Citrus Sinensis ID: 020891

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320
Protein Sequence
MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKRLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKYTGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRGPSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYAKKIVEMYNQNGQIDQMLSSK
Secondary Structure (PSIPRED)
ccccccccEEEEEEEccccccccEEEEEccHHHHHHHccccccccccHHHHHHHHHccccEEEEEcccHHHHHHHHHHHHccccccEEEcccccccccHHHHHHHHHHHccccccEEEEEEEcccEEEEEEEcEEEEEEEcccccccccccccccccccccccccccccEEEEEcccccccccccccccEEEEEEcHHHHHHHHHHccccEEEccccccccHHHHHHHcHHHHHHHHccccccccccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHccHHHHHccccHHHHHHHHHHcccccccHHcccc
Secondary Structure Prediction (SSPRO)
ccccccEEEEEEEEcccccccccccEEEccHHHHHHHccccccccHHHHHHHHHHHccccEEEEEccHHHHHHHHHHHHHccccEEEEEEccccccccHHHHHHHHHHHccccccEEEEEEccccEEEEEEccccEEEEEcccccHHHHHHHccccccccHHHHHHHccEEEEccccccccccccccccEEEEEEcccHHHHHHHHcccEEEcccccccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccccccHEEEEEEHHHHHHHHHHHHHHcHHHHHHHHcHHHHHHHHHHcccccHHHHHHHcc
Coil and Loop (DISEMBL)
MLKTGMVEAVVCvqsdpddrlsprpvlartpeevlaakgvkptlspnlnTLALVEAAGVKRLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAassepetvLHYEFMQDYKVHLKHLDghieevpyfclpandlvdviapscyscfDYTNALADLVVGYmgvpkytgismtqhpqyITVRNERGKEMLSLVKNLLEitptissgdrrpfvmetvkaddnakmgrgpsqpapkfVGNLIAFFINlvgpkgleFARYSLDYHTIRNYLHVNRawgkkradkhmPSYAKKIVEMYNQNGQIDQMLSSK
Flexible Loop (DISEMBL)
MLKTGMVEAVVcvqsdpddrlsprpvLARTPEEvlaakgvkptlspnLNTLALVEAAGVKRLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKYTGISMTQHPQYITVRNERGKEMLSLVKNLLeitptissgdrrpfVMETVKAddnakmgrgPSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLhvnrawgkkradKHMPSYAKKIVEMYNQNGQIDQMLSSK
Low Complexity Region (SEG)
MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKRLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKYTGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRGPSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYAKKIVEMYNQNGQIDQMLSSK
Disordered region (IsUnstruct)
*********VVC***************************VKPTLSPNLNTLALVEAAGVKRLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKYTGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTI******************************KFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRA******YAKKIVEM**************
Disordered Region (DISOPRED)
MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKRLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKYTGISMTQHPQYITVRNERGKEMLSLVKNLLEITP*****************************PAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYAKKIVEMYNQ***********
Disordered Region (DISEMBL)
MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKRLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKYTGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRGPSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYAKKIVEMYNQNGQIDQMLSSK
Disordered Region (DISPRO)
*L*TGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKRLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKYTGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRGPSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYAKKIVEMYNQNGQIDQMLS**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKRLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKYTGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRGPSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYAKKIVEMYNQNGQIDQMLSSK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	320	2.2.26 [Sep-21-2011]
Q8GS60	462	7-hydroxymethyl chlorophy	yes	no	1.0	0.692	0.890	1e-172
Q7XTG7	471	7-hydroxymethyl chlorophy	yes	no	0.990	0.673	0.870	1e-167
P46015	397	Uncharacterized protein a	yes	no	0.909	0.732	0.553	2e-91
Q00391	280	Coenzyme F420 hydrogenase	yes	no	0.528	0.603	0.289	1e-11
P80490	291	Coenzyme F420 hydrogenase	yes	no	0.621	0.683	0.243	3e-10
Q60341	287	Coenzyme F420 hydrogenase	yes	no	0.584	0.651	0.262	5e-07
P19499	281	Coenzyme F420 hydrogenase	yes	no	0.531	0.604	0.255	1e-05

>sp|Q8GS60|HCAR_ARATH 7-hydroxymethyl chlorophyll a reductase, chloroplastic OS=Arabidopsis thaliana GN=HCAR PE=1 SV=1

 Score =  605 bits (1561), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 285/320 (89%), Positives = 305/320 (95%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           MLK+ MVEAVVCVQSDP+DRLSPRPVLARTPEEVLAA+GVKPTLSPNLNTL L+EA+GVK
Sbjct: 143 MLKSNMVEAVVCVQSDPEDRLSPRPVLARTPEEVLAARGVKPTLSPNLNTLELIEASGVK 202

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RLLFCGVGCQVQALRSVE HLNLEKLYVLGTNCVDNGTR+GLDKFLKAAS EPETVLHYE
Sbjct: 203 RLLFCGVGCQVQALRSVEQHLNLEKLYVLGTNCVDNGTRDGLDKFLKAASKEPETVLHYE 262

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
           FMQDYKV LKHLDGHIEEVPYF LPANDLVDVIAPSCYSCFDYTNALADLV+GYMGVPKY
Sbjct: 263 FMQDYKVQLKHLDGHIEEVPYFSLPANDLVDVIAPSCYSCFDYTNALADLVIGYMGVPKY 322

Query: 181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRG 240
           +G++MT HPQYITVRNERGKEMLSLV+NLLEITPTISSGDRRPFV ETVKADD AK G+G
Sbjct: 323 SGLNMTDHPQYITVRNERGKEMLSLVENLLEITPTISSGDRRPFVTETVKADDAAKFGQG 382

Query: 241 PSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYA 300
           P+QPAP FVGN+IAF +NLVGPKGLEFARYSLDYHTIRNYL+VNR WGK+RA+ HMPSYA
Sbjct: 383 PAQPAPLFVGNIIAFILNLVGPKGLEFARYSLDYHTIRNYLYVNRKWGKQRANTHMPSYA 442

Query: 301 KKIVEMYNQNGQIDQMLSSK 320
           KKIVEMYN+NGQID+MLS K
Sbjct: 443 KKIVEMYNKNGQIDKMLSKK 462

Probable iron-sulfur flavoprotein that converts 7-hydroxymethyl chlorophyll a to chlorophyll a using ferredoxin as a reducing equivalent. Catalyzes the reduction of a hydroxymethyl group to a methyl group.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: 7EC: .EC: 7EC: .EC: 2

>sp|Q7XTG7|HCAR_ORYSJ 7-hydroxymethyl chlorophyll a reductase, chloroplastic OS=Oryza sativa subsp. japonica GN=HCAR PE=3 SV=2

 Score =  587 bits (1513), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 276/317 (87%), Positives = 300/317 (94%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           MLK  MV+AVVCVQSDPDDRL+P PVLARTP+EV+AAKGVKPTLSPNLNTLALVEAAGVK
Sbjct: 154 MLKANMVDAVVCVQSDPDDRLAPMPVLARTPDEVIAAKGVKPTLSPNLNTLALVEAAGVK 213

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RLLFCGVGCQVQALRSVE +L LEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE
Sbjct: 214 RLLFCGVGCQVQALRSVEKYLGLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 273

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
           FMQDYKVHLKHLDGHIEEVPYFCLPA DLVDVIAPSCYSCFDYTN LADLVVGYMGVPKY
Sbjct: 274 FMQDYKVHLKHLDGHIEEVPYFCLPAKDLVDVIAPSCYSCFDYTNGLADLVVGYMGVPKY 333

Query: 181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRG 240
            G+SMTQHPQYITVRN+RG+EMLSLV+ LLE TPT+SSG R+PFV+ETVKADD AK GRG
Sbjct: 334 PGVSMTQHPQYITVRNDRGREMLSLVEGLLESTPTVSSGVRQPFVIETVKADDEAKQGRG 393

Query: 241 PSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYA 300
           PSQPAP FVGN+IAF +NL+GPKGLEFARYSLDYHTIRNYLHVNRAWGK+RA++H+PSYA
Sbjct: 394 PSQPAPTFVGNVIAFLLNLIGPKGLEFARYSLDYHTIRNYLHVNRAWGKQRAEQHIPSYA 453

Query: 301 KKIVEMYNQNGQIDQML 317
           KKIVE Y+++G+I+ ML
Sbjct: 454 KKIVEAYDKDGRIESML 470

Probable iron-sulfur flavoprotein that converts 7-hydroxymethyl chlorophyll a to chlorophyll a using ferredoxin as a reducing equivalent. Catalyzes the reduction of a hydroxymethyl group to a methyl group.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 1

EC: 7

EC: .

EC: 7

EC: .

EC: 2

>sp|P46015|Y1601_NOSS1 Uncharacterized protein all1601 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=all1601 PE=4 SV=2

 Score =  336 bits (861), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 170/307 (55%), Positives = 210/307 (68%), Gaps = 16/307 (5%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           ML  G+VE VVCVQ+  +DR  P PV+ARTPEE+LAA+  KPTLSPNL+ L  VE +G+K
Sbjct: 103 MLNHGLVEGVVCVQNSKEDRFQPMPVIARTPEEILAARVNKPTLSPNLSILEQVEKSGMK 162

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RLL  GVGCQ+QALR+VE  L LEKLYVLGT CVDN TR GL KFL+  S  PETV+HYE
Sbjct: 163 RLLVIGVGCQIQALRAVEKKLGLEKLYVLGTPCVDNVTRAGLQKFLETTSRSPETVVHYE 222

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
           FMQD+++H KH DG IE+VP+F L  N L DV APSC SCFDY N+LADLVVGYMG P  
Sbjct: 223 FMQDFRIHFKHEDGSIEKVPFFGLKTNQLKDVFAPSCMSCFDYVNSLADLVVGYMGAPFG 282

Query: 181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRG 240
                    Q+I VRN+ GKEML LV+N L+  P +S G+R+  V + + A D       
Sbjct: 283 W--------QWILVRNDTGKEMLDLVQNQLDTQPVMSEGNRQEAVQQGISAYDKGVT--- 331

Query: 241 PSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYA 300
                P +V  ++   I+ +GPKGLE+AR+S+D H  RNYL V R   +K A  H+P +A
Sbjct: 332 ----LPMWVAKIMGVVIDKIGPKGLEYARFSIDSHFTRNYLFVKRNHPEKLA-AHVPEFA 386

Query: 301 KKIVEMY 307
           K+IV  Y
Sbjct: 387 KRIVGQY 393

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|Q00391|FRHB_METVO Coenzyme F420 hydrogenase subunit beta OS=Methanococcus voltae GN=frhB PE=3 SV=1

 Score = 70.9 bits (172), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 61/211 (28%), Positives = 97/211 (45%), Gaps = 42/211 (19%)

Query: 11  VCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLA-LVEAAGVKRLLFCGVGC 69
           V V +D +D  +  P +A TPEEVL A G K T+SPN++ L   V    ++++   G  C
Sbjct: 45  VSVAADTEDGCNAAPKVATTPEEVLNAAGAKYTVSPNVSVLKDAVREYALEKVGIVGTPC 104

Query: 70  QVQALRSVEHH----LNLEKLYVLGTNCVDNGTREG------------LDKFLKAASSEP 113
           QVQA+R +  +     + +   V+G  C++N + EG            +D  LK    + 
Sbjct: 105 QVQAIRKLIKYPMGFRHTDSRIVMGIFCMENFSYEGMKAIVEEYAGIRMDDVLKTDIGKG 164

Query: 114 ETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVG 173
           +  ++ ++     V LK  D H+ E                 SC+ C DYT  LAD+  G
Sbjct: 165 KFWVYSKYGDVKSVKLK--DTHMYE---------------QKSCHICTDYTAELADISTG 207

Query: 174 YMGVPKYTGISMTQHPQYITVRNERGKEMLS 204
            +G P   G S       I +R E+G+  ++
Sbjct: 208 SVGSPD--GWST------IFIRTEKGEAYIN 230

Reduces the physiological low-potential two-electron acceptor coenzyme F420, and the artificial one-electron acceptor methylviologen.

Methanococcus voltae (taxid: 2188)

EC: 1

EC: .

EC: 1

EC: 2

EC: .

EC: 9

EC: 8

EC: .

EC: 1

>sp|P80490|FRHB_METBF Coenzyme F420 hydrogenase subunit beta OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=frhB PE=1 SV=2

 Score = 66.6 bits (161), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 54/222 (24%), Positives = 105/222 (47%), Gaps = 23/222 (10%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLA-LVEAAGVK 60
           L+ G ++  + V  + D    P+P +A T EE+L A+G + ++SP ++ L     + G+ 
Sbjct: 41  LEEGFIDGTI-VAGEGDKPWQPKPEVAMTREEILKARGTRYSISPQISWLKEATRSFGLD 99

Query: 61  RLLFCGVGCQVQALRSVE-HHLNLEKL-----YVLGTNCVDNGTREGLDKFLKAASSEPE 114
           ++   GV CQ+QA+R  + + +N+  +     + +G  C++N   + L   ++  +++  
Sbjct: 100 KVGVTGVCCQMQAVRKAQLYPINMRDVPGKVAFTVGLFCMENFPYKSLQSIVEDHANQSL 159

Query: 115 TVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGY 174
             +    +   K  +    G++  VP   L A    +   P C+ C DY + LAD+  G 
Sbjct: 160 GSVKKMEITKGKFWVYTERGNVATVP---LKATHKYE--QPGCHVCLDYVSNLADISTGS 214

Query: 175 MGVPKYTGISMTQHPQYITVRNERGKEMLS--LVKNLLEITP 214
           +G P   G S       + +R + G E+ S  +   + E  P
Sbjct: 215 VGSPD--GWST------VFIRTKVGNEIWSKAVADGMFETKP 248

Reduces the physiological low-potential two-electron acceptor coenzyme F420, and the artificial one-electron acceptor methylviologen.

Methanosarcina barkeri (strain Fusaro / DSM 804) (taxid: 269797)

EC: 1

EC: .

EC: 1

EC: 2

EC: .

EC: 9

EC: 8

EC: .

EC: 1

>sp|Q60341|FRHB_METJA Coenzyme F420 hydrogenase subunit beta OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=frhB PE=3 SV=1

 Score = 55.5 bits (132), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 56/213 (26%), Positives = 96/213 (45%), Gaps = 26/213 (12%)

Query: 13  VQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTL-ALVEAAGVKRLLFCGVGCQV 71
           + +D        P +A TPEEVL A G K T+ PN++ L + V   G +++   G  CQV
Sbjct: 52  IVADNAGEFKAVPKVATTPEEVLEAAGTKYTVCPNISVLKSAVREYGCEKIGVVGTPCQV 111

Query: 72  QALRSVE------HHLNLEKLYVLGTNCVDNGTREGLDKFLKA-ASSEPETVLHYEFMQ- 123
           +A+R +        H+  +   ++G  C++N    GL   ++     + E V+  +  + 
Sbjct: 112 RAVRKLMKYPVGFRHVPDKIALIIGIFCMENFPYYGLKLIVEEHCGVKMEDVVKMDIGKG 171

Query: 124 DYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKYTGI 183
            + V+ +       E     L      + IA  C+ C DYT  LAD+  G +G P   G 
Sbjct: 172 KFWVYTRW-----GETKAIKLKETHPYEQIA--CHVCTDYTAELADISTGSVGSP--DGW 222

Query: 184 SMTQHPQYITVRNERGKEMLS--LVKNLLEITP 214
           S       + +R  +G+E+ +  +    LE+ P
Sbjct: 223 ST------VFIRTAKGEEIFNKMVEDGYLEVKP 249

Reduces the physiological low-potential two-electron acceptor coenzyme F420, and the artificial one-electron acceptor methylviologen.

Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232)

EC: 1

EC: .

EC: 1

EC: 2

EC: .

EC: 9

EC: 8

EC: .

EC: 1

>sp|P19499|FRHB_METTH Coenzyme F420 hydrogenase subunit beta OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=frhB PE=1 SV=4

 Score = 50.8 bits (120), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 78/184 (42%), Gaps = 14/184 (7%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTL-ALVEAAGVK 60
           L  G++E  V V     +   P P++A T +E+ AA G K T SPN+  L   V   G++
Sbjct: 37  LDEGIIEGAV-VAGPGKEFWKPEPMVAMTSDELKAAAGTKYTFSPNVLMLKKAVRQYGIE 95

Query: 61  RLLFCGVGCQVQALRSVEHH-----LNLEKLYVL-GTNCVDNGTREGLDKFLKAASSEPE 114
           +L    + CQ   +R  + +        +K+ +L G  C++N     L  F+        
Sbjct: 96  KLGTVAIPCQTMGIRKAQTYPFGVRFVADKIKLLVGIYCMENFPYTSLQTFICEKLG--- 152

Query: 115 TVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGY 174
             L+ E ++   +       + ++  Y  LP  +        C  C DY   LAD+  G 
Sbjct: 153 --LNMELVEKMDIGKGKFWVYTQDDVY-TLPLKETHGYEQAGCKICKDYVAELADVSTGS 209

Query: 175 MGVP 178
           +G P
Sbjct: 210 VGSP 213

Reduces the physiological low-potential two-electron acceptor coenzyme F420, and the artificial one-electron acceptor methylviologen.

Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) (taxid: 187420)

EC: 1

EC: .

EC: 1

EC: 2

EC: .

EC: 9

EC: 8

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	320
356534864	452	PREDICTED: uncharacterized protein all16	1.0	0.707	0.903	1e-177
225433343	457	PREDICTED: uncharacterized protein all16	1.0	0.700	0.903	1e-175
255554300	458	Coenzyme F420 hydrogenase subunit beta,	1.0	0.698	0.893	1e-173
224110688	456	predicted protein [Populus trichocarpa]	1.0	0.701	0.893	1e-172
356577586	452	PREDICTED: uncharacterized protein all16	1.0	0.707	0.881	1e-172
449433213	459	PREDICTED: 7-hydroxymethyl chlorophyll a	0.996	0.694	0.887	1e-171
449487600	459	PREDICTED: LOW QUALITY PROTEIN: 7-hydrox	0.996	0.694	0.887	1e-171
297848696	461	coenzyme F420 hydrogenase family [Arabid	1.0	0.694	0.893	1e-171
30678943	462	coenzyme F420 hydrogenase beta subunit [	1.0	0.692	0.890	1e-171
326525733	471	predicted protein [Hordeum vulgare subsp	0.990	0.673	0.873	1e-166

>gi|356534864|ref|XP_003535971.1| PREDICTED: uncharacterized protein all1601-like [Glycine max]

 Score =  626 bits (1615), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 289/320 (90%), Positives = 313/320 (97%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           MLK+GMVEAV+CVQSDPDDR +PRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK
Sbjct: 133 MLKSGMVEAVICVQSDPDDRFAPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 192

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RLLFCGVGCQVQALRSVEHHLNL+KLYVLGTNCVDNGTR+GLDKFLKAAS  PETVLHYE
Sbjct: 193 RLLFCGVGCQVQALRSVEHHLNLDKLYVLGTNCVDNGTRQGLDKFLKAASQSPETVLHYE 252

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
           FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY
Sbjct: 253 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 312

Query: 181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRG 240
           +GI MTQHPQY+TVRNERG+EMLSL++NLLEITPTIS+GDRRPFVMETVKADD AK+GRG
Sbjct: 313 SGIGMTQHPQYVTVRNERGREMLSLIENLLEITPTISTGDRRPFVMETVKADDEAKLGRG 372

Query: 241 PSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYA 300
           PSQPAPKF+GNL+AF +NL+GPKGLEFARYSLDYHTIRNYLHVNR WGK+RAD+HMP+YA
Sbjct: 373 PSQPAPKFIGNLLAFILNLIGPKGLEFARYSLDYHTIRNYLHVNRMWGKERADRHMPTYA 432

Query: 301 KKIVEMYNQNGQIDQMLSSK 320
           KKIV++YNQNGQI++MLS+K
Sbjct: 433 KKIVDLYNQNGQIEKMLSNK 452

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225433343|ref|XP_002285592.1| PREDICTED: uncharacterized protein all1601 [Vitis vinifera] gi|297741879|emb|CBI33314.3| unnamed protein product [Vitis vinifera]

 Score =  620 bits (1600), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 289/320 (90%), Positives = 312/320 (97%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           MLK GMVEAV+CVQSDP+DRLSPRPVLARTP+EVLAAKGVKPTLSPNLNTLALVEAAGVK
Sbjct: 138 MLKAGMVEAVICVQSDPEDRLSPRPVLARTPDEVLAAKGVKPTLSPNLNTLALVEAAGVK 197

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RLLFCGVGCQVQALRSVE HLNL+KLYVLGTNCVDNGTREGLDKFL AASSEPETVLHYE
Sbjct: 198 RLLFCGVGCQVQALRSVEQHLNLDKLYVLGTNCVDNGTREGLDKFLNAASSEPETVLHYE 257

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
           FMQDYKVHLKHLDGHIEEVPYFCLPAN+LVDVIAPSCYSCFDYTNALADLVVGYMGVPKY
Sbjct: 258 FMQDYKVHLKHLDGHIEEVPYFCLPANELVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 317

Query: 181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRG 240
            G+SMTQHPQY+TVRNERG+EMLSLV+NLLEI PT SSGDRRPFVMETVKADDNAK+G+G
Sbjct: 318 PGVSMTQHPQYVTVRNERGREMLSLVENLLEIIPTTSSGDRRPFVMETVKADDNAKLGKG 377

Query: 241 PSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYA 300
           PSQPAPKFVGNLIAF +NL+GPKGLEFARYSLDYHTIRNY++VNR WGK+RAD+HMPSYA
Sbjct: 378 PSQPAPKFVGNLIAFILNLIGPKGLEFARYSLDYHTIRNYIYVNRMWGKQRADRHMPSYA 437

Query: 301 KKIVEMYNQNGQIDQMLSSK 320
           KK+V++YNQNG+ID+MLS+K
Sbjct: 438 KKLVDLYNQNGEIDKMLSNK 457

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255554300|ref|XP_002518190.1| Coenzyme F420 hydrogenase subunit beta, putative [Ricinus communis] gi|223542786|gb|EEF44323.1| Coenzyme F420 hydrogenase subunit beta, putative [Ricinus communis]

 Score =  613 bits (1582), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 286/320 (89%), Positives = 305/320 (95%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           MLK  MV+AV+CVQSDP+DRLSPRPVLARTP+EVLAAKGVKPTLSPNLNTLALVEA+GVK
Sbjct: 139 MLKADMVDAVICVQSDPEDRLSPRPVLARTPQEVLAAKGVKPTLSPNLNTLALVEASGVK 198

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAAS EPETVLHYE
Sbjct: 199 RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASDEPETVLHYE 258

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
           FMQDYKVHLKHLDG IEEVPYFCLPA DLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY
Sbjct: 259 FMQDYKVHLKHLDGRIEEVPYFCLPATDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 318

Query: 181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRG 240
            G+SMTQHPQY+TVRN+RG+EML LV+ LLEITPTISSGDRRPFVMETVKADDNAK+G+G
Sbjct: 319 AGVSMTQHPQYVTVRNDRGREMLDLVRGLLEITPTISSGDRRPFVMETVKADDNAKLGKG 378

Query: 241 PSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYA 300
           PSQ APKFVGN +AF +NL+GPKGLEFARYSLDYHTIRNYL+ NRAWGK RA++H PSYA
Sbjct: 379 PSQSAPKFVGNFLAFILNLIGPKGLEFARYSLDYHTIRNYLYTNRAWGKARAERHTPSYA 438

Query: 301 KKIVEMYNQNGQIDQMLSSK 320
           KKIVEMYNQNGQIDQML +K
Sbjct: 439 KKIVEMYNQNGQIDQMLQNK 458

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224110688|ref|XP_002315601.1| predicted protein [Populus trichocarpa] gi|222864641|gb|EEF01772.1| predicted protein [Populus trichocarpa]

 Score =  610 bits (1573), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 286/320 (89%), Positives = 304/320 (95%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           MLK+GMVEAV+CVQSDP+DR SPRPVLARTP+EVLAAKGVKPTLSPNLNTLALVEAAGVK
Sbjct: 137 MLKSGMVEAVICVQSDPEDRFSPRPVLARTPDEVLAAKGVKPTLSPNLNTLALVEAAGVK 196

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RLLFCGVGCQVQALRSVEHHLNL+KLYVLGTNCVDNGTREGLDKFLKAAS EPETVLHYE
Sbjct: 197 RLLFCGVGCQVQALRSVEHHLNLDKLYVLGTNCVDNGTREGLDKFLKAASDEPETVLHYE 256

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
           FMQDYKVHLKHLDG IEEVPYFCLPAN+LVDVIAPSCYSCFDYTNALADLVVGYMGVPKY
Sbjct: 257 FMQDYKVHLKHLDGRIEEVPYFCLPANELVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 316

Query: 181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRG 240
            G+SMTQHPQYITVRNERG+EM+ LVKNLLEITPTI+SGDRRPFVMETV ADDNAK+G+G
Sbjct: 317 PGVSMTQHPQYITVRNERGREMIGLVKNLLEITPTINSGDRRPFVMETVNADDNAKLGKG 376

Query: 241 PSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYA 300
           PSQP PKF+GN IAF +NLVGPKGLEFARYSLDYHTIRNYL+ NR WGK RAD+H PSYA
Sbjct: 377 PSQPLPKFIGNFIAFLLNLVGPKGLEFARYSLDYHTIRNYLYTNRTWGKDRADRHTPSYA 436

Query: 301 KKIVEMYNQNGQIDQMLSSK 320
           KKIVE YN+NGQID ML +K
Sbjct: 437 KKIVESYNKNGQIDLMLQNK 456

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356577586|ref|XP_003556905.1| PREDICTED: uncharacterized protein all1601-like [Glycine max]

 Score =  609 bits (1570), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 282/320 (88%), Positives = 307/320 (95%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           MLK+GMVEAV+CVQSDPDD+ +PRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK
Sbjct: 133 MLKSGMVEAVICVQSDPDDKFAPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 192

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RLLFC VGCQVQALRSVEHHLNL+KLYVLGTNCVDNGTREGLDKFLKAAS  PE VLHYE
Sbjct: 193 RLLFCVVGCQVQALRSVEHHLNLDKLYVLGTNCVDNGTREGLDKFLKAASQSPEIVLHYE 252

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
           FMQDYKVHLKHLDGHIEEVPYFCLP NDLVDVIAPSCYSCFDYTNAL DLVVGYMGVPK+
Sbjct: 253 FMQDYKVHLKHLDGHIEEVPYFCLPTNDLVDVIAPSCYSCFDYTNALVDLVVGYMGVPKH 312

Query: 181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRG 240
           +GI MTQHPQY+TVRN+RG+EMLSL++ LLEITPTIS+G+RRPFVMETVKADD AK+GRG
Sbjct: 313 SGIGMTQHPQYVTVRNKRGREMLSLIEKLLEITPTISTGNRRPFVMETVKADDEAKLGRG 372

Query: 241 PSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYA 300
           PSQPAPKF+G+L+AF +NLVGPKGLEFARYSLDYHTIRNYLHVNR WGK+RADKHMP+YA
Sbjct: 373 PSQPAPKFIGSLLAFILNLVGPKGLEFARYSLDYHTIRNYLHVNRMWGKERADKHMPTYA 432

Query: 301 KKIVEMYNQNGQIDQMLSSK 320
           KKIV+ YNQNGQI++MLS+K
Sbjct: 433 KKIVDSYNQNGQIEKMLSNK 452

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449433213|ref|XP_004134392.1| PREDICTED: 7-hydroxymethyl chlorophyll a reductase, chloroplastic-like [Cucumis sativus]

 Score =  608 bits (1568), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 283/319 (88%), Positives = 311/319 (97%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           MLK+GMVEAVVCVQSDP+DRLSPRP+LARTPEEVLAA+GVKPTLSPNLNTLALVEAAGVK
Sbjct: 139 MLKSGMVEAVVCVQSDPEDRLSPRPILARTPEEVLAARGVKPTLSPNLNTLALVEAAGVK 198

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RLLFCGVGCQVQALRSVE HLNLEKLYVLGTNCVDNGTREGLDKFLKAAS+EPETVLHYE
Sbjct: 199 RLLFCGVGCQVQALRSVEQHLNLEKLYVLGTNCVDNGTREGLDKFLKAASTEPETVLHYE 258

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
           FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY
Sbjct: 259 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 318

Query: 181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRG 240
           +GISMTQHPQYITVRNERG+EML LV+  LEITPTIS+G+RRP VMETVKADD+AK+G+G
Sbjct: 319 SGISMTQHPQYITVRNERGREMLGLVEQYLEITPTISNGNRRPLVMETVKADDDAKLGKG 378

Query: 241 PSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYA 300
           PSQPAPKF+GN+IAFF+NL+GPKGLEFARYSLDYHTIRN+L+V+R WGK+RADKH P+YA
Sbjct: 379 PSQPAPKFIGNIIAFFLNLIGPKGLEFARYSLDYHTIRNHLYVSRIWGKQRADKHEPTYA 438

Query: 301 KKIVEMYNQNGQIDQMLSS 319
           KKIV++YNQ G+ID++LS+
Sbjct: 439 KKIVDLYNQKGEIDRILSN 457

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449487600|ref|XP_004157707.1| PREDICTED: LOW QUALITY PROTEIN: 7-hydroxymethyl chlorophyll a reductase, chloroplastic-like [Cucumis sativus]

 Score =  608 bits (1568), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 283/319 (88%), Positives = 311/319 (97%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           MLK+GMVEAVVCVQSDP+DRLSPRP+LARTPEEVLAA+GVKPTLSPNLNTLALVEAAGVK
Sbjct: 139 MLKSGMVEAVVCVQSDPEDRLSPRPILARTPEEVLAARGVKPTLSPNLNTLALVEAAGVK 198

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RLLFCGVGCQVQALRSVE HLNLEKLYVLGTNCVDNGTREGLDKFLKAAS+EPETVLHYE
Sbjct: 199 RLLFCGVGCQVQALRSVEQHLNLEKLYVLGTNCVDNGTREGLDKFLKAASTEPETVLHYE 258

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
           FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY
Sbjct: 259 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 318

Query: 181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRG 240
           +GISMTQHPQYITVRNERG+EML LV+  LEITPTIS+G+RRP VMETVKADD+AK+G+G
Sbjct: 319 SGISMTQHPQYITVRNERGREMLGLVEQYLEITPTISNGNRRPLVMETVKADDDAKLGKG 378

Query: 241 PSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYA 300
           PSQPAPKF+GN+IAFF+NL+GPKGLEFARYSLDYHTIRN+L+V+R WGK+RADKH P+YA
Sbjct: 379 PSQPAPKFIGNIIAFFLNLIGPKGLEFARYSLDYHTIRNHLYVSRIWGKQRADKHEPTYA 438

Query: 301 KKIVEMYNQNGQIDQMLSS 319
           KKIV++YNQ G+ID++LS+
Sbjct: 439 KKIVDLYNQKGEIDRILSN 457

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297848696|ref|XP_002892229.1| coenzyme F420 hydrogenase family [Arabidopsis lyrata subsp. lyrata] gi|297338071|gb|EFH68488.1| coenzyme F420 hydrogenase family [Arabidopsis lyrata subsp. lyrata]

 Score =  607 bits (1566), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 286/320 (89%), Positives = 305/320 (95%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           MLK+ MVEAVVCVQSDP+DRLSPRPVLARTPEEVLAA+GVKPTLSPNLNTL L+EA+GVK
Sbjct: 142 MLKSNMVEAVVCVQSDPEDRLSPRPVLARTPEEVLAARGVKPTLSPNLNTLELIEASGVK 201

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RLLFCGVGCQVQALRSVE HLNLEKLYVLGTNCVDNGTR+GLDKFLKAAS EPETVLHYE
Sbjct: 202 RLLFCGVGCQVQALRSVEQHLNLEKLYVLGTNCVDNGTRDGLDKFLKAASKEPETVLHYE 261

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
           FMQDYKV LKHLDGHIEEVPYF LPANDLVDVIAPSCYSCFDYTNALADLV+GYMGVPKY
Sbjct: 262 FMQDYKVQLKHLDGHIEEVPYFSLPANDLVDVIAPSCYSCFDYTNALADLVIGYMGVPKY 321

Query: 181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRG 240
           +G++MT HPQYITVRNERGKEMLSLV+NLLEITPTISSGDRRPFV ETVKADDNAK GRG
Sbjct: 322 SGLNMTDHPQYITVRNERGKEMLSLVENLLEITPTISSGDRRPFVTETVKADDNAKFGRG 381

Query: 241 PSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYA 300
           P+QPAP FVGN+IAF ++LVGPKGLEFARYSLDYHTIRNYLHVNR WGK+RA+ HMPSYA
Sbjct: 382 PAQPAPIFVGNIIAFILSLVGPKGLEFARYSLDYHTIRNYLHVNRKWGKQRANIHMPSYA 441

Query: 301 KKIVEMYNQNGQIDQMLSSK 320
           KKIVEMYN+NG ID+MLS K
Sbjct: 442 KKIVEMYNKNGHIDKMLSRK 461

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30678943|ref|NP_171956.2| coenzyme F420 hydrogenase beta subunit [Arabidopsis thaliana] gi|75150253|sp|Q8GS60.1|HCAR_ARATH RecName: Full=7-hydroxymethyl chlorophyll a reductase, chloroplastic; Flags: Precursor gi|25083091|gb|AAN72040.1| unknown protein [Arabidopsis thaliana] gi|26451024|dbj|BAC42618.1| unknown protein [Arabidopsis thaliana] gi|30387563|gb|AAP31947.1| At1g04620 [Arabidopsis thaliana] gi|332189601|gb|AEE27722.1| coenzyme F420 hydrogenase beta subunit [Arabidopsis thaliana]

 Score =  605 bits (1561), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 285/320 (89%), Positives = 305/320 (95%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           MLK+ MVEAVVCVQSDP+DRLSPRPVLARTPEEVLAA+GVKPTLSPNLNTL L+EA+GVK
Sbjct: 143 MLKSNMVEAVVCVQSDPEDRLSPRPVLARTPEEVLAARGVKPTLSPNLNTLELIEASGVK 202

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RLLFCGVGCQVQALRSVE HLNLEKLYVLGTNCVDNGTR+GLDKFLKAAS EPETVLHYE
Sbjct: 203 RLLFCGVGCQVQALRSVEQHLNLEKLYVLGTNCVDNGTRDGLDKFLKAASKEPETVLHYE 262

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
           FMQDYKV LKHLDGHIEEVPYF LPANDLVDVIAPSCYSCFDYTNALADLV+GYMGVPKY
Sbjct: 263 FMQDYKVQLKHLDGHIEEVPYFSLPANDLVDVIAPSCYSCFDYTNALADLVIGYMGVPKY 322

Query: 181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRG 240
           +G++MT HPQYITVRNERGKEMLSLV+NLLEITPTISSGDRRPFV ETVKADD AK G+G
Sbjct: 323 SGLNMTDHPQYITVRNERGKEMLSLVENLLEITPTISSGDRRPFVTETVKADDAAKFGQG 382

Query: 241 PSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYA 300
           P+QPAP FVGN+IAF +NLVGPKGLEFARYSLDYHTIRNYL+VNR WGK+RA+ HMPSYA
Sbjct: 383 PAQPAPLFVGNIIAFILNLVGPKGLEFARYSLDYHTIRNYLYVNRKWGKQRANTHMPSYA 442

Query: 301 KKIVEMYNQNGQIDQMLSSK 320
           KKIVEMYN+NGQID+MLS K
Sbjct: 443 KKIVEMYNKNGQIDKMLSKK 462

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326525733|dbj|BAJ88913.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  588 bits (1517), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 277/317 (87%), Positives = 298/317 (94%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           MLK  MV+AVVCVQSDPDDR +PRPVLARTPEEV+AAKGVKPTLSPNLNTLALVEAAGVK
Sbjct: 151 MLKANMVDAVVCVQSDPDDRFAPRPVLARTPEEVIAAKGVKPTLSPNLNTLALVEAAGVK 210

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RLLFCGVGCQVQALRSVE +L LEKLYVLGTNCVDNGTREGLDKFL AASSEPETVLHYE
Sbjct: 211 RLLFCGVGCQVQALRSVEKYLGLEKLYVLGTNCVDNGTREGLDKFLNAASSEPETVLHYE 270

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
           FMQDYKVHLKHLDGHIEEVPYF LPANDLVDVIAPSCYSCFDYTN LADLVVGYMGVPKY
Sbjct: 271 FMQDYKVHLKHLDGHIEEVPYFSLPANDLVDVIAPSCYSCFDYTNGLADLVVGYMGVPKY 330

Query: 181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRG 240
           +G+SMTQHPQYITVRNERG+EMLSLV++LLE TPT+SSG R+PFVMETVKADD AKMG+G
Sbjct: 331 SGVSMTQHPQYITVRNERGREMLSLVESLLESTPTVSSGARQPFVMETVKADDAAKMGKG 390

Query: 241 PSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYA 300
           PS PAP FVGN+IAF +NL+GPKGLEF RYSLDYHTIRNYL+VNRAWG  RA++HMPSYA
Sbjct: 391 PSNPAPIFVGNIIAFLLNLIGPKGLEFGRYSLDYHTIRNYLYVNRAWGSSRAEQHMPSYA 450

Query: 301 KKIVEMYNQNGQIDQML 317
           KKIVE YN++G+ID ML
Sbjct: 451 KKIVEAYNKDGRIDSML 467

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	320
TAIR|locus:2197848	462	HCAR "7-hydroxymethyl chloroph	1.0	0.692	0.890	4.9e-156
TIGR_CMR|DET_0214	428	DET_0214 "iron-sulfur cluster-	0.531	0.397	0.255	0.00083

TAIR|locus:2197848 HCAR "7-hydroxymethyl chlorophyll a (HMChl) reductase" [Arabidopsis thaliana (taxid:3702)]

 Score = 1521 (540.5 bits), Expect = 4.9e-156, P = 4.9e-156
 Identities = 285/320 (89%), Positives = 305/320 (95%)

Query:     1 MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
             MLK+ MVEAVVCVQSDP+DRLSPRPVLARTPEEVLAA+GVKPTLSPNLNTL L+EA+GVK
Sbjct:   143 MLKSNMVEAVVCVQSDPEDRLSPRPVLARTPEEVLAARGVKPTLSPNLNTLELIEASGVK 202

Query:    61 RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
             RLLFCGVGCQVQALRSVE HLNLEKLYVLGTNCVDNGTR+GLDKFLKAAS EPETVLHYE
Sbjct:   203 RLLFCGVGCQVQALRSVEQHLNLEKLYVLGTNCVDNGTRDGLDKFLKAASKEPETVLHYE 262

Query:   121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
             FMQDYKV LKHLDGHIEEVPYF LPANDLVDVIAPSCYSCFDYTNALADLV+GYMGVPKY
Sbjct:   263 FMQDYKVQLKHLDGHIEEVPYFSLPANDLVDVIAPSCYSCFDYTNALADLVIGYMGVPKY 322

Query:   181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRG 240
             +G++MT HPQYITVRNERGKEMLSLV+NLLEITPTISSGDRRPFV ETVKADD AK G+G
Sbjct:   323 SGLNMTDHPQYITVRNERGKEMLSLVENLLEITPTISSGDRRPFVTETVKADDAAKFGQG 382

Query:   241 PSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYA 300
             P+QPAP FVGN+IAF +NLVGPKGLEFARYSLDYHTIRNYL+VNR WGK+RA+ HMPSYA
Sbjct:   383 PAQPAPLFVGNIIAFILNLVGPKGLEFARYSLDYHTIRNYLYVNRKWGKQRANTHMPSYA 442

Query:   301 KKIVEMYNQNGQIDQMLSSK 320
             KKIVEMYN+NGQID+MLS K
Sbjct:   443 KKIVEMYNKNGQIDKMLSKK 462

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0050454 "coenzyme F420 hydrogenase activity" evidence=ISS

GO:0015994 "chlorophyll metabolic process" evidence=IDA

GO:0033354 "chlorophyll cycle" evidence=IDA

GO:0090415 "7-hydroxymethyl chlorophyll a reductase activity" evidence=IDA

TIGR_CMR|DET_0214 DET_0214 "iron-sulfur cluster-binding protein/coenzyme F420-reducing hydrogenase, beta subunit, putative" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 114 (45.2 bits), Expect = 0.00083, P = 0.00083
 Identities = 46/180 (25%), Positives = 75/180 (41%)

Query:     2 LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVE-AAGVK 60
             L+TG+++  +   + P   L+P   +ART EE+  A G K    P     A+ E AA   
Sbjct:   119 LETGLIDGALVSIAPPFSPLTPTGFIARTAEELKQAAGSK--YCPVAANTAISEIAARPG 176

Query:    61 RLLFCGVGCQVQALRSVEHHLNL--EKLYV-LGTNCVDNGTREGLDKFLKAASSEPETVL 117
             R    G+ C +QA+R  E    +  E++ + LG  C    + +G +  LK      ++V 
Sbjct:   177 RYAVAGLPCHIQAIRKAERQNPVLQERIVLHLGIVCSSTMSFKGTEYILKKQGINKDSVT 236

Query:   118 HYEFMQDY---KVHLKHLDGHIEEVPYFCLPANDLVDVIAPS-CYSCFDYTNALADLVVG 173
                +  +     + L+   G    +P              P  C  C D  N LAD+ +G
Sbjct:   237 SLSYRTNGWPGNMRLETCGGTTLRLPLKAYHPYHGHGFFTPRRCLICNDQLNELADISLG 296


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.136   0.406    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      320       320   0.00084  116 3  11 22  0.39    34
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  606 (64 KB)
  Total size of DFA:  218 KB (2121 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  26.10u 0.13s 26.23t   Elapsed:  00:00:01
  Total cpu time:  26.10u 0.13s 26.23t   Elapsed:  00:00:01
  Start:  Fri May 10 14:21:57 2013   End:  Fri May 10 14:21:58 2013

GO:0009055 "electron carrier activity" evidence=ISS

GO:0050454 "coenzyme F420 hydrogenase activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8GS60	HCAR_ARATH	1, ., 1, 7, ., 7, ., 2	0.8906	1.0	0.6926	yes	no
Q7XTG7	HCAR_ORYSJ	1, ., 1, 7, ., 7, ., 2	0.8706	0.9906	0.6730	yes	no
P46015	Y1601_NOSS1	No assigned EC number	0.5537	0.9093	0.7329	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	320
COG1035	332	COG1035, FrhB, Coenzyme F420-reducing hydrogenase,	6e-44
pfam04432	162	pfam04432, FrhB_FdhB_C, Coenzyme F420 hydrogenase/	1e-39
PRK09325	282	PRK09325, PRK09325, coenzyme F420-reducing hydroge	9e-16
pfam04422	82	pfam04422, FrhB_FdhB_N, Coenzyme F420 hydrogenase/	1e-15
TIGR03289	275	TIGR03289, frhB, coenzyme F420 hydrogenase, subuni	9e-13
PRK09326	341	PRK09326, PRK09326, F420H2 dehydrogenase subunit F	1e-08

>gnl|CDD|223966 COG1035, FrhB, Coenzyme F420-reducing hydrogenase, beta subunit [Energy production and conversion]

 Score =  152 bits (387), Expect = 6e-44
 Identities = 70/227 (30%), Positives = 107/227 (47%), Gaps = 27/227 (11%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAA--- 57
            L+ G+++ VV V S  ++   P PV+A TPEE+L   G K T+SPNL   AL EA    
Sbjct: 84  ALEEGLIDGVVVVGS-GEEEWKPIPVVATTPEELLETAGSKYTISPNL--SALKEAVRKY 140

Query: 58  GVKRLLFCGVGCQVQALRSVEHHLNLEK------LYVLGTNCVDNGTREGLDKFLKAASS 111
           G++R+   G  CQ+QA+R ++      K      +YV+G  C++N + EGL KFL+    
Sbjct: 141 GLERVAVVGTPCQIQAVRKLQKFDLGLKHRREKIVYVIGLFCMENFSYEGLKKFLEEDLG 200

Query: 112 EPETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLV 171
                +    ++  K  ++  DG  E       P  +  +     C  C D+   LAD+ 
Sbjct: 201 VDPEDVEKMDIRKGKFVVELKDG--EVKEI---PLKETEEYGPEGCRVCTDFVAELADIS 255

Query: 172 VGYMGVPKYTGISMTQHPQYITVRNERGKEMLSLV--KNLLEITPTI 216
           VG +G P             + VR E+G+E+L       LLE+    
Sbjct: 256 VGSVGSPDGW--------STVLVRTEKGEEILDGAVEAGLLEVKEIE 294

Length = 332

>gnl|CDD|218086 pfam04432, FrhB_FdhB_C, Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus

 Score =  136 bits (345), Expect = 1e-39
 Identities = 51/174 (29%), Positives = 78/174 (44%), Gaps = 22/174 (12%)

Query: 56  AAGVKRLLFCGVGCQVQALRSVEH---HLNLEKLYVLGTNCVDNGTREGLDKFLKA-ASS 111
             G++++   G  CQ+QALR ++     L    +  +G  C  N + EGL K+L+     
Sbjct: 1   KYGLEKVAVVGTPCQIQALRKLQKRNPDLLDNIVLTIGLFCGGNFSYEGLRKYLEEKYGV 60

Query: 112 EPETVLHYEFMQD-YKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADL 170
           +P+ V+  E  +  + V LK   G         +P ++L D   P C  CFDYT  LAD+
Sbjct: 61  DPDDVVKMEIRKGKFIVELKD-GGEKS------IPLDELGDYRRPGCRVCFDYTAELADI 113

Query: 171 VVGYMGVPKYTGISMTQHPQYITVRNERGKEMLSLVKN--LLEITPTISSGDRR 222
            VG +G P             + VR E+G+E+L        +E  P    G  R
Sbjct: 114 SVGDVGSPDGW--------STVLVRTEKGEELLDKAVEAGYIETKPIEEKGILR 159

Coenzyme F420 hydrogenase (EC:1.12.99.1) reduces the low-potential two-electron acceptor coenzyme F420. This family contains the C termini of F420 hydrogenase and dehydrogenase beta subunits. The N terminus of Methanobacterium formicicum formate dehydrogenase beta chain (EC:1.2.1.2) is also a member of this family. This region is often found in association with the 4Fe-4S binding domain, fer4 (pfam00037). Length = 162

>gnl|CDD|236466 PRK09325, PRK09325, coenzyme F420-reducing hydrogenase subunit beta; Validated

 Score = 75.8 bits (187), Expect = 9e-16
 Identities = 65/227 (28%), Positives = 108/227 (47%), Gaps = 31/227 (13%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAA---G 58
           L+ G+++ V+ V  D ++   P P +A TPEE+L A G K T+SPN++ L   EA    G
Sbjct: 37  LEEGIIDGVI-VAGDGEEPWKPVPKVATTPEEILEAAGTKYTISPNVSVLK--EAVREYG 93

Query: 59  VKRLLFCGVGCQVQALRSVE------HHLNLEKLYVLGTNCVDNGTREGLDKFLKA-ASS 111
           + ++   G  CQ+QA+R  +       H+  +   ++G  C++N   EGL   ++     
Sbjct: 94  LDKVGIVGTPCQIQAVRKAQLYPVGMRHVPDKIALIVGIFCMENFPYEGLKTIVEDHCGV 153

Query: 112 EPETVLHYEFMQ-DYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADL 170
           + E V   +  +  + V+ K  D          +P  +      P C+ C DYT  LAD+
Sbjct: 154 KMEDVKKMDIGKGKFWVYTKRGDVKT-------IPLKETHKYEQPGCHVCTDYTAELADI 206

Query: 171 VVGYMGVPKYTGISMTQHPQYITVRNERGKEMLS--LVKNLLEITPT 215
             G +G P   G S       + VR ++G+E+ +  +   LLE  P 
Sbjct: 207 STGSVGSPD--GWST------VFVRTKKGEEIFNKAVEAGLLETKPI 245

Length = 282

>gnl|CDD|218081 pfam04422, FrhB_FdhB_N, Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term

 Score = 70.6 bits (174), Expect = 1e-15
 Identities = 26/52 (50%), Positives = 34/52 (65%)

Query: 1  MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLA 52
          +L++G+V+ V+ V  D DD   P PVLA TPEE+LAA G K   SP L+ L 
Sbjct: 30 LLESGLVDGVLVVGRDGDDPWKPEPVLATTPEELLAAAGSKYCPSPLLSALK 81

Coenzyme F420 hydrogenase (EC:1.12.99.1) reduces the low-potential two-electron acceptor coenzyme F420. This family contains the N termini of F420 hydrogenase and dehydrogenase beta subunits. The N terminus of Methanobacterium formicicum formate dehydrogenase beta chain (EC:1.2.1.2) is also a member of this family. This region is often found in association with the 4Fe-4S binding domain, fer4 (pfam00037). Length = 82

>gnl|CDD|132332 TIGR03289, frhB, coenzyme F420 hydrogenase, subunit beta

 Score = 66.8 bits (163), Expect = 9e-13
 Identities = 57/225 (25%), Positives = 99/225 (44%), Gaps = 27/225 (12%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTL-ALVEAAGVK 60
           L+  +++  + V    D+   P P++A TPEE+L A G K T+ PNL+ L   V   G++
Sbjct: 35  LEENIIDGAI-VAGPGDEPWKPEPLVATTPEEILKAAGTKYTVCPNLSVLKEAVREYGLE 93

Query: 61  RLLFCGVGCQVQALRS-------VEHHLNLEKLYVLGTNCVDNGTREGLDKFL-KAASSE 112
           ++   G  CQV  LR        V + ++   L  +G  C++N   E L  F+       
Sbjct: 94  KIGTVGTPCQVMGLRKAQTYPVGVRNVVDKIAL-SIGIYCMENFPYESLKTFINDKCGVT 152

Query: 113 PETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVV 172
            E V   +  +  K  +    G + +     +P  +        C+ C DY   LAD+  
Sbjct: 153 MEQVTKMDIGKG-KFWVYTTGGEVGK-----IPLKETHGYEQAGCHVCMDYVAELADIST 206

Query: 173 GYMGVPKYTGISMTQHPQYITVRNERGKEML--SLVKNLLEITPT 215
           G +G P   G S       + +R ++G+ ++  ++   +LE  P 
Sbjct: 207 GSVGSPD--GWST------VIIRTDKGESIINKAVEAGILETKPI 243

This model represents that clade of F420-dependent hydrogenases (FRH) beta subunits found exclusively and universally in methanogenic archaea. The N- and C-terminal domains of this protein are modelled by pfam04422 and pfam04423 respectively. Length = 275

>gnl|CDD|181779 PRK09326, PRK09326, F420H2 dehydrogenase subunit F; Provisional

 Score = 55.2 bits (133), Expect = 1e-08
 Identities = 53/220 (24%), Positives = 99/220 (45%), Gaps = 31/220 (14%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEA-AGV 59
           +LK G ++  V +  +  ++     VL  + E+V   +G K T    L+  AL E     
Sbjct: 104 LLKQGEIDCAVGITRN--EKWETELVLLTSAEDVERTRGTKYTYDSVLS--ALREPFEKY 159

Query: 60  KRLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTRE-GLDKFL-KAASSEPETVL 117
            R+   GV CQ    R +  ++N + + ++G  C+++   +  LDK + +    + E V+
Sbjct: 160 DRIAVIGVPCQAHGARLIRENVNDKIVLIIGLLCMESFHHDVMLDKIIPEIMGVKIEDVV 219

Query: 118 HYEFMQ-DYKVHLKHLDGHIEEVPYFCLPANDLVDVIAP----SCYSCFDYTNALADLVV 172
             +F +  +  + K  DG +  VP         +  +A      C+ C DYT+  AD+ V
Sbjct: 220 KMDFTKGKFWAYTK--DGEVHSVP---------IKDVAKYARNPCHHCCDYTSVFADISV 268

Query: 173 GYMGVPKYTGISMTQHPQYITVRNERGKEMLSLVKNLLEI 212
           G +G P             + +R + G++   +V++ LEI
Sbjct: 269 GSVGAP--------DGWNSVLIRTDIGEKYFKMVRDELEI 300

Length = 341

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	320
TIGR03289	275	frhB coenzyme F420 hydrogenase, subunit beta. This	100.0
PRK09325	282	coenzyme F420-reducing hydrogenase subunit beta; V	100.0
COG1035	332	FrhB Coenzyme F420-reducing hydrogenase, beta subu	100.0
PRK09326	341	F420H2 dehydrogenase subunit F; Provisional	100.0
PF04432	161	FrhB_FdhB_C: Coenzyme F420 hydrogenase/dehydrogena	100.0
PF04422	82	FrhB_FdhB_N: Coenzyme F420 hydrogenase/dehydrogena	99.3

>TIGR03289 frhB coenzyme F420 hydrogenase, subunit beta

Probab=100.00  E-value=1.3e-46  Score=352.26  Aligned_cols=204  Identities=25%  Similarity=0.453  Sum_probs=176.1

Q ss_pred             CCCCCeecEEEEEEecCCCCCcceeEEEcCHHHHHhhcCCCCcccccHHHHHHHHH-cCCCEEEEEecccHHHHHHHHHH
Q 020891            1 MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEA-AGVKRLLFCGVGCQVQALRSVEH   79 (320)
Q Consensus         1 lLe~g~VDgVv~~~~~~~~~~~~~~~la~t~eel~~~~GSKY~~S~~l~~l~ev~~-~~~kkvafvGtPCQI~aLr~~~~   79 (320)
                      |||+|.|||||+++ ..+++|+++|++++|+|||.+++||||+||++++.|+++.+ .++++||||||||||+|||++++
T Consensus        34 lLe~g~IDgvv~~~-~~~~~~~~~~~~~~~~eel~~~~GSkY~~s~~~~~l~~~~~~~~~~~va~vGtPCqi~alr~l~~  112 (275)
T TIGR03289        34 ALEENIIDGAIVAG-PGDEPWKPEPLVATTPEEILKAAGTKYTVCPNLSVLKEAVREYGLEKIGTVGTPCQVMGLRKAQT  112 (275)
T ss_pred             HHHcCCccEEEEEe-cCCCCCceeEEEECCHHHHHHhcCCcccCCccHHHHHHHHHhcCCCEEEEEccchHHHHHHHHHh
Confidence            58999999999865 56789999999999999999999999999999999999854 45799999999999999999986


Q ss_pred             h-----cCccc-eEEEcccCCCCCCHHHHHHHHHH-hCCCCCCeEEEEEecCcEEEEEEeCCcEEeeccccccccccccc
Q 020891           80 H-----LNLEK-LYVLGTNCVDNGTREGLDKFLKA-ASSEPETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDV  152 (320)
Q Consensus        80 ~-----l~~~~-l~~Igl~C~G~~s~~~~~~~L~~-~~~~~~~V~~~~fR~~~~~~i~~~dG~~~~~~y~~~~~~~l~~~  152 (320)
                      +     ...++ +|+|||+|||+||++.|.+||++ .++++++|.+++||. +.+++.+.||++..+|+..     .+.+
T Consensus       113 ~~~~~~~~~d~i~~~Igl~C~g~~s~~~~~~~l~~~~g~~~~~v~~~~~r~-g~~~v~~~dg~~~~~~~~~-----~~~~  186 (275)
T TIGR03289       113 YPVGVRNVVDKIALSIGIYCMENFPYESLKTFINDKCGVTMEQVTKMDIGK-GKFWVYTTGGEVGKIPLKE-----THGY  186 (275)
T ss_pred             ccccccccccceEEEEeeeCCCCCCHHHHHHHHHHhcCCCHHHccEEEeEC-CcEEEEECCCcEEEEEhHH-----hhhh
Confidence            3     12356 69999999999999999999976 688899999999995 4566778999887765433     3457


Q ss_pred             ccCCCccCcCCCCCCCceeeeecCCCCCCCCCCCCCcEEEEEeChHHHHHHHHhh--ccceeccCCCCC
Q 020891          153 IAPSCYSCFDYTNALADLVVGYMGVPKYTGISMTQHPQYITVRNERGKEMLSLVK--NLLEITPTISSG  219 (320)
Q Consensus       153 ~r~sC~~C~d~~~~~ADItiG~~g~p~~~g~~~~~G~s~VlvrT~kG~~ll~~~~--~~le~~~~~~~~  219 (320)
                      .|++|+.|+|+++++||||+|++|.|+        |+|+|||||++|++||+.+.  +.++..++++.-
T Consensus       187 ~r~~C~~C~D~~~~~ADIsvGd~~~~~--------G~s~VivrT~kG~~ll~~a~~~g~ie~~~~~~~~  247 (275)
T TIGR03289       187 EQAGCHVCMDYVAELADISTGSVGSPD--------GWSTVIIRTDKGESIINKAVEAGILETKPIEEVK  247 (275)
T ss_pred             cCCCCccCCCCCCcccceeeeccCCCC--------CceEEEEECHHHHHHHHHHHHcCceeeccccccc
Confidence            899999999999999999999887663        57899999999999999996  568888877433

This model represents that clade of F420-dependent hydrogenases (FRH) beta subunits found exclusively and universally in methanogenic archaea. The N- and C-terminal domains of this protein are modelled by pfam04422 and pfam04423 respectively.

>PRK09325 coenzyme F420-reducing hydrogenase subunit beta; Validated

Probab=100.00  E-value=5.8e-45  Score=342.52  Aligned_cols=202  Identities=29%  Similarity=0.519  Sum_probs=173.8

Q ss_pred             CCCCCeecEEEEEEecCCCCCcceeEEEcCHHHHHhhcCCCCcccccHHHHHHHHH-cCCCEEEEEecccHHHHHHHHHH
Q 020891            1 MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEA-AGVKRLLFCGVGCQVQALRSVEH   79 (320)
Q Consensus         1 lLe~g~VDgVv~~~~~~~~~~~~~~~la~t~eel~~~~GSKY~~S~~l~~l~ev~~-~~~kkvafvGtPCQI~aLr~~~~   79 (320)
                      ||++|.|||||+++ ..+++|+++|++++|+|||.+++||||+||++++.++++.+ .+.++||||||||||+|||++++
T Consensus        36 lLe~g~VDgvv~~~-~~~~~~~~~~~~a~~~eel~~~~GSkY~~s~~~~~~~~~l~~~~~~kva~VGtPCqI~alr~l~~  114 (282)
T PRK09325         36 ALEEGIIDGVIVAG-DGEEPWKPVPKVATTPEEILEAAGTKYTISPNVSVLKEAVREYGLDKVGIVGTPCQIQAVRKAQL  114 (282)
T ss_pred             HHHcCCccEEEEec-CCCCCCCceeEEECCHHHHHHhcCCcccCCchHHHHHHHHHhcCCCeEEEEccChHHHHHHHHHh
Confidence            58999999999974 56788999999999999999999999999999999999764 45699999999999999999985


Q ss_pred             h-cC----ccce-EEEcccCCCCCCHHHHHHHHHH-hCCCCCCeEEEEEecCcEEEEEEeCCcEEeeccccccccccccc
Q 020891           80 H-LN----LEKL-YVLGTNCVDNGTREGLDKFLKA-ASSEPETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDV  152 (320)
Q Consensus        80 ~-l~----~~~l-~~Igl~C~G~~s~~~~~~~L~~-~~~~~~~V~~~~fR~~~~~~i~~~dG~~~~~~y~~~~~~~l~~~  152 (320)
                      + .+    .+++ |+|||+|||+||++.|++||+. ++.++++|.+++||+ +..++.+.||+...+|     +++++.+
T Consensus       115 ~~~~~~~~~d~l~~~Igl~C~g~~~~~~~~~~l~~~~g~~~~~v~~~~~r~-g~~~v~~~~g~~~~~~-----~~~~~~~  188 (282)
T PRK09325        115 YPVGMRHVPDKIALIVGIFCMENFPYEGLKTIVEDHCGVKMEDVKKMDIGK-GKFWVYTKRGDVKTIP-----LKETHKY  188 (282)
T ss_pred             ccccccccccceeEEEcccCCCCCCHHHHHHHHHHHhCCCHHHeeEEEEeC-CeEEEEEcCCcEEEeE-----HHHhhhh
Confidence            3 11    2566 9999999999999999999999 788889999999996 3445667889887654     3444567


Q ss_pred             ccCCCccCcCCCCCCCceeeeecCCCCCCCCCCCCCcEEEEEeChHHHHHHHHhh--ccceeccCCC
Q 020891          153 IAPSCYSCFDYTNALADLVVGYMGVPKYTGISMTQHPQYITVRNERGKEMLSLVK--NLLEITPTIS  217 (320)
Q Consensus       153 ~r~sC~~C~d~~~~~ADItiG~~g~p~~~g~~~~~G~s~VlvrT~kG~~ll~~~~--~~le~~~~~~  217 (320)
                      .|++|+.|+|+++++||||+|++|.|.        |+|+|+|||++|++||+.+.  +.++..+++.
T Consensus       189 ~r~~C~~C~d~~~~~ADIsvGd~~~~~--------G~s~vivrt~kG~~ll~~a~~~g~i~~~~~~~  247 (282)
T PRK09325        189 EQPGCHVCTDYTAELADISTGSVGSPD--------GWSTVFVRTKKGEEIFNKAVEAGLLETKPIEE  247 (282)
T ss_pred             cCCCCcCCcCCCCCcccEeeeccCCCC--------CceEEEEEChHHHHHHHHHHHcCceEeccCcc
Confidence            899999999999999999999876553        57899999999999999996  5678888764

>COG1035 FrhB Coenzyme F420-reducing hydrogenase, beta subunit [Energy production and conversion]

Probab=100.00  E-value=2.8e-42  Score=327.07  Aligned_cols=201  Identities=35%  Similarity=0.593  Sum_probs=178.5

Q ss_pred             CCCCCeecEEEEEEecCCCCCcceeEEEcCHHHHHhhcCCCCcccccHHHHHHHH-HcCCCEEEEEecccHHHHHHHHHH
Q 020891            1 MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVE-AAGVKRLLFCGVGCQVQALRSVEH   79 (320)
Q Consensus         1 lLe~g~VDgVv~~~~~~~~~~~~~~~la~t~eel~~~~GSKY~~S~~l~~l~ev~-~~~~kkvafvGtPCQI~aLr~~~~   79 (320)
                      |||+|+|||||+++ +++++|+|+|++++|++||.+++||||+.||+++.|+++. +.+.+||||||+||||+|+|++++
T Consensus        84 aLe~gliDgvv~v~-~~~~~~kp~p~va~t~eel~~tagsky~~~~~l~~L~ea~~~~g~~rvavvG~PC~i~avrk~~~  162 (332)
T COG1035          84 ALEEGLIDGVVVVG-SGEEEWKPIPVVATTPEELLETAGSKYTISPNLSALKEAVRKYGLERVAVVGTPCQIQAVRKLQK  162 (332)
T ss_pred             HHHcCCceEEEEeC-CCccccCCeeEEecChHHHHHhcCCcccCchhHHHHHHHHhhcCCceEEEeecchHHHHHHHHhh
Confidence            68999999999988 7789999999999999999999999999999999999987 444579999999999999999987


Q ss_pred             hcC-c-----cceEEEcccCCCCCCHHHHHHHHHH-hCCCCCCeEEEEEecCcEEEEEEeCCcEEeeccccccccccccc
Q 020891           80 HLN-L-----EKLYVLGTNCVDNGTREGLDKFLKA-ASSEPETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDV  152 (320)
Q Consensus        80 ~l~-~-----~~l~~Igl~C~G~~s~~~~~~~L~~-~~~~~~~V~~~~fR~~~~~~i~~~dG~~~~~~y~~~~~~~l~~~  152 (320)
                      +.. .     ++.|+||+||.+++++..++++|+. .++++.+|.+++++ +|++++++.||++..+     ++++++.+
T Consensus       163 ~~~~~~~~~~~i~~~iGlfC~e~f~y~~l~~~l~e~~gvd~~dV~k~di~-kGk~~v~~~dG~~~~~-----~l~e~e~~  236 (332)
T COG1035         163 FDLGLKHRREKIVYVIGLFCMENFSYEGLKKFLEEDLGVDPEDVEKMDIR-KGKFVVELKDGEVKEI-----PLKETEEY  236 (332)
T ss_pred             ccccccccccceEEEEeeecCCCcCHHHHHHHHHHHhCCCHHHeEEEEee-CceEEEEecCCcEEEE-----Ehhhhhcc
Confidence            632 2     2689999999999999999999998 59999999999998 7888889999977644     56777778


Q ss_pred             ccCCCccCcCCCCCCCceeeeecCCCCCCCCCCCCCcEEEEEeChHHHHHHHHhh--ccceeccCC
Q 020891          153 IAPSCYSCFDYTNALADLVVGYMGVPKYTGISMTQHPQYITVRNERGKEMLSLVK--NLLEITPTI  216 (320)
Q Consensus       153 ~r~sC~~C~d~~~~~ADItiG~~g~p~~~g~~~~~G~s~VlvrT~kG~~ll~~~~--~~le~~~~~  216 (320)
                      .+++|+.|.|+++++||||+|+||+|+  |      ||+|+|||++|+++|+.+.  +.|+.+++.
T Consensus       237 ~~~gC~~C~D~~a~~ADiSvGsvGsP~--G------w~tVlVRt~~g~~i~~~av~~g~le~k~~~  294 (332)
T COG1035         237 GPEGCRVCTDFVAELADISVGSVGSPD--G------WSTVLVRTEKGEEILDGAVEAGLLEVKEIE  294 (332)
T ss_pred             cCCCCeehhhccccccccccccccCCC--c------eeEEEEecchHHHHHHHHHhccceeeeccc
Confidence            889999999999999999999999996  4      5799999999999999997  456555443

>PRK09326 F420H2 dehydrogenase subunit F; Provisional

Probab=100.00  E-value=2.8e-41  Score=325.38  Aligned_cols=199  Identities=25%  Similarity=0.458  Sum_probs=169.4

Q ss_pred             CCCCCeecEEEEEEecCCCCCcceeEEEcCHHHHHhhcCCCCcccccHHHHHHHHHcCCCEEEEEecccHHHHHHHHHHh
Q 020891            1 MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKRLLFCGVGCQVQALRSVEHH   80 (320)
Q Consensus         1 lLe~g~VDgVv~~~~~~~~~~~~~~~la~t~eel~~~~GSKY~~S~~l~~l~ev~~~~~kkvafvGtPCQI~aLr~~~~~   80 (320)
                      ||++|.||+|++++.  ++.|++.|++++|+|||.+++||||++|++++.|+++.+ .+++||||||||||+|||+++..
T Consensus       104 ~L~~g~Vd~V~~~~~--~~~~~~~~~~~~~~eel~~~~gSkY~~s~~~~~l~~~~~-~~~kVa~vG~PCqi~alr~~~~~  180 (341)
T PRK09326        104 LLKQGEIDCAVGITR--NEKWETELVLLTSAEDVERTRGTKYTYDSVLSALREPFE-KYDRIAVIGVPCQAHGARLIREN  180 (341)
T ss_pred             HHHcCCccEEEEecc--CCCccceeEEECCHHHHHHhcCCcccCcchHHHHHHHHh-cCCeEEEEcCchhHHHHHHHHhh
Confidence            589999999998754  567999999999999999999999999999999999875 48999999999999999999876


Q ss_pred             cCccceEEEcccCCCCCCHHHH-HHHHHH-hCCCCCCeEEEEEecCcEEEEEEeCCcEEeecccccccccccccccCCCc
Q 020891           81 LNLEKLYVLGTNCVDNGTREGL-DKFLKA-ASSEPETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCY  158 (320)
Q Consensus        81 l~~~~l~~Igl~C~G~~s~~~~-~~~L~~-~~~~~~~V~~~~fR~~~~~~i~~~dG~~~~~~y~~~~~~~l~~~~r~sC~  158 (320)
                      +..+++|+|||+|.|++.+... .+|++. .++++++|.+++||++ .+++.+.||+...+|+     +.++.++|++|+
T Consensus       181 ~~~~~l~~Igl~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~r~~-~~~~~~~~g~~~~~~~-----~~~~~~~r~~C~  254 (341)
T PRK09326        181 VNDKIVLIIGLLCMESFHHDVMLDKIIPEIMGVKIEDVVKMDFTKG-KFWAYTKDGEVHSVPI-----KDVAKYARNPCH  254 (341)
T ss_pred             cccceEEEEccccCCCCChhHHHHHHHHHhcCCCHHHeeEEEEECC-EEEEEEcCCcEEEeEH-----HHhhHhhcCCCc
Confidence            5667999999999887777554 467755 5777889999999964 5667778998766544     334557999999


Q ss_pred             cCcCCCCCCCceeeeecCCCCCCCCCCCCCcEEEEEeChHHHHHHHHhhccceeccCC
Q 020891          159 SCFDYTNALADLVVGYMGVPKYTGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTI  216 (320)
Q Consensus       159 ~C~d~~~~~ADItiG~~g~p~~~g~~~~~G~s~VlvrT~kG~~ll~~~~~~le~~~~~  216 (320)
                      .|+|+++++||||+|++|.|        .|+|+|||||+||++||+.+++.+++.+.+
T Consensus       255 ~C~D~~~~~aDIsiGd~g~~--------~G~s~vivrt~kG~~l~~~a~~~~~~~~~~  304 (341)
T PRK09326        255 HCCDYTSVFADISVGSVGAP--------DGWNSVLIRTDIGEKYFKMVRDELEIMEDP  304 (341)
T ss_pred             cccccCCcccceeeeccCCC--------CceEEEEEeChHHHHHHHHHHHhccccccC
Confidence            99999999999999988755        357899999999999999999887776655

>PF04432 FrhB_FdhB_C: Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus; InterPro: IPR007525 Coenzyme F420 hydrogenase (1

Probab=100.00  E-value=1.2e-35  Score=257.65  Aligned_cols=149  Identities=31%  Similarity=0.539  Sum_probs=128.3

Q ss_pred             cCCCEEEEEecccHHHHHHHHHHhcC---ccceEEEcccCCCCCCHHHHHHHHHH-hCCCCCCeEEEEEecCcEEEEEEe
Q 020891           57 AGVKRLLFCGVGCQVQALRSVEHHLN---LEKLYVLGTNCVDNGTREGLDKFLKA-ASSEPETVLHYEFMQDYKVHLKHL  132 (320)
Q Consensus        57 ~~~kkvafvGtPCQI~aLr~~~~~l~---~~~l~~Igl~C~G~~s~~~~~~~L~~-~~~~~~~V~~~~fR~~~~~~i~~~  132 (320)
                      +++++||||||||||+|||+++++..   .+++|+|||+|||+||++.|++||+. ++.++++|.+++||+ ||+.+++.
T Consensus         2 ~~~~kV~~vG~PCqi~al~~~~~~~~~~~~~~~~~igl~C~g~~s~~~~~~~l~~~~~~~~~~v~~~~~r~-g~~~i~~~   80 (161)
T PF04432_consen    2 QGGKKVAFVGTPCQIAALRKLLKRNYENRDEIVYTIGLFCHGVPSPKKLRKYLEEQLGIKPDDVKKFDFRD-GWFIITTK   80 (161)
T ss_pred             CCCCEEEEEeccHHHHHHHHHHhhCcccCcceEEEEeEECCCCCCHHHHHHHHHHHhCCChhheeEEEEeC-CeEEEEEe
Confidence            36899999999999999999987521   24789999999999999999999998 689989999999997 78888888


Q ss_pred             CCcEEeecccccccccccccccCCCccCcCCCCCCCceeeeecCCCCCCCCCCCCCcEEEEEeChHHHHHHHHhh--ccc
Q 020891          133 DGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKYTGISMTQHPQYITVRNERGKEMLSLVK--NLL  210 (320)
Q Consensus       133 dG~~~~~~y~~~~~~~l~~~~r~sC~~C~d~~~~~ADItiG~~g~p~~~g~~~~~G~s~VlvrT~kG~~ll~~~~--~~l  210 (320)
                      ||+...+|+     +.++.+.|++|+.|.|++++.||||+|+||.+        +|+|+|+|||+||++||+.++  +.+
T Consensus        81 ~g~~~~~~~-----~~~~~~~r~~C~~C~d~~~~~aDIsiGd~~~~--------~G~S~vivrt~kG~~l~~~~~~~~~l  147 (161)
T PF04432_consen   81 DGKEKEIPL-----KELGFFLRPSCYICPDFTPERADISIGDWGDP--------KGWSLVIVRTEKGEELLEEAKENGYL  147 (161)
T ss_pred             CCCEEEEeh-----HHhCCccCCccccCCCCCCCcCCEEEEeCCCC--------CceEEEEEECHHHHHHHHHHHHCCcE
Confidence            988776654     33366899999999999999999999997655        467899999999999999998  468


Q ss_pred             eeccCCCCC
Q 020891          211 EITPTISSG  219 (320)
Q Consensus       211 e~~~~~~~~  219 (320)
                      ++.|++..+
T Consensus       148 e~~~~~~~~  156 (161)
T PF04432_consen  148 ELKPIEPEK  156 (161)
T ss_pred             EecCCChhh
Confidence            999888443

12.99.1 from EC) reduces the low-potential two-electron acceptor coenzyme F420. This family contains the C-termini of F420 hydrogenase and dehydrogenase beta subunits [, ]. The C terminus of Methanobacterium formicicum formate dehydrogenase beta chain (1.2.1.2 from EC, P06130 from SWISSPROT) is also represented in this entry []. This region is often found in association with the 4Fe-4S binding domain, fer4 (IPR001450 from INTERPRO), and the N terminus IPR007516 from INTERPRO.

>PF04422 FrhB_FdhB_N: Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term; InterPro: IPR007516 Coenzyme F420 hydrogenase (1

Probab=99.30  E-value=1.7e-12  Score=100.57  Aligned_cols=53  Identities=45%  Similarity=0.708  Sum_probs=50.1

Q ss_pred             CCCCCeecEEEEEEecCCCCCcceeEEEcCHHHHHhhcCCCCcccccHHHHHH
Q 020891            1 MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLAL   53 (320)
Q Consensus         1 lLe~g~VDgVv~~~~~~~~~~~~~~~la~t~eel~~~~GSKY~~S~~l~~l~e   53 (320)
                      |||+|+||+||+++.+++++|+++|++++|+|||.+++||||+++|++..|+|
T Consensus        30 lLe~g~Vd~vv~~~~~~~~~~~~~~~i~~~~eel~~~aGSkY~~~~~~~~Lke   82 (82)
T PF04422_consen   30 LLESGLVDGVVVVGRDDDDPWRPEPVIATSPEELLKAAGSKYSPSPVLSALKE   82 (82)
T ss_pred             HHHcCCceEEEEEeecCCCCcceEEEEECCHHHHHHHcCCceeccchHHHhcC
Confidence            68999999999999888889999999999999999999999999999998875

12.99.1 from EC) reduces the low-potential two-electron acceptor coenzyme F420. This entry contains the N termini of F420 hydrogenase and dehydrogenase beta subunits [, ]. The N terminus of Methanobacterium formicicum formate dehydrogenase beta chain (1.2.1.2 from EC, P06130 from SWISSPROT) is also represented in this entry []. This region is often found in association with the 4Fe-4S binding domain, fer4 (IPR001450 from INTERPRO), and the C terminus IPR007525 from INTERPRO.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	320
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.4 bits (109), Expect = 1e-05
 Identities = 55/367 (14%), Positives = 110/367 (29%), Gaps = 102/367 (27%)

Query: 13  VQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKRLLFCGVGCQV- 71
           + +D     +   V +R  +  L  +     L P  N + +    GV      G G    
Sbjct: 119 LYNDNQ-VFAKYNV-SR-LQPYLKLRQALLELRPAKN-VLID---GVL-----GSGKTWV 166

Query: 72  --QALRS--VEHHLNLEKLYV-LGTNCVDNGTREGLDKFL----KAASSEPETVLHYEF- 121
                 S  V+  ++ +  ++ L          E L K L       +S  +   + +  
Sbjct: 167 ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR 226

Query: 122 MQDYKVHLKHLDGHIEEVPYF-CLPANDLV--DVIAPSCYSCFDY-------TN--ALAD 169
           +   +  L+ L   ++  PY  CL    LV  +V     ++ F+        T    + D
Sbjct: 227 IHSIQAELRRL---LKSKPYENCL----LVLLNVQNAKAWNAFNLSCKILLTTRFKQVTD 279

Query: 170 LVVGYMGVP--------------------KYTGISMTQ--------HPQYITVRNERGKE 201
            +                           KY               +P+ +++  E  ++
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRD 339

Query: 202 MLSLVKNLL-----EITPTISSG--------DRRPFVMETVKADDNAKMGRGPSQPAPKF 248
            L+   N       ++T  I S          R+ F   +V    +A +   P+      
Sbjct: 340 GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV-FPPSAHI---PTILLSLI 395

Query: 249 VGNLIAFFINLVGPKGLEFARYSL---DYHTIRNYLH----VNRAWGKKRADKHMPSYAK 301
             ++I   + +V     +  +YSL           +       +   +     H     +
Sbjct: 396 WFDVIKSDVMVVVN---KLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH-----R 447

Query: 302 KIVEMYN 308
            IV+ YN
Sbjct: 448 SIVDHYN 454

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00