||+|.+.|+           
T Consensus         3 ~~~~~~~~Rp~tl~~s~~pvllG~a~a~~~~~~~~~---~~~ll~ll~~~~~~~~~N~~NDy~D~~~g~D~~~~~~~~~~   79 (317)
T PRK13387          3 AKLFLKLVEIHTKIASFFPVILGTLFSLYVAKIFDW---LLFLAFMVAMLAFDIATTAINNYMDFKKALDTADYVGIGNG   79 (317)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCccH---HHHHHHHHHHHHHHHHHHHHHhHHHHhcCCCcccccCCcch
Confidence            356899999999999999999999888543334552   233556777788899999999999988644           


Q ss_pred             cccccchhhHHHHHHHHHHHHHHH-------------HHHHH------HHHHH-HHHhcC-CC-----------------
Q 020838          157 LPLLRWKRFAVAAAMCILAVRAVV-------------VQLAF------YLHMQ-THVYRR-PA-----------------  198 (320)
Q Consensus       157 iP~~RlKr~~~la~~~Il~v~a~i-------------v~Lg~------~~h~~-~~vlg~-~~-----------------  198 (320)
                      ++.+.++++.+.....++...+.+             +.+|.      +.|.. ..-++. |.                 
T Consensus        80 i~~~~ls~~~v~~~~~~~~~ia~~~Gl~L~~~~g~~~l~igl~g~~~~~~Yt~gP~~l~y~gLGe~~v~i~~G~~~v~g~  159 (317)
T PRK13387         80 IGQHGLKPRNVLTVILLMYVVAAILGVYLCMNTSWLLLVIGLICFAIGILYTGGPLPLSRMPLGEIFSGLTMGFGIFLLA  159 (317)
T ss_pred             hccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHhhhhcCCCcccccCccHHHHHHHHHHHHHHHHH
Confidence            556666665543332221111111             11121      11110 000000 00                 


Q ss_pred             ------CcchHHH--------------------HHHHHHHHHHHHHHHHhcCCChhhhhhcCCccchhhhChHHHHHHHH
Q 020838          199 ------VFSKPLI--------------------FATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCI  252 (320)
Q Consensus       199 ------~~~~~v~--------------------~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlpv~lG~k~a~~la~  252 (320)
                            .++...+                    +...-+.+.+..+...|+++|+|+||+.|.||+|+++|+|++.++-.
T Consensus       160 ~yv~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~slp~g~l~~~ill~Nn~~D~e~D~~~gk~TL~v~lG~~~a~~l~~  239 (317)
T PRK13387        160 VYINTNTITIESLLFQGEMFTIQGNLIAIIAIGVISLPIIFTIANIMLANNLRDLDEDIKNHRYTLVYYIGREKGVVLFA  239 (317)
T ss_pred             HHHhcCCCchHHHHhcccchhhcchhHHHHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCeeeeeeEcHHhHHHHHH
Confidence                  0111111                    12333334566678999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHh
Q 020838          253 SLLEVAYTVAILVGA  267 (320)
Q Consensus       253 ~ll~~~y~~~il~g~  267 (320)
                      .+..++|+..+....
T Consensus       240 ~l~~~a~l~~~~~v~  254 (317)
T PRK13387        240 ILFYASYLAIAVIVL  254 (317)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999998765544

>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=99.76  E-value=5.4e-17  Score=156.01  Aligned_cols=180  Identities=17%  Similarity=0.177  Sum_probs=118.6

Q ss_pred             HHHHHhhhhhccchhHHhHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhh--ccccc---cc
Q 020838           86 NALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIE--IDKLP---LL  160 (320)
Q Consensus        86 ~~l~a~~kfsRPhTiigt~l~~l~g~llA~~~~~~~~~~~~~~~L~~lva~l~~n~~i~giNd~fD~E--IDkiP---~~  160 (320)
                      ++++.+++-+||+|...+..+++.|..+|.....++++   ...+..++++++.++..|.+|||+|.+  +|+-+   +.
T Consensus        10 ~~~~~w~~a~RP~tl~asl~pv~lG~a~a~~~~~~f~~---~~~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~~~~~~~   86 (304)
T PRK07419         10 SRRKLWLAAIKPPMYSVAIMPILVGTAWALGETGVFRL---DQFITFLLAAILILAWENLSNDVFDADTGIDKNKFHSVV   86 (304)
T ss_pred             cHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCCccH---HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccCcc
Confidence            45667889999999999999999999888554345663   333556788889999999999999998  78621   11


Q ss_pred             c--chhhHHHHH--HHHHH--H--------HHH-HHHHHHHHHHHHHHh-cCC---------------------------
Q 020838          161 R--WKRFAVAAA--MCILA--V--------RAV-VVQLAFYLHMQTHVY-RRP---------------------------  197 (320)
Q Consensus       161 R--lKr~~~la~--~~Il~--v--------~a~-iv~Lg~~~h~~~~vl-g~~---------------------------  197 (320)
                      |  .+++.+...  .+.+.  +        ++. ++.+|.....--..+ +.|                           
T Consensus        87 ~~~~~~~~v~~~~~~~~~~a~~~Gl~L~~~~g~~~l~ig~~g~~~~~~YT~gP~~l~y~gLGE~~v~l~~G~l~v~g~~y  166 (304)
T PRK07419         87 NLTGNKSLVFWLANLFLLLGLLGILAIALQSDWTVLGLVLLCCFLGYLYQGPPFRLGYQGLGEPLCFLAFGPLAVAAALY  166 (304)
T ss_pred             cccCcHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhheccCCCcccCCCCchHHHHHHHHHHHHHHHHHH
Confidence            1  122221111  11110  0        011 111222111000001 111                           


Q ss_pred             ---CCcchHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHhh
Q 020838          198 ---AVFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGAT  268 (320)
Q Consensus       198 ---~~~~~~v~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlpv~lG~k~a~~la~~ll~~~y~~~il~g~~  268 (320)
                         ..++..++.....+.+.+..+...++++|+|.||+.|.||+|+++|+|++.++-..+...+|+..+.....
T Consensus       167 v~t~~~~~~~~~~sl~~gll~~~IL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~ay~~~i~~v~~  240 (304)
T PRK07419        167 SQTPSWSLIPLAASIILGLATSLILFCSHFHQVEDDLAAGKRSPIVRLGTKRGAQLLPWIVGLIYALELLPVLL  240 (304)
T ss_pred             HhcCCCCHHHHHHHHHHHHHHHHHHHHcCCcchhhHHHcCCcceeeeechHhHHHHHHHHHHHHHHHHHHHHHH
Confidence               12334444445555567788889999999999999999999999999999999999999999988765554

>PRK13592 ubiA prenyltransferase; Provisional

Probab=99.76  E-value=5.7e-17  Score=155.30  Aligned_cols=178  Identities=16%  Similarity=0.161  Sum_probs=108.4

Q ss_pred             hhhHHHHHHHhhhhhccchhHHhHHHHHHHHHHhhccc-CCCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhccc---
Q 020838           81 LNSVINALDAFYRFSRPHTVIGTALSIVSVALLAVEKV-SDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK---  156 (320)
Q Consensus        81 ~~~~~~~l~a~~kfsRPhTiigt~l~~l~g~llA~~~~-~~~~~~~~~~~L~~lva~l~~n~~i~giNd~fD~EIDk---  156 (320)
                      .++++-|.++-+-+ +||-.++..+..-.-...++... .++.+  ....+.+++...+..+..+.+|||+|+||||   
T Consensus         2 ~k~~~iy~~e~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~vf~~~~~gniiNDy~D~EIDrIN~   78 (299)
T PRK13592          2 IKRLNVYLKEMYPL-LPRLILSLTLFFEIYMITLLSNHISSFRI--GIQEFVGVFTVFGFWMILRIADDFKDYETDRRLF   78 (299)
T ss_pred             chhHHHHHHHhccc-hhhhHHHHHHHHHHHHHhhhccCCCCCCC--chHHHHHHHHHHHHHHHhHHHHHHhhHHHhhhcC
Confidence            45566666666655 36777766666544444443322 34432  1122222233333444556799999999999   


Q ss_pred             ----cccccchhhHHHHHHHHHHHHHHHHH----------HHHHHHH----HHHHhcCCCCcchH---------------
Q 020838          157 ----LPLLRWKRFAVAAAMCILAVRAVVVQ----------LAFYLHM----QTHVYRRPAVFSKP---------------  203 (320)
Q Consensus       157 ----iP~~RlKr~~~la~~~Il~v~a~iv~----------Lg~~~h~----~~~vlg~~~~~~~~---------------  203 (320)
                          +|+||+|++.+......+.+.+..++          +..+.|.    .++.++.+..+|..               
T Consensus        79 P~RPLPsG~VS~~~A~~~si~L~~~~l~L~~l~~i~i~~~~i~~lY~~lm~a~~~K~~~l~gNl~Va~ltg~~f~~g~~~  158 (299)
T PRK13592         79 PHRALPSGRVKKKDLAIALSFIVAVSVLLNVLFMNNVGWFLFLYIYGTLMSFWFFKRDKIQNSLPLALVTHNPVMMILNL  158 (299)
T ss_pred             CCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCcchhhhhhccchhhhchhh
Confidence                99999999876665533333322221          1112220    12223333222111               


Q ss_pred             ------------------HHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCccchhhhChHHHHHHHHHHHHHHHHHHH
Q 020838          204 ------------------LIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAI  263 (320)
Q Consensus       204 ------------------v~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlpv~lG~k~a~~la~~ll~~~y~~~i  263 (320)
                                        .+++....++.++++||.||+|| |||+++ .+|+|+++|+|++.+++.++..++.+...
T Consensus       159 ~~~~fg~~~~g~~~~~~~~~~l~l~afl~~l~rEI~KdieD-~gd~~~-~~Tlpi~~G~kkA~~ia~~l~ii~v~~s~  234 (299)
T PRK13592        159 YTISFVCYKYNLPLLSLPTVLLAFTMYFPSLIWEVCRKIRA-PKDETE-YVTYSKLFGYKKATRFIEVVTLLDILTNF  234 (299)
T ss_pred             hhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhhcC-CccccC-CeeechhccchhHHHHHHHHHHHHHHHhh
Confidence                              12344556677899999999999 899975 99999999999999999988777666543

>PRK13591 ubiA prenyltransferase; Provisional

Probab=99.74  E-value=1.3e-16  Score=153.52  Aligned_cols=87  Identities=18%  Similarity=0.137  Sum_probs=66.4

Q ss_pred             HHHHHHhcCCChhhhhhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHHhhccccc
Q 020838          216 VVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGATSPFAWSKLITVYFSFTLDHISCCPLNF  295 (320)
Q Consensus       216 ~~i~i~KDi~DieGDr~~Gi~Tlpv~lG~k~a~~la~~ll~~~y~~~il~g~~~~~~~~~~~~~~~h~vla~~L~~~~~~  295 (320)
                      ++++++||++|+||||+.|.+|+|+++|++++.++..+++.++|++.++.....-..+...+.+-+-.+-...+|.-++.
T Consensus       193 ~~~~iindirDiEGDr~~G~kTLPV~lG~~~A~~l~~~l~~~~~l~li~~~~~g~l~~~~~~~~~s~~~~l~~~~~~~~~  272 (307)
T PRK13591        193 FINSCVYDFKDVKGDTLAGIKTLPVSLGEQKTRNLLLGIHLFSHLVLGIALIFGVIAFEPIILLYSFVCGLICIQVYSSP  272 (307)
T ss_pred             HHHHHHHHhhhhHhHHHcCCeeEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHcCC
Confidence            77889999999999999999999999999999999999999999988766554323333334443445555666666666


Q ss_pred             cCCCCch
Q 020838          296 IPLNDSF  302 (320)
Q Consensus       296 Vd~~~~~  302 (320)
                      .+.+.++
T Consensus       273 ~~~~~~~  279 (307)
T PRK13591        273 FENEPSF  279 (307)
T ss_pred             cccCcHH
Confidence            6666664

>PLN02922 prenyltransferase

Probab=99.71  E-value=1.5e-15  Score=146.69  Aligned_cols=177  Identities=15%  Similarity=0.171  Sum_probs=116.5

Q ss_pred             HHHHhhhhhccchhHHhHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhh--ccc---ccccc
Q 020838           87 ALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIE--IDK---LPLLR  161 (320)
Q Consensus        87 ~l~a~~kfsRPhTiigt~l~~l~g~llA~~~~~~~~~~~~~~~L~~lva~l~~n~~i~giNd~fD~E--IDk---iP~~R  161 (320)
                      +++.+++-.||+|...+..+++.|..+|......++   +...+..++++++.+...|.+|||+|.+  +|+   ..+.|
T Consensus        14 ~~~~w~~a~Rp~tl~~s~~pv~lG~a~A~~~~g~f~---~~~~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~~~~~~~~   90 (315)
T PLN02922         14 RATLWWRAIKLPMYSVALVPLTVGAAAAYLQTGLFD---ARRYGTLLLSSVLVITWLNLSNDAYDADTGVDKNKKESVVN   90 (315)
T ss_pred             HHHHHHHHhCcchHHHHHHHHHHHHHHHHHcCCCcc---HHHHHHHHHHHHHHHHHHHHHhhhhHhccCcCcccCCCCCC
Confidence            355678889999999999999999988865434566   3334557888899999999999999986  565   11111


Q ss_pred             c--hhhHHHHHH--H-------HHHH-H---HH-HHHHHHH----HHHHHHHhcCCC-----------------------
Q 020838          162 W--KRFAVAAAM--C-------ILAV-R---AV-VVQLAFY----LHMQTHVYRRPA-----------------------  198 (320)
Q Consensus       162 l--Kr~~~la~~--~-------Il~v-~---a~-iv~Lg~~----~h~~~~vlg~~~-----------------------  198 (320)
                      .  +++.+....  |       +..+ .   ++ ++.+|..    .++++   +.|.                       
T Consensus        91 ~~~s~~~v~~~~~~~~~la~~g~~ll~~~~~~~~~l~iG~~g~~~~~~Yt---~gP~pl~y~gLGE~~v~i~fG~l~v~g  167 (315)
T PLN02922         91 LVGSRRGVLAAAIGCLALGAAGLVWASLVAGNIRVILLLAAAILCGYVYQ---CPPFRLSYKGLGEPLCFAAFGPLATTA  167 (315)
T ss_pred             cccCHHHHHHHHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHh---cCCcccccCcchHHHHHHHHHHHHHHH
Confidence            1  222221111  1       0000 0   11 1112221    11110   0110                       


Q ss_pred             -----------------CcchHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCccchhhhChHHHHHHHHHHHHHHHHH
Q 020838          199 -----------------VFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTV  261 (320)
Q Consensus       199 -----------------~~~~~v~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlpv~lG~k~a~~la~~ll~~~y~~  261 (320)
                                       .++..++....-+.+.+..+...++++|+|.||+.|.||+|+++|+|++.++-.++...+|+.
T Consensus       168 ~y~~~~~~~~~~~~~~~~~~~~~~l~slp~gll~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~~  247 (315)
T PLN02922        168 FYLALASGAGGSEMAILPLTPTVLSASVLVGLTTTLILFCSHFHQIDGDRAVGKMSPLVRLGTEKGSRVVRWAVLLLYSL  247 (315)
T ss_pred             HHHHhcccccccccccccccHHHHHHHHHHHHHHHHHHHHccCcchhhHHHcCccceeeEEChHHHHHHHHHHHHHHHHH
Confidence                             112233344555556778889999999999999999999999999999999999999999998


Q ss_pred             HHHHHhhC
Q 020838          262 AILVGATS  269 (320)
Q Consensus       262 ~il~g~~~  269 (320)
                      .+...+..
T Consensus       248 ~i~~v~~~  255 (315)
T PLN02922        248 LAALGLLK  255 (315)
T ss_pred             HHHHHHHh
Confidence            87765543

>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase

Probab=99.70  E-value=1.1e-15  Score=145.62  Aligned_cols=175  Identities=18%  Similarity=0.171  Sum_probs=113.8

Q ss_pred             hhhhhccchhHHhHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhh--cccc---cccc--ch
Q 020838           91 FYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIE--IDKL---PLLR--WK  163 (320)
Q Consensus        91 ~~kfsRPhTiigt~l~~l~g~llA~~~~~~~~~~~~~~~L~~lva~l~~n~~i~giNd~fD~E--IDki---P~~R--lK  163 (320)
                      +++-+||+|...+..+++.|..+|......+++.   ..+..++++++.+...|.+|||+|.+  .|+-   .+.|  .+
T Consensus         2 w~~a~Rp~tl~~s~~pv~lG~alA~~~~~~f~~~---~~ll~li~~l~~q~~~N~~Ndy~D~~~G~D~~~~~~~~~~~~~   78 (285)
T TIGR02235         2 WLAAIKPPLYSVAVMPILVGTAVAWGQGGVFHLD---RFALFLIAAILILAWINLTNDVFDSDTGIDRFKLHSIVNLTGS   78 (285)
T ss_pred             hHHHhhhhHHHHHHHHHHHHHHHHHHcCCCcCHH---HHHHHHHHHHHHHHHHHHHHhHHHHhcCCCccccCCcccccCc
Confidence            3577899999999999999999886543456632   23456778889999999999999986  4661   1111  12


Q ss_pred             hhHHHHHHHHHHH------------HHH-HHHHHHHHHHHHHHh-cCC------------------------------CC
Q 020838          164 RFAVAAAMCILAV------------RAV-VVQLAFYLHMQTHVY-RRP------------------------------AV  199 (320)
Q Consensus       164 r~~~la~~~Il~v------------~a~-iv~Lg~~~h~~~~vl-g~~------------------------------~~  199 (320)
                      ++.+.....++..            ++. ++.+|......-..+ +.|                              ..
T Consensus        79 ~~~v~~~~~~~~~ia~~~g~~L~~~~~~~~l~lg~~g~~~~~~Yt~gP~~l~y~gLGE~~v~l~~G~l~v~g~~yvqt~~  158 (285)
T TIGR02235        79 RSLVFWLANFFLLIGLVGIAALSWRWQITVLALVGLCCFLGYLYQGPPFRLGYQGLGEPICWLCFGPLAIAAALYAQSQS  158 (285)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCCCcccCCCCccHHHHHHHHHHHHHHHHHHHhCCc
Confidence            2222111111100            111 111221111000000 111                              12


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHhh
Q 020838          200 FSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGAT  268 (320)
Q Consensus       200 ~~~~v~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlpv~lG~k~a~~la~~ll~~~y~~~il~g~~  268 (320)
                      +++..+....-+.+.+.++-..++++|+|.||+.|.||+|+++|+|++.++-..+...+|+..+..-..
T Consensus       159 ~~~~~~l~sl~~gl~~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~~~i~~v~~  227 (285)
T TIGR02235       159 FSLIPWKASILVGLATTLILFCSHFHQVEDDLAHGKRSPVVRLGTKLAAKIVPWVISLSYVVLLIAVIG  227 (285)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCcceeheecHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444555556677888999999999999999999999999999999999999999999987765444

This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.

>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase

Probab=99.66  E-value=5.4e-15  Score=140.88  Aligned_cols=169  Identities=20%  Similarity=0.152  Sum_probs=110.8

Q ss_pred             ccchhHHhHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhh--cc---c------cccccchh
Q 020838           96 RPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIE--ID---K------LPLLRWKR  164 (320)
Q Consensus        96 RPhTiigt~l~~l~g~llA~~~~~~~~~~~~~~~L~~lva~l~~n~~i~giNd~fD~E--ID---k------iP~~RlKr  164 (320)
                      ||+|...+..+++.|..+|.... .++   +...+.++++++++....|.+|||+|.+  +|   +      ++.+.++.
T Consensus         1 Rp~tl~~s~~pv~lG~ala~~~~-~f~---~~~~ll~~~~~~~~q~~~N~~NDy~D~~~G~D~~~~~~~~r~i~~g~is~   76 (284)
T TIGR00751         1 RPKTLPLAIAPIVAGTALAAWLH-AFV---WLVALLALATAVLLQILSNYANDYGDGIKGSDTDDRIGPLRGVQKGLITP   76 (284)
T ss_pred             CCchHHHHHHHHHHHHHHHHHcC-Ccc---HHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCChhhccCCcchhcCCCCCH
Confidence            99999999999999998885432 555   3334556788889999999999999984  24   3      56666655


Q ss_pred             hHHHHHHHHHHH----HHH---------------HHHHHHHHHHHHHHh-cCCC--------------------------
Q 020838          165 FAVAAAMCILAV----RAV---------------VVQLAFYLHMQTHVY-RRPA--------------------------  198 (320)
Q Consensus       165 ~~~la~~~Il~v----~a~---------------iv~Lg~~~h~~~~vl-g~~~--------------------------  198 (320)
                      +.+.....++..    .+.               ++.+|......-..+ +.|.                          
T Consensus        77 ~~v~~~~~~~~~~a~~~Gi~l~~~~~~~~~~~~~~l~lg~~~~~~~~~Yt~gP~~l~y~gLGE~~v~i~~G~l~v~g~~y  156 (284)
T TIGR00751        77 REVKTALITSVALGALSGLVLALLAAPNLSDLFWFIALGALCIAAAITYTVGSKPYGYAGLGDISVLVFFGPLAVLGTQY  156 (284)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHHHhHhhcCCCCccccCchHHHHHHHHHHHHHHHHHHH
Confidence            544332211111    110               111122110000000 1111                          


Q ss_pred             ----CcchHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHhh
Q 020838          199 ----VFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGAT  268 (320)
Q Consensus       199 ----~~~~~v~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlpv~lG~k~a~~la~~ll~~~y~~~il~g~~  268 (320)
                          .++....+...-..+.+..+...|+++|+|+||+.|.||+|+++|+|++.++-..+...+|+..++....
T Consensus       157 vq~~~~~~~~ll~sl~~g~l~~~il~~Nn~~D~~~D~~~Gk~Tl~v~lG~~~a~~l~~~l~~~ay~~~~~~~~~  230 (284)
T TIGR00751       157 LQAHRVDWVGILPAVATGLLACAVLNINNLRDIPTDARAGKNTLAVRLGDARTRMYHQGLLAVAGVCTFVFMLA  230 (284)
T ss_pred             HhcCCCCHHHHHHHHHHHHHHHHHHHHcCcccchhHHHcCCEeehhhcchHhHHHHHHHHHHHHHHHHHHHHHH
Confidence                1222222233334566788899999999999999999999999999999999999999999887765443

This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.

>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]

Probab=99.60  E-value=6.6e-14  Score=134.41  Aligned_cols=179  Identities=21%  Similarity=0.247  Sum_probs=118.8

Q ss_pred             HHHHhhhhhccchhHHhHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhh--ccc--------
Q 020838           87 ALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIE--IDK--------  156 (320)
Q Consensus        87 ~l~a~~kfsRPhTiigt~l~~l~g~llA~~~~~~~~~~~~~~~L~~lva~l~~n~~i~giNd~fD~E--IDk--------  156 (320)
                      +.+.+++..||||..++..+++.|..+|......++   +...+.+++++++.+...|..|||+|.+  .|.        
T Consensus         7 ~~~~wl~~~rP~Tl~aai~Pv~~G~a~A~~~~~~f~---~~~~ll~Li~~~~iq~~vN~~NdY~D~~KG~D~~g~~~~~~   83 (303)
T COG1575           7 KTQLWLELARPKTLPAAIAPVIVGTALAFWYGKSFN---LLVALLALIAAILLQILVNLANDYFDYKKGTDTHGPDRLKQ   83 (303)
T ss_pred             HHHHHHHhcCccchHHHHHHHHHHHHHHHHHccchH---HHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCccccc
Confidence            346789999999999999999999999866443344   4555678999999999999999999986  662        


Q ss_pred             ---cccccchhhHHHHHHHHHHHHH-----H---------HHHHHHHHHHHHHHh-cCCC--------------------
Q 020838          157 ---LPLLRWKRFAVAAAMCILAVRA-----V---------VVQLAFYLHMQTHVY-RRPA--------------------  198 (320)
Q Consensus       157 ---iP~~RlKr~~~la~~~Il~v~a-----~---------iv~Lg~~~h~~~~vl-g~~~--------------------  198 (320)
                         +-+-+.|+...+... ++...+     +         ++.+|..+...-..+ |+|.                    
T Consensus        84 ~g~I~~~~~k~~~~l~l~-l~~~~g~~llg~~~~~~s~~~~l~lG~l~~~~g~~YTgGp~PlgY~gLGEi~~~vffG~l~  162 (303)
T COG1575          84 SGLIVRQSMKPALILSLA-LFLLAGLALLGVILAALSDWLVLLLGLLCIAAGILYTGGPFPLGYMGLGEIFVGVFFGPLI  162 (303)
T ss_pred             cceeecccCCHHHHHHHH-HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHheeeeccCCcCcccCCHHHHHHHHHHHHHH
Confidence               334444444322211 111111     1         112222111100000 1121                    


Q ss_pred             ----------CcchHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHhh
Q 020838          199 ----------VFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGAT  268 (320)
Q Consensus       199 ----------~~~~~v~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlpv~lG~k~a~~la~~ll~~~y~~~il~g~~  268 (320)
                                .++...........+-+..+...+.+.|+|-|++.|.+|+|+|+|+|++..+=..++..+|++.++.-..
T Consensus       163 v~g~~yiqt~~~~~~~ll~slp~gil~~~Il~aNNirDie~D~~~gk~TLavrLG~~~~~~l~~~l~~~a~l~~~~~~i~  242 (303)
T COG1575         163 VLGAYYIQTGRLSWAILLPSLPVGILIANILLANNLRDIEEDIRNGKYTLAVRLGRKNARKLYAALLVVAYLAIVIFVIL  242 (303)
T ss_pred             HHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhcccccchhHHhcCCcceeeeeccHhHHHHHHHHHHHHHHHHHHHHHH
Confidence                      1222222233334445566789999999999999999999999999999999999999999988775443


Q ss_pred             C
Q 020838          269 S  269 (320)
Q Consensus       269 ~  269 (320)
                      .
T Consensus       243 ~  243 (303)
T COG1575         243 G  243 (303)
T ss_pred             H
Confidence            3

>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]

Probab=99.60  E-value=4.8e-14  Score=128.24  Aligned_cols=120  Identities=28%  Similarity=0.381  Sum_probs=76.8

Q ss_pred             HHHHHHHHHHHHHHhHhhhhhhhhccc---------cccccchhhHHHHHHHHHHHHHHHH---------------HHHH
Q 020838          130 LEAIAAALMMNIYIVGLNQLSDIEIDK---------LPLLRWKRFAVAAAMCILAVRAVVV---------------QLAF  185 (320)
Q Consensus       130 L~~lva~l~~n~~i~giNd~fD~EIDk---------iP~~RlKr~~~la~~~Il~v~a~iv---------------~Lg~  185 (320)
                      +..+++++++..+++.+||++|+|.|+         +|.++++++.......++.+-+.++               .+..
T Consensus        26 ~~~~l~~~~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~i~~~~~~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~~  105 (257)
T PF01040_consen   26 LLGLLAVFLLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGRISPRQALIFALILLLLGLLLALLLGPWFLLILLLGFLLG  105 (257)
T ss_pred             HHHHHHHHHHHHHHHHhhChhhhhcCcccccccCcchhHHHHhHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence            344555567788889999999999999         5677887664433222111111110               1111


Q ss_pred             HHHHHH-HHhcCCC-----------------------CcchHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCccchhh
Q 020838          186 YLHMQT-HVYRRPA-----------------------VFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVR  241 (320)
Q Consensus       186 ~~h~~~-~vlg~~~-----------------------~~~~~v~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlpv~  241 (320)
                      +.|... ..++.+.                       ..+.+......+..++...+...+|++|+||||+.|.+|+|++
T Consensus       106 ~~Ys~~~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~D~~~g~~Tl~v~  185 (257)
T PF01040_consen  106 LLYSPPLRLKRRPLWGELVVALVFGLLILLGAYAAGGDPPPPPFLLAIFFFLLIFAIMFFNDIRDIEGDRKAGRRTLPVL  185 (257)
T ss_pred             HHHhhhhhhcceeccchhhHHHhhhHhhhhhhhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCCcchHHH
Confidence            233210 1111111                       1133444555555778888888999999999999999999999


Q ss_pred             hChHHHHH
Q 020838          242 LGQKRVFW  249 (320)
Q Consensus       242 lG~k~a~~  249 (320)
                      +|++++..
T Consensus       186 ~G~~~~~~  193 (257)
T PF01040_consen  186 LGEKKARY  193 (257)
T ss_pred             HHHHHHHH
Confidence            99999998

These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane

>PLN02776 prenyltransferase

Probab=99.53  E-value=1e-12  Score=128.36  Aligned_cols=198  Identities=12%  Similarity=0.051  Sum_probs=125.3

Q ss_pred             hccchhHHhHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhccc---------cccccchhh
Q 020838           95 SRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK---------LPLLRWKRF  165 (320)
Q Consensus        95 sRPhTiigt~l~~l~g~llA~~~~~~~~~~~~~~~L~~lva~l~~n~~i~giNd~fD~EIDk---------iP~~RlKr~  165 (320)
                      ++|.-+....+..++|+++|.+...  +   +..++..+++..++.+.+|++||++|+|||+         +|.||+++.
T Consensus         2 ~Kpri~~lv~~ta~~G~~lA~~~~~--~---~~~l~~~~lg~~l~~aaa~~~N~i~DrdiD~~m~RT~~RPLpsGris~~   76 (341)
T PLN02776          2 SKARLSALVVATSGAGFVLGSGEAI--D---LPGLGWTCAGTMLCAASANTLNQVFEVKNDSKMKRTMRRPLPSGRISVP   76 (341)
T ss_pred             CcchhHHHHHHHHHHHHHHhcCCCC--C---HHHHHHHHHHHHHHHHHHHHHHhHHhhhhcccCCCCCCCCCCCCCCCHH
Confidence            4666677778888899988744322  2   2234455777788899999999999999998         999999988


Q ss_pred             HHHHHHHHHHHHHH------------HH-H--HHHHHHHHHHHhcCCC------------------------CcchHHHH
Q 020838          166 AVAAAMCILAVRAV------------VV-Q--LAFYLHMQTHVYRRPA------------------------VFSKPLIF  206 (320)
Q Consensus       166 ~~la~~~Il~v~a~------------iv-~--Lg~~~h~~~~vlg~~~------------------------~~~~~v~~  206 (320)
                      .++.+..++...++            .+ .  +.+|...++. +++-.                        ..+...++
T Consensus        77 ~A~~~~~~l~~~g~~~l~~~~n~l~~~l~~~~~~ly~~vYt~-lKR~t~~~~~lG~~~Ga~ppL~Gw~Avtg~~~~~~~~  155 (341)
T PLN02776         77 HAVAWAVVVGAAGVALLAYKTNMLTAGLGAGNILLYAFVYTP-LKQIHPANTWVGAVVGAIPPLMGWAAASGQLDAGAMV  155 (341)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh-HccCCchhHHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence            76554433222111            11 1  1112212222 22100                        23444556


Q ss_pred             HHHHHHHHHHHHHHHhcCCChhhhhhcCCccchhhh--ChHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHHHH
Q 020838          207 ATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRL--GQKRVFWTCISLLEVAYTVAILVGATSPFAWSKLITVYFSFT  284 (320)
Q Consensus       207 lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlpv~l--G~k~a~~la~~ll~~~y~~~il~g~~~~~~~~~~~~~~~h~v  284 (320)
                      +.+.+++|...=.-.-.+.|.|-|++.|++.+|+.-  |++.+..+....+.+.-+..+..+......+   .++.+-++
T Consensus       156 Lf~~~~~Wq~pHf~~la~~~~dDy~~ag~pmlpv~~~~g~~ta~~i~~~~~~l~~~~ll~~~~g~~~~~---~~~~a~~l  232 (341)
T PLN02776        156 LAAALYFWQMPHFMALAYMCRDDYAAGGYRMLSLADATGRRTALVALRNCLYLAPLGFLAYDWGVTSSP---FALEAALL  232 (341)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHhCCCcccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH---HHHHHHHH
Confidence            666677888743333344555578899999999855  6777777777777666555554443322233   55666666


Q ss_pred             HHHHhhccccccCCCCc
Q 020838          285 LDHISCCPLNFIPLNDS  301 (320)
Q Consensus       285 la~~L~~~~~~Vd~~~~  301 (320)
                      -+.+++++++.++.+|+
T Consensus       233 ~~~~l~~~~~~~~~~~~  249 (341)
T PLN02776        233 TAYLAASAASFYREPTN  249 (341)
T ss_pred             HHHHHHHHHHHhcCCCh
Confidence            77888999999977663

>PRK08238 hypothetical protein; Validated

Probab=99.20  E-value=3.3e-10  Score=115.27  Aligned_cols=178  Identities=19%  Similarity=0.115  Sum_probs=106.6

Q ss_pred             hhcccceeeecccCCCCCCCCCCCCCCCCchhhHHHHHHHhhhhhccchhHHhHHHHHHHHHHhhcccCCCChHHHHHHH
Q 020838           51 QKIKIKHLANAASGHPLQSNQPDDYKPKSPLNSVINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVL  130 (320)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~kfsRPhTiigt~l~~l~g~llA~~~~~~~~~~~~~~~L  130 (320)
                      +..++.++||..++-...  ..+...|....++.+..+++|+|++|||.|++..+.++ +.+.+.. ..  ++..+..++
T Consensus       156 ~~A~~av~Vn~~~~l~~~--a~~~~~~~~~~~~~~~~~~~~~~l~Rp~q~~kn~l~~~-p~l~a~~-~~--~~~~~~~~~  229 (479)
T PRK08238        156 AAARRAIVVGASPGVARA--ARALGPVERVFPPRPARLRTWLKALRVHQWAKNLLVFV-PLLAAHQ-FG--DLQALLAAL  229 (479)
T ss_pred             HhCCCeEEECCCHHHHHH--HHHcCCcceecCCCchHHHHHHHHhCCcHHHHHHHHHH-HHHHhcc-cC--ChHHHHHHH
Confidence            455566667755431110  11122333445566777899999999999999998755 6655522 11  222233344


Q ss_pred             HHHHHHHHHHHHHhHhhhhhhhhccc---------cccccchhhHHHHHHHHHHHHHHHH----H-------HHHH--HH
Q 020838          131 EAIAAALMMNIYIVGLNQLSDIEIDK---------LPLLRWKRFAVAAAMCILAVRAVVV----Q-------LAFY--LH  188 (320)
Q Consensus       131 ~~lva~l~~n~~i~giNd~fD~EIDk---------iP~~RlKr~~~la~~~Il~v~a~iv----~-------Lg~~--~h  188 (320)
                      .++++..++.++++.+||++|+|+|+         +|+||++....+....++.+.++.+    +       ++.+  ..
T Consensus       230 ~~f~~~~l~~sa~~~~ND~~D~e~Dr~~~rk~~RPlasG~is~~~A~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~~~~  309 (479)
T PRK08238        230 LAFLAFSLCASAVYILNDLLDLEADRAHPRKRRRPFASGALPIPFGLAAAPLLLLAGLALALALGPAFLLVLLAYLALTL  309 (479)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHhhhhccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            45555567778888999999999999         9999998887655543332222111    1       1111  11


Q ss_pred             HHHHHhcC-CC---------------------CcchHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCC
Q 020838          189 MQTHVYRR-PA---------------------VFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGI  235 (320)
Q Consensus       189 ~~~~vlg~-~~---------------------~~~~~v~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi  235 (320)
                      .++..+++ +.                     ..+.+.|+ .++.+++....++.|...|++++++.|-
T Consensus       310 ~Ys~~lKr~~~~~~~~la~~~~lr~~~G~~a~~~~~s~wl-l~~~~~~~l~la~~KR~~El~~~~~~~~  377 (479)
T PRK08238        310 AYSLRLKRKVLVDVLTLAALYTLRIIAGAAAIGVALSFWL-LAFSMFFFLSLALVKRYTELRRALQRGK  377 (479)
T ss_pred             HhhHHhcCCccccchHHHHHHHHHHHHHHHHhccCHHHHH-HHHHHHHHHHHHHHHhHHHHHHHHhcCC
Confidence            12222332 11                     11233333 3355567788999999999999999885

>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]

Probab=99.17  E-value=5.8e-09  Score=100.51  Aligned_cols=158  Identities=16%  Similarity=0.157  Sum_probs=106.2

Q ss_pred             HHHHHHHhhhhhccchhHHhHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhccc-------
Q 020838           84 VINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK-------  156 (320)
Q Consensus        84 ~~~~l~a~~kfsRPhTiigt~l~~l~g~llA~~~~~~~~~~~~~~~L~~lva~l~~n~~i~giNd~fD~EIDk-------  156 (320)
                      -+...++|+++.+|.-+....+..++|+.+|...  ..+   ...++.++++..++.+.++++|.++|+|||+       
T Consensus        14 ~~~~~k~yl~LtKPrvi~L~~it~~~g~~lA~~~--~~~---~~l~~~~~~g~~L~a~~a~a~N~~~DrDID~~M~RT~~   88 (304)
T COG0109          14 SRSTIKDYLQLTKPRVISLLLITAFAGMLLAPRG--SIN---PLLLLLTLLGGALGAGGAGAFNMYIDRDIDALMERTRK   88 (304)
T ss_pred             hHHHHHHHHHHhCCeeeehHHHHHHHHHHHcccc--ccc---HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhhhccC
Confidence            3467889999999999999999999999998541  222   2223344555555666778999999999999       


Q ss_pred             --cccccchhhHHHHHHHHHHHHHHHH-------------HHHHHHH--HHHHHhcCCC---------------------
Q 020838          157 --LPLLRWKRFAVAAAMCILAVRAVVV-------------QLAFYLH--MQTHVYRRPA---------------------  198 (320)
Q Consensus       157 --iP~~RlKr~~~la~~~Il~v~a~iv-------------~Lg~~~h--~~~~vlg~~~---------------------  198 (320)
                        +|.|+++.+.++.+...+.+.++..             ..+++.|  .+|.+++|..                     
T Consensus        89 RP~~~G~i~p~~al~fgl~L~~~g~~~l~~~vn~laa~l~~~gi~~Yv~vYT~~lKR~T~~NiviGg~aGa~PpliGwaA  168 (304)
T COG0109          89 RPLVTGLISPREALAFGLVLGVAGFSLLWFLVNLLAAVLGLFGIFFYVVVYTLWLKRRTPQNIVIGGFAGAMPPLIGWAA  168 (304)
T ss_pred             CCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCcccceeeeeccccccccceeee
Confidence              9999999998888776655543222             2233333  3344454411                     


Q ss_pred             ---CcchHHHHHHHHHHHHH------HHHHHHhcCCChhhhhhcCCccchhhhChHHHHHHHH
Q 020838          199 ---VFSKPLIFATAFMSFFS------VVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCI  252 (320)
Q Consensus       199 ---~~~~~v~~lt~f~~~f~------~~i~i~KDi~DieGDr~~Gi~Tlpv~lG~k~a~~la~  252 (320)
                         ..+...+.+.+.+++|+      +++..-+|      =++.|+.-+|+.-|++.+.+-..
T Consensus       169 vtg~~~~~a~~Lf~IiF~WtPpHfwALAl~~~~D------Y~~AgiPMlPvv~G~~~t~~~I~  225 (304)
T COG0109         169 VTGSISLGAILLFAIIFLWTPPHFWALALKYKDD------YKAAGIPMLPVVKGERRTKRQIL  225 (304)
T ss_pred             eeCCCCchHHHHHHHHHHhccHHHHHHHHHHHHH------HHHcCCCcccccccHHHHHHHHH
Confidence               12333444555555544      44444333      25789999999999998887443

>KOG1381 consensus Para-hydroxybenzoate-polyprenyl transferase [Coenzyme transport and metabolism]

Probab=99.01  E-value=2.1e-09  Score=102.37  Aligned_cols=208  Identities=14%  Similarity=0.102  Sum_probs=133.3

Q ss_pred             HHHhhhhhccchhHHhHHH-HHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhccc---------c
Q 020838           88 LDAFYRFSRPHTVIGTALS-IVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK---------L  157 (320)
Q Consensus        88 l~a~~kfsRPhTiigt~l~-~l~g~llA~~~~~~~~~~~~~~~L~~lva~l~~n~~i~giNd~fD~EIDk---------i  157 (320)
                      .+.|-|++|-..-+||=+- --+..-++....++..|..-. +..+=+..+.|+++.+.|||+.|+|+|+         +
T Consensus        64 ~~pYaqLmRldkPiGTwLLywPCtWSIamaAdag~~p~~~m-L~LFG~GAllMRgAGCtINDlwDkdlD~KVeRtklRPl  142 (353)
T KOG1381|consen   64 WKPYAQLMRLDKPIGTWLLYWPCTWSIAMAADAGLLPSIKM-LALFGVGALLMRGAGCTINDLWDKDLDAKVERTKLRPL  142 (353)
T ss_pred             chhHHHHHhcCCCceeeeeecchHHHHHhccCCCccchhHH-HHHhcccHHHhccCCceehhhhhhhhhhhHhhhccccc
Confidence            5688899998888887331 111222222222222222211 1122334467899999999999999999         7


Q ss_pred             ccccchhhHHHHHHHHHHHH--HHHHHHHHH---------------------HHHHHHHhcCCCC-------------cc
Q 020838          158 PLLRWKRFAVAAAMCILAVR--AVVVQLAFY---------------------LHMQTHVYRRPAV-------------FS  201 (320)
Q Consensus       158 P~~RlKr~~~la~~~Il~v~--a~iv~Lg~~---------------------~h~~~~vlg~~~~-------------~~  201 (320)
                      -+|+++.+..+.++..-...  +++++|-.|                     -|.-..++|..+.             .+
T Consensus       143 AsG~ls~~qaI~fL~~ql~~gLgiLlqLn~ysi~lg~~sl~~v~~ypl~kr~TY~pq~vLgltfnwGAllGw~A~~g~~~  222 (353)
T KOG1381|consen  143 ASGSLSPRQAIGFLGAQLSLGLGILLQLNWYSIALGASSLALVITYPLMKRFTYWPQLVLGLTFNWGALLGWCALKGSLS  222 (353)
T ss_pred             ccCCcchhHHHHHHHHHHHHhHHHHHhccHHHHHhcccccccEEEeehhhhcchhHHHHHhhhcchhhhhcchhhcCccC
Confidence            78999888776665322222  222222111                     1111123333221             11


Q ss_pred             h-HHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHH
Q 020838          202 K-PLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGATSPFAWSKLITVY  280 (320)
Q Consensus       202 ~-~v~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlpv~lG~k~a~~la~~ll~~~y~~~il~g~~~~~~~~~~~~~~  280 (320)
                      + .+.-+-..-.+|++.-+.+++-||-+-|-+-|++|-+.|+|.+.=.|++. +-......+..+|+.+..+|   .+..
T Consensus       223 ~s~~~plYls~v~Wtl~YDTIYAHQDK~dDvk~gvkSTALrfG~nTK~wl~g-f~a~~ia~La~aG~~s~q~~---pyy~  298 (353)
T KOG1381|consen  223 PSAVLPLYLSGVCWTLIYDTIYAHQDKRDDVKIGVKSTALRFGDNTKPWLSG-FGAAQIASLAAAGIASDQTW---PYYA  298 (353)
T ss_pred             hhhhhHHHHhhhhhhhhhhhhhhcccchhhhHhcchhhhhhcCCCCchHHhh-hhHHHHHHHHHhhhccCCCc---hHHH
Confidence            2 12223333447999999999999999999999999999999987777764 44555666677789888888   5556


Q ss_pred             HHHHHHHHhhccccccCCCC
Q 020838          281 FSFTLDHISCCPLNFIPLND  300 (320)
Q Consensus       281 ~h~vla~~L~~~~~~Vd~~~  300 (320)
                      +.++.++=|-.|-..||+++
T Consensus       299 ~lg~~~~~L~~~i~~vdiDn  318 (353)
T KOG1381|consen  299 ALGAVAARLGSQIYKVDIDN  318 (353)
T ss_pred             HHHHHHHHHHhheeeeecCC
Confidence            67888899999999999976

>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional

Probab=98.94  E-value=7.5e-08  Score=92.72  Aligned_cols=91  Identities=16%  Similarity=0.150  Sum_probs=60.9

Q ss_pred             HHHHHHHhhhhhccchhHHhHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhccc-------
Q 020838           84 VINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK-------  156 (320)
Q Consensus        84 ~~~~l~a~~kfsRPhTiigt~l~~l~g~llA~~~~~~~~~~~~~~~L~~lva~l~~n~~i~giNd~fD~EIDk-------  156 (320)
                      .++.+++++|.+|||.|+...+....+ +.+.+. .+..  .+...+.++++..++++.++.+||++|+|+|+       
T Consensus         7 ~~~~l~~~l~L~RP~~w~~nll~~~~~-~~a~~~-~~~~--~~~~~llafl~~~l~~sa~y~iND~~D~e~Dr~~prk~~   82 (295)
T PRK12324          7 PKNLLAGYLKLLRPKQWIKNLFVFAAP-IFAGNL-LNPG--ALLKVLLAFVLFCLASSAVYLVNDIRDVEADRLHPTKRN   82 (295)
T ss_pred             hHHHHHHHHHHhCchHHHHHHHHHHHH-HHHHhh-cccc--hHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhccCCCCCC
Confidence            456788999999999999988865544 333221 1111  12223334444445677778999999999999       


Q ss_pred             --cccccchhhHHHHHHHHHHHHH
Q 020838          157 --LPLLRWKRFAVAAAMCILAVRA  178 (320)
Q Consensus       157 --iP~~RlKr~~~la~~~Il~v~a  178 (320)
                        +|+||++....+....++...+
T Consensus        83 RPlasG~is~~~A~~~~~~l~~~~  106 (295)
T PRK12324         83 RPIASGVVSVSLAYILAVVLLVAS  106 (295)
T ss_pred             CCCCCCccCHHHHHHHHHHHHHHH
Confidence              8999998887766654443333

>KOG4581 consensus Predicted membrane protein [Function unknown]

Probab=96.12  E-value=0.094  Score=49.89  Aligned_cols=48  Identities=19%  Similarity=0.273  Sum_probs=42.5

Q ss_pred             HHhcCCChhhhhhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHh
Q 020838          220 LFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGA  267 (320)
Q Consensus       220 i~KDi~DieGDr~~Gi~Tlpv~lG~k~a~~la~~ll~~~y~~~il~g~  267 (320)
                      =-++-.|.|-||+.||-|+++.+|+...-.+-..++..-|.+..+.|.
T Consensus       247 hsnntrd~dndr~agivtlailig~t~s~ily~~llf~py~lf~i~~~  294 (359)
T KOG4581|consen  247 HSNNTRDADNDREAGIVTLAILIGPTASHILYAMLLFAPYLLFFIFAL  294 (359)
T ss_pred             ccCCCcccccccccCeEEEEEeecccHHHHHHHHHHHHHHHHHHHHHH
Confidence            356789999999999999999999999988888888888988877765

>KOG1380 consensus Heme A farnesyltransferase [Coenzyme transport and metabolism]

Probab=94.32  E-value=0.016  Score=57.28  Aligned_cols=85  Identities=15%  Similarity=0.117  Sum_probs=59.7

Q ss_pred             hhHHHHHHHhhhhhccchhHHhHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhccc-----
Q 020838           82 NSVINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK-----  156 (320)
Q Consensus        82 ~~~~~~l~a~~kfsRPhTiigt~l~~l~g~llA~~~~~~~~~~~~~~~L~~lva~l~~n~~i~giNd~fD~EIDk-----  156 (320)
                      +-.+++++.|+|+++|.--.-..+...+||.+|-+.   ++   +..++..-+...+..+.+|++||+++.+.|.     
T Consensus        88 ~lp~k~~~~y~eLsK~rLT~LVV~tt~~gYalap~p---~s---~~~l~~~tvGT~L~S~sANaiNQ~~E~~~DsqM~RT  161 (409)
T KOG1380|consen   88 TLPGKYARCYLELSKPRLTMLVVLTTMTGYALAPGP---FS---FPTLLYTTVGTGLCSASANAINQIFEPPFDSQMKRT  161 (409)
T ss_pred             CCCcchHHHHHHhcccceEEEEeeeccccccccccC---CC---cchhHHHhhhhHHHHhhhHhhhhhccCCchhhhHhh
Confidence            344678899999999987766677778888776332   32   2233333344444466778999999999998     


Q ss_pred             ----cccccchhhHHHHHHH
Q 020838          157 ----LPLLRWKRFAVAAAMC  172 (320)
Q Consensus       157 ----iP~~RlKr~~~la~~~  172 (320)
                          +|.+|++.--++.+..
T Consensus       162 ~~Rplv~g~isp~hA~~fAt  181 (409)
T KOG1380|consen  162 QNRPLVRGRISPLHAVTFAT  181 (409)
T ss_pred             cccccccCccChHHHHHHHH
Confidence                9999998776655553

>TIGR02056 ChlG chlorophyll synthase, ChlG

Probab=86.35  E-value=4.7  Score=39.04  Aligned_cols=56  Identities=13%  Similarity=0.093  Sum_probs=36.9

Q ss_pred             HHHHHHHHHHHHHhcCCChhhhhhcC-Cccchh-hhChHHHHHHHHHHHHHHHHHHHH
Q 020838          209 AFMSFFSVVIALFKDVPDLEGDKTFG-IRTFTV-RLGQKRVFWTCISLLEVAYTVAIL  264 (320)
Q Consensus       209 ~f~~~f~~~i~i~KDi~DieGDr~~G-i~Tlpv-~lG~k~a~~la~~ll~~~y~~~il  264 (320)
                      ....+...+-.+++|.-|.|-|+..+ -|.+|. ++.+|.+..++..++.++.+..+.
T Consensus        61 l~~~l~~~~~n~~NDy~D~d~D~~~~~~Rpi~~G~is~~~a~~~~~~l~~~~~~lg~~  118 (306)
T TIGR02056        61 LSGPCLTGYTQTINDFYDRDIDAINEPYRPIPSGAISEPEVITQIVLLFIAGIAIAFI  118 (306)
T ss_pred             HHHHHHHHHHHHHHhHhhhhhhccCCCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHH
Confidence            33456667788999999999999776 233333 356777777776666555444443

This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).

>PRK12884 ubiA prenyltransferase; Reviewed

Probab=84.41  E-value=8  Score=36.40  Aligned_cols=49  Identities=18%  Similarity=0.141  Sum_probs=33.7

Q ss_pred             HHHHHHHHHHHhcCCChhhhhhcCCccchhhhC---hHHHHHHHHHHHHHHHH
Q 020838          211 MSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLG---QKRVFWTCISLLEVAYT  260 (320)
Q Consensus       211 ~~~f~~~i~i~KDi~DieGDr~~Gi~Tlpv~lG---~k~a~~la~~ll~~~y~  260 (320)
                      ..+...+-.+++|+.|.|-|+++ -+.=|+.-|   ++.+..++..+..++.+
T Consensus        46 ~~l~~~a~~~~Nd~~D~~~D~~~-r~~Rpl~~G~is~~~a~~~~~~~~~~~~~   97 (279)
T PRK12884         46 AFFASGSANALNDYFDYEVDRIN-RPDRPIPSGRISRREALLLAILLFILGLI   97 (279)
T ss_pred             HHHHHHHHHHHHhhhhHhhhhcc-CCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence            44555667899999999999988 455666656   56666666555544433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	320
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 2e-04
 Identities = 25/113 (22%), Positives = 44/113 (38%), Gaps = 22/113 (19%)

Query: 24  DRTTVVKLERY---HLKHHIRGAKD-------RSIY------HQKIKIKHLANAASGHPL 67
           D      L++Y   H+ HH++  +        R ++       QKI+    A  ASG  L
Sbjct: 462 DDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSIL 521

Query: 68  QS-NQPDDYK----PKSPLNS-VINALDAFYRFSRPHTVIGTALSIVSVALLA 114
            +  Q   YK       P    ++NA+  F      + +      ++ +AL+A
Sbjct: 522 NTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMA 574

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00