Citrus Sinensis ID: 020870

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320
Protein Sequence
MAVNHLCQWQYLRFQLSHPSAPACRYLSPSRSKSSTSSTAKVNCSAAPSSSPMDSHNEGRKKFMEFPYASGPVRQLMVDLVSTVENTLDSQLLPCTLPPDVQYYENQNGTAQASLQIRSGLKSSLIDFILGSWVHSELPTGAALNITSLSAYLNSSTDAPNLLIELIQSSPSSLVLILDLSPRKDLVLHPDYLQTFYESTRLDEYRQMLEKVPEVRPYFSSSLYLRCVISPSAIMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQCAYLEKRDGLIKNKTIEIDLGSSFPRLFGPQVASRVLGEIQKVFTA
Secondary Structure (PSIPRED)
cccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccEEEEEEEEccccccccEEEEEcccccccccccccccHHHHHHccccccccHHHHHHHHcccccEEEEEEccccccccccHHHHHHHHccccHHHHHHHHHHcccccccccccccEEEcccccEEEEEEEcccccccccccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccHEEEcccccHHHHHHHHHHHHHHHHHHccccccccccccHHHcccccccEEEEEEEEcccccccccEEEEEHccccccccccEEEEEEEEEcccccccccEEEEEEccccccEEEEEcccccccccccHHHHHHHHccccHHHHHHHHHHcccccccccccEEEEEEccccEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEccccccHHHccHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MAVNHLCQWQYLRfqlshpsapacrylspsrsksstsstakvncsaapssspmdshnegrkkfmefpyasgpvRQLMVDLVSTVENtldsqllpctlppdvqyyenqngtaQASLQIRSGLKSSLIDFILgswvhselptgaalNITSLSAYLNSSTDAPNLLIELIQSSPSSLVLIldlsprkdlvlhpdylqtfyestRLDEYRQMLEkvpevrpyfssslylrcvispsaimvrvdtetetgagestrlDYIITNHVHPVAKQVIGIWLNQCAYLEKRDGLIKNKTIeidlgssfprlfgpqvASRVLGEIQKVFTA
Flexible Loop (DISEMBL)
MAVNHLCQWQYLRFQLSHPSAPACRYLSPsrsksstsstakvncsaapssspmdshNEGRKKFMEFPYASGPVRQLMVDLVSTVENTLDSQLLPCTLPPDVQYYENQNGTAQASLQIRSGLKSSLIDFILGSWVHSELPTGAALNITSLSAYLNSSTDAPNLLIELIQSSPSSLVLILDLSPRKDLVLHPDYLQTFYESTRLDEYRQMLEKVPEVRPYFSSSLYLRCVISPSAIMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQCAYLEKRDGLIKNKTIeidlgssfprlfgpqvaSRVLGEIQKVFTA
Low Complexity Region (SEG)
MAVNHLCQWQYLRFQLSHPSAPACRYLspsrsksstssTAKVNCSAAPSSSPMDSHNEGRKKFMEFPYASGPVRQLMVDLVSTVENTLDSQLLPCTLPPDVQYYENQNGTAQASLQIRSGLKSSLIDFILGSWVHSELPTGAALNITSLSAYLNSSTDAPNLLIELIQSSPSSLVLILDLSPRKDLVLHPDYLQTFYESTRLDEYRQMLEKVPEVRPYFSSSLYLRCVISPSAIMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQCAYLEKRDGLIKNKTIEIDLGSSFPRLFGPQVASRVLGEIQKVFTA
Disordered region (IsUnstruct)
*****************************************************************FPYASGPVRQLMVDLVSTVENTLDSQLLPCTLPPDVQYYENQNGTAQASLQIRSGLKSSLIDFILGSWVHSELPTGAALNITSLSAYLNSSTDAPNLLIELIQSSPSSLVLILDLSPRKDLVLHPDYLQTFYESTRLDEYRQMLEKVPEVRPYFSSSLYLRCVISPSAIMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQCAYLEKRDGLIKNKTIEIDLGSSFPRLFGPQVASRVLGEIQ*****
Disordered Region (DISOPRED)
***NHLCQWQYLRFQLSHPSAP*******************************************FPYASGPVRQLMVDLVSTVENTLDSQLLPCTLPPDVQYYEN*****Q*SLQIRSGLKSSLIDFILGSWVHSELPTGAALNITSLSAYLNSSTDAPNLLIELIQSSPSSLVLILDLSPRKDLVLHPDYLQTFYESTRLDEYRQMLEKVPEVRPYFSSSLYLRCVISPSAIMVRVDTET*******TRLDYIITNHVHPVAKQVIGIWLNQCAYLEKRDGLIKNKTIEIDLGSSFPRLFGPQVASRVLGEIQKVFTA
Disordered Region (DISEMBL)
MAVNHLCQWQYLRFQLSHPSAPA**********************************EGRKKFMEFPYASGPVRQLMVDLVSTVENTLDSQLLPCTLPPDVQYYENQNGTAQASLQIRSGLKSSLIDFILGSWVHSELPTGAALNITSLSAYLNSSTDAPNLLIELIQSSPSSLVLILDLSPRKDLVLHPDYLQTFYESTRLDEYRQMLEKVPEVRPYFSSSLYLRCVISPSAIMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQCAYLEKRDGLIKNKTIEIDLGSSFPRLFGPQVASRVLGEIQKVFTA
Disordered Region (DISPRO)
*AVNHLCQWQYLRFQLSHPS****************************************KKFMEFPYASGPVRQLMVDLVSTVENTLDSQLLPCTLPPDVQYYENQNGTAQASLQIRSGLKSSLIDFILGSWVHSELPTGAALNITSLSAYLNSSTDAPNLLIELIQSSPSSLVLILDLSPRKDLVLHPDYLQTFYESTRLDEYRQMLEKVPEVRPYFSSSLYLRCVISPSAIMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQCAYLEKRDGLIKNKTIEIDLGSSFPRLFGPQVASRVLGEIQKVFTA
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAVNHLCQWQYLRFQLSHPSAPACRYLSPSRSKSSTSSTAKVNCSAAPSSSPMDSHNEGRKKFMEFPYASGPVRQLMVDLVSTVENTLDSQLLPCTLPPDVQYYENQNGTAQASLQIRSGLKSSLIDFILGSWVHSELPTGAALNITSLSAYLNSSTDAPNLLIELIQSSPSSLVLILDLSPRKDLVLHPDYLQTFYESTRLDEYRQMLEKVPEVRPYFSSSLYLRCVISPSAIMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQCAYLEKRDGLIKNKTIEIDLGSSFPRLFGPQVASRVLGEIQKVFTA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	320	2.2.26 [Sep-21-2011]
Q8LDU4	319	Red chlorophyll catabolit	yes	no	0.812	0.815	0.528	4e-80
Q9MTQ6	205	Red chlorophyll catabolit	N/A	no	0.587	0.917	0.429	9e-47

>sp|Q8LDU4|RCCR_ARATH Red chlorophyll catabolite reductase, chloroplastic OS=Arabidopsis thaliana GN=RCCR PE=1 SV=2

 Score =  298 bits (763), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 149/282 (52%), Positives = 198/282 (70%), Gaps = 22/282 (7%)

Query: 53  MDSHNEG-RKKFMEFPYASGPVRQLMVDLVSTVENTLDSQLLPCTLPPDVQYYENQNGTA 111
           M+ H++  R+KFMEFPY S   +QLMVDL+STVEN L SQLLPC LPPDV+ + N NG+A
Sbjct: 41  MEDHDDHLRRKFMEFPYVSPTRKQLMVDLMSTVENRLQSQLLPCNLPPDVRNFNNPNGSA 100

Query: 112 QASLQIRSGLKSSLIDFILGSWVHSELPTGAALNITSLSAYLNSSTDAPNLLIELIQSSP 171
           +ASL IRSG KSS IDF++GSW+H ++PTG +LNITS+S +LNSST APN ++ELIQSS 
Sbjct: 101 EASLHIRSGDKSSPIDFVIGSWIHCKIPTGVSLNITSISGFLNSSTKAPNFVVELIQSSS 160

Query: 172 SSLVLILDLSPRKDLVLHPDYLQTFYESTRLDEYRQMLEKVPEVRPYFSSSLYLRCVISP 231
            SLVLILDL  RKDLVL+PDYL+ +Y+ T LD +RQ L K+PEV PY S SL++R   SP
Sbjct: 161 KSLVLILDLPHRKDLVLNPDYLKEYYQDTALDSHRQSLLKLPEVNPYVSPSLFVRSAFSP 220

Query: 232 SAIMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQCAYLEKR---------- 281
           +A M+++D E      E  +L+ I+ +HV P AK+V+ +WL +C   E+           
Sbjct: 221 TASMLKIDAE------EEDKLEEILRDHVSPAAKEVLEVWLERCVKEEEEKIVVGEEERM 274

Query: 282 -----DGLIKNKTIEIDLGSSFPRLFGPQVASRVLGEIQKVF 318
                D   + K+IE DL   FPR+FG +V+SRV+  I++ F
Sbjct: 275 ELERRDKSFRRKSIEDDLDLQFPRMFGEEVSSRVVHAIKEAF 316

Catalyzes the key reaction of chlorophyll catabolism, porphyrin macrocycle cleavage of pheophorbide a (pheide a) to a primary fluorescent catabolite (pFCC). Works in a two-step reaction with pheophorbide a oxygenase (PaO) by reducing the C20/C1 double bond of the intermediate, RCC.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 3EC: .EC: 1EC: .EC: 8EC: 0

>sp|Q9MTQ6|RCCR_HORVU Red chlorophyll catabolite reductase (Fragment) OS=Hordeum vulgare GN=rccR PE=2 SV=1

 Score =  187 bits (475), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 88/205 (42%), Positives = 138/205 (67%), Gaps = 17/205 (8%)

Query: 126 IDFILGSWVHSELPTGAALNITSLSAYLNSSTDAPNLLIELIQSSPSSLVLILDLSPRKD 185
           IDF+L S +H ++P GA ++ITSL   LN+STDAP+ ++E IQ SP+S+V++LDL PRKD
Sbjct: 1   IDFMLQSSLHCKVPNGA-IDITSLFINLNASTDAPHFIMEFIQGSPTSMVVLLDLLPRKD 59

Query: 186 LVLHPDYLQTFYESTRLDEYRQMLEKVPEVRPYFSSSLYLRCVISPSAIMVRVDTETETG 245
           L LHP+Y++ +YE T +D+ R+++E++P+ RPY S SL++R   SP+A+   +D     G
Sbjct: 60  LALHPEYIEKYYEDTEVDKQRKIIEQLPQARPYLSPSLFVRSAFSPTAVFFTID----CG 115

Query: 246 AGESTRLDYIITNHVHPVAKQVIGIWLNQCA------------YLEKRDGLIKNKTIEID 293
            G    L+ I+  H+  V K ++ IWL+ CA             + KRD  +++K+IE+D
Sbjct: 116 KGGEGTLEEIVHGHLASVVKGILQIWLDTCASDASEMEEGEREIMVKRDRTVRSKSIEVD 175

Query: 294 LGSSFPRLFGPQVASRVLGEIQKVF 318
           L ++ PR+FGP V+ R++ EI+K F
Sbjct: 176 LTANLPRMFGPDVSGRIIAEIRKAF 200

Catalyzes the key reaction of chlorophyll catabolism, porphyrin macrocycle cleavage of pheophorbide a (pheide a) to a primary fluorescent catabolite (pFCC). Works in a two-step reaction with pheophorbide a oxygenase (PaO) by reducing the C20/C1 double bond of the intermediate, RCC.

Hordeum vulgare (taxid: 4513)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 8

EC: 0

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	320
225438706	322	PREDICTED: red chlorophyll catabolite re	0.840	0.835	0.652	1e-102
224094332	276	predicted protein [Populus trichocarpa]	0.821	0.952	0.637	1e-99
255565168	313	Red chlorophyll catabolite reductase, ch	0.821	0.840	0.634	4e-99
356552529	322	PREDICTED: red chlorophyll catabolite re	0.815	0.810	0.646	4e-98
147839733	359	hypothetical protein VITISV_028662 [Viti	0.840	0.749	0.578	5e-98
255645027	322	unknown [Glycine max]	0.815	0.810	0.646	9e-98
359806208	329	uncharacterized protein LOC100780934 [Gl	0.825	0.802	0.635	5e-97
357495121	277	Red chlorophyll catabolite reductase [Me	0.825	0.953	0.601	6e-96
162568920	314	putative red chlorophyll catabolite redu	0.85	0.866	0.608	2e-95
106880168	313	red chlorophyll catabolite reductase [So	0.837	0.856	0.612	3e-93

>gi|225438706|ref|XP_002277744.1| PREDICTED: red chlorophyll catabolite reductase, chloroplastic [Vitis vinifera] gi|296082425|emb|CBI21430.3| unnamed protein product [Vitis vinifera]

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 188/288 (65%), Positives = 224/288 (77%), Gaps = 19/288 (6%)

Query: 46  AAPSSSPM---DSHNEGRKKFMEFPYASGPVRQLMVDLVSTVENTLDSQLLPCTLPPDVQ 102
           AA SSSP      +  GR +FMEFP+ S P R LMV+LVS VE  LDS LLPCTLPPDVQ
Sbjct: 38  AASSSSPSLTDPQYGGGRSRFMEFPHVSAPHRDLMVELVSAVEARLDSYLLPCTLPPDVQ 97

Query: 103 YYENQNGTAQASLQIRSGLKSSLIDFILGSWVHSELPTGAALNITSLSAYLNSSTDAPNL 162
           YYENQ+GTAQA+L +RSG  SS IDF+LGSW+H +LP+G ALNITSLS YLN STDAPN 
Sbjct: 98  YYENQSGTAQATLHVRSGHDSSPIDFVLGSWIHCQLPSGGALNITSLSTYLNPSTDAPNF 157

Query: 163 LIELIQSSPSSLVLILDLSPRKDLVLHPDYLQTFYESTRLDEYRQMLEKVPEVRPYFSSS 222
           LIELI+SSP+SLVLILDL PRKDL LHPDYLQTFYE T+L+  RQ+LEK+PE +PYFSSS
Sbjct: 158 LIELIRSSPTSLVLILDLPPRKDLALHPDYLQTFYEDTKLESRRQLLEKIPESQPYFSSS 217

Query: 223 LYLRCVISPSAIMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQCA------ 276
           LY+RC++SP+AIM R++TE    AG   R++ I+ +HV PVA +V+GIWL+QCA      
Sbjct: 218 LYIRCIVSPTAIMTRIETE----AGGVERMEEILQSHVGPVAMEVLGIWLDQCAFGEREV 273

Query: 277 ------YLEKRDGLIKNKTIEIDLGSSFPRLFGPQVASRVLGEIQKVF 318
                 YLEKRD LI++KTIEIDLGSS PRLFGP+ A RVL  ++ VF
Sbjct: 274 GDSEISYLEKRDRLIRSKTIEIDLGSSLPRLFGPETAGRVLEAMRGVF 321

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224094332|ref|XP_002310143.1| predicted protein [Populus trichocarpa] gi|118486991|gb|ABK95327.1| unknown [Populus trichocarpa] gi|222853046|gb|EEE90593.1| predicted protein [Populus trichocarpa]

 Score =  369 bits (947), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 178/279 (63%), Positives = 221/279 (79%), Gaps = 16/279 (5%)

Query: 53  MDSHNEGRKKFMEFPYASGPVRQLMVDLVSTVENTLDSQLLPCTLPPDVQYYENQNGTAQ 112
           MD HN+GR+KF+EFP+ S P R LMV+L+STVE+ L S LLPCTLP DVQ+ +N++G+AQ
Sbjct: 1   MDLHNQGRQKFIEFPFVSAPHRDLMVNLLSTVEDRLGSHLLPCTLPLDVQHCQNESGSAQ 60

Query: 113 ASLQIRSGLKSSLIDFILGSWVHSELPTGAALNITSLSAYLNSSTDAPNLLIELIQSSPS 172
           ASL IRSGL+SS +DFILGSW+H +LPTG ALNITSLSAYLN STDAPN +IELIQSSP+
Sbjct: 61  ASLHIRSGLQSSQVDFILGSWLHCKLPTGGALNITSLSAYLNPSTDAPNFMIELIQSSPT 120

Query: 173 SLVLILDLSPRKDLVLHPDYLQTFYESTRLDEYRQMLEKVPEVRPYFSSSLYLRCVISPS 232
           SLV ILDL PRKD VL PDYLQTFYE+T+LD +RQML K+PEV+PY SSSLYLR V+SP+
Sbjct: 121 SLVFILDLPPRKDPVLSPDYLQTFYENTQLDTHRQMLAKLPEVQPYVSSSLYLRSVLSPT 180

Query: 233 AIMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQC------------AYLEK 280
            +M+++  +    AG   R++ I+ NH+ P A++V+GIWL+ C            AY+ K
Sbjct: 181 VVMIQIGAQ----AGGPERMEEIVKNHIDPTAQEVLGIWLDHCARGERLVGEEEKAYMMK 236

Query: 281 RDGLIKNKTIEIDLGSSFPRLFGPQVASRVLGEIQKVFT 319
           RD LIK KTIEIDLG++FPRLFGP+V  RVLG IQKV+ 
Sbjct: 237 RDELIKKKTIEIDLGTNFPRLFGPEVTDRVLGAIQKVYN 275

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255565168|ref|XP_002523576.1| Red chlorophyll catabolite reductase, chloroplast precursor, putative [Ricinus communis] gi|223537138|gb|EEF38771.1| Red chlorophyll catabolite reductase, chloroplast precursor, putative [Ricinus communis]

 Score =  367 bits (942), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 177/279 (63%), Positives = 222/279 (79%), Gaps = 16/279 (5%)

Query: 53  MDSHNEGRKKFMEFPYASGPVRQLMVDLVSTVENTLDSQLLPCTLPPDVQYYENQNGTAQ 112
           M+ HN+GR +F+EFP+ S P R+LMVDL+S VEN L SQLLPCTLPPDVQY  NQ+G AQ
Sbjct: 38  MELHNQGRSRFLEFPFVSVPQRELMVDLLSAVENRLGSQLLPCTLPPDVQYCRNQSGNAQ 97

Query: 113 ASLQIRSGLKSSLIDFILGSWVHSELPTGAALNITSLSAYLNSSTDAPNLLIELIQSSPS 172
           A+  IRS  ++S +DFILGSW+H +LPTGAALNITSLSAYLN STDAPN LIELIQSSP+
Sbjct: 98  AAFHIRSANQNSPVDFILGSWLHCKLPTGAALNITSLSAYLNLSTDAPNFLIELIQSSPT 157

Query: 173 SLVLILDLSPRKDLVLHPDYLQTFYESTRLDEYRQMLEKVPEVRPYFSSSLYLRCVISPS 232
           SLVLI+DL PRKDLVL+PDYLQTFYE+++L+ +RQ L+K+ EV+PY +SSLYLR  +SP+
Sbjct: 158 SLVLIIDLPPRKDLVLYPDYLQTFYENSQLEAHRQTLQKLKEVQPYVTSSLYLRSFLSPT 217

Query: 233 AIMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQC------------AYLEK 280
           AIM+ V+TE    AGES R++ II + V PVAK V G+WL++C            AYL+K
Sbjct: 218 AIMILVETE----AGESGRMEEIIKDQVGPVAKAVFGVWLDKCACGGREVEEEEKAYLKK 273

Query: 281 RDGLIKNKTIEIDLGSSFPRLFGPQVASRVLGEIQKVFT 319
           RD L+K K IEIDL S+FPR+FGP++A R+LG IQK++ 
Sbjct: 274 RDELVKKKIIEIDLASNFPRMFGPELADRILGAIQKIYN 312

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356552529|ref|XP_003544619.1| PREDICTED: red chlorophyll catabolite reductase, chloroplastic-like [Glycine max]

 Score =  363 bits (933), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 179/277 (64%), Positives = 219/277 (79%), Gaps = 16/277 (5%)

Query: 56  HNEGRKKFMEFPYASGPVRQLMVDLVSTVENTLDSQLLPCTLPPDVQYYENQNGTAQASL 115
           +N+GR KFM+FP+ S   + LMVDLVST+EN   +QLLPCTLP DVQYY++Q  TAQASL
Sbjct: 50  NNQGRSKFMDFPFVSSAQKNLMVDLVSTLENRFHTQLLPCTLPSDVQYYQSQTATAQASL 109

Query: 116 QIRSGLKSSLIDFILGSWVHSELPTGAALNITSLSAYLNSSTDAPNLLIELIQSSPSSLV 175
            IR+    S IDF+LGSWVHSELPTG +L+ITSLSAYLNSSTDAPN + E+I+SSP+ L+
Sbjct: 110 HIRAAHNDSPIDFVLGSWVHSELPTGGSLDITSLSAYLNSSTDAPNFVFEMIRSSPTMLL 169

Query: 176 LILDLSPRKDLVLHPDYLQTFYESTRLDEYRQMLEKVPEVRPYFSSSLYLRCVISPSAIM 235
           LILDL PRKDLVL PD L+TFYE T+LD++RQ LE+VPEV+PYFSSSLY+R V SP+AIM
Sbjct: 170 LILDLPPRKDLVLWPDDLKTFYEDTQLDKHRQTLERVPEVQPYFSSSLYIRTVSSPTAIM 229

Query: 236 VRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQC------------AYLEKRDG 283
           VRV TE     G   R++ II +H+ P++KQV+GIWL+ C            AYL+KRDG
Sbjct: 230 VRVLTEN----GGVERMEEIIRDHLDPISKQVLGIWLDHCACAKREVGEAERAYLKKRDG 285

Query: 284 LIKNKTIEIDLGSSFPRLFGPQVASRVLGEIQKVFTA 320
           LI+NKTIEIDLGSSFPRLFGP+VA+RVL  I++ FT 
Sbjct: 286 LIRNKTIEIDLGSSFPRLFGPEVANRVLEAIKEYFTV 322

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147839733|emb|CAN61781.1| hypothetical protein VITISV_028662 [Vitis vinifera]

 Score =  363 bits (933), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 188/325 (57%), Positives = 225/325 (69%), Gaps = 56/325 (17%)

Query: 46  AAPSSSPM---DSHNEGRKKFMEFPYASGPVRQLMVDLVSTVENTLDSQLLPCTLPPDVQ 102
           AA SSSP      +  GR +FMEFP+ S P R LMV+LVS VE  LDS LLPCTLPPDVQ
Sbjct: 38  AASSSSPSLTDPQYGGGRSRFMEFPHVSAPHRDLMVELVSAVEARLDSYLLPCTLPPDVQ 97

Query: 103 YYENQNGTAQASLQIRSGLKSS-------------------------------------L 125
           YYENQ+GTAQA+L +RSG  SS                                      
Sbjct: 98  YYENQSGTAQATLHVRSGXDSSPVSIYSTTAIFIHLIVNIFAQDEQLGMELSEPGSTLNK 157

Query: 126 IDFILGSWVHSELPTGAALNITSLSAYLNSSTDAPNLLIELIQSSPSSLVLILDLSPRKD 185
           IDF+LGSW+H +LP+G ALNITSLS YLN STDAPN LIELI+SSP+SLVLILDL PRKD
Sbjct: 158 IDFVLGSWIHCQLPSGGALNITSLSTYLNPSTDAPNFLIELIRSSPTSLVLILDLPPRKD 217

Query: 186 LVLHPDYLQTFYESTRLDEYRQMLEKVPEVRPYFSSSLYLRCVISPSAIMVRVDTETETG 245
           L LHPDYLQTFYE T+L+  RQ+LEK+PE +PYFSSSLY+RC++SP+AJM R++TE    
Sbjct: 218 LALHPDYLQTFYEDTKLESRRQLLEKIPESQPYFSSSLYIRCIVSPTAJMTRIETE---- 273

Query: 246 AGESTRLDYIITNHVHPVAKQVIGIWLNQCA------------YLEKRDGLIKNKTIEID 293
           AG   R++ I+ +HV PVAK+V+GIWL+QCA            YLEKRD LI++KTIEID
Sbjct: 274 AGGVERMEEILQSHVGPVAKEVLGIWLDQCAFGEREVGDSEISYLEKRDRLIRSKTIEID 333

Query: 294 LGSSFPRLFGPQVASRVLGEIQKVF 318
           LGSS PRLFGP+ A RVL  ++ VF
Sbjct: 334 LGSSLPRLFGPETAGRVLEAMRGVF 358

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255645027|gb|ACU23013.1| unknown [Glycine max]

 Score =  362 bits (930), Expect = 9e-98,   Method: Compositional matrix adjust.
 Identities = 179/277 (64%), Positives = 218/277 (78%), Gaps = 16/277 (5%)

Query: 56  HNEGRKKFMEFPYASGPVRQLMVDLVSTVENTLDSQLLPCTLPPDVQYYENQNGTAQASL 115
           +N+GR KFM+FP+ S   + LMVDLVST+EN   +QLLPCTLP DVQYY++Q  TAQASL
Sbjct: 50  NNQGRSKFMDFPFVSSAQKNLMVDLVSTLENRFHTQLLPCTLPSDVQYYQSQTATAQASL 109

Query: 116 QIRSGLKSSLIDFILGSWVHSELPTGAALNITSLSAYLNSSTDAPNLLIELIQSSPSSLV 175
            IR+    S IDF+LGSWVHSELPTG +L+ITSLSAYLNSSTDAPN + E+I+SSP+ L+
Sbjct: 110 HIRAAHNDSPIDFVLGSWVHSELPTGGSLDITSLSAYLNSSTDAPNFVFEMIRSSPTMLL 169

Query: 176 LILDLSPRKDLVLHPDYLQTFYESTRLDEYRQMLEKVPEVRPYFSSSLYLRCVISPSAIM 235
           LILDL PRKDLVL PD L+TFYE T+LD++RQ LE+VPEV+PYFSSSLY+R V SP+AIM
Sbjct: 170 LILDLPPRKDLVLWPDDLKTFYEDTQLDKHRQTLERVPEVQPYFSSSLYIRTVSSPTAIM 229

Query: 236 VRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQC------------AYLEKRDG 283
           VRV TE     G   R++ II +H+ P++KQV+GIWL+ C            AYL+KRDG
Sbjct: 230 VRVLTEN----GGVERMEEIIRDHLDPISKQVLGIWLDHCACAKREVGEAERAYLKKRDG 285

Query: 284 LIKNKTIEIDLGSSFPRLFGPQVASRVLGEIQKVFTA 320
           LI NKTIEIDLGSSFPRLFGP+VA+RVL  I++ FT 
Sbjct: 286 LITNKTIEIDLGSSFPRLFGPEVANRVLEAIKEYFTV 322

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806208|ref|NP_001240950.1| uncharacterized protein LOC100780934 [Glycine max] gi|255639043|gb|ACU19822.1| unknown [Glycine max]

 Score =  360 bits (924), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 178/280 (63%), Positives = 217/280 (77%), Gaps = 16/280 (5%)

Query: 53  MDSHNEGRKKFMEFPYASGPVRQLMVDLVSTVENTLDSQLLPCTLPPDVQYYENQNGTAQ 112
           M++    R KFM+FP+ S   + LMVDLVST+EN   SQLLPCTLP DVQYY++Q  TAQ
Sbjct: 54  MENQETQRSKFMDFPFVSSAQKNLMVDLVSTLENRFHSQLLPCTLPSDVQYYQSQTATAQ 113

Query: 113 ASLQIRSGLKSSLIDFILGSWVHSELPTGAALNITSLSAYLNSSTDAPNLLIELIQSSPS 172
           ASL IR     S IDF+LGSWVHSELPTG +L+ITSLSAYLNSSTDAPN + E+I+SSP+
Sbjct: 114 ASLHIRPAHNDSQIDFVLGSWVHSELPTGGSLDITSLSAYLNSSTDAPNFVFEMIRSSPT 173

Query: 173 SLVLILDLSPRKDLVLHPDYLQTFYESTRLDEYRQMLEKVPEVRPYFSSSLYLRCVISPS 232
            LVLILDL PRKDLVL PD L+TFYE T+LD++RQ L++VPEV+PYFSSSLY+R V SP+
Sbjct: 174 MLVLILDLPPRKDLVLWPDDLKTFYEDTQLDKHRQALDRVPEVQPYFSSSLYIRTVSSPT 233

Query: 233 AIMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQC------------AYLEK 280
           AIMVR+ TE     G   R++ II +H+ P++KQV+GIWL+ C            AYL+K
Sbjct: 234 AIMVRILTEN----GGVERMEEIIRDHLDPISKQVLGIWLDHCACAKRQVGEAERAYLKK 289

Query: 281 RDGLIKNKTIEIDLGSSFPRLFGPQVASRVLGEIQKVFTA 320
           RDGLI+NKTIEIDLGSSFPRLFGP+VA+RVL  I++ FT 
Sbjct: 290 RDGLIRNKTIEIDLGSSFPRLFGPEVANRVLDAIKEYFTV 329

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357495121|ref|XP_003617849.1| Red chlorophyll catabolite reductase [Medicago truncatula] gi|355519184|gb|AET00808.1| Red chlorophyll catabolite reductase [Medicago truncatula]

 Score =  357 bits (915), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 169/281 (60%), Positives = 217/281 (77%), Gaps = 17/281 (6%)

Query: 53  MDSHN-EGRKKFMEFPYASGPVRQLMVDLVSTVENTLDSQLLPCTLPPDVQYYENQNGTA 111
           MD+   +GR KF+EFP+ S P + LM+DLVSTVE+  +S LLPC+LPPDVQYY+++NGT+
Sbjct: 1   MDTQKKQGRSKFLEFPFVSAPHKNLMLDLVSTVEDRFESHLLPCSLPPDVQYYKSKNGTS 60

Query: 112 QASLQIRSGLKSSLIDFILGSWVHSELPTGAALNITSLSAYLNSSTDAPNLLIELIQSSP 171
           Q SL IR     S IDF++GSWVH+ELPTG +L+ITSLSAYLNSS DAPN + ELI+SSP
Sbjct: 61  QVSLHIRPSNTDSPIDFVMGSWVHAELPTGGSLDITSLSAYLNSSNDAPNFVFELIRSSP 120

Query: 172 SSLVLILDLSPRKDLVLHPDYLQTFYESTRLDEYRQMLEKVPEVRPYFSSSLYLRCVISP 231
           + L+L+LDL PRKDLVL PDYL+TFYE T+LD ++Q LEK+PEV+PY +SSL++R V SP
Sbjct: 121 TMLILVLDLPPRKDLVLWPDYLKTFYEDTKLDTHKQALEKIPEVQPYITSSLFIRSVASP 180

Query: 232 SAIMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQC------------AYLE 279
           +AI VR+ TE + G     R+D II NH+ PV+KQV+GIWL+ C            AYL 
Sbjct: 181 TAIFVRIQTENDEGE----RIDEIIKNHIDPVSKQVLGIWLDHCACAEREVGEEDKAYLI 236

Query: 280 KRDGLIKNKTIEIDLGSSFPRLFGPQVASRVLGEIQKVFTA 320
           KRDG+I+NKTIE+DLGSSFPRLFGP+ A ++L  I++ FT 
Sbjct: 237 KRDGVIRNKTIEVDLGSSFPRLFGPEAAKQILEAIKEYFTV 277

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|162568920|gb|ABY19386.1| putative red chlorophyll catabolite reductase [Nicotiana tabacum]

 Score =  354 bits (909), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 177/291 (60%), Positives = 220/291 (75%), Gaps = 19/291 (6%)

Query: 42  VNCSAAPSSSPMDSHNEGRKKFMEFPYASGPVRQLMVDLVSTVENTLDSQLLPCTLPPDV 101
           ++CS   SS  M+  NE + K  EFPY S P R+LMV+L+STVEN L + LLPCTLP +V
Sbjct: 31  LSCS---SSKYMEQQNENKSKLKEFPYVSVPHRELMVELISTVENRLGTALLPCTLPTNV 87

Query: 102 QYYENQNGTAQASLQIRSGLKSSLIDFILGSWVHSELPTGAALNITSLSAYLNSSTDAPN 161
           QY+EN   TA ASL +RSG  SS +DFILGSWVH  LPTG ALNITSLSAYL  STDAPN
Sbjct: 88  QYFENSTATAHASLYVRSGHSSSQVDFILGSWVHCNLPTGGALNITSLSAYLRPSTDAPN 147

Query: 162 LLIELIQSSPSSLVLILDLSPRKDLVLHPDYLQTFYESTRLDEYRQMLEKVPEVRPYFSS 221
            LIE+I+SSP+SL+LILDL PRKDLV HPDYL+TFYE T+LDE RQ+LEK+PEV+PYFSS
Sbjct: 148 FLIEVIRSSPTSLILILDLPPRKDLVQHPDYLKTFYEETQLDEQRQLLEKLPEVKPYFSS 207

Query: 222 SLYLRCVISPSAIMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQCA----- 276
           SLY+R V+SPSAI+V ++TE    A ++ R+D II +H+ PVAK ++  WL+ CA     
Sbjct: 208 SLYIRAVVSPSAILVSIETE----ASQAVRIDEIIQDHISPVAKVMLETWLDLCACAERK 263

Query: 277 -------YLEKRDGLIKNKTIEIDLGSSFPRLFGPQVASRVLGEIQKVFTA 320
                   L KRD +IKNKTIEIDL SSFPRLFG +VA++VL  +++++ A
Sbjct: 264 LTEDESTALAKRDKIIKNKTIEIDLESSFPRLFGQEVANKVLVVLREIYNA 314

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|106880168|emb|CAJ80766.1| red chlorophyll catabolite reductase [Solanum lycopersicum]

 Score =  347 bits (891), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 177/289 (61%), Positives = 218/289 (75%), Gaps = 21/289 (7%)

Query: 44  CSAAPSSSPMDSHNEGRKKFMEFPYASGPVRQLMVDLVSTVENTLDSQLLPCTLPPDVQY 103
           CS+  SS+ M+ H     KF EFPYAS P R+LMV+LVSTVEN L   LLPCTLP  VQY
Sbjct: 34  CSS--SSTSMEHH---ESKFKEFPYASVPHRELMVELVSTVENRLGESLLPCTLPSHVQY 88

Query: 104 YENQNGTAQASLQIRSGLKSSLIDFILGSWVHSELPTGAALNITSLSAYLNSSTDAPNLL 163
           +EN++ TA ASL +RSG  SS +DFILGSWVH  LPTG ALNITSLS YL  STDAPN L
Sbjct: 89  FENESATAHASLYVRSGNSSSQVDFILGSWVHCNLPTGGALNITSLSVYLRPSTDAPNFL 148

Query: 164 IELIQSSPSSLVLILDLSPRKDLVLHPDYLQTFYESTRLDEYRQMLEKVPEVRPYFSSSL 223
           IE+IQSSP++L+LILDL PRKDLV HPDYL+TFYE T+LD+ RQ+LEK+PEV+PYFSSSL
Sbjct: 149 IEVIQSSPTTLILILDLPPRKDLVQHPDYLKTFYEETQLDKQRQLLEKLPEVKPYFSSSL 208

Query: 224 YLRCVISPSAIMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQCAYLE---- 279
           Y+R ++SPSAI+V +    ET   ++ R+D II +H+ PVAK ++  WLN CA  E    
Sbjct: 209 YIRALVSPSAILVSI----ETDPSQAIRIDEIIQDHISPVAKVMLDTWLNLCACTERRLT 264

Query: 280 --------KRDGLIKNKTIEIDLGSSFPRLFGPQVASRVLGEIQKVFTA 320
                   KRD +IKNKTIEIDL SSFPRLFG QVA++VLG +++++ +
Sbjct: 265 DDESKDLAKRDQIIKNKTIEIDLESSFPRLFGQQVANQVLGVLREIYNS 313

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	320
TAIR|locus:2115105	319	ACD2 "ACCELERATED CELL DEATH 2	0.812	0.815	0.535	2.8e-73

TAIR|locus:2115105 ACD2 "ACCELERATED CELL DEATH 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 740 (265.6 bits), Expect = 2.8e-73, P = 2.8e-73
 Identities = 151/282 (53%), Positives = 200/282 (70%)

Query:    53 MDSHNEG-RKKFMEFPYASGPVRQLMVDLVSTVENTLDSQLLPCTLPPDVQYYENQNGTA 111
             M+ H++  R+KFMEFPY S   +QLMVDL+STVEN L SQLLPC LPPDV+ + N NG+A
Sbjct:    41 MEDHDDHLRRKFMEFPYVSPTRKQLMVDLMSTVENRLQSQLLPCNLPPDVRNFNNPNGSA 100

Query:   112 QASLQIRSGLKSSLIDFILGSWVHSELPTGAALNITSLSAYLNSSTDAPNLLIELIQSSP 171
             +ASL IRSG KSS IDF++GSW+H ++PTG +LNITS+S +LNSST APN ++ELIQSS 
Sbjct:   101 EASLHIRSGDKSSPIDFVIGSWIHCKIPTGVSLNITSISGFLNSSTKAPNFVVELIQSSS 160

Query:   172 SSLVLILDLSPRKDLVLHPDYLQTFYESTRLDEYRQMLEKVPEVRPYFSSSLYLRCVISP 231
              SLVLILDL  RKDLVL+PDYL+ +Y+ T LD +RQ L K+PEV PY S SL++R   SP
Sbjct:   161 KSLVLILDLPHRKDLVLNPDYLKEYYQDTALDSHRQSLLKLPEVNPYVSPSLFVRSAFSP 220

Query:   232 SAIMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQCAY-------------- 277
             +A M+++D E      E  +L+ I+ +HV P AK+V+ +WL +C                
Sbjct:   221 TASMLKIDAE------EEDKLEEILRDHVSPAAKEVLEVWLERCVKEEEEKIVVGEEERM 274

Query:   278 -LEKRDGLIKNKTIEIDLGSSFPRLFGPQVASRVLGEIQKVF 318
              LE+RD   + K+IE DL   FPR+FG +V+SRV+  I++ F
Sbjct:   275 ELERRDKSFRRKSIEDDLDLQFPRMFGEEVSSRVVHAIKEAF 316


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.133   0.390    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      320       309   0.00079  116 3  11 22  0.40    34
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  606 (64 KB)
  Total size of DFA:  211 KB (2118 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  25.33u 0.17s 25.50t   Elapsed:  00:00:01
  Total cpu time:  25.33u 0.17s 25.50t   Elapsed:  00:00:01
  Start:  Fri May 10 13:12:33 2013   End:  Fri May 10 13:12:34 2013

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0015996 "chlorophyll catabolic process" evidence=RCA;IMP;TAS

GO:0051743 "red chlorophyll catabolite reductase activity" evidence=IDA;TAS

GO:0005739 "mitochondrion" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005829 "cytosol" evidence=RCA;IDA

GO:0009814 "defense response, incompatible interaction" evidence=IMP

GO:0043067 "regulation of programmed cell death" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0010304 "PSII associated light-harvesting complex II catabolic process" evidence=RCA

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA

GO:0016117 "carotenoid biosynthetic process" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8LDU4	RCCR_ARATH	1, ., 3, ., 1, ., 8, 0	0.5283	0.8125	0.8150	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.3.1	0.921

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	320
PLN02581	267	PLN02581, PLN02581, red chlorophyll catabolite red	1e-140
pfam06405	255	pfam06405, RCC_reductase, Red chlorophyll cataboli	1e-127

>gnl|CDD|215318 PLN02581, PLN02581, red chlorophyll catabolite reductase

 Score =  395 bits (1018), Expect = e-140
 Identities = 159/269 (59%), Positives = 204/269 (75%), Gaps = 16/269 (5%)

Query: 62  KFMEFPYASGPVRQLMVDLVSTVENTLDSQLLPCTLPPDVQYYENQNGTAQASLQIRSGL 121
           +F+EFP  S   R+LMVDL S VE  L S LLP +LPPDV+ ++NQ+G AQ SL IRSG 
Sbjct: 1   RFIEFPKVSPAHRELMVDLASAVEARLGSLLLPSSLPPDVRSFQNQSGNAQGSLHIRSGA 60

Query: 122 KSSLIDFILGSWVHSELPTGAALNITSLSAYLNSSTDAPNLLIELIQSSPSSLVLILDLS 181
           + S IDF+LGSW+H +LPTG ALNITSLSA+LN STDAP+ L+ELIQSSP+SLVLILDL 
Sbjct: 61  QGSKIDFVLGSWLHCKLPTGGALNITSLSAFLNPSTDAPHFLVELIQSSPTSLVLILDLP 120

Query: 182 PRKDLVLHPDYLQTFYESTRLDEYRQMLEKVPEVRPYFSSSLYLRCVISPSAIMVRVDTE 241
           PRKDLVLHPDYL+T+YE T+LD +RQ LEK+P+V+PY S SLY+R V+SP+AI+V++D E
Sbjct: 121 PRKDLVLHPDYLKTYYEDTQLDAHRQKLEKLPQVQPYVSPSLYVRSVVSPTAILVKIDCE 180

Query: 242 TETGAGESTRLDYIITNHVHPVAKQVIGIWLNQCA------------YLEKRDGLIKNKT 289
                G   RL+ I+ + V PVAK+V+ IWL+ CA            YLEKRD +I++K+
Sbjct: 181 ----EGGEERLEEIVRDQVAPVAKEVLEIWLDSCACLGREMEEEERAYLEKRDRMIRSKS 236

Query: 290 IEIDLGSSFPRLFGPQVASRVLGEIQKVF 318
           +E+DL S+ PRLFG +VA RV+  I+K F
Sbjct: 237 VEVDLSSNMPRLFGQEVADRVVAAIRKAF 265

Length = 267

>gnl|CDD|203437 pfam06405, RCC_reductase, Red chlorophyll catabolite reductase (RCC reductase)

 Score =  362 bits (931), Expect = e-127
 Identities = 154/257 (59%), Positives = 191/257 (74%), Gaps = 16/257 (6%)

Query: 74  RQLMVDLVSTVENTLDSQLLPCTLPPDVQYYENQNGTAQASLQIRSGLKSSLIDFILGSW 133
           R+LMV L S VE  L ++LLP T+PPDVQY+ENQ+GTA  SL +RSG  SS IDF+LGSW
Sbjct: 3   RELMVALASEVEARLGARLLPSTVPPDVQYFENQSGTAVGSLDVRSGAPSSPIDFMLGSW 62

Query: 134 VHSELPTGAALNITSLSAYLNSSTDAPNLLIELIQSSPSSLVLILDLSPRKDLVLHPDYL 193
           +H +LPTG ALNITSLS YLN STDAP+ L E IQSSP+SLVLILDL PRKDLVLHPDYL
Sbjct: 63  LHCKLPTGGALNITSLSVYLNPSTDAPHFLFEFIQSSPTSLVLILDLLPRKDLVLHPDYL 122

Query: 194 QTFYESTRLDEYRQMLEKVPEVRPYFSSSLYLRCVISPSAIMVRVDTETETGAGESTRLD 253
           + +YE T+LD+ RQ+LEK+PEVRPYFSSSLY+R V+SP+AI+V +  E     G   RL+
Sbjct: 123 KRYYEETQLDKQRQLLEKLPEVRPYFSSSLYVRSVVSPTAILVSIQCE----EGGEERLE 178

Query: 254 YIITNHVHPVAKQVIGIWLNQCA------------YLEKRDGLIKNKTIEIDLGSSFPRL 301
            I+  H+ P AK+V+ IWL  CA             LEKRD +++ K+IE+DL S+ PRL
Sbjct: 179 EIVRGHLAPTAKEVLDIWLELCAGGEREVEESEREALEKRDLIVRRKSIEVDLDSNLPRL 238

Query: 302 FGPQVASRVLGEIQKVF 318
           FG +VA RV+ EI+  F
Sbjct: 239 FGQEVADRVVAEIRGAF 255

This family consists of several red chlorophyll catabolite reductase (RCC reductase) proteins. Red chlorophyll catabolite (RCC) reductase (RCCR) and pheophorbide (Pheide) a oxygenase (PaO) catalyze the key reaction of chlorophyll catabolism, porphyrin macrocycle cleavage of Pheide a to a primary fluorescent catabolite (pFCC). Length = 255

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	320
PLN02581	267	red chlorophyll catabolite reductase	100.0
PF06405	255	RCC_reductase: Red chlorophyll catabolite reductas	100.0
PRK13248	253	phycoerythrobilin:ferredoxin oxidoreductase; Provi	98.84
PRK13247	238	dihydrobiliverdin:ferredoxin oxidoreductase; Provi	98.83
PRK13249	257	phycoerythrobilin:ferredoxin oxidoreductase; Provi	98.63
PF05996	228	Fe_bilin_red: Ferredoxin-dependent bilin reductase	98.56
PRK02816	243	phycocyanobilin:ferredoxin oxidoreductase; Validat	98.55
PRK13250	248	phycoerythrobilin:ferredoxin oxidoreductase; Provi	98.54
PRK13246	236	dihydrobiliverdin:ferredoxin oxidoreductase; Provi	98.13

>PLN02581 red chlorophyll catabolite reductase

Probab=100.00  E-value=5.6e-127  Score=883.93  Aligned_cols=255  Identities=62%  Similarity=1.036  Sum_probs=252.7

Q ss_pred             ceeeccccCchhHHHHHHHHHHHHhhhccccCCCCCCcccccccccCCceeeEEEEeeCCCCCcceeeeehhccccCCCc
Q 020870           62 KFMEFPYASGPVRQLMVDLVSTVENTLDSQLLPCTLPPDVQYYENQNGTAQASLQIRSGLKSSLIDFILGSWVHSELPTG  141 (320)
Q Consensus        62 ~~~efP~ls~a~r~lM~~L~s~vEaRLg~~LlPst~P~DV~~f~n~~G~A~GSl~irsG~~~S~IDF~l~SWLH~~lP~G  141 (320)
                      +||||||+|+|||+||++|++++|+|||++|+||+||+||++|+|++|+|+|||++|||++||+|||||||||||+||+|
T Consensus         1 ~~~efp~~s~a~r~lm~~l~~~ve~Rlg~~l~Ps~~P~dv~~f~n~~G~a~GSl~irsG~~~S~IDf~l~SWlh~~lp~g   80 (267)
T PLN02581          1 RFIEFPKVSPAHRELMVDLASAVEARLGSLLLPSSLPPDVRSFQNQSGNAQGSLHIRSGAQGSKIDFVLGSWLHCKLPTG   80 (267)
T ss_pred             CcccccCCCcchHHHHHHHHHHHHHHhccccCCccCchHHHHhcCCCCCceeEEEEecCCCCCceeEEeehhhcCCCCCC
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccceeeeeeccCCCCCCceeeeeeeeCCCeEEEEeecCCccCCCCCchhHHHhhcccchHHHHHHHhhCCCcccccCc
Q 020870          142 AALNITSLSAYLNSSTDAPNLLIELIQSSPSSLVLILDLSPRKDLVLHPDYLQTFYESTRLDEYRQMLEKVPEVRPYFSS  221 (320)
Q Consensus       142 galnItsL~v~L~pstDaPHfl~ElIQ~sPtsLv~~LDl~PRkDLvl~PdYL~~yYEdt~ld~~Rq~lek~Pq~~PY~Ss  221 (320)
                      ||+|||||++||||+||||||+||||||+||+|||||||+||||||+||||||||||||++|+|||+|+|+||+|||+|+
T Consensus        81 galnItsL~~~L~~stdaPhf~~Eliq~sptslv~~LDl~PRkDLvl~pdYl~~yYe~t~ld~~Rq~l~k~pe~~pY~S~  160 (267)
T PLN02581         81 GALNITSLSAFLNPSTDAPHFLVELIQSSPTSLVLILDLPPRKDLVLHPDYLKTYYEDTQLDAHRQKLEKLPQVQPYVSP  160 (267)
T ss_pred             ccccHHHHHhHhccCCCCCceeeeeeccCCceEEEEeccCCccccccCHHHHHHHhcccccHHHHHHHHhCcccCccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceeeeeeccceEEEEeecccccCCCccccHHHHHhhcchhhHHHHHHHHHHHHH------------HHHHhhhhhhhhc
Q 020870          222 SLYLRCVISPSAIMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQCA------------YLEKRDGLIKNKT  289 (320)
Q Consensus       222 SLyiRs~~SPTAi~~~i~~e~~~~~g~~~~leeIV~~~i~p~A~evl~~WL~~c~------------~L~kRD~~IR~k~  289 (320)
                      |||||+++|||||||+|+|    ++|++++|||||++||+|+||+||++||+.|+            +|+|||++||+|+
T Consensus       161 SLyvRs~~SPTAi~~~i~~----~~~~~~~leeiv~~~i~p~a~evl~~WL~~c~~~~~~~~e~Er~~l~kRD~~Ir~k~  236 (267)
T PLN02581        161 SLYVRSVVSPTAILVKIDC----EEGGEERLEEIVRDQVAPVAKEVLEIWLDSCACLGREMEEEERAYLEKRDRMIRSKS  236 (267)
T ss_pred             cceeeeccCCceEEEEeec----CCCccccHHHHHHhhhhHHHHHHHHHHHHHhccCCccCcHHHHHHHHHHHHHHHhhc
Confidence            9999999999999999999    77899999999999999999999999999998            9999999999999


Q ss_pred             eeeccCCCCCcccChhHHHHHHHHHHhHhcC
Q 020870          290 IEIDLGSSFPRLFGPQVASRVLGEIQKVFTA  320 (320)
Q Consensus       290 iE~DL~snlPRlFG~EvadRVv~air~~f~~  320 (320)
                      ||+||++|||||||||||||||++|||+|++
T Consensus       237 iE~Dl~~nlprlFGqevadRvv~air~~~~~  267 (267)
T PLN02581        237 VEVDLSSNMPRLFGQEVADRVVAAIRKAFRV  267 (267)
T ss_pred             eeechhhhhhhHhChHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999985

>PF06405 RCC_reductase: Red chlorophyll catabolite reductase (RCC reductase); InterPro: IPR009439 This family consists of several red chlorophyll catabolite reductase (RCC reductase) proteins

Probab=100.00  E-value=1.8e-117  Score=817.52  Aligned_cols=243  Identities=60%  Similarity=1.022  Sum_probs=213.4

Q ss_pred             hhHHHHHHHHHHHHhhhccccCCCCCCcccccccccCCceeeEEEEeeCCCCCcceeeeehhccccCCCcccccceeeee
Q 020870           72 PVRQLMVDLVSTVENTLDSQLLPCTLPPDVQYYENQNGTAQASLQIRSGLKSSLIDFILGSWVHSELPTGAALNITSLSA  151 (320)
Q Consensus        72 a~r~lM~~L~s~vEaRLg~~LlPst~P~DV~~f~n~~G~A~GSl~irsG~~~S~IDF~l~SWLH~~lP~GgalnItsL~v  151 (320)
                      |||++|++|++++|+|||++|+||++|+||++|+|++|+|+|||++|||++||+|||||||||||++|+||++|||||++
T Consensus         1 ~~relm~~l~~~~e~rL~~~L~p~~~p~dv~~f~n~~g~a~GSl~vrsG~~~s~IDf~l~SWlh~~lP~~g~lnItsL~v   80 (255)
T PF06405_consen    1 AHRELMVDLASEVEARLGSRLLPSTVPPDVQYFSNQDGNAEGSLHVRSGAEGSPIDFMLGSWLHCKLPTGGALNITSLSV   80 (255)
T ss_dssp             HHHHHHHHHHHHHHHHTGGGB----S-HHHHEEE-TTSSEEEEEEEEEB-TTSSEEEEEEEEEEEE-TTS-EEEEEEEEE
T ss_pred             ChHHHHHHHHHHHHHHHhcccCCCCCChhHHHhcCCCCCceeEEEEecCCCCCceeEEEeeeeeecCCCCceeeeheeee
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eccCCCCCCceeeeeeeeCCCeEEEEeecCCccCCCCCchhHHHhhcccchHHHHHHHhhCCCcccccCccceeeeeecc
Q 020870          152 YLNSSTDAPNLLIELIQSSPSSLVLILDLSPRKDLVLHPDYLQTFYESTRLDEYRQMLEKVPEVRPYFSSSLYLRCVISP  231 (320)
Q Consensus       152 ~L~pstDaPHfl~ElIQ~sPtsLv~~LDl~PRkDLvl~PdYL~~yYEdt~ld~~Rq~lek~Pq~~PY~SsSLyiRs~~SP  231 (320)
                      ||||+||||||+||||||+||+|||||||+||||||+||||||||||+|+||++||+||++||+|||+|+|||||+++||
T Consensus        81 ~L~~stdaPhf~~Eliq~sp~~lv~~lDl~PRkDLvl~pdYl~~yYe~t~ld~~R~~le~~pe~~pY~S~SLyvRs~~SP  160 (255)
T PF06405_consen   81 FLNPSTDAPHFLFELIQSSPTSLVFYLDLPPRKDLVLHPDYLDRYYEDTQLDKHRQLLEKLPEFQPYVSSSLYVRSVVSP  160 (255)
T ss_dssp             EE-TT--S--EEEEEEESSSSEEEEEEE---SS-TTT-HHHHHHHTTTTTCHHHHHHHHHSTTEEE---S-HHHHHHS-T
T ss_pred             eecccCCCCcEEEEEeecCCCcEEEEEecCcccccccCHHHHHHHhcccchhHHHHHHHhCcccCcccCcchhheeccCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEEeecccccCCCccccHHHHHhhcchhhHHHHHHHHHHHHH------------HHHHhhhhhhhhceeeccCCCCC
Q 020870          232 SAIMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQCA------------YLEKRDGLIKNKTIEIDLGSSFP  299 (320)
Q Consensus       232 TAi~~~i~~e~~~~~g~~~~leeIV~~~i~p~A~evl~~WL~~c~------------~L~kRD~~IR~k~iE~DL~snlP  299 (320)
                      |||||+|+|    ++|++++|||||++||+|+||+||++|||+|+            +|+|||++||+|+||+||+||||
T Consensus       161 TAi~~~i~~----~~g~~~~leeIv~~~i~p~A~~vl~~WL~~c~~~~~~v~e~Er~~L~~RD~~ir~~~iE~Dl~~~~p  236 (255)
T PF06405_consen  161 TAILYSIDC----EEGGEERLEEIVRDHIAPVAKEVLDIWLDSCADEAREVEEEERAALAKRDRMIRRKSIEVDLSSNLP  236 (255)
T ss_dssp             T-EEEEEE-----SS--HHHHHHHHHHTHHHHHHHHHHHHHHHTTSSSSTS-HHHHHHHHHHHHHHHHHHHHHHTTTCHH
T ss_pred             ceEEEEecc----cccchhhHHHHHHhhhhHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHhhceeeeccccchh
Confidence            999999999    67999999999999999999999999999999            99999999999999999999999


Q ss_pred             cccChhHHHHHHHHHHhHh
Q 020870          300 RLFGPQVASRVLGEIQKVF  318 (320)
Q Consensus       300 RlFG~EvadRVv~air~~f  318 (320)
                      ||||||+|||||++|||+|
T Consensus       237 rlFG~evadrvv~ai~~~f  255 (255)
T PF06405_consen  237 RLFGQEVADRVVAAIRGAF  255 (255)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             hhhChHHHHHHHHHHHhhC
Confidence            9999999999999999998

Red chlorophyll catabolite (RCC) reductase (RCCR) and pheophorbide (Pheide) a oxygenase (PaO) catalyse the key reaction of chlorophyll catabolism, porphyrin macrocycle cleavage of Pheide a to a primary fluorescent catabolite (pFCC) [].; PDB: 2ZXK_A 3AGA_B 3AGC_B 2ZXL_A 3AGB_A.

>PRK13248 phycoerythrobilin:ferredoxin oxidoreductase; Provisional

Probab=98.84  E-value=7.9e-08  Score=90.26  Aligned_cols=204  Identities=18%  Similarity=0.312  Sum_probs=147.6

Q ss_pred             HHHHHHHHHHHhhhccccCCCCCCcccccccccCCceeeEEEEeeCCCCCcceeeeehhccccCC----------Ccccc
Q 020870           75 QLMVDLVSTVENTLDSQLLPCTLPPDVQYYENQNGTAQASLQIRSGLKSSLIDFILGSWVHSELP----------TGAAL  144 (320)
Q Consensus        75 ~lM~~L~s~vEaRLg~~LlPst~P~DV~~f~n~~G~A~GSl~irsG~~~S~IDF~l~SWLH~~lP----------~Ggal  144 (320)
                      ..+..|.+.++++   +..|-.+|.++.+=.+           .+|..+++..-++.||+-.+.|          .|..+
T Consensus        17 ~fl~~l~~~l~~~---~~~p~~i~~~f~~~e~-----------~~~~~~~~~~~~~~sw~~~~~~~~R~~R~~~i~g~~L   82 (253)
T PRK13248         17 NFLKYLTNNLSKY---NCLEKKIPSEYSYKDS-----------TYGSKKSKKNVNLSTWGVTHKKRIQFARAVCINSPNY   82 (253)
T ss_pred             HHHHHHHHHHHHc---CCceecCcHhhhhhhh-----------cccccccCCceEEEeeecccChHHHHHhhheecCCCC
Confidence            3467788888665   4455557888874322           1234456778889999884445          67899


Q ss_pred             cceeeeeeccCCCCCCceeeeeeeeCCCeEEEEeecCCccCCCCCchhHHHhhcccchHHHHHHHhhCC-------Cccc
Q 020870          145 NITSLSAYLNSSTDAPNLLIELIQSSPSSLVLILDLSPRKDLVLHPDYLQTFYESTRLDEYRQMLEKVP-------EVRP  217 (320)
Q Consensus       145 nItsL~v~L~pstDaPHfl~ElIQ~sPtsLv~~LDl~PRkDLvl~PdYL~~yYEdt~ld~~Rq~lek~P-------q~~P  217 (320)
                      +|.|..+|=+|..|-|=|++-|+.+.=.+ ..||||=|=.++-  .+|.++||+...-=..+ .-+.+|       +..+
T Consensus        83 qVLn~V~fP~p~yDLPiFGaDlV~~~~~~-~aIlDlqPl~~~~--~~Y~~~~~~~L~~l~~~-~~~~lP~~g~~~~e~~~  158 (253)
T PRK13248         83 SVLNFLIIPNTIYNVPFFGVDFVSLPNSH-LLVLDFQPSLKIQ--NQYNNELLEKLIKLKNH-CHSSLPLAEKMSADVAR  158 (253)
T ss_pred             eEEEEEecCCCCCCCCccceeeeccCCCc-EEEEECCccccCh--HHHHHHHHhhccchhhh-hHhhCCCCCcCcchhHh
Confidence            99999999999999999999999854444 5699999977432  37999999976543332 346889       7777


Q ss_pred             ccCccceeeeeeccceEEEEeecccccCCCccccHHHHHhhcchhhHHHHHHHHHHHHH-----------HHHHhhhhhh
Q 020870          218 YFSSSLYLRCVISPSAIMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQCA-----------YLEKRDGLIK  286 (320)
Q Consensus       218 Y~SsSLyiRs~~SPTAi~~~i~~e~~~~~g~~~~leeIV~~~i~p~A~evl~~WL~~c~-----------~L~kRD~~IR  286 (320)
                      |||          |-.+..+...    ++   |. .++|++.+-+..++-|++|++-.+           .+.++..--=
T Consensus       159 ~FS----------p~~Lf~R~~~----~~---e~-~~~ie~~~~~af~~YL~~y~~l~~~a~~~~~~~~~~i~~~Q~~Y~  220 (253)
T PRK13248        159 FFS----------PGVIWSKLPK----EE---RS-DFLIENQLYTSFKEYLDLYLEILFESKEVNIGLQKELINGQNNYL  220 (253)
T ss_pred             hCC----------CceEEEecCC----cc---cc-hhhHHHHHHHHHHHHHHHHHHHHHhCCCCCcccHHHHHHHHHHHH
Confidence            765          4555566654    22   22 256777779999999999999887           2222333333


Q ss_pred             hhceeeccCCCC-CcccChhHHHHHHHHH
Q 020870          287 NKTIEIDLGSSF-PRLFGPQVASRVLGEI  314 (320)
Q Consensus       287 ~k~iE~DL~snl-PRlFG~EvadRVv~ai  314 (320)
                      .-..|.|++.-| -++||+|=|||.|..+
T Consensus       221 ~yqaenDpar~vL~k~FG~eWae~yI~~~  249 (253)
T PRK13248        221 NYRRDNDPARPMLSSLFGKEFTESLINEV  249 (253)
T ss_pred             HHHHHcCcHHHHHHHHcChHHHHHHHHhc
Confidence            556899999988 9999999999998753

>PRK13247 dihydrobiliverdin:ferredoxin oxidoreductase; Provisional

Probab=98.83  E-value=8.4e-08  Score=89.11  Aligned_cols=194  Identities=17%  Similarity=0.235  Sum_probs=135.8

Q ss_pred             HHHHHHHHHHhhhccccCCCCCCcccccccccCCceeeEEEEeeCCCCCcceeeeehhcccc---------CC-Cccccc
Q 020870           76 LMVDLVSTVENTLDSQLLPCTLPPDVQYYENQNGTAQASLQIRSGLKSSLIDFILGSWVHSE---------LP-TGAALN  145 (320)
Q Consensus        76 lM~~L~s~vEaRLg~~LlPst~P~DV~~f~n~~G~A~GSl~irsG~~~S~IDF~l~SWLH~~---------lP-~Ggaln  145 (320)
                      ++..|++.|+++   .+.|..+|+++++-.+              .   ..+.++.+|+...         += .|..+.
T Consensus         5 ~l~~l~~~I~~~---~l~~~~ip~~l~~~~~--------------~---~~~~~i~n~~~q~~~fRk~r~~~~~~G~~lq   64 (238)
T PRK13247          5 FLEELHKEIFSR---GGQSLPVPAGLEECVS--------------E---KGNAVIRSWLWQVPGFRRWRVTRLDAGDSLQ   64 (238)
T ss_pred             HHHHHHHHHHHc---CCcccCCChhHhhhhc--------------c---cCceEEEeeeecCchHHHHHHHHhhcCCCcE
Confidence            577889999888   8889999999995421              2   2267888887642         22 478999


Q ss_pred             ceeeeeeccCCCCCCceeeeeeeeCCCeE-EE-EeecCCccCCCCCchhHHHhhcccchHHHHHHHhhC---CCcccccC
Q 020870          146 ITSLSAYLNSSTDAPNLLIELIQSSPSSL-VL-ILDLSPRKDLVLHPDYLQTFYESTRLDEYRQMLEKV---PEVRPYFS  220 (320)
Q Consensus       146 ItsL~v~L~pstDaPHfl~ElIQ~sPtsL-v~-~LDl~PRkDLvl~PdYL~~yYEdt~ld~~Rq~lek~---Pq~~PY~S  220 (320)
                      |.|..+|=+|..|.|=|++-|+. .|..- .. |+||=|=.   .+.+|.++||+.  |..+++...+.   -+.++|- 
T Consensus        65 VLn~V~fP~~~yDLPifG~Dlv~-~~~~~~laAIlDlqPl~---~~~~~~~~y~~~--L~~l~~~~~~~~~~~~~~~~d-  137 (238)
T PRK13247         65 VLNSVAYPDYNYDLPLMGIDLLW-FGKKQKLVAVLDFQPLV---QDKDYLDRYFEG--LKSLKERFPDLNSEETMRFYD-  137 (238)
T ss_pred             EEEEEecCCCCCCCCccceeEee-cCCCceEEEEEecCCCC---cchhhhHHHHHH--HHHHHHhhHhhcCCCCCCCcc-
Confidence            99999999999999999999998 56444 33 69999954   456999999976  56665432221   1111111 


Q ss_pred             ccceeeeeeccceEEEEeecccccCCCccccHHHHHhhcchhhHHHHHHHHHHHHH------------HHHHhhhhhhhh
Q 020870          221 SSLYLRCVISPSAIMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQCA------------YLEKRDGLIKNK  288 (320)
Q Consensus       221 sSLyiRs~~SPTAi~~~i~~e~~~~~g~~~~leeIV~~~i~p~A~evl~~WL~~c~------------~L~kRD~~IR~k  288 (320)
                          ....+||-.+..+-..             +.+.+.+-+..++-|++|++-.+            ...+.-.--=.-
T Consensus       138 ----~~~~FSp~~lf~R~~~-------------~~~~~~l~~af~~YL~~~~~~~~~a~~~~~~~~~~~i~~~Q~~Y~~y  200 (238)
T PRK13247        138 ----PNQYFSPWLLFCKGGA-------------ETATNSLPKAFSAFLKAYWQLHDNAKKITSTIEIQEVVQLQIDYDIY  200 (238)
T ss_pred             ----ccccCCCceEEeeCCc-------------HHHHHHHHHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHHHHH
Confidence                1234455555555332             23455568999999999999887            111222222245


Q ss_pred             ceeeccCCCC-CcccChhHHHHHHHH
Q 020870          289 TIEIDLGSSF-PRLFGPQVASRVLGE  313 (320)
Q Consensus       289 ~iE~DL~snl-PRlFG~EvadRVv~a  313 (320)
                      ..|.|++.-| -|+||+|-|||.|..
T Consensus       201 qaenDpar~~L~~~FG~~Wae~yi~~  226 (238)
T PRK13247        201 SAERDPAHGLFSSYFGKEWSERFLHE  226 (238)
T ss_pred             HHHcCcHHHHHHHHcChHHHHHHHHh
Confidence            6789999988 999999999999865

>PRK13249 phycoerythrobilin:ferredoxin oxidoreductase; Provisional

Probab=98.63  E-value=5.3e-07  Score=84.81  Aligned_cols=209  Identities=17%  Similarity=0.256  Sum_probs=139.2

Q ss_pred             HHHHHHHHHHhhhccccCCCCCCcccccccccCCceeeEEEEeeCCCCCcceeeeehhc---------cccCCC-ccccc
Q 020870           76 LMVDLVSTVENTLDSQLLPCTLPPDVQYYENQNGTAQASLQIRSGLKSSLIDFILGSWV---------HSELPT-GAALN  145 (320)
Q Consensus        76 lM~~L~s~vEaRLg~~LlPst~P~DV~~f~n~~G~A~GSl~irsG~~~S~IDF~l~SWL---------H~~lP~-Ggaln  145 (320)
                      .+..+.+.++.+   .+.|-.+|+++.+=...-++-.+           +.-....+|.         |+++=. |.++.
T Consensus        22 fl~~~~~~l~~~---~l~p~~ip~~l~~~e~~~~~~~~-----------~~~i~~~~~~~~~~~fRk~r~~~~~~G~~lq   87 (257)
T PRK13249         22 FLDDAIKALSPF---QPEPYPVAEDFLQRESQTGSKSK-----------PVKVTTATWACKTEKIRQVRAACVEAGEAAS   87 (257)
T ss_pred             HHHHHHHHHhhC---CCcccCCChhhhhhhcccccccC-----------cceEEEeeeccCChHHHHHHHHHhhcCCCcE
Confidence            455677777532   67788889999865432222111           1233334443         444443 78999


Q ss_pred             ceeeeeeccCCCCCCceeeeeeeeCCCeEEEEeecCCccCCCCCchhHHHhhcccchHHHHHH-HhhCCCcccccCccce
Q 020870          146 ITSLSAYLNSSTDAPNLLIELIQSSPSSLVLILDLSPRKDLVLHPDYLQTFYESTRLDEYRQM-LEKVPEVRPYFSSSLY  224 (320)
Q Consensus       146 ItsL~v~L~pstDaPHfl~ElIQ~sPtsLv~~LDl~PRkDLvl~PdYL~~yYEdt~ld~~Rq~-lek~Pq~~PY~SsSLy  224 (320)
                      |.|..+|=+|..|.|=|++-|+. .|..-.+.+||=|=.+-  .|+|+++|++...-  +.++ -+++|.--.-.+   =
T Consensus        88 VLn~V~fP~p~yDLPiFGaDlv~-~~~~~~lalDlqPl~~~--~~~~~~~y~~~L~~--~~~~~~~~lP~~g~i~~---e  159 (257)
T PRK13249         88 VLNFVINPSNRFDLPFFGADLVT-LPNGHLLALDLQPALKT--DEIHTQHVWERLMP--IFEHWQSKLPSGGPIPE---E  159 (257)
T ss_pred             EEEEEecCCcCCCCCccceeeee-cCCceEEEEecCccccc--cHHHHHHHHHHHHH--HHHhhHHhCCCcCCccc---h
Confidence            99999999999999999999998 77777677999996532  58999999987732  2223 334554322111   1


Q ss_pred             eeeeeccceEEEEeecccccCCCccccHHHHHhhcchhhHHHHHHHHHHHHH-----------HHHHhhhhhhhhceeec
Q 020870          225 LRCVISPSAIMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQCA-----------YLEKRDGLIKNKTIEID  293 (320)
Q Consensus       225 iRs~~SPTAi~~~i~~e~~~~~g~~~~leeIV~~~i~p~A~evl~~WL~~c~-----------~L~kRD~~IR~k~iE~D  293 (320)
                      .+..+||-.+..+...    ++++.    ..|...|.+.-++-|++|++-.+           .+.+...--=.-..|.|
T Consensus       160 ~~~fFSp~~lf~Rp~~----~~e~~----~~~~~~l~~AF~~YL~~~~~l~~~a~~~~~~~~~~i~~~Q~~Y~~yqaenD  231 (257)
T PRK13249        160 AQPYFSPGFLWTRLPL----GEEGD----NLISEVIRPAFDEYLNLYLDLVEEAKPVSKERAFKLLEGQKRYTSYRAEKD  231 (257)
T ss_pred             hhhcCCCceEEEecCC----ccchh----HHHHHHHHHHHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHHHHHHHHHcC
Confidence            1233566677777765    33222    35555569999999999999887           22222222224568999


Q ss_pred             cCCCC-CcccChhHHHHHHHHH
Q 020870          294 LGSSF-PRLFGPQVASRVLGEI  314 (320)
Q Consensus       294 L~snl-PRlFG~EvadRVv~ai  314 (320)
                      ++.-| -|+||+|-|||.|+.+
T Consensus       232 par~vL~k~FG~eWae~yi~~v  253 (257)
T PRK13249        232 PARGMLTRFHGSEWTESYIHNV  253 (257)
T ss_pred             cHHHHHHHHhCHHHHHHHHHhc
Confidence            99988 9999999999998753

>PF05996 Fe_bilin_red: Ferredoxin-dependent bilin reductase; InterPro: IPR009249 This family consists of several different but closely related proteins which include phycocyanobilin:ferredoxin oxidoreductase 1

Probab=98.56  E-value=2.2e-07  Score=84.97  Aligned_cols=203  Identities=21%  Similarity=0.275  Sum_probs=121.3

Q ss_pred             HHHHhhhccc--cCCCCCCcccccccccCCceeeEEE--EeeCCCCCcceeeeehhccccCCC-cccccceeeeeeccCC
Q 020870           82 STVENTLDSQ--LLPCTLPPDVQYYENQNGTAQASLQ--IRSGLKSSLIDFILGSWVHSELPT-GAALNITSLSAYLNSS  156 (320)
Q Consensus        82 s~vEaRLg~~--LlPst~P~DV~~f~n~~G~A~GSl~--irsG~~~S~IDF~l~SWLH~~lP~-GgalnItsL~v~L~ps  156 (320)
                      ..++++++.+  |.|..+|+++.+-.+..|+..-.+.  .+.+.   +++=     +|.++=. |..+.|.|..+|=.+.
T Consensus         2 ~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~i~n~~~q~~---~fRk-----~r~~~~~~g~~lqVL~~V~yP~~~   73 (228)
T PF05996_consen    2 ETIEARWSSLPDLEPYPLPEELSYIESELGGERLVIENWCYQSP---KFRK-----LRLERADAGEGLQVLNCVIYPRPE   73 (228)
T ss_dssp             HHHHHHHHHCTT-EEEEECCCCSEEEEETTCEEEEEEEEEEEET---TEEE-----EEEEEEEETTTEEEEEEEEEE-TT
T ss_pred             hhHHHHHHHccCCeeecCChHhhhcccccchhhHHHHhhhhccc---HHHH-----HHHHHhhcCCCcEEEEEEEcCCCC
Confidence            4567777764  6688899999988876664422221  12222   2221     2333333 7789999999999999


Q ss_pred             CCCCceeeeeeeeCCCe-EEE-EeecCCccCCCCCchhHHHhhcccchHHHHHH-HhhCCCcccccCccceeeeeeccce
Q 020870          157 TDAPNLLIELIQSSPSS-LVL-ILDLSPRKDLVLHPDYLQTFYESTRLDEYRQM-LEKVPEVRPYFSSSLYLRCVISPSA  233 (320)
Q Consensus       157 tDaPHfl~ElIQ~sPts-Lv~-~LDl~PRkDLvl~PdYL~~yYEdt~ld~~Rq~-lek~Pq~~PY~SsSLyiRs~~SPTA  233 (320)
                      .|.|=|++.++. .|.. .++ |+|+-|=   ..+.+|.++|++.  |..+++. .+..|+-+....-+   ...+||-.
T Consensus        74 ydLPiFG~Dlv~-~~~~~~~~ailDl~P~---~~~~~l~~~y~~~--L~~l~~~~~~~~~~~~~lp~w~---~~iFSp~~  144 (228)
T PF05996_consen   74 YDLPIFGADLVA-FPGKRISAAILDLQPL---SQDRDLPEKYYSK--LAPLPEKYQELFPEPRKLPEWG---NQIFSPWC  144 (228)
T ss_dssp             S---EEEEEEEE-ETTETEEEEEEEEE-S---STTSHHCHHHHHH--HHTSHHH-TT--SSBTSSSGGC---GSCS-TT-
T ss_pred             CCCCcccceeee-eCCccEEEEEEeCCCC---CCcccchHHHHHH--HHHHHHHHHhhccccccCchhH---HHhCCCce
Confidence            999999999998 4545 555 8999885   5677799999874  4444422 12223322111111   11234444


Q ss_pred             EEEEeecccccCCCccccHHHHHhhcchhhHHHHHHHHHHHHH------------HHHHhhhhhhhhceeeccCCCC-Cc
Q 020870          234 IMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQCA------------YLEKRDGLIKNKTIEIDLGSSF-PR  300 (320)
Q Consensus       234 i~~~i~~e~~~~~g~~~~leeIV~~~i~p~A~evl~~WL~~c~------------~L~kRD~~IR~k~iE~DL~snl-PR  300 (320)
                      +.++-..             +.+.+.+-+..++.|+.|++...            ....+-.--.+...|.|++-.+ -+
T Consensus       145 lf~r~~~-------------~~~~~~~~~af~~yl~~~~~~~~~a~~~~~~~~~~~~~~~Q~~Y~~~q~~nDptr~vL~~  211 (228)
T PF05996_consen  145 LFIRPSN-------------PEEEEQFLSAFKEYLQAYLELVEQAEPVTDPERIAERLEAQHRYCQYQAENDPTRRVLEK  211 (228)
T ss_dssp             EEEEEES-------------HHHHHHHHHHHHHHHHHHHHHHHHHTCSB-HHHHHHHHHHHHHHHHHHHHHCTHHHHHHH
T ss_pred             EEeeCCC-------------HHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence            4444222             23344458999999999999876            1122222233556788999888 99


Q ss_pred             ccChhHHHHHHHHH
Q 020870          301 LFGPQVASRVLGEI  314 (320)
Q Consensus       301 lFG~EvadRVv~ai  314 (320)
                      .||+|-|||.+..+
T Consensus       212 ~FG~~wae~yi~~v  225 (228)
T PF05996_consen  212 AFGEEWAERYINEV  225 (228)
T ss_dssp             HH-HHHHHHHHHHT
T ss_pred             HhChHHHHHHHHHc
Confidence            99999999998653

3.7.5 from EC (PcyA), 15,16-dihydrobiliverdin:ferredoxin oxidoreductase 1.3.7.2 from EC (PebA) and phycoerythrobilin:ferredoxin oxidoreductase 1.3.7.3 from EC (PebB). Phytobilins are linear tetrapyrrole precursors of the light-harvesting prosthetic groups of the phytochrome photoreceptors of plants and the phycobiliprotein photosynthetic antennae of cyanobacteria, red algae, and cryptomonads. It is known that that phytobilins are synthesised from haem via the intermediacy of biliverdin IX alpha (BV), which is reduced subsequently by ferredoxin-dependent bilin reductases with different double-bond specificities [].; GO: 0016636 oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor, 0050897 cobalt ion binding, 0010024 phytochromobilin biosynthetic process, 0055114 oxidation-reduction process; PDB: 3I8U_X 3AJH_A 3NB9_A 3I94_A 2DKE_A 3NB8_A 3F0M_A 3AJG_A 3I95_A 2D1E_A ....

>PRK02816 phycocyanobilin:ferredoxin oxidoreductase; Validated

Probab=98.55  E-value=1.7e-06  Score=80.60  Aligned_cols=201  Identities=19%  Similarity=0.296  Sum_probs=135.8

Q ss_pred             hhHHHHHHHHHHHHhhhcc--ccCCCCCCcccccccccCCceeeEEEEeeCCCCCcceeeeehhcc---------ccCC-
Q 020870           72 PVRQLMVDLVSTVENTLDS--QLLPCTLPPDVQYYENQNGTAQASLQIRSGLKSSLIDFILGSWVH---------SELP-  139 (320)
Q Consensus        72 a~r~lM~~L~s~vEaRLg~--~LlPst~P~DV~~f~n~~G~A~GSl~irsG~~~S~IDF~l~SWLH---------~~lP-  139 (320)
                      .-.-+...|++.|+++.+.  .+.|..+|+++.+=..   ..+|            -...+++|++         .++= 
T Consensus        11 ~~~pli~~la~~i~~~~~~~~~l~p~~l~~~l~~~~~---~~~~------------~~l~I~n~~~q~~~fRk~hle~~~   75 (243)
T PRK02816         11 QLHPLILQLAERIRSHWQQLLDLSPYALPPDLGYIEG---KLEG------------EKLFIENECYQAPGFRKLHLELAR   75 (243)
T ss_pred             hhhHHHHHHHHHHHHHHhhcCCCCcCCCChhhccccc---ccCC------------CeeEEEEeeecccchhhhheeeec
Confidence            4567889999999999986  5678999999886532   2122            2445566654         3322 


Q ss_pred             CcccccceeeeeeccCCCCCCceeeeeeeeCCCeE-EEEeecCCccCCCCCchhHHHhhcccchHHHHHHHhhCCCcccc
Q 020870          140 TGAALNITSLSAYLNSSTDAPNLLIELIQSSPSSL-VLILDLSPRKDLVLHPDYLQTFYESTRLDEYRQMLEKVPEVRPY  218 (320)
Q Consensus       140 ~GgalnItsL~v~L~pstDaPHfl~ElIQ~sPtsL-v~~LDl~PRkDLvl~PdYL~~yYEdt~ld~~Rq~lek~Pq~~PY  218 (320)
                      .|..+.|.|..+|=+|..|.|=|++-|+. .|... ..|+||=|=.. -+..+|.+++ ++...- .-+...++|+--- 
T Consensus        76 ~G~~lqVLn~V~fP~~~yDlPiFGaDlv~-~~~~~slaIlDlqPl~~-~~~~~Y~~~l-~~l~~~-~f~~~r~lp~wg~-  150 (243)
T PRK02816         76 LGNGLDILHCVMFPDPRYDLPIFGADLVA-GRGGISAAIVDLSPVSR-TLPDAYIKAL-SALPKP-AFSQPRELPEWGD-  150 (243)
T ss_pred             cCCCceEEEEEecCCCCCCCCccceeEee-cCCceeEEEEecCcccc-cchHHHHHHH-Hhhcch-hhhccccCCCccC-
Confidence            37899999999999999999999999998 56555 56899999661 2233777777 544221 1123444443332 


Q ss_pred             cCccceeeeeeccceEEEEeecccccCCCccccHHHHHhhcchhhHHHHHHHHHHHHHH------------HHHhhhhhh
Q 020870          219 FSSSLYLRCVISPSAIMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQCAY------------LEKRDGLIK  286 (320)
Q Consensus       219 ~SsSLyiRs~~SPTAi~~~i~~e~~~~~g~~~~leeIV~~~i~p~A~evl~~WL~~c~~------------L~kRD~~IR  286 (320)
                               .+||-.++++-..         +.    ++..+-+..++-|++|++-.+.            ..+..+--=
T Consensus       151 ---------~FSp~~lf~R~~~---------~~----e~~~~~~~f~~yL~~~~~~~~~a~p~~~~~~~~~~~~~Q~~Y~  208 (243)
T PRK02816        151 ---------IFSPYCLFIRPTN---------AE----EENQFLDRVDEYLSIHCQLAIAAQPDSDSEQIIERLAGQKNYC  208 (243)
T ss_pred             ---------ccCcceEEecCCC---------HH----HHHHHHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHH
Confidence                     6677766666443         11    1234478889999999988771            111111112


Q ss_pred             hhceeeccCCCC-CcccChhHHHHHHHHH
Q 020870          287 NKTIEIDLGSSF-PRLFGPQVASRVLGEI  314 (320)
Q Consensus       287 ~k~iE~DL~snl-PRlFG~EvadRVv~ai  314 (320)
                      ....|.|++.-| -|+||+|-|||-+..+
T Consensus       209 ~~q~enDptr~vL~~~FG~~Wae~yi~~v  237 (243)
T PRK02816        209 LQQKRNDKTRRVLEKAFGPEWADRYITTV  237 (243)
T ss_pred             HHHHHcCcHHHHHHHHcChHHHHHHHHhc
Confidence            345789999988 9999999999998653

>PRK13250 phycoerythrobilin:ferredoxin oxidoreductase; Provisional

Probab=98.54  E-value=1.9e-06  Score=80.67  Aligned_cols=198  Identities=17%  Similarity=0.297  Sum_probs=136.3

Q ss_pred             HHHHHHHHHHhhhccccCCCCCCcccccccccCCceeeEEEEeeCCCCCcceeeeehhccccCC-----------Ccccc
Q 020870           76 LMVDLVSTVENTLDSQLLPCTLPPDVQYYENQNGTAQASLQIRSGLKSSLIDFILGSWVHSELP-----------TGAAL  144 (320)
Q Consensus        76 lM~~L~s~vEaRLg~~LlPst~P~DV~~f~n~~G~A~GSl~irsG~~~S~IDF~l~SWLH~~lP-----------~Ggal  144 (320)
                      ....+.+.+..++  .+.|..+|+++.+-+..           .|+.-..-+.++.+|+++ -|           .|..+
T Consensus         7 Fl~~~~~~~~~~~--~l~p~~l~~~l~~~~~~-----------~~~~~~~~~~~i~n~~~q-~~~fRk~r~~~~~~G~~l   72 (248)
T PRK13250          7 FLDYAITLLTERL--ELQPYPIPAGFERKEAM-----------TGKGKKQEEVVTTSYAFQ-SPKLRQIRAAHVQGGSAL   72 (248)
T ss_pred             HHHHHHHHHhhcC--CCCCCCCchhhhhhhhh-----------ccccccCCceEEeehhhc-CcHHHHHHHHHHhcCCCc
Confidence            3445666665555  56788899999855422           232223456778888774 23           47899


Q ss_pred             cceeeeeeccCCCCCCceeeeeeeeCCCeEEEEeecCCccCCCCCchhHHHhhcccchHHHHHHHhhCCC--------cc
Q 020870          145 NITSLSAYLNSSTDAPNLLIELIQSSPSSLVLILDLSPRKDLVLHPDYLQTFYESTRLDEYRQMLEKVPE--------VR  216 (320)
Q Consensus       145 nItsL~v~L~pstDaPHfl~ElIQ~sPtsLv~~LDl~PRkDLvl~PdYL~~yYEdt~ld~~Rq~lek~Pq--------~~  216 (320)
                      .|.|..+|=+|..|.|=|++-|+. .|.....++||=|=.+  ...+|.++|++...  .+.++..++|.        ++
T Consensus        73 qVLn~V~fP~p~yDLPiFGaDlv~-~~~~~laalDlqPl~~--~~~~Y~~~~~~~l~--~~~~~~r~l~~wg~~~~~e~~  147 (248)
T PRK13250         73 QVLNFVIFPHLNYDLPFFGADLVT-LPGGHLIALDMQPLFR--DDPAYQAKYTEPIL--PLFNAHQAHLPWGGDFPEEAK  147 (248)
T ss_pred             EEEEEEecCCcCCCCCccceeeee-cCCceEEEEECCcccC--cHHHHHHHHHHhhH--HHHhhhhhcCCccccCcchhH
Confidence            999999999999999999999998 6766555599999754  12799999999654  33335555553        23


Q ss_pred             cccCccceeeeeeccceEEEEeecccccCCCccccHHHHHhhcchhhHHHHHHHHHHHHH--------H-H---HHhhhh
Q 020870          217 PYFSSSLYLRCVISPSAIMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQCA--------Y-L---EKRDGL  284 (320)
Q Consensus       217 PY~SsSLyiRs~~SPTAi~~~i~~e~~~~~g~~~~leeIV~~~i~p~A~evl~~WL~~c~--------~-L---~kRD~~  284 (320)
                      +||          ||-.+..+...        .+    .|++.+-+..++-|++|++-.+        . +   .+...-
T Consensus       148 ~~F----------Sp~~lf~Rp~~--------~~----~~e~~lf~af~~YL~~y~~~~~~a~~~~~~~~~~~i~~~Q~~  205 (248)
T PRK13250        148 PFF----------SPAFLWTRPQE--------TE----VVETRVFEAFKDYLQAYLDFVEQAEAVTDSEQLAEILQAQLR  205 (248)
T ss_pred             hhc----------CCceEEEecCC--------hh----HHHHHHHHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHH
Confidence            455          45555555432        12    3444447888999999999887        1 1   111111


Q ss_pred             hhhhceeeccCCCC-CcccChhHHHHHHHHH
Q 020870          285 IKNKTIEIDLGSSF-PRLFGPQVASRVLGEI  314 (320)
Q Consensus       285 IR~k~iE~DL~snl-PRlFG~EvadRVv~ai  314 (320)
                      -=.-..|.|++.-| -++||+|-|||.|..+
T Consensus       206 Y~~yqaenDpar~vL~k~FG~eWae~yi~~~  236 (248)
T PRK13250        206 YLRYRAEKDPARGMFTRFYGEEWTEEYIHGF  236 (248)
T ss_pred             HHHHHHHcCcHHHHHHHHhChHHHHHHHHhc
Confidence            22456899999988 9999999999998753

>PRK13246 dihydrobiliverdin:ferredoxin oxidoreductase; Provisional

Probab=98.13  E-value=3.9e-05  Score=71.71  Aligned_cols=189  Identities=17%  Similarity=0.313  Sum_probs=128.2

Q ss_pred             HHHHHHHHHHhhhccccCCCCCCcccccccccCCceeeEEEEeeCCCCCcceeeeehhccccCC-----------Ccccc
Q 020870           76 LMVDLVSTVENTLDSQLLPCTLPPDVQYYENQNGTAQASLQIRSGLKSSLIDFILGSWVHSELP-----------TGAAL  144 (320)
Q Consensus        76 lM~~L~s~vEaRLg~~LlPst~P~DV~~f~n~~G~A~GSl~irsG~~~S~IDF~l~SWLH~~lP-----------~Ggal  144 (320)
                      .+..|.+.++.+   ...|-.+|.++....                 +..-+.++.+|+++ -|           .|.++
T Consensus         5 fl~~l~~~l~~~---~~~~~~i~~~f~~~~-----------------~~~~~~~I~n~~~q-~~~fRk~r~~~~~~G~~l   63 (236)
T PRK13246          5 LVDFLKTNIDEL---NGHELQISKEFKEHH-----------------NKDSKYIIKNWLFS-SPEYRKWRITRLDGGKKL   63 (236)
T ss_pred             HHHHHHHHHHHc---CCccccCchhHHHHh-----------------cCCCceEEEeehhc-CchHHHHHHHHhhcCCCc
Confidence            466778888666   455666778877331                 11346678888764 23           47899


Q ss_pred             cceeeeeeccCCCCCCceeeeeee-eCCCeEEEEeecCCccCCCCCchhHHHhhcccchHHHHH--------HHhhCCCc
Q 020870          145 NITSLSAYLNSSTDAPNLLIELIQ-SSPSSLVLILDLSPRKDLVLHPDYLQTFYESTRLDEYRQ--------MLEKVPEV  215 (320)
Q Consensus       145 nItsL~v~L~pstDaPHfl~ElIQ-~sPtsLv~~LDl~PRkDLvl~PdYL~~yYEdt~ld~~Rq--------~lek~Pq~  215 (320)
                      +|.+..+|=+|..|.|=|+.-|+. +.-.-++-|+||=|=   ..+.+|.++||+.  |..+.+        .-.+.|+.
T Consensus        64 qVLn~V~fP~p~yDLPifG~Dlv~f~~~~~~aaIlDlqPl---~~d~~y~~~y~~~--L~~L~~~~~~~~~~~~r~~~e~  138 (236)
T PRK13246         64 QVFNTVAYPNFKSELPILGADILWFGTSQKLLAILDYQPL---IQEKKYLEKYCSS--LGFIKKKYSAFDNNKMKNIYDS  138 (236)
T ss_pred             EEEEEEecCCCCCCCCccceeeeecCCCceEEEEEeCCCc---ccchhhhHHHHHH--HHHHHHhhHhhCcccCCCCcch
Confidence            999999999999999999999988 544447778999995   5678999999987  455544        22367889


Q ss_pred             ccccCcc-ceeeeeeccceEEEEeecccccCCCccccHHHHHhhcchhhHHHHHHHHHHHHH-----------HHHHhhh
Q 020870          216 RPYFSSS-LYLRCVISPSAIMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQCA-----------YLEKRDG  283 (320)
Q Consensus       216 ~PY~SsS-LyiRs~~SPTAi~~~i~~e~~~~~g~~~~leeIV~~~i~p~A~evl~~WL~~c~-----------~L~kRD~  283 (320)
                      .+|+|+- ||+|    |.+                +    .|...+.+.=.+.++.+|+-..           .+.++..
T Consensus       139 ~~~FSp~~lf~R----~~~----------------~----~~~~~~~~~F~~~v~~Yl~i~~~~~~~~~~~~~~i~~~Q~  194 (236)
T PRK13246        139 KKYFSPWVIICR----GNK----------------L----NLDRDLNNIFHSFVNNYLNINKSNPVNQFLNLEEIKINQI  194 (236)
T ss_pred             HhhcCCceEEEe----cCC----------------c----cccHHHHHHHHHHHHHHHHHHHhcccCCccCHHHHHHHHH
Confidence            9999874 5666    221                1    1112223444555554444433           1122222


Q ss_pred             hhhhhceeeccCCCC-CcccChhHHHHHHHHH
Q 020870          284 LIKNKTIEIDLGSSF-PRLFGPQVASRVLGEI  314 (320)
Q Consensus       284 ~IR~k~iE~DL~snl-PRlFG~EvadRVv~ai  314 (320)
                      --=+-..|.|++.-| -|+||+|=|||.|..+
T Consensus       195 ~Y~~yqaenDpar~vL~k~FG~~Wae~yI~~~  226 (236)
T PRK13246        195 KYDKYSFEKDPADKLFKSFFGEKWTKKFINKF  226 (236)
T ss_pred             HHHHHHHHcCcHHHHHHHHhChHHHHHHHHhc
Confidence            222346789999988 9999999999998753

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	320
2zxl_A	285	Crystal Structure Of Red Chlorophyll Catabolite Red		1e-81
3agb_A	276	F218v Mutant Of The Substrate-Free Form Of Red Chlo		1e-80
3aga_A	276	Crystal Structure Of Rcc-Bound Red Chlorophyll Cata		3e-80
2zxk_A	285	Crystal Structure Of Semet-Red Chlorophyll Cataboli		5e-78

>pdb|2ZXL|A Chain A, Crystal Structure Of Red Chlorophyll Catabolite Reductase From Arabidopsis Thaliana Length = 285

Iteration: 1
 Score =  300 bits (767), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 151/288 (52%), Positives = 200/288 (69%), Gaps = 22/288 (7%)
Query: 47  APSSSPMDSHNEG-RKKFMEFPYASGPVRQLMVDLVSTVENTLDSQLLPCTLPPDVQYYE 105
            P  S M+ H++  R+KFMEFPY S   +QLMVDL+STVEN L SQLLPC LPPDV+ + 
Sbjct: 1   GPLGSSMEDHDDHLRRKFMEFPYVSPTRKQLMVDLMSTVENRLQSQLLPCNLPPDVRNFN 60
Query: 106 NQNGTAQASLQIRSGLKSSLIDFILGSWVHSELPTGAALNITSLSAYLNSSTDAPNLLIE 165
           N NG+A+ASL IRSG KSS IDF++GSW+H ++PTG +LNITS+S +LNSST APN ++E
Sbjct: 61  NPNGSAEASLHIRSGDKSSPIDFVIGSWIHCKIPTGVSLNITSISGFLNSSTKAPNFVVE 120
Query: 166 LIQSSPSSLVLILDLSPRKDLVLHPDYLQTFYESTRLDEYRQMLEKVPEVRPYFSSSLYL 225
           LIQSS  SLVLILDL  RKDLVL+PDYL+ +Y+ T LD +RQ L K+PEV PY S SL++
Sbjct: 121 LIQSSSKSLVLILDLPHRKDLVLNPDYLKEYYQDTALDSHRQSLLKLPEVNPYVSPSLFV 180
Query: 226 RCVISPSAIMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQCAYLEKR---- 281
           R   SP+A M+++D E      E  +L+ I+ +HV P AK+V+ +WL +C   E+     
Sbjct: 181 RSAFSPTASMLKIDAE------EEDKLEEILRDHVSPAAKEVLEVWLERCVKEEEEKIVV 234
Query: 282 -----------DGLIKNKTIEIDLGSSFPRLFGPQVASRVLGEIQKVF 318
                      D   + K+IE DL   FPR+FG +V+SRV+  I++ F
Sbjct: 235 GEEERMELERRDKSFRRKSIEDDLDLQFPRMFGEEVSSRVVHAIKEAF 282

>pdb|3AGB|A Chain A, F218v Mutant Of The Substrate-Free Form Of Red Chlorophyll Catabolite Reductase From Arabidopsis Thaliana Length = 276

Iteration: 1
 Score =  296 bits (757), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 147/274 (53%), Positives = 194/274 (70%), Gaps = 21/274 (7%)
Query: 60  RKKFMEFPYASGPVRQLMVDLVSTVENTLDSQLLPCTLPPDVQYYENQNGTAQASLQIRS 119
           R+KFMEFPY S   +QLMVDL+STVEN L SQLLPC LPPDV+ + N NG+A+ASL IRS
Sbjct: 6   RRKFMEFPYVSPTRKQLMVDLMSTVENRLQSQLLPCNLPPDVRNFNNPNGSAEASLHIRS 65
Query: 120 GLKSSLIDFILGSWVHSELPTGAALNITSLSAYLNSSTDAPNLLIELIQSSPSSLVLILD 179
           G KSS IDF++GSW+H ++PTG +LNITS+S +LNSST APN ++ELIQSS  SLVLILD
Sbjct: 66  GDKSSPIDFVIGSWIHCKIPTGVSLNITSISGFLNSSTKAPNFVVELIQSSSKSLVLILD 125
Query: 180 LSPRKDLVLHPDYLQTFYESTRLDEYRQMLEKVPEVRPYFSSSLYLRCVISPSAIMVRVD 239
           L  RKDLVL+PDYL+ +Y+ T LD +RQ L K+PEV PY S SL++R  +SP+A M+++D
Sbjct: 126 LPHRKDLVLNPDYLKEYYQDTALDSHRQSLLKLPEVNPYVSPSLFVRSAVSPTASMLKID 185
Query: 240 TETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQCAYLEKR---------------DGL 284
            E      E  +L+ I+ +HV P AK+V+ +WL +C   E+                D  
Sbjct: 186 AE------EEDKLEEILRDHVSPAAKEVLEVWLERCVKEEEEKIVVGEEERMELERRDKS 239
Query: 285 IKNKTIEIDLGSSFPRLFGPQVASRVLGEIQKVF 318
            + K+IE DL   FPR+FG +V+SRV+  I++ F
Sbjct: 240 FRRKSIEDDLDLQFPRMFGEEVSSRVVHAIKEAF 273

>pdb|3AGA|A Chain A, Crystal Structure Of Rcc-Bound Red Chlorophyll Catabolite Reductase From Arabidopsis Thaliana Length = 276

Iteration: 1
 Score =  295 bits (754), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 147/274 (53%), Positives = 193/274 (70%), Gaps = 21/274 (7%)
Query: 60  RKKFMEFPYASGPVRQLMVDLVSTVENTLDSQLLPCTLPPDVQYYENQNGTAQASLQIRS 119
           R+KFMEFPY S   +QLMVDL+STVEN L SQLLPC LPPDV+ + N NG+A+ASL IRS
Sbjct: 6   RRKFMEFPYVSPTRKQLMVDLMSTVENRLQSQLLPCNLPPDVRNFNNPNGSAEASLHIRS 65
Query: 120 GLKSSLIDFILGSWVHSELPTGAALNITSLSAYLNSSTDAPNLLIELIQSSPSSLVLILD 179
           G KSS IDF++GSW+H ++PTG +LNITS+S +LNSST APN ++ELIQSS  SLVLILD
Sbjct: 66  GDKSSPIDFVIGSWIHCKIPTGVSLNITSISGFLNSSTKAPNFVVELIQSSSKSLVLILD 125
Query: 180 LSPRKDLVLHPDYLQTFYESTRLDEYRQMLEKVPEVRPYFSSSLYLRCVISPSAIMVRVD 239
           L  RKDLVL+PDYL+ +Y+ T LD +RQ L K+PEV PY S SL++R   SP+A M+++D
Sbjct: 126 LPHRKDLVLNPDYLKEYYQDTALDSHRQSLLKLPEVNPYVSPSLFVRSAFSPTASMLKID 185
Query: 240 TETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQCAYLEKR---------------DGL 284
            E      E  +L+ I+ +HV P AK+V+ +WL +C   E+                D  
Sbjct: 186 AE------EEDKLEEILRDHVSPAAKEVLEVWLERCVKEEEEKIVVGEEERMELERRDKS 239
Query: 285 IKNKTIEIDLGSSFPRLFGPQVASRVLGEIQKVF 318
            + K+IE DL   FPR+FG +V+SRV+  I++ F
Sbjct: 240 FRRKSIEDDLDLQFPRMFGEEVSSRVVHAIKEAF 273

>pdb|2ZXK|A Chain A, Crystal Structure Of Semet-Red Chlorophyll Catabolite Reductase Length = 285

Iteration: 1
 Score =  287 bits (735), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 147/284 (51%), Positives = 192/284 (67%), Gaps = 21/284 (7%)
Query: 50  SSPMDSHNEGRKKFMEFPYASGPVRQLMVDLVSTVENTLDSQLLPCTLPPDVQYYENQNG 109
           SS  D  +  R+KF EFPY S   +QL VDL STVEN L SQLLPC LPPDV+ + N NG
Sbjct: 5   SSXEDHDDHLRRKFXEFPYVSPTRKQLXVDLXSTVENRLQSQLLPCNLPPDVRNFNNPNG 64
Query: 110 TAQASLQIRSGLKSSLIDFILGSWVHSELPTGAALNITSLSAYLNSSTDAPNLLIELIQS 169
           +A+ASL IRSG KSS IDF++GSW+H ++PTG +LNITS+S +LNSST APN ++ELIQS
Sbjct: 65  SAEASLHIRSGDKSSPIDFVIGSWIHCKIPTGVSLNITSISGFLNSSTKAPNFVVELIQS 124
Query: 170 SPSSLVLILDLSPRKDLVLHPDYLQTFYESTRLDEYRQMLEKVPEVRPYFSSSLYLRCVI 229
           S  SLVLILDL  RKDLVL+PDYL+ +Y+ T LD +RQ L K+PEV PY S SL++R   
Sbjct: 125 SSKSLVLILDLPHRKDLVLNPDYLKEYYQDTALDSHRQSLLKLPEVNPYVSPSLFVRSAF 184
Query: 230 SPSAIMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQCAYLEKR-------- 281
           SP+A  +++D E      E  +L+ I+ +HV P AK+V+ +WL +C   E+         
Sbjct: 185 SPTASXLKIDAE------EEDKLEEILRDHVSPAAKEVLEVWLERCVKEEEEKIVVGEEE 238
Query: 282 -------DGLIKNKTIEIDLGSSFPRLFGPQVASRVLGEIQKVF 318
                  D   + K+IE DL   FPR FG +V+SRV+  I++ F
Sbjct: 239 RXELERRDKSFRRKSIEDDLDLQFPRXFGEEVSSRVVHAIKEAF 282

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	320
3agc_A	276	RED chlorophyll catabolite reductase, chloroplast;	1e-101
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04

>3agc_A RED chlorophyll catabolite reductase, chloroplast; chlorophyll degradation, substrate-bound enzyme, chlorophyll catabolism, NADP; HET: RCC; 2.00A {Arabidopsis thaliana} PDB: 3agb_A* 3aga_A* 2zxl_A 2zxk_A Length = 276

 Score =  296 bits (759), Expect = e-101
 Identities = 148/276 (53%), Positives = 195/276 (70%), Gaps = 21/276 (7%)

Query: 59  GRKKFMEFPYASGPVRQLMVDLVSTVENTLDSQLLPCTLPPDVQYYENQNGTAQASLQIR 118
            R+KFMEFPY S   +QLMVDL+STVEN L SQLLPC LPPDV+ + N NG+A+ASL IR
Sbjct: 5   SRRKFMEFPYVSPTRKQLMVDLMSTVENRLQSQLLPCNLPPDVRNFNNPNGSAEASLHIR 64

Query: 119 SGLKSSLIDFILGSWVHSELPTGAALNITSLSAYLNSSTDAPNLLIELIQSSPSSLVLIL 178
           SG KSS IDF++GSW+H ++PTG +LNITS+S +LNSST APN ++ELIQSS  SLVLIL
Sbjct: 65  SGDKSSPIDFVIGSWIHCKIPTGVSLNITSISGFLNSSTKAPNFVVELIQSSSKSLVLIL 124

Query: 179 DLSPRKDLVLHPDYLQTFYESTRLDEYRQMLEKVPEVRPYFSSSLYLRCVISPSAIMVRV 238
           DL  RKDLVL+PDYL+ +Y+ T LD +RQ L K+PEV PY S SL++R  +SP+A M+++
Sbjct: 125 DLPHRKDLVLNPDYLKEYYQDTALDSHRQSLLKLPEVNPYVSPSLFVRSAVSPTASMLKI 184

Query: 239 DTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQC---------------AYLEKRDG 283
           D        E  +L+ I+ +HV P AK+V+ +WL +C                 LE+RD 
Sbjct: 185 DA------EEEDKLEEILRDHVSPAAKEVLEVWLERCVKEEEEKIVVGEEERMELERRDK 238

Query: 284 LIKNKTIEIDLGSSFPRLFGPQVASRVLGEIQKVFT 319
             + K+IE DL   FPR+FG +V+SRV+  I++ F 
Sbjct: 239 SFRRKSIEDDLDLQFPRMFGEEVSSRVVHAIKEAFG 274

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 5e-04
 Identities = 45/314 (14%), Positives = 99/314 (31%), Gaps = 89/314 (28%)

Query: 53  MDSHNEGRKKFME------FPYASGPVRQ-------LMVDLVSTVENTL-DSQLLPCTLP 98
           +    E  +KF+E      + +   P++        +    +   +    D+Q+      
Sbjct: 72  LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA---K 128

Query: 99  PDVQYYENQNGTAQASLQIRS-------GL----KSSL-IDFILGSWVHSELPTGAALNI 146
            +V   +      QA L++R        G+    K+ + +D  L   V  ++        
Sbjct: 129 YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF--- 185

Query: 147 TSLSAYLN-SSTDAPNLLIELIQSSPSSLVLILDLSPRKDLVLHPDYLQTFYESTRLDEY 205
                +LN  + ++P  ++E++Q     L+  +D     +     D+        R+   
Sbjct: 186 -----WLNLKNCNSPETVLEMLQK----LLYQID----PNWTSRSDHSSN--IKLRIHSI 230

Query: 206 RQMLEKVPEVRPYFSSSLYLRCVISPSA---------IMVRVDTETETGAGESTRLDYII 256
           +  L ++ + +PY +  L L  V +  A         I++   T         TR    +
Sbjct: 231 QAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILL---T---------TR-FKQV 277

Query: 257 TNHVHPVAKQVIGIWLNQCAYLEKRDGLIKNKTIEI---DLGSSFPRLFGPQVASRV--- 310
           T+ +       I +             L  ++   +    L      L  P+        
Sbjct: 278 TDFLSAATTTHISL-------DHHSMTLTPDEVKSLLLKYLDCRPQDL--PREVLTTNPR 328

Query: 311 ----LGEIQKVFTA 320
               + E  +   A
Sbjct: 329 RLSIIAESIRDGLA 342

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	320
3agc_A	276	RED chlorophyll catabolite reductase, chloroplast;	100.0
2x9o_A	244	15,16- dihydrobiliverdin-ferredoxin oxidoreductas;	99.72
3i94_A	248	Phycocyanobilin:ferredoxin oxidoreductase; alpha-b	98.76
2g18_A	253	Phycocyanobilin:ferredoxin oxidoreductase; alpha-b	98.4
2vcl_A	233	Cyanobacterial phycoerythrobilin; cyanophages, bil	98.19

>3agc_A RED chlorophyll catabolite reductase, chloroplast; chlorophyll degradation, substrate-bound enzyme, chlorophyll catabolism, NADP; HET: RCC; 2.00A {Arabidopsis thaliana} PDB: 3agb_A* 3aga_A* 2zxl_A 2zxk_A

Probab=100.00  E-value=3.3e-104  Score=735.20  Aligned_cols=257  Identities=57%  Similarity=0.962  Sum_probs=251.9

Q ss_pred             ccccceeeccccCchhHHHHHHHHHHHHhhhccccCCCCCCcccccccccCCceeeEEEEeeCCCCCcceeeeehhcccc
Q 020870           58 EGRKKFMEFPYASGPVRQLMVDLVSTVENTLDSQLLPCTLPPDVQYYENQNGTAQASLQIRSGLKSSLIDFILGSWVHSE  137 (320)
Q Consensus        58 ~~~~~~~efP~ls~a~r~lM~~L~s~vEaRLg~~LlPst~P~DV~~f~n~~G~A~GSl~irsG~~~S~IDF~l~SWLH~~  137 (320)
                      ++++|||||||+|+|||++|++|+++||+|||++++||++|+||++|+|++|+|+|||++|||+++|+||||++|||||+
T Consensus         4 ~~~~~~~~fp~~~~~~r~lm~~L~~~ie~rl~~~llP~~~P~d~~~~~~~~G~a~gsl~~~sg~~~s~id~~i~SWl~~~   83 (276)
T 3agc_A            4 GSRRKFMEFPYVSPTRKQLMVDLMSTVENRLQSQLLPCNLPPDVRNFNNPNGSAEASLHIRSGDKSSPIDFVIGSWIHCK   83 (276)
T ss_dssp             --CCCGGGCTTSCHHHHHHHHHHHHHHHHHTTTTBCCCCCCHHHHEEECTTSSEEEEEEEEEBCTTCSEEEEEEEEEEEE
T ss_pred             cchhheeeCCCCChhHHHHHHHHHHHHHHHhcCccCCcCCChhHhhhcCcCCcccceeeeccCCCCCCcceeehhhhcCc
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcccccceeeeeeccCCCCCCceeeeeeeeCCCeEEEEeecCCccCCCCCchhHHHhhcccchHHHHHHHhhCCCccc
Q 020870          138 LPTGAALNITSLSAYLNSSTDAPNLLIELIQSSPSSLVLILDLSPRKDLVLHPDYLQTFYESTRLDEYRQMLEKVPEVRP  217 (320)
Q Consensus       138 lP~GgalnItsL~v~L~pstDaPHfl~ElIQ~sPtsLv~~LDl~PRkDLvl~PdYL~~yYEdt~ld~~Rq~lek~Pq~~P  217 (320)
                      ||+||++|||+|++|||++||+|||+|||||++|+++||+|||+||||||+|||||+||||+|++|+|||+++++||++|
T Consensus        84 l~~G~al~I~nlv~yl~~~~D~Phfgidli~~g~~~ll~vLDl~PRkdLv~~~dYL~rYye~~~l~~lr~~~~~l~d~~p  163 (276)
T 3agc_A           84 IPTGVSLNITSISGFLNSSTKAPNFVVELIQSSSKSLVLILDLPHRKDLVLNPDYLKEYYQDTALDSHRQSLLKLPEVNP  163 (276)
T ss_dssp             CTTSCEEEEEEEEEEECTTCCCCCEEEEEEESSSSEEEEEEECCCSSCTTTCHHHHHHHTTSSSHHHHHHHHHTSTTEEE
T ss_pred             ccCccceeheeeeeecCcccCCchhhHHHHhcCCCceEEEEecCCccccccCHHHHHHHhcccccHHHHHHHHhCccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCccceeeeeeccceEEEEeecccccCCCccccHHHHHhhcchhhHHHHHHHHHHHHH---------------HHHHhh
Q 020870          218 YFSSSLYLRCVISPSAIMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQCA---------------YLEKRD  282 (320)
Q Consensus       218 Y~SsSLyiRs~~SPTAi~~~i~~e~~~~~g~~~~leeIV~~~i~p~A~evl~~WL~~c~---------------~L~kRD  282 (320)
                      |+|++||+|+++|||||||+|+|    ++|  ++|||||+++|.|+|+++|++||++|+               +|+|||
T Consensus       164 YfS~sLf~R~~~Spta~~~~~~~----~~g--~~l~eiv~~~l~p~~~e~L~~wl~~~~~~~~~~~~~~e~e~~~l~~rd  237 (276)
T 3agc_A          164 YVSPSLFVRSAVSPTASMLKIDA----EEE--DKLEEILRDHVSPAAKEVLEVWLERCVKEEEEKIVVGEEERMELERRD  237 (276)
T ss_dssp             CCCSCHHHHHHSCTTCEEEEEEC----SSH--HHHHHHHHHTHHHHHHHHHHHHHHHTTCSSSCCCCCCHHHHHHHHHHH
T ss_pred             ccChhHHhhhccCchhheeeccc----ccc--chHHHHHHHhhHHHHHHHHHHHHHHhhccCCccCCCChhHHHHHHHHH
Confidence            99999999999999999999999    454  999999999999999999999999998               899999


Q ss_pred             hhhhhhceeeccCCCCCcccChhHHHHHHHHHHhHhcC
Q 020870          283 GLIKNKTIEIDLGSSFPRLFGPQVASRVLGEIQKVFTA  320 (320)
Q Consensus       283 ~~IR~k~iE~DL~snlPRlFG~EvadRVv~air~~f~~  320 (320)
                      ++||+++||+||+++||||||||+|||+|++|||+|||
T Consensus       238 ~~~r~~saE~Dpa~~l~r~FG~E~sdr~l~~~~~~~~~  275 (276)
T 3agc_A          238 KSFRRKSIEDDLDLQFPRMFGEEVSSRVVHAIKEAFGV  275 (276)
T ss_dssp             HHHHHHHHHHHTTTTHHHHHCHHHHHHHHHHHHHHHTC
T ss_pred             HHHHhhhcccCchhchHhhhCHHHHHHHHHHHHhhhcc
Confidence            99999999999999999999999999999999999986

>2x9o_A 15,16- dihydrobiliverdin-ferredoxin oxidoreductas; phycobilin synthesis, cyanobacteria, oxidoreductase, phycoerythrobilin; HET: BLA; 1.55A {Synechococcus SP}

Probab=99.72  E-value=5.7e-17  Score=147.56  Aligned_cols=201  Identities=18%  Similarity=0.234  Sum_probs=165.1

Q ss_pred             HHHHHHHHHHHhhhccccCCCCCCcccccccccCCceeeEEEEeeCCCCCcceeeeehhccccCCCcccccceeeeeecc
Q 020870           75 QLMVDLVSTVENTLDSQLLPCTLPPDVQYYENQNGTAQASLQIRSGLKSSLIDFILGSWVHSELPTGAALNITSLSAYLN  154 (320)
Q Consensus        75 ~lM~~L~s~vEaRLg~~LlPst~P~DV~~f~n~~G~A~GSl~irsG~~~S~IDF~l~SWLH~~lP~GgalnItsL~v~L~  154 (320)
                      -++..|+..|++|   .+.|..+|+++++..+..+++...-.+++++   +++ -+|+|+-.  + |..+.|.|.++|-+
T Consensus        12 p~l~~l~~~i~~~---~l~p~~~~~~l~~~~~~~~~~~i~n~~y~~~---~fR-k~r~~~~~--~-g~~lqVLh~V~fP~   81 (244)
T 2x9o_A           12 SFLNELHSDITKR---GGSPLPLPEGLEECRSSKSSSVIQSWLWDVP---GFR-RWRVTRLD--A-GDSLQVFNSVAYPD   81 (244)
T ss_dssp             HHHHHHHHHHHHT---TCEEECCCTTSSEEECTTTCCEEEEEEEECT---TEE-EEEEEEEE--E-TTTEEEEEEEEEEC
T ss_pred             HHHHHHHHHHHHc---CCccCCCChHhhhhhcCCCceEEEEEEecCc---hHh-HHHHHHhc--c-CCCcEEEEEEeccC
Confidence            4678899999998   6667778899999999888899999999999   999 88888887  3 56899999999999


Q ss_pred             CCCCCCceeeeeee-eCCCeEEEEeecCCccCCCCCchhHHHhhcccchHHHHHHH------hhCCC--cccccCcc-ce
Q 020870          155 SSTDAPNLLIELIQ-SSPSSLVLILDLSPRKDLVLHPDYLQTFYESTRLDEYRQML------EKVPE--VRPYFSSS-LY  224 (320)
Q Consensus       155 pstDaPHfl~ElIQ-~sPtsLv~~LDl~PRkDLvl~PdYL~~yYEdt~ld~~Rq~l------ek~Pq--~~PY~SsS-Ly  224 (320)
                      |+.|.|+|++.|+. ++...++.++||-|..   .+.+|.++||+..  ..++++.      .++|.  ..+|+|+. ||
T Consensus        82 ~~ydlPiFG~Dlv~~~~~~~l~AilDlqP~~---~d~~y~~~Y~~~L--~~l~~~~~~~~~~~~~~~~e~~~~FSp~~lf  156 (244)
T 2x9o_A           82 YNYDHPLMGVDLLWFGARQKLVAVLDFQPLV---QDKDYLDRYFSGL--KELNQRFPDLNGEETMRSFDPNQYFSSWLLF  156 (244)
T ss_dssp             TTCCCCEEEEEEEEEGGGTEEEEEEEEECSC---CCHHHHHHHCHHH--HHHHHHCTTC--CCCCSSSCTTSSCCTTCEE
T ss_pred             CCCCCCeehhheeccCCCceEEEEEEcCCCC---ChhhchHHHHHHH--HHHHHHHHhhcCccCCChhhhHhhcCCceEE
Confidence            99999999999984 2354565599999984   3469999999854  4444432      23444  67899998 99


Q ss_pred             eeeeeccceEEEEeecccccCCCccccHHHHHhhcchhhHHHHHHHHHHHHH------------HHHHhhhhhhhhceee
Q 020870          225 LRCVISPSAIMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQCA------------YLEKRDGLIKNKTIEI  292 (320)
Q Consensus       225 iRs~~SPTAi~~~i~~e~~~~~g~~~~leeIV~~~i~p~A~evl~~WL~~c~------------~L~kRD~~IR~k~iE~  292 (320)
                      +|            ..       +     +.+.+.+-+..++-|++|+++.+            .+.+++.-..+...|.
T Consensus       157 ~R------------~~-------~-----~~~~~~~~~af~~yL~~~l~~~~~a~p~~~~~~~~~i~~~Q~~Y~~~qaen  212 (244)
T 2x9o_A          157 CR------------GG-------A-----EQADLSLPKAFSAFLKAYWDLHDNAKSIPSTIPPEEVKNLQDKYDIYSAER  212 (244)
T ss_dssp             EE------------EC-------H-----HHHHHTHHHHHHHHHHHHHHHHHHHTTSCCSSCHHHHHHHHHHHHHHHHHH
T ss_pred             Ee------------CC-------c-----HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHh
Confidence            99            11       0     34456668999999999999988            6677899999999999


Q ss_pred             ccCCCC-CcccChhHHHHHHHHH
Q 020870          293 DLGSSF-PRLFGPQVASRVLGEI  314 (320)
Q Consensus       293 DL~snl-PRlFG~EvadRVv~ai  314 (320)
                      |++..| -|+||+|-|||.|+.+
T Consensus       213 Dpar~vl~~~FG~ewae~yi~~~  235 (244)
T 2x9o_A          213 DPAHGLFTSHFGKDWSNRFLHEF  235 (244)
T ss_dssp             CSCHHHHHHHHCHHHHHHHHHHT
T ss_pred             CCHHHHHHHHcCHHHHHHHHHHc
Confidence            999998 9999999999998753

>3i94_A Phycocyanobilin:ferredoxin oxidoreductase; alpha-beta-alpha sandwich, enzyme-substrate analog complex; HET: BL3; 1.04A {Synechocystis SP} PDB: 2dke_A 2d1e_A* 3i8u_X* 3i95_A* 3f0l_A* 3f0m_A* 4eod_A* 4eoe_A* 3f0j_A* 3f0k_A* 3nb8_A* 3nb9_A* 3ajg_A* 3ajh_A* 4eoc_A*

Probab=98.76  E-value=4.4e-08  Score=89.80  Aligned_cols=210  Identities=19%  Similarity=0.271  Sum_probs=135.9

Q ss_pred             hhHHHHHHHHHHHHhhhcc-ccCCCCCCcccccccccCCceeeEEEEee-CCCCCcceeeeehhccccCC-Cccccccee
Q 020870           72 PVRQLMVDLVSTVENTLDS-QLLPCTLPPDVQYYENQNGTAQASLQIRS-GLKSSLIDFILGSWVHSELP-TGAALNITS  148 (320)
Q Consensus        72 a~r~lM~~L~s~vEaRLg~-~LlPst~P~DV~~f~n~~G~A~GSl~irs-G~~~S~IDF~l~SWLH~~lP-~GgalnIts  148 (320)
                      ..--+...|+..|+++.+. .|.|..+|+++.+-.+..|+.  .+.|++ .-++.+++=     +|.+.= .|..+.|.|
T Consensus        16 ~~~pli~~La~~i~~~~~~~~l~p~~ip~~l~~~~~~~~~~--~~~i~n~~yq~~~fRk-----~r~~~~~~G~~lqVLn   88 (248)
T 3i94_A           16 TLNPMIQQLALAIAASWQSLPLKPYQLPEDLGYVEGRLEGE--KLVIENRCYQTPQFRK-----MHLELAKVGKGLDILH   88 (248)
T ss_dssp             GSCHHHHHHHHHHHHHHTTSCCEECCCGGGCCCEEECSSSC--CEEEEEEEEECSSEEE-----EEEEEEEETTTEEEEE
T ss_pred             ccChHHHHHHHHHHHHHhcCCCeecCCchhhhhhhcccCCC--ccEEEEEeecCchHHH-----HHHHHhhcCCCcEEEE
Confidence            4456788899999998775 344888999998876533221  122221 111112221     222222 478999999


Q ss_pred             eeeeccCCCCCCceeeeeeeeCCCe-EEEEeecCCccCCCCCchhHHHhhcccchHHHHH-HHhhCCCcccccCccceee
Q 020870          149 LSAYLNSSTDAPNLLIELIQSSPSS-LVLILDLSPRKDLVLHPDYLQTFYESTRLDEYRQ-MLEKVPEVRPYFSSSLYLR  226 (320)
Q Consensus       149 L~v~L~pstDaPHfl~ElIQ~sPts-Lv~~LDl~PRkDLvl~PdYL~~yYEdt~ld~~Rq-~lek~Pq~~PY~SsSLyiR  226 (320)
                      ..+|=++..|.|=|++-|+. +|.. ++.++|+-|=.+   +.+|.++|++..  ..+++ .+.+.-+..|+-       
T Consensus        89 ~V~fP~~~yDLPiFG~Dlv~-~~~~~~lailDlqPl~~---d~~y~~~Y~~~l--~~l~~~~f~~~r~l~~wg-------  155 (248)
T 3i94_A           89 CVMFPEPLYGLPLFGCDIVA-GPGGVSAAIADLSPTQS---DRQLPAAYQKSL--AELGQPEFEQQRELPPWG-------  155 (248)
T ss_dssp             EEEEECGGGTCCEEEEEEEE-ETTEEEEEEEEEECCST---TSCCCHHHHHHH--HHTCCCCCSSBCCCCGGG-------
T ss_pred             EEEccCCCCCCCccceeEec-cCCceEEEEEECCCCCC---cccchHHHHHHH--HHhchhhhcCcccCCchh-------
Confidence            99999999999999999999 5545 468999999544   677888888762  22211 111111112221       


Q ss_pred             eeeccceEEEEeecccccCCCccccHHHHHhhcchhhHHHHHHHHHHHHH-----------HHHHhhhhhhhhceeeccC
Q 020870          227 CVISPSAIMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQCA-----------YLEKRDGLIKNKTIEIDLG  295 (320)
Q Consensus       227 s~~SPTAi~~~i~~e~~~~~g~~~~leeIV~~~i~p~A~evl~~WL~~c~-----------~L~kRD~~IR~k~iE~DL~  295 (320)
                      ..+||-.++++-..        ++ -+    +.+....++-+++|++...           ...++..---+...|.|++
T Consensus       156 ~iFSp~~lf~Rp~~--------~e-e~----~~f~~~~~~Yl~~~~~~~~~a~p~~~~~~~~~~~~Q~~Y~~~qaenDpa  222 (248)
T 3i94_A          156 EIFSEYCLFIRPSN--------VT-EE----ERFVQRVVDFLQIHCHQSIVAEPLSEAQTLEHRQGQIHYCQQQQKNDKT  222 (248)
T ss_dssp             GGSCTTCEEECCCS--------HH-HH----HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             hhCCCceEEecCCC--------HH-HH----HHHHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHHHhCcH
Confidence            25788777777221        11 11    3336777999999999887           2233333344678899999


Q ss_pred             CCC-CcccChhHHHHHHHHH
Q 020870          296 SSF-PRLFGPQVASRVLGEI  314 (320)
Q Consensus       296 snl-PRlFG~EvadRVv~ai  314 (320)
                      .-| -|.||+|-|||.|+.+
T Consensus       223 r~vL~~~FG~eWae~yi~~~  242 (248)
T 3i94_A          223 RRVLEKAFGEAWAERYMSQV  242 (248)
T ss_dssp             HHHHHHHHCHHHHHHHHHHT
T ss_pred             HHHHHHHhChHHHHHHHHHh
Confidence            988 9999999999998753

>2g18_A Phycocyanobilin:ferredoxin oxidoreductase; alpha-beta-alpha sandwich; 2.50A {Anabaena SP}

Probab=98.40  E-value=6.1e-07  Score=82.44  Aligned_cols=200  Identities=16%  Similarity=0.202  Sum_probs=124.3

Q ss_pred             HHHHHHHHHHHHhhhc--cccCCCCCCcccccccccCCceeeEEEEeeCCCCCcceeeeehhccc---------cCC-Cc
Q 020870           74 RQLMVDLVSTVENTLD--SQLLPCTLPPDVQYYENQNGTAQASLQIRSGLKSSLIDFILGSWVHS---------ELP-TG  141 (320)
Q Consensus        74 r~lM~~L~s~vEaRLg--~~LlPst~P~DV~~f~n~~G~A~GSl~irsG~~~S~IDF~l~SWLH~---------~lP-~G  141 (320)
                      ..++..|++.++.+++  ..|.|..+|+++.+-.+..|+..               ..+++|.++         +.= .|
T Consensus        22 ~p~l~~l~~~i~~~~~~~~~l~p~~lp~~l~~~~~~~~~~~---------------l~i~n~~yq~~~fRk~r~e~~~~G   86 (253)
T 2g18_A           22 HPLIRQLADCIEEVWHQHLDLSPYHLPAELGYVEGRLEGEK---------------LTIENRCYQTPQFRKMHLELAKVG   86 (253)
T ss_dssp             CHHHHHHHHHHHHHHHHHSCCEECCCCGGGSEEEEEETTEE---------------EEEEEEEEECSSEEEEEEEEEEET
T ss_pred             cHHHHHHHHHHHHHHhccCCCeeccCchHHhhhhcccCCCc---------------eEEEEeeeecchhhhhHHhhhhcC
Confidence            4678899999999988  46679999999977665332222               334444332         211 37


Q ss_pred             ccccceeeeeeccCCCCCCceeeeeeeeCCCeEEEEeecCCccCCCCCchhHHHhhcccchHHHH-HHHhhCCCcccccC
Q 020870          142 AALNITSLSAYLNSSTDAPNLLIELIQSSPSSLVLILDLSPRKDLVLHPDYLQTFYESTRLDEYR-QMLEKVPEVRPYFS  220 (320)
Q Consensus       142 galnItsL~v~L~pstDaPHfl~ElIQ~sPtsLv~~LDl~PRkDLvl~PdYL~~yYEdt~ld~~R-q~lek~Pq~~PY~S  220 (320)
                      ..+.|.|..+|=+++.|.|=|++.|+.....-.++++|+=|=.+   +-+|.++|++..  ..++ ..+.+.-+..+|- 
T Consensus        87 ~~lqVLn~V~fP~~~yDLPiFG~Dlv~~~~~~~l~ilDlqPl~~---d~~~~~~Y~~~L--~~L~~~~f~~~r~lp~wg-  160 (253)
T 2g18_A           87 NMLDILHCVMFPRPEYDLPMFGCDLVGGRGQISAAIADLSPVHL---DRTLPESYNSAL--TSLNTLNFSQPRELPEWG-  160 (253)
T ss_dssp             TTEEEEEEEEEECTTSCCCEEEEEEEEETTEEEEEEEEEECSST---TCCCCHHHHHHH--HHSCCCCCSSBCCCCTTG-
T ss_pred             CCcEEEEEEEcCCCCCCCCeeeeeeeccCCceEEEEEECCCCCC---cccchHHHHHHH--HhhccccccccccCCchh-
Confidence            89999999999999999999999999844433446999977432   345666665432  2221 1111111112222 


Q ss_pred             ccceeeeeeccceEEEEeecccccCCCccccHHHHHhhcchhhHHHHHHHHHHHHH-----------HHHHhhhhhhhhc
Q 020870          221 SSLYLRCVISPSAIMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQCA-----------YLEKRDGLIKNKT  289 (320)
Q Consensus       221 sSLyiRs~~SPTAi~~~i~~e~~~~~g~~~~leeIV~~~i~p~A~evl~~WL~~c~-----------~L~kRD~~IR~k~  289 (320)
                            ..+||-.+.++....       +| . +..    -...++-|++|++.+.           .+.+.-.---+..
T Consensus       161 ------~iFSp~~lf~Rp~~~-------ee-~-~aF----~~~~~~yL~~~~~~~~~a~~~~~~~~~~i~~~Q~~Y~~~q  221 (253)
T 2g18_A          161 ------NIFSDFCIFVRPSSP-------EE-E-AMF----LGRVREFLQVHCQGAIAASPVSAEQKQQILAGQHNYCSKQ  221 (253)
T ss_dssp             ------GGSCTTCEEECCCSH-------HH-H-HHH----HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             ------hhcCcceEEeccCch-------HH-H-HHH----HHHHHHHHHHHHHHHHhCCCCCcccHHHHHHHHHHHHHHH
Confidence                  257887777776541       11 1 111    1224455555554444           2333333344567


Q ss_pred             eeeccCCCC-CcccChhHHHHHHHH
Q 020870          290 IEIDLGSSF-PRLFGPQVASRVLGE  313 (320)
Q Consensus       290 iE~DL~snl-PRlFG~EvadRVv~a  313 (320)
                      .|.|++--| -+.||+|-|||.|..
T Consensus       222 aenDpar~vL~~~FG~ewae~yi~~  246 (253)
T 2g18_A          222 QQNDKTRRVLEKAFGVDWAENYMTT  246 (253)
T ss_dssp             HHHCTHHHHHHHHHCHHHHHHHHHH
T ss_pred             HHhCcHHHHHHHHcCHHHHHHHHHh
Confidence            788998777 999999999999865

>2vcl_A Cyanobacterial phycoerythrobilin; cyanophages, biliverdin IXA, oxidoreductase, phycobilin reductase, phycobilin synthesis; 1.55A {Prochlorococcus phage p-ssm2} PDB: 2vck_A 2vgr_A* 2x9i_A* 2x9j_A*

Probab=98.19  E-value=5e-07  Score=82.67  Aligned_cols=185  Identities=13%  Similarity=0.102  Sum_probs=125.5

Q ss_pred             hHHHHHHHHHHHHhhhccccCCCCCCcccccccccCCceeeEEEEeeCCCCCcceeeeehhccc---------cCCCccc
Q 020870           73 VRQLMVDLVSTVENTLDSQLLPCTLPPDVQYYENQNGTAQASLQIRSGLKSSLIDFILGSWVHS---------ELPTGAA  143 (320)
Q Consensus        73 ~r~lM~~L~s~vEaRLg~~LlPst~P~DV~~f~n~~G~A~GSl~irsG~~~S~IDF~l~SWLH~---------~lP~Gga  143 (320)
                      -..++..|+..+     ..|.|..+|+++.+=.   |+.            ...+-.+.+|+++         ++=.|..
T Consensus        24 ~~p~i~~l~~~i-----~~L~p~~l~~~l~~~e---~~~------------~~~~~~i~n~~y~s~~fRK~r~~~~~g~~   83 (233)
T 2vcl_A           24 WQNYIDALFETF-----PQLEISEVWAKWDGGN---VTK------------DGGDAKLTANIRTGEHFLKAREAHIVDPN   83 (233)
T ss_dssp             THHHHHHHHHHC-----TTCEEEEEEEEEEECC--------------------CCEEEEEEEEEETTEEEEEEEEEEETT
T ss_pred             HHHHHHHHHHhc-----cCCcccCCchHhcccc---ccc------------CCCceEEEehhhcCcHHHHHHHHHhcCCC
Confidence            445666677666     3788888999887543   221            2245566666543         3334889


Q ss_pred             ccceeeeeeccCCCCCCceeeeeeeeCCCeEEE-EeecCCccCCCCCchhHHHhhcccchHHHHHHHhhCC---Cccccc
Q 020870          144 LNITSLSAYLNSSTDAPNLLIELIQSSPSSLVL-ILDLSPRKDLVLHPDYLQTFYESTRLDEYRQMLEKVP---EVRPYF  219 (320)
Q Consensus       144 lnItsL~v~L~pstDaPHfl~ElIQ~sPtsLv~-~LDl~PRkDLvl~PdYL~~yYEdt~ld~~Rq~lek~P---q~~PY~  219 (320)
                      +.|.|..+|=+|..|.|=|++-|+. .|....+ ++|+-|=.         ++|++...  .+.. -+++|   +..+||
T Consensus        84 lqVLn~V~fP~~~yDLPiFG~Dlv~-~~~~~~lailDlqPl~---------~~Y~~~L~--~Lp~-~~~lp~fye~~~~F  150 (233)
T 2vcl_A           84 SDIYNTILYPKTGADLPCFGMDLMK-FSDKKVIIVFDFQHPR---------EKYLFSVD--GLPE-DDGKYRFFEMGNHF  150 (233)
T ss_dssp             EEEEEEEEEECBSSCCCEEEEEEEE-EETTEEEEEEEEECSS---------TTCCCCCT--TSCC-CCSSSCCSCTTSSC
T ss_pred             CeEEEEEecCCCCCCCCccceeeec-cCCceEEEEEeCCccH---------HHHHHHHh--cCCC-CCCCCCccchhhcc
Confidence            9999999999999999999999997 5555554 99998855         67776432  2211 46788   899999


Q ss_pred             CccceeeeeeccceEEEEeecccccCCCccccHHHHHhhcchhhHHHHHHHHHHHHHH------HHHhhhhhhhhceeec
Q 020870          220 SSSLYLRCVISPSAIMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQCAY------LEKRDGLIKNKTIEID  293 (320)
Q Consensus       220 SsSLyiRs~~SPTAi~~~i~~e~~~~~g~~~~leeIV~~~i~p~A~evl~~WL~~c~~------L~kRD~~IR~k~iE~D  293 (320)
                      |+-||+|    |        +    +.       +.+...+ +..++-|+.|++.+..      +.++..--=+...|.|
T Consensus       151 Sp~lf~R----p--------~----~~-------~e~~~~l-~af~~YL~~y~~~~~~a~p~~~i~~~Q~~Y~~~q~enD  206 (233)
T 2vcl_A          151 SKNIFVR----Y--------C----KP-------DEVDQYL-DTFKLYLTKYKEMIDNNKPVGEDTTVYSDFDTYMTELD  206 (233)
T ss_dssp             CTTCEEE----E--------E----CG-------GGGGGGH-HHHHHHHHHHHHHHHHHCCCBCCGGGGHHHHHHHHHC-
T ss_pred             CCCeEEe----e--------C----CH-------HHHHHHH-HHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhC
Confidence            9999999    1        1    10       2344555 7778899999987771      1111111223457889


Q ss_pred             cCCCC-CcccChhHHHHHHHHH
Q 020870          294 LGSSF-PRLFGPQVASRVLGEI  314 (320)
Q Consensus       294 L~snl-PRlFG~EvadRVv~ai  314 (320)
                      ++.-+ -+.||+|-|||.+..+
T Consensus       207 par~vL~~~FG~eWae~yi~~~  228 (233)
T 2vcl_A          207 PVRGYMKNKFGEGRSEAFVNDF  228 (233)
T ss_dssp             -CCHHHHHHHCHHHHHHHHHHT
T ss_pred             cHHHHHHHHcCHHHHHHHHHHc
Confidence            99887 9999999999998753

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00