Citrus Sinensis ID: 020972

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------32
Protein Sequence
MKRYRNGEIWDFETAEESGGREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTMGKLHGCVLIAGTGTIAYGFTEDGRDARAAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWARIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEGVTYTKILKEKVPLLMENILFLLSWLVVFLKLIEGGI
Secondary Structure (PSIPRED)
cccccccccccccccccccccEEEEEEEccccccEEEEEEcccccccccccccEEEEEEccccccccccHHHHHHHHHHHHHHHHHHcccccccccEEEEEccccccHHHHHHHHHHHHHHcccccEEEEEccHHHHHHccccccccEEEEEEcccEEEEEEcccccEEEEccccccccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHcccccHHHHHHHHcccccHHHHHcccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEcccccHHHHHHHHHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccEEEEEEcccccccEEEEEEEcccccEEEEEEccccccccccccccEEEEEEccccccccccHHHHHHHHHHHHHHHHHHccccHHHHHEEEEEccccccHHHHHHHHHHHHHHccccccEEEccHHHHHHHHHcccccccEEEEEccccEEEEEcccccEEEEcccccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHcccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEcccccEEEEccEEcccHHHHHHHHccccc
Coil and Loop (DISEMBL)
mkryrngeiwdfetaeesggrevilgldggttstvcicmpvismsdslpdplpVLARAAagcsnhnsvgedAARETIEKVMADALlksgsnrsAVRAVCLAvsgvnhptdQQRILNWLrdifpgnvrlYVHNDALAAlasgtmgklHGCVLIAGtgtiaygftedgrdaraagagpilgdwgsgyGIAAQALTAVIRAydgrgpdtmlTSNILstlelsspdeligwtyvdpswarIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSlsgegvtyTKILKEKVPLLMENILFLLSWLVVFLKLIEGGI
Flexible Loop (DISEMBL)
mkryrngeiwdfetaeesggreVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADAllksgsnrSAVRAVCLAVsgvnhptdQQRILNWLRDIFPGNVRLYVHNDALAALASGTMGKLHGCVLIAGTGTIAYGFTEDGRDARAAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWARIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQrlslsgegvtytKILKEKVPLLMENILFLLSWLVVFLKLIEGGI
Low Complexity Region (SEG)
MKRYRNGEIWDFETAEESGGREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTMGKLHGCVLIAGTGTIAYGFTEdgrdaraagagPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWARIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEGVTYTKILKEKVPLLMENILFLLSWLVVFLKLIEGGI
Disordered region (IsUnstruct)
********IWDFETAEESGGREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAA********************MADALL*****RSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTMGKLHGCVLIAGTGTIAYGFTEDGRDARAAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWARIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEGVTYTKILKEKVPLLMENILFLLSWLVVFLKLIE***
Disordered Region (DISOPRED)
******G**************EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTMGKLHGCVLIAGTGTIAYGFTEDGRDARAAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWARIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEGVTYTKILKEKVPLLMENILFLLSWLVVFLKLIEGGI
Disordered Region (DISEMBL)
MKRYRNGEIWDFETAEESGGREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTMGKLHGCVLIAGTGTIAYGFTEDGRDARAAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWARIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEGVTYTKILKEKVPLLMENILFLLSWLVVFLKLIEGGI
Disordered Region (DISPRO)
***YRNGEIWDFETAEESGGREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTMGKLHGCVLIAGTGTIAYGFTEDGRDARAAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWARIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEGVTYTKILKEKVPLLMENILFLLSWLVVFLKLIEGG*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKRYRNGEIWDFETAEESGGREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTMGKLHGCVLIAGTGTIAYGFTEDGRDARAAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWARIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEGVTYTKILKEKVPLLMENILFLLSWLVVFLKLIEGGI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	319	2.2.26 [Sep-21-2011]
Q54PM7	319	N-acetyl-D-glucosamine ki	yes	no	0.808	0.808	0.355	8e-45
Q3SZM9	344	N-acetyl-D-glucosamine ki	yes	no	0.733	0.680	0.285	5e-11
Q9UJ70	344	N-acetyl-D-glucosamine ki	yes	no	0.695	0.645	0.278	9e-11
P81799	343	N-acetyl-D-glucosamine ki	yes	no	0.733	0.682	0.265	8e-10
Q9QZ08	343	N-acetyl-D-glucosamine ki	yes	no	0.742	0.690	0.266	8e-10

>sp|Q54PM7|NAGK_DICDI N-acetyl-D-glucosamine kinase OS=Dictyostelium discoideum GN=nagk PE=3 SV=2

 Score =  181 bits (458), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 102/287 (35%), Positives = 157/287 (54%), Gaps = 29/287 (10%)

Query: 21  REVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIE-- 78
           +E+ +G+DGG T T  + +               LAR  + CSN++SVGED A+  I   
Sbjct: 3   KEIFIGIDGGGTKTSTVAVDSNGQE---------LARHTSPCSNYHSVGEDLAKAAINEG 53

Query: 79  -----KVMADALLKSGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHND 133
                + + + +    +    V ++CL +SGV+   D+  + +W+ ++   ++   +HND
Sbjct: 54  IKYVIRKVKETITDDDNKEVTVGSICLGMSGVDREKDKLLVKSWVTELLGESINYSIHND 113

Query: 134 ALAALASGTMGKLHGCVLIAGTGTIAYGFTEDGRDARAAGAGPILGDWGSGYGIAAQALT 193
           A+ AL+SGT GKL G V+I GTG I+ GF  +G   R+ G GP+LGD+GSGY I    L 
Sbjct: 114 AIVALSSGTQGKLFGVVIICGTGCISLGFNREGVSGRSGGWGPLLGDYGSGYQIGYDILR 173

Query: 194 AVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDP---SWARIAALVPVVVSCAEA 250
            V++A D  GP T LT  +L  L+L+  ++LI W Y DP   SW + A L P+    A+ 
Sbjct: 174 HVLKAKDQVGPKTSLTQVLLEKLQLTKEEDLISWAY-DPKTQSWQKFAQLSPLAFEQAQL 232

Query: 251 GDEVANKILQDSVEELALSVKAVVQRLSLSGEGVTYTKILKEKVPLL 297
           GDE++N IL D+   L   + +V+++L L  E         EK PL+
Sbjct: 233 GDEISNLILVDAANALYDLINSVIKKLGLDKE---------EKFPLV 270

Converts N-acetylglucosamine (GlcNAc), a major component of complex carbohydrates, into GlcNAc 6-phosphate. Also has ManNAc kinase activity.
Dictyostelium discoideum (taxid: 44689)
EC: 2EC: .EC: 7EC: .EC: 1EC: .EC: 5EC: 9

>sp|Q3SZM9|NAGK_BOVIN N-acetyl-D-glucosamine kinase OS=Bos taurus GN=NAGK PE=2 SV=1

 Score = 68.9 bits (167), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 72/252 (28%), Positives = 111/252 (44%), Gaps = 18/252 (7%)

Query: 29  GGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKS 88
           GGT S V +          L +   +LA A    +NH  +G D   E I +++  A  K+
Sbjct: 11  GGTRSKVLL----------LSEDGQILAEADGLSTNHWLIGTDKCVERINEMVNRAKRKA 60

Query: 89  GSNR-SAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLY-VHNDALAALASGTMGKL 146
           G +    +R + L++SG +     + ++  LRD FP     Y +  DA  ++A+ T    
Sbjct: 61  GVDPLVPLRGLGLSLSGGDQEDAVRMLMEELRDRFPYLSESYLITTDAAGSIATATPDG- 119

Query: 147 HGCVLIAGTGTIAYGFTEDGRDARAAGAGPILGDWGSGYGIAAQALTAVIRAYDG--RGP 204
            G VLI+GTG+       DG ++   G G ++GD GS Y IA QA+  V  + D     P
Sbjct: 120 -GVVLISGTGSNCRLINPDGSESGCGGWGHMMGDEGSAYWIAHQAVKIVFDSIDNLEAAP 178

Query: 205 DTMLTSNILSTLELSSPDEL--IGWTYVDPSWARIAALVPVVVSCAEAGDEVANKILQDS 262
             +             PD L  +   Y D   +R A     V   A+ GD ++  I + +
Sbjct: 179 HDIGYVKQAMFNYFQVPDRLGILTHLYRDFDKSRFAGFCRKVAEGAQQGDPLSRCIFRKA 238

Query: 263 VEELALSVKAVV 274
            E L   V AV+
Sbjct: 239 GEMLGRHVVAVL 250

Converts endogenous N-acetylglucosamine (GlcNAc), a major component of complex carbohydrates, from lysosomal degradation or nutritional sources into GlcNAc 6-phosphate. Also has ManNAc kinase activity.

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 5

EC: 9

>sp|Q9UJ70|NAGK_HUMAN N-acetyl-D-glucosamine kinase OS=Homo sapiens GN=NAGK PE=1 SV=4

 Score = 68.2 bits (165), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 64/230 (27%), Positives = 104/230 (45%), Gaps = 8/230 (3%)

Query: 54  VLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNR-SAVRAVCLAVSGVNHPTDQQ 112
           +LA A    +NH  +G D   E I +++  A  K+G +    +R++ L++SG +     +
Sbjct: 26  ILAEADGLSTNHWLIGTDKCVERINEMVNRAKRKAGVDPLVPLRSLGLSLSGGDQEDAGR 85

Query: 113 RILNWLRDIFPGNVRLY-VHNDALAALASGTMGKLHGCVLIAGTGTIAYGFTEDGRDARA 171
            ++  LRD FP     Y +  DA  ++A+ T     G VLI+GTG+       DG ++  
Sbjct: 86  ILIEELRDRFPYLSESYLITTDAAGSIATATPDG--GVVLISGTGSNCRLINPDGSESGC 143

Query: 172 AGAGPILGDWGSGYGIAAQALTAVIRAYDG--RGPDTMLTSNILSTLELSSPDEL--IGW 227
            G G ++GD GS Y IA QA+  V  + D     P  +             PD L  +  
Sbjct: 144 GGWGHMMGDEGSAYWIAHQAVKIVFDSIDNLEAAPHDIGYVKQAMFHYFQVPDRLGILTH 203

Query: 228 TYVDPSWARIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRL 277
            Y D    R A     +   A+ GD ++  I + + E L   + AV+  +
Sbjct: 204 LYRDFDKCRFAGFCRKIAEGAQQGDPLSRYIFRKAGEMLGRHIVAVLPEI 253

Converts endogenous N-acetylglucosamine (GlcNAc), a major component of complex carbohydrates, from lysosomal degradation or nutritional sources into GlcNAc 6-phosphate. Also has ManNAc kinase activity.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 5

EC: 9

>sp|P81799|NAGK_RAT N-acetyl-D-glucosamine kinase OS=Rattus norvegicus GN=Nagk PE=1 SV=4

 Score = 65.1 bits (157), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 67/252 (26%), Positives = 112/252 (44%), Gaps = 18/252 (7%)

Query: 29  GGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKS 88
           GGT S V +          L +   +LA A    +NH  +G     E I +++  A  K+
Sbjct: 11  GGTRSKVLL----------LSEDGQILAEADGLSTNHWLIGTGTCVERINEMVDRAKRKA 60

Query: 89  GSNR-SAVRAVCLAVSGVNHPTDQQRILNWLRDIFPG-NVRLYVHNDALAALASGTMGKL 146
           G +    +R++ L++SG       + ++  LRD FP  +   ++  DA  ++A+ T    
Sbjct: 61  GVDPLVPLRSLGLSLSGGEQEDAVRLLMEELRDRFPYLSESYFITTDAAGSIATATPDG- 119

Query: 147 HGCVLIAGTGTIAYGFTEDGRDARAAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDT 206
            G VLI+GTG+       DG ++   G G ++GD GS Y IA QA+  V  + D      
Sbjct: 120 -GIVLISGTGSNCRLINPDGSESGCGGWGHMMGDEGSAYWIAHQAVKIVFDSIDNLEAAP 178

Query: 207 MLTSNILSTL--ELSSPDEL--IGWTYVDPSWARIAALVPVVVSCAEAGDEVANKILQDS 262
               ++   +      PD L  +   Y D   ++ A     +   A+ GD ++  I + +
Sbjct: 179 HDIGHVKQAMFNYFQVPDRLGILTHLYRDFDKSKFAGFCQKIAEGAQQGDPLSRFIFRKA 238

Query: 263 VEELALSVKAVV 274
            E L   V AV+
Sbjct: 239 GEMLGRHVVAVL 250

Converts endogenous N-acetylglucosamine (GlcNAc), a major component of complex carbohydrates, from lysosomal degradation or nutritional sources into GlcNAc 6-phosphate. Also has ManNAc kinase activity. May also play a role in sialic acid biosynthesis.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 5

EC: 9

>sp|Q9QZ08|NAGK_MOUSE N-acetyl-D-glucosamine kinase OS=Mus musculus GN=Nagk PE=2 SV=3

 Score = 64.7 bits (156), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 68/255 (26%), Positives = 110/255 (43%), Gaps = 18/255 (7%)

Query: 29  GGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKS 88
           GGT S V +          L +   +LA A    +NH  +G D   E I +++  A  K+
Sbjct: 11  GGTRSKVLL----------LSEDGQILAEADGLSTNHWLIGTDQCVERINEMVDRAKQKA 60

Query: 89  GSNR-SAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLY-VHNDALAALASGTMGKL 146
           G +    +R++ L++SG       + ++  LR  FP     Y +  DA  ++A+ T    
Sbjct: 61  GVDPLVPLRSLGLSLSGGEQEDAVRLLIEELRHRFPNLSENYLITTDAAGSIATATPDG- 119

Query: 147 HGCVLIAGTGTIAYGFTEDGRDARAAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDT 206
            G VLI+GTG+       DG ++   G G ++GD GS Y IA QA+  V  + D      
Sbjct: 120 -GIVLISGTGSNCRLINPDGSESGCGGWGHMMGDEGSAYWIAHQAVKIVFDSIDNLEAAP 178

Query: 207 MLTSNILSTL--ELSSPDEL--IGWTYVDPSWARIAALVPVVVSCAEAGDEVANKILQDS 262
               ++   +      PD L  +   Y D    + A     +   A  GD ++  I + +
Sbjct: 179 HDIGHVKQAMFDYFQVPDRLGILTHLYRDFDKCKFAGFCQKIAEGAHQGDPLSRYIFRKA 238

Query: 263 VEELALSVKAVVQRL 277
            E L   V AV+  +
Sbjct: 239 GEMLGRHVVAVLPEI 253

Converts endogenous N-acetylglucosamine (GlcNAc), a major component of complex carbohydrates, from lysosomal degradation or nutritional sources into GlcNAc 6-phosphate. Also has ManNAc kinase activity.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 5

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	319
255561146	328	N-acetylglucosamine kinase, putative [Ri	0.884	0.859	0.865	1e-136
224131396	354	predicted protein [Populus trichocarpa]	0.880	0.793	0.843	1e-135
359485331	350	PREDICTED: N-acetyl-D-glucosamine kinase	0.884	0.805	0.831	1e-131
356501411	370	PREDICTED: N-acetyl-D-glucosamine kinase	0.915	0.789	0.774	1e-127
255648369	370	unknown [Glycine max]	0.915	0.789	0.767	1e-125
357494031	367	N-acetyl-D-glucosamine kinase [Medicago	0.884	0.768	0.796	1e-123
357494027	355	N-acetyl-D-glucosamine kinase [Medicago	0.884	0.794	0.796	1e-123
449463605	350	PREDICTED: LOW QUALITY PROTEIN: N-acetyl	0.902	0.822	0.758	1e-121
356554098	369	PREDICTED: LOW QUALITY PROTEIN: N-acetyl	0.915	0.791	0.753	1e-121
449460020	355	PREDICTED: N-acetyl-D-glucosamine kinase	0.877	0.788	0.749	1e-117

>gi|255561146|ref|XP_002521585.1| N-acetylglucosamine kinase, putative [Ricinus communis] gi|223539263|gb|EEF40856.1| N-acetylglucosamine kinase, putative [Ricinus communis]

 Score =  492 bits (1266), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 245/283 (86%), Positives = 258/283 (91%), Gaps = 1/283 (0%)

Query: 1   MKRYRNGEIWDFETA-EESGGREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAA 59
           MKRYRNGEIWDFE     SG   VILGLDGGTTSTVCICMP++  S  LPDPLPVLARA 
Sbjct: 1   MKRYRNGEIWDFEHEIPVSGNNPVILGLDGGTTSTVCICMPILPFSTPLPDPLPVLARAV 60

Query: 60  AGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVSGVNHPTDQQRILNWLR 119
           AGCSNHNSVGE AARET+E+VMADALLKSGSNRSAV+AVCLAVSGVNHP D QRILNWLR
Sbjct: 61  AGCSNHNSVGETAARETLEEVMADALLKSGSNRSAVQAVCLAVSGVNHPNDVQRILNWLR 120

Query: 120 DIFPGNVRLYVHNDALAALASGTMGKLHGCVLIAGTGTIAYGFTEDGRDARAAGAGPILG 179
           DIFP +V+LYV NDA+AALASGTMGKLHGCVLIAGTGTIAYGFTEDG++ARAAGAGPILG
Sbjct: 121 DIFPNHVKLYVQNDAVAALASGTMGKLHGCVLIAGTGTIAYGFTEDGKEARAAGAGPILG 180

Query: 180 DWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWARIAA 239
           DWGSGYGIAAQALTAV+RAYDGRGP T+LTS+IL TL LSSPDELIGWTY DPSWARIAA
Sbjct: 181 DWGSGYGIAAQALTAVVRAYDGRGPQTILTSSILQTLGLSSPDELIGWTYADPSWARIAA 240

Query: 240 LVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGE 282
           LVPVVVSCAEAGDEVANKILQ SVEELALSVKAVVQRL L GE
Sbjct: 241 LVPVVVSCAEAGDEVANKILQVSVEELALSVKAVVQRLGLCGE 283

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224131396|ref|XP_002321074.1| predicted protein [Populus trichocarpa] gi|222861847|gb|EEE99389.1| predicted protein [Populus trichocarpa]

 Score =  486 bits (1251), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 238/282 (84%), Positives = 257/282 (91%), Gaps = 1/282 (0%)

Query: 2   KRYRNGEIWDFETA-EESGGREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAA 60
           KRYRNGEIWDFE    E G REVILGLDGGTTSTVCICMP+   SD  PDPLPVLARA A
Sbjct: 3   KRYRNGEIWDFEHEIGELGNREVILGLDGGTTSTVCICMPIFPFSDPFPDPLPVLARAVA 62

Query: 61  GCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRD 120
           GCSNHNSVGE AARET+E+VMADALLKSGSNRSAVRAVCL+VSGVNH TD+ R+LNWLR+
Sbjct: 63  GCSNHNSVGETAARETLEQVMADALLKSGSNRSAVRAVCLSVSGVNHSTDELRVLNWLRE 122

Query: 121 IFPGNVRLYVHNDALAALASGTMGKLHGCVLIAGTGTIAYGFTEDGRDARAAGAGPILGD 180
           IFP +V+LYV NDA+AAL+SGTMGKLHGCVLIAGTGTIA+GFTEDGR ARAAGAGP+LGD
Sbjct: 123 IFPTHVKLYVQNDAVAALSSGTMGKLHGCVLIAGTGTIAFGFTEDGRQARAAGAGPVLGD 182

Query: 181 WGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWARIAAL 240
           WGSGYGIAAQALTA++RAYDGRGP T+L+SNIL TL LSSPDELIGWTY DPSWARIAAL
Sbjct: 183 WGSGYGIAAQALTAIVRAYDGRGPVTILSSNILQTLGLSSPDELIGWTYADPSWARIAAL 242

Query: 241 VPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGE 282
           VPVVVSCAEAGD VA++ILQDSVEELALSVKAVVQRL L GE
Sbjct: 243 VPVVVSCAEAGDRVAHEILQDSVEELALSVKAVVQRLGLCGE 284

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359485331|ref|XP_002278295.2| PREDICTED: N-acetyl-D-glucosamine kinase-like [Vitis vinifera] gi|302143498|emb|CBI22059.3| unnamed protein product [Vitis vinifera]

 Score =  474 bits (1219), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 237/285 (83%), Positives = 254/285 (89%), Gaps = 3/285 (1%)

Query: 1   MKRYRNGEIWDFE--TAEESGGREVILGLDGGTTSTVCICMPVISMSD-SLPDPLPVLAR 57
           MKRYRNGEIWDFE        G EV+LGLDGGTTSTVC+CMP   +SD  LPDP+PVLAR
Sbjct: 1   MKRYRNGEIWDFEDEMPVSPDGSEVVLGLDGGTTSTVCVCMPFFPLSDRPLPDPVPVLAR 60

Query: 58  AAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVSGVNHPTDQQRILNW 117
           A AGCSNHNSVGE AARET+E+VMADAL KSGSNRSAVRAVCLAVSGVNHPTDQQRIL+W
Sbjct: 61  AVAGCSNHNSVGETAARETLEQVMADALSKSGSNRSAVRAVCLAVSGVNHPTDQQRILSW 120

Query: 118 LRDIFPGNVRLYVHNDALAALASGTMGKLHGCVLIAGTGTIAYGFTEDGRDARAAGAGPI 177
           LRDIF  +V+LYV NDA+AALASGTMG+LHGCVLIAGTGTIAYGFTEDGR+ARAAGAGPI
Sbjct: 121 LRDIFSSHVKLYVQNDAVAALASGTMGELHGCVLIAGTGTIAYGFTEDGREARAAGAGPI 180

Query: 178 LGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWARI 237
           LGDWGSGYGIAAQALTAV+RA+DGRGP T LT +IL  L LSSPDELIGWTY DPSWARI
Sbjct: 181 LGDWGSGYGIAAQALTAVVRAHDGRGPQTALTYSILRALSLSSPDELIGWTYADPSWARI 240

Query: 238 AALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGE 282
           AALVPVVVSCA+AGDEVANKIL +SVEELA SVKAVVQRL L GE
Sbjct: 241 AALVPVVVSCADAGDEVANKILLESVEELASSVKAVVQRLGLCGE 285

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356501411|ref|XP_003519518.1| PREDICTED: N-acetyl-D-glucosamine kinase-like [Glycine max]

 Score =  459 bits (1180), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 233/301 (77%), Positives = 255/301 (84%), Gaps = 9/301 (2%)

Query: 1   MKRYRNGEIWDFET---AEESGGREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLAR 57
           MKRYRNGEIW+FE      +  G  V+LGLDGGTTSTVCICMP+I  S S    LP+LAR
Sbjct: 19  MKRYRNGEIWEFEDDMGVSDGDGTGVLLGLDGGTTSTVCICMPMIPFSHSQLQSLPILAR 78

Query: 58  AAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVSGVNHPTDQQRILNW 117
           A AGCSNHNSVGE AARETIE+VMADAL K GS RS V+AVCLAVSGVNHPTDQQRIL W
Sbjct: 79  AVAGCSNHNSVGEIAARETIEQVMADALSKCGSKRSLVQAVCLAVSGVNHPTDQQRILGW 138

Query: 118 LRDIFPGNVRLYVHNDALAALASGTMGKLHGCVLIAGTGTIAYGFTEDGRDARAAGAGPI 177
           LRDIFP +VRLYV NDA+AALASGTMGKLHGCVLIAGTG+IAYGFTEDG++ARAAGAGP+
Sbjct: 139 LRDIFPSHVRLYVRNDAVAALASGTMGKLHGCVLIAGTGSIAYGFTEDGKEARAAGAGPV 198

Query: 178 LGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWARI 237
           LGDWGSGYGIAAQALTAV+RA+DGRGP TMLTS+IL TL LSS +ELIGWTY DPSWARI
Sbjct: 199 LGDWGSGYGIAAQALTAVVRAHDGRGPSTMLTSSILQTLGLSSAEELIGWTYADPSWARI 258

Query: 238 AALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEGVTYTKILKEKVPLL 297
           AALVPVVV+CAEAGDEVANKIL DSV+ELA SVKAVV+RL L G+        K   PL+
Sbjct: 259 AALVPVVVTCAEAGDEVANKILLDSVQELASSVKAVVERLGLCGQDG------KSAFPLV 312

Query: 298 M 298
           M
Sbjct: 313 M 313

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255648369|gb|ACU24635.1| unknown [Glycine max]

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 231/301 (76%), Positives = 253/301 (84%), Gaps = 9/301 (2%)

Query: 1   MKRYRNGEIWDFET---AEESGGREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLAR 57
           MKRYRNGEIW+FE      +  G  V+LGLDGGTTSTVCICMP+I  S S    LP+LAR
Sbjct: 19  MKRYRNGEIWEFEDDMGVSDGDGTGVLLGLDGGTTSTVCICMPMIPFSHSQLQSLPILAR 78

Query: 58  AAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVSGVNHPTDQQRILNW 117
           A AGCSNHNSVGE AARE IE+VMADAL K GS RS V+AVCLAVSGVNHPTDQQRIL W
Sbjct: 79  AVAGCSNHNSVGEIAAREAIEQVMADALSKCGSKRSLVQAVCLAVSGVNHPTDQQRILGW 138

Query: 118 LRDIFPGNVRLYVHNDALAALASGTMGKLHGCVLIAGTGTIAYGFTEDGRDARAAGAGPI 177
           LRDIFP +VRLYV NDA+AALASGTMGKLHGCVLIAGTG+IAYGFTEDG++ARAAGAGP+
Sbjct: 139 LRDIFPSHVRLYVRNDAVAALASGTMGKLHGCVLIAGTGSIAYGFTEDGKEARAAGAGPV 198

Query: 178 LGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWARI 237
           LGDWGSGYGIAAQALTAV+RA+D RGP TMLTS+IL TL LSS +ELIGWTY DPSWARI
Sbjct: 199 LGDWGSGYGIAAQALTAVVRAHDDRGPSTMLTSSILQTLGLSSAEELIGWTYADPSWARI 258

Query: 238 AALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEGVTYTKILKEKVPLL 297
           AALVPVVV+CAEAGDEVANKIL DSV+ELA SVKAVV+RL L G+        K   PL+
Sbjct: 259 AALVPVVVTCAEAGDEVANKILLDSVQELASSVKAVVERLGLCGQDG------KSAFPLV 312

Query: 298 M 298
           M
Sbjct: 313 M 313

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357494031|ref|XP_003617304.1| N-acetyl-D-glucosamine kinase [Medicago truncatula] gi|355518639|gb|AET00263.1| N-acetyl-D-glucosamine kinase [Medicago truncatula]

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 227/285 (79%), Positives = 246/285 (86%), Gaps = 3/285 (1%)

Query: 1   MKRYRNGEIWDFET--AEESGGREVILGLDGGTTSTVCICMP-VISMSDSLPDPLPVLAR 57
           MKRYRNGE W+FE      S    V+LGLDGGTTSTVCICMP +I  S S    LP+L+R
Sbjct: 13  MKRYRNGETWEFENDINNVSVSDGVLLGLDGGTTSTVCICMPMIIHFSHSQLQSLPILSR 72

Query: 58  AAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVSGVNHPTDQQRILNW 117
           A AGCSNHNSVGE AARET+E+VMADAL K GS RS+VRAVCLAVSGVNHPTDQQRIL+W
Sbjct: 73  AVAGCSNHNSVGEIAARETLEQVMADALSKCGSKRSSVRAVCLAVSGVNHPTDQQRILSW 132

Query: 118 LRDIFPGNVRLYVHNDALAALASGTMGKLHGCVLIAGTGTIAYGFTEDGRDARAAGAGPI 177
           LRDIFP NVRLYV NDA+AALASGT+GKLHGCVLIAGTGTIAYGFTEDGR+ARAAGAGP+
Sbjct: 133 LRDIFPSNVRLYVQNDAVAALASGTIGKLHGCVLIAGTGTIAYGFTEDGREARAAGAGPV 192

Query: 178 LGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWARI 237
           LGDWGSGYGI+AQALTAVI A+DGRGP TMLTS+IL TL LSS +ELIGWTY DPSWARI
Sbjct: 193 LGDWGSGYGISAQALTAVIEAHDGRGPSTMLTSSILQTLGLSSAEELIGWTYADPSWARI 252

Query: 238 AALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGE 282
           AALVPVVVSCAEAGDEVANKIL  S +ELA SVKAVV RL L G+
Sbjct: 253 AALVPVVVSCAEAGDEVANKILLKSAQELASSVKAVVGRLGLCGQ 297

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357494027|ref|XP_003617302.1| N-acetyl-D-glucosamine kinase [Medicago truncatula] gi|355518637|gb|AET00261.1| N-acetyl-D-glucosamine kinase [Medicago truncatula]

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 227/285 (79%), Positives = 246/285 (86%), Gaps = 3/285 (1%)

Query: 1   MKRYRNGEIWDFET--AEESGGREVILGLDGGTTSTVCICMP-VISMSDSLPDPLPVLAR 57
           MKRYRNGE W+FE      S    V+LGLDGGTTSTVCICMP +I  S S    LP+L+R
Sbjct: 1   MKRYRNGETWEFENDINNVSVSDGVLLGLDGGTTSTVCICMPMIIHFSHSQLQSLPILSR 60

Query: 58  AAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVSGVNHPTDQQRILNW 117
           A AGCSNHNSVGE AARET+E+VMADAL K GS RS+VRAVCLAVSGVNHPTDQQRIL+W
Sbjct: 61  AVAGCSNHNSVGEIAARETLEQVMADALSKCGSKRSSVRAVCLAVSGVNHPTDQQRILSW 120

Query: 118 LRDIFPGNVRLYVHNDALAALASGTMGKLHGCVLIAGTGTIAYGFTEDGRDARAAGAGPI 177
           LRDIFP NVRLYV NDA+AALASGT+GKLHGCVLIAGTGTIAYGFTEDGR+ARAAGAGP+
Sbjct: 121 LRDIFPSNVRLYVQNDAVAALASGTIGKLHGCVLIAGTGTIAYGFTEDGREARAAGAGPV 180

Query: 178 LGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWARI 237
           LGDWGSGYGI+AQALTAVI A+DGRGP TMLTS+IL TL LSS +ELIGWTY DPSWARI
Sbjct: 181 LGDWGSGYGISAQALTAVIEAHDGRGPSTMLTSSILQTLGLSSAEELIGWTYADPSWARI 240

Query: 238 AALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGE 282
           AALVPVVVSCAEAGDEVANKIL  S +ELA SVKAVV RL L G+
Sbjct: 241 AALVPVVVSCAEAGDEVANKILLKSAQELASSVKAVVGRLGLCGQ 285

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449463605|ref|XP_004149522.1| PREDICTED: LOW QUALITY PROTEIN: N-acetyl-D-glucosamine kinase-like [Cucumis sativus]

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 229/302 (75%), Positives = 254/302 (84%), Gaps = 14/302 (4%)

Query: 1   MKRYRNGEIWDFETAEESGGREVILGLDGGTTSTVCICMPVISMSD----SLPDPLPVLA 56
           MKR RN E+WDFE  E  GG ++ILG+DGGTTSTVC+C   I +SD    S     P+LA
Sbjct: 1   MKRCRNDELWDFEH-EILGGDDIILGIDGGTTSTVCVC---IGLSDPRVVSPSMSCPMLA 56

Query: 57  RAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVSGVNHPTDQQRILN 116
           R   GCSNHNSVGE AARET+E+VMA+AL KSGS RS+VRAVCLAVSGVNHPTDQQRIL+
Sbjct: 57  RVVGGCSNHNSVGETAARETLEQVMAEALSKSGSIRSSVRAVCLAVSGVNHPTDQQRILD 116

Query: 117 WLRDIFPGNVRLYVHNDALAALASGTMGKLHGCVLIAGTGTIAYGFTEDGRDARAAGAGP 176
           WLRDIFP +V LYV NDA+AALASGTMGKLHGCVLIAGTGTIAYGFTEDGR+ARAAGAGP
Sbjct: 117 WLRDIFPCHVNLYVQNDAVAALASGTMGKLHGCVLIAGTGTIAYGFTEDGREARAAGAGP 176

Query: 177 ILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWAR 236
           ILGDWGSGYGIAAQALTA+IRA+DG GP T LT +IL TL+LSSPDELIGWTY DPSWAR
Sbjct: 177 ILGDWGSGYGIAAQALTAIIRAHDGXGPHTKLTYSILKTLDLSSPDELIGWTYADPSWAR 236

Query: 237 IAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEGVTYTKILKEKVPL 296
           IAALVPVVV+CAEAGDEVAN IL DSVEELALSV+AV+QRL L+GE        +E  PL
Sbjct: 237 IAALVPVVVACAEAGDEVANNILLDSVEELALSVRAVIQRLGLAGEDG------QEAFPL 290

Query: 297 LM 298
           +M
Sbjct: 291 VM 292

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554098|ref|XP_003545386.1| PREDICTED: LOW QUALITY PROTEIN: N-acetyl-D-glucosamine kinase-like [Glycine max]

 Score =  439 bits (1129), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 226/300 (75%), Positives = 248/300 (82%), Gaps = 8/300 (2%)

Query: 1   MKRYRNGEIWDFE--TAEESGGREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARA 58
           MKRYRNGEI ++E       GG  V+LGLDGGTTSTVCICMP+I  S S    LP+LARA
Sbjct: 19  MKRYRNGEIXEYEDDMGVSDGGTGVLLGLDGGTTSTVCICMPMIPFSHSQLXSLPILARA 78

Query: 59  AAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVSGVNHPTDQQRILNWL 118
            AGCSNHN VGE AARETIE+VMADAL K GS RS V+AVCLAVSGVNHPTDQQRIL WL
Sbjct: 79  VAGCSNHNGVGEIAARETIEQVMADALSKCGSKRSFVQAVCLAVSGVNHPTDQQRILGWL 138

Query: 119 RDIFPGNVRLYVHNDALAALASGTMGKLHGCVLIAGTGTIAYGFTEDGRDARAAGAGPIL 178
           RDIFP +VRLYV NDA+AALASGTMGK+HGCVLIAGTG+IAYGFTEDG++ARAAGAGP+L
Sbjct: 139 RDIFPSHVRLYVRNDAVAALASGTMGKVHGCVLIAGTGSIAYGFTEDGKEARAAGAGPVL 198

Query: 179 GDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWARIA 238
           GDWGSGYGIAA  LTAV+RA+DGRGP TMLTS+IL TL LSS + LIGWTY D  WARIA
Sbjct: 199 GDWGSGYGIAAHGLTAVVRAHDGRGPSTMLTSSILQTLGLSSTEALIGWTYADFPWARIA 258

Query: 239 ALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEGVTYTKILKEKVPLLM 298
           ALVPVVV+CAEAGDEVANKIL DSV+ELA SVKAVV+RL L GE        K   PL+M
Sbjct: 259 ALVPVVVTCAEAGDEVANKILLDSVQELASSVKAVVERLGLCGEDG------KSAFPLVM 312

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460020|ref|XP_004147744.1| PREDICTED: N-acetyl-D-glucosamine kinase-like [Cucumis sativus] gi|449516451|ref|XP_004165260.1| PREDICTED: N-acetyl-D-glucosamine kinase-like [Cucumis sativus]

 Score =  426 bits (1095), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 215/287 (74%), Positives = 246/287 (85%), Gaps = 7/287 (2%)

Query: 2   KRYRNGEIWDFE---TAEESGGR---EVILGLDGGTTSTVCICMPVIS-MSDSLPDPLPV 54
           K++RNGEI +F+   +A  +GGR   +VILG+DGGTTST C+C+P +   S  LPD LP+
Sbjct: 3   KKHRNGEISEFDRELSAGTAGGRAVGDVILGIDGGTTSTTCVCLPFLHPHSLHLPDSLPL 62

Query: 55  LARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVSGVNHPTDQQRI 114
           LAR  AGCSNHNSVGE AARET+E+VMA+AL KSG + SAVRA+CL++SGVNHPTDQQRI
Sbjct: 63  LARVEAGCSNHNSVGETAARETLEQVMAEALSKSGLDLSAVRAICLSISGVNHPTDQQRI 122

Query: 115 LNWLRDIFPGNVRLYVHNDALAALASGTMGKLHGCVLIAGTGTIAYGFTEDGRDARAAGA 174
           LNW RD FP +V+LYV NDA AALASGTMGKL GCVLIAGTG+IAYGFT+DGR+ARAAGA
Sbjct: 123 LNWFRDKFPSHVKLYVRNDAAAALASGTMGKLSGCVLIAGTGSIAYGFTDDGREARAAGA 182

Query: 175 GPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSW 234
           GPILGDWGSGYGI+AQALTA+IRA+DGRGP T LT++IL TL LSS DELIGWTY D SW
Sbjct: 183 GPILGDWGSGYGISAQALTAIIRAHDGRGPQTKLTNSILQTLGLSSADELIGWTYADQSW 242

Query: 235 ARIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSG 281
           ARIAALVP VV+CAEAGDEVAN ILQDSV+ELALSV AVVQRL L G
Sbjct: 243 ARIAALVPAVVACAEAGDEVANNILQDSVKELALSVTAVVQRLGLCG 289

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	319
TAIR|locus:2028135	351	AT1G30540 [Arabidopsis thalian	0.855	0.777	0.693	3.4e-100
DICTYBASE|DDB_G0284433	319	DDB_G0284433 "N-acetyl-D-gluco	0.789	0.789	0.360	8.7e-40
UNIPROTKB|Q8EBK6	300	nagK "N-acetylglucosamine kina	0.733	0.78	0.280	4.9e-12
TIGR_CMR|SO_3507	300	SO_3507 "conserved hypothetica	0.733	0.78	0.280	4.9e-12
UNIPROTKB|Q81QF9	303	BAS2294 "Uncharacterized prote	0.510	0.537	0.284	9.9e-09
TIGR_CMR|BA_2466	303	BA_2466 "conserved hypothetica	0.510	0.537	0.284	9.9e-09
UNIPROTKB|F1SLE3	360	NAGK "Uncharacterized protein"	0.796	0.705	0.275	6e-08
UNIPROTKB|Q3SZM9	344	NAGK "N-acetyl-D-glucosamine k	0.692	0.642	0.272	1.2e-07
UNIPROTKB|Q487J0	297	CPS_1026 "BadF/BadG/BcrA/BcrD	0.764	0.821	0.253	2.4e-07
TIGR_CMR|CPS_1026	297	CPS_1026 "BadF/BadG/BcrA/BcrD	0.764	0.821	0.253	2.4e-07

TAIR|locus:2028135 AT1G30540 [Arabidopsis thaliana (taxid:3702)]

 Score = 994 (355.0 bits), Expect = 3.4e-100, P = 3.4e-100
 Identities = 190/274 (69%), Positives = 223/274 (81%)

Query:    13 ETAEESGG-REVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGED 71
             E  EE+G    VILGLDGG TSTVC+C+P  S  +  PDPLP+L RA AGC+N NSVGE 
Sbjct:    20 EATEENGFVNGVILGLDGGATSTVCVCVPFFSFGERFPDPLPILGRAVAGCTNRNSVGET 79

Query:    72 AARETIEKVMADALLKSGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVH 131
             AAR+++E+V+++AL++SG ++S VR VCL VSGVNHP+DQ++I NW+RD+FP +V++YV 
Sbjct:    80 AARDSLEQVISEALVQSGFDKSDVRGVCLGVSGVNHPSDQEKIENWIRDMFPSHVKVYVQ 139

Query:   132 NDALAALASGTMGKLHGCVLIAGTGTIAYGFTEXXXXXXXXXXXPILGDWGSGYGIAAQA 191
             NDA+ ALASGTMGKLHGCVLIAGTG IAYGF E           PILGDWGSGYGIAAQA
Sbjct:   140 NDAIVALASGTMGKLHGCVLIAGTGCIAYGFDEDGKEARASGGGPILGDWGSGYGIAAQA 199

Query:   192 LTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWARIAALVPVVVSCAEAG 251
             LTAVIRA+DGRGP TMLTS IL  L LSSPDELIGWTY DPSWARIAALVP VVSCAEAG
Sbjct:   200 LTAVIRAHDGRGPQTMLTSTILKALGLSSPDELIGWTYADPSWARIAALVPQVVSCAEAG 259

Query:   252 DEVANKILQDSVEELALSVKAVVQRLSLSGEGVT 285
             DE+++KIL D+ E+LALSVKAVVQRL L G+  T
Sbjct:   260 DEISDKILVDAAEDLALSVKAVVQRLGLCGKDGT 293

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016887 "ATPase activity" evidence=ISS

DICTYBASE|DDB_G0284433 DDB_G0284433 "N-acetyl-D-glucosamine kinase" [Dictyostelium discoideum (taxid:44689)]

 Score = 424 (154.3 bits), Expect = 8.7e-40, P = 8.7e-40
 Identities = 98/272 (36%), Positives = 149/272 (54%)

Query:    21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKV 80
             +E+ +G+DGG T T  + +      DS    L   AR  + CSN++SVGED A+  I + 
Sbjct:     3 KEIFIGIDGGGTKTSTVAV------DSNGQEL---ARHTSPCSNYHSVGEDLAKAAINEG 53

Query:    81 MADALLK------SGSNRSA-VRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHND 133
             +   + K         N+   V ++CL +SGV+   D+  + +W+ ++   ++   +HND
Sbjct:    54 IKYVIRKVKETITDDDNKEVTVGSICLGMSGVDREKDKLLVKSWVTELLGESINYSIHND 113

Query:   134 ALAALASGTMGKLHGCVLIAGTGTIAYGFTEXXXXXXXXXXXPILGDWGSGYGIAAQALT 193
             A+ AL+SGT GKL G V+I GTG I+ GF             P+LGD+GSGY I    L 
Sbjct:   114 AIVALSSGTQGKLFGVVIICGTGCISLGFNREGVSGRSGGWGPLLGDYGSGYQIGYDILR 173

Query:   194 AVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDP---SWARIAALVPVVVSCAEA 250
              V++A D  GP T LT  +L  L+L+  ++LI W Y DP   SW + A L P+    A+ 
Sbjct:   174 HVLKAKDQVGPKTSLTQVLLEKLQLTKEEDLISWAY-DPKTQSWQKFAQLSPLAFEQAQL 232

Query:   251 GDEVANKILQDSVEELALSVKAVVQRLSLSGE 282
             GDE++N IL D+   L   + +V+++L L  E
Sbjct:   233 GDEISNLILVDAANALYDLINSVIKKLGLDKE 264

GO:0045127 "N-acetylglucosamine kinase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|Q8EBK6 nagK "N-acetylglucosamine kinase NagK" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 181 (68.8 bits), Expect = 4.9e-12, P = 4.9e-12
 Identities = 71/253 (28%), Positives = 107/253 (42%)

Query:    17 ESGGREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARET 76
             ++  +++ +G+DGG +     C   I  +D       VL    AG +N    G     E+
Sbjct:     5 QTNDQQLFIGVDGGGSK----CRATIYTADGT-----VLGTGVAGRANPLH-GLAQTFES 54

Query:    77 IEKVMADALLKSG--SNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDA 134
             IE     ALL +G  +  S +    L ++GVN P   Q ++NW          +YV  D 
Sbjct:    55 IEASAHQALLDAGMKATDSHLLVAGLGLAGVNVPRLYQDVVNWQHPF----AAMYVTTDL 110

Query:   135 LAALASGTMGKLHGCVLIAGTGTIAYGFTEXXXXXXXXXXXPILGDWGSGYGIAAQALTA 194
               A      G   G V+I GTG+  Y                 LGD GSG  +  +A   
Sbjct:   111 HTACIGAHRGA-DGAVIITGTGSCGYAHVGDASLSIGGHGFA-LGDKGSGAWLGLKAAEH 168

Query:   195 VIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWARIAALVPVVVSCAEAGDEV 254
             V+ A DG    T LT  +LS L +     ++       S +  A L   V+ CA AGD+V
Sbjct:   169 VLLALDGFATPTALTEMLLSHLGVKDALGIVEHL-AGKSSSCYAQLARNVLDCANAGDQV 227

Query:   255 ANKILQDSVEELA 267
             A  I+Q+  + ++
Sbjct:   228 AIAIVQEGADYIS 240

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SO_3507 SO_3507 "conserved hypothetical protein" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 181 (68.8 bits), Expect = 4.9e-12, P = 4.9e-12
 Identities = 71/253 (28%), Positives = 107/253 (42%)

Query:    17 ESGGREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARET 76
             ++  +++ +G+DGG +     C   I  +D       VL    AG +N    G     E+
Sbjct:     5 QTNDQQLFIGVDGGGSK----CRATIYTADGT-----VLGTGVAGRANPLH-GLAQTFES 54

Query:    77 IEKVMADALLKSG--SNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDA 134
             IE     ALL +G  +  S +    L ++GVN P   Q ++NW          +YV  D 
Sbjct:    55 IEASAHQALLDAGMKATDSHLLVAGLGLAGVNVPRLYQDVVNWQHPF----AAMYVTTDL 110

Query:   135 LAALASGTMGKLHGCVLIAGTGTIAYGFTEXXXXXXXXXXXPILGDWGSGYGIAAQALTA 194
               A      G   G V+I GTG+  Y                 LGD GSG  +  +A   
Sbjct:   111 HTACIGAHRGA-DGAVIITGTGSCGYAHVGDASLSIGGHGFA-LGDKGSGAWLGLKAAEH 168

Query:   195 VIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWARIAALVPVVVSCAEAGDEV 254
             V+ A DG    T LT  +LS L +     ++       S +  A L   V+ CA AGD+V
Sbjct:   169 VLLALDGFATPTALTEMLLSHLGVKDALGIVEHL-AGKSSSCYAQLARNVLDCANAGDQV 227

Query:   255 ANKILQDSVEELA 267
             A  I+Q+  + ++
Sbjct:   228 AIAIVQEGADYIS 240

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q81QF9 BAS2294 "Uncharacterized protein" [Bacillus anthracis (taxid:1392)]

 Score = 154 (59.3 bits), Expect = 9.9e-09, P = 9.9e-09
 Identities = 48/169 (28%), Positives = 80/169 (47%)

Query:    98 VCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTMGKLHGCVLIAGTGT 157
             +CL ++G++     +  L  L+  +   +++ V NDA+ A A+   GK  G + I GTG 
Sbjct:    66 ICLGLAGISGANTNELTLR-LKQKY--GIQIEVFNDAMIAHAAALKGK-DGILTIGGTGA 121

Query:   158 IAYGFTEXXXXXXXXXXXPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLE 217
             I  G  +            ILGD GSGY IA Q L  +   +D       L+  I    +
Sbjct:   122 ICLG-RKGEVYEYSGGWGHILGDEGSGYWIALQGLKRMANQFDQGVTLCPLSLRIQDEFQ 180

Query:   218 LSSPDELIGWTYVDPSWARIAALVPVVVSCAEAGDEVANKILQDSVEEL 266
             L +   +    Y   S  ++AA+ P+V+  A  G++ A++I+  +  EL
Sbjct:   181 LLTSSHIKRLVY-SSSKDKVAAIAPLVIREARNGNDAAHEIMMQAGNEL 228

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|BA_2466 BA_2466 "conserved hypothetical protein" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 154 (59.3 bits), Expect = 9.9e-09, P = 9.9e-09
 Identities = 48/169 (28%), Positives = 80/169 (47%)

Query:    98 VCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTMGKLHGCVLIAGTGT 157
             +CL ++G++     +  L  L+  +   +++ V NDA+ A A+   GK  G + I GTG 
Sbjct:    66 ICLGLAGISGANTNELTLR-LKQKY--GIQIEVFNDAMIAHAAALKGK-DGILTIGGTGA 121

Query:   158 IAYGFTEXXXXXXXXXXXPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLE 217
             I  G  +            ILGD GSGY IA Q L  +   +D       L+  I    +
Sbjct:   122 ICLG-RKGEVYEYSGGWGHILGDEGSGYWIALQGLKRMANQFDQGVTLCPLSLRIQDEFQ 180

Query:   218 LSSPDELIGWTYVDPSWARIAALVPVVVSCAEAGDEVANKILQDSVEEL 266
             L +   +    Y   S  ++AA+ P+V+  A  G++ A++I+  +  EL
Sbjct:   181 LLTSSHIKRLVY-SSSKDKVAAIAPLVIREARNGNDAAHEIMMQAGNEL 228

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|F1SLE3 NAGK "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 149 (57.5 bits), Expect = 6.0e-08, P = 6.0e-08
 Identities = 75/272 (27%), Positives = 114/272 (41%)

Query:    20 GREVILGLDGGTTSTVCICMPVISMSDS------LPDPLPVLARAAAGCSNHNSVGEDAA 73
             GRE   G  GG +S++      +    +      L +   +LA A    +NH  +G D  
Sbjct:     2 GREANGGTSGGGSSSMAALYGGVEGGGTRSKVLLLSEDGQILAEADGLSTNHWLIGTDKC 61

Query:    74 RETIEKVMADALLKSGSNRSA-VRAVCLAVSGVNHPTDQQRIL-NWLRDIFPGNVRLY-V 130
              E I +++  A  K+G +    +R++ L++SG +   D  RIL   LRD FP     Y +
Sbjct:    62 VERINEMVNRAKRKAGVDPLVPLRSLGLSLSGGDQE-DAVRILMEELRDRFPYLSESYLI 120

Query:   131 HNDALAALASGTMGKLHGCVLIAGTGTIAYGFTEXXXXXXXXXXXPILGDWGSGYGIAAQ 190
               DA  ++A+ T     G VLI+GTG+                   ++GD GS Y IA Q
Sbjct:   121 TTDAAGSIATATPDG--GIVLISGTGSNCRLINPDGSESGCGGWGHMMGDEGSAYWIAHQ 178

Query:   191 ALTAVIRAYDG--RGP-DTMLTSNILSTLELSSPDEL--IGWTYVDPSWARIAALVPVVV 245
             A+  V  + D     P D       +       PD L  +   Y D    R A     V 
Sbjct:   179 AVKIVFDSIDNLEAAPHDIGYVKQAMFNY-FQVPDRLGILTHLYRDFDKCRFAGFCRKVA 237

Query:   246 SCAEAGDEVANKILQDSVEELALSVKAVVQRL 277
               A+ GD ++  I + + E L   V AV+  +
Sbjct:   238 EGAQQGDPLSRYIFRKAGEMLGRHVVAVLPEI 269

GO:0045127 "N-acetylglucosamine kinase activity" evidence=IEA

GO:0009384 "N-acylmannosamine kinase activity" evidence=IEA

GO:0006044 "N-acetylglucosamine metabolic process" evidence=IEA

UNIPROTKB|Q3SZM9 NAGK "N-acetyl-D-glucosamine kinase" [Bos taurus (taxid:9913)]

 Score = 146 (56.5 bits), Expect = 1.2e-07, P = 1.2e-07
 Identities = 63/231 (27%), Positives = 99/231 (42%)

Query:    54 VLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSA-VRAVCLAVSGVNHPTDQQ 112
             +LA A    +NH  +G D   E I +++  A  K+G +    +R + L++SG +     +
Sbjct:    26 ILAEADGLSTNHWLIGTDKCVERINEMVNRAKRKAGVDPLVPLRGLGLSLSGGDQEDAVR 85

Query:   113 RILNWLRDIFPGNVRLY-VHNDALAALASGTMGKLHGCVLIAGTGTIAYGFTEXXXXXXX 171
              ++  LRD FP     Y +  DA  ++A+ T     G VLI+GTG+              
Sbjct:    86 MLMEELRDRFPYLSESYLITTDAAGSIATATPDG--GVVLISGTGSNCRLINPDGSESGC 143

Query:   172 XXXXPILGDWGSGYGIAAQALTAVIRAYDG--RGP-DTMLTSNILSTLELSSPDEL--IG 226
                  ++GD GS Y IA QA+  V  + D     P D       +       PD L  + 
Sbjct:   144 GGWGHMMGDEGSAYWIAHQAVKIVFDSIDNLEAAPHDIGYVKQAMFNY-FQVPDRLGILT 202

Query:   227 WTYVDPSWARIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRL 277
               Y D   +R A     V   A+ GD ++  I + + E L   V AV+  +
Sbjct:   203 HLYRDFDKSRFAGFCRKVAEGAQQGDPLSRCIFRKAGEMLGRHVVAVLPEI 253

GO:0045127 "N-acetylglucosamine kinase activity" evidence=ISS

GO:0019262 "N-acetylneuraminate catabolic process" evidence=IEA

GO:0009384 "N-acylmannosamine kinase activity" evidence=IEA

GO:0006044 "N-acetylglucosamine metabolic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|Q487J0 CPS_1026 "BadF/BadG/BcrA/BcrD ATPase family protein" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 142 (55.0 bits), Expect = 2.4e-07, P = 2.4e-07
 Identities = 69/272 (25%), Positives = 112/272 (41%)

Query:    22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSN--HN-SVGEDAARETIE 78
             ++ LG+DGG +     C  +I   D+      +L    +G  N  H      ++  E+ +
Sbjct:    10 KLFLGIDGGGSK----CKAIIMNEDN-----EILGTGISGPGNPLHGFEQATNSITESAK 60

Query:    79 KVMADALLKSGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAAL 138
               + DA L +      V  V LA  GVN P    ++ +W         ++++  D L A 
Sbjct:    61 LALEDAGLVNIELNELVAGVGLA--GVNIPALFNKMASWQHPF----KQMHLATDLLIAC 114

Query:   139 ASGTMGKLHGCVLIAGTGTIAYGFTEXXXXXXXXXXXPILGDWGSGYGIAAQALTAVIRA 198
              +   GK  G V+I+GTG+  +   +           P  GD GSG     Q +  V+ +
Sbjct:   115 LAAHDGK-DGAVIISGTGSCGFSCVDEQHTIVGAHGFPH-GDKGSGAWFGLQGVKQVLLS 172

Query:   199 YDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWARIAALVPVVVSCAEAGDEVANKI 258
              DG    T ++  +L  L      +L+            A    +V   AEAGD VA  I
Sbjct:   173 LDGLVQPTSMSKVLLQKLNCKDDTDLVE-AVASQKATFYAQQANLVFDAAEAGDNVALAI 231

Query:   259 LQDSVEEL-----ALSVKAVVQRLSLSGEGVT 285
             + +  E +      L+VK    R+S+ G G+T
Sbjct:   232 VTEGAEYINNIARTLAVKNP-PRISMLG-GLT 261

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CPS_1026 CPS_1026 "BadF/BadG/BcrA/BcrD ATPase family protein" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 142 (55.0 bits), Expect = 2.4e-07, P = 2.4e-07
 Identities = 69/272 (25%), Positives = 112/272 (41%)

Query:    22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSN--HN-SVGEDAARETIE 78
             ++ LG+DGG +     C  +I   D+      +L    +G  N  H      ++  E+ +
Sbjct:    10 KLFLGIDGGGSK----CKAIIMNEDN-----EILGTGISGPGNPLHGFEQATNSITESAK 60

Query:    79 KVMADALLKSGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAAL 138
               + DA L +      V  V LA  GVN P    ++ +W         ++++  D L A 
Sbjct:    61 LALEDAGLVNIELNELVAGVGLA--GVNIPALFNKMASWQHPF----KQMHLATDLLIAC 114

Query:   139 ASGTMGKLHGCVLIAGTGTIAYGFTEXXXXXXXXXXXPILGDWGSGYGIAAQALTAVIRA 198
              +   GK  G V+I+GTG+  +   +           P  GD GSG     Q +  V+ +
Sbjct:   115 LAAHDGK-DGAVIISGTGSCGFSCVDEQHTIVGAHGFPH-GDKGSGAWFGLQGVKQVLLS 172

Query:   199 YDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWARIAALVPVVVSCAEAGDEVANKI 258
              DG    T ++  +L  L      +L+            A    +V   AEAGD VA  I
Sbjct:   173 LDGLVQPTSMSKVLLQKLNCKDDTDLVE-AVASQKATFYAQQANLVFDAAEAGDNVALAI 231

Query:   259 LQDSVEEL-----ALSVKAVVQRLSLSGEGVT 285
             + +  E +      L+VK    R+S+ G G+T
Sbjct:   232 VTEGAEYINNIARTLAVKNP-PRISMLG-GLT 261

GO:0008150 "biological_process" evidence=ND

GO:0016887 "ATPase activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q54PM7	NAGK_DICDI	2, ., 7, ., 1, ., 5, 9	0.3554	0.8087	0.8087	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.7.1.59	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.XIV.3021.1 hypothetical protein (319 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	319
pfam01869	257	pfam01869, BcrAD_BadFG, BadF/BadG/BcrA/BcrD ATPase	6e-51
COG2971	301	COG2971, COG2971, Predicted N-acetylglucosamine ki	1e-37
cd00012	185	cd00012, NBD_sugar-kinase_HSP70_actin, Nucleotide-	0.002

>gnl|CDD|216750 pfam01869, BcrAD_BadFG, BadF/BadG/BcrA/BcrD ATPase family

 Score =  169 bits (429), Expect = 6e-51
 Identities = 86/264 (32%), Positives = 120/264 (45%), Gaps = 21/264 (7%)

Query: 26  GLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADAL 85
           G+DGG+T T  + M          D   VL RA +G +N  SVG +AA + I   + +AL
Sbjct: 1   GIDGGSTKTKAVLMDE--------DGE-VLGRAISGSANIESVGVEAAVKNIVDAINEAL 51

Query: 86  LKSGSNRSAVRAVCLAVSGVNHPTDQQRILNW-LRDIFPGNVRLYVHNDALAALASGTMG 144
            ++G +   +    L   G        +     +R+I      + VH D   ALA  T G
Sbjct: 52  EEAGLDPEDIEYRGLT--GYGLAGLDGKFAKDIVREIL---EEISVHTDGAVALAPATRG 106

Query: 145 KLHGCVLIAGTGTIAYGFTEDGRDARAAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGP 204
           +  G + I GTG+   G  +DG+  R  G G   GD GS   IAA+AL AV+R  DG   
Sbjct: 107 E-DGVIDIGGTGSKVIGL-DDGKVVRFGGNGFCAGDEGSFLWIAARALGAVLRELDGLAA 164

Query: 205 DTMLTSNILSTLELSSPDELIGWTYVDP-SWARIAALVPVVVSCAEAGDEVANKILQDSV 263
            T L   ++  L     D+LI   Y      +  A     VV  A +GD  A  IL  + 
Sbjct: 165 KTTLADVVMKALG---VDDLIAVAYRKGAINSDCAVFAEQVVEHALSGDPKAEDILAGAA 221

Query: 264 EELALSVKAVVQRLSLSGEGVTYT 287
           E LAL V A+++RL    + V  T
Sbjct: 222 ESLALRVAALLKRLGPVPDQVVLT 245

This family includes the BadF and BadG proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase. An uncharacterized protein from Aquifex aeolicus contains two copies of this region suggesting that the family may structurally dimerise. This family appears to be related to pfam00370. Length = 257

>gnl|CDD|225518 COG2971, COG2971, Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism]

 Score =  135 bits (342), Expect = 1e-37
 Identities = 85/264 (32%), Positives = 131/264 (49%), Gaps = 20/264 (7%)

Query: 24  ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMAD 83
            LG+DGG T T  +      ++D   +   VL R  +G +N   VG++ A   I+  + +
Sbjct: 7   FLGVDGGGTKTRAV------LADEDGN---VLGRGKSGPANIQLVGKEEAVRNIKDAIRE 57

Query: 84  ALLKSGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTM 143
           AL ++G     + A+   ++      ++ R        F G V   V ND L AL     
Sbjct: 58  ALDEAGLKPDEIAAIVAGLALAGANVEEAREELERLLPFAGKVD--VENDGLIALRGALG 115

Query: 144 GKLHGCVLIAGTGTIAYGFTEDGRDARAAGAGPILGDWGSGYGIAAQALTAVIRAYDGRG 203
               G ++IAGTG+I YG  + GR  R  G G  +GD GSG  I  +AL   +RA+DGR 
Sbjct: 116 DD-DGIIVIAGTGSIGYGR-KGGRRERVGGWGFPIGDEGSGAWIGREALQEALRAFDGRR 173

Query: 204 PDTMLTSNILSTLELSSPDELIGWTYVD-PSWARIAALVPVVVSCAEAGDEVANKILQDS 262
             T LT  +++   L  P++L+ + Y   P   +IAAL P V   A  GD VA +IL+++
Sbjct: 174 EATPLTDAVMAEFNL-DPEDLVAFIYKAGPGDKKIAALAPAVFEAARKGDPVAIRILKEA 232

Query: 263 VEELALSVKAV-----VQRLSLSG 281
              +A  ++A+      ++LSL G
Sbjct: 233 AAYIATLLEALSIFNGSEKLSLLG 256

Length = 301

>gnl|CDD|212657 cd00012, NBD_sugar-kinase_HSP70_actin, Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily

 Score = 38.3 bits (89), Expect = 0.002
 Identities = 52/203 (25%), Positives = 78/203 (38%), Gaps = 36/203 (17%)

Query: 25  LGLDGGTTSTVCICM---PVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVM 81
           LG+D G+TST          I   + +P P+                 E+A RE +++ +
Sbjct: 1   LGIDIGSTSTKAGVADLDGEILPEEIVPTPVGRPGAVTDL-----DELEEALRELLKEAL 55

Query: 82  ADALLKSGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFP--------GNVRLYVHND 133
                +       + AV +   G     +++ I+     + P        G V + V ND
Sbjct: 56  RQLKSE-------IDAVGITEPGGVPKENREVIILPNLLLIPLALALEDLGGVPVAVVND 108

Query: 134 A-LAALASGTMGKLH--GCVLIAGTGTIAYGFTEDGRDARAAGAGPILGDWGSGYGIAAQ 190
           A  AALA G  GK      V+  GTGT      EDG+    A          +G    A+
Sbjct: 109 AVAAALAEGLFGKEEDTVLVVDLGTGTTGIAIVEDGKGGVGA----------AGELGIAE 158

Query: 191 ALTAVIRAYDGRGPDTMLTSNIL 213
           AL AV+   DG     +LT + L
Sbjct: 159 ALAAVLNLLDGLPDAVVLTGSAL 181

This superfamily includes the actin family, the HSP70 family of molecular chaperones and nucleotide exchange factors, the ROK (repressor, ORF, kinase) family, the hexokinase family, the FGGY family (which includes glycerol kinase and similar carbohydrate kinases such as rhamnulokinase and xylulokinase), the exopolyphosphatase/guanosine pentaphosphate phosphohydrolase/nucleoside triphosphate diphosphohydrolase family, propionate kinase/acetate kinase family, glycerol dehydratase reactivase, 2-hydroxyglutaryl-CoA dehydratase component A, N-acetylglucosamine kinase, butyrate kinase 2, Escherichia coli YeaZ and similar glycoproteases, the cell shape-determining protein MreB, the plasmid DNA segregation factor ParM, cell cycle proteins FtsA, Pili assembly protein PilM, ethanolamine utilization protein EutJ, and similar proteins. The nucleotide-binding site residues are conserved; the nucleotide sits in a deep cleft formed between the two lobes of the nucleotide-binding domain (NBD). Substrate binding to superfamily members is associated with closure of this catalytic site cleft. The functional activities of several members of the superfamily, including hexokinases, actin, and HSP70s, are modulated by allosteric effectors, which may act on the cleft closure. Length = 185

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	319
KOG1794	336	consensus N-Acetylglucosamine kinase [Carbohydrate	100.0
COG2971	301	Predicted N-acetylglucosamine kinase [Carbohydrate	100.0
PF01869	271	BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; In	100.0
COG1940	314	NagC Transcriptional regulator/sugar kinase [Trans	100.0
TIGR00744	318	ROK_glcA_fam ROK family protein (putative glucokin	100.0
PRK13310	303	N-acetyl-D-glucosamine kinase; Provisional	100.0
PRK09557	301	fructokinase; Reviewed	100.0
PRK05082	291	N-acetylmannosamine kinase; Provisional	99.97
PRK09698	302	D-allose kinase; Provisional	99.97
PRK13311	256	N-acetyl-D-glucosamine kinase; Provisional	99.97
PRK00292	316	glk glucokinase; Provisional	99.96
PRK12408	336	glucokinase; Provisional	99.95
PRK14101	638	bifunctional glucokinase/RpiR family transcription	99.93
TIGR00749	316	glk glucokinase, proteobacterial type. This model	99.92
PF00480	179	ROK: ROK family; InterPro: IPR000600 A family of b	99.86
TIGR02707	351	butyr_kinase butyrate kinase. This model represent	99.8
PTZ00288	405	glucokinase 1; Provisional	99.74
PRK03011	358	butyrate kinase; Provisional	99.66
PF02685	316	Glucokinase: Glucokinase; InterPro: IPR003836 Gluc	99.47
smart00732	99	YqgFc Likely ribonuclease with RNase H fold. YqgF	99.28
COG0837	320	Glk Glucokinase [Carbohydrate transport and metabo	99.21
PRK13318	258	pantothenate kinase; Reviewed	98.84
PRK00976	326	hypothetical protein; Provisional	98.7
PLN02914	490	hexokinase	98.67
TIGR00241	248	CoA_E_activ CoA-substrate-specific enzyme activase	98.56
PLN02405	497	hexokinase	98.48
PRK13321	256	pantothenate kinase; Reviewed	98.48
PTZ00107	464	hexokinase; Provisional	98.47
PLN02596	490	hexokinase-like	98.4
PLN02362	509	hexokinase	98.39
TIGR01312	481	XylB D-xylulose kinase. D-xylulose kinase (XylB) g	98.36
PRK00047	498	glpK glycerol kinase; Provisional	98.28
PF00370	245	FGGY_N: FGGY family of carbohydrate kinases, N-ter	98.23
PRK10939	520	autoinducer-2 (AI-2) kinase; Provisional	98.14
PRK04123	548	ribulokinase; Provisional	98.09
TIGR01311	493	glycerol_kin glycerol kinase. This model describes	98.08
COG1070	502	XylB Sugar (pentulose and hexulose) kinases [Carbo	98.04
TIGR01315	541	5C_CHO_kinase FGGY-family pentulose kinase. This m	98.0
PTZ00294	504	glycerol kinase-like protein; Provisional	97.93
PRK15080	267	ethanolamine utilization protein EutJ; Provisional	97.91
TIGR01234	536	L-ribulokinase L-ribulokinase. This enzyme catalyz	97.87
TIGR01314	505	gntK_FGGY gluconate kinase, FGGY type. Gluconate i	97.86
COG1069	544	AraB Ribulose kinase [Energy production and conver	97.84
PLN02295	512	glycerol kinase	97.84
COG5026	466	Hexokinase [Carbohydrate transport and metabolism]	97.81
COG3426	358	Butyrate kinase [Energy production and conversion]	97.8
TIGR02529	239	EutJ ethanolamine utilization protein EutJ family	97.78
PRK10331	470	L-fuculokinase; Provisional	97.74
PRK13317	277	pantothenate kinase; Provisional	97.68
PRK15027	484	xylulokinase; Provisional	97.68
TIGR03192	293	benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q s	97.67
TIGR02628	465	fuculo_kin_coli L-fuculokinase. Members of this fa	97.59
PF00349	206	Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexo	97.54
COG0554	499	GlpK Glycerol kinase [Energy production and conver	97.52
TIGR03286	404	methan_mark_15 putative methanogenesis marker prot	97.41
COG1924	396	Activator of 2-hydroxyglutaryl-CoA dehydratase (HS	97.39
PF00871	388	Acetate_kinase: Acetokinase family; InterPro: IPR0	97.38
PF05378	176	Hydant_A_N: Hydantoinase/oxoprolinase N-terminal r	97.37
PLN02669	556	xylulokinase	97.29
TIGR00329	305	gcp_kae1 metallohydrolase, glycoprotease/Kae1 fami	97.28
TIGR02261	262	benz_CoA_red_D benzoyl-CoA reductase, bcr type, su	97.23
TIGR00555	279	panK_eukar pantothenate kinase, eukaryotic/staphyl	96.98
KOG1369	474	consensus Hexokinase [Carbohydrate transport and m	96.87
PRK09605	535	bifunctional UGMP family protein/serine/threonine	96.7
PRK13320	244	pantothenate kinase; Reviewed	96.7
KOG2517	516	consensus Ribulose kinase and related carbohydrate	96.58
PRK09604	332	UGMP family protein; Validated	96.43
TIGR02259	432	benz_CoA_red_A benzoyl-CoA reductase, bcr type, su	96.34
TIGR03722	322	arch_KAE1 universal archaeal protein Kae1. This fa	95.96
PRK13324	258	pantothenate kinase; Reviewed	95.93
PRK13326	262	pantothenate kinase; Reviewed	95.74
TIGR00671	243	baf pantothenate kinase, type III. This model desc	95.63
PRK14878	323	UGMP family protein; Provisional	95.61
PRK13331	251	pantothenate kinase; Reviewed	95.53
PRK12440	397	acetate kinase; Reviewed	95.42
TIGR00016	404	ackA acetate kinase. Acetate kinase is involved in	95.23
PLN02666	1275	5-oxoprolinase	95.02
smart00842	187	FtsA Cell division protein FtsA. FtsA is essential	95.01
PRK12379	396	propionate/acetate kinase; Provisional	94.71
PF14574	412	DUF4445: Domain of unknown function (DUF4445); PDB	94.69
PRK07157	400	acetate kinase; Provisional	94.64
PRK09472	420	ftsA cell division protein FtsA; Reviewed	94.53
COG1521	251	Pantothenate kinase type III (Bvg accessory factor	94.44
PRK00180	402	acetate kinase A/propionate kinase 2; Reviewed	94.4
KOG2707	405	consensus Predicted metalloprotease with chaperone	94.24
PF06277	473	EutA: Ethanolamine utilisation protein EutA; Inter	94.17
PRK13322	246	pantothenate kinase; Reviewed	94.16
TIGR02627	454	rhamnulo_kin rhamnulokinase. This model describes	94.0
PRK12397	404	propionate kinase; Reviewed	93.85
COG0145	674	HyuA N-methylhydantoinase A/acetone carboxylase, b	93.84
COG1548	330	Predicted transcriptional regulator/sugar kinase [	93.82
PRK00109	138	Holliday junction resolvase-like protein; Reviewed	93.8
TIGR03123	318	one_C_unchar_1 probable H4MPT-linked C1 transfer p	93.53
TIGR01174	371	ftsA cell division protein FtsA. This bacterial ce	93.04
PF03652	135	UPF0081: Uncharacterised protein family (UPF0081);	91.39
TIGR03706	300	exo_poly_only exopolyphosphatase. It appears that	91.3
PRK10854	513	exopolyphosphatase; Provisional	91.23
PF03630	341	Fumble: Fumble ; InterPro: IPR004567 Pantothenate	91.08
PTZ00340	345	O-sialoglycoprotein endopeptidase-like protein; Pr	91.06
PRK07058	396	acetate kinase; Provisional	90.92
TIGR03725	202	bact_YeaZ universal bacterial protein YeaZ. This f	90.75
smart00268	373	ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarki	90.75
PF14639	150	YqgF: Holliday-junction resolvase-like of SPT6 ; P	90.69
COG0816	141	Predicted endonuclease involved in recombination (	90.21
COG0849	418	ftsA Cell division ATPase FtsA [Cell division and	89.95
COG0282	396	ackA Acetate kinase [Energy production and convers	89.65
TIGR00250	130	RNAse_H_YqgF RNAse H-fold protein YqgF. This prote	89.31
cd00012	371	ACTIN Actin; An ubiquitous protein involved in the	88.83
PTZ00186	657	heat shock 70 kDa precursor protein; Provisional	88.78
PF14450	120	FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B	88.57
PRK10719	475	eutA reactivating factor for ethanolamine ammonia	88.18
COG4820	277	EutJ Ethanolamine utilization protein, possible ch	88.08
TIGR03723	314	bact_gcp putative glycoprotease GCP. This model re	87.76
PRK11031	496	guanosine pentaphosphate phosphohydrolase; Provisi	87.24
PF03309	206	Pan_kinase: Type III pantothenate kinase; InterPro	87.2
PF13941	457	MutL: MutL protein	86.9
PF07318	343	DUF1464: Protein of unknown function (DUF1464); In	86.55
PF06723	326	MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Ba	85.11
PRK13929	335	rod-share determining protein MreBH; Provisional	84.49
PF00814	268	Peptidase_M22: Glycoprotease family; InterPro: IPR	84.37
PLN02920	398	pantothenate kinase 1	84.02
COG1214	220	Inactive homolog of metal-dependent proteases, put	83.51
COG5146	342	PanK Pantothenate kinase, acetyl-CoA regulated [Co	83.13
COG0533	342	QRI7 Metal-dependent proteases with possible chape	82.98
TIGR01175	348	pilM type IV pilus assembly protein PilM. This pro	82.68
COG4972	354	PilM Tfp pilus assembly protein, ATPase PilM [Cell	82.2
PTZ00452	375	actin; Provisional	80.83
PLN02902	876	pantothenate kinase	80.23

>KOG1794 consensus N-Acetylglucosamine kinase [Carbohydrate transport and metabolism]

Probab=100.00  E-value=4.7e-40  Score=291.01  Aligned_cols=277  Identities=29%  Similarity=0.417  Sum_probs=251.8

Q ss_pred             CCcEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccc-cceE
Q 020972           20 GREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSA-VRAV   98 (319)
Q Consensus        20 m~~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~-i~~I   98 (319)
                      |+.+|.|||.|.|.++++++|.         +++++.+....++|....+.+.+.++|.+.|+++..+++.++.. +.++
T Consensus         1 ~~~~y~GvEGgaT~s~~Vivd~---------~~~~~~~a~~~~Tnh~~ig~~~~~~rie~~i~~A~~k~g~d~~~~lr~l   71 (336)
T KOG1794|consen    1 LKDFYGGVEGGATCSRLVIVDE---------DGTILGRAVGGGTNHWLIGSTTCASRIEDMIREAKEKAGWDKKGPLRSL   71 (336)
T ss_pred             CCceeEeecCCcceeEEEEECC---------CCCEeeEeeccccccccCCchHHHHHHHHHHHHHHhhcCCCccCcccee
Confidence            4579999999999999999999         99999999988888877788899999999999999999998876 8999


Q ss_pred             EEeecCCCCchhHHHHHHHHHhhCCCCc-eEEEeCcHHHHHHhhcCCCCCeEEEEECccceeEeEecCCcEEeeCCCCCc
Q 020972           99 CLAVSGVNHPTDQQRILNWLRDIFPGNV-RLYVHNDALAALASGTMGKLHGCVLIAGTGTIAYGFTEDGRDARAAGAGPI  177 (319)
Q Consensus        99 gig~pG~~~~~~~~~l~~~L~~~~~~~~-pv~v~NDa~aa~~g~~~g~~~~v~v~~GTGigg~gii~dG~~~raGg~Ghl  177 (319)
                      |++++|.+++..+..|.+++++.||... .++|.||+..+++++..|..+++++++|||+.|..++.||+.-++|+||||
T Consensus        72 gL~lSg~d~e~~~~~lv~~~R~~fps~ae~~~v~sDa~~sl~a~t~g~~~GiVLiaGTgs~crl~~~DGs~~~~ggwg~~  151 (336)
T KOG1794|consen   72 GLGLSGTDQEDKNRKLVTEFRDKFPSVAENFYVTSDADGSLAAATPGGEGGIVLIAGTGSNCRLVNPDGSEKGAGGWGHM  151 (336)
T ss_pred             eeecccCCchhHHHHHHHHHHHhccchhheeeeehhHHHHHhhcCCCCCCcEEEEecCCceeEEECCCCCccCCCCCCCc
Confidence            9999999999999999999999998523 499999999988877777889999999999999999999999999999999


Q ss_pred             cCCcCChHHHHHHHHHHHHHHhcCCCCC----chhHHHHHHHcCCCChhhHHHHhccCCChHHHhchhHHHHHHHHcCCH
Q 020972          178 LGDWGSGYGIAAQALTAVIRAYDGRGPD----TMLTSNILSTLELSSPDELIGWTYVDPSWARIAALVPVVVSCAEAGDE  253 (319)
Q Consensus       178 ~gd~Gsa~~iG~~~~~~~~~~~dg~~~~----~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~v~~~A~~GD~  253 (319)
                      +||+||||||++++++.+++..||..+.    ..+.+.+.+++++.+...++.+.|+++++.++|.+++.+.+.+++|||
T Consensus       152 iGd~GSaywia~~Avq~vfda~dg~e~~~~~i~~v~~tif~~~~l~d~l~ml~~~Ys~f~k~riA~f~~kla~~ae~Gd~  231 (336)
T KOG1794|consen  152 IGDGGSAYWIARQAVQMVFDAEDGFENMMDKIKDVKQTIFKHFNLRDRLQMLEHLYSDFDKHRIALFTEKLAEHAEIGDP  231 (336)
T ss_pred             cCCCcchhhhhhhhhhheeehhcCcccccchHHHHHHHHHHHcCCCCHHHHHHHHHhcchHHHHHHHHHHHHhhhhccCH
Confidence            9999999999999999999888988765    667788999999999999999999988888999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhcccccccEEEEcchhhhcHHHHHHH
Q 020972          254 VANKILQDSVEELALSVKAVVQRLSLSGEGVTYTKILKEKVPLLMENILFLLSWLVVFLK  313 (319)
Q Consensus       254 ~A~~il~~a~~~Lg~~la~li~~l~~~~~~~~~~~~~~~~~~ivl~Gg~~~~~~~~~~~~  313 (319)
                      ++.+||++|+..||+.+.+++..+.|.+-.+       ...+||+.|||| +|||+|-..
T Consensus       232 ~~~~ifr~Ag~~Lg~~V~aVl~~l~~~~k~g-------~~l~Iv~vG~V~-~Sw~~l~~G  283 (336)
T KOG1794|consen  232 LSAEIFRNAGETLGRHVVAVLPQLPPTLKKG-------KTLPIVCVGGVF-DSWDLLQEG  283 (336)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCchhccc-------CcceEEEEcchh-hHHHHHHHH
Confidence            9999999999999999999999999854210       156899999999 999987544

>COG2971 Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism]

Probab=100.00  E-value=2.3e-39  Score=291.64  Aligned_cols=268  Identities=30%  Similarity=0.427  Sum_probs=227.5

Q ss_pred             CCcEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceEE
Q 020972           20 GREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVC   99 (319)
Q Consensus        20 m~~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Ig   99 (319)
                      |+.|+||||.|||||++++.|.         +|+++.+.+.+|.|....+.+..+.+|.++|.+++.+++.++++|..+.
T Consensus         3 ~~~~~lGVDGGGTkt~a~l~~~---------~g~vlg~g~sGpAN~~~~~~e~A~~ni~~ai~~A~~~aG~~~~~i~~~~   73 (301)
T COG2971           3 PMPYFLGVDGGGTKTRAVLADE---------DGNVLGRGKSGPANIQLVGKEEAVRNIKDAIREALDEAGLKPDEIAAIV   73 (301)
T ss_pred             CccEEEEEccCCcceEEEEEcC---------CCcEEEEeccCCceecccchHHHHHHHHHHHHHHHHhcCCCHHHhCcee
Confidence            3469999999999999999998         9999999999999998666699999999999999999999999888887


Q ss_pred             EeecCCCCchhHHHHHHHHHhhCCCCceEEEeCcHHHHHHhhcCCCCCeEEEEECccceeEeEecCCcEEeeCCCCCccC
Q 020972          100 LAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTMGKLHGCVLIAGTGTIAYGFTEDGRDARAAGAGPILG  179 (319)
Q Consensus       100 ig~pG~~~~~~~~~l~~~L~~~~~~~~pv~v~NDa~aa~~g~~~g~~~~v~v~~GTGigg~gii~dG~~~raGg~Ghl~g  179 (319)
                      .|+.+.....+..  ...++..++..-.+.|+||+..|+.++. +.++++++++|||+++++. .+|+..|.|||||++|
T Consensus        74 agla~ag~~~~~~--~~~~~~~l~~a~~v~v~~Dg~iAl~ga~-~~~~Gii~i~GTGSi~~~~-~gg~~~r~GG~Gf~Ig  149 (301)
T COG2971          74 AGLALAGANVEEA--REELERLLPFAGKVDVENDGLIALRGAL-GDDDGIIVIAGTGSIGYGR-KGGRRERVGGWGFPIG  149 (301)
T ss_pred             eeeeccCcchhHH--HHHHHHhcCccceEEEecChHHHHhhcc-CCCCCEEEEecCCeEEEEE-eCCeeEEecCcCcccc
Confidence            7777776543221  1122333443138999999999998764 4579999999999999987 7899999999999999


Q ss_pred             CcCChHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHcCCCChhhHHHHhccCC-ChHHHhchhHHHHHHHHcCCHHHHHH
Q 020972          180 DWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDP-SWARIAALVPVVVSCAEAGDEVANKI  258 (319)
Q Consensus       180 d~Gsa~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~a~~~~~v~~~A~~GD~~A~~i  258 (319)
                      |+||++|||+.++++.++.+||+.+.++|.+.++.+|+. +.++++++.|+.. ....++++++.|+++|++||+.|++|
T Consensus       150 DegSga~ig~~~L~~~lra~DG~~~~t~L~d~v~~~f~~-d~edlv~~~y~a~~~~~~ia~lap~V~~~A~~GD~~A~~I  228 (301)
T COG2971         150 DEGSGAWIGREALQEALRAFDGRREATPLTDAVMAEFNL-DPEDLVAFIYKAGPGDKKIAALAPAVFEAARKGDPVAIRI  228 (301)
T ss_pred             ccchHHHHHHHHHHHHHHHhcCCccCChHHHHHHHHhCC-CHHHHHHHHHhcCCchHHHHHhhHHHHHHHHcCCHHHHHH
Confidence            999999999999999999999999999999999999996 8999999998643 44568999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcccCCCcchhhcccccccEEEEcchhhhcHHHHHHHHhh
Q 020972          259 LQDSVEELALSVKAVVQRLSLSGEGVTYTKILKEKVPLLMENILFLLSWLVVFLKLIE  316 (319)
Q Consensus       259 l~~a~~~Lg~~la~li~~l~~~~~~~~~~~~~~~~~~ivl~Gg~~~~~~~~~~~~~~~  316 (319)
                      +++++.++...+..+. .++.             +.++.+-||++ ++.+.|+..+++
T Consensus       229 l~~aa~~i~~~~~~l~-~~~g-------------~~~l~l~GG~~-~~~~~~~~~~~~  271 (301)
T COG2971         229 LKEAAAYIATLLEALS-IFNG-------------SEKLSLLGGLA-PSYPYYLSLFRR  271 (301)
T ss_pred             HHHHHHHHHHHHHHHh-cccC-------------CceEEEecccc-ccchhhHHHHHH
Confidence            9999988888877765 3332             46899999999 676666665554

>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis

Probab=100.00  E-value=5.7e-33  Score=254.31  Aligned_cols=237  Identities=40%  Similarity=0.562  Sum_probs=199.3

Q ss_pred             EEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceEEEeecC
Q 020972           25 LGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVSG  104 (319)
Q Consensus        25 lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Igig~pG  104 (319)
                      ||||+|||||+++++|.         +|+++.+.+..+.|+...+.+.++++|.+++++++++.+.+..++..+++|++|
T Consensus         1 lGIDgGgTkt~~vl~d~---------~g~il~~~~~~~~n~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~i~~~~~g~aG   71 (271)
T PF01869_consen    1 LGIDGGGTKTKAVLVDE---------NGNILGRGKGGGANYNSVGFEEAMENIKEAIEEALSQAGLSPDDIAAICIGAAG   71 (271)
T ss_dssp             EEEEECSSEEEEEEEET---------TSEEEEEEEES-TTHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCCCEEEEEEEE
T ss_pred             CEEeeChheeeeEEEeC---------CCCEEEEEEeCCCCCCCCCcchhhhHHHHHHHHHHHHcCCCccccceeeeeEee
Confidence            79999999999999999         999999998888887656788999999999999999999988889999999999


Q ss_pred             CCCchhHHHHHHHHHhhCCCCceEEEeCcHHHHHHhhcCCCCCeEEEEECccceeEeEecCCcEEeeCCCCCccCCcCCh
Q 020972          105 VNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTMGKLHGCVLIAGTGTIAYGFTEDGRDARAAGAGPILGDWGSG  184 (319)
Q Consensus       105 ~~~~~~~~~l~~~L~~~~~~~~pv~v~NDa~aa~~g~~~g~~~~v~v~~GTGigg~gii~dG~~~raGg~Ghl~gd~Gsa  184 (319)
                      +..+.....+...+..     .++.+.||+..++++...  +++++++.|||+.++++..+|+..|.|+|||++||+||+
T Consensus        72 ~~~~~~~~~~~~~~~~-----~~v~~~~Da~~al~~~~~--~~giv~I~GTGS~~~~~~~~g~~~r~gG~G~~~gD~GSg  144 (271)
T PF01869_consen   72 YGRAGDEQEFQEEIVR-----SEVIVVNDAAIALYGATA--EDGIVVIAGTGSIAYGRDRDGRVIRFGGWGHCLGDEGSG  144 (271)
T ss_dssp             EEETTTTTHHHHHHHH-----HEEEEEEHHHHHHHHHST--SSEEEEEESSSEEEEEEETTSEEEEEEESCTTTTTTTSH
T ss_pred             ecCcccccchhhcceE-----EEEEEEHHHHHHhCCCCC--CcEEEEEcCCCceEEEEEcCCcEEEeCCCCCCcCCCCcH
Confidence            8765443334333321     279999999988876554  689999999999999887799999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCchhHHHHHHHcCCCChhhHHHHhccCCChHHHhchhHHHHHHHHcCCHHHHHHHHHHHH
Q 020972          185 YGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWARIAALVPVVVSCAEAGDEVANKILQDSVE  264 (319)
Q Consensus       185 ~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~v~~~A~~GD~~A~~il~~a~~  264 (319)
                      +|||+++++..++..|++.+.+.        +            .....+.+++.+++.+++++++||+.|.+|++++++
T Consensus       145 ~~ig~~~L~~~~~~~d~~~~~~~--------~------------~~~~~~~~~A~fa~~v~~~a~~gd~~a~~Il~~a~~  204 (271)
T PF01869_consen  145 YWIGRRALRAVLRELDGRAEPTP--------Y------------AKPASNARIAVFAPTVFEAAQQGDEVARDILAEAAD  204 (271)
T ss_dssp             HHHHHHHHHHHHHHHTTSSTTSH--------H------------HHTT-HHHHHCTHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHhHHHHHhcCccccCc--------c------------cCCCChhheehhhHHHHHHHHcCCchHHHHHHHHHH
Confidence            99999999999999988776553        0            001234578889999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcccCCCcchhhcccccccEEEEcchhhhcHHHH
Q 020972          265 ELALSVKAVVQRLSLSGEGVTYTKILKEKVPLLMENILFLLSWLVV  310 (319)
Q Consensus       265 ~Lg~~la~li~~l~~~~~~~~~~~~~~~~~~ivl~Gg~~~~~~~~~  310 (319)
                      +|++.+..++..+++            .+.++++.||++ +++.++
T Consensus       205 ~la~~i~~~~~~~~~------------~~~~v~l~GGv~-~~~~~~  237 (271)
T PF01869_consen  205 ELAELIKAVLKRLGP------------EKEPVVLSGGVF-KNSPLV  237 (271)
T ss_dssp             HHHHHHHHHHHTCTC------------CCCSEEEESGGG-GCHHHH
T ss_pred             HHHHHHHHHHHhcCC------------CCCeEEEECCcc-CchHHH
Confidence            999999999998887            223599999999 776543

The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.

>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]

Probab=100.00  E-value=1.4e-33  Score=263.45  Aligned_cols=252  Identities=18%  Similarity=0.158  Sum_probs=190.3

Q ss_pred             cCCCcEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccce
Q 020972           18 SGGREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRA   97 (319)
Q Consensus        18 ~~m~~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~   97 (319)
                      +|++.+++|||+|+|+++++++|.         +|+++.+.+.++...  ...+.+++.|.+.+++++.+.. ...++.+
T Consensus         2 ~~~~~~~lgidIggt~i~~~l~d~---------~g~~l~~~~~~~~~~--~~~~~~~~~i~~~i~~~~~~~~-~~~~~iG   69 (314)
T COG1940           2 NPEAMTVLGIDIGGTKIKVALVDL---------DGEILLRERIPTPTP--DPEEAILEAILALVAELLKQAQ-GRVAIIG   69 (314)
T ss_pred             CccCcEEEEEEecCCEEEEEEECC---------CCcEEEEEEEecCCC--CchhHHHHHHHHHHHHHHHhcC-CcCceEE
Confidence            466789999999999999999999         999998888755432  2446889999999999998775 3345666


Q ss_pred             EEEeecCCCCchh------------HHHHHHHHHhhCCCCceEEEeCcHHHHHHhhc-----CCCCCeEEEEECccceeE
Q 020972           98 VCLAVSGVNHPTD------------QQRILNWLRDIFPGNVRLYVHNDALAALASGT-----MGKLHGCVLIAGTGTIAY  160 (319)
Q Consensus        98 Igig~pG~~~~~~------------~~~l~~~L~~~~~~~~pv~v~NDa~aa~~g~~-----~g~~~~v~v~~GTGigg~  160 (319)
                      ||++.||.++...            ..+|++.|++.++  +||+|+||+|+++++|.     ++.++++|+++|||+|+ 
T Consensus        70 Igi~~pg~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~Pv~veNDan~aalaE~~~g~~~~~~~~~~i~~gtGIG~-  146 (314)
T COG1940          70 IGIPGPGDVDNGTVIVPAPNLGWWNGVDLAEELEARLG--LPVFVENDANAAALAEAWFGAGRGIDDVVYITLGTGIGG-  146 (314)
T ss_pred             EEeccceeccCCcEEeecCCCCccccccHHHHHHHHHC--CCEEEecHHHHHHHHHHHhCCCCCCCCEEEEEEccceeE-
Confidence            6666666655421            2579999999998  99999999999999974     24578999999999955 


Q ss_pred             eEecCCcEEeeCCCCCccCCcCChHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHcCCCChhhHHHHhccCCChHHHhch
Q 020972          161 GFTEDGRDARAAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWARIAAL  240 (319)
Q Consensus       161 gii~dG~~~raGg~Ghl~gd~Gsa~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~  240 (319)
                      |++.||+++|        |..|.++|+||+.++     .++. |.|+...|++.+.   +...+.++.+...........
T Consensus       147 giv~~g~l~~--------G~~g~age~Gh~~v~-----~~g~-c~cG~~GclE~~a---s~~al~~~~~~~~~~~~~~~~  209 (314)
T COG1940         147 GIIVNGKLLR--------GANGNAGEIGHMVVD-----PDGE-CGCGRRGCLETYA---SGRAILRRAAEALESEAGELT  209 (314)
T ss_pred             EEEECCEEee--------cCCCccccccceEEC-----CCCc-cCCCCCCchHHhc---cHHHHHHHHHhhccccccCcC
Confidence            8999999999        666666666666553     2333 4555555555554   334454442111000000023


Q ss_pred             hHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhcccccccEEEEc-chhhhcHHHHHHHHhh
Q 020972          241 VPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEGVTYTKILKEKVPLLMEN-ILFLLSWLVVFLKLIE  316 (319)
Q Consensus       241 ~~~v~~~A~~GD~~A~~il~~a~~~Lg~~la~li~~l~~~~~~~~~~~~~~~~~~ivl~G-g~~~~~~~~~~~~~~~  316 (319)
                      .+.+++++++||+.|.+++++++++|+.++++++++|||              +.||++| |+. ...+.+++.+.+
T Consensus       210 ~~~i~~~a~~gd~~a~~~~~~~~~~la~~ianl~~~~~P--------------~~IvigG~g~~-~~~~~~~~~l~~  271 (314)
T COG1940         210 AKDIFELAAAGDPLAKEVIERAADYLARGLANLINLLDP--------------EVIVIGGGGVS-ALGDLLLPRLRK  271 (314)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhcCC--------------CeEEEECcccc-cchhHHHHHHHH
Confidence            688999999999999999999999999999999999998              4789998 666 788888888765

>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase)

Probab=100.00  E-value=2.2e-33  Score=262.44  Aligned_cols=245  Identities=16%  Similarity=0.116  Sum_probs=191.9

Q ss_pred             EEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceEEEeecC
Q 020972           25 LGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVSG  104 (319)
Q Consensus        25 lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Igig~pG  104 (319)
                      ||||+|+|+++++++|.         +|+++.+.+.+. .   .+++++++.+.+.+++++++.+....++.+|||++||
T Consensus         1 lgidig~t~~~~~l~d~---------~g~i~~~~~~~~-~---~~~~~~~~~l~~~i~~~~~~~~~~~~~i~gIgva~pG   67 (318)
T TIGR00744         1 IGVDIGGTTIKLGVVDE---------EGNILSKWKVPT-D---TTPETIVDAIASAVDSFIQHIAKVGHEIVAIGIGAPG   67 (318)
T ss_pred             CEEEeCCCEEEEEEECC---------CCCEEEEEEeCC-C---CCHHHHHHHHHHHHHHHHHhcCCCccceEEEEEeccc
Confidence            68999999999999999         999998877643 2   3678899999999999999887776789999999999


Q ss_pred             CCCchh------------HHHHHHHHHhhCCCCceEEEeCcHHHHHHhhc-----CCCCCeEEEEECccceeEeEecCCc
Q 020972          105 VNHPTD------------QQRILNWLRDIFPGNVRLYVHNDALAALASGT-----MGKLHGCVLIAGTGTIAYGFTEDGR  167 (319)
Q Consensus       105 ~~~~~~------------~~~l~~~L~~~~~~~~pv~v~NDa~aa~~g~~-----~g~~~~v~v~~GTGigg~gii~dG~  167 (319)
                      +++++.            ..+|++.|+++|+  +||+++||++++++++.     .+.++++|+++|||++ +|++.||+
T Consensus        68 ~vd~~~g~~~~~~~~~w~~~~l~~~l~~~~~--~pv~v~NDa~~~alaE~~~g~~~~~~~~~~v~igtGiG-~giv~~G~  144 (318)
T TIGR00744        68 PVNRQRGTVYFAVNLDWKQEPLKEKVEARVG--LPVVVENDANAAALGEYKKGAGKGARDVICITLGTGLG-GGIIINGE  144 (318)
T ss_pred             cccCCCCEEEecCCCCCCCCCHHHHHHHHHC--CCEEEechHHHHHHHHHHhcccCCCCcEEEEEeCCccE-EEEEECCE
Confidence            987532            3579999999998  99999999999999874     3567999999999995 57999999


Q ss_pred             EEeeCCCCCccCCcCChHHHHHHHHHHHHHHhcC-CCCCchhHHHHHHHcCCCChhhHHHHhc---cCCCh-HH------
Q 020972          168 DARAAGAGPILGDWGSGYGIAAQALTAVIRAYDG-RGPDTMLTSNILSTLELSSPDELIGWTY---VDPSW-AR------  236 (319)
Q Consensus       168 ~~raGg~Ghl~gd~Gsa~~iG~~~~~~~~~~~dg-~~~~~~l~~~~~~~~~~~~~~~l~~~~~---~~~~~-~~------  236 (319)
                      +++        |++|+++|+||..+.     .++ ..|.|+-..|++...   +...+.+...   ..... ..      
T Consensus       145 ~~~--------G~~g~agEiGh~~v~-----~~g~~~C~cG~~gclE~~~---s~~al~~~~~~~~~~~~~~~~~~~~~~  208 (318)
T TIGR00744       145 IRH--------GHNGVGAEIGHIRMV-----PDGRLLCNCGKQGCIETYA---SATGLVRYAKRANAKPERAEVLLALGD  208 (318)
T ss_pred             Eee--------cCCCCCcccCceEeC-----CCCCcccCCCCcchHHHHh---CHHHHHHHHHHHhccccccchhhcccc
Confidence            998        777778888876552     344 445555555555544   3334433221   10000 00      


Q ss_pred             -HhchhHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhcccccccEEEEcchhhhcHHHHHHHHh
Q 020972          237 -IAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEGVTYTKILKEKVPLLMENILFLLSWLVVFLKLI  315 (319)
Q Consensus       237 -~a~~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~la~li~~l~~~~~~~~~~~~~~~~~~ivl~Gg~~~~~~~~~~~~~~  315 (319)
                       .....+.+++++++||+.|.+++++++++|+.+++++++.|||              +.|||+|+++ ...+.|++.+.
T Consensus       209 ~~~~~~~~i~~~~~~gD~~a~~i~~~~~~~L~~~i~~~~~~~dP--------------~~IvlgG~~~-~~~~~~~~~i~  273 (318)
T TIGR00744       209 GDGISAKHVFVAARQGDPVAVDSYREVARWAGAGLADLASLFNP--------------SAIVLGGGLS-DAGDLLLDPIR  273 (318)
T ss_pred             cCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhCC--------------CEEEECChhh-hCcHHHHHHHH
Confidence             0123678999999999999999999999999999999999998              4799999988 67788888776


Q ss_pred             h
Q 020972          316 E  316 (319)
Q Consensus       316 ~  316 (319)
                      +
T Consensus       274 ~  274 (318)
T TIGR00744       274 K  274 (318)
T ss_pred             H
Confidence            5

This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.

>PRK13310 N-acetyl-D-glucosamine kinase; Provisional

Probab=100.00  E-value=8.1e-33  Score=257.17  Aligned_cols=245  Identities=16%  Similarity=0.083  Sum_probs=183.1

Q ss_pred             EEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceEEEee
Q 020972           23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV  102 (319)
Q Consensus        23 ~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Igig~  102 (319)
                      +++|||+|+|+++++++|.         +|+++.+.+.+.. .  .+++++++.+.+.++++..+.+    .+.+|||++
T Consensus         1 ~~lgidig~t~i~~~l~d~---------~g~i~~~~~~~~~-~--~~~~~~~~~i~~~i~~~~~~~~----~~~~igia~   64 (303)
T PRK13310          1 MYYGFDIGGTKIELGVFNE---------KLELQWEERVPTP-R--DSYDAFLDAVCELVAEADQRFG----CKGSVGIGI   64 (303)
T ss_pred             CeEEEEeCCCcEEEEEECC---------CCcEEEEEEecCC-C--cCHHHHHHHHHHHHHHHHhhcC----CcceEEEeC
Confidence            4799999999999999999         9999988876542 2  4688888999888888765432    345899999


Q ss_pred             cCCCCchh------------HHHHHHHHHhhCCCCceEEEeCcHHHHHHhhc-----CCCCCeEEEEECccceeEeEecC
Q 020972          103 SGVNHPTD------------QQRILNWLRDIFPGNVRLYVHNDALAALASGT-----MGKLHGCVLIAGTGTIAYGFTED  165 (319)
Q Consensus       103 pG~~~~~~------------~~~l~~~L~~~~~~~~pv~v~NDa~aa~~g~~-----~g~~~~v~v~~GTGigg~gii~d  165 (319)
                      ||+++++.            +++|+++|+++|+  +||+++||+|+++++|.     ++.++++|+++|||+| +|++.|
T Consensus        65 pG~vd~~~g~~~~~~~~~w~~~~l~~~l~~~~~--~pV~ieNDa~aaalaE~~~g~~~~~~~~~~l~~gtGiG-~giv~~  141 (303)
T PRK13310         65 PGMPETEDGTLYAANVPAASGKPLRADLSARLG--RDVRLDNDANCFALSEAWDDEFTQYPLVMGLILGTGVG-GGLVFN  141 (303)
T ss_pred             CCcccCCCCEEeccCcccccCCcHHHHHHHHHC--CCeEEeccHhHHHHHHhhhccccCCCcEEEEEecCceE-EEEEEC
Confidence            99987532            2589999999997  99999999999999873     2467999999999995 589999


Q ss_pred             CcEEeeCCCCCccCCcCChHHHHHHHHHHHHHHhcC-----CCCCchhHHHHHHHcCCCChhhHHHHhccCCChHHHhch
Q 020972          166 GRDARAAGAGPILGDWGSGYGIAAQALTAVIRAYDG-----RGPDTMLTSNILSTLELSSPDELIGWTYVDPSWARIAAL  240 (319)
Q Consensus       166 G~~~raGg~Ghl~gd~Gsa~~iG~~~~~~~~~~~dg-----~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~  240 (319)
                      |++++        |..|.++|+||..+........+     ..|.|+-..|++...+   ...+.+.+..... ..  ..
T Consensus       142 G~l~~--------G~~g~aGEiGH~~v~~~~~~~~g~~~~~~~C~CG~~gclE~~~S---~~al~~~~~~~~~-~~--~~  207 (303)
T PRK13310        142 GKPIS--------GRSYITGEFGHMRLPVDALTLLGWDAPLRRCGCGQKGCIENYLS---GRGFEWLYQHYYG-EP--LQ  207 (303)
T ss_pred             CEEee--------CCCCccccccceeecccccccccccCCCccCCCCCcchHHHhhc---HHHHHHHHHHhcc-CC--CC
Confidence            99998        67777777777655311000001     2445554555555543   3334332211000 00  13


Q ss_pred             hHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhcccccccEEEEcchhhhcHHHHHHHHhh
Q 020972          241 VPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEGVTYTKILKEKVPLLMENILFLLSWLVVFLKLIE  316 (319)
Q Consensus       241 ~~~v~~~A~~GD~~A~~il~~a~~~Lg~~la~li~~l~~~~~~~~~~~~~~~~~~ivl~Gg~~~~~~~~~~~~~~~  316 (319)
                      .+.+++++++||+.|.+++++++++||.++++++++|||              +.|||+|++. . .+.|++.+.|
T Consensus       208 ~~~l~~~~~~gd~~a~~~~~~~~~~la~~l~n~~~~ldP--------------~~IvlgG~~~-~-~~~~~~~l~~  267 (303)
T PRK13310        208 APEIIALYYQGDEQAVAHVERYLDLLAICLGNILTIVDP--------------HLVVLGGGLS-N-FDAIYEQLPK  267 (303)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHcCC--------------CEEEECCccc-C-hHHHHHHHHH
Confidence            577999999999999999999999999999999999998              4789988887 5 5777777665

>PRK09557 fructokinase; Reviewed

Probab=100.00  E-value=3.2e-32  Score=252.93  Aligned_cols=245  Identities=18%  Similarity=0.098  Sum_probs=182.4

Q ss_pred             EEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceEEEee
Q 020972           23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV  102 (319)
Q Consensus        23 ~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Igig~  102 (319)
                      |+||||+|+|+++++++|.         +|+++.+.+.++. .  .+++++++.+.+.++++..+.+    ++.+|||++
T Consensus         1 ~~lgidig~t~~~~~l~d~---------~g~i~~~~~~~~~-~--~~~~~~~~~i~~~i~~~~~~~~----~~~gIgi~~   64 (301)
T PRK09557          1 MRIGIDLGGTKIEVIALDD---------AGEELFRKRLPTP-R--DDYQQTIEAIATLVDMAEQATG----QRGTVGVGI   64 (301)
T ss_pred             CEEEEEECCCcEEEEEECC---------CCCEEEEEEecCC-C--CCHHHHHHHHHHHHHHHHhhcC----CceEEEecC
Confidence            5899999999999999999         9999988876542 2  3678888888888888765432    467999999


Q ss_pred             cCCCCchh------------HHHHHHHHHhhCCCCceEEEeCcHHHHHHhhc-----CCCCCeEEEEECccceeEeEecC
Q 020972          103 SGVNHPTD------------QQRILNWLRDIFPGNVRLYVHNDALAALASGT-----MGKLHGCVLIAGTGTIAYGFTED  165 (319)
Q Consensus       103 pG~~~~~~------------~~~l~~~L~~~~~~~~pv~v~NDa~aa~~g~~-----~g~~~~v~v~~GTGigg~gii~d  165 (319)
                      ||+++++.            ..+|++.|+++|+  .||.++||+++++++|.     ++.++++|+++|||+| +|++.|
T Consensus        65 pG~vd~~~g~i~~~~~~~~~~~~l~~~l~~~~~--~pv~~~NDa~aaA~aE~~~g~~~~~~~~~~l~igtGiG-~giv~~  141 (301)
T PRK09557         65 PGSISPYTGLVKNANSTWLNGQPLDKDLSARLN--REVRLANDANCLAVSEAVDGAAAGKQTVFAVIIGTGCG-AGVAIN  141 (301)
T ss_pred             cccCcCCCCeEEecCCccccCCCHHHHHHHHHC--CCEEEccchhHHHHHHHHhcccCCCCcEEEEEEccceE-EEEEEC
Confidence            99987431            3589999999997  89999999999999873     2457899999999995 579999


Q ss_pred             CcEEeeCCCCCccCCcCChHHHHHHHHHHHHH-Hh---cCCCCCchhHHHHHHHcCCCChhhHHHHhccCCChHHHhchh
Q 020972          166 GRDARAAGAGPILGDWGSGYGIAAQALTAVIR-AY---DGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWARIAALV  241 (319)
Q Consensus       166 G~~~raGg~Ghl~gd~Gsa~~iG~~~~~~~~~-~~---dg~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~  241 (319)
                      |++++        |..|.++|+||..+..... ..   ++..|.|+...|++...   +...+.+.+..... ..  ...
T Consensus       142 G~l~~--------G~~g~aGEiGH~~v~~~~~~~~~~~~g~~c~cG~~GclE~~~---S~~al~~~~~~~~~-~~--~~~  207 (301)
T PRK09557        142 GRVHI--------GGNGIAGEWGHNPLPWMDEDELRYRNEVPCYCGKQGCIETFI---SGTGFATDYRRLSG-KA--LKG  207 (301)
T ss_pred             CEEEe--------cCCCCCcccCceecccccccccccCCCCcCCCCCCCEEeEEE---cHHHHHHHHHHhcc-CC--CCH
Confidence            99998        6666777777765521000 00   34445555444444443   33344443221000 00  125


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhcccccccEEEEcchhhhcHHHHHHHHhh
Q 020972          242 PVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEGVTYTKILKEKVPLLMENILFLLSWLVVFLKLIE  316 (319)
Q Consensus       242 ~~v~~~A~~GD~~A~~il~~a~~~Lg~~la~li~~l~~~~~~~~~~~~~~~~~~ivl~Gg~~~~~~~~~~~~~~~  316 (319)
                      +.+++++++||+.|.+++++++++||.+++++++.|||              +.|||+|+++ +. +.+++.+.+
T Consensus       208 ~~l~~~~~~gd~~a~~~l~~~~~~La~~l~~l~~~ldP--------------~~IvlgG~~~-~~-~~~~~~l~~  266 (301)
T PRK09557        208 SEIIRLVEEGDPVAELAFRRYEDRLAKSLAHVINILDP--------------DVIVLGGGMS-NV-DRLYPTLPA  266 (301)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhCC--------------CEEEEcCccc-ch-HHHHHHHHH
Confidence            77999999999999999999999999999999999998              4799999988 44 566665543

>PRK05082 N-acetylmannosamine kinase; Provisional

Probab=99.97  E-value=1e-30  Score=241.65  Aligned_cols=236  Identities=15%  Similarity=0.060  Sum_probs=178.2

Q ss_pred             EEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceEEEeec
Q 020972           24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVS  103 (319)
Q Consensus        24 ~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Igig~p  103 (319)
                      ++|||+|+|+++++++|.         +|+++.+.+.+.. .. .+++.+++.+.+.++++..       ++.+|||++|
T Consensus         3 ~lgvdig~~~i~~~l~dl---------~g~i~~~~~~~~~-~~-~~~~~~~~~i~~~i~~~~~-------~~~~igi~~p   64 (291)
T PRK05082          3 TLAIDIGGTKIAAALVGE---------DGQIRQRRQIPTP-AS-QTPEALRQALSALVSPLQA-------QADRVAVAST   64 (291)
T ss_pred             EEEEEECCCEEEEEEEcC---------CCcEEEEEEecCC-CC-CCHHHHHHHHHHHHHHhhh-------cCcEEEEeCc
Confidence            799999999999999999         9999988776542 21 3577788888887776642       4678999999


Q ss_pred             CCCCch-------------hHHHHHHHHHhhCCCCceEEEeCcHHHHHHhhc----CCCCCeEEEEECccceeEeEecCC
Q 020972          104 GVNHPT-------------DQQRILNWLRDIFPGNVRLYVHNDALAALASGT----MGKLHGCVLIAGTGTIAYGFTEDG  166 (319)
Q Consensus       104 G~~~~~-------------~~~~l~~~L~~~~~~~~pv~v~NDa~aa~~g~~----~g~~~~v~v~~GTGigg~gii~dG  166 (319)
                      |+++..             .+.+|++.|+++|+  +||+++||+|+++++|.    .+.++++|+.+|||+| +|++.||
T Consensus        65 G~vd~~~~~~~~~~~~~~w~~~~l~~~l~~~~~--~pv~v~NDa~a~a~aE~~~g~~~~~~~~~l~ig~GiG-~giv~~G  141 (291)
T PRK05082         65 GIINDGILTALNPHNLGGLLHFPLVQTLEQLTD--LPTIALNDAQAAAWAEYQALPDDIRNMVFITVSTGVG-GGIVLNG  141 (291)
T ss_pred             ccccCCeeEEecCCCCccccCCChHHHHHHHhC--CCEEEECcHHHHHHHHHHhcCCCCCCEEEEEECCCcc-eEEEECC
Confidence            987531             13479999999997  89999999999999874    2457899999999995 4799999


Q ss_pred             cEEeeCCCCCccCCcCChHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHcCCCChhhHHHHhccCCChHHHhchhHHHHH
Q 020972          167 RDARAAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWARIAALVPVVVS  246 (319)
Q Consensus       167 ~~~raGg~Ghl~gd~Gsa~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~v~~  246 (319)
                      ++++        |.+|.++|+||..++     .++..|.|+...|++...   +...+.+......  .  ....+.+++
T Consensus       142 ~~~~--------G~~g~AGEiGh~~v~-----~~g~~c~CG~~GclE~~~---S~~al~~~~~~~~--~--~~~~~~i~~  201 (291)
T PRK05082        142 KLLT--------GPGGLAGHIGHTLAD-----PHGPVCGCGRRGCVEAIA---SGRAIAAAAQGWL--A--GCDAKTIFE  201 (291)
T ss_pred             EEee--------CCCCccccccceEec-----CCCCCCCCCCcCchhhhc---CHHHHHHHHHHhh--c--CCCHHHHHH
Confidence            9998        666666667766542     245556665555555554   3344443221100  0  012567899


Q ss_pred             HHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhcccccccEEEEcchhhhcHHHHHHHHhh
Q 020972          247 CAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEGVTYTKILKEKVPLLMENILFLLSWLVVFLKLIE  316 (319)
Q Consensus       247 ~A~~GD~~A~~il~~a~~~Lg~~la~li~~l~~~~~~~~~~~~~~~~~~ivl~Gg~~~~~~~~~~~~~~~  316 (319)
                      ++++||+.|.+++++++++||.++++++++|||              +.|||+|++. . .+.|++.+.+
T Consensus       202 ~~~~gd~~a~~~~~~~~~~la~~l~~l~~~~dp--------------e~IvlgG~~~-~-~~~~~~~i~~  255 (291)
T PRK05082        202 RAGQGDEQAQALINRSAQAIARLIADLKATLDC--------------QCVVLGGSVG-L-AEGYLELVQA  255 (291)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhCC--------------CEEEEcCccc-c-HHHHHHHHHH
Confidence            999999999999999999999999999999998              4899999876 4 4566666544

>PRK09698 D-allose kinase; Provisional

Probab=99.97  E-value=1.9e-30  Score=241.03  Aligned_cols=240  Identities=13%  Similarity=0.102  Sum_probs=176.9

Q ss_pred             CCCcEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceE
Q 020972           19 GGREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAV   98 (319)
Q Consensus        19 ~m~~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~I   98 (319)
                      +|..|++|||+|+|+++++++|.         +|+++.+.+.++...  .+++. ++.+.+.+++++++.+   .++.+|
T Consensus         1 ~~~~~~lgidig~t~i~~~l~d~---------~g~i~~~~~~~~~~~--~~~~~-~~~l~~~i~~~~~~~~---~~i~gi   65 (302)
T PRK09698          1 KQKNVVLGIDMGGTHIRFCLVDA---------EGEILHCEKKRTAEV--IAPDL-VSGLGEMIDEYLRRFN---ARCHGI   65 (302)
T ss_pred             CCccEEEEEEcCCcEEEEEEEcC---------CCCEEEEEEeCCccc--cchHH-HHHHHHHHHHHHHHcC---CCeeEE
Confidence            46789999999999999999999         999999887754322  34454 8889999999988764   479999


Q ss_pred             EEeecCCCCchh---------------HHHHHHHHHhhCCCCceEEEeCcHHHHHHhhc----CCCCCeEEEEECcccee
Q 020972           99 CLAVSGVNHPTD---------------QQRILNWLRDIFPGNVRLYVHNDALAALASGT----MGKLHGCVLIAGTGTIA  159 (319)
Q Consensus        99 gig~pG~~~~~~---------------~~~l~~~L~~~~~~~~pv~v~NDa~aa~~g~~----~g~~~~v~v~~GTGigg  159 (319)
                      ||++||+++++.               ..+|++.|+++++  +||+++||+|++++++.    .+.++++|+++|||+|+
T Consensus        66 gia~pG~vd~~~g~i~~~~~~~~~~~~~~~l~~~l~~~~~--~pv~v~NDa~aaa~~E~~~~~~~~~~~~~v~lgtGIG~  143 (302)
T PRK09698         66 VMGFPALVSKDRRTVISTPNLPLTALDLYDLADKLENTLN--CPVFFSRDVNLQLLWDVKENNLTQQLVLGAYLGTGMGF  143 (302)
T ss_pred             EEeCCcceeCCCCEEEecCCCCccccccCCHHHHHHHHhC--CCEEEcchHhHHHHHHHHhcCCCCceEEEEEecCceEE
Confidence            999999976431               2478999999997  99999999999988874    24568999999999955


Q ss_pred             EeEecCCcEEeeCCCCCccCCcCChHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHcCCCChhhHHHHhccCCChHHHhc
Q 020972          160 YGFTEDGRDARAAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWARIAA  239 (319)
Q Consensus       160 ~gii~dG~~~raGg~Ghl~gd~Gsa~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~  239 (319)
                       |++.||++++        |..|.++|+||..+.     .++..|.|+-..|++...   +...+.++.......    .
T Consensus       144 -giv~~G~~~~--------G~~g~agEiGh~~v~-----~~~~~C~CG~~gclE~~~---S~~al~~~~~~~~~~----~  202 (302)
T PRK09698        144 -AVWMNGAPWT--------GAHGVAGELGHIPLG-----DMTQHCGCGNPGCLETNC---SGMALRRWYEQQPRD----Y  202 (302)
T ss_pred             -EEEECCEEee--------CCCCCccccCceEee-----CCCcccCCCCccchHhhc---CHHHHHHHHHHhcCC----C
Confidence             7999999998        666666777776542     234445555455555554   334444432211100    1


Q ss_pred             hhHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhcccccccEEEEcchhhhcHHHHHHHHhh
Q 020972          240 LVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEGVTYTKILKEKVPLLMENILFLLSWLVVFLKLIE  316 (319)
Q Consensus       240 ~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~la~li~~l~~~~~~~~~~~~~~~~~~ivl~Gg~~~~~~~~~~~~~~~  316 (319)
                      ..+.++++  .+|+   .+++++.++|+.++++++++|||              +.|||+|+++ +.++.+++.+.+
T Consensus       203 ~~~~l~~~--~~~~---~~~~~~~~~la~~l~~li~~ldP--------------~~IvlgG~~~-~~~~~~~~~l~~  259 (302)
T PRK09698        203 PLSDLFVH--AGDH---PFIQSLLENLARAIATSINLFDP--------------DAIILGGGVM-DMPAFPRETLIA  259 (302)
T ss_pred             CHHHHHHH--cCCH---HHHHHHHHHHHHHHHHHHHHhCC--------------CEEEEcCccc-cCchhHHHHHHH
Confidence            13455654  3665   47899999999999999999998              4799999988 666666665543

>PRK13311 N-acetyl-D-glucosamine kinase; Provisional

Probab=99.97  E-value=1.5e-30  Score=236.48  Aligned_cols=224  Identities=14%  Similarity=0.035  Sum_probs=165.1

Q ss_pred             EEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceEEEee
Q 020972           23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV  102 (319)
Q Consensus        23 ~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Igig~  102 (319)
                      +++|||+|+|+++++++|.         +|+++.+.+.+.. .  .+++++++.+.+.++++....    ..+.+|||++
T Consensus         1 ~~lgidiggt~i~~~l~d~---------~g~i~~~~~~~~~-~--~~~~~~~~~i~~~i~~~~~~~----~~~~gIgv~~   64 (256)
T PRK13311          1 MYYGFDMGGTKIELGVFDE---------NLQRIWHKRVPTP-R--EDYPQLLQILRDLTEEADTYC----GVQGSVGIGI   64 (256)
T ss_pred             CEEEEEECCCcEEEEEECC---------CCCEEEEEEecCC-C--cCHHHHHHHHHHHHHHHHhhc----CCCceEEEEe
Confidence            4799999999999999999         9999988887542 2  467778888887777664322    2346999999


Q ss_pred             cCCCCchh------------HHHHHHHHHhhCCCCceEEEeCcHHHHHHhhc-----CCCCCeEEEEECccceeEeEecC
Q 020972          103 SGVNHPTD------------QQRILNWLRDIFPGNVRLYVHNDALAALASGT-----MGKLHGCVLIAGTGTIAYGFTED  165 (319)
Q Consensus       103 pG~~~~~~------------~~~l~~~L~~~~~~~~pv~v~NDa~aa~~g~~-----~g~~~~v~v~~GTGigg~gii~d  165 (319)
                      ||+++++.            ..+|++.|+++|+  .||.++||+|+++++|.     ++.++++|+++|||++ +|++.|
T Consensus        65 pG~vd~~~g~i~~~~~~~w~~~~l~~~l~~~~~--~pV~leNDanaaAlaE~~~g~~~~~~~~v~i~lgtGiG-~giv~~  141 (256)
T PRK13311         65 PGLPNADDGTVFTANVPSAMGQPLQADLSRLIQ--REVRIDNDANCFALSEAWDPEFRTYPTVLGLILGTGVG-GGLIVN  141 (256)
T ss_pred             cCcEECCCCEEEccCCCcccCCChHHHHHHHHC--CCEEEEchhhHHHHHHHHhcCCCCCCcEEEEEECcCeE-EEEEEC
Confidence            99875431            3589999999997  99999999999999874     2457999999999995 589999


Q ss_pred             CcEEeeCCCCCccCCcCChHHHHHHHHHHHH-----HHhcCCCCCchhHHHHHHHcCCCChhhHHHHhccCCChHHHhch
Q 020972          166 GRDARAAGAGPILGDWGSGYGIAAQALTAVI-----RAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWARIAAL  240 (319)
Q Consensus       166 G~~~raGg~Ghl~gd~Gsa~~iG~~~~~~~~-----~~~dg~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~  240 (319)
                      |+++|        |..|.++|+||..+....     ....+..|.|....+++...   +...+.+....... ..  ..
T Consensus       142 G~l~~--------G~~g~AGEiGh~~v~~~~~~~~~~~~~~~~c~cG~~GclE~~~---S~~ai~~~~~~~~~-~~--~~  207 (256)
T PRK13311        142 GSIVS--------GRNHITGEFGHFRLPVDALDILGADIPRVPCGCGHRGCIENYI---SGRGFEWMYSHFYQ-HT--LP  207 (256)
T ss_pred             CEEec--------CCCCCCccceeEEeccCcccccccCCCCCcCCCCCccchhhee---cHHHHHHHHHHhcc-CC--CC
Confidence            99998        666677777776441000     00013345555455555544   33444332211000 00  13


Q ss_pred             hHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 020972          241 VPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSL  279 (319)
Q Consensus       241 ~~~v~~~A~~GD~~A~~il~~a~~~Lg~~la~li~~l~~  279 (319)
                      .+.+++++++||+.|++++++++++||.++++++++|++
T Consensus       208 ~~~l~~~~~~gd~~a~~~~~~~~~~la~~i~nl~~~~~~  246 (256)
T PRK13311        208 ATDIIAHYAAGEPKAVAHVERFMDVLAVCLGNLLTMLGS  246 (256)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            678999999999999999999999999999999999997

>PRK00292 glk glucokinase; Provisional

Probab=99.96  E-value=6.9e-29  Score=232.18  Aligned_cols=238  Identities=14%  Similarity=0.003  Sum_probs=155.9

Q ss_pred             cEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHH-cCCCccccceEEE
Q 020972           22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLK-SGSNRSAVRAVCL  100 (319)
Q Consensus        22 ~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~-~~~~~~~i~~Igi  100 (319)
                      .|+||+|+|||+++++++|..        .++++.+.+.++..     .+    .+.+.+.+++++ .+   .++.+|||
T Consensus         2 ~~~lgiDIGgT~i~~~l~~~~--------~~~~~~~~~~~~~~-----~~----~~~~~l~~~l~~~~~---~~~~gigI   61 (316)
T PRK00292          2 KPALVGDIGGTNARFALCDWA--------NGEIEQIKTYATAD-----YP----SLEDAIRAYLADEHG---VQVRSACF   61 (316)
T ss_pred             ceEEEEEcCccceEEEEEecC--------CCceeeeEEEecCC-----CC----CHHHHHHHHHHhccC---CCCceEEE
Confidence            479999999999999999951        45557666654321     12    244455555554 22   26889999


Q ss_pred             eecCCCCchh-------HHHHHHHHHhhCCCCce-EEEeCcHHHHHHhhcC---------C------CCCeEEEEECccc
Q 020972          101 AVSGVNHPTD-------QQRILNWLRDIFPGNVR-LYVHNDALAALASGTM---------G------KLHGCVLIAGTGT  157 (319)
Q Consensus       101 g~pG~~~~~~-------~~~l~~~L~~~~~~~~p-v~v~NDa~aa~~g~~~---------g------~~~~v~v~~GTGi  157 (319)
                      |+||+++...       +....+.|+++|+  +| |.++||+|++++++..         +      .++++|+++|||+
T Consensus        62 g~pG~vd~~~i~~~n~~w~~~~~~l~~~~~--~p~v~l~ND~~aaalgE~~~~~~~~~~~g~~~~~~~~~~~~v~~GTGi  139 (316)
T PRK00292         62 AIAGPVDGDEVRMTNHHWAFSIAAMKQELG--LDHLLLINDFTAQALAIPRLGEEDLVQIGGGEPVPGAPIAVIGPGTGL  139 (316)
T ss_pred             EEeCcccCCEEEecCCCcccCHHHHHHHhC--CCeEEEEecHHHHHcccccCCHhheeEeCCCCCCCCCcEEEEEcCCcc
Confidence            9999986421       2223588999997  85 9999999999998742         2      2679999999999


Q ss_pred             eeEeEecCC---cEEeeCCCCCccCCcCChHHHH--HHHHHHHHHHhcCCCCCchhHHHHHHHcCCCChhhHHHHhc---
Q 020972          158 IAYGFTEDG---RDARAAGAGPILGDWGSGYGIA--AQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTY---  229 (319)
Q Consensus       158 gg~gii~dG---~~~raGg~Ghl~gd~Gsa~~iG--~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~~~~~l~~~~~---  229 (319)
                      |+ |+++||   ....+||+||+.-+.....+..  ...+.     ..++       .+++..+   +...+.+...   
T Consensus       140 G~-giv~~g~~g~~g~agE~GH~~~~~~~~~~~~~~~~~c~-----~~~~-------gclE~~~---Sg~~L~~~~~~~~  203 (316)
T PRK00292        140 GV-AGLVPVDGRWIVLPGEGGHVDFAPRSEEEAQILQYLRA-----EFGH-------VSAERVL---SGPGLVNLYRAIC  203 (316)
T ss_pred             eE-EEEEecCCceEEccCCcccccCCCCChHHHHHHHHHHH-----hcCC-------ceeEeee---cHHhHHHHHHHHH
Confidence            55 788886   2233888898876433222111  00010     0011       0111111   2222222110   


Q ss_pred             -cCCChHHHhchhHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhcccccc-cEEEEcchhhhc
Q 020972          230 -VDPSWARIAALVPVVVSCAEAGD-EVANKILQDSVEELALSVKAVVQRLSLSGEGVTYTKILKEKV-PLLMENILFLLS  306 (319)
Q Consensus       230 -~~~~~~~~a~~~~~v~~~A~~GD-~~A~~il~~a~~~Lg~~la~li~~l~~~~~~~~~~~~~~~~~-~ivl~Gg~~~~~  306 (319)
                       ....... ....+.|++++++|| +.|++++++++++||.+++++++.|||              + .+||+||++.+.
T Consensus       204 ~~~~~~~~-~~~~~~i~~~a~~gdd~~A~~~~~~~~~~lg~~i~~l~~~~~P--------------~~~vvi~Gg~~~~~  268 (316)
T PRK00292        204 KADGREPE-LLTPADITERALAGSCPLCRRTLSLFCVILGRVAGNLALTLGA--------------RGGVYIAGGIVPRF  268 (316)
T ss_pred             hhcCCCcc-cCCHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHhcC--------------CceEEEeCchHHhH
Confidence             0000000 013678999999998 999999999999999999999999998              3 699999998667


Q ss_pred             HHHHHH
Q 020972          307 WLVVFL  312 (319)
Q Consensus       307 ~~~~~~  312 (319)
                      ++.+++
T Consensus       269 ~~~~~~  274 (316)
T PRK00292        269 LEFFKA  274 (316)
T ss_pred             Hhhhcc
Confidence            777766

>PRK12408 glucokinase; Provisional

Probab=99.95  E-value=4.5e-27  Score=221.54  Aligned_cols=240  Identities=18%  Similarity=0.082  Sum_probs=153.3

Q ss_pred             cEEEEEEcCccceeEEEEeCccCCCCCCCCCC------eEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCcccc
Q 020972           22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLP------VLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAV   95 (319)
Q Consensus        22 ~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~------il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i   95 (319)
                      .++|++||||||+|++++|.         +++      ++...+.++...         +.+.+++++++++ .   .++
T Consensus        16 ~~~L~~DIGGT~i~~al~d~---------~g~~~~~~~~~~~~~~~t~~~---------~~~~~~i~~~~~~-~---~~~   73 (336)
T PRK12408         16 ESFVAADVGGTHVRVALVCA---------SPDAAKPVELLDYRTYRCADY---------PSLAAILADFLAE-C---APV   73 (336)
T ss_pred             ccEEEEEcChhhhheeEEec---------cCCccccccccceeEecCCCc---------cCHHHHHHHHHhc-C---CCc
Confidence            45899999999999999997         666      344444332111         1234445555554 1   258


Q ss_pred             ceEEEeecCC-CCch-------hHHHHHHHHHhhCCCCc-eEEEeCcHHHHHHhhc-C-------------CC-CCeEEE
Q 020972           96 RAVCLAVSGV-NHPT-------DQQRILNWLRDIFPGNV-RLYVHNDALAALASGT-M-------------GK-LHGCVL  151 (319)
Q Consensus        96 ~~Igig~pG~-~~~~-------~~~~l~~~L~~~~~~~~-pv~v~NDa~aa~~g~~-~-------------g~-~~~v~v  151 (319)
                      .+||||+||+ ++..       .+..+.+.|++.++  + ||.++||+|++++++. .             +. .+.+++
T Consensus        74 ~~igIg~pG~~~~~g~v~~~nl~w~~~~~~l~~~~~--~~~V~l~ND~naaa~gE~~~~~~~~~~~~g~~~~~~~~~~~i  151 (336)
T PRK12408         74 RRGVIASAGYALDDGRVITANLPWTLSPEQIRAQLG--LQAVHLVNDFEAVAYAAPYMEGNQVLQLSGPAQAAAGPALVL  151 (336)
T ss_pred             CEEEEEecCCceECCEEEecCCCCccCHHHHHHHcC--CCeEEEeecHHHHHcccccCCHhHeeeecCCCCCCCCcEEEE
Confidence            8999999998 3211       12346788999997  7 5999999999999873 2             23 578999


Q ss_pred             EECccceeEeEecCCc---EEeeCCCCCccCCcCChHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHcCCCChhhHHHHh
Q 020972          152 IAGTGTIAYGFTEDGR---DARAAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWT  228 (319)
Q Consensus       152 ~~GTGigg~gii~dG~---~~raGg~Ghl~gd~Gsa~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~~~~~l~~~~  228 (319)
                      ++|||+|+ |+++||+   ...+||+||+.-+..+.-+.  ...    ...+++..    ..+++...   +...+.+.+
T Consensus       152 ~~GTGiGg-givi~g~~g~~~~agE~GH~~~~~~~~~~~--~l~----~~~~~~~~----~~~~E~~~---Sg~gL~~~~  217 (336)
T PRK12408        152 GPGTGLGA-ALWIPNGGRPVVLPTEAGQAALAAASELEM--QLL----QHLLRTRT----HVPIEHVL---SGPGLLNLY  217 (336)
T ss_pred             ECCCcceE-EEEEcCCCceeeecCccccccCCCCCHHHH--HHH----HHHHhhCC----ceeHhhee---cHHHHHHHH
Confidence            99999965 6888876   34489999986533221110  000    00011110    01122222   222222221


Q ss_pred             cc---CCChHHHhchhHHHHHHHHcC-CHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhccccccc-EEEEcchh
Q 020972          229 YV---DPSWARIAALVPVVVSCAEAG-DEVANKILQDSVEELALSVKAVVQRLSLSGEGVTYTKILKEKVP-LLMENILF  303 (319)
Q Consensus       229 ~~---~~~~~~~a~~~~~v~~~A~~G-D~~A~~il~~a~~~Lg~~la~li~~l~~~~~~~~~~~~~~~~~~-ivl~Gg~~  303 (319)
                      ..   ..........++.|+++++++ |+.|++++++++++||..+.++++.|||              +. |||+||++
T Consensus       218 ~~~~~~~~~~~~~~~~~~v~~~a~~ggD~~A~~~~~~~~~~La~~i~nl~~~ldP--------------e~GIvIGGGIs  283 (336)
T PRK12408        218 RALCALRGATPVHASPAAITAAALAGDDALAHEALQVFCGFLGSVVGDMALAYGA--------------RGGVYLAGGIL  283 (336)
T ss_pred             HHHHhhcCCCcccCCHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC--------------CceEEEECchh
Confidence            10   000000001367899988875 9999999999999999999999999998              47 99999998


Q ss_pred             hhcHHHHHHH
Q 020972          304 LLSWLVVFLK  313 (319)
Q Consensus       304 ~~~~~~~~~~  313 (319)
                      .+..+.++++
T Consensus       284 ~~~~~~l~~~  293 (336)
T PRK12408        284 PQIADFLARS  293 (336)
T ss_pred             HhHHhhhcCH
Confidence            4436666554

>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional

Probab=99.93  E-value=1.1e-24  Score=221.50  Aligned_cols=243  Identities=13%  Similarity=-0.014  Sum_probs=158.7

Q ss_pred             cEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceEEEe
Q 020972           22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLA  101 (319)
Q Consensus        22 ~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Igig  101 (319)
                      +++||+|+|||+++++++|.         +|+++.+.+.++...         +.+.+.+++++++.+.  .++.+||||
T Consensus        18 ~~~L~iDIGGT~ir~al~~~---------~g~i~~~~~~~t~~~---------~~~~~~i~~~l~~~~~--~~~~~igig   77 (638)
T PRK14101         18 GPRLLADVGGTNARFALETG---------PGEITQIRVYPGADY---------PTLTDAIRKYLKDVKI--GRVNHAAIA   77 (638)
T ss_pred             CCEEEEEcCchhheeeeecC---------CCcccceeEEecCCC---------CCHHHHHHHHHHhcCC--CCcceEEEE
Confidence            46999999999999999998         899888877654221         3355666677765542  358899999


Q ss_pred             ecCCCCchh--------HHHHHHHHHhhCCCCc-eEEEeCcHHHHHHhh---------c----CCCCCeEEEEECc--cc
Q 020972          102 VSGVNHPTD--------QQRILNWLRDIFPGNV-RLYVHNDALAALASG---------T----MGKLHGCVLIAGT--GT  157 (319)
Q Consensus       102 ~pG~~~~~~--------~~~l~~~L~~~~~~~~-pv~v~NDa~aa~~g~---------~----~g~~~~v~v~~GT--Gi  157 (319)
                      +||+++...        ..++ +.|++.|+  + ||.++||+||+++++         +    ++.++++++++||  |+
T Consensus        78 ~pGpVd~~~~~~~nl~w~~~~-~~l~~~~g--~~~v~l~ND~~aaA~ge~~l~~~e~~~~G~g~~~~~~~~~~lGtGTGl  154 (638)
T PRK14101         78 IANPVDGDQVRMTNHDWSFSI-EATRRALG--FDTLLVVNDFTALAMALPGLTDAQRVQVGGGTRRQNSVIGLLGPGTGL  154 (638)
T ss_pred             EecCccCCeeeecCCCcEecH-HHHHHHcC--CCeEEEEchHHHHHcCCccCCHHHeEEeCCCCCCCCCcEEEEECCccc
Confidence            999987531        2355 78999997  6 589999999999983         2    2356788888755  56


Q ss_pred             eeEeEe-cCCc-EEeeCCCCCccCCcCChHHHHHHH-HHHHH--HHhcCCCCCchhHHHHHHHcCCCChhhHHHHhccCC
Q 020972          158 IAYGFT-EDGR-DARAAGAGPILGDWGSGYGIAAQA-LTAVI--RAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDP  232 (319)
Q Consensus       158 gg~gii-~dG~-~~raGg~Ghl~gd~Gsa~~iG~~~-~~~~~--~~~dg~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~  232 (319)
                      |+++++ .+|+ +++.+++||+.-.....-+..... +....  .+.+...+..++.+........          ....
T Consensus       155 G~a~lv~~~g~~~~~g~E~GH~~~~~~~~~e~~~~~~~~~~~g~~~~E~~~Sg~gL~~~~~~~~~~----------~~~~  224 (638)
T PRK14101        155 GVSGLIPADDRWIALGSEGGHASFAPQDEREDLVLQYARKKYPHVSFERVCAGPGMEIIYRALAAR----------DKKR  224 (638)
T ss_pred             eeeEEEecCCeeEECCCCccccCCCCCCHHHHHHHHHHHHhcCcceeeeecchhhHHHHHHHHHhh----------cCCC
Confidence            533453 7777 778999999865332211111000 00000  0011111222222211111100          0000


Q ss_pred             ChHHHhchhHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhcccccccEEEEcchhhhcHHHHHH
Q 020972          233 SWARIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEGVTYTKILKEKVPLLMENILFLLSWLVVFL  312 (319)
Q Consensus       233 ~~~~~a~~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~la~li~~l~~~~~~~~~~~~~~~~~~ivl~Gg~~~~~~~~~~~  312 (319)
                      ....  ..++.|++++++||+.|++++++++++||..+.++++.+|+             |+.|||+||++.+..++|..
T Consensus       225 ~~~~--~~~~~i~~~a~~gd~~A~~~~~~~~~~lg~~~~nl~~~~~~-------------p~~vvigGGIs~~~~~~l~~  289 (638)
T PRK14101        225 VAAN--VDTAEIVERAHAGDALALEAVECFCAILGTFAGNLALTLGA-------------LGGIYIGGGVVPKLGELFTR  289 (638)
T ss_pred             CcCc--CCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhCC-------------CCcEEEeCcHHHHHHHHcCh
Confidence            0001  13678999999999999999999999999999999999983             25799999998555566553

>TIGR00749 glk glucokinase, proteobacterial type

Probab=99.92  E-value=1.9e-24  Score=202.20  Aligned_cols=244  Identities=15%  Similarity=0.006  Sum_probs=150.4

Q ss_pred             EEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCC-ccccceEEEeec
Q 020972           25 LGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSN-RSAVRAVCLAVS  103 (319)
Q Consensus        25 lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~-~~~i~~Igig~p  103 (319)
                      |.+|+||||++++++|.         ++.++.+.+.+++    ..    .+.+.+.+++++++.+.. ...+.+++||+|
T Consensus         1 l~~DIGGT~i~~glvd~---------~g~~l~~~~~~~~----~~----~~~l~~~i~~~l~~~~~~~~~~~~~~~Igi~   63 (316)
T TIGR00749         1 LVGDIGGTNARLALCEI---------APGEISQAKTYSG----LD----FPSLEAVVRVYLEEHKVELKDPIAKGCFAIA   63 (316)
T ss_pred             CeEecCcceeeEEEEec---------CCCceeeeEEEec----CC----CCCHHHHHHHHHHhcccccCCCcCeEEEEEe
Confidence            57899999999999998         7766655432211    12    234566666666554321 123567899999


Q ss_pred             CCCCch--------hHHHHHHHHHhhCCCCc-eEEEeCcHHHHHHhh--------c-----CCCCCeEEEEECccceeE-
Q 020972          104 GVNHPT--------DQQRILNWLRDIFPGNV-RLYVHNDALAALASG--------T-----MGKLHGCVLIAGTGTIAY-  160 (319)
Q Consensus       104 G~~~~~--------~~~~l~~~L~~~~~~~~-pv~v~NDa~aa~~g~--------~-----~g~~~~v~v~~GTGigg~-  160 (319)
                      |+++..        ...++. .|++.++  . ||.++||+||+++++        .     ++.++++++++|||+|++ 
T Consensus        64 Gpv~~~~v~~~nl~w~~~~~-~l~~~~g--~~~V~l~ND~naaa~ge~~l~~~~~~~~g~~~~~~~~~~v~lGtGtG~G~  140 (316)
T TIGR00749        64 CPITGDWVAMTNHTWAFSIA-ELKQNLG--FSHLEIINDFTAVSYAIPGLKKEDLIQFGGAEPVEGKPIAILGAGTGLGV  140 (316)
T ss_pred             CcccCCEEEecCCCCeeCHH-HHHHhcC--CCeEEEEecHHHHHcCCCCCCHHHeEEeCCCCCCCCCcEEEEecCCCcee
Confidence            986532        125775 8888887  6 699999999999996        2     345678888886655332 


Q ss_pred             eEec---CCcEEe-eCCCCCccCCcCChHHHHHHHHHHHHHH------hcCCCCCchhHHHHHHHcCCCChhhHHHHhcc
Q 020972          161 GFTE---DGRDAR-AAGAGPILGDWGSGYGIAAQALTAVIRA------YDGRGPDTMLTSNILSTLELSSPDELIGWTYV  230 (319)
Q Consensus       161 gii~---dG~~~r-aGg~Ghl~gd~Gsa~~iG~~~~~~~~~~------~dg~~~~~~l~~~~~~~~~~~~~~~l~~~~~~  230 (319)
                      ++++   ||+++. +||+||+.-.....-+  ...++ .+.+      .+...+.+++.+........... .  .  ..
T Consensus       141 ~~vi~~~~g~l~~~agE~GH~~~~~~~~~~--~~~~~-~l~~~~~~g~~E~~~Sg~gl~~~~~~~~~~~~~-~--~--~~  212 (316)
T TIGR00749       141 AHLIHQVDGRWVVLPGEGGHVDFAPNSELE--AIILE-YLRAKIGHVSAERVLSGPGLVNIYEALVKADPE-R--Q--FN  212 (316)
T ss_pred             eEEEEcCCCCEEECCCCcccccCCCCCHHH--HHHHH-HHHHhcCCceeeeeecHHHHHHHHHHHHhhcCc-c--c--cc
Confidence            2355   899876 9999999653322111  00000 0011      11112233333332222110000 0  0  00


Q ss_pred             CCChHHHhchhHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhcccccccEEEEcchhhhcHHH
Q 020972          231 DPSWARIAALVPVVVSCAEAGD-EVANKILQDSVEELALSVKAVVQRLSLSGEGVTYTKILKEKVPLLMENILFLLSWLV  309 (319)
Q Consensus       231 ~~~~~~~a~~~~~v~~~A~~GD-~~A~~il~~a~~~Lg~~la~li~~l~~~~~~~~~~~~~~~~~~ivl~Gg~~~~~~~~  309 (319)
                      .....+  ..++.|++++++|| +.|++++++++++||..+++++++|||.|             -+++.||++++..+.
T Consensus       213 ~~~~~~--~~~~~I~~aa~~Gdd~~A~~~~~~~~~~lg~~i~nl~~~ldpeg-------------gv~v~GG~~~~~~~~  277 (316)
T TIGR00749       213 KLPQEN--LKPKDISERALAGSCTDCRRALSLFCVIYGRFAGNLALNLGTRG-------------GVYIAGGIVPRFIEF  277 (316)
T ss_pred             cccccc--CCHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-------------cEEEECcHHHhHHhh
Confidence            000011  13678999999997 99999999999999999999999999933             377888887444454


Q ss_pred             HH
Q 020972          310 VF  311 (319)
Q Consensus       310 ~~  311 (319)
                      +.
T Consensus       278 ~~  279 (316)
T TIGR00749       278 FK  279 (316)
T ss_pred             hC
Confidence            43

This model represents glucokinase of E. coli and close homologs, mostly from other proteobacteria, presumed to have equivalent function. This glucokinase is more closely related to a number of uncharacterized paralogs than to the glucokinase glcK (fromerly yqgR) of Bacillus subtilis and its closest homologs, so the two sets are represented by separate models.

>PF00480 ROK: ROK family; InterPro: IPR000600 A family of bacterial proteins has been described which groups transcriptional repressors, sugar kinases and yet uncharacterised open reading frames []

Probab=99.86  E-value=3.5e-22  Score=171.50  Aligned_cols=138  Identities=20%  Similarity=0.228  Sum_probs=114.4

Q ss_pred             EEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceEEEeecCC
Q 020972           26 GLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVSGV  105 (319)
Q Consensus        26 GIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Igig~pG~  105 (319)
                      |||+|+|+++++++|.         +|+++.+.+.+..    .+++++++.+.+.+++++.+.+..     +|||++||+
T Consensus         1 gidig~~~i~~~l~d~---------~g~ii~~~~~~~~----~~~~~~~~~l~~~i~~~~~~~~~~-----gIgi~~pG~   62 (179)
T PF00480_consen    1 GIDIGGTSIRIALVDL---------DGEIIYSESIPTP----TSPEELLDALAELIERLLADYGRS-----GIGISVPGI   62 (179)
T ss_dssp             EEEEESSEEEEEEEET---------TSCEEEEEEEEHH----SSHHHHHHHHHHHHHHHHHHHTCE-----EEEEEESSE
T ss_pred             CEEECCCEEEEEEECC---------CCCEEEEEEEECC----CCHHHHHHHHHHHHHHHHhhcccc-----cEEEecccc
Confidence            7999999999999999         9999999887532    478999999999999999876532     999999999


Q ss_pred             CCchh------------HHHHHHHHHhhCCCCceEEEeCcHHHHHHhhc-----CCCCCeEEEEECccceeEeEecCCcE
Q 020972          106 NHPTD------------QQRILNWLRDIFPGNVRLYVHNDALAALASGT-----MGKLHGCVLIAGTGTIAYGFTEDGRD  168 (319)
Q Consensus       106 ~~~~~------------~~~l~~~L~~~~~~~~pv~v~NDa~aa~~g~~-----~g~~~~v~v~~GTGigg~gii~dG~~  168 (319)
                      ++.+.            ..+|++.|+++|+  +||.++||++++++++.     .+.++++|+.+|||+ |++++.||++
T Consensus        63 v~~~~g~i~~~~~~~~~~~~l~~~l~~~~~--~pv~i~Nd~~~~a~ae~~~~~~~~~~~~~~l~ig~Gi-G~~ii~~g~i  139 (179)
T PF00480_consen   63 VDSEKGRIISSPNPGWENIPLKEELEERFG--VPVIIENDANAAALAEYWFGAAKDCDNFLYLYIGTGI-GAGIIINGKI  139 (179)
T ss_dssp             EETTTTEEEECSSGTGTTCEHHHHHHHHHT--SEEEEEEHHHHHHHHHHHHSTTTTTSSEEEEEESSSE-EEEEEETTEE
T ss_pred             CcCCCCeEEecCCCCcccCCHHHHhhcccc--eEEEEecCCCcceeehhhcCccCCcceEEEEEeecCC-Ccceeccccc
Confidence            76542            3589999999997  99999999999999874     245799999999999 5579999999


Q ss_pred             EeeCCCCCccCCcCChHHHHHHHH
Q 020972          169 ARAAGAGPILGDWGSGYGIAAQAL  192 (319)
Q Consensus       169 ~raGg~Ghl~gd~Gsa~~iG~~~~  192 (319)
                      ++        |..+.++|+||+.+
T Consensus       140 ~~--------G~~~~aGeigh~~~  155 (179)
T PF00480_consen  140 YR--------GSNGFAGEIGHMPV  155 (179)
T ss_dssp             ET--------TTTS-TTGGGGSBS
T ss_pred             cc--------CCCccccceeeeec
Confidence            98        55555566665544

This family, known as ROK (Repressor, ORF, Kinase) includes the xylose operon repressor, xylR, from Bacillus subtilis, Lactobacillus pentosus and Staphylococcus xylosus; N-acetylglucosamine repressor, nagC, from Escherichia coli; glucokinase 2.7.1.2 from EC from Streptomyces coelicolor; fructokinase 2.7.1.4 from EC from Pediococcus pentosaceus, Streptococcus mutans and Zymomonas mobilis; allokinase 2.7.1.55 from EC and mlc from E. coli; and E. coli hypothetical proteins yajF and yhcI and the corresponding Haemophilus influenzae proteins. The repressor proteins (xylR and nagC) from this family possess an N-terminal region not present in the sugar kinases and which contains an helix-turn-helix DNA-binding motif.; PDB: 2GUP_A 3LM2_B 3EO3_A 2YHY_A 2YHW_A 2YI1_A 3MCP_A 1Z05_A 3HTV_A 3OHR_A ....

>TIGR02707 butyr_kinase butyrate kinase

Probab=99.80  E-value=7.4e-18  Score=159.06  Aligned_cols=250  Identities=18%  Similarity=0.104  Sum_probs=158.2

Q ss_pred             EEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHH---HHHHHHHHHcCCCccccceEEE
Q 020972           24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIE---KVMADALLKSGSNRSAVRAVCL  100 (319)
Q Consensus        24 ~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~---~~i~~~l~~~~~~~~~i~~Igi  100 (319)
                      +|.|..|+|+||++|++.         +++++.+....+.... .+++.+++++.   +.|.+++++.++..+++.+| .
T Consensus         2 il~in~Gsts~k~alf~~---------~~~~~~~~~~~~~~~~-~~~~~~~~q~~~r~~~i~~~l~~~~~~~~~i~av-~   70 (351)
T TIGR02707         2 ILVINPGSTSTKLAVFED---------ERPLFEETLRHSVEEL-GRFKNVIDQFEFRKQVILQFLEEHGISISKLDAV-V   70 (351)
T ss_pred             EEEEecCchhheEEEEeC---------CCceeeeeecCCHHHh-cccccHHHHHHHHHHHHHHHHHHcCCCcccccEE-E
Confidence            789999999999999998         8888777655432221 24456677777   88888888887766789888 7


Q ss_pred             eecCCCCchh--------------------------HHHHHHHHHhhCCCCceEEEeCc---------HHHHHHhhc---
Q 020972          101 AVSGVNHPTD--------------------------QQRILNWLRDIFPGNVRLYVHND---------ALAALASGT---  142 (319)
Q Consensus       101 g~pG~~~~~~--------------------------~~~l~~~L~~~~~~~~pv~v~ND---------a~aa~~g~~---  142 (319)
                      +-||+++.-.                          ..++...+.+.++  +|.++.|+         +++.++.++   
T Consensus        71 ~RgG~~~~v~Gg~~~v~~~~~~~l~~~~~~~~~hn~~~~~~~~~~~~~~--~p~~vfDt~fh~~~~~~a~~~alpe~~Rr  148 (351)
T TIGR02707        71 GRGGLLKPIPGGTYLVNEAMLEDLKSGKRGEHASNLGAIIANELADELN--IPAYIVDPVVVDEMEDVARISGLPEIERK  148 (351)
T ss_pred             ECCCCCceecceeEEECHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHcC--CCEEEcCChhhhcChHHHHHhccchhhhh
Confidence            8888765311                          1234444555565  89889999         776555221   


Q ss_pred             --------------------CCCC--CeEEEEECccceeEeEecCCcEEeeCCCCCccCCcCChHHHHHHHHHHHHHHhc
Q 020972          143 --------------------MGKL--HGCVLIAGTGTIAYGFTEDGRDARAAGAGPILGDWGSGYGIAAQALTAVIRAYD  200 (319)
Q Consensus       143 --------------------~g~~--~~v~v~~GTGigg~gii~dG~~~raGg~Ghl~gd~Gsa~~iG~~~~~~~~~~~d  200 (319)
                                          ++.+  +++++.+|||+++ +++.||+++.        |..|.++|+++...+      .
T Consensus       149 ygfHgls~~~v~~~~~~~~g~~~~~~~~I~~hLGtGig~-~ai~~Gk~vd--------gs~G~agEg~~~~tr------~  213 (351)
T TIGR02707       149 SIFHALNQKAVARRIAKELGKRYEEMNLIVAHMGGGISV-AAHRKGRVID--------VNNALDGEGPFSPER------S  213 (351)
T ss_pred             hchhhhhHHHHHHHHHHHcCCCcccCCEEEEEeCCCcee-eeEECCEEEE--------cCCCCCCcCCcccCc------c
Confidence                                2223  8999999999965 6889999987        333333332221100      0


Q ss_pred             CCCCCchhHHHHHHHcCCCChhhHHHHhccCCChHH-H-hchhHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 020972          201 GRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWAR-I-AALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLS  278 (319)
Q Consensus       201 g~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~-a~~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~la~li~~l~  278 (319)
                      |..+......  ....+..+..++.+.+.+...... . ....+.|++++++||+.|+.++++++++|++.++++++.|+
T Consensus       214 G~id~~~~~~--~~~~~~~s~~el~~~l~~~sGl~~~~gs~d~reI~~~a~~GD~~A~~a~d~~~~~la~~Ia~l~~~l~  291 (351)
T TIGR02707       214 GTLPLGDLVD--LCYSGKYTKEEMKKKIVGNGGLVAYLGTNDAREVEKRIEAGDEKAKLILDAMAYQIAKEIGKMAVVLK  291 (351)
T ss_pred             CCCCchhHHH--HHhcCCCCHHHHHHHHHhccCcccccCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            0000000000  000000112222222221110000 0 12367899999999999999999999999999999999994


Q ss_pred             ccCCCcchhhcccccccEEEEcchhhhcHHHHHHHHhhc
Q 020972          279 LSGEGVTYTKILKEKVPLLMENILFLLSWLVVFLKLIEG  317 (319)
Q Consensus       279 ~~~~~~~~~~~~~~~~~ivl~Gg~~~~~~~~~~~~~~~~  317 (319)
                      +            +|+.|||+||+. .+ +.+++++.+.
T Consensus       292 g------------~pD~IV~gGGI~-e~-~~l~~~I~~~  316 (351)
T TIGR02707       292 G------------KVDAIVLTGGLA-YS-KYFVSEIIKR  316 (351)
T ss_pred             C------------CCCEEEEcchhh-cC-HHHHHHHHHH
Confidence            3            236899999998 54 5567777653

This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.

>PTZ00288 glucokinase 1; Provisional

Probab=99.74  E-value=9.7e-17  Score=153.61  Aligned_cols=261  Identities=13%  Similarity=0.027  Sum_probs=151.2

Q ss_pred             CcEEEEEEcCccceeEEEEeCccCCCCCCCCCCeE-EEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceEE
Q 020972           21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLPVL-ARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVC   99 (319)
Q Consensus        21 ~~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il-~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Ig   99 (319)
                      ..|++++|||||++|+++++..-.     +++... ...+.+.+   ..+..+.++.+.++++++.+... .-..+...+
T Consensus        25 ~~~~~~~DiGgt~~R~~~~~~~~~-----~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~   95 (405)
T PTZ00288         25 GPIFVGCDVGGTNARVGFAREVQH-----DDSGVHIIYVRFNVT---KTDIRELLEFFDEVLQKLKKNLS-FIQRVAAGA   95 (405)
T ss_pred             CCeEEEEEecCCceEEEEEeccCC-----CCCceeEEEEecccc---cccHHHHHHHHHHHHHHHHhcCc-cccCcCeEE
Confidence            358999999999999999985100     011222 22222201   13456666777777766655321 114566778


Q ss_pred             EeecCCCCchhH-------H---HHHHHHHhhCCCCceEEEeCcHHHHHHhhc---------------------------
Q 020972          100 LAVSGVNHPTDQ-------Q---RILNWLRDIFPGNVRLYVHNDALAALASGT---------------------------  142 (319)
Q Consensus       100 ig~pG~~~~~~~-------~---~l~~~L~~~~~~~~pv~v~NDa~aa~~g~~---------------------------  142 (319)
                      +++||++....-       .   .+.+.-...|+. .++.+-||=.+.+++-.                           
T Consensus        96 iAvAGPV~~~~~~~~~~~~~~~~~lTNlpw~i~~~-~~~~liNDfeA~aygi~~l~~~~~~~~~f~~~~~~~~~~~l~~~  174 (405)
T PTZ00288         96 ISVPGPVTGGQLAGPFNNLKGIARLTDYPVELFPP-GRSALLNDLEAGAYGVLAVSNAGRLSEYFKVMWKGTQWDALSEG  174 (405)
T ss_pred             EEEeCceeCCEeeccccccccccccCCCCchhcCC-CeEEEEEhHHHHhCcccccChhhcccccccccccccceeeecCC
Confidence            999999743211       0   111111112663 47999999998877621                           


Q ss_pred             ------CCCCCeEEEEECccceeEeEecCCcE-----EeeCCCCCccC--CcCChHHHHHHHHHHHHHHhc--CCCCCch
Q 020972          143 ------MGKLHGCVLIAGTGTIAYGFTEDGRD-----ARAAGAGPILG--DWGSGYGIAAQALTAVIRAYD--GRGPDTM  207 (319)
Q Consensus       143 ------~g~~~~v~v~~GTGigg~gii~dG~~-----~raGg~Ghl~g--d~Gsa~~iG~~~~~~~~~~~d--g~~~~~~  207 (319)
                            .+..+.+++..|||+|+ ++++++++     ..+||.||+.-  ..+..++++...++...+...  ++.  +.
T Consensus       175 ~~~g~~~~~~~~~Vlg~GTGLG~-alli~~~l~~G~~~~agEgGHv~~~~~~~~~~~~g~~l~~~l~~~~~~~g~~--~~  251 (405)
T PTZ00288        175 KPAGSVIGRGRCMVLAPGTGLGS-SLIHYVGVSDQYIVIPLECGHLSISWPANEDSDYVQALAGYLASKALSKGID--ST  251 (405)
T ss_pred             CCCcccCCCCCEEEEEeccceeE-EEEECCeecCCcccccccccceeeccCCCCccchhHHHHHHHHhhhcccccc--cc
Confidence                  12345699999999966 57777774     34899999866  334445666655443322221  100  00


Q ss_pred             hHHHHHHHcCCCChhhHHHH---hccCCChHHHhchhHHHHHHHH-cCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 020972          208 LTSNILSTLELSSPDELIGW---TYVDPSWARIAALVPVVVSCAE-AGDEVANKILQDSVEELALSVKAVVQRLSLSGEG  283 (319)
Q Consensus       208 l~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~a~~~~~v~~~A~-~GD~~A~~il~~a~~~Lg~~la~li~~l~~~~~~  283 (319)
                      ..-+++..+   +...|...   ................++++|. +||+.|.+++++++++||+.+.+++..++|    
T Consensus       252 ~~vs~E~v~---SG~GL~~ly~~l~~~~~~~~~~~~~a~ia~~A~~~gD~~A~~al~~f~~~LG~~~~nlal~l~P----  324 (405)
T PTZ00288        252 VYPIYEDIV---SGRGLEFNYAYEKRGNKPSAPLKEAAEVAKLAKYGSDVAAVKAMKRHYKYLMRLAAEISMQFLP----  324 (405)
T ss_pred             CceeEeEEe---cHHHHHHHHHHHhccCCCccCcCCHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC----
Confidence            000011111   12222211   1100000000112466788777 589999999999999999999999999998    


Q ss_pred             cchhhcccccccEEEEcchhhhcHHHHH
Q 020972          284 VTYTKILKEKVPLLMENILFLLSWLVVF  311 (319)
Q Consensus       284 ~~~~~~~~~~~~ivl~Gg~~~~~~~~~~  311 (319)
                                ..|||+||+..+..+.+.
T Consensus       325 ----------~~VvIgGGi~~~~~~~l~  342 (405)
T PTZ00288        325 ----------LTVVLMGDNIVYNSFFFD  342 (405)
T ss_pred             ----------CEEEEECccHHhhHHHHh
Confidence                      348898878756655554

>PRK03011 butyrate kinase; Provisional

Probab=99.66  E-value=7.9e-15  Score=138.80  Aligned_cols=238  Identities=17%  Similarity=0.148  Sum_probs=145.8

Q ss_pred             EEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCC-----CccccCHHHHHHHHHHHHHHHHHHcCCCccccce
Q 020972           23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCS-----NHNSVGEDAARETIEKVMADALLKSGSNRSAVRA   97 (319)
Q Consensus        23 ~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~-----~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~   97 (319)
                      .+|.|.-|.|+||+++++.         +.. +.+....-+     +.. .=.++ .+-=.+.+.+++++.++..+++.+
T Consensus         3 ~il~inpgststk~a~~~~---------~~~-~~~~~~~h~~~~~~~~~-~~~~q-~~~r~~~i~~~l~~~g~~~~~l~a   70 (358)
T PRK03011          3 RILVINPGSTSTKIAVFED---------EKP-IFEETLRHSAEELEKFK-TIIDQ-YEFRKQAILDFLKEHGIDLSELDA   70 (358)
T ss_pred             EEEEEcCCCchheEEEEcC---------Cce-eeeeccccCHHHHhcCC-Cccch-HHHHHHHHHHHHHHcCCChhcceE
Confidence            5999999999999999985         443 443332210     000 00111 111244556677778887778888


Q ss_pred             EEEeecCCCCc--hh------------------------HHHHHHHHHhhCCCCceEEEeCc------------------
Q 020972           98 VCLAVSGVNHP--TD------------------------QQRILNWLRDIFPGNVRLYVHND------------------  133 (319)
Q Consensus        98 Igig~pG~~~~--~~------------------------~~~l~~~L~~~~~~~~pv~v~ND------------------  133 (319)
                      | ++-+|..++  ..                        ...+...+.+.++  +|++|.|+                  
T Consensus        71 v-~~RgG~~~~v~gG~~~v~~~~~~~l~~~~~~~~~~nl~~~~a~~~~~~~~--~p~~v~D~~~~~~~~~~a~~~~lp~i  147 (358)
T PRK03011         71 V-VGRGGLLKPIPGGTYRVNEAMLEDLKNGKYGEHASNLGAIIAYEIAKELG--IPAFIVDPVVVDEMEPVARISGLPEI  147 (358)
T ss_pred             E-EEcCCCCcccCCCCEEcCHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcC--CCEEEECCcccccCCHHHHHcCCCCc
Confidence            8 788776553  10                        1234555656665  89999999                  


Q ss_pred             --------HHHHHHhh----cC----CCCCeEEEEECccceeEeEecCCcEEeeCCCCCccCCcCChHH-------HHHH
Q 020972          134 --------ALAALASG----TM----GKLHGCVLIAGTGTIAYGFTEDGRDARAAGAGPILGDWGSGYG-------IAAQ  190 (319)
Q Consensus       134 --------a~aa~~g~----~~----g~~~~v~v~~GTGigg~gii~dG~~~raGg~Ghl~gd~Gsa~~-------iG~~  190 (319)
                              .|..+.+.    ..    ...+++++.+|||+++ +++.||++++        |..|.++|       +|+.
T Consensus       148 ~R~~gfHgln~~~va~~~a~~~g~~~~~~n~I~~hLGtGig~-gai~~Gk~id--------gs~g~agEG~~~~~R~G~l  218 (358)
T PRK03011        148 ERKSIFHALNQKAVARRVAKELGKKYEELNLIVAHLGGGISV-GAHRKGRVID--------VNNALDGEGPFSPERAGGL  218 (358)
T ss_pred             ceeecchHHhHHHHHHHHHHHhCCCcccCcEEEEEeCCCcee-eEEECCEEEe--------cCCccCCCCCcccCcccCc
Confidence                    55444332    12    2348999999999955 6889999988        22222222       3332


Q ss_pred             HHHHHH-HHhcCCCCCchhHHHHHHHcCCCChhhHHHHhccCCCh-HHH-hchhHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 020972          191 ALTAVI-RAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSW-ARI-AALVPVVVSCAEAGDEVANKILQDSVEELA  267 (319)
Q Consensus       191 ~~~~~~-~~~dg~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~-a~~~~~v~~~A~~GD~~A~~il~~a~~~Lg  267 (319)
                      ...... .+.++..                +..++.+.+...... ... ....+.|++++++||+.|+.+++++++.|+
T Consensus       219 ~~~~~~~~~~~g~~----------------s~~~l~~~l~~~~Gl~~~~gs~d~reV~~~a~~GD~~A~~ald~~~~~la  282 (358)
T PRK03011        219 PVGDLVELCFSGKY----------------TKEELKKKLVGKGGLVAYLGTNDAREVEKRIEEGDEKAKLVYEAMAYQIA  282 (358)
T ss_pred             CcHHHHHHHhcCCC----------------CHHHHHHHHHhccCcccccCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            111000 0111111                111222221111000 000 123678999999999999999999999999


Q ss_pred             HHHHHHHHHh--cccCCCcchhhcccccccEEEEcchhhhcHHHHHHHHhh
Q 020972          268 LSVKAVVQRL--SLSGEGVTYTKILKEKVPLLMENILFLLSWLVVFLKLIE  316 (319)
Q Consensus       268 ~~la~li~~l--~~~~~~~~~~~~~~~~~~ivl~Gg~~~~~~~~~~~~~~~  316 (319)
                      +.|.++++.|  ||              +.|||+||+. . ++.+++.+.+
T Consensus       283 k~I~~l~~~L~gdp--------------D~IVlgGGI~-~-~~~l~~~I~~  317 (358)
T PRK03011        283 KEIGAMAAVLKGKV--------------DAIVLTGGLA-Y-SKRLVERIKE  317 (358)
T ss_pred             HHHHHHHHHhCCCC--------------CEEEEeCccc-c-CHHHHHHHHH
Confidence            9999999999  55              5899999998 5 5677777665

>PF02685 Glucokinase: Glucokinase; InterPro: IPR003836 Glucokinases 2

Probab=99.47  E-value=2.5e-12  Score=119.98  Aligned_cols=242  Identities=16%  Similarity=0.043  Sum_probs=136.8

Q ss_pred             EEEEcCccceeEEEEeCccCCCCCCCCCC---eEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceEEEe
Q 020972           25 LGLDGGTTSTVCICMPVISMSDSLPDPLP---VLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLA  101 (319)
Q Consensus        25 lGIDiGGTk~~~~l~d~~~~~~~~~~~G~---il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Igig  101 (319)
                      |.-|||||++|+++++.         .+.   ++...+.++.+.     +.    +.+++++++++......++..++++
T Consensus         1 Lv~DIGGTn~Rlal~~~---------~~~~~~~~~~~~~~~~~~-----~s----~~~~l~~~l~~~~~~~~~p~~~~ia   62 (316)
T PF02685_consen    1 LVADIGGTNTRLALAEP---------DGGPLQLIDIRRYPSADF-----PS----FEDALADYLAELDAGGPEPDSACIA   62 (316)
T ss_dssp             EEEEEETTEEEEEEEEC---------TCGG-EEEEEEEEEGCCC-----CH----HHHHHHHHHHHTCHHHTCEEEEEEE
T ss_pred             CeEEeCcccEEEEEEEc---------CCCCccccccEEEecCCc-----CC----HHHHHHHHHHhcccCCCccceEEEE
Confidence            56799999999999998         444   355555544333     22    3444455555432222356779999


Q ss_pred             ecCCCCchh-------HHHHHHHHHhhCCCCceEEEeCcHHHHHHhh---------------cCCCCCeEEEEECcccee
Q 020972          102 VSGVNHPTD-------QQRILNWLRDIFPGNVRLYVHNDALAALASG---------------TMGKLHGCVLIAGTGTIA  159 (319)
Q Consensus       102 ~pG~~~~~~-------~~~l~~~L~~~~~~~~pv~v~NDa~aa~~g~---------------~~g~~~~v~v~~GTGigg  159 (319)
                      ++|+++...       |.--.+.|++.|+. .+|.+-||=.+.+++-               .......+++-.|||.|.
T Consensus        63 vAGPV~~~~~~lTN~~W~i~~~~l~~~lg~-~~v~liNDfeA~a~gl~~L~~~~l~~l~~g~~~~~~~~~Vig~GTGLG~  141 (316)
T PF02685_consen   63 VAGPVRDGKVRLTNLPWTIDADELAQRLGI-PRVRLINDFEAQAYGLPALDPEDLVTLQPGEPDPGGPRAVIGPGTGLGV  141 (316)
T ss_dssp             ESS-EETTCEE-SSSCCEEEHHHCHCCCT--TCEEEEEHHHHHHHHHHHHHHCCECCHCCEESSTTS-EEEEEESSSEEE
T ss_pred             EecCccCCEEEecCCCccccHHHHHHHhCC-ceEEEEcccchheeccCCCCHHHeeeccCCCCCCCCcEEEEEcCCCcEE
Confidence            999975421       11125667777763 4699999999877751               012345788999999977


Q ss_pred             EeEecCCcE--EeeCCCCCccCCcCChHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHcCCCChhhHHHHhccCCChHHH
Q 020972          160 YGFTEDGRD--ARAAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWARI  237 (319)
Q Consensus       160 ~gii~dG~~--~raGg~Ghl~gd~Gsa~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  237 (319)
                      +.++.++.-  .-..|.||+.-..-...|.  ..++. ++..-++.+       .+..++-.....+.+.+........-
T Consensus       142 a~l~~~~~~~~v~~sEgGH~~fap~~~~e~--~l~~~-l~~~~~~vs-------~E~vlSG~GL~~ly~~l~~~~~~~~~  211 (316)
T PF02685_consen  142 ALLVPDGDGYYVLPSEGGHVDFAPRTDEEA--ELLRF-LRRRYGRVS-------VERVLSGRGLENLYRFLAGERGAEPP  211 (316)
T ss_dssp             EEEEEETTEEEEEEE-GGGSB---SSHHHH--HHHHH-HHHHCTS-B-------HHHCSSHHHHHHHHHHHHCCTT--S-
T ss_pred             EEEEecCCceEeCCCccccccCCCCCHHHH--HHHHH-HHHhcCCce-------eEeecchhhHHHHHHHHHhccCCCCC
Confidence            766655543  3478999975443333332  11111 111212211       11111100112222222211100000


Q ss_pred             hchhHHHHHHHH-cCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhcccccccEEEEcchhhhcHH
Q 020972          238 AALVPVVVSCAE-AGDEVANKILQDSVEELALSVKAVVQRLSLSGEGVTYTKILKEKVPLLMENILFLLSWL  308 (319)
Q Consensus       238 a~~~~~v~~~A~-~GD~~A~~il~~a~~~Lg~~la~li~~l~~~~~~~~~~~~~~~~~~ivl~Gg~~~~~~~  308 (319)
                      ...++.|.++|. .+|+.|++.++.+.+.||..+.+++-.+.+.|.             |.|.||++.+.-+
T Consensus       212 ~~~~~~I~~~A~~~~d~~a~~al~~f~~~lg~~agdlaL~~~a~gG-------------vyiaGGI~~~~~~  270 (316)
T PF02685_consen  212 LLSAAEISAAALEGGDPLAREALDLFARILGRVAGDLALTFLARGG-------------VYIAGGIAPRLLP  270 (316)
T ss_dssp             ---HHHHHHHHHCT--HHHHHHHHHHHHHHHHHHHHHHHHHT-TCE-------------EEEE-TTGGGGHH
T ss_pred             CCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCee-------------EEEecchhhHHHH
Confidence            123677888886 578999999999999999999999998888553             9999999844433

7.1.2 from EC are found in invertebrates and microorganisms and are highly specific for glucose. These enzymes phosphorylate glucose using ATP as a donor to give glucose-6-phosphate and ADP [].; GO: 0004340 glucokinase activity, 0005524 ATP binding, 0006096 glycolysis, 0051156 glucose 6-phosphate metabolic process; PDB: 1SZ2_B 1Q18_B 2Q2R_B.

>smart00732 YqgFc Likely ribonuclease with RNase H fold

Probab=99.28  E-value=1.5e-11  Score=95.11  Aligned_cols=92  Identities=13%  Similarity=0.182  Sum_probs=69.5

Q ss_pred             EEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceEEEee
Q 020972           23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV  102 (319)
Q Consensus        23 ~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Igig~  102 (319)
                      .+||||+|+|+++++++|.         +|+++...+.++.    .+.+.+++.+.+.+++    .     ++.+|+||+
T Consensus         2 ~ilgiD~Ggt~i~~a~~d~---------~g~~~~~~~~~~~----~~~~~~~~~l~~~i~~----~-----~~~~i~Ig~   59 (99)
T smart00732        2 RVLGLDPGRKGIGVAVVDE---------TGKLADPLEVIPR----TNKEADAARLKKLIKK----Y-----QPDLIVIGL   59 (99)
T ss_pred             cEEEEccCCCeEEEEEECC---------CCCEecCEEEEEe----cCcchHHHHHHHHHHH----h-----CCCEEEEeC
Confidence            3799999999999999998         8999877665432    1334445555554443    2     467999999


Q ss_pred             cCCCCch----hHHHHHHHHHhhCCCCceEEEeCcHHHHH
Q 020972          103 SGVNHPT----DQQRILNWLRDIFPGNVRLYVHNDALAAL  138 (319)
Q Consensus       103 pG~~~~~----~~~~l~~~L~~~~~~~~pv~v~NDa~aa~  138 (319)
                      ||+++..    ...+|++.|+++++  +||.++||+++..
T Consensus        60 pg~v~g~~~~~~~~~l~~~l~~~~~--~pv~~~nDa~st~   97 (99)
T smart00732       60 PLNMNGTASRETEEAFAELLKERFN--LPVVLVDERLATV   97 (99)
T ss_pred             CcCCCCCcCHHHHHHHHHHHHHhhC--CcEEEEeCCcccc
Confidence            9987532    12789999999997  9999999999754

YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.

>COG0837 Glk Glucokinase [Carbohydrate transport and metabolism]

Probab=99.21  E-value=1.1e-08  Score=92.63  Aligned_cols=242  Identities=19%  Similarity=0.110  Sum_probs=141.5

Q ss_pred             CCCcEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceE
Q 020972           19 GGREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAV   98 (319)
Q Consensus        19 ~m~~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~I   98 (319)
                      .|....|.=|||||+.|++|+...        .+++.......+.++     .    .+.+++++++.+..  ...+...
T Consensus         3 ~~~~p~LvgDIGGTnaRfaLv~~a--------~~~~~~~~~~~~~dy-----p----sle~av~~yl~~~~--~~~~~~a   63 (320)
T COG0837           3 AMGYPRLVGDIGGTNARFALVEIA--------PAEPLQAETYACADY-----P----SLEEAVQDYLSEHT--AVAPRSA   63 (320)
T ss_pred             CCCCceEEEecCCcceEEEEeccC--------CCCccccceecccCc-----C----CHHHHHHHHHHHhh--ccCccce
Confidence            444555555999999999997752        444444433323222     2    23444555555541  2245567


Q ss_pred             EEeecCCCCchh-------HHHHHHHHHhhCCCCceEEEeCcHHHHHHhhc---------------CCCCCeEEEEECcc
Q 020972           99 CLAVSGVNHPTD-------QQRILNWLRDIFPGNVRLYVHNDALAALASGT---------------MGKLHGCVLIAGTG  156 (319)
Q Consensus        99 gig~pG~~~~~~-------~~~l~~~L~~~~~~~~pv~v~NDa~aa~~g~~---------------~g~~~~v~v~~GTG  156 (319)
                      +++++|+++..+       |.-=.+.+++.++. ..+.+-||=.+-+++..               ....+-+++--|||
T Consensus        64 ~~AiAgPv~gd~v~lTN~~W~~s~~~~r~~Lgl-~~v~liNDF~A~A~Ai~~l~~~dl~qigg~~~~~~a~~avlGPGTG  142 (320)
T COG0837          64 CFAIAGPIDGDEVRLTNHDWVFSIARMRAELGL-DHLSLINDFAAQALAIPRLGAEDLEQIGGGKPEPNAPRAVLGPGTG  142 (320)
T ss_pred             EEEEecCccCCEEeeecCcccccHHHHHHhcCC-CcEEEechHHHHHhhccccCHHHHHHhcCCCCCCCCceEEEcCCCC
Confidence            899999976432       22113445555653 46999999887666510               11235577888999


Q ss_pred             ceeEeEecCCcEEe--eCCCCCccCCcCChHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHcCCCChhhHHHHhccCCCh
Q 020972          157 TIAYGFTEDGRDAR--AAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSW  234 (319)
Q Consensus       157 igg~gii~dG~~~r--aGg~Ghl~gd~Gsa~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~  234 (319)
                      .|.++++.++.-+.  .||=||+--...+.-|+  ..++ .++...|+.+.       ++.++-.....+.+.+......
T Consensus       143 LGVa~Lv~~~~~w~~lp~EGGHvdf~P~~~~E~--~i~~-~l~~~~GrVS~-------Er~LSG~GL~~iY~al~~~~~~  212 (320)
T COG0837         143 LGVAGLVPNGGGWIPLPGEGGHVDFAPRSEREF--QILE-YLRARFGRVSA-------ERVLSGPGLVNLYRALCAADGR  212 (320)
T ss_pred             cceEEEEecCCeeEeccCCCccccCCCCCHHHH--HHHH-HHHHhcCccch-------hhhcccccHHHHHHHHHHhhCC
Confidence            98888876655343  78888964433443332  2222 12223343321       1222212222232222210000


Q ss_pred             HHHhchhHHHHHHHHc-CCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhcccccccEEEEcchh
Q 020972          235 ARIAALVPVVVSCAEA-GDEVANKILQDSVEELALSVKAVVQRLSLSGEGVTYTKILKEKVPLLMENILF  303 (319)
Q Consensus       235 ~~~a~~~~~v~~~A~~-GD~~A~~il~~a~~~Lg~~la~li~~l~~~~~~~~~~~~~~~~~~ivl~Gg~~  303 (319)
                      .........|.++|.+ +|+.|.+.++-++.+||....++.-.|..-|.             +.|.||++
T Consensus       213 ~~~~~~p~~It~~al~g~d~~a~~tl~lF~~~lG~~AGdlAL~lgarGG-------------VyiaGGI~  269 (320)
T COG0837         213 LPEDLTPAAITERALAGGDALARETLSLFCAILGRVAGDLALTLGARGG-------------VYIAGGIV  269 (320)
T ss_pred             CcccCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhHHhHHHHhhccCc-------------EEEcCCch
Confidence            0000113467777777 89999999999999999999999988887554             88999988

>PRK13318 pantothenate kinase; Reviewed

Probab=98.84  E-value=3.4e-08  Score=89.90  Aligned_cols=126  Identities=18%  Similarity=0.126  Sum_probs=79.5

Q ss_pred             EEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceEEEee-
Q 020972           24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV-  102 (319)
Q Consensus        24 ~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Igig~-  102 (319)
                      +|+||+|+|++|++++|.          ++++.+.+.++...  .+++++.    +.+.++++..+.+..++.+|+++. 
T Consensus         2 iL~IDIGnT~iK~al~d~----------g~i~~~~~~~t~~~--~~~~~~~----~~l~~l~~~~~~~~~~i~~I~issV   65 (258)
T PRK13318          2 LLAIDVGNTNTVFGLYEG----------GKLVAHWRISTDSR--RTADEYG----VWLKQLLGLSGLDPEDITGIIISSV   65 (258)
T ss_pred             EEEEEECCCcEEEEEEEC----------CEEEEEEEEeCCCC--CCHHHHH----HHHHHHHHHcCCCcccCceEEEEEe
Confidence            799999999999999984          77777766644322  3455544    344555565555445788999998 


Q ss_pred             -cCCCCchhH--------HH-HHHHHHhhCCCCceEEEeCc--------HHHHHHhhcCCCCCeEEEEECccceeEeEe-
Q 020972          103 -SGVNHPTDQ--------QR-ILNWLRDIFPGNVRLYVHND--------ALAALASGTMGKLHGCVLIAGTGTIAYGFT-  163 (319)
Q Consensus       103 -pG~~~~~~~--------~~-l~~~L~~~~~~~~pv~v~ND--------a~aa~~g~~~g~~~~v~v~~GTGigg~gii-  163 (319)
                       |+..+....        .+ +....+..++  +|+.++|+        +++.+..+... ++.+++.+||++. ..++ 
T Consensus        66 vp~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--l~~~y~np~~lG~DR~a~~~aa~~~~~-~~~ivid~GTA~t-~d~v~  141 (258)
T PRK13318         66 VPSVMHSLERMCRKYFNIEPLVVVGPGVKTG--INIKVDNPKEVGADRIVNAVAAYELYG-GPLIVVDFGTATT-FDVVS  141 (258)
T ss_pred             cCchHHHHHHHHHHHhCCCCeEEECCCcCCC--CceecCChhhcchHHHHHHHHHHHHcC-CCEEEEEcCCceE-EEEEc
Confidence             554322110        01 1111122233  78999999        66555444333 3899999999995 4566 


Q ss_pred             cCCcEE
Q 020972          164 EDGRDA  169 (319)
Q Consensus       164 ~dG~~~  169 (319)
                      .+|+..
T Consensus       142 ~~g~~~  147 (258)
T PRK13318        142 AKGEYL  147 (258)
T ss_pred             CCCcEE
Confidence            566543

>PRK00976 hypothetical protein; Provisional

Probab=98.70  E-value=6.5e-06  Score=76.51  Aligned_cols=53  Identities=11%  Similarity=0.016  Sum_probs=48.5

Q ss_pred             hhHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhcccccccEEEEcchhhhcH
Q 020972          240 LVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEGVTYTKILKEKVPLLMENILFLLSW  307 (319)
Q Consensus       240 ~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~la~li~~l~~~~~~~~~~~~~~~~~~ivl~Gg~~~~~~  307 (319)
                      ..+.++++|++||+.|+++++++++.|+..++++++.+||              +.|||+||++ ...
T Consensus       225 ~~~eIfeaA~~GD~~A~~aid~~~~~LA~~IAnLi~llDP--------------e~IVLGGGVS-~~~  277 (326)
T PRK00976        225 TKEELLEAYEKGDEKAKLAIDTLALFVAMEIASLLLLNPE--------------DNVVLAGSVG-EMD  277 (326)
T ss_pred             CHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhcCC--------------CEEEEcCccc-cCc
Confidence            3678999999999999999999999999999999999998              5899999998 554

>PLN02914 hexokinase

Probab=98.67  E-value=3.4e-05  Score=75.93  Aligned_cols=136  Identities=15%  Similarity=0.074  Sum_probs=83.6

Q ss_pred             cccCCCcEEEEEEcCccceeEEEEeCccCCCCCCCCCC---eEEE--EecC-CCCccccCHHHHHHHHHHHHHHHHHHcC
Q 020972           16 EESGGREVILGLDGGTTSTVCICMPVISMSDSLPDPLP---VLAR--AAAG-CSNHNSVGEDAARETIEKVMADALLKSG   89 (319)
Q Consensus        16 ~~~~m~~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~---il~~--~~~~-~~~~~~~~~~~~~~~i~~~i~~~l~~~~   89 (319)
                      ++....+.++++|+|||+.|+.++++         .|+   +...  .+.+ |......+.+++++-|++.|.+++++..
T Consensus        89 PtG~E~G~fLAlDlGGTNfRV~~V~L---------~g~~~~~~~~~~~~~~ip~~l~~gt~~eLFdfIA~~i~~fl~~~~  159 (490)
T PLN02914         89 PSGNEKGLFYALDLGGTNFRVLRVQL---------GGKDERVIATEFEQVSIPQELMFGTSEELFDFIASGLANFVAKEG  159 (490)
T ss_pred             CCCCeeeEEEEEecCCceEEEEEEEe---------cCCCCceeeeeEEEecCChhhccCCHHHHHHHHHHHHHHHHHhcc
Confidence            33444668999999999999999998         442   2221  1211 2122223568899999999999998764


Q ss_pred             C----Cccc--cceEEEeecCCCCc-h----------------hH----HHHHHHHHhh-CCCCceEEEeCcHHHHHHhh
Q 020972           90 S----NRSA--VRAVCLAVSGVNHP-T----------------DQ----QRILNWLRDI-FPGNVRLYVHNDALAALASG  141 (319)
Q Consensus        90 ~----~~~~--i~~Igig~pG~~~~-~----------------~~----~~l~~~L~~~-~~~~~pv~v~NDa~aa~~g~  141 (319)
                      .    +..+  -.|+.+++|=--.. .                .+    .-|.+.|+++ ++ -..+.|-||....+++.
T Consensus       160 ~~~~~~~~~~l~LGfTFSFP~~Q~si~~g~Li~WTKGF~~~gv~G~DVv~lL~~Al~r~~l~-v~v~AivNDTVGTL~a~  238 (490)
T PLN02914        160 GKFHLPEGRKREIGFTFSFPVKQTSIDSGILMKWTKGFAVSGTAGKDVVACLNEAMERQGLD-MRVSALVNDTVGTLAGA  238 (490)
T ss_pred             ccccCCccccccceeeEeeeeecCCCCceEEEEeccccccCCccCchHHHHHHHHHHHcCCC-ceEEEEEEcCHHHHHhh
Confidence            1    1111  24455555532110 0                01    2355555443 22 13577899999887765


Q ss_pred             c-CCCCCeEEEEECccceeEe
Q 020972          142 T-MGKLHGCVLIAGTGTIAYG  161 (319)
Q Consensus       142 ~-~g~~~~v~v~~GTGigg~g  161 (319)
                      . ...+..+-+++|||..++-
T Consensus       239 aY~~~~~~iGlIlGTGtNacY  259 (490)
T PLN02914        239 RYWDDDVMVAVILGTGTNACY  259 (490)
T ss_pred             hcCCCCceEEEEEECCeeeEE
Confidence            4 4444678899999998863

>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative

Probab=98.56  E-value=1.3e-05  Score=72.60  Aligned_cols=206  Identities=18%  Similarity=0.228  Sum_probs=107.9

Q ss_pred             EEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceEEEee
Q 020972           23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV  102 (319)
Q Consensus        23 ~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Igig~  102 (319)
                      |++|||+|.|++|++++|          +|+++.+.+.++..    .    ++.+.+.+++++++.+.++.++.+|++  
T Consensus         1 ~~lGIDiGtts~K~vl~d----------~g~il~~~~~~~~~----~----~~~~~~~l~~~~~~~~~~~~~i~~i~~--   60 (248)
T TIGR00241         1 ISLGIDSGSTTTKMVLME----------DGKVIGYKWLDTTP----V----IEETARAILEALKEAGIGLEPIDKIVA--   60 (248)
T ss_pred             CEEEEEcChhheEEEEEc----------CCEEEEEEEecCCC----C----HHHHHHHHHHHHHHcCCChhheeEEEE--
Confidence            589999999999999997          47888888763321    2    334456677777777776667776544  


Q ss_pred             cCCCCchhHHHHHHHHHhhCCCCceEEEeCcHHHHHHhh--cCCCCCeEEEEEC-ccceeEeEecCCcEEeeCCCCCccC
Q 020972          103 SGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASG--TMGKLHGCVLIAG-TGTIAYGFTEDGRDARAAGAGPILG  179 (319)
Q Consensus       103 pG~~~~~~~~~l~~~L~~~~~~~~pv~v~NDa~aa~~g~--~~g~~~~v~v~~G-TGigg~gii~dG~~~raGg~Ghl~g  179 (319)
                      .|.....  .+        +.  .+..  +...+-+.|+  ..+..+. ++-+| ..+ -+-.+.+|++...     ..-
T Consensus        61 Tg~~~~~--v~--------~~--~~~~--~ei~~~~~g~~~~~~~~~~-vidiGgqd~-k~i~~~~g~~~~~-----~~n  119 (248)
T TIGR00241        61 TGYGRHK--VG--------FA--DKIV--TEISCHGKGANYLAPEARG-VIDIGGQDS-KVIKIDDGKVDDF-----TMN  119 (248)
T ss_pred             ECCCccc--cc--------cc--CCce--EEhhHHHHHHHHHCCCCCE-EEEecCCee-EEEEECCCcEeee-----eec
Confidence            6653221  00        12  2222  2333333332  2333344 44444 444 3334446665410     001


Q ss_pred             CcCChHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHcCCCChhhHHHHhccCCChHHHh----chh-HHHHHHHHcCCHH
Q 020972          180 DWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWARIA----ALV-PVVVSCAEAGDEV  254 (319)
Q Consensus       180 d~Gsa~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a----~~~-~~v~~~A~~GD~~  254 (319)
                      +..++   |                ...+.+.+.+.+++ +.+++-........+..+.    -++ ..++....+|.+ 
T Consensus       120 ~~ca~---G----------------tg~f~e~~a~~l~~-~~~e~~~~~~~~~~~~~~~~~c~vf~~s~vi~~l~~g~~-  178 (248)
T TIGR00241       120 DKCAA---G----------------TGRFLEVTARRLGV-SVEELGSLAEKADRKAKISSMCTVFAESELISLLAAGVK-  178 (248)
T ss_pred             Ccccc---c----------------ccHHHHHHHHHcCC-CHHHHHHHHhcCCCCCCcCCEeEEEechhHHHHHHCCCC-
Confidence            11000   0                00122233334443 2222222111100111111    111 345566667764 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhcccccccEEEEcchh
Q 020972          255 ANKILQDSVEELALSVKAVVQRLSLSGEGVTYTKILKEKVPLLMENILF  303 (319)
Q Consensus       255 A~~il~~a~~~Lg~~la~li~~l~~~~~~~~~~~~~~~~~~ivl~Gg~~  303 (319)
                      ..+++....+.++..+..+++.+++             +.++++.||++
T Consensus       179 ~~di~~~~~~~va~~i~~~~~~~~~-------------~~~Vvl~GGva  214 (248)
T TIGR00241       179 KEDILAGVYESIAERVAEMLQRLKI-------------EAPIVFTGGVS  214 (248)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCC-------------CCCEEEECccc
Confidence            4688888888999999988877765             12799999998

This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.

>PLN02405 hexokinase

Probab=98.48  E-value=6.9e-05  Score=73.97  Aligned_cols=136  Identities=17%  Similarity=0.117  Sum_probs=85.1

Q ss_pred             cccCCCcEEEEEEcCccceeEEEEeCccCCCCCCCCC---CeEE----EEecCCCCccccCHHHHHHHHHHHHHHHHHHc
Q 020972           16 EESGGREVILGLDGGTTSTVCICMPVISMSDSLPDPL---PVLA----RAAAGCSNHNSVGEDAARETIEKVMADALLKS   88 (319)
Q Consensus        16 ~~~~m~~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G---~il~----~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~   88 (319)
                      ++....+.++++|+|||+.|+.++.+         .|   .++.    ...+|. .....+.+++++-|++.+.+++++.
T Consensus        89 PtG~E~G~flAlDlGGTNfRV~~V~L---------~g~~~~~~~~~~~~~~ip~-~~~~gt~~~LFdfIA~~i~~fl~~~  158 (497)
T PLN02405         89 PSGDEKGLFYALDLGGTNFRVLRVLL---------GGKDGRVVKQEFEEVSIPP-HLMTGSSDALFDFIAAALAKFVATE  158 (497)
T ss_pred             CCCCcceeEEEEecCCceEEEEEEEE---------cCCCCceeEEEEEEeecCh-hhccCCHHHHHHHHHHHHHHHHHhc
Confidence            44445678999999999999999998         44   2222    122222 2222467889999999999999876


Q ss_pred             CCC----c--cccceEEEeecCCCCc-h----------------hHHHHHHHHHhhC---C-CCceEEEeCcHHHHHHhh
Q 020972           89 GSN----R--SAVRAVCLAVSGVNHP-T----------------DQQRILNWLRDIF---P-GNVRLYVHNDALAALASG  141 (319)
Q Consensus        89 ~~~----~--~~i~~Igig~pG~~~~-~----------------~~~~l~~~L~~~~---~-~~~pv~v~NDa~aa~~g~  141 (319)
                      +..    .  ..-.|+.+++|=--.. .                .+.++.+.|++.+   + .-..+.|-||....+++.
T Consensus       159 ~~~~~~~~~~~l~LGfTFSFPv~Qtsi~~g~Li~WTKGF~~~~~vG~DVv~lL~~Al~r~~l~v~v~AlvNDTVGTL~a~  238 (497)
T PLN02405        159 GEDFHLPPGRQRELGFTFSFPVKQTSISSGTLIKWTKGFSIDDAVGQDVVGELTKAMERVGLDMRVSALVNDTIGTLAGG  238 (497)
T ss_pred             ccccccCcccccccceeEeeeeccCCCCceEEEEeccccccCCccCchHHHHHHHHHHHcCCCceEEEEEecCHHHHHHh
Confidence            421    1  1224555555532110 0                0123444444332   2 113588999999887765


Q ss_pred             c-CCCCCeEEEEECccceeEe
Q 020972          142 T-MGKLHGCVLIAGTGTIAYG  161 (319)
Q Consensus       142 ~-~g~~~~v~v~~GTGigg~g  161 (319)
                      . ...+..+-+++|||..++-
T Consensus       239 aY~~~~~~iG~IlGTGtNacY  259 (497)
T PLN02405        239 RYYNPDVVAAVILGTGTNAAY  259 (497)
T ss_pred             hcCCCCceEEEEEeCCeeeEE
Confidence            4 4445678899999998863

>PRK13321 pantothenate kinase; Reviewed

Probab=98.48  E-value=4.7e-06  Score=75.82  Aligned_cols=119  Identities=17%  Similarity=0.086  Sum_probs=73.9

Q ss_pred             EEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceEEEee
Q 020972           23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV  102 (319)
Q Consensus        23 ~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Igig~  102 (319)
                      ++|+||+|+|+++++++|.         + +++.+.+.++...  .+.+++...+.+    ++++.+.+.+++.+++++.
T Consensus         1 MiL~IDIGnT~ik~gl~~~---------~-~i~~~~~~~T~~~--~~~~~~~~~l~~----l~~~~~~~~~~i~~i~vss   64 (256)
T PRK13321          1 MLLLIDVGNTNIKLGVFDG---------D-RLLRSFRLPTDKS--RTSDELGILLLS----LFRHAGLDPEDIRAVVISS   64 (256)
T ss_pred             CEEEEEECCCeEEEEEEEC---------C-EEEEEEEEecCCC--CCHHHHHHHHHH----HHHHcCCChhhCCeEEEEe
Confidence            3799999999999999996         4 7777666644322  355665555555    4444454455788888887


Q ss_pred             cCCCCchhHHHHHHHHH-------------------hhCCCCceEEEeCc--HHHHHHhhcCCCCCeEEEEECccceeEe
Q 020972          103 SGVNHPTDQQRILNWLR-------------------DIFPGNVRLYVHND--ALAALASGTMGKLHGCVLIAGTGTIAYG  161 (319)
Q Consensus       103 pG~~~~~~~~~l~~~L~-------------------~~~~~~~pv~v~ND--a~aa~~g~~~g~~~~v~v~~GTGigg~g  161 (319)
                        ++ +.....+...++                   ..+.  .|..+.+|  +++.+..+....++.+++.+||=+ ..=
T Consensus        65 --Vv-p~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~y~--~P~~lG~DR~a~~~aa~~~~~~~~~lvid~GTA~-T~d  138 (256)
T PRK13321         65 --VV-PPLNYSLESACKRYFGIKPLFVGPGIKTGLKIRYD--NPREVGADRIVNAVAARRLYPDRNLIVVDFGTAT-TFD  138 (256)
T ss_pred             --ec-ccHHHHHHHHHHHHhCCCeEEECCCCCCCcccccC--ChhhccHHHHHHHHHHHHHcCCCCEEEEECCCce-EEE
Confidence              33 322222332222                   2233  57788999  554443343333489999999988 443


Q ss_pred             Ee
Q 020972          162 FT  163 (319)
Q Consensus       162 ii  163 (319)
                      ++
T Consensus       139 ~v  140 (256)
T PRK13321        139 CV  140 (256)
T ss_pred             EE
Confidence            44

>PTZ00107 hexokinase; Provisional

Probab=98.47  E-value=0.00018  Score=70.61  Aligned_cols=139  Identities=16%  Similarity=0.154  Sum_probs=83.2

Q ss_pred             cccCCCcEEEEEEcCccceeEEEEeCccCCCCCCCCCC-eE--EEEe--cCCCCc--------cccCHHHHHHHHHHHHH
Q 020972           16 EESGGREVILGLDGGTTSTVCICMPVISMSDSLPDPLP-VL--ARAA--AGCSNH--------NSVGEDAARETIEKVMA   82 (319)
Q Consensus        16 ~~~~m~~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~-il--~~~~--~~~~~~--------~~~~~~~~~~~i~~~i~   82 (319)
                      ++....+.+|++|+|||+.|++++.+         .|. ..  .+.+  .+..-.        ...+.+++++.|++.|.
T Consensus        68 PtG~E~G~fLAlDlGGTN~RV~~V~L---------~g~~~~~~~~~~~~ip~~~~~~~~~~~~k~~t~~~lFd~IA~~i~  138 (464)
T PTZ00107         68 PTGKEKGVYYAIDFGGTNFRAVRVSL---------RGGGKMERTQSKFSLPKSALLGEKGLLDKKATATDLFDHIAKSIK  138 (464)
T ss_pred             CCCCccceEEEEecCCceEEEEEEEe---------CCCCceeeEEEEEeCCHHHhccccccccccCCHHHHHHHHHHHHH
Confidence            34444678999999999999999998         443 11  1111  111000        01156789999999999


Q ss_pred             HHHHHcCC--Cc--cccceEEEeecCCCCc--------------------h--hHHHHHHHHHhhC---C-CCceEEEeC
Q 020972           83 DALLKSGS--NR--SAVRAVCLAVSGVNHP--------------------T--DQQRILNWLRDIF---P-GNVRLYVHN  132 (319)
Q Consensus        83 ~~l~~~~~--~~--~~i~~Igig~pG~~~~--------------------~--~~~~l~~~L~~~~---~-~~~pv~v~N  132 (319)
                      +++++...  ..  .--.|+.+++|=--..                    .  .+.++.+.|++.+   + ....+.|-|
T Consensus       139 ~fl~~~~~~~~~~~~l~lGfTFSFP~~Q~si~~g~Li~WtKGF~~~~~~~~~v~G~DV~~lL~~Al~r~~l~v~v~AivN  218 (464)
T PTZ00107        139 KMMEENGDPEDLNKPVPVGFTFSFPCTQLSVNNAILIDWTKGFETGRATNDPVEGKDVGELLNDAFKRNNVPANVVAVLN  218 (464)
T ss_pred             HHHHhccccccccccccceeEEeeeeecccCCceEEEEeccceeeccCCCCCccCchHHHHHHHHHHHcCCCceEEEEEE
Confidence            99987651  11  1124555555532100                    0  0123444444333   2 113688999


Q ss_pred             cHHHHHHhhc-CC----CCCeEEEEECccceeEeEec
Q 020972          133 DALAALASGT-MG----KLHGCVLIAGTGTIAYGFTE  164 (319)
Q Consensus       133 Da~aa~~g~~-~g----~~~~v~v~~GTGigg~gii~  164 (319)
                      |+.+.+++.. ..    .+..+-+++|||..++ ++.
T Consensus       219 DTVgTL~a~ay~~~~~~~~~~iGlIlGTG~Nac-Y~E  254 (464)
T PTZ00107        219 DTVGTLISCAYQKPKNTPPCQVGVIIGTGSNAC-YFE  254 (464)
T ss_pred             cCHHHHHHHHhcCcCCCCCceEEEEEeccccce-eee
Confidence            9998887654 33    3457889999999886 443

>PLN02596 hexokinase-like

Probab=98.40  E-value=0.00038  Score=68.63  Aligned_cols=137  Identities=12%  Similarity=0.008  Sum_probs=83.5

Q ss_pred             cccCCCcEEEEEEcCccceeEEEEeCccCCCCCCCCCC---eEEE--EecC-CCCccccCHHHHHHHHHHHHHHHHHHcC
Q 020972           16 EESGGREVILGLDGGTTSTVCICMPVISMSDSLPDPLP---VLAR--AAAG-CSNHNSVGEDAARETIEKVMADALLKSG   89 (319)
Q Consensus        16 ~~~~m~~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~---il~~--~~~~-~~~~~~~~~~~~~~~i~~~i~~~l~~~~   89 (319)
                      ++....+.+|++|+|||+.|+.++++         .|+   +...  ...+ +......+.+++++-|++.|.+++++.+
T Consensus        90 PtG~E~G~yLAlDlGGTNfRV~~V~L---------~g~~~~~~~~~~~~~~Ip~~l~~~t~~eLFd~IA~~i~~fl~~~~  160 (490)
T PLN02596         90 PSGDEKGLYYGLNLRGSNFLLLRARL---------GGKNEPISDLYREEISIPSNVLNGTSQELFDYIALELAKFVAEHP  160 (490)
T ss_pred             CCCCcceEEEEEeeCCceEEEEEEEE---------cCCCCceEEEEEEEecCChHhhcCCHHHHHHHHHHHHHHHHHhhc
Confidence            34444678999999999999999998         443   1211  1111 1111123567899999999999997754


Q ss_pred             CCc------cccceEEEeecC--------CC-------Cc-hhHHHH----HHHHHhhCCCCceEEEeCcHHHHHHhhc-
Q 020972           90 SNR------SAVRAVCLAVSG--------VN-------HP-TDQQRI----LNWLRDIFPGNVRLYVHNDALAALASGT-  142 (319)
Q Consensus        90 ~~~------~~i~~Igig~pG--------~~-------~~-~~~~~l----~~~L~~~~~~~~pv~v~NDa~aa~~g~~-  142 (319)
                      ...      ..-.|+.+++|=        ..       -. ..+.++    .+.++++-..-..+.|.||....+++.+ 
T Consensus       161 ~~~~~~~~~~l~lGfTFSFP~~Q~si~~G~Li~WKgF~~~~~vG~Dvv~lL~~Al~r~~l~v~v~AivNDTVgTL~a~aY  240 (490)
T PLN02596        161 GDEADTPERVKKLGFTVSYPVDQAAASSGSAIKWKSFSADDTVGKALVNDINRALEKHGLKIRVFALVDDTIGNLAGGRY  240 (490)
T ss_pred             cccccCcccccccceEEeeeeeecCCCCEEEEEeccccCCCccCcHHHHHHHHHHHhcCCCceEEEEEEcCHHHHHhhhc
Confidence            321      122456666662        10       00 012344    4444433111136889999998887654 


Q ss_pred             CCCCCeEEEEECccceeEe
Q 020972          143 MGKLHGCVLIAGTGTIAYG  161 (319)
Q Consensus       143 ~g~~~~v~v~~GTGigg~g  161 (319)
                      ...+..+-+++|||..++-
T Consensus       241 ~~~~~~iG~I~GTGtNacY  259 (490)
T PLN02596        241 YNKDTVAAVTLGMGTNAAY  259 (490)
T ss_pred             CCCCeEEEEEEecccceEE
Confidence            3444567799999998863

>PLN02362 hexokinase

Probab=98.39  E-value=0.00049  Score=68.24  Aligned_cols=138  Identities=15%  Similarity=0.113  Sum_probs=85.6

Q ss_pred             cccCCCcEEEEEEcCccceeEEEEeCccCCCCCCCCC---CeE----EEEecCCCCccccCHHHHHHHHHHHHHHHHHHc
Q 020972           16 EESGGREVILGLDGGTTSTVCICMPVISMSDSLPDPL---PVL----ARAAAGCSNHNSVGEDAARETIEKVMADALLKS   88 (319)
Q Consensus        16 ~~~~m~~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G---~il----~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~   88 (319)
                      ++....+.++++|+|||+.|++++++         .|   .++    .+..+|. .......+++++-|++.|.+++++.
T Consensus        89 PtG~E~G~fLAlDlGGTNfRV~~V~L---------~g~~~~~~~~~~~~~~Ip~-~l~~~~~~eLFd~IA~~i~~fl~~~  158 (509)
T PLN02362         89 PTGSEIGTYYALDLGGTNFRVLRVQL---------GGQRSSILSQDVERHPIPQ-HLMNSTSEVLFDFIASSLKQFVEKE  158 (509)
T ss_pred             CCCCcceeEEEEecCCceEEEEEEEe---------cCCCcceeeceeEEEecCh-hhccCCHHHHHHHHHHHHHHHHHhc
Confidence            44445678999999999999999998         43   222    1233332 2222467889999999999999886


Q ss_pred             CCCc------cccceEEEeecCCCCc-h----------------hHHHHHHHHHhhC---C-CCceEEEeCcHHHHHHhh
Q 020972           89 GSNR------SAVRAVCLAVSGVNHP-T----------------DQQRILNWLRDIF---P-GNVRLYVHNDALAALASG  141 (319)
Q Consensus        89 ~~~~------~~i~~Igig~pG~~~~-~----------------~~~~l~~~L~~~~---~-~~~pv~v~NDa~aa~~g~  141 (319)
                      ....      ..-.|+.+++|=--.. .                .+.++.+.|++.+   + .-..+.|-||....+++.
T Consensus       159 ~~~~~~~~~~~l~LGfTFSFPv~Q~si~~g~Li~WtKGF~~~~v~G~DVv~lL~~Al~r~~l~v~v~AlvNDTVgTL~a~  238 (509)
T PLN02362        159 ENGSEFSQVRRRELGFTFSFPVKQTSISSGILIKWTKGFAISDMVGKDVAECLQGALNRRGLDMRVAALVNDTVGTLALG  238 (509)
T ss_pred             CccccccccccccceeEEeeeeccCCCCceEEEEeccccccCcccCchHHHHHHHHHHHcCCCcEEEEEEEcCHHHHHhh
Confidence            5321      1234555666542110 0                0124444444332   2 113577889999887765


Q ss_pred             c-CCCCCeEEEEECccceeEeEec
Q 020972          142 T-MGKLHGCVLIAGTGTIAYGFTE  164 (319)
Q Consensus       142 ~-~g~~~~v~v~~GTGigg~gii~  164 (319)
                      . ...+..+-+++|||..++ ++.
T Consensus       239 aY~~~~~~iG~IlGTGtNac-Y~E  261 (509)
T PLN02362        239 HYHDPDTVAAVIIGTGTNAC-YLE  261 (509)
T ss_pred             hcCCCCceEEEEEECCccce-Eee
Confidence            4 334456789999999886 543

>TIGR01312 XylB D-xylulose kinase

Probab=98.36  E-value=3.5e-07  Score=90.35  Aligned_cols=101  Identities=13%  Similarity=0.159  Sum_probs=78.6

Q ss_pred             EEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCC------ccccCHHHHHHHHHHHHHHHHHHcCCCccccceE
Q 020972           25 LGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSN------HNSVGEDAARETIEKVMADALLKSGSNRSAVRAV   98 (319)
Q Consensus        25 lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~------~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~I   98 (319)
                      ||||+|.|++|++++|.         +|+++.+.+.+...      ..+.+++++++.+.+++++++++++..+.+|.+|
T Consensus         1 lgIDiGtt~ik~~l~d~---------~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~l~~~i~~~~~~~~~~~~~I~gI   71 (481)
T TIGR01312         1 LGIDLGTSGVKALLVDE---------QGEVIASGSAPHTVISPHPGWSEQDPEDWWDATEEAIKELLEQASEMGQDIKGI   71 (481)
T ss_pred             CceeecCcceEEEEECC---------CCCEEEEEeecccccCCCCCCeeeCHHHHHHHHHHHHHHHHHhcCCCcccEEEE
Confidence            68999999999999999         99999887764321      1135788999999999999999988877889999


Q ss_pred             EEe--ecCCC--Cchh----------HHHH---HHHHHhhCCCCceEEEeCcHHH
Q 020972           99 CLA--VSGVN--HPTD----------QQRI---LNWLRDIFPGNVRLYVHNDALA  136 (319)
Q Consensus        99 gig--~pG~~--~~~~----------~~~l---~~~L~~~~~~~~pv~v~NDa~a  136 (319)
                      |++  .||++  +.+.          ..+.   .+.|++.++  .|++++|+++.
T Consensus        72 gvs~~~~g~v~~d~~g~~l~~~i~W~D~r~~~~~~~l~~~~~--~~~~~~~~g~~  124 (481)
T TIGR01312        72 GISGQMHGLVLLDANGEVLRPAILWNDTRTAQECEELEAELG--DERVLEITGNL  124 (481)
T ss_pred             EEecCCceeEEECCCcCCCccchhhhccchHHHHHHHHHhcC--HhHHHHHHCCC
Confidence            999  99987  5322          1122   666777775  67778888764

D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.

>PRK00047 glpK glycerol kinase; Provisional

Probab=98.28  E-value=3.7e-06  Score=83.66  Aligned_cols=77  Identities=22%  Similarity=0.212  Sum_probs=62.1

Q ss_pred             CCCcEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecC------CCCccccCHHHHHHHHHHHHHHHHHHcCCCc
Q 020972           19 GGREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAG------CSNHNSVGEDAARETIEKVMADALLKSGSNR   92 (319)
Q Consensus        19 ~m~~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~------~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~   92 (319)
                      .|..|+||||+|+|++|++++|.         +|+++.+.+.+      .....+.+++.+++.+.+.+++++++++.++
T Consensus         2 ~m~~~~lgiD~GTts~Ka~l~d~---------~g~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~   72 (498)
T PRK00047          2 MMKKYILALDQGTTSSRAIIFDH---------DGNIVSVAQKEFTQIFPQPGWVEHDPNEIWASQLSVIAEALAKAGISP   72 (498)
T ss_pred             CccCEEEEEecCCCceEEEEECC---------CCCEEEEEeeeccccCCCCCeEeeCHHHHHHHHHHHHHHHHHHcCCCh
Confidence            45569999999999999999999         99999886532      1122245789999999999999999888777


Q ss_pred             cccceEEEeecC
Q 020972           93 SAVRAVCLAVSG  104 (319)
Q Consensus        93 ~~i~~Igig~pG  104 (319)
                      .+|.+||++.-+
T Consensus        73 ~~I~~Igis~~~   84 (498)
T PRK00047         73 DQIAAIGITNQR   84 (498)
T ss_pred             hHeeEEEEecCc
Confidence            789888876554

>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related

Probab=98.23  E-value=7.9e-06  Score=73.56  Aligned_cols=74  Identities=22%  Similarity=0.286  Sum_probs=60.5

Q ss_pred             EEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCC------CccccCHHHHHHHHHHHHHHHHHHcCCCccccc
Q 020972           23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCS------NHNSVGEDAARETIEKVMADALLKSGSNRSAVR   96 (319)
Q Consensus        23 ~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~------~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~   96 (319)
                      |+||||+|.|++|++++|.         +|+++...+.+..      ...+.+++++++.+.+++++++++++..+.+|.
T Consensus         1 y~lgiDiGTts~K~~l~d~---------~g~iv~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~~I~   71 (245)
T PF00370_consen    1 YYLGIDIGTTSVKAVLFDE---------DGKIVASASRPYPYYTPEPGWAEQDPDEIWEAICEALKELLSQAGIDPEQIK   71 (245)
T ss_dssp             EEEEEEECSSEEEEEEEET---------TSCEEEEEEEEETEBCSSTTEEEE-HHHHHHHHHHHHHHHHHHCTSCGGGEE
T ss_pred             CEEEEEEcccceEEEEEeC---------CCCEEEEEEEeeeeccccccccccChHHHHHHHHHHHHHHHhhcCcccceeE
Confidence            7999999999999999998         9999987765321      122468999999999999999999988888999


Q ss_pred             eEEEeecCC
Q 020972           97 AVCLAVSGV  105 (319)
Q Consensus        97 ~Igig~pG~  105 (319)
                      +|++..-+.
T Consensus        72 aI~is~~~~   80 (245)
T PF00370_consen   72 AIGISGQGH   80 (245)
T ss_dssp             EEEEEE-SS
T ss_pred             EEEeccccC
Confidence            988876553

These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....

>PRK10939 autoinducer-2 (AI-2) kinase; Provisional

Probab=98.14  E-value=1.2e-05  Score=80.35  Aligned_cols=76  Identities=18%  Similarity=0.170  Sum_probs=61.4

Q ss_pred             CCcEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCC--------CCccccCHHHHHHHHHHHHHHHHHHcCCC
Q 020972           20 GREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGC--------SNHNSVGEDAARETIEKVMADALLKSGSN   91 (319)
Q Consensus        20 m~~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~--------~~~~~~~~~~~~~~i~~~i~~~l~~~~~~   91 (319)
                      ||.|+||||+|.|++|++++|.         +|+++...+.+.        ....+++++++++.+.+.+++++++++.+
T Consensus         1 ~m~~~lgID~GTts~Ka~l~d~---------~G~~l~~~~~~~~~~~~~~~~g~~Eqd~~~~w~~~~~~l~~~~~~~~~~   71 (520)
T PRK10939          1 SMSYLMALDAGTGSIRAVIFDL---------NGNQIAVGQAEWRHLAVPDVPGSMEFDLEKNWQLACQCIRQALQKAGIP   71 (520)
T ss_pred             CCcEEEEEecCCCceEEEEECC---------CCCEEEEEeccccccCCCCCCCCeeECHHHHHHHHHHHHHHHHHHcCCC
Confidence            3469999999999999999999         999998765431        12224678999999999999999888777


Q ss_pred             ccccceEEEeecC
Q 020972           92 RSAVRAVCLAVSG  104 (319)
Q Consensus        92 ~~~i~~Igig~pG  104 (319)
                      +.+|.+|+++..+
T Consensus        72 ~~~I~aI~~s~~~   84 (520)
T PRK10939         72 ASDIAAVSATSMR   84 (520)
T ss_pred             ccceEEEEEECCc
Confidence            7789998887553

>PRK04123 ribulokinase; Provisional

Probab=98.09  E-value=1.5e-05  Score=80.24  Aligned_cols=76  Identities=22%  Similarity=0.240  Sum_probs=61.1

Q ss_pred             CCcEEEEEEcCccceeEEEEe-CccCCCCCCCCCCeEEEEecCCC------------CccccCHHHHHHHHHHHHHHHHH
Q 020972           20 GREVILGLDGGTTSTVCICMP-VISMSDSLPDPLPVLARAAAGCS------------NHNSVGEDAARETIEKVMADALL   86 (319)
Q Consensus        20 m~~~~lGIDiGGTk~~~~l~d-~~~~~~~~~~~G~il~~~~~~~~------------~~~~~~~~~~~~~i~~~i~~~l~   86 (319)
                      |+.|+||||+|.|++|++++| .         +|+++.+.+.+..            ...+++++++++.+.+.++++++
T Consensus         1 ~~~~~lgiD~GTts~Ka~l~d~~---------~g~~~~~~~~~~~~~~~~~~~~~~~g~~Eqdp~~~w~~~~~~i~~~~~   71 (548)
T PRK04123          1 MMAYVIGLDFGTDSVRALLVDCA---------TGEELATAVVEYPHWVKGRYLDLPPNQALQHPLDYIESLEAAIPAVLK   71 (548)
T ss_pred             CCcEEEEEecCCCceEEEEEECC---------CCcEeEEEEeeccccccccccCCCCCceeeCHHHHHHHHHHHHHHHHH
Confidence            667999999999999999999 6         8999887654322            11245788999999999999999


Q ss_pred             HcCCCccccceEEEeecC
Q 020972           87 KSGSNRSAVRAVCLAVSG  104 (319)
Q Consensus        87 ~~~~~~~~i~~Igig~pG  104 (319)
                      +++.++.+|.+||++.-|
T Consensus        72 ~~~~~~~~I~aIgis~~~   89 (548)
T PRK04123         72 EAGVDPAAVVGIGVDFTG   89 (548)
T ss_pred             HcCCChhhEEEEEEeccc
Confidence            888777789888876543

>TIGR01311 glycerol_kin glycerol kinase

Probab=98.08  E-value=1.7e-05  Score=78.80  Aligned_cols=74  Identities=22%  Similarity=0.234  Sum_probs=60.6

Q ss_pred             cEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCC------CccccCHHHHHHHHHHHHHHHHHHcCCCcccc
Q 020972           22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCS------NHNSVGEDAARETIEKVMADALLKSGSNRSAV   95 (319)
Q Consensus        22 ~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~------~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i   95 (319)
                      .|+||||+|+|++|++++|.         +|+++...+.+..      ...+.+++.+++.+.+.+++++++++..+++|
T Consensus         1 ~~~lgiDiGtt~iKa~l~d~---------~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~i~~~~~~~~~~~~~i   71 (493)
T TIGR01311         1 PYILAIDQGTTSSRAIVFDK---------DGNIVAIHQKEFTQIFPKPGWVEHDPMEIWESVLSCIAEALAKAGIKPDDI   71 (493)
T ss_pred             CeEEEEecCCCceEEEEECC---------CCCEEEEEeeeccccCCCCCcEeeCHHHHHHHHHHHHHHHHHHcCCChhhe
Confidence            37999999999999999999         9999988776321      11135788999999999999999988777789


Q ss_pred             ceEEEeecC
Q 020972           96 RAVCLAVSG  104 (319)
Q Consensus        96 ~~Igig~pG  104 (319)
                      .+||++.-+
T Consensus        72 ~aIgis~~~   80 (493)
T TIGR01311        72 AAIGITNQR   80 (493)
T ss_pred             eEEEEecCc
Confidence            888877654

This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.

>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]

Probab=98.04  E-value=2.2e-05  Score=78.26  Aligned_cols=76  Identities=22%  Similarity=0.207  Sum_probs=62.4

Q ss_pred             CCcEEEEEEcCccceeEEEEeCccCCCCCCCC-CCeEEEEecCCCC------ccccCHHHHHHHHHHHHHHHHHHcCCCc
Q 020972           20 GREVILGLDGGTTSTVCICMPVISMSDSLPDP-LPVLARAAAGCSN------HNSVGEDAARETIEKVMADALLKSGSNR   92 (319)
Q Consensus        20 m~~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~-G~il~~~~~~~~~------~~~~~~~~~~~~i~~~i~~~l~~~~~~~   92 (319)
                      |+.|+||||+|.|.+|++++|.         + ++++...+....-      ..+.+++++++.+.+++++++++..++.
T Consensus         2 ~~~~~lgIDiGTt~~Kavl~d~---------~~~~~~~~~~~~~~~~~~~~g~~e~d~~~~w~~~~~ai~~l~~~~~~~~   72 (502)
T COG1070           2 MMKYVLGIDIGTTSVKAVLFDE---------DGGEVVATARFENPVSTPQPGWAEQDPDELWQAILEALRQLLEESKIDP   72 (502)
T ss_pred             CccEEEEEEcCCCcEEEEEEeC---------CCCeEEEEeeccccccCCCCCCcccCHHHHHHHHHHHHHHHHHhcccCh
Confidence            5679999999999999999999         7 8888877654211      1236899999999999999999988777


Q ss_pred             cccceEEEeecC
Q 020972           93 SAVRAVCLAVSG  104 (319)
Q Consensus        93 ~~i~~Igig~pG  104 (319)
                      .+|.+|+++.-|
T Consensus        73 ~~I~aI~is~~~   84 (502)
T COG1070          73 DAIAAIGISGQG   84 (502)
T ss_pred             hhceEEEEeccc
Confidence            889888776555

>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase

Probab=98.00  E-value=2.5e-05  Score=78.55  Aligned_cols=72  Identities=19%  Similarity=0.201  Sum_probs=59.0

Q ss_pred             EEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecC--C----CCccccCHHHHHHHHHHHHHHHHHHcCCCccccc
Q 020972           23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAG--C----SNHNSVGEDAARETIEKVMADALLKSGSNRSAVR   96 (319)
Q Consensus        23 ~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~--~----~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~   96 (319)
                      ++||||+|+|++|++++|.         +|+++.+.+.+  .    ....+++++++++.+.+.+++++++.+....+|.
T Consensus         1 ~~lgID~GTts~Ka~l~d~---------~G~i~~~~~~~~~~~~~~~g~~eqdp~~~~~~~~~~i~~~~~~~~~~~~~I~   71 (541)
T TIGR01315         1 HYIGVDVGTGSARACIIDS---------TGDILALAAQNIKTWTPSSGLEGQSSVYIWQAICNCVKQVLAESKVDPNSVK   71 (541)
T ss_pred             CEEEEEecCcCEEEEEEcC---------CCCEEEEEEeeeeeccCCCCcccCCHHHHHHHHHHHHHHHHHHcCCChhheE
Confidence            4799999999999999999         99999876532  1    1223468899999999999999998887777899


Q ss_pred             eEEEeec
Q 020972           97 AVCLAVS  103 (319)
Q Consensus        97 ~Igig~p  103 (319)
                      +|||+.+
T Consensus        72 ~Igis~~   78 (541)
T TIGR01315        72 GIGFDAT   78 (541)
T ss_pred             EEEeccc
Confidence            9988764

This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.

>PTZ00294 glycerol kinase-like protein; Provisional

Probab=97.93  E-value=5.1e-05  Score=75.62  Aligned_cols=73  Identities=19%  Similarity=0.161  Sum_probs=58.7

Q ss_pred             EEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCC------CccccCHHHHHHHHHHHHHHHHHHcCCCcc--c
Q 020972           23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCS------NHNSVGEDAARETIEKVMADALLKSGSNRS--A   94 (319)
Q Consensus        23 ~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~------~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~--~   94 (319)
                      |+||||+|.|++|++++|.         +|+++...+.+..      ...+++++++++.+.+++++++++.+..+.  +
T Consensus         3 ~~lgiDiGTts~Ka~l~d~---------~G~~v~~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~~~   73 (504)
T PTZ00294          3 YIGSIDQGTTSTRFIIFDE---------KGNVVSSHQIPHEQITPHPGWLEHDPEEILRNVYKCMNEAIKKLREKGPSFK   73 (504)
T ss_pred             EEEEEecCCCceEEEEECC---------CCCEEEEEEEeecccCCCCCeEeeCHHHHHHHHHHHHHHHHHHcCCCCccCc
Confidence            8999999999999999999         9999987655321      122467889999999999999988776555  7


Q ss_pred             cceEEEeecC
Q 020972           95 VRAVCLAVSG  104 (319)
Q Consensus        95 i~~Igig~pG  104 (319)
                      |.+||+..-+
T Consensus        74 I~aIgis~q~   83 (504)
T PTZ00294         74 IKAIGITNQR   83 (504)
T ss_pred             eEEEEeecCc
Confidence            8888877654

>PRK15080 ethanolamine utilization protein EutJ; Provisional

Probab=97.91  E-value=0.015  Score=53.19  Aligned_cols=136  Identities=21%  Similarity=0.144  Sum_probs=88.7

Q ss_pred             CCcEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCcc---ccCHHHHHHHHHHHHHHHHHHcCCCccccc
Q 020972           20 GREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHN---SVGEDAARETIEKVMADALLKSGSNRSAVR   96 (319)
Q Consensus        20 m~~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~---~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~   96 (319)
                      ...++++||+|.||+++++.+.         +++++.....+.....   -.+.+.+...|.++++.+-+..+.   ++.
T Consensus        22 ~~~~~~~iDiGSssi~~vv~~~---------~~~~~~~~~~~~~~vr~G~i~di~~a~~~i~~~~~~ae~~~g~---~i~   89 (267)
T PRK15080         22 ESPLKVGVDLGTANIVLAVLDE---------DGQPVAGALEWADVVRDGIVVDFIGAVTIVRRLKATLEEKLGR---ELT   89 (267)
T ss_pred             CCCEEEEEEccCceEEEEEEcC---------CCCEEEEEeccccccCCCEEeeHHHHHHHHHHHHHHHHHHhCC---CcC
Confidence            3679999999999999999887         6666665554322110   124566666666665554444444   366


Q ss_pred             eEEEeecCCCCchhHHHHHHHHHhhCCCCceEEEeCcHHHHHHhhcCCCCCeEEEEECccceeEeEecCCcEEee
Q 020972           97 AVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTMGKLHGCVLIAGTGTIAYGFTEDGRDARA  171 (319)
Q Consensus        97 ~Igig~pG~~~~~~~~~l~~~L~~~~~~~~pv~v~NDa~aa~~g~~~g~~~~v~v~~GTGigg~gii~dG~~~ra  171 (319)
                      .+.+++|...+......+.+.+++. +. .+..+.++..+++.+-  +.++.+++-+|.|.--..++.+|++...
T Consensus        90 ~v~~~vp~~~~~~~~~~~~~~~~~a-Gl-~~~~ii~e~~A~a~~~--~~~~~~vvDIGggtt~i~v~~~g~~~~~  160 (267)
T PRK15080         90 HAATAIPPGTSEGDPRAIINVVESA-GL-EVTHVLDEPTAAAAVL--GIDNGAVVDIGGGTTGISILKDGKVVYS  160 (267)
T ss_pred             eEEEEeCCCCCchhHHHHHHHHHHc-CC-ceEEEechHHHHHHHh--CCCCcEEEEeCCCcEEEEEEECCeEEEE
Confidence            7778899876544445566655554 41 3555899988776642  2235688999988866667778887654

>TIGR01234 L-ribulokinase L-ribulokinase

Probab=97.87  E-value=5.7e-05  Score=75.88  Aligned_cols=72  Identities=17%  Similarity=0.180  Sum_probs=58.7

Q ss_pred             EEEEEEcCccceeEEEEe-CccCCCCCCCCCCeEEEEecCC-----------------CCccccCHHHHHHHHHHHHHHH
Q 020972           23 VILGLDGGTTSTVCICMP-VISMSDSLPDPLPVLARAAAGC-----------------SNHNSVGEDAARETIEKVMADA   84 (319)
Q Consensus        23 ~~lGIDiGGTk~~~~l~d-~~~~~~~~~~~G~il~~~~~~~-----------------~~~~~~~~~~~~~~i~~~i~~~   84 (319)
                      |+||||+|.|++|++++| .         +|+++...+.+.                 ....+++++++++.+.++++++
T Consensus         2 ~~lgiD~GTss~Ka~l~d~~---------~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~Eqdp~~~w~~~~~~~~~~   72 (536)
T TIGR01234         2 YAIGVDFGTLSGRALAVDVA---------TGEEIATAVEWYRHWVKGQFLPKTGAKLPNDQALQHPADYIEVLEAAIPTV   72 (536)
T ss_pred             eEEEEecCCCceEEEEEECC---------CCcEeeeeeeccccccccccCCCccccCCCCccccCHHHHHHHHHHHHHHH
Confidence            799999999999999999 8         899997765422                 1123567899999999999999


Q ss_pred             HHHcCCCccccceEEEeec
Q 020972           85 LLKSGSNRSAVRAVCLAVS  103 (319)
Q Consensus        85 l~~~~~~~~~i~~Igig~p  103 (319)
                      +++.+.++.+|.+|+++.-
T Consensus        73 ~~~~~~~~~~I~aI~~s~q   91 (536)
T TIGR01234        73 LAELGVDPADVVGIGVDFT   91 (536)
T ss_pred             HHHcCCCHHHEEEEEEecC
Confidence            9998777678988887654

This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.

>TIGR01314 gntK_FGGY gluconate kinase, FGGY type

Probab=97.86  E-value=6.9e-05  Score=74.71  Aligned_cols=72  Identities=15%  Similarity=0.216  Sum_probs=57.8

Q ss_pred             EEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCC------CccccCHHHHHHHHHHHHHHHHHHcCCCccccc
Q 020972           23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCS------NHNSVGEDAARETIEKVMADALLKSGSNRSAVR   96 (319)
Q Consensus        23 ~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~------~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~   96 (319)
                      |+||||+|+|++|++++|.         +|+++.+.+.+..      ...+.+++++++.+.+.+++++++.+.. .+|.
T Consensus         1 ~~lgiDiGtt~~K~~l~d~---------~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~-~~I~   70 (505)
T TIGR01314         1 YMIGVDIGTTSTKAVLFEE---------NGKIVAKSSIGYPLYTPASGMAEENPEEIFEAVLVTIREVSINLEDE-DEIL   70 (505)
T ss_pred             CEEEEeccccceEEEEEcC---------CCCEEEEEEeecccccCCCCCeeeCHHHHHHHHHHHHHHHHHhCCCc-CceE
Confidence            5899999999999999999         9999988776321      1223578899999999999999876654 5788


Q ss_pred             eEEEeecC
Q 020972           97 AVCLAVSG  104 (319)
Q Consensus        97 ~Igig~pG  104 (319)
                      +||++.-+
T Consensus        71 ~Igis~~~   78 (505)
T TIGR01314        71 FVSFSTQM   78 (505)
T ss_pred             EEEEeccc
Confidence            88887654

Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.

>COG1069 AraB Ribulose kinase [Energy production and conversion]

Probab=97.84  E-value=4.3e-05  Score=74.68  Aligned_cols=76  Identities=21%  Similarity=0.202  Sum_probs=63.9

Q ss_pred             CCcEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecC------CCCccccCHHHHHHHHHHHHHHHHHHcCCCcc
Q 020972           20 GREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAG------CSNHNSVGEDAARETIEKVMADALLKSGSNRS   93 (319)
Q Consensus        20 m~~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~------~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~   93 (319)
                      |+.|+||||+|..+-|++++|..        +|+.|.+...|      ..+..++++.+.++.++.+++++++++++++.
T Consensus         1 ~~~~~iGvDvGTgSaRA~v~D~~--------~G~~la~a~~p~~~~~~~~~~~~q~s~d~~~av~~aVr~~v~~agv~~~   72 (544)
T COG1069           1 MMAYVIGVDVGTGSARAGVFDCQ--------TGTLLARAVRPYPMWQPGSNLAEQHSRDYWEAVCAAVRDVVAKAGVDPA   72 (544)
T ss_pred             CccEEEEEeecCCceeEEEEEcC--------CCcchhhcccceeccccCccccccCHHHHHHHHHHHHHHHHHHcCCChh
Confidence            56799999999999999999982        49888776544      23444578899999999999999999999999


Q ss_pred             ccceEEEeec
Q 020972           94 AVRAVCLAVS  103 (319)
Q Consensus        94 ~i~~Igig~p  103 (319)
                      +|.+||+-..
T Consensus        73 ~V~gIGvDaT   82 (544)
T COG1069          73 DVVGIGVDAT   82 (544)
T ss_pred             HeeEEEEcce
Confidence            9999988654

>PLN02295 glycerol kinase

Probab=97.84  E-value=7.2e-05  Score=74.72  Aligned_cols=72  Identities=19%  Similarity=0.169  Sum_probs=57.3

Q ss_pred             EEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCC------CccccCHHHHHHHHHHHHHHHHHHcCCCccc--
Q 020972           23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCS------NHNSVGEDAARETIEKVMADALLKSGSNRSA--   94 (319)
Q Consensus        23 ~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~------~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~--   94 (319)
                      |+||||+|.|++|++++|.         +|+++.+.+.+..      ...+++++++++.+.+++++++++++..+.+  
T Consensus         1 ~vlgID~GTts~Ka~l~d~---------~G~~~~~~~~~~~~~~~~~G~~Eqdp~~~w~~~~~~i~~~~~~~~~~~~~i~   71 (512)
T PLN02295          1 FVGAIDQGTTSTRFIIYDR---------DARPVASHQVEFTQIYPQAGWVEHDPMEILESVLTCIAKALEKAAAKGHNVD   71 (512)
T ss_pred             CEEEEecCCCceEEEEECC---------CCCEEEEEeecccccCCCCCcEeeCHHHHHHHHHHHHHHHHHHcCCCccccc
Confidence            5899999999999999999         9999977654321      2234678999999999999999988776666  


Q ss_pred             --cceEEEeec
Q 020972           95 --VRAVCLAVS  103 (319)
Q Consensus        95 --i~~Igig~p  103 (319)
                        |.+||+..-
T Consensus        72 ~~i~aIg~s~q   82 (512)
T PLN02295         72 SGLKAIGITNQ   82 (512)
T ss_pred             cceEEEEEecC
Confidence              577766543

>COG5026 Hexokinase [Carbohydrate transport and metabolism]

Probab=97.81  E-value=0.00071  Score=64.65  Aligned_cols=136  Identities=13%  Similarity=0.027  Sum_probs=83.1

Q ss_pred             cCCCcEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEe---cCCCCccccCHHHHHHHHHHHHHHHHHHcCCCc-c
Q 020972           18 SGGREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAA---AGCSNHNSVGEDAARETIEKVMADALLKSGSNR-S   93 (319)
Q Consensus        18 ~~m~~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~---~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~-~   93 (319)
                      .+..+-+|.||.|||+.|++++.+.+       +|+.-.+..   .|..-..+..+++++..|++-+..++++..... .
T Consensus        71 g~e~g~~LaiD~GGTnlRvc~V~l~g-------~gt~~~~~sks~lp~e~~~~~~~~~l~~~iadrl~~fi~~~~~~~~~  143 (466)
T COG5026          71 GNESGSVLAIDLGGTNLRVCLVVLGG-------DGTFDIEQSKSFLPVECRDSESRDELFGFIADRLAAFIKEQHPSGYG  143 (466)
T ss_pred             CCCCCCEEEEecCCceEEEEEEEeCC-------CCCcccccCcccCchhhccCCChHHHHHHHHHHHHHHHHHhCchhcc
Confidence            44467899999999999999998732       344332211   111101112678888888888888887654211 1


Q ss_pred             cc--ceEEEeecCCCCc-hh----------------HH----HHHHHHHhhCCCCce---EEEeCcHHHHHHhh-cCCCC
Q 020972           94 AV--RAVCLAVSGVNHP-TD----------------QQ----RILNWLRDIFPGNVR---LYVHNDALAALASG-TMGKL  146 (319)
Q Consensus        94 ~i--~~Igig~pG~~~~-~~----------------~~----~l~~~L~~~~~~~~p---v~v~NDa~aa~~g~-~~g~~  146 (319)
                      +-  .+..++.|=...+ .+                +.    -|.+.|+++.   +|   +.|-||+...+++. +.+.+
T Consensus       144 ~~l~~gfTFSYP~~q~sin~g~l~rwTKgf~i~e~ig~dvv~~l~e~l~~r~---~pi~v~aviNDttgtlla~~yt~~~  220 (466)
T COG5026         144 SKLPIGFTFSYPLNQTSINEGQLIRWTKGFDIPEVIGTDVVRLLQEALSARN---LPIRVVAVINDTTGTLLASVYTSSE  220 (466)
T ss_pred             CcceeeEEEeccccccccCceeeEeecccCcchhhhhhhHHHHHHHHHHhcC---CceEEEEEecccHHHHHHHhhcCCC
Confidence            12  3444444432111 00                11    3455555543   44   67889999888865 34677


Q ss_pred             CeEEEEECccceeEeEe
Q 020972          147 HGCVLIAGTGTIAYGFT  163 (319)
Q Consensus       147 ~~v~v~~GTGigg~gii  163 (319)
                      +.+-++.|||..++-+.
T Consensus       221 ~~iG~IfGTGtN~~y~e  237 (466)
T COG5026         221 TIIGIIFGTGTNGCYCE  237 (466)
T ss_pred             CeEEEEEecCccceEEe
Confidence            89999999999886443

>COG3426 Butyrate kinase [Energy production and conversion]

Probab=97.80  E-value=0.0054  Score=55.68  Aligned_cols=248  Identities=18%  Similarity=0.143  Sum_probs=139.2

Q ss_pred             CCcEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHH------HHHH---HHHHHHHHHHHcCC
Q 020972           20 GREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDA------ARET---IEKVMADALLKSGS   90 (319)
Q Consensus        20 m~~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~------~~~~---i~~~i~~~l~~~~~   90 (319)
                      |+.-++-|.=|.|+|+.++++.         +-.+. .....      .+.++      +.++   =.+++.+++++.+.
T Consensus         1 ~~yriltINPGststKlaVfe~---------ek~if-e~tlr------hs~eEl~~f~~i~dQ~~fR~~~i~~~i~e~g~   64 (358)
T COG3426           1 MMYRILTINPGSTSTKLAVFED---------EKEIF-EKTLR------HSLEELEKFKRIPDQFEFRKDAILEFIDEQGY   64 (358)
T ss_pred             CceeEEEecCCCccceEEEecC---------chHhh-HHHhh------cCHHHHHHHhhhhHhHhHHHHHHHHHHHHhCC
Confidence            4556899999999999999985         33332 22111      12222      2222   13566777888887


Q ss_pred             CccccceEEEeecCCCCc----------hh----------------HHHHHHHHHhhCCCCceEEE------eCcHHHHH
Q 020972           91 NRSAVRAVCLAVSGVNHP----------TD----------------QQRILNWLRDIFPGNVRLYV------HNDALAAL  138 (319)
Q Consensus        91 ~~~~i~~Igig~pG~~~~----------~~----------------~~~l~~~L~~~~~~~~pv~v------~NDa~aa~  138 (319)
                      +.+++.++ +|=-|...|          +-                +.+|...+.+.++  +|.+|      |-=...|-
T Consensus        65 ~i~~~dAv-vgRGGLL~pi~gGTY~Vn~~M~~~lk~~~~G~haSnLGaiiA~~ia~~~g--vPayIVDPvvVDEm~~~Ar  141 (358)
T COG3426          65 NISKFDAV-VGRGGLLRPIPGGTYVVNEKMLKDLKNGVQGEHASNLGAIIANRIAKALG--VPAYIVDPVVVDEMEDVAR  141 (358)
T ss_pred             CcCCccce-eecCccccccCCceeEeCHHHHHHHHcCCCCcchhhhhHHHHHHHhhhcC--CCeeeeCceehhhcchhhh
Confidence            76677665 344443222          10                1245666666665  55444      33222221


Q ss_pred             Hh----------------------hc--CC----CCCeEEEEECccceeEeEecCCcEEeeCCCCCccCCcCChHHHHHH
Q 020972          139 AS----------------------GT--MG----KLHGCVLIAGTGTIAYGFTEDGRDARAAGAGPILGDWGSGYGIAAQ  190 (319)
Q Consensus       139 ~g----------------------~~--~g----~~~~v~v~~GTGigg~gii~dG~~~raGg~Ghl~gd~Gsa~~iG~~  190 (319)
                      +.                      .+  .|    .-+.++..+|.|+.. +--.+|+.+-.-.-   +-++| .+.    
T Consensus       142 ~SG~p~i~RkSiFHALN~KAVarr~A~e~gk~yee~n~vVaHmGggiSV-~ah~~GrvIDvnna---ldgeG-Pfs----  212 (358)
T COG3426         142 FSGIPEIERKSIFHALNQKAVARRAAKEVGKRYEEMNIVVAHMGGGISV-GAHKQGRVIDVNNA---LDGEG-PFS----  212 (358)
T ss_pred             hcCCccchhHHHHHHhhHHHHHHHHHHHhccchhhheEEEEeccCceEE-EEecCCcEEeccCC---CCCCC-CCC----
Confidence            11                      00  12    236788889999855 45578988741100   00011 000    


Q ss_pred             HHHHHHHHhcCCCCCchhHHHHHHHcCCCChhhHHHHhccCCCh-HHH-hchhHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 020972          191 ALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSW-ARI-AALVPVVVSCAEAGDEVANKILQDSVEELAL  268 (319)
Q Consensus       191 ~~~~~~~~~dg~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~-a~~~~~v~~~A~~GD~~A~~il~~a~~~Lg~  268 (319)
                            ....|..+...+.+.|..  +..+.+++.+.+..+... ... ...+..|.+.+++||+.|+.+++-++..+++
T Consensus       213 ------persG~lP~~dlv~lcfS--gk~t~~El~k~i~g~gG~~aylGT~d~~~v~~~~~~Gd~~a~~~~~AmayQVaK  284 (358)
T COG3426         213 ------PERSGTLPTGDLVRLCFS--GKYTEEELLKKITGKGGLVAYLGTNDAKEVERRIEQGDEKAKLAYEAMAYQVAK  284 (358)
T ss_pred             ------cccCCCCChHHHHHHHhc--CcccHHHHHHHhhcCCceEEEeccchHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence                  001223333333332211  112344555544322100 000 0125678888999999999999999999999


Q ss_pred             HHHHHHHHhcccCCCcchhhcccccccEEEEcchhhhcHHHHHHHHhhc
Q 020972          269 SVKAVVQRLSLSGEGVTYTKILKEKVPLLMENILFLLSWLVVFLKLIEG  317 (319)
Q Consensus       269 ~la~li~~l~~~~~~~~~~~~~~~~~~ivl~Gg~~~~~~~~~~~~~~~~  317 (319)
                      .|..+...|.=            .+..|||-||+.  -|+.|.+.+.++
T Consensus       285 eIG~~savL~G------------~vDaIvLTGGiA--~~~~f~~~I~~~  319 (358)
T COG3426         285 EIGAMSAVLKG------------KVDAIVLTGGIA--YEKLFVDAIEDR  319 (358)
T ss_pred             HHHhhhhhcCC------------CCCEEEEecchh--hHHHHHHHHHHH
Confidence            99999887763            467899999997  788888877654

>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein

Probab=97.78  E-value=0.014  Score=52.45  Aligned_cols=128  Identities=20%  Similarity=0.134  Sum_probs=83.9

Q ss_pred             EEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccc----cCHHHHHHHHHHHHHHHHHHcCCCccccceEEEe
Q 020972           26 GLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNS----VGEDAARETIEKVMADALLKSGSNRSAVRAVCLA  101 (319)
Q Consensus        26 GIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~----~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Igig  101 (319)
                      |+|+|.|++|+++.+.         +++.++....+.. +..    .+.+.+...+..+.+.+-...+.   ++..+.++
T Consensus         1 g~dig~~~ik~v~~~~---------~~~~~~~~~~~~~-~~~~g~I~d~~~~~~~l~~l~~~a~~~~g~---~~~~vvis   67 (239)
T TIGR02529         1 GVDLGTANIVIVVLDE---------DGQPVAGVMQFAD-VVRDGIVVDFLGAVEIVRRLKDTLEQKLGI---ELTHAATA   67 (239)
T ss_pred             CCCcccceEEEEEEec---------CCCEEEEEecccc-cccCCeEEEhHHHHHHHHHHHHHHHHHhCC---CcCcEEEE
Confidence            6899999999999887         6656666654432 211    24565555555555444333332   46677899


Q ss_pred             ecCCCCchhHHHHHHHHHhhCCCCceEEEeCcHHHHHHhhcCCCCCeEEEEECccceeEeEecCCcEEe
Q 020972          102 VSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTMGKLHGCVLIAGTGTIAYGFTEDGRDAR  170 (319)
Q Consensus       102 ~pG~~~~~~~~~l~~~L~~~~~~~~pv~v~NDa~aa~~g~~~g~~~~v~v~~GTGigg~gii~dG~~~r  170 (319)
                      +|...+......+.+.++.. +. .++.+.|+..+++++-  +..+.+++-+|.|.--..++.+|++..
T Consensus        68 VP~~~~~~~r~a~~~a~~~a-Gl-~~~~li~ep~Aaa~~~--~~~~~~vvDiGggtt~i~i~~~G~i~~  132 (239)
T TIGR02529        68 IPPGTIEGDPKVIVNVIESA-GI-EVLHVLDEPTAAAAVL--QIKNGAVVDVGGGTTGISILKKGKVIY  132 (239)
T ss_pred             ECCCCCcccHHHHHHHHHHc-CC-ceEEEeehHHHHHHHh--cCCCcEEEEeCCCcEEEEEEECCeEEE
Confidence            99976655555566666554 32 5799999999887752  233468889998875555667777654

>PRK10331 L-fuculokinase; Provisional

Probab=97.74  E-value=0.00015  Score=71.57  Aligned_cols=72  Identities=21%  Similarity=0.249  Sum_probs=56.4

Q ss_pred             cEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCC--------CccccCHHHHHHHHHHHHHHHHHHcCCCcc
Q 020972           22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCS--------NHNSVGEDAARETIEKVMADALLKSGSNRS   93 (319)
Q Consensus        22 ~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~--------~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~   93 (319)
                      +|+||||+|.|++|++++|.         +|+++.+.+.+..        ...+++++++++.+.+.+++++++.  ...
T Consensus         2 ~~~lgID~GTt~~Ka~l~d~---------~G~~~~~~~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~~~~~~--~~~   70 (470)
T PRK10331          2 DVILVLDCGATNVRAIAVDR---------QGKIVARASTPNASDIAAENSDWHQWSLDAILQRFADCCRQINSEL--TEC   70 (470)
T ss_pred             ceEEEEecCCCceEEEEEcC---------CCcEEEEEecccccccCCCCCCCcccCHHHHHHHHHHHHHHHHHhC--Ccc
Confidence            48999999999999999999         9999988766421        1224688899999999999998765  234


Q ss_pred             ccceEEEeecC
Q 020972           94 AVRAVCLAVSG  104 (319)
Q Consensus        94 ~i~~Igig~pG  104 (319)
                      +|.+|++..-+
T Consensus        71 ~I~~I~is~~~   81 (470)
T PRK10331         71 HIRGITVTTFG   81 (470)
T ss_pred             ceEEEEEeccc
Confidence            68888776543

>PRK13317 pantothenate kinase; Provisional

Probab=97.68  E-value=0.0069  Score=55.71  Aligned_cols=114  Identities=15%  Similarity=0.148  Sum_probs=62.2

Q ss_pred             cEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceEEEe
Q 020972           22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLA  101 (319)
Q Consensus        22 ~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Igig  101 (319)
                      .+.+|||+|+|.+|++++|.         ++++..+...    .  ...+        .+.+++..    ..++..+  .
T Consensus         2 ~~~iGIDiGstt~K~v~~~~---------~~~~~~~~~~----~--~~~~--------~~~~~l~~----~~~~~~i--~   52 (277)
T PRK13317          2 EMKIGIDAGGTLTKIVYLEE---------KKQRTFKTEY----S--AEGK--------KVIDWLIN----LQDIEKI--C   52 (277)
T ss_pred             CceEEEEeCcccEEEEEEcC---------CCeEEEEeec----c--HHHH--------HHHHHhhc----cCCceEE--E
Confidence            48999999999999999998         7776654311    1  1111        22222321    1234443  3


Q ss_pred             ecCCCCchhHHHHHHHHHhhCCCCceEEEeCcHHHHHHhh--cC-----CCCCeEEEEECccceeEeEecCCcEEeeCC
Q 020972          102 VSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASG--TM-----GKLHGCVLIAGTGTIAYGFTEDGRDARAAG  173 (319)
Q Consensus       102 ~pG~~~~~~~~~l~~~L~~~~~~~~pv~v~NDa~aa~~g~--~~-----g~~~~v~v~~GTGigg~gii~dG~~~raGg  173 (319)
                      +.|....    .+.+.+  .++  .|+.=.....|...|.  ..     ...+++++..|||+. .-.+.+++..|.+|
T Consensus        53 ~TG~g~~----~~~~~~--~~~--~~~~~v~E~~a~~~g~~~l~~~~~~~~~~~~i~~iG~g~s-i~~~~g~~~~r~~G  122 (277)
T PRK13317         53 LTGGKAG----YLQQLL--NYG--YPIAEFVEFEATGLGVRYLLKEEGHDLNDYIFTNIGTGTS-IHYVDGNSQRRVGG  122 (277)
T ss_pred             EECcchh----hhhHHH--hcC--CCeeeeHHHHHHHHHHHHHHHhcCCCCCcEEEEEecCceE-EEEEeCCceEEEcc
Confidence            3453321    222222  233  5652233344333332  12     557899999999984 44666666777554

>PRK15027 xylulokinase; Provisional

Probab=97.68  E-value=0.00017  Score=71.51  Aligned_cols=69  Identities=16%  Similarity=0.151  Sum_probs=54.7

Q ss_pred             EEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCC------CccccCHHHHHHHHHHHHHHHHHHcCCCccccc
Q 020972           23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCS------NHNSVGEDAARETIEKVMADALLKSGSNRSAVR   96 (319)
Q Consensus        23 ~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~------~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~   96 (319)
                      ++||||+|.|++|++++|.         +|+++...+.+..      ...+++++++++.+.+++++++++.  +.++|.
T Consensus         1 ~~lgID~GTts~Ka~l~d~---------~G~vva~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~l~~~~--~~~~I~   69 (484)
T PRK15027          1 MYIGIDLGTSGVKVILLNE---------QGEVVASQTEKLTVSRPHPLWSEQDPEQWWQATDRAMKALGDQH--SLQDVK   69 (484)
T ss_pred             CEEEEEecccceEEEEEcC---------CCCEEEEEeecccccCCCCCccccCHHHHHHHHHHHHHHHHHhC--Ccccee
Confidence            5899999999999999999         9999987654321      2234678899999999999999875  345788


Q ss_pred             eEEEee
Q 020972           97 AVCLAV  102 (319)
Q Consensus        97 ~Igig~  102 (319)
                      +||++.
T Consensus        70 aI~is~   75 (484)
T PRK15027         70 ALGIAG   75 (484)
T ss_pred             EEEEec
Confidence            888854

>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit

Probab=97.67  E-value=0.019  Score=53.05  Aligned_cols=65  Identities=12%  Similarity=0.184  Sum_probs=44.7

Q ss_pred             EEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceEEEee
Q 020972           23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV  102 (319)
Q Consensus        23 ~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Igig~  102 (319)
                      +++|||+|.|.+|++|+|.          ++++.....++ ..   ++.   +...+++++++++.+...+++..++  .
T Consensus        33 ~~~GIDiGStt~K~Vlld~----------~~i~~~~~~~t-g~---~~~---~~a~~~l~~~l~~~g~~~~~v~~~~--~   93 (293)
T TIGR03192        33 ITCGIDVGSVSSQAVLVCD----------GELYGYNSMRT-GN---NSP---DSAKNALQGIMDKIGMKLEDINYVV--G   93 (293)
T ss_pred             EEEEEEeCchhEEEEEEeC----------CEEEEEEeecC-CC---CHH---HHHHHHHHHHHHHcCCcccceEEEE--E
Confidence            7999999999999999985          46766655432 21   233   2355666777788877656677654  4


Q ss_pred             cCCC
Q 020972          103 SGVN  106 (319)
Q Consensus       103 pG~~  106 (319)
                      .|..
T Consensus        94 TGyG   97 (293)
T TIGR03192        94 TGYG   97 (293)
T ss_pred             ECcc
Confidence            6665

Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.

>TIGR02628 fuculo_kin_coli L-fuculokinase

Probab=97.59  E-value=0.00033  Score=69.18  Aligned_cols=71  Identities=18%  Similarity=0.207  Sum_probs=55.5

Q ss_pred             EEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCC--------CccccCHHHHHHHHHHHHHHHHHHcCCCccc
Q 020972           23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCS--------NHNSVGEDAARETIEKVMADALLKSGSNRSA   94 (319)
Q Consensus        23 ~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~--------~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~   94 (319)
                      ++||||+|.|++|++++|.         +|+++...+.+..        ...+++++++++.+.+++++++.+  ..+.+
T Consensus         2 ~ilgiD~GTss~K~~l~d~---------~g~~va~~~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~l~~~--~~~~~   70 (465)
T TIGR02628         2 VILVLDCGATNLRAIAINR---------QGKIVASASTPNATKQAIENNDYHIWDLEAIWQKLADCCQQINSE--LTEKH   70 (465)
T ss_pred             eEEEEecCCCcEEEEEEcC---------CCCEEEEEecccccCCCCCCCCceeeCHHHHHHHHHHHHHHHHhh--cChhc
Confidence            7999999999999999999         9999987665311        122468889999999999999864  34456


Q ss_pred             cceEEEeecC
Q 020972           95 VRAVCLAVSG  104 (319)
Q Consensus        95 i~~Igig~pG  104 (319)
                      |.+|++..-|
T Consensus        71 I~aI~~s~~~   80 (465)
T TIGR02628        71 IRGIAVTTFG   80 (465)
T ss_pred             eEEEEEeccc
Confidence            8888876543

Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.

>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P)

Probab=97.54  E-value=0.001  Score=58.48  Aligned_cols=117  Identities=14%  Similarity=0.058  Sum_probs=73.1

Q ss_pred             cccCCCcEEEEEEcCccceeEEEEeCccCCCCCCCCCC-eE--EEEecC-CCCccccCHHHHHHHHHHHHHHHHHHcCC-
Q 020972           16 EESGGREVILGLDGGTTSTVCICMPVISMSDSLPDPLP-VL--ARAAAG-CSNHNSVGEDAARETIEKVMADALLKSGS-   90 (319)
Q Consensus        16 ~~~~m~~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~-il--~~~~~~-~~~~~~~~~~~~~~~i~~~i~~~l~~~~~-   90 (319)
                      ++....+.+|+||+|||+.|++++.+         .|. ..  .+.... |........+++.+-|++.+.+++++... 
T Consensus        57 P~G~E~G~~LalDlGGTnlRv~~V~L---------~g~~~~~~~~~~~~ip~~~~~~~~~~lFd~ia~~i~~f~~~~~~~  127 (206)
T PF00349_consen   57 PTGNEKGDFLALDLGGTNLRVALVEL---------SGNGKVEIEQEKYKIPEELMNGSGEELFDFIADCIAEFLKEHNLE  127 (206)
T ss_dssp             TTSTTEEEEEEEEESSSSEEEEEEEE---------ESSSEEEEEEEEEE--HHHHTSBHHHHHHHHHHHHHHHHHHTTTT
T ss_pred             CCCCCCceEEEEeecCcEEEEEEEEE---------cCCCCceeeeccccCChHHhcCCcccHHHHHHHHHHHHHHHhccc
Confidence            44555678999999999999999998         444 22  112111 11111134588899999999999998765 


Q ss_pred             CccccceEEEeecCCCCchh-----------------------HHHHHHHHHhhCCC-CceEEEeCcHHHHHHhh
Q 020972           91 NRSAVRAVCLAVSGVNHPTD-----------------------QQRILNWLRDIFPG-NVRLYVHNDALAALASG  141 (319)
Q Consensus        91 ~~~~i~~Igig~pG~~~~~~-----------------------~~~l~~~L~~~~~~-~~pv~v~NDa~aa~~g~  141 (319)
                      +..+..-+|+.++=|.+...                       ...|.+.|+++--. ...+.|-||+.+.+++.
T Consensus       128 ~~~~~l~lGfTFSFP~~q~~~~~g~li~wtKgf~~~~~~G~dv~~lL~~al~r~~~~~v~v~aivNDTVgTLla~  202 (206)
T PF00349_consen  128 SRDEKLPLGFTFSFPVEQTSLNSGTLIRWTKGFDISGVVGKDVVELLQDALKRRGLPNVKVVAIVNDTVGTLLAG  202 (206)
T ss_dssp             STTSEEEEEEEEESSEEESSTTEEEE----TT---BTGTTSBHHHHHHHHHHHHTSSEEEEEEEE-HHHHHHHHH
T ss_pred             ccccccceEEEEEEEEEeccCCCeEEEEeeccccccCCCCCccchhHHHHHHHhcccCcceEEEEECCHHHhhhh
Confidence            23345556666666643210                       12456666555311 13588999999887764

The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....

>COG0554 GlpK Glycerol kinase [Energy production and conversion]

Probab=97.52  E-value=0.00029  Score=68.16  Aligned_cols=72  Identities=22%  Similarity=0.260  Sum_probs=61.9

Q ss_pred             CcEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecC------CCCccccCHHHHHHHHHHHHHHHHHHcCCCccc
Q 020972           21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAG------CSNHNSVGEDAARETIEKVMADALLKSGSNRSA   94 (319)
Q Consensus        21 ~~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~------~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~   94 (319)
                      +.|++.||-|.|++|+.++|.         +|+++.+.+.+      .....+.+|.++++.....+++++.++++.+.+
T Consensus         4 ~~yIlAiDqGTTssRaivfd~---------~g~iva~~q~e~~Q~yP~~GWVEhDp~eIw~~~~~~l~~a~~~~~i~~~~   74 (499)
T COG0554           4 DKYILAIDQGTTSSRAIVFDE---------DGNIVAIAQREFTQIYPQPGWVEHDPLEIWASVRSVLKEALAKAGIKPGE   74 (499)
T ss_pred             ccEEEEEecCCcceeEEEECC---------CCCchhhhhhhhhhhCCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccc
Confidence            469999999999999999999         99999876543      223446789999999999999999999999889


Q ss_pred             cceEEEe
Q 020972           95 VRAVCLA  101 (319)
Q Consensus        95 i~~Igig  101 (319)
                      |.+|||.
T Consensus        75 iaaIGIT   81 (499)
T COG0554          75 IAAIGIT   81 (499)
T ss_pred             eEEEEee
Confidence            9998875

>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15

Probab=97.41  E-value=0.071  Score=51.28  Aligned_cols=65  Identities=25%  Similarity=0.338  Sum_probs=47.3

Q ss_pred             cEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceEEEe
Q 020972           22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLA  101 (319)
Q Consensus        22 ~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Igig  101 (319)
                      ++++|||+|+|.||++++|.          ++++.....++.     .+   .+.+.+++++++++.++..+++..++  
T Consensus       144 g~~lGIDiGSTttK~Vl~dd----------~~Ii~~~~~~t~-----~~---~~~a~~~l~~~l~~~Gl~~~di~~i~--  203 (404)
T TIGR03286       144 GLTLGIDSGSTTTKAVVMED----------NEVIGTGWVPTT-----KV---IESAEEAVERALEEAGVSLEDVEAIG--  203 (404)
T ss_pred             CEEEEEEcChhheeeEEEcC----------CeEEEEEEeecc-----cH---HHHHHHHHHHHHHHcCCCccceeEEE--
Confidence            48999999999999999974          588777655331     11   34567778888888887766776654  


Q ss_pred             ecCCC
Q 020972          102 VSGVN  106 (319)
Q Consensus       102 ~pG~~  106 (319)
                      +.|..
T Consensus       204 ~TGyG  208 (404)
T TIGR03286       204 TTGYG  208 (404)
T ss_pred             eeeec
Confidence            46654

Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.

>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]

Probab=97.39  E-value=0.097  Score=49.58  Aligned_cols=66  Identities=24%  Similarity=0.297  Sum_probs=44.7

Q ss_pred             cEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceEEEe
Q 020972           22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLA  101 (319)
Q Consensus        22 ~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Igig  101 (319)
                      .++||||.|.|.||++|++.         +..++..... +++.   .+.     ..+++++++++.+....+|.+  ++
T Consensus       135 ~~~LGID~GSTtTK~VLm~d---------~~~I~~~~~~-~t~g---~p~-----~~~~l~~~le~l~~~~~~I~~--~~  194 (396)
T COG1924         135 MYTLGIDSGSTTTKAVLMED---------GKEILYGFYV-STKG---RPI-----AEKALKEALEELGEKLEEILG--LG  194 (396)
T ss_pred             cEEEEEecCCcceeEEEEeC---------CCeEEEEEEE-cCCC---Chh-----HHHHHHHHHHHcccChheeee--ee
Confidence            48999999999999999997         5556555553 3222   222     255666777777766556765  56


Q ss_pred             ecCCCC
Q 020972          102 VSGVNH  107 (319)
Q Consensus       102 ~pG~~~  107 (319)
                      +.|...
T Consensus       195 ~TGYGR  200 (396)
T COG1924         195 VTGYGR  200 (396)
T ss_pred             eecccH
Confidence            677653

>PF00871 Acetate_kinase: Acetokinase family; InterPro: IPR000890 Acetate kinase, which is predominantly found in micro-organisms, facilitates the production of acetyl-CoA by phosphorylating acetate in the presence of ATP and a divalent cation [, ]

Probab=97.38  E-value=0.084  Score=50.94  Aligned_cols=142  Identities=18%  Similarity=0.122  Sum_probs=78.0

Q ss_pred             CCeEEEEECccceeEeEecCCcEEeeCCCCCccCCcCChHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHcCCCChhhHH
Q 020972          146 LHGCVLIAGTGTIAYGFTEDGRDARAAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELI  225 (319)
Q Consensus       146 ~~~v~v~~GTGigg~gii~dG~~~raGg~Ghl~gd~Gsa~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~~~~~l~  225 (319)
                      .+.|+.-+|.|+..+ -+.+|+.+-. -.|.. ..+|--  .         ....|..++..+.. +.+..+. +.+++.
T Consensus       199 ~~lIvaHLG~G~Sv~-A~~~GrsvDt-smG~t-pleGl~--m---------~tRsG~ldp~~~~~-l~~~~~~-s~~e~~  262 (388)
T PF00871_consen  199 LNLIVAHLGSGASVC-AIKNGRSVDT-SMGFT-PLEGLM--M---------GTRSGDLDPGVLLY-LCRSGGM-SADELE  262 (388)
T ss_dssp             -EEEEEEESSSEEEE-EEETTEEEEE-SBTSS-TTSSS-------------SSB--S--THHHHH-HHHHCT---HHHHH
T ss_pred             cCEEEEEeCCCcEEE-EEECCEEEEe-cCCCC-CCCCCC--C---------CCCCCCCChHHHHH-HHHhcCC-CHHHHH
Confidence            478999999998665 5589997641 11110 001100  0         00111111222222 2222221 344454


Q ss_pred             HHhccCCCh---HHHhchhHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhcccccccEEEEcch
Q 020972          226 GWTYVDPSW---ARIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEGVTYTKILKEKVPLLMENIL  302 (319)
Q Consensus       226 ~~~~~~~~~---~~~a~~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~la~li~~l~~~~~~~~~~~~~~~~~~ivl~Gg~  302 (319)
                      ..++.+...   ..+....+.|.+.+.+||+.|+.+++-++..+++.|..+...|+  |.          -..||+.||+
T Consensus       263 ~~l~~~sGL~g~sG~s~D~r~i~~~~~~gd~~A~la~d~~~y~i~k~Ig~~~a~l~--G~----------vDaivfTGGi  330 (388)
T PF00871_consen  263 RLLNKESGLLGLSGISNDMREIEARIEEGDERAKLALDAFAYQIAKYIGAYAAVLE--GG----------VDAIVFTGGI  330 (388)
T ss_dssp             HHHHHSSHHHHHHSSSS-HHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHHHHT--SS-----------SEEEEEHHH
T ss_pred             HHHHhccCcEeccCCCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhc--cC----------CCEEEEcccc
Confidence            444432211   11112367888899999999999999999999999999999885  11          2479999999


Q ss_pred             hhhcHHHHHHHHhh
Q 020972          303 FLLSWLVVFLKLIE  316 (319)
Q Consensus       303 ~~~~~~~~~~~~~~  316 (319)
                      . .+-.++...+++
T Consensus       331 g-e~~~~vr~~~~~  343 (388)
T PF00871_consen  331 G-ENSALVRERICR  343 (388)
T ss_dssp             H-HHTHHHHHHHHC
T ss_pred             c-cchHHHHHHHHh
Confidence            8 443444444443

The enzyme is important in the process of glycolysis, enzyme levels being increased in the presence of excess glucose. The growth of a bacterial mutant lacking acetate kinase has been shown to be inhibited by glucose, suggesting that the enzyme is involved in excretion of excess carbohydrate []. A related enzyme, butyrate kinase, facilitates the formation of butyryl-CoA by phosphorylating butyrate in the presence of ATP to form butyryl phosphate [].; GO: 0016301 kinase activity, 0016774 phosphotransferase activity, carboxyl group as acceptor, 0008152 metabolic process, 0016310 phosphorylation, 0005622 intracellular; PDB: 3P4I_B 3R9P_B 2IIR_J 1SAZ_A 1X9J_D 4DQ8_B 1TUU_A 1TUY_B 1G99_A 1X3N_A ....

>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family

Probab=97.37  E-value=0.00049  Score=59.04  Aligned_cols=63  Identities=25%  Similarity=0.265  Sum_probs=47.7

Q ss_pred             EEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceEEEee
Q 020972           25 LGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV  102 (319)
Q Consensus        25 lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Igig~  102 (319)
                      ||||+|||+|.++++|.         +..++...+.+++.      +....-|.+++++++.+.+.++++|..|-+|.
T Consensus         2 igIDvGGT~TD~v~~d~---------~~~~~~~~K~~Tt~------~d~~~gi~~al~~l~~~~~~~~~~i~~v~~gT   64 (176)
T PF05378_consen    2 IGIDVGGTFTDAVLLDE---------DTGVVATAKVPTTP------DDPAEGILEALDALLEESGIDPSDIDRVRHGT   64 (176)
T ss_pred             eeEecCCCcEEEEEEeC---------CCCEEEEEEeCCCC------cCHHHHHHHHHHhhhcccCCChhhCcEEEecc
Confidence            79999999999999998         66788888876542      23344567777777777776677888777766

>PLN02669 xylulokinase

Probab=97.29  E-value=0.00099  Score=67.28  Aligned_cols=73  Identities=15%  Similarity=0.109  Sum_probs=55.5

Q ss_pred             CCCcEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCC------C---ccccCHH----------HHHHHHHH
Q 020972           19 GGREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCS------N---HNSVGED----------AARETIEK   79 (319)
Q Consensus        19 ~m~~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~------~---~~~~~~~----------~~~~~i~~   79 (319)
                      |...|+||||+|.|++|++++|.         +|+++...+.+..      .   ..+.+++          .+++.+..
T Consensus         5 ~~~~~~LGiD~GT~s~Ka~l~d~---------~g~vv~~a~~~~~~~~~~~~~~~gve~dp~~~~~~~~~~~~w~~al~~   75 (556)
T PLN02669          5 PEDSLFLGFDSSTQSLKATVLDS---------NLRIVASEIVHFDSDLPHYGTKDGVYRDPKVNGRIVSPTLMWVEALDL   75 (556)
T ss_pred             CCCCeEEEEecccCCeEEEEEcC---------CCCEEEEEEecCCcccCcCCCCCceEeCCcccCccCCCHHHHHHHHHH
Confidence            45569999999999999999999         9999988766421      0   1123444          56799999


Q ss_pred             HHHHHHHHcCCCccccceEEEe
Q 020972           80 VMADALLKSGSNRSAVRAVCLA  101 (319)
Q Consensus        80 ~i~~~l~~~~~~~~~i~~Igig  101 (319)
                      +++++. +.+.+.++|.+|+++
T Consensus        76 ~l~~l~-~~~~~~~~I~aIs~s   96 (556)
T PLN02669         76 LLQKLA-KEKFPFHKVVAISGS   96 (556)
T ss_pred             HHHHHH-HcCCChhhEEEEEec
Confidence            999877 556666789888876

>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family

Probab=97.28  E-value=0.16  Score=47.44  Aligned_cols=130  Identities=15%  Similarity=0.096  Sum_probs=81.0

Q ss_pred             EEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCC---------CccccCHHHHHHHHHHHHHHHHHHcCCCcccc
Q 020972           25 LGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCS---------NHNSVGEDAARETIEKVMADALLKSGSNRSAV   95 (319)
Q Consensus        25 lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~---------~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i   95 (319)
                      |+||--...+.++++|.         +++++...+....         .+ +.....-.+.|...+++++++++.++.+|
T Consensus         1 LaidTs~~~~sval~~~---------~~~il~~~~~~~~~~~~~~gGi~p-~~~~~~H~~~l~~~i~~~l~~~~~~~~di   70 (305)
T TIGR00329         1 LGIETSCDDTGVAIVDE---------EGNVLANIKISQIPLHAKYGGVVP-EEASRHHAENIPPLLERALIESNVDKSEI   70 (305)
T ss_pred             CEEecCccceEEEEEEC---------CCcEEEEEEecccccccccCCcCc-chhHHHHHHHHHHHHHHHHHHcCCCHHHC
Confidence            57888888889999986         5788876543210         11 12234446778889999999999999999


Q ss_pred             ceEEEee-cCCCCc-hhHHHHHHHHHhhCCCCceEEEeCcHHHHHHhhc--CC--CCCeEEEEECccceeEeEecCC
Q 020972           96 RAVCLAV-SGVNHP-TDQQRILNWLRDIFPGNVRLYVHNDALAALASGT--MG--KLHGCVLIAGTGTIAYGFTEDG  166 (319)
Q Consensus        96 ~~Igig~-pG~~~~-~~~~~l~~~L~~~~~~~~pv~v~NDa~aa~~g~~--~g--~~~~v~v~~GTGigg~gii~dG  166 (319)
                      ..|+++. ||.... .-+....+-|...++  +|+.--|.-.+-++...  .+  ..+++++.+.-|..-..+..++
T Consensus        71 d~iav~~GPG~~tglrvg~~~Ak~la~~~~--~p~~~v~hl~~ha~~a~~~s~~~~~~~l~l~vsGG~t~l~~~~~~  145 (305)
T TIGR00329        71 DLIAYTQGPGLGGSLRVGATFARSLALSLD--KPLIGVNHLLGHIYAPRLDTNILQFPFVSLLVSGGHTQIIAVKGI  145 (305)
T ss_pred             CEEEEecCCCchhhHHHHHHHHHHHHHHhC--CCEeecccHHHHHHHhhhhcCCCCCCcEEEEEcCCceEEEEEeCC
Confidence            9998875 664322 123455667777776  89887777765443322  13  3445544443265333333333

This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.

>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D

Probab=97.23  E-value=0.1  Score=47.48  Aligned_cols=68  Identities=19%  Similarity=0.196  Sum_probs=44.2

Q ss_pred             EEEEEEcCccceeEEEEeCccCCCCCCCCCC---eEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceEE
Q 020972           23 VILGLDGGTTSTVCICMPVISMSDSLPDPLP---VLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVC   99 (319)
Q Consensus        23 ~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~---il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Ig   99 (319)
                      +++|||+|.|.+|++++|.         +++   ++.....+ ++.  .++.   +...+++++++++.+....++.+++
T Consensus         2 ~~~GIDiGStttK~Vlid~---------~~~~~~~~~~~~~~-~~~--~~~~---~~~~~~l~~~~~~~g~~~~~i~~i~   66 (262)
T TIGR02261         2 ITAGIDIGTGAIKTVLFEV---------DGDKEECLAKRNDR-IRQ--RDPF---KLAEDAYDDLLEEAGLAAADVAYCA   66 (262)
T ss_pred             eEEEEEcCcccEEEEEEec---------CCCeeEEEEEEEec-CCC--CCHH---HHHHHHHHHHHHHcCCChhheEEEE
Confidence            6899999999999999996         454   23333222 222  2332   3356677778888887666777654


Q ss_pred             EeecCCCC
Q 020972          100 LAVSGVNH  107 (319)
Q Consensus       100 ig~pG~~~  107 (319)
                        ..|+..
T Consensus        67 --~TGYGR   72 (262)
T TIGR02261        67 --TTGEGE   72 (262)
T ss_pred             --EECCch
Confidence              477643

This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.

>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type

Probab=96.98  E-value=0.15  Score=46.91  Aligned_cols=117  Identities=16%  Similarity=0.127  Sum_probs=65.3

Q ss_pred             EEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceEEEeec
Q 020972           24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVS  103 (319)
Q Consensus        24 ~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Igig~p  103 (319)
                      .+|||+|||-+|++..|.         ++++..... ++     ...+++++-+.+.    ....    +.+..  +.+.
T Consensus         2 ~iGiDiGgT~~Kiv~~~~---------~~~~~f~~~-~~-----~~~~~~~~~l~~~----~~~~----~~~~~--i~~T   56 (279)
T TIGR00555         2 RIGIDIGGTLIKVVYEEP---------KGRRKFKTF-ET-----TNIDKFIEWLKNQ----IHRH----SRITT--LCAT   56 (279)
T ss_pred             eEEEEeCcceEEEEEEcC---------CCcEEEEEe-ec-----ccHHHHHHHHHHH----HHhh----cCceE--EEEE
Confidence            589999999999999988         788776543 33     2344544444433    2221    12333  3444


Q ss_pred             CCCCchhHHHHHHHHHhhCCCCceEEEeCcHHHHHHhh--c------CCCCCeEEEEECccceeEeEecCC-cEEeeCC
Q 020972          104 GVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASG--T------MGKLHGCVLIAGTGTIAYGFTEDG-RDARAAG  173 (319)
Q Consensus       104 G~~~~~~~~~l~~~L~~~~~~~~pv~v~NDa~aa~~g~--~------~g~~~~v~v~~GTGigg~gii~dG-~~~raGg  173 (319)
                      |-.    ...+.+.+...++  +++.-.....+...|.  .      ....+.+++.+|||+ .. +..++ +..|.||
T Consensus        57 GgG----a~k~~~~~~~~~~--v~~~k~dE~~a~~~g~~~ll~~~~~~~~~p~llvnIGsGv-Si-~~v~~~~~~Rv~G  127 (279)
T TIGR00555        57 GGG----AFKFAELIYESAG--IQLHKFDEFDALIQGLNYLLKEEPKDDIYPYLLVNIGTGT-SI-LYVDGDNYERVGG  127 (279)
T ss_pred             CCc----HHHHHHHhccccC--CcccchhHHHHHHHHHHHHhhcccCCCCCceEEEEecCCe-EE-EEEcCccEEEEcC
Confidence            432    3456666666664  4443333444433331  1      123467899999998 43 33344 5556554

This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).

>KOG1369 consensus Hexokinase [Carbohydrate transport and metabolism]

Probab=96.87  E-value=0.024  Score=55.49  Aligned_cols=132  Identities=18%  Similarity=0.039  Sum_probs=82.6

Q ss_pred             CcEEEEEEcCccceeEEEEeCccCCCCCCCCCC---eEEE---EecCCCCccccCHHHHHHHHHHHHHHHHHHcCCC-cc
Q 020972           21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLP---VLAR---AAAGCSNHNSVGEDAARETIEKVMADALLKSGSN-RS   93 (319)
Q Consensus        21 ~~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~---il~~---~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~-~~   93 (319)
                      ++-++++|.|||+.|+.++.+         .|.   +...   ...| ......+.++..+.|.+.+.+++.+.+.. ..
T Consensus        85 ~G~~lalDLGGTn~Rv~~v~L---------~g~~~~~~~~~~~~~ip-~~~m~gt~~~Lfd~Ia~~l~~F~~~~~~~~~~  154 (474)
T KOG1369|consen   85 KGKFLALDLGGTNFRVLLVKL---------GGGRTSVRMYNKIYAIP-EEIMQGTGEELFDFIARCLADFLDKMGLKGAS  154 (474)
T ss_pred             CCCEEEEecCCCceEEEEEEe---------cCCcccceeeeeeEecC-HHHHcCchHHHHHHHHHHHHHHHHHhcccccc
Confidence            568999999999999999988         343   2221   2222 22222356788899999999998876543 12


Q ss_pred             -ccceEEEeecCCCC---ch------h--------H----HHHHHHHHhhCCC-CceEEEeCcHHHHHHhh-cCCCCCeE
Q 020972           94 -AVRAVCLAVSGVNH---PT------D--------Q----QRILNWLRDIFPG-NVRLYVHNDALAALASG-TMGKLHGC  149 (319)
Q Consensus        94 -~i~~Igig~pG~~~---~~------~--------~----~~l~~~L~~~~~~-~~pv~v~NDa~aa~~g~-~~g~~~~v  149 (319)
                       .-.+.-+++|=--.   ..      .        +    .-|.+.|+++.-. -.-+.+-||....++++ +...++.+
T Consensus       155 ~l~lgFTFSfP~~Q~si~~g~L~~wTkGf~~~~~~g~Dvv~~L~eal~rr~~~~i~V~AlvNDTvGtl~~~~y~~~~~~i  234 (474)
T KOG1369|consen  155 KLPLGFTFSFPCRQTSIDKGTLIRWTKGFKATDCEGEDVVRLLREAIKRRGLFDMDVVAVVNDTVGTLMTCAYEDPNCEI  234 (474)
T ss_pred             ccccceEEeeeeeecccccceEEEecccccchhhhcchHHHHHHHHHHHcCCcceEEEEEEecCHHhHhhceecCCCcEE
Confidence             22344555553210   00      0        1    2356666655311 12378999999776654 35567789


Q ss_pred             EEEECccceeEeE
Q 020972          150 VLIAGTGTIAYGF  162 (319)
Q Consensus       150 ~v~~GTGigg~gi  162 (319)
                      -|++|||..++-+
T Consensus       235 gvI~GTGtNacY~  247 (474)
T KOG1369|consen  235 GVIFGTGTNACYM  247 (474)
T ss_pred             EEEECCCccceee
Confidence            9999999988633

>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated

Probab=96.70  E-value=0.81  Score=46.02  Aligned_cols=105  Identities=19%  Similarity=0.190  Sum_probs=70.0

Q ss_pred             EEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCC-CccccCHHH----HHHHHHHHHHHHHHHcCCCccccce
Q 020972           23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCS-NHNSVGEDA----ARETIEKVMADALLKSGSNRSAVRA   97 (319)
Q Consensus        23 ~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~-~~~~~~~~~----~~~~i~~~i~~~l~~~~~~~~~i~~   97 (319)
                      ++||||--...+.+++++.         +|+++...+.... .....-|+.    -.+.|..+++++++++++...+|.+
T Consensus         2 ~il~iets~~~~s~a~~~~---------~~~~~~~~~~~~~~~~gg~~p~~~~~~H~~~l~~~i~~~l~~~~~~~~~id~   72 (535)
T PRK09605          2 IVLGIEGTAWKTSAGIVDS---------DGDVLFNESDPYKPPSGGIHPREAAEHHAEAIPKVIKEALEEAGLKPEDIDL   72 (535)
T ss_pred             EEEEEEccccceEEEEEeC---------CCcEEEEEEeeccCCcCCCChHHHHHHHHHHHHHHHHHHHHHcCCCHhhCCE
Confidence            6999999888899999986         6778766543200 000011222    3567888999999999998889999


Q ss_pred             EEEee-cCCCCc-hhHHHHHHHHHhhCCCCceEEEeCcHHHHH
Q 020972           98 VCLAV-SGVNHP-TDQQRILNWLRDIFPGNVRLYVHNDALAAL  138 (319)
Q Consensus        98 Igig~-pG~~~~-~~~~~l~~~L~~~~~~~~pv~v~NDa~aa~  138 (319)
                      |+++. ||.... .-+....+-|...++  +|+.-.|--.+-+
T Consensus        73 iav~~gPg~~~~l~vg~~~ak~la~~~~--~~~~~v~h~~aH~  113 (535)
T PRK09605         73 VAFSQGPGLGPCLRVVATAARALALSLD--VPLIGVNHCVAHV  113 (535)
T ss_pred             EEECCCCCcHhhHHHHHHHHHHHHHHhC--CCeecccHHHHHH
Confidence            88762 442211 224556777877787  8877776655433

>PRK13320 pantothenate kinase; Reviewed

Probab=96.70  E-value=0.098  Score=47.25  Aligned_cols=117  Identities=19%  Similarity=0.163  Sum_probs=65.2

Q ss_pred             EEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceEEEee
Q 020972           23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV  102 (319)
Q Consensus        23 ~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Igig~  102 (319)
                      ++|.||+|-|++++++++.          ++++...+.+        .++....+    .++++..+    ++..+.++.
T Consensus         3 M~L~iDiGNT~ik~~~~~~----------~~~~~~~~~~--------~~~~~~~l----~~~~~~~~----~i~~i~vsS   56 (244)
T PRK13320          3 MNLVIDIGNTTTKLAVFEG----------DELLEVFVVS--------TEGVEESL----EKLLAKYP----AIRDAIVSS   56 (244)
T ss_pred             eEEEEEeCCCcEEEEEEEC----------CEEEEEEEEc--------cHHHHHHH----HHHHHHCC----CCCEEEEEe
Confidence            6999999999999999985          5666554432        12222222    23444332    466777776


Q ss_pred             cCCCCchhHHHHHHHHHhhCC-------CCceEEEeC--------cHHHHHHhhc--CCCCCeEEEEECccceeEeEe-c
Q 020972          103 SGVNHPTDQQRILNWLRDIFP-------GNVRLYVHN--------DALAALASGT--MGKLHGCVLIAGTGTIAYGFT-E  164 (319)
Q Consensus       103 pG~~~~~~~~~l~~~L~~~~~-------~~~pv~v~N--------Da~aa~~g~~--~g~~~~v~v~~GTGigg~gii-~  164 (319)
                      ..+..   ...+.+.+++.++       ...++.+..        |--++++++.  ...++.+++-+||-+ ..=++ .
T Consensus        57 Vvp~~---~~~~~~~~~~~~~~~~v~~~~~~gi~~~Y~~p~~lG~DR~~~~~aa~~~~~~~~~lVID~GTA~-Tid~v~~  132 (244)
T PRK13320         57 VVPLA---EEAFSALLKLLFAVLELDSETPLPFRNDYDTPETLGADRLALCAGARYLFPGKNVLAIDAGTAI-TYDVLDS  132 (244)
T ss_pred             cccch---HHHHHHHHHHhCCcEEECCCCCCCCceeccChhhcchhHHHHHHHHHHhcCCCCEEEEEcCCce-EEEEEcC
Confidence            66543   2345555555432       001222222        2224444432  223589999999998 43344 4


Q ss_pred             CCcEE
Q 020972          165 DGRDA  169 (319)
Q Consensus       165 dG~~~  169 (319)
                      ||+..
T Consensus       133 ~g~~~  137 (244)
T PRK13320        133 EGVYL  137 (244)
T ss_pred             CCcEE
Confidence            55543

>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]

Probab=96.58  E-value=0.011  Score=58.23  Aligned_cols=77  Identities=21%  Similarity=0.230  Sum_probs=57.1

Q ss_pred             CcEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecC------CCCccccCHHHHHHHHHHHHHHHHHHcCCCccc
Q 020972           21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAG------CSNHNSVGEDAARETIEKVMADALLKSGSNRSA   94 (319)
Q Consensus        21 ~~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~------~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~   94 (319)
                      ...++|||+|.|++|++++|..        +++.+.....+      -....+.+|.++++.+.+.|+++.++.+..+.+
T Consensus         5 ~~~~~gIDvGTtSaR~~v~~~~--------~~e~l~~~~~~i~~~~~~~~~~eq~p~eI~~~V~~ci~~~~e~l~~~~~~   76 (516)
T KOG2517|consen    5 EPVVLGIDVGTTSARALVFNAK--------NGELLSLAQKEITQEFPKEGWVEQDPKEIWQAVCRCIEKACEKLGVLNIK   76 (516)
T ss_pred             cceEEEEEcCCCceEEEEEecC--------CCccceeeeeeeeeecCCCCeEEeCHHHHHHHHHHHHHHHHHhhcccccc
Confidence            4689999999999999999932        78887665443      122335789999999999999999887765444


Q ss_pred             cce-EEEeecCC
Q 020972           95 VRA-VCLAVSGV  105 (319)
Q Consensus        95 i~~-Igig~pG~  105 (319)
                      +.+ +++|+.+-
T Consensus        77 ~~~~~~igv~~q   88 (516)
T KOG2517|consen   77 VVGATCIGVVNQ   88 (516)
T ss_pred             ccccEEEEEEec
Confidence            443 56666664

>PRK09604 UGMP family protein; Validated

Probab=96.43  E-value=0.85  Score=43.07  Aligned_cols=102  Identities=17%  Similarity=0.158  Sum_probs=68.6

Q ss_pred             EEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCcc--------ccCHHHHHHHHHHHHHHHHHHcCCCccc
Q 020972           23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHN--------SVGEDAARETIEKVMADALLKSGSNRSA   94 (319)
Q Consensus        23 ~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~--------~~~~~~~~~~i~~~i~~~l~~~~~~~~~   94 (319)
                      ++||||--...+.++++|.         +++++...+.......        +.....-.+.|..++++++++++.++.+
T Consensus         2 ~iLgIdTS~~~~sval~~~---------~~~il~~~~~~~~~~~~~~~Gi~P~~a~~~H~~~l~~~i~~~L~~~~~~~~d   72 (332)
T PRK09604          2 LILGIETSCDETSVAVVDD---------GRGLLSNVVASQIDLHARYGGVVPELASRAHVENIVPLIEEALKEAGLTLED   72 (332)
T ss_pred             eEEEEEccccceEEEEEEC---------CCcEEEEEEecchhcccccCCcCcchhHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence            5899999777788999986         6678765442211000        0112344678899999999999999999


Q ss_pred             cceEEEee-cCCCCc-hhHHHHHHHHHhhCCCCceEEEeCcHH
Q 020972           95 VRAVCLAV-SGVNHP-TDQQRILNWLRDIFPGNVRLYVHNDAL  135 (319)
Q Consensus        95 i~~Igig~-pG~~~~-~~~~~l~~~L~~~~~~~~pv~v~NDa~  135 (319)
                      |..|+++. ||.... .-.....+-|...++  +|+.--|--.
T Consensus        73 id~iavt~GPG~~tglrvg~~~Ak~La~~~~--ipl~~v~h~~  113 (332)
T PRK09604         73 IDAIAVTAGPGLVGALLVGVSFAKALALALN--KPLIGVNHLE  113 (332)
T ss_pred             CCEEEEecCCCcHHhHHHHHHHHHHHHHHhC--CCEEeecCHH
Confidence            99999886 665322 123455677777776  7866655533

>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A

Probab=96.34  E-value=0.01  Score=56.67  Aligned_cols=32  Identities=28%  Similarity=0.402  Sum_probs=28.5

Q ss_pred             cEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCC
Q 020972           22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGC   62 (319)
Q Consensus        22 ~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~   62 (319)
                      .|++|||+|+|++|++|+|.         +++++.+...++
T Consensus         2 ~y~lGIDIGSTsTKaVVmd~---------~g~Il~~~i~pT   33 (432)
T TIGR02259         2 ECFVGIDLGSTTTKAVLMDD---------KGEVIGRGITNS   33 (432)
T ss_pred             ceEEEEEcCchhEEEEEEcC---------CCcEEEEEecCC
Confidence            59999999999999999998         778988887765

This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).

>TIGR03722 arch_KAE1 universal archaeal protein Kae1

Probab=95.96  E-value=1.5  Score=41.26  Aligned_cols=104  Identities=16%  Similarity=0.163  Sum_probs=65.6

Q ss_pred             EEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCC-CccccCH----HHHHHHHHHHHHHHHHHcCCCccccceEE
Q 020972           25 LGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCS-NHNSVGE----DAARETIEKVMADALLKSGSNRSAVRAVC   99 (319)
Q Consensus        25 lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~-~~~~~~~----~~~~~~i~~~i~~~l~~~~~~~~~i~~Ig   99 (319)
                      ||||--...+.+++++.         +++++...+.... .....-|    ..-.+.|...++++++++++.+.+|..|.
T Consensus         1 Lgiets~~~~s~al~~~---------~~~i~~~~~~~~~~~~gg~~p~~~~~~H~~~l~~~i~~~l~~~~~~~~did~Ia   71 (322)
T TIGR03722         1 LGIEGTAHTFGVGIVDE---------DGEILANVSDTYVPEKGGIHPREAAEHHAEVAPKLIKEALEEAGVSLEDIDAVA   71 (322)
T ss_pred             CEEeccccceEEEEEEC---------CCeEEEEEEeecccCcCCcChhHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEE
Confidence            57887666788999986         6777764432110 0100112    23355688889999999999888999988


Q ss_pred             Eee-cCCCCc-hhHHHHHHHHHhhCCCCceEEEeCcHHHHHH
Q 020972          100 LAV-SGVNHP-TDQQRILNWLRDIFPGNVRLYVHNDALAALA  139 (319)
Q Consensus       100 ig~-pG~~~~-~~~~~l~~~L~~~~~~~~pv~v~NDa~aa~~  139 (319)
                      ++. ||.... .-+..+.+.|...++  +|+.-.|--.+-++
T Consensus        72 vt~gPg~~~~l~vg~~~ak~la~~~~--~p~~~v~h~~aHa~  111 (322)
T TIGR03722        72 FSQGPGLGPCLRVGATAARALALKLN--KPLVGVNHCVAHIE  111 (322)
T ss_pred             EecCCchHHhHHHHHHHHHHHHHHhC--CCeechhhHHHHHH
Confidence            875 553221 123455677777776  78776665544333

This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.

>PRK13324 pantothenate kinase; Reviewed

Probab=95.93  E-value=0.52  Score=42.90  Aligned_cols=125  Identities=14%  Similarity=0.142  Sum_probs=71.8

Q ss_pred             EEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceEEEeec
Q 020972           24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVS  103 (319)
Q Consensus        24 ~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Igig~p  103 (319)
                      +|.||+|-|+|+++++|.          ++++.+.+.++.... ...++.    ...+..++...+....++..+.++  
T Consensus         2 iL~iDiGNT~ik~gl~~~----------~~~~~~~r~~t~~~~-~t~de~----~~~l~~~~~~~~~~~~~i~~viis--   64 (258)
T PRK13324          2 LLVMDMGNSHIHIGVFDG----------DRIVSQIRYATSSVD-STSDQM----GVFLRQALRENSVDLGKIDGCGIS--   64 (258)
T ss_pred             EEEEEeCCCceEEEEEEC----------CEEEEEEEEecCccc-cchHHH----HHHHHHHHHhcCCCccCCCeEEEE--
Confidence            799999999999999985          456665555431221 244443    334444555555555567776554  


Q ss_pred             CCCCchhHHHHHHHHHhhCCCCceEEEeC-----------------cHHHHHHhhc--CCCCCeEEEEECccceeEeEe-
Q 020972          104 GVNHPTDQQRILNWLRDIFPGNVRLYVHN-----------------DALAALASGT--MGKLHGCVLIAGTGTIAYGFT-  163 (319)
Q Consensus       104 G~~~~~~~~~l~~~L~~~~~~~~pv~v~N-----------------Da~aa~~g~~--~g~~~~v~v~~GTGigg~gii-  163 (319)
                      -++ |.-...+.+.+.+.|+. .|+++..                 |--++++++.  ...++.+++-+||=+ ..=++ 
T Consensus        65 SVv-P~l~~~l~~~~~~~~~~-~~~~v~~~~~~l~~~y~~p~~lG~DR~~~~vaA~~~~~~~~~iViD~GTA~-T~d~v~  141 (258)
T PRK13324         65 SVV-PHLNYSLGSAVIKYFNI-KPFFISMDTTDLDMSAVEAHQVGADRIASCISAIADHPNKDLLIIDLGTAT-TFDLVT  141 (258)
T ss_pred             eCc-chhHHHHHHHHHHHhCC-CeEEEecCCccceeecCChhhccHHHHHHHHHHHHhcCCCCEEEEEcCCce-EEEEEc
Confidence            333 44555676666666752 3444422                 2222344432  223578999999987 43333 


Q ss_pred             cCCcE
Q 020972          164 EDGRD  168 (319)
Q Consensus       164 ~dG~~  168 (319)
                      .+|+.
T Consensus       142 ~~g~~  146 (258)
T PRK13324        142 KDKKY  146 (258)
T ss_pred             CCCeE
Confidence            45544

>PRK13326 pantothenate kinase; Reviewed

Probab=95.74  E-value=0.67  Score=42.30  Aligned_cols=120  Identities=14%  Similarity=0.070  Sum_probs=68.1

Q ss_pred             cEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceEEEe
Q 020972           22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLA  101 (319)
Q Consensus        22 ~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Igig  101 (319)
                      .+.|.||+|-|++++++++.          ++++...+.++. .. .+.++....+..         +.+. ++..+.++
T Consensus         6 ~~~L~IDiGNT~ik~glf~~----------~~l~~~~r~~t~-~~-~t~de~~~~l~~---------~~~~-~i~~viis   63 (262)
T PRK13326          6 SSQLIIDIGNTSISFALYKD----------NKMQIFCKLKTK-LD-LSFDELYSFLKE---------KFDF-KVNQVFVS   63 (262)
T ss_pred             cEEEEEEeCCCeEEEEEEEC----------CEEEEEEEeccC-CC-CCHHHHHHHHhc---------CCCC-CCCEEEEE
Confidence            46899999999999999985          466665555432 22 355554333332         2222 46666555


Q ss_pred             ecCCCCchhHHHHHHHHHhhCCCCceEEE------------e--------CcHHHHHHhhc--CCCCCeEEEEECcccee
Q 020972          102 VSGVNHPTDQQRILNWLRDIFPGNVRLYV------------H--------NDALAALASGT--MGKLHGCVLIAGTGTIA  159 (319)
Q Consensus       102 ~pG~~~~~~~~~l~~~L~~~~~~~~pv~v------------~--------NDa~aa~~g~~--~g~~~~v~v~~GTGigg  159 (319)
                      .-.   +.-...+.+.+++.|+. .|+++            .        .|--++++|+.  .+.++.+++-+||=+ .
T Consensus        64 SVv---p~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~y~~~~~~LGaDR~a~~vaA~~~~~~~~~iVID~GTA~-T  138 (262)
T PRK13326         64 SVV---PVIDKVLINVIFSLYKV-KPLFIGFDLNYDLSFNPYNSNKFLLGSDVFANLVGAIEYYNINDALVVDLGTAC-T  138 (262)
T ss_pred             eCc---ccHHHHHHHHHHHHhCC-CcEEEecCCccCceeecCCCCcccccHHHHHHHHHHHHhcCCCCEEEEECCCce-E
Confidence            333   43444566666665541 23332            2        23334455543  233589999999987 4


Q ss_pred             EeEe-cCCcE
Q 020972          160 YGFT-EDGRD  168 (319)
Q Consensus       160 ~gii-~dG~~  168 (319)
                      .=++ .+|+.
T Consensus       139 ~D~V~~~g~~  148 (262)
T PRK13326        139 IFAVSRQDGI  148 (262)
T ss_pred             EEEEcCCCcE
Confidence            4344 44443

>TIGR00671 baf pantothenate kinase, type III

Probab=95.63  E-value=0.83  Score=41.18  Aligned_cols=117  Identities=16%  Similarity=0.085  Sum_probs=65.9

Q ss_pred             EEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceEEEeecC
Q 020972           25 LGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVSG  104 (319)
Q Consensus        25 lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Igig~pG  104 (319)
                      |.||+|-|++++++++.          ++++...+.++. .. .+.++....+...+    .+      ++..+.++.- 
T Consensus         2 L~iDiGNT~i~~g~~~~----------~~~~~~~r~~t~-~~-~t~de~~~~l~~~~----~~------~i~~v~vsSV-   58 (243)
T TIGR00671         2 LLIDVGNTRIVFALNSG----------NKVYQFWRLATN-LM-KTYDEHSEFLKELF----GK------SLNKAFISSV-   58 (243)
T ss_pred             EEEEECCCcEEEEEEEC----------CEEEEEEEecCC-Cc-cChHHHHHHHHHHH----Hh------hCCEEEEEEc-
Confidence            78999999999999985          466665565432 22 35566544444433    22      2444444432 


Q ss_pred             CCCchhHHHHHHHHHhhCCCCceEE------------------EeCcHHHHHHhhc-CCCCCeEEEEECccceeEeEec-
Q 020972          105 VNHPTDQQRILNWLRDIFPGNVRLY------------------VHNDALAALASGT-MGKLHGCVLIAGTGTIAYGFTE-  164 (319)
Q Consensus       105 ~~~~~~~~~l~~~L~~~~~~~~pv~------------------v~NDa~aa~~g~~-~g~~~~v~v~~GTGigg~gii~-  164 (319)
                       + |.-...+.+.+++.++. .|..                  +--|--++++|+. .-.++.+++-+||=+ ..=++. 
T Consensus        59 -v-p~~~~~l~~~~~~~~~~-~~~~~~~~~~~gl~~~y~~p~~LG~DR~a~~~aA~~~~~~~~lViD~GTA~-Tid~v~~  134 (243)
T TIGR00671        59 -V-PELTEAVRNMIPKIKNI-KPEIFFPLVYDGLPNLYKSPKELGIDRVANALAAIKFYGFNVVVVDAGTAL-TIDLVDQ  134 (243)
T ss_pred             -c-CChHHHHHHHHHHHhCC-CcEEECCCccCCcccccCChhhccHHHHHHHHHHHHHcCCCEEEEEcCCce-EEEEEcC
Confidence             2 33344566667666641 2322                  2234444555543 123489999999987 444443 


Q ss_pred             CCcE
Q 020972          165 DGRD  168 (319)
Q Consensus       165 dG~~  168 (319)
                      +|+.
T Consensus       135 ~g~~  138 (243)
T TIGR00671       135 EGKF  138 (243)
T ss_pred             CCeE
Confidence            5544

This model describes a family of proteins found in a single copy in at least ten different early completed bacterial genomes. The only characterized member of the family is Bvg accessory factor (Baf), a protein required, in addition to the regulatory operon bvgAS, for heterologous transcription of the Bordetella pertussis toxin operon (ptx) in E. coli.

>PRK14878 UGMP family protein; Provisional

Probab=95.61  E-value=2  Score=40.34  Aligned_cols=100  Identities=17%  Similarity=0.157  Sum_probs=63.1

Q ss_pred             EEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCC-CccccCH----HHHHHHHHHHHHHHHHHcCCCccccceEE
Q 020972           25 LGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCS-NHNSVGE----DAARETIEKVMADALLKSGSNRSAVRAVC   99 (319)
Q Consensus        25 lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~-~~~~~~~----~~~~~~i~~~i~~~l~~~~~~~~~i~~Ig   99 (319)
                      ||||--...+.+++++.          ++++...+.... .....-|    ..-.+.|..+++++++++++++.+|.+|.
T Consensus         1 l~iets~~~~s~al~~~----------~~i~~~~~~~~~~~~gg~~p~~~~~~h~~~l~~~i~~~l~~a~~~~~did~Ia   70 (323)
T PRK14878          1 LGIESTAHTLGVGIVKE----------DKVLANVRDTYVPEKGGIHPREAAQHHAEVAPELLRKALEKAGISIEDIDAVA   70 (323)
T ss_pred             CEEecCCcccEEEEEEC----------CEEEEEEEEecccCcCCcCccHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEE
Confidence            57887777788888874          446665443110 0000111    23345688899999999999989999988


Q ss_pred             Eee-cCCCCc-hhHHHHHHHHHhhCCCCceEEEeCcHHH
Q 020972          100 LAV-SGVNHP-TDQQRILNWLRDIFPGNVRLYVHNDALA  136 (319)
Q Consensus       100 ig~-pG~~~~-~~~~~l~~~L~~~~~~~~pv~v~NDa~a  136 (319)
                      ++. ||.... .-+....+-|...++  +|+.-.|--.+
T Consensus        71 vt~gPG~~~~lrvg~~~Ak~la~~~~--~p~~~v~h~~~  107 (323)
T PRK14878         71 VSQGPGLGPALRVGATAARALALKYN--KPLVPVNHCIA  107 (323)
T ss_pred             EecCCCcccchHHHHHHHHHHHHHhC--CCccccchHHH
Confidence            875 664321 123455667777776  78766665544

>PRK13331 pantothenate kinase; Reviewed

Probab=95.53  E-value=1.1  Score=40.64  Aligned_cols=121  Identities=12%  Similarity=-0.104  Sum_probs=67.2

Q ss_pred             cccCCCcEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCcccc
Q 020972           16 EESGGREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAV   95 (319)
Q Consensus        16 ~~~~m~~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i   95 (319)
                      |+.+....+|.||+|-|+|++++++.          .+++...+  + +.. ...+         +..++...+....++
T Consensus         1 ~~~~~~~~~L~iDiGNT~~~~g~f~~----------~~~~~~~r--t-~~~-~t~d---------~~~~l~~~~~~~~~i   57 (251)
T PRK13331          1 MMFHTSNEWLALMIGNSRLHWGYFSG----------ETLVKTWD--T-PHL-DESI---------IQLLLPGQTLLIVAP   57 (251)
T ss_pred             CCCCCCCcEEEEEeCCCcEEEEEEEC----------CEEEEEEE--c-CCc-chHH---------HHHHHHHcCCCcccc
Confidence            34444557999999999999999985          35555434  2 221 1222         445666666655567


Q ss_pred             ceEEEeecCCCCchhHHHHHHHHHhhCCCCceE------------EEeCcHHHHHHhhc-CCCCCeEEEEECccceeEeE
Q 020972           96 RAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRL------------YVHNDALAALASGT-MGKLHGCVLIAGTGTIAYGF  162 (319)
Q Consensus        96 ~~Igig~pG~~~~~~~~~l~~~L~~~~~~~~pv------------~v~NDa~aa~~g~~-~g~~~~v~v~~GTGigg~gi  162 (319)
                      ..+.++.--+.   -...+    ++.++. .|+            .+--|--++++|+. +-..+.+++-+||=+ ..=+
T Consensus        58 ~~~iisSVVP~---~~~~~----~~~~~~-~~~~v~~~~l~~~yp~lG~DR~~~~vaA~~~~~~~~iVID~GTA~-T~D~  128 (251)
T PRK13331         58 NPLVIASVVPQ---QTELW----QTYPNV-RLITLDDIPLNNLYPTLGIDRALALWGAGQTYGFPCLVIDAGTAL-TFTG  128 (251)
T ss_pred             CEEEEEecCcc---HHHHH----HHhcCC-ceEEecCCCCccCCCCccHHHHHHHHHHHHHhCCCEEEEECCCce-EEEE
Confidence            77666543221   11112    333331 232            33344445555543 223578999999987 4434


Q ss_pred             e-cCCcE
Q 020972          163 T-EDGRD  168 (319)
Q Consensus       163 i-~dG~~  168 (319)
                      + .+|+.
T Consensus       129 V~~~g~~  135 (251)
T PRK13331        129 VDSDRTL  135 (251)
T ss_pred             EcCCCcE
Confidence            3 34544

>PRK12440 acetate kinase; Reviewed

Probab=95.42  E-value=0.33  Score=46.72  Aligned_cols=139  Identities=12%  Similarity=0.088  Sum_probs=84.8

Q ss_pred             CeEEEEECccceeEeEecCCcEEe-eCCCCCccCCcCChHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHcCCCChhhHH
Q 020972          147 HGCVLIAGTGTIAYGFTEDGRDAR-AAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELI  225 (319)
Q Consensus       147 ~~v~v~~GTGigg~gii~dG~~~r-aGg~Ghl~gd~Gsa~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~~~~~l~  225 (319)
                      +.|+.-+|.|+.-+ -+.||+.+- .-|++-+-|=-              .....|..++. +...+.+. + .+.+++.
T Consensus       202 ~~Iv~HLG~G~Si~-Ai~~GksvDtsmG~tPl~GL~--------------MgtRsG~idp~-vv~~l~~~-~-~s~~e~~  263 (397)
T PRK12440        202 SFISVHLGNGASVC-AIKNGQSVDTSMGFTPLSGLM--------------MGTRCGDLDPG-IIEFLLKK-G-WSQEKVF  263 (397)
T ss_pred             CEEEEEeCCCcEee-eeeCCEEEEcCCCCCCCCCCC--------------CCCcCCCCCHH-HHHHHHHc-C-CCHHHHH
Confidence            78999999998665 458999764 33333322100              00011111222 22223332 2 2445555


Q ss_pred             HHhccCCC---hHHHhchhHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhcccccccEEEEcch
Q 020972          226 GWTYVDPS---WARIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEGVTYTKILKEKVPLLMENIL  302 (319)
Q Consensus       226 ~~~~~~~~---~~~~a~~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~la~li~~l~~~~~~~~~~~~~~~~~~ivl~Gg~  302 (319)
                      ..++++..   -..+....+.|.+++++||+.|+-.++-++..+++.|..+...++-             -.-||+.||+
T Consensus       264 ~~Ln~~SGLlg~sG~s~D~R~l~~~~~~gd~~A~lA~d~f~yri~k~Ig~~~a~l~g-------------vDaiVFTgGI  330 (397)
T PRK12440        264 NSLNKKSGFLGVSGLTSDARGILEAMEEGHEGATLAFEVFTYRVAKYIASYLAALDS-------------LDGIIFTGGI  330 (397)
T ss_pred             HHHhccccceEecCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhCC-------------CCEEEECCcc
Confidence            55543211   0111123577878888999999999999999999999999988863             2479999999


Q ss_pred             hhhcHHHHHHHHhhc
Q 020972          303 FLLSWLVVFLKLIEG  317 (319)
Q Consensus       303 ~~~~~~~~~~~~~~~  317 (319)
                      - .+...+...++++
T Consensus       331 G-en~~~vr~~i~~~  344 (397)
T PRK12440        331 G-ENSLPIRREILKN  344 (397)
T ss_pred             c-cCcHHHHHHHHhh
Confidence            9 5555666666654

>TIGR00016 ackA acetate kinase

Probab=95.23  E-value=0.49  Score=45.73  Aligned_cols=141  Identities=14%  Similarity=0.127  Sum_probs=84.2

Q ss_pred             CeEEEEECccceeEeEecCCcEEe-eCCCCCccCCcCChHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHcCCCChhhHH
Q 020972          147 HGCVLIAGTGTIAYGFTEDGRDAR-AAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELI  225 (319)
Q Consensus       147 ~~v~v~~GTGigg~gii~dG~~~r-aGg~Ghl~gd~Gsa~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~~~~~l~  225 (319)
                      +.|++-+|.|+.-+ -+.||+.+- .-|+.-+-|-. +             ....|..++..+. .+.+..+ .+.+++.
T Consensus       207 ~~Iv~HLG~G~Si~-Ai~~GksvDTsmG~tpLeGl~-m-------------gtRsG~lDp~~~~-~l~~~~~-~s~~e~~  269 (404)
T TIGR00016       207 NLIVCHLGNGASVC-AVKNGKSIDTSMGFTPLEGLM-M-------------GTRSGDIDPAIIS-YLAETLG-MSADDIE  269 (404)
T ss_pred             CEEEEEeCCCceee-eeeCCEEEEeCCCCCCccCCC-C-------------CCCCCCCChHHHH-HHHHhcC-CCHHHHH
Confidence            78999999998665 458999764 21221111100 0             0011112222221 1222222 1445555


Q ss_pred             HHhccCCC---hHHHhchhHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhcccccccEEEEcch
Q 020972          226 GWTYVDPS---WARIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEGVTYTKILKEKVPLLMENIL  302 (319)
Q Consensus       226 ~~~~~~~~---~~~~a~~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~la~li~~l~~~~~~~~~~~~~~~~~~ivl~Gg~  302 (319)
                      ..++.+..   -..+....+.|.+++++||+.|+..++-++..+++.|..+...++-  +          -.-||+.||+
T Consensus       270 ~~Ln~~SGLlg~sG~s~D~Rel~~~~~~gd~~A~lA~~~f~yri~k~Iga~~a~L~G--~----------vDaiVFTGGI  337 (404)
T TIGR00016       270 NTLNKKSGLLGISGLSSDLRDIEDAYAEGNEQAQLAIKMYVHRIAKYIGSYIASLEG--N----------LDAIVFTGGI  337 (404)
T ss_pred             HHHhhcccceEecCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhCC--C----------CCEEEEcCcc
Confidence            55543211   0111223677878888999999999999999999999999998872  1          1379999999


Q ss_pred             hhhcHHHHHHHHhhc
Q 020972          303 FLLSWLVVFLKLIEG  317 (319)
Q Consensus       303 ~~~~~~~~~~~~~~~  317 (319)
                      - .....+...++++
T Consensus       338 G-Ens~~vr~~i~~~  351 (404)
T TIGR00016       338 G-ENAATVRELVLEA  351 (404)
T ss_pred             c-cCCHHHHHHHHhh
Confidence            8 5556777777664

Acetate kinase is involved in the activation of acetate to acetyl CoA and in the secretion of acetate. It catalyzes the reaction ATP + acetate = ADP + acetyl phosphate. Some members of this family have been shown to act on propionate as well as acetate. An example of a propionate/acetate kinase is TdcD of E. coli, an enzyme of an anaerobic pathway of threonine catabolism. It is not known how many members of this family act on additional substrates besides acetate.

>PLN02666 5-oxoprolinase

Probab=95.02  E-value=0.093  Score=57.67  Aligned_cols=55  Identities=18%  Similarity=0.113  Sum_probs=35.7

Q ss_pred             CcEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHH
Q 020972           21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADAL   85 (319)
Q Consensus        21 ~~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l   85 (319)
                      +.|.+|||+|||.|.++++|.         ++.-+...+.+++.+. ...+.+++-|.+++++++
T Consensus         8 ~~~rigIDvGGTFTD~v~~~~---------~~~~~~~~K~~sttp~-d~~~gv~~Gi~~~l~~~~   62 (1275)
T PLN02666          8 RKFRFCIDRGGTFTDVYAEVP---------GGSDFRVLKLLSVDPA-NYDDAPREGIRRILEEVT   62 (1275)
T ss_pred             CCEEEEEECCcCCEeEEEEec---------CCCeEEEEEeCCCCCC-ChhHHHHHHHHHHHHHHh
Confidence            358999999999999999997         5553445555543231 222445666666655543

>smart00842 FtsA Cell division protein FtsA

Probab=95.01  E-value=0.18  Score=43.44  Aligned_cols=73  Identities=23%  Similarity=0.287  Sum_probs=49.9

Q ss_pred             EEEEEcCccceeEEEEeCccCCCCCCCCC--CeEEEEecCCCCc---cccCHHHHHHHHHHHHHHHHHHcCCCccccceE
Q 020972           24 ILGLDGGTTSTVCICMPVISMSDSLPDPL--PVLARAAAGCSNH---NSVGEDAARETIEKVMADALLKSGSNRSAVRAV   98 (319)
Q Consensus        24 ~lGIDiGGTk~~~~l~d~~~~~~~~~~~G--~il~~~~~~~~~~---~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~I   98 (319)
                      ++|+|+|.|++++++....       +++  +++.....++...   .=.+.+.+.+.|.++++++-+.++.   ++..+
T Consensus         1 ~~~lDIGs~~ik~vv~~~~-------~~~~~~i~g~~~~~s~gi~~G~I~d~~~~~~~I~~ai~~ae~~~~~---~i~~V   70 (187)
T smart00842        1 IVGLDIGTSKIKALVAEVD-------EDGEINVIGVGEVPSRGIRKGVIVDIEAAARAIREAVEEAERMAGV---KIDSV   70 (187)
T ss_pred             CEEEEeccceEEEEEEEEc-------CCCCEEEEEEEEecCCCccCcEEECHHHHHHHHHHHHHHHHHHhCC---cccEE
Confidence            4799999999999988641       034  5555555543211   0135677888888888888777665   46678


Q ss_pred             EEeecCCC
Q 020972           99 CLAVSGVN  106 (319)
Q Consensus        99 gig~pG~~  106 (319)
                      .+++||..
T Consensus        71 ~v~i~g~~   78 (187)
T smart00842       71 YVGISGRH   78 (187)
T ss_pred             EEEEcCCc
Confidence            89999963

FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.

>PRK12379 propionate/acetate kinase; Provisional

Probab=94.71  E-value=0.58  Score=45.09  Aligned_cols=140  Identities=14%  Similarity=0.084  Sum_probs=83.8

Q ss_pred             CeEEEEECccceeEeEecCCcEEe-eCCCCCccCCcCChHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHcCCCChhhHH
Q 020972          147 HGCVLIAGTGTIAYGFTEDGRDAR-AAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELI  225 (319)
Q Consensus       147 ~~v~v~~GTGigg~gii~dG~~~r-aGg~Ghl~gd~Gsa~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~~~~~l~  225 (319)
                      +.|+.-+|.|+.-+ -+.||+.+- .=|+.-+-|-. +             ....|..++..+. .+.+..+ .+.+++.
T Consensus       198 ~lIv~HLG~G~Si~-Ai~~GksvDtsmG~tPleGl~-m-------------gtRsG~ldp~~l~-~l~~~~~-~s~~el~  260 (396)
T PRK12379        198 GLVVAHLGNGASIC-AVRNGQSVDTSMGMTPLEGLM-M-------------GTRSGDVDFGAMA-WIASQTG-QTLGDLE  260 (396)
T ss_pred             CEEEEEeCCCcchh-eeeCCEEEEeCCCCCcccCCC-C-------------CCCCCCCChHHHH-HHHHhcC-CCHHHHH
Confidence            78999999998665 458999764 11111000100 0             0011112222221 1222222 2445555


Q ss_pred             HHhccCCC---hHHHhchhHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhcccccccEEEEcch
Q 020972          226 GWTYVDPS---WARIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEGVTYTKILKEKVPLLMENIL  302 (319)
Q Consensus       226 ~~~~~~~~---~~~~a~~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~la~li~~l~~~~~~~~~~~~~~~~~~ivl~Gg~  302 (319)
                      ..++.+..   -..+....+.|.+++.+||+.|+.+++-++..+++.|..+...++-             -.-||+.||+
T Consensus       261 ~~Lnk~SGLlg~sG~s~D~R~v~~~~~~gd~~A~lA~d~f~yri~k~IGa~~a~L~~-------------vDaIVFTGGI  327 (396)
T PRK12379        261 RVVNKESGLLGISGLSSDLRVLEKAWHEGHERAQLAIKTFVHRIARHIAGHAASLHR-------------LDGIIFTGGI  327 (396)
T ss_pred             HHHhccccceEecCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhCC-------------CCEEEECCcc
Confidence            55543211   0111123577888888999999999999999999999999988863             2379999999


Q ss_pred             hhhcHHHHHHHHhhc
Q 020972          303 FLLSWLVVFLKLIEG  317 (319)
Q Consensus       303 ~~~~~~~~~~~~~~~  317 (319)
                      . .+...+...++++
T Consensus       328 G-en~~~vR~~i~~~  341 (396)
T PRK12379        328 G-ENSSLIRRLVMEH  341 (396)
T ss_pred             c-cCcHHHHHHHHhh
Confidence            9 6666777777764

>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X

Probab=94.69  E-value=0.12  Score=50.23  Aligned_cols=68  Identities=24%  Similarity=0.236  Sum_probs=45.7

Q ss_pred             EEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccc---------------cC-H----HHHHHHHHHHHH
Q 020972           23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNS---------------VG-E----DAARETIEKVMA   82 (319)
Q Consensus        23 ~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~---------------~~-~----~~~~~~i~~~i~   82 (319)
                      |-++||+|.|++.+.++|+.        +|+++......  |++.               .+ .    ..+++.|.++++
T Consensus         2 ~GiAvDiGTTti~~~L~dl~--------~G~~l~~~s~~--NpQ~~~GaDViSRI~~a~~~~~~~~L~~~i~~~i~~li~   71 (412)
T PF14574_consen    2 YGIAVDIGTTTIAAYLVDLE--------TGEVLATASFL--NPQRAYGADVISRISYALSPEGLEELQRLIRETINELIE   71 (412)
T ss_dssp             EEEEEEE-SSEEEEEEEETT--------T--EEEEEEEE---GGGGT-SSHHHHHHHHH-TTHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEcchhheeeEEEECC--------CCCEEEeeccc--CCCCCcchHHHHHHHHhcCCchHHHHHHHHHHHHHHHHH
Confidence            67999999999999999984        89999887753  3321               01 1    234566777777


Q ss_pred             HHHHHcCCCccccceEEE
Q 020972           83 DALLKSGSNRSAVRAVCL  100 (319)
Q Consensus        83 ~~l~~~~~~~~~i~~Igi  100 (319)
                      +++.++++++++|..+.|
T Consensus        72 ~l~~~~gi~~~~I~~i~i   89 (412)
T PF14574_consen   72 ELLEKAGISPEDIYEIVI   89 (412)
T ss_dssp             HHHHHHT--GGGEEEEEE
T ss_pred             HHHHHcCCCHHHeEEEEE
Confidence            788888999889988665

>PRK07157 acetate kinase; Provisional

Probab=94.64  E-value=0.95  Score=43.69  Aligned_cols=142  Identities=13%  Similarity=0.095  Sum_probs=82.9

Q ss_pred             CCeEEEEECccceeEeEecCCcEEe-eCCCCCccCCcCChHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHcCCCChhhH
Q 020972          146 LHGCVLIAGTGTIAYGFTEDGRDAR-AAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDEL  224 (319)
Q Consensus       146 ~~~v~v~~GTGigg~gii~dG~~~r-aGg~Ghl~gd~Gsa~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~~~~~l  224 (319)
                      .+.|+.-+|.|+.-+ -+.||+.+- .-|+--+-|-. +             ....|..++..+. .+.+..+ .+.+++
T Consensus       199 ~~~Iv~HLG~G~Si~-Ai~~GksvDtsmG~tpLeGl~-m-------------gtRsG~ldp~~~~-~l~~~~~-~s~~e~  261 (400)
T PRK07157        199 VNFVNLHIGNGASLC-AIKNSKSIDTSMGLTPLAGVM-M-------------GTRSGDIDPSIHE-FVAKEAN-MSISEF  261 (400)
T ss_pred             cCEEEEEeCCCceee-eeeCCeEEEeCCCCCCccCCC-C-------------CCCCCCCChHHHH-HHHHhcC-CCHHHH
Confidence            378999999998665 458999764 11111100100 0             0011111122111 1222222 144455


Q ss_pred             HHHhccCCC---hHHHhchhHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhcccccccEEEEcc
Q 020972          225 IGWTYVDPS---WARIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEGVTYTKILKEKVPLLMENI  301 (319)
Q Consensus       225 ~~~~~~~~~---~~~~a~~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~la~li~~l~~~~~~~~~~~~~~~~~~ivl~Gg  301 (319)
                      ...++++..   -..+....+.|.+++.+||+.|+-.++-++..+++.|..+...++=  +          -.-||+.||
T Consensus       262 ~~~Ln~~SGLlg~sG~s~D~R~l~~~~~~gd~~A~lA~d~f~yri~k~Ig~~~a~L~G--~----------vDaiVFTgG  329 (400)
T PRK07157        262 TDLLNKKSGLLGVSGISSDLRDVIKAAESGNKRAKFALDLYAQKIVDYLANYINKIGK--K----------IDAIVFTAG  329 (400)
T ss_pred             HHHHhhccCceEecCCCCcHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhCC--C----------CCEEEECCc
Confidence            554443211   0111123577878888999999999999999999999999998871  0          147999999


Q ss_pred             hhhhcHHHHHHHHhhc
Q 020972          302 LFLLSWLVVFLKLIEG  317 (319)
Q Consensus       302 ~~~~~~~~~~~~~~~~  317 (319)
                      +- .+...+...++++
T Consensus       330 IG-en~~~vr~~i~~~  344 (400)
T PRK07157        330 VG-ENSAFVRELVINK  344 (400)
T ss_pred             cc-cCcHHHHHHHHhh
Confidence            99 5555666666653

>PRK09472 ftsA cell division protein FtsA; Reviewed

Probab=94.53  E-value=0.31  Score=47.56  Aligned_cols=74  Identities=16%  Similarity=0.297  Sum_probs=50.5

Q ss_pred             cEEEEEEcCccceeEEEEeCccCCCCCCCCC--CeEEEEecCCCCcc---ccCHHHHHHHHHHHHHHHHHHcCCCccccc
Q 020972           22 EVILGLDGGTTSTVCICMPVISMSDSLPDPL--PVLARAAAGCSNHN---SVGEDAARETIEKVMADALLKSGSNRSAVR   96 (319)
Q Consensus        22 ~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G--~il~~~~~~~~~~~---~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~   96 (319)
                      ..++|+|+|.||+++++.....       ++  +++...+.++....   =.+.+.+.+.|.++++++-..++.   ++.
T Consensus         8 ~~i~~lDIGsskv~~vv~~~~~-------~~~~~i~g~~~~~s~gi~~G~I~d~~~~~~aI~~av~~ae~~~g~---~i~   77 (420)
T PRK09472          8 KLVVGLEIGTAKVAALVGEVLP-------DGMVNIIGVGSCPSRGMDKGGVNDLESVVKCVQRAIDQAELMADC---QIS   77 (420)
T ss_pred             CEEEEEEcccceEEEEEEEEcC-------CCCEEEEEEEEccCCCccCCEEEcHHHHHHHHHHHHHHHHHHhCC---ccc
Confidence            4799999999999998776310       34  44555555432110   135678888888888887766664   567


Q ss_pred             eEEEeecCC
Q 020972           97 AVCLAVSGV  105 (319)
Q Consensus        97 ~Igig~pG~  105 (319)
                      .+.+++||.
T Consensus        78 ~v~v~i~g~   86 (420)
T PRK09472         78 SVYLALSGK   86 (420)
T ss_pred             EEEEEecCc
Confidence            778888886

>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]

Probab=94.44  E-value=1.1  Score=40.64  Aligned_cols=122  Identities=19%  Similarity=0.161  Sum_probs=71.0

Q ss_pred             EEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceEEEeec
Q 020972           24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVS  103 (319)
Q Consensus        24 ~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Igig~p  103 (319)
                      .|.||+|-|++++++.+          +++.....+..+ +.. ...++.-    ..+..++...  ...++.++.+  +
T Consensus         2 ~L~iDiGNT~~~~a~~~----------~~~~~~~~r~~t-~~~-~~~del~----~~~~~l~~~~--~~~~~~~~~i--s   61 (251)
T COG1521           2 LLLIDIGNTRIVFALYE----------GGKVVQTWRLAT-EDL-LTEDELG----LQLHNLFDGN--SVRDIDGIVI--S   61 (251)
T ss_pred             eEEEEeCCCeEEEEEec----------CCeEEEEEeecc-ccc-ccHHHHH----HHHHHHhccc--ccccccccee--e
Confidence            68999999999999987          477777777543 332 2344433    3333444332  3346666655  3


Q ss_pred             CCCCchhHHHHHHHHHhhCCCCceEEE-------------------eCcHHHHHHhhc--CCCCCeEEEEECccceeEeE
Q 020972          104 GVNHPTDQQRILNWLRDIFPGNVRLYV-------------------HNDALAALASGT--MGKLHGCVLIAGTGTIAYGF  162 (319)
Q Consensus       104 G~~~~~~~~~l~~~L~~~~~~~~pv~v-------------------~NDa~aa~~g~~--~g~~~~v~v~~GTGigg~gi  162 (319)
                      -.+ +.-...++..+++.|+. .|.++                   --|--++++++.  .+ ...++|-+||-+ ..-+
T Consensus        62 svv-p~~~~~~~~~~~~~f~~-~~~~~~~~~~~~g~~~~~~~p~elG~DR~~n~vaA~~~~~-~~~vVVD~GTA~-Tid~  137 (251)
T COG1521          62 SVV-PPLGIFLEAVLKEYFKV-KPLVVISPKQLLGIRVLYDNPEELGADRIANAVAAYHKYG-KAVVVVDFGTAT-TIDL  137 (251)
T ss_pred             ccC-ccHHHHHHHHHHHHhcc-CceeeechhhccCCcccCCChhhhcHHHHHHHHHHHHHcC-CcEEEEEcCCeE-EEEE
Confidence            344 44455667777777652 34322                   223334455443  23 348999999987 4445


Q ss_pred             ecCCcEE
Q 020972          163 TEDGRDA  169 (319)
Q Consensus       163 i~dG~~~  169 (319)
                      +.++..+
T Consensus       138 v~~~~~~  144 (251)
T COG1521         138 VDEGGRY  144 (251)
T ss_pred             EcCCCcE
Confidence            5555544

>PRK00180 acetate kinase A/propionate kinase 2; Reviewed

Probab=94.40  E-value=1  Score=43.66  Aligned_cols=141  Identities=18%  Similarity=0.151  Sum_probs=82.6

Q ss_pred             CeEEEEECccceeEeEecCCcEEe-eCCCCCccCCcCChHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHcCCCChhhHH
Q 020972          147 HGCVLIAGTGTIAYGFTEDGRDAR-AAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELI  225 (319)
Q Consensus       147 ~~v~v~~GTGigg~gii~dG~~~r-aGg~Ghl~gd~Gsa~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~~~~~l~  225 (319)
                      +.|+.-+|.|+.-+ -+.||+.+- .-|+--+   +|-  -         .....|..++..+... .+..+ -+.+++.
T Consensus       203 ~lIvaHLG~GaSi~-Ai~~GrsvDtsmG~tpl---eGl--~---------m~tRsG~ldp~~v~~l-~~~~~-~s~~el~  265 (402)
T PRK00180        203 NLITCHLGNGASIA-AIKNGKSVDTSMGFTPL---EGL--V---------MGTRSGDIDPAIIPYL-MEKLG-MSVDEID  265 (402)
T ss_pred             CEEEEEeCCCceee-eeeCCEEEEeCCCCCcc---cCC--C---------CCCCCCCCChHHHHHH-HHhcC-CCHHHHH
Confidence            78999999999665 458999764 1111100   110  0         0001122222222221 12212 1445555


Q ss_pred             HHhccCCCh---HHHhchhHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhcccccccEEEEcch
Q 020972          226 GWTYVDPSW---ARIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEGVTYTKILKEKVPLLMENIL  302 (319)
Q Consensus       226 ~~~~~~~~~---~~~a~~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~la~li~~l~~~~~~~~~~~~~~~~~~ivl~Gg~  302 (319)
                      ..++.+...   ..+....+.|.+.+.+||+.|+.+++-++..+++.|..+...|+-  +          -..||+.||+
T Consensus       266 ~~L~~~sGLlg~sG~s~D~Rel~~~~~~gd~~A~lA~d~f~yri~k~Iga~~a~L~g--~----------vDaiVfTGGI  333 (402)
T PRK00180        266 NLLNKKSGLLGLSGVSSDMRDIEAAAEEGDERAKLALDVFVYRLAKYIGSYAAALNG--R----------LDAIVFTAGI  333 (402)
T ss_pred             HHHhccccceEecCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhcC--C----------CCEEEEcCcc
Confidence            555432210   111123577877778899999999999999999999999998832  1          2479999999


Q ss_pred             hhhcHHHHHHHHhhc
Q 020972          303 FLLSWLVVFLKLIEG  317 (319)
Q Consensus       303 ~~~~~~~~~~~~~~~  317 (319)
                      . .....+...++++
T Consensus       334 g-E~s~~lr~~I~~~  347 (402)
T PRK00180        334 G-ENSALVREKVLEG  347 (402)
T ss_pred             c-cCCHHHHHHHHhh
Confidence            8 4555666666653

>KOG2707 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]

Probab=94.24  E-value=5  Score=37.93  Aligned_cols=126  Identities=17%  Similarity=0.110  Sum_probs=82.4

Q ss_pred             ccccCcccccccccccCCCcEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEe---------cCCCCccccCHHHH
Q 020972            3 RYRNGEIWDFETAEESGGREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAA---------AGCSNHNSVGEDAA   73 (319)
Q Consensus         3 ~~~~~~~~~~~~~~~~~m~~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~---------~~~~~~~~~~~~~~   73 (319)
                      .||++-+..|.=-.++.-...+|||+-.=.-|.++++|.         .++++....         .+...|. .-.+.-
T Consensus        13 ~~r~~~lr~f~~~~~tr~sy~VLgIETSCDDTavaVVd~---------~~~~~~~~i~~~t~~~~~yGGI~P~-~a~~~H   82 (405)
T KOG2707|consen   13 SYRINFLRLFRCFIRTRLSYKVLGIETSCDDTAVAVVDE---------FSHVLSSEIYSRTEIHRQYGGIIPT-VAQLLH   82 (405)
T ss_pred             ccchhHHHHhccchhhhhheeeeeEecccCcceeeeecc---------cccccchhhhhhhHHHHhhCCCCCh-HHHHHH
Confidence            455555555553344444433999998888899999998         777776522         1122221 122344


Q ss_pred             HHHHHHHHHHHHHHcCCCccccceEEEee-cCCC-CchhHHHHHHHHHhhCCCCceEEEeCcHHHHHHh
Q 020972           74 RETIEKVMADALLKSGSNRSAVRAVCLAV-SGVN-HPTDQQRILNWLRDIFPGNVRLYVHNDALAALAS  140 (319)
Q Consensus        74 ~~~i~~~i~~~l~~~~~~~~~i~~Igig~-pG~~-~~~~~~~l~~~L~~~~~~~~pv~v~NDa~aa~~g  140 (319)
                      .++|..++++++++++..+.++.+|++-. ||.. .-..+..+..-|...+.  .|+.=.+-..+-++.
T Consensus        83 r~ni~~~iqral~aa~~~p~dldaIAVT~gPGl~lsL~vGl~fA~glA~~l~--kPlipVHHMeAHAL~  149 (405)
T KOG2707|consen   83 RENIPRLIQRALDAAGLSPKDLDAIAVTRGPGLPLSLKVGLSFAKGLAVKLQ--KPLIPVHHMEAHALS  149 (405)
T ss_pred             HHHHHHHHHHHHHHcCCCcccceeEEEecCCCceeehhhhHHHHHHHHHhcc--CCccchhHHHHhHHH
Confidence            67899999999999999999999988752 5543 22345666677777776  677666666665554

>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon

Probab=94.17  E-value=1.1  Score=43.91  Aligned_cols=99  Identities=14%  Similarity=0.224  Sum_probs=57.4

Q ss_pred             EEEEEEcCccceeEEEEeCcc---CC----CCCCC-CCCeEEEEecCCCCccccCHHHH-HHHHHHHHHHHHHHcCCCcc
Q 020972           23 VILGLDGGTTSTVCICMPVIS---MS----DSLPD-PLPVLARAAAGCSNHNSVGEDAA-RETIEKVMADALLKSGSNRS   93 (319)
Q Consensus        23 ~~lGIDiGGTk~~~~l~d~~~---~~----~~~~~-~G~il~~~~~~~~~~~~~~~~~~-~~~i~~~i~~~l~~~~~~~~   93 (319)
                      .-+|||||.|.|.+++-.+..   ++    +++.= +-+++.+..+-.++.  .+...+ .+.+.+.|++-.+++++.++
T Consensus         4 ~SVGIDIGTSTTQlvfSrl~l~n~a~~~~vPri~I~dkeViYrS~I~fTPl--~~~~~ID~~al~~iv~~eY~~Agi~p~   81 (473)
T PF06277_consen    4 LSVGIDIGTSTTQLVFSRLTLENRASGFSVPRIEIVDKEVIYRSPIYFTPL--LSQTEIDAEALKEIVEEEYRKAGITPE   81 (473)
T ss_pred             EEEEEeecCCceeEEEEEeEEEeccCCCccceEEEeccEEEecCCccccCC--CCCCccCHHHHHHHHHHHHHHcCCCHH
Confidence            468999999999987765311   00    11110 122333322211111  111111 35677888888999999999


Q ss_pred             ccceEEEeecCCCCc-hhHHHHHHHHHhhCC
Q 020972           94 AVRAVCLAVSGVNHP-TDQQRILNWLRDIFP  123 (319)
Q Consensus        94 ~i~~Igig~pG~~~~-~~~~~l~~~L~~~~~  123 (319)
                      +|..=.|=+.|---. ++..++...|.+..+
T Consensus        82 ~I~TGAVIITGETArKeNA~~v~~~Ls~~aG  112 (473)
T PF06277_consen   82 DIDTGAVIITGETARKENAREVLHALSGFAG  112 (473)
T ss_pred             HCccccEEEecchhhhhhHHHHHHHHHHhcC
Confidence            997655556775433 344678888888776

The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.

>PRK13322 pantothenate kinase; Reviewed

Probab=94.16  E-value=1.5  Score=39.60  Aligned_cols=116  Identities=16%  Similarity=0.126  Sum_probs=63.8

Q ss_pred             EEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceEEEeec
Q 020972           24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVS  103 (319)
Q Consensus        24 ~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Igig~p  103 (319)
                      +|-||+|-|++|+++++.         +++++.+.+    ..  .+.++....+.    .+      +..++..+.++.-
T Consensus         2 ~L~IDiGNT~iK~~l~~~---------~~~~~~~~~----~~--~t~~~~~~~l~----~~------~~~~i~~v~vsSV   56 (246)
T PRK13322          2 ILELDCGNSRLKWRVIDN---------GGQIIEHGA----HL--DSPAELLLGLA----NL------ASLAPTRCRIVSV   56 (246)
T ss_pred             EEEEEeCCCcEEEEEEcC---------CCchhhhcc----cc--CCHHHHHHHHH----hC------CccCCCEEEEEeC
Confidence            799999999999999985         455544322    11  23444333321    11      1224666666543


Q ss_pred             CCCCchhHHHHHHHHHhhCCCCceEEEeCcHH-------------------HHHHhhc-CCCCCeEEEEECccceeEeEe
Q 020972          104 GVNHPTDQQRILNWLRDIFPGNVRLYVHNDAL-------------------AALASGT-MGKLHGCVLIAGTGTIAYGFT  163 (319)
Q Consensus       104 G~~~~~~~~~l~~~L~~~~~~~~pv~v~NDa~-------------------aa~~g~~-~g~~~~v~v~~GTGigg~gii  163 (319)
                      .  .+.....+.+.+++.++. .|.++..+..                   ++++|+. +-.++.+++-+||=+ ..=++
T Consensus        57 ~--p~~~~~~l~~~l~~~~~~-~~~~v~~~~~~~gv~~~y~~p~~LG~DR~~~~~aA~~~~~~~~lViD~GTA~-TiD~v  132 (246)
T PRK13322         57 L--SEEETARLVAILEKRLGI-PVVFAKVAAELAGVRNGYEDPEQLGIDRWLALLGAFHLAKNACLVIDCGTAV-TIDLV  132 (246)
T ss_pred             C--CHHHHHHHHHHHHHHhCC-CeEEEecCCcCCCceecCCChhhccHHHHHHHHHHHHHcCCCEEEEEcCCee-EEEEE
Confidence            3  223345677888777652 3445544433                   2333332 123457889999987 44344


Q ss_pred             c-CCcE
Q 020972          164 E-DGRD  168 (319)
Q Consensus       164 ~-dG~~  168 (319)
                      . ||+.
T Consensus       133 ~~~g~~  138 (246)
T PRK13322        133 DADGQH  138 (246)
T ss_pred             cCCCcE
Confidence            3 5544

>TIGR02627 rhamnulo_kin rhamnulokinase

Probab=94.00  E-value=0.049  Score=53.64  Aligned_cols=67  Identities=13%  Similarity=0.074  Sum_probs=44.7

Q ss_pred             EEEEcCccceeEEEEeCccCCCCCCCC---CCeE-EEEecCCC------CccccCHHHHHHHHHHHHHHHHHHcCCCccc
Q 020972           25 LGLDGGTTSTVCICMPVISMSDSLPDP---LPVL-ARAAAGCS------NHNSVGEDAARETIEKVMADALLKSGSNRSA   94 (319)
Q Consensus        25 lGIDiGGTk~~~~l~d~~~~~~~~~~~---G~il-~~~~~~~~------~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~   94 (319)
                      |+||+|.|.+|++++|.         +   |+++ .....+..      +....+++.+++.+.+.++++...    ..+
T Consensus         1 ~aiD~Gtt~~k~~l~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~~----~~~   67 (454)
T TIGR02627         1 VAVDLGASSGRVMLASY---------ENECQKLTLEEIHRFKNGLVSQNGHECWDIDALEQEIRLGLNKVDAE----GIA   67 (454)
T ss_pred             CcEeccCCchheEEEEE---------cCCCceEEEEEEEeCCCCCEeECCEEEEehHHHHHHHHHHHHHHhcc----CCC
Confidence            58999999999999998         5   4665 33332221      112356778888888888877642    235


Q ss_pred             cceEEEeecC
Q 020972           95 VRAVCLAVSG  104 (319)
Q Consensus        95 i~~Igig~pG  104 (319)
                      |.+||+..-|
T Consensus        68 i~~Igis~q~   77 (454)
T TIGR02627        68 PDSIGIDTWG   77 (454)
T ss_pred             ceEEEEeccc
Confidence            7777776544

This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.

>PRK12397 propionate kinase; Reviewed

Probab=93.85  E-value=1  Score=43.45  Aligned_cols=64  Identities=13%  Similarity=-0.017  Sum_probs=51.3

Q ss_pred             hhHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhcccccccEEEEcchhhhcHHHHHHHHhhc
Q 020972          240 LVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEGVTYTKILKEKVPLLMENILFLLSWLVVFLKLIEG  317 (319)
Q Consensus       240 ~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~la~li~~l~~~~~~~~~~~~~~~~~~ivl~Gg~~~~~~~~~~~~~~~~  317 (319)
                      ..+.|.+++.+||+.|+..++-++..+++.|..+...++-             -.-||+.||+-.+++ .+...++++
T Consensus       282 D~R~l~~~~~~gd~~A~lA~d~f~yri~k~IGa~~a~lgg-------------vDaiVFTGGIGEns~-~vR~~ic~~  345 (404)
T PRK12397        282 DYRDVEQAANTGNRQAKLALTLFAERIRATIGSYIMQMGG-------------LDALVFTGGIGENSA-RARSAVCHN  345 (404)
T ss_pred             CHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhCC-------------CCEEEECCchhhCCH-HHHHHHHhh
Confidence            3677878888999999999999999999999999987542             247999999995554 666666653

>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

Probab=93.84  E-value=0.21  Score=51.45  Aligned_cols=49  Identities=16%  Similarity=0.021  Sum_probs=34.6

Q ss_pred             cEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHH
Q 020972           22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMA   82 (319)
Q Consensus        22 ~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~   82 (319)
                      .+.+|||+|||.|.++++|.         ++.++...+..++ +  ..+......+.+.+.
T Consensus         2 ~~~iGID~GGTfTDaV~~~~---------~~g~~~~~K~lTt-P--~~~~~~~~~~~~~~~   50 (674)
T COG0145           2 MLRIGIDVGGTFTDAVLLDE---------DGGVLATIKVLTT-P--DLPSGIVNAGIRLAL   50 (674)
T ss_pred             ceEEEEEcCCCcEeEEEEeC---------CCCEEEEEEccCC-C--CchhhHHHHHHHHHh
Confidence            48999999999999999998         6657777777665 4  244444444444333

>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]

Probab=93.82  E-value=0.28  Score=44.22  Aligned_cols=87  Identities=17%  Similarity=0.192  Sum_probs=52.4

Q ss_pred             CcEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceEEE
Q 020972           21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCL  100 (319)
Q Consensus        21 ~~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Igi  100 (319)
                      ...++|+||||-+|+++..|-         +-..+.....|..    ...+    ++.+.++++..+     .+...+|+
T Consensus         2 ~~kilGiDIGGAntk~a~~DG---------~~~~~d~~YlPMW----k~k~----rL~~~Lkei~~k-----~~~~~vgv   59 (330)
T COG1548           2 KMKILGIDIGGANTKIASSDG---------DNYKIDHIYLPMW----KKKD----RLEETLKEIVHK-----DNVDYVGV   59 (330)
T ss_pred             CceEEEeeccCccchhhhccC---------CeeeeeEEEeccc----cchh----HHHHHHHHHhcc-----CCcceeEE
Confidence            346999999999999998553         3323344444431    1223    345555555433     24556778


Q ss_pred             eecCC-CC----ch-hHHHHHHHHHhhCCCCceEEEe
Q 020972          101 AVSGV-NH----PT-DQQRILNWLRDIFPGNVRLYVH  131 (319)
Q Consensus       101 g~pG~-~~----~~-~~~~l~~~L~~~~~~~~pv~v~  131 (319)
                      -+.|- .|    .. +-..+.+..++.|+  +||++-
T Consensus        60 vMTaELaD~f~tk~eGVe~Ii~~v~~Af~--~pv~~v   94 (330)
T COG1548          60 VMTAELADAFKTKAEGVEDIIDTVEKAFN--CPVYVV   94 (330)
T ss_pred             EeeHHHHHHhhhHHhHHHHHHHHHHHhcC--CceEEE
Confidence            77773 22    11 23467888899997  786553

>PRK00109 Holliday junction resolvase-like protein; Reviewed

Probab=93.80  E-value=0.75  Score=37.74  Aligned_cols=93  Identities=16%  Similarity=0.136  Sum_probs=57.2

Q ss_pred             EEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceEEEee
Q 020972           23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV  102 (319)
Q Consensus        23 ~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Igig~  102 (319)
                      .+||+|.|--+|=+++.|.         .+.+..-...-..+    +....++.|.+    ++++.     ++..|-||+
T Consensus         5 ~iLalD~G~kriGvAv~d~---------~~~~a~pl~~i~~~----~~~~~~~~l~~----~i~~~-----~i~~iVvGl   62 (138)
T PRK00109          5 RILGLDVGTKRIGVAVSDP---------LGGTAQPLETIKRN----NGTPDWDRLEK----LIKEW-----QPDGLVVGL   62 (138)
T ss_pred             cEEEEEeCCCEEEEEEecC---------CCCEEcCEEEEEcC----CCchHHHHHHH----HHHHh-----CCCEEEEec
Confidence            4999999999999999997         55543322111111    11122344444    44433     467888999


Q ss_pred             cCCCCchh------HHHHHHHHHhhCCCCceEEEeCcHHHHHH
Q 020972          103 SGVNHPTD------QQRILNWLRDIFPGNVRLYVHNDALAALA  139 (319)
Q Consensus       103 pG~~~~~~------~~~l~~~L~~~~~~~~pv~v~NDa~aa~~  139 (319)
                      |=-.+...      -..+.+.|++.++  +||..-+.-.....
T Consensus        63 P~~~~G~~~~~~~~v~~f~~~L~~~~~--~~v~~~DEr~TT~~  103 (138)
T PRK00109         63 PLNMDGTEGPRTERARKFANRLEGRFG--LPVVLVDERLSTVE  103 (138)
T ss_pred             cCCCCCCcCHHHHHHHHHHHHHHHHhC--CCEEEEcCCcCHHH
Confidence            86433221      2468888888886  89888877765433

>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein

Probab=93.53  E-value=0.42  Score=44.83  Aligned_cols=125  Identities=16%  Similarity=0.120  Sum_probs=74.8

Q ss_pred             EEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceEEEeecC
Q 020972           25 LGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVSG  104 (319)
Q Consensus        25 lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Igig~pG  104 (319)
                      ||+||||-++|++++|.         +|++....+.+. +.+ .+.+.    +.+++.+++++.+.    ...++|-+.|
T Consensus         1 ~G~DiGGA~~K~a~~~~---------~g~~~~v~~~~~-plW-~~~~~----L~~~l~~~~~~~~~----~~~~avtMTg   61 (318)
T TIGR03123         1 LGIDIGGANTKAAELDE---------DGRIKEVHQLYC-PLW-KGNDK----LAETLKEISQDLSS----ADNVAVTMTG   61 (318)
T ss_pred             CccccccceeeeEEecC---------CCceeEEEEecC-ccc-CCchH----HHHHHHHHHHhcCc----cceEEEEeeh
Confidence            68999999999999998         788776555433 222 45544    44455555544321    2467788888


Q ss_pred             C-----CCchhH-HHHHHHHHhhCCCCceE-EEeCcHHHH-------------H---Hh-h---cCCCCCeEEEEECccc
Q 020972          105 V-----NHPTDQ-QRILNWLRDIFPGNVRL-YVHNDALAA-------------L---AS-G---TMGKLHGCVLIAGTGT  157 (319)
Q Consensus       105 ~-----~~~~~~-~~l~~~L~~~~~~~~pv-~v~NDa~aa-------------~---~g-~---~~g~~~~v~v~~GTGi  157 (319)
                      =     .++.++ ..|.+.+++.|+  .|+ ++.+|....             .   .+ +   ....+|.+++=+|.=+
T Consensus        62 ELaD~f~~r~~GV~~i~~~~~~~~~--~~~~i~~s~GG~~s~~~a~~~pv~~~~Sg~~a~A~~la~~~~~~I~~DmGGTT  139 (318)
T TIGR03123        62 ELADCFEDKAEGVEFILAAVESAFG--SPVSVFASDGGFVSAEEALTNPLDVAAANWLATAQLIAKRIPECLFVDMGSTT  139 (318)
T ss_pred             hhhhhhcCHHHHHHHHHHHHHHhcC--CCeEEEecCCCCccHHHHHHhHHHHHHhhHHHHHHHHHhcCCCEEEEEcCccc
Confidence            3     223333 467888999997  454 445555210             0   00 0   1235788888877322


Q ss_pred             eeEeEecCCcEEe
Q 020972          158 IAYGFTEDGRDAR  170 (319)
Q Consensus       158 gg~gii~dG~~~r  170 (319)
                      -=...+.||+...
T Consensus       140 tDi~~i~~G~p~~  152 (318)
T TIGR03123       140 TDIIPIIDGEVAA  152 (318)
T ss_pred             eeeEEecCCEeee
Confidence            2335678898754

This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.

>TIGR01174 ftsA cell division protein FtsA

Probab=93.04  E-value=0.63  Score=44.50  Aligned_cols=72  Identities=25%  Similarity=0.364  Sum_probs=46.6

Q ss_pred             EEEEEcCccceeEEEEeCccCCCCCCCCC--CeEEEEecCCCCc---cccCHHHHHHHHHHHHHHHHHHcCCCccccceE
Q 020972           24 ILGLDGGTTSTVCICMPVISMSDSLPDPL--PVLARAAAGCSNH---NSVGEDAARETIEKVMADALLKSGSNRSAVRAV   98 (319)
Q Consensus        24 ~lGIDiGGTk~~~~l~d~~~~~~~~~~~G--~il~~~~~~~~~~---~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~I   98 (319)
                      ++|+|+|.|++++++....       .++  +++.....+....   .=.+.+.+.+.|.++++++.+.++.   ++..+
T Consensus         2 ~~~lDIGs~~ik~vv~~~~-------~~~~~~i~~~~~~~~~gi~~G~I~d~~~~~~~i~~al~~~e~~~~~---~i~~v   71 (371)
T TIGR01174         2 IVGLDIGTSKICAIVAEVL-------EDGELNIIGVGTHPSRGIKKGVINDIEAAVGSIQRAIEAAELMAGC---EIRSV   71 (371)
T ss_pred             EEEEEeccceEEEEEEEEc-------CCCCEEEEEEEEecCCCccCcEEEcHHHHHHHHHHHHHHHHHHhCC---cccEE
Confidence            6899999999999987641       034  4455545442211   0135677777788877777666665   45567


Q ss_pred             EEeecCC
Q 020972           99 CLAVSGV  105 (319)
Q Consensus        99 gig~pG~  105 (319)
                      .+++||.
T Consensus        72 ~~~v~g~   78 (371)
T TIGR01174        72 IVSISGA   78 (371)
T ss_pred             EEEEccc
Confidence            7888874

This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.

>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination

Probab=91.39  E-value=0.96  Score=36.96  Aligned_cols=90  Identities=16%  Similarity=0.209  Sum_probs=55.1

Q ss_pred             EEEEEEcCccceeEEEEeCccCCCCCCCCCCeE-EEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceEEEe
Q 020972           23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVL-ARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLA  101 (319)
Q Consensus        23 ~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il-~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Igig  101 (319)
                      .+||+|.|..+|=+++.|.         .+.+- ........     +....++.|.++++    +.     ++..|-||
T Consensus         2 riL~lD~G~kriGiAvsd~---------~~~~a~pl~~i~~~-----~~~~~~~~l~~li~----~~-----~i~~iVvG   58 (135)
T PF03652_consen    2 RILGLDYGTKRIGIAVSDP---------LGIIASPLETIPRR-----NREKDIEELKKLIE----EY-----QIDGIVVG   58 (135)
T ss_dssp             EEEEEEECSSEEEEEEEET---------TTSSEEEEEEEEEC-----CCCCCHHHHHHHHH----HC-----CECEEEEE
T ss_pred             eEEEEEeCCCeEEEEEecC---------CCCeEeeeEEEECC-----CCchHHHHHHHHHH----Hh-----CCCEEEEe
Confidence            5899999999999999997         55432 11222111     11233344444443    32     57788899


Q ss_pred             ecCCC----Cch--hHHHHHHHHHhhCCCCceEEEeCcHHH
Q 020972          102 VSGVN----HPT--DQQRILNWLRDIFPGNVRLYVHNDALA  136 (319)
Q Consensus       102 ~pG~~----~~~--~~~~l~~~L~~~~~~~~pv~v~NDa~a  136 (319)
                      +|=-.    .+.  .-..+.+.|++.+++ +||..-+.-..
T Consensus        59 lP~~~~G~~~~~~~~v~~f~~~L~~~~~~-ipV~~~DEr~T   98 (135)
T PF03652_consen   59 LPLNMDGSESEQARRVRKFAEELKKRFPG-IPVILVDERLT   98 (135)
T ss_dssp             EEBBCTSSC-CCHHHHHHHHHHHHHHH-T-SEEEEEECSCS
T ss_pred             CCcccCCCccHHHHHHHHHHHHHHHhcCC-CcEEEECCChh
Confidence            98432    221  235788899999832 89888776543

The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.

>TIGR03706 exo_poly_only exopolyphosphatase

Probab=91.30  E-value=6.2  Score=36.58  Aligned_cols=136  Identities=17%  Similarity=0.107  Sum_probs=80.6

Q ss_pred             EEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecC---CCCccccC--HHHHHHHHHHHHHHHHHHcC-CCccccce
Q 020972           24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAG---CSNHNSVG--EDAARETIEKVMADALLKSG-SNRSAVRA   97 (319)
Q Consensus        24 ~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~---~~~~~~~~--~~~~~~~i~~~i~~~l~~~~-~~~~~i~~   97 (319)
                      +-.||+|...+|..+++....      .-+++.+.+.+   .......+  .++.++++.++++++.+... ...+++  
T Consensus         2 ~AvIDiGSNsirl~I~~~~~~------~~~~l~~~~~~vrL~~~~~~~g~i~~e~i~~~~~~l~~f~~~~~~~~v~~i--   73 (300)
T TIGR03706         2 IAAIDIGSNSVRLVIARGVEG------SLQVLFNEKEMVRLGEGLDSTGRLSEEAIERALEALKRFAELLRGFPVDEV--   73 (300)
T ss_pred             eEEEEecCCeeeEEEEEecCC------cEEEhhheeeeeecCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHhCCCCeE--
Confidence            468999999999999986200      11233332221   10110111  14556666666666554432 111233  


Q ss_pred             EEEeecCCCCchhHHHHHHHHHhhCCCCceEEEeCcHHHHHH---hh--cCCCCCeEEEEECccceeEeEecCCcEE
Q 020972           98 VCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALA---SG--TMGKLHGCVLIAGTGTIAYGFTEDGRDA  169 (319)
Q Consensus        98 Igig~pG~~~~~~~~~l~~~L~~~~~~~~pv~v~NDa~aa~~---g~--~~g~~~~v~v~~GTGigg~gii~dG~~~  169 (319)
                      ..++.+..-+..+...+.+.+++.++  .++.|-+...=|.+   +.  .....+.+++=+|.|+.-..+..++++.
T Consensus        74 ~~vaTsa~R~A~N~~~~~~~i~~~tg--i~i~visg~eEa~l~~~gv~~~~~~~~~~v~DiGGGSte~~~~~~~~~~  148 (300)
T TIGR03706        74 RAVATAALRDAKNGPEFLREAEAILG--LPIEVISGEEEARLIYLGVAHTLPIADGLVVDIGGGSTELILGKDFEPG  148 (300)
T ss_pred             EEEEcHHHHcCCCHHHHHHHHHHHHC--CCeEEeChHHHHHHHHHHHHhCCCCCCcEEEEecCCeEEEEEecCCCEe
Confidence            35677777666667788899998887  78888877764433   22  1233456889999999777665566653

It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.

>PRK10854 exopolyphosphatase; Provisional

Probab=91.23  E-value=6.8  Score=39.34  Aligned_cols=136  Identities=13%  Similarity=0.079  Sum_probs=84.4

Q ss_pred             CCCcEEEEEEcCccceeEEEEeCccCCCCCCCCC--CeEEEEecC---CCCccccCH--HHHHHHHHHHHHHHHHH---c
Q 020972           19 GGREVILGLDGGTTSTVCICMPVISMSDSLPDPL--PVLARAAAG---CSNHNSVGE--DAARETIEKVMADALLK---S   88 (319)
Q Consensus        19 ~m~~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G--~il~~~~~~---~~~~~~~~~--~~~~~~i~~~i~~~l~~---~   88 (319)
                      |-+..+-.||+|..+++..+++..        ++  +++.+.+..   .......+.  ++.+++..++++++.+.   .
T Consensus         8 ~~~~~~A~IDIGSNSirL~I~e~~--------~~~~~~i~~~k~~vrLg~g~~~~g~Ls~e~~~r~~~~L~~F~~~~~~~   79 (513)
T PRK10854          8 PRPQEFAAVDLGSNSFHMVIARVV--------DGAMQIIGRLKQRVHLADGLDSDNMLSEEAMERGLNCLSLFAERLQGF   79 (513)
T ss_pred             CCCCEEEEEEeccchheEEEEEec--------CCcEEEeeeeeEEEECCCCcCCCCCcCHHHHHHHHHHHHHHHHHHHhC
Confidence            434579999999999999999862        23  333322221   111111121  45566666666655443   3


Q ss_pred             CCCccccceEEEeecCCCCchhHHHHHHHHHhhCCCCceEEEeCcHHHHHH---hhc--C-CCCCeEEEEECccceeEeE
Q 020972           89 GSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALA---SGT--M-GKLHGCVLIAGTGTIAYGF  162 (319)
Q Consensus        89 ~~~~~~i~~Igig~pG~~~~~~~~~l~~~L~~~~~~~~pv~v~NDa~aa~~---g~~--~-g~~~~v~v~~GTGigg~gi  162 (319)
                      ++  +++  ..++.+-+-+..+...+.+.+++.++  .+|.|-+...=|.+   |..  . ..++.+++=+|.|+--.-+
T Consensus        80 ~v--~~v--~~vATsAlReA~N~~~fl~~i~~~tG--l~i~vIsG~EEA~l~~~gv~~~l~~~~~~lvvDIGGGStEl~~  153 (513)
T PRK10854         80 SP--ANV--CIVGTHTLRQALNATDFLKRAEKVIP--YPIEIISGNEEARLIFMGVEHTQPEKGRKLVIDIGGGSTELVI  153 (513)
T ss_pred             CC--CeE--EEEehHHHHcCcCHHHHHHHHHHHHC--CCeEEeCHHHHHHHHHhhhhcccCCCCCeEEEEeCCCeEEEEE
Confidence            32  234  34677777666677889999999997  89999988774433   321  1 2246889999999866655


Q ss_pred             ecCCcE
Q 020972          163 TEDGRD  168 (319)
Q Consensus       163 i~dG~~  168 (319)
                      ..++++
T Consensus       154 ~~~~~~  159 (513)
T PRK10854        154 GENFEP  159 (513)
T ss_pred             ecCCCe
Confidence            556643

>PF03630 Fumble: Fumble ; InterPro: IPR004567 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway

Probab=91.08  E-value=7.5  Score=36.89  Aligned_cols=43  Identities=5%  Similarity=0.061  Sum_probs=29.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhcccccccEEEEcchhhhcHHHH
Q 020972          253 EVANKILQDSVEELALSVKAVVQRLSLSGEGVTYTKILKEKVPLLMENILFLLSWLVV  310 (319)
Q Consensus       253 ~~A~~il~~a~~~Lg~~la~li~~l~~~~~~~~~~~~~~~~~~ivl~Gg~~~~~~~~~  310 (319)
                      ..|+.++.-.+..++..........+.              ..||++|..+ +..+..
T Consensus       262 Dia~sll~mv~~nIg~la~l~A~~~~~--------------~~I~f~G~~~-~~~~~~  304 (341)
T PF03630_consen  262 DIAKSLLNMVSNNIGQLAYLHAKIHGV--------------KRIVFGGSFI-RNNPIT  304 (341)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHT----------------EEEEESGGG-TSSCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCC--------------CEEEEEeccc-cCCHHH
Confidence            457777877777777777766666676              4799999988 444333

CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This family describes the type II (primarily eukaryotic) form of pantothenate kinase PanK, characterised from the fungus Emericella nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from type I PanK enzymes and shows little sequence similarity [, ].; GO: 0004594 pantothenate kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 3SMP_B 2I7N_B 2EWS_B 2I7P_C 3SMS_A 3MK6_D.

>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional

Probab=91.06  E-value=14  Score=35.05  Aligned_cols=107  Identities=15%  Similarity=0.161  Sum_probs=74.3

Q ss_pred             EEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCc-----c-ccCHHHHHHHHHHHHHHHHHHcCCCccccc
Q 020972           23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNH-----N-SVGEDAARETIEKVMADALLKSGSNRSAVR   96 (319)
Q Consensus        23 ~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~-----~-~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~   96 (319)
                      .+||||--...+.++++|.         +++++...+......     . +.-...-.++|..++++++++++....+|.
T Consensus         2 ~iLgIETScd~tsvAl~~~---------~~~il~~~~~sq~~~~G~GvvP~~a~r~H~~~l~~~i~~~l~~a~~~~~did   72 (345)
T PTZ00340          2 LALGIEGSANKLGVGIVTS---------DGEILSNVRETYITPPGTGFLPRETAQHHREHILSLVKEALEEAKITPSDIS   72 (345)
T ss_pred             eEEEEEccchhhEEEEEEC---------CCcEEEEEEeeccccCCCCcCchHHHHHHHHHHHHHHHHHHHHcCCCHHHCC
Confidence            5899999998999999997         777877543211000     0 011233467889999999999999888999


Q ss_pred             eEEEee-cCCCC-chhHHHHHHHHHhhCCCCceEEEeCcHHHHHHh
Q 020972           97 AVCLAV-SGVNH-PTDQQRILNWLRDIFPGNVRLYVHNDALAALAS  140 (319)
Q Consensus        97 ~Igig~-pG~~~-~~~~~~l~~~L~~~~~~~~pv~v~NDa~aa~~g  140 (319)
                      +|+++. ||... -.-+....+-|...++  +|++=.|-..+-+++
T Consensus        73 ~Iavt~GPGl~~~LrVG~~~Ak~LA~a~~--~PligV~HlegHi~a  116 (345)
T PTZ00340         73 LICYTKGPGMGAPLSVGAVVARTLSLLWG--KPLVGVNHCVAHIEM  116 (345)
T ss_pred             EEEEecCCCcHhhHHHHHHHHHHHHHHcC--CCEeecchHHHHHHH
Confidence            988763 44321 1224566777877787  899998888765554

>PRK07058 acetate kinase; Provisional

Probab=90.92  E-value=4.5  Score=39.06  Aligned_cols=137  Identities=12%  Similarity=0.035  Sum_probs=77.9

Q ss_pred             CCeEEEEECccceeEeEecCCcEEe-eCCCCCccC-CcCChHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHcCCCChhh
Q 020972          146 LHGCVLIAGTGTIAYGFTEDGRDAR-AAGAGPILG-DWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDE  223 (319)
Q Consensus       146 ~~~v~v~~GTGigg~gii~dG~~~r-aGg~Ghl~g-d~Gsa~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~~~~~  223 (319)
                      .+.|+.-+|.|+.-+ -+.||+.+- .-|+.-+-| .-|               ...|..++..+.. +.+..+ .+.++
T Consensus       201 ~~~Iv~HLG~G~Si~-Ai~~GksvDtsmG~tpLeGL~mg---------------tRsG~ldp~~l~~-l~~~~~-~s~~e  262 (396)
T PRK07058        201 GKVVAAHLGSGASLC-ALDAGKSRDTSMGFSTLDGIPMA---------------TRCGALDPGVVLH-LLKQEG-MSLDE  262 (396)
T ss_pred             CCEEEEEeCCCceee-eeeCCEEEEcCCCCCCcCCCccc---------------CCCCCCChHHHHH-HHHhcC-CCHHH
Confidence            378999999998655 558999764 222211111 000               0112222222221 222222 14445


Q ss_pred             HHHHhccCCCh---HHHhchhHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhcccccccEEEEc
Q 020972          224 LIGWTYVDPSW---ARIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEGVTYTKILKEKVPLLMEN  300 (319)
Q Consensus       224 l~~~~~~~~~~---~~~a~~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~la~li~~l~~~~~~~~~~~~~~~~~~ivl~G  300 (319)
                      +...++.+...   ..+....+.| +  +++|+.|+..++-++..+++.|..+...++-             -..||+.|
T Consensus       263 l~~~Ln~~SGLlg~sG~s~D~R~l-~--~~~d~~A~lA~d~f~yri~k~IGa~~a~Lg~-------------vDaiVfTG  326 (396)
T PRK07058        263 VEDLLYHRSGLLGVSGISGDTRDL-L--ASDAPEAREALDLFALRIAGEIARLAATLGG-------------LDAVVFTA  326 (396)
T ss_pred             HHHHHhcccCcEEecCCCCCHHHH-h--hcCCHhHHHHHHHHHHHHHHHHHHHHHHhCC-------------CCEEEECC
Confidence            55554432110   1111124555 2  3469999999999999999999999988853             24799999


Q ss_pred             chhhhcHHHHHHHHhhc
Q 020972          301 ILFLLSWLVVFLKLIEG  317 (319)
Q Consensus       301 g~~~~~~~~~~~~~~~~  317 (319)
                      |+- .....+...++++
T Consensus       327 GIg-Ens~~vr~~i~~~  342 (396)
T PRK07058        327 GIG-EHQPAIRAAVCER  342 (396)
T ss_pred             ccc-cCcHHHHHHHHhh
Confidence            998 4555666666653

>TIGR03725 bact_YeaZ universal bacterial protein YeaZ

Probab=90.75  E-value=7.9  Score=33.67  Aligned_cols=96  Identities=17%  Similarity=0.133  Sum_probs=66.5

Q ss_pred             EEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceEEEeec
Q 020972           24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVS  103 (319)
Q Consensus        24 ~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Igig~p  103 (319)
                      +|+||--+..+.+++.+          +++++.+....       ....-.+.|...+++++++++....++..|.++ -
T Consensus         1 iLaidTs~~~~sval~~----------~~~~~~~~~~~-------~~~~h~~~l~~~i~~~l~~~~~~~~~i~~iav~-~   62 (202)
T TIGR03725         1 ILAIDTSTEALSVALLD----------DGEILAERSEE-------AGRNHSEILLPMIEELLAEAGLSLQDLDAIAVG-V   62 (202)
T ss_pred             CEEEECCCcceEEEEEE----------CCEEEEEEeeh-------hhHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEe-c
Confidence            47899888888899887          46777665432       123334667888899999999988899888775 4


Q ss_pred             CCCCchh---HHHHHHHHHhhCCCCceEEEeCcHHHHHH
Q 020972          104 GVNHPTD---QQRILNWLRDIFPGNVRLYVHNDALAALA  139 (319)
Q Consensus       104 G~~~~~~---~~~l~~~L~~~~~~~~pv~v~NDa~aa~~  139 (319)
                      ||.+-.+   .....+-|...++  +|++-.+--.+.+.
T Consensus        63 GPGSfTGlRig~~~akgla~~~~--~p~~~vssL~~lA~   99 (202)
T TIGR03725        63 GPGSFTGLRIGLATAKGLALALG--IPLVGVSSLEALAA   99 (202)
T ss_pred             CCChHHhHHHHHHHHHHHHHHhC--CCEEecCHHHHHHh
Confidence            6655433   3445666666666  89887777665443

This family describes a protein family, YeaZ, that appears to be universal in bacteria, but whose function is unknown. This family is related to the gcp (glycoprotease) protein family, also universal in bacteria and unknown in function. In Gram-positive lineages, members of these two related families often belong to the same operon, along with the ribosomal-protein-alanine acetyltransferase gene. Members of this family may occur as fusions with gcp or the ribosomal protein N-acetyltransferase rimI, and is frequently encoded next to rimI.

>smart00268 ACTIN Actin

Probab=90.75  E-value=4.3  Score=38.64  Aligned_cols=93  Identities=20%  Similarity=0.281  Sum_probs=61.6

Q ss_pred             HHHHHHHHHHHHHH-cCCCccccceEEEeecCCCCchhHHHHHHHHHhhCCCCceEEEeCcHHHHHHhhcCCCCCeEEEE
Q 020972           74 RETIEKVMADALLK-SGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTMGKLHGCVLI  152 (319)
Q Consensus        74 ~~~i~~~i~~~l~~-~~~~~~~i~~Igig~pG~~~~~~~~~l~~~L~~~~~~~~pv~v~NDa~aa~~g~~~g~~~~v~v~  152 (319)
                      ++.+...++.++.+ .+..+.+ ..+-+..|-.........+.+.|-+.++. ..+.+.++..+++++.  |..++++|-
T Consensus        74 ~~~~e~i~~~~~~~~l~~~~~~-~~vll~~p~~~~~~~r~~~~e~lfE~~~~-~~v~~~~~~~~a~~~~--g~~~~lVVD  149 (373)
T smart00268       74 WDDMEKIWDYTFFNELRVEPEE-HPVLLTEPPMNPKSNREKILEIMFETFNF-PALYIAIQAVLSLYAS--GRTTGLVID  149 (373)
T ss_pred             HHHHHHHHHHHHhhhcCCCCcc-CeeEEecCCCCCHHHHHHHHHHhhccCCC-CeEEEeccHHHHHHhC--CCCEEEEEe
Confidence            34445555555552 3333322 34556777766555566777777666762 3488999999988863  467899999


Q ss_pred             ECccceeEeEecCCcEEe
Q 020972          153 AGTGTIAYGFTEDGRDAR  170 (319)
Q Consensus       153 ~GTGigg~gii~dG~~~r  170 (319)
                      +|.+..-...+.||.+..
T Consensus       150 iG~~~t~v~pv~~G~~~~  167 (373)
T smart00268      150 SGDGVTHVVPVVDGYVLP  167 (373)
T ss_pred             cCCCcceEEEEECCEEch
Confidence            999886666678898753

ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily

>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A

Probab=90.69  E-value=2.9  Score=34.85  Aligned_cols=98  Identities=14%  Similarity=0.199  Sum_probs=44.7

Q ss_pred             EEEEEEcCcc----ceeEEEEeCccCCCCCCCCCCeEEEEec-CCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccce
Q 020972           23 VILGLDGGTT----STVCICMPVISMSDSLPDPLPVLARAAA-GCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRA   97 (319)
Q Consensus        23 ~~lGIDiGGT----k~~~~l~d~~~~~~~~~~~G~il~~~~~-~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~   97 (319)
                      .++++--|..    .+.++++|.         +|+++...+. .+.... ...+...+.+.+    ++.+.     +..-
T Consensus         6 rVla~~~g~g~~~~~~~~v~ld~---------~G~v~d~~~~~~~~~~~-~~~~~~~~~l~~----~i~~~-----kP~v   66 (150)
T PF14639_consen    6 RVLALSWGSGDGDDAVFCVVLDE---------NGEVLDHLKLVYNERDR-ERKEEDMERLKK----FIEKH-----KPDV   66 (150)
T ss_dssp             -EEEEE-TT--TTS-EEEEEE-T---------TS-EEEEEEE-S-TT-S-S-SHHHHHHHHH----HHHHH-------SE
T ss_pred             EEEEEEcCCCCCCCCEEEEEECC---------CCcEEEEEEEcCCccch-HHHHHHHHHHHH----HHHHc-----CCeE
Confidence            4777777733    488999999         9999998876 221111 223344444444    44443     2334


Q ss_pred             EEEeecCCCCchhHHHHHHHHHhhC-----CCCceEEEeCcHHHHHHh
Q 020972           98 VCLAVSGVNHPTDQQRILNWLRDIF-----PGNVRLYVHNDALAALAS  140 (319)
Q Consensus        98 Igig~pG~~~~~~~~~l~~~L~~~~-----~~~~pv~v~NDa~aa~~g  140 (319)
                      |+||-.+....+-...+++.+++.-     + .+||.+.||.-+-++.
T Consensus        67 I~v~g~~~~s~~l~~~v~~~v~~~~~~~~~~-~i~V~~v~~~~A~lY~  113 (150)
T PF14639_consen   67 IAVGGNSRESRKLYDDVRDIVEELDEDEQMP-PIPVVIVDDEVARLYS  113 (150)
T ss_dssp             EEE--SSTHHHHHHHHHHHHHHHTTB-TTS--B--EEE---TTHHHHH
T ss_pred             EEEcCCChhHHHHHHHHHHHHHHhhhcccCC-CceEEEECcHHHHHHh
Confidence            4453222221122345666665543     2 2788888888776664

>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B

Probab=90.21  E-value=2.3  Score=35.06  Aligned_cols=90  Identities=17%  Similarity=0.149  Sum_probs=54.7

Q ss_pred             cEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHH-HHHHHHHHHHHHHHHHcCCCccccceEEE
Q 020972           22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGED-AARETIEKVMADALLKSGSNRSAVRAVCL  100 (319)
Q Consensus        22 ~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~-~~~~~i~~~i~~~l~~~~~~~~~i~~Igi  100 (319)
                      ..+||+|.|.-+|=+++-|.         .+ .+.+..   .+....+.. ..+++|.+.+++.         ++..|-|
T Consensus         2 ~~ilalD~G~KrIGvA~sd~---------~~-~~A~pl---~~i~~~~~~~~~~~~l~~li~~~---------~~~~vVV   59 (141)
T COG0816           2 MRILALDVGTKRIGVAVSDI---------LG-SLASPL---ETIKRKNGKPQDFNALLKLVKEY---------QVDTVVV   59 (141)
T ss_pred             ceEEEEecCCceEEEEEecC---------CC-ccccch---hhheeccccHhhHHHHHHHHHHh---------CCCEEEE
Confidence            36999999999999999887         33 222211   111111111 2344555544432         5677889


Q ss_pred             eecCCCCch------hHHHHHHHHHhhCCCCceEEEeCcHH
Q 020972          101 AVSGVNHPT------DQQRILNWLRDIFPGNVRLYVHNDAL  135 (319)
Q Consensus       101 g~pG~~~~~------~~~~l~~~L~~~~~~~~pv~v~NDa~  135 (319)
                      |+|=--+.+      ....+.+.|+++|+  +||.+-..-.
T Consensus        60 GlP~~m~g~~~~~~~~~~~f~~~L~~r~~--lpv~l~DERl   98 (141)
T COG0816          60 GLPLNMDGTEGPRAELARKFAERLKKRFN--LPVVLWDERL   98 (141)
T ss_pred             ecCcCCCCCcchhHHHHHHHHHHHHHhcC--CCEEEEcCcc
Confidence            988743211      13568899999997  8988776554

subtilis) [DNA replication, recombination, and repair]

>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]

Probab=89.95  E-value=2.5  Score=41.23  Aligned_cols=73  Identities=23%  Similarity=0.299  Sum_probs=50.9

Q ss_pred             EEEEEEcCccceeEEEEeCccCCCCCCCCC--CeEEEEecCCCCc---cccCHHHHHHHHHHHHHHHHHHcCCCccccce
Q 020972           23 VILGLDGGTTSTVCICMPVISMSDSLPDPL--PVLARAAAGCSNH---NSVGEDAARETIEKVMADALLKSGSNRSAVRA   97 (319)
Q Consensus        23 ~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G--~il~~~~~~~~~~---~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~   97 (319)
                      +++|+|+|.+|+++.+.....       +|  +++.....++...   .=.+.+.+.+.|.++++++...++.   ++..
T Consensus         7 ~iv~LDIGTskV~~lVge~~~-------~g~i~iig~g~~~SrGik~G~I~di~~~~~sI~~av~~AE~mag~---~i~~   76 (418)
T COG0849           7 LIVGLDIGTSKVKALVGELRP-------DGRLNIIGVGSHPSRGIKKGVIVDLDAAAQSIKKAVEAAERMAGC---EIKS   76 (418)
T ss_pred             eEEEEEccCcEEEEEEEEEcC-------CCeEEEEeeecccCcccccceEEcHHHHHHHHHHHHHHHHHhcCC---Ccce
Confidence            899999999999988876521       33  2333333322111   0136788889999999999888876   5668


Q ss_pred             EEEeecCC
Q 020972           98 VCLAVSGV  105 (319)
Q Consensus        98 Igig~pG~  105 (319)
                      +.++++|-
T Consensus        77 v~vs~sG~   84 (418)
T COG0849          77 VIVSLSGN   84 (418)
T ss_pred             EEEEeccc
Confidence            88999993

>COG0282 ackA Acetate kinase [Energy production and conversion]

Probab=89.65  E-value=1.6  Score=41.61  Aligned_cols=140  Identities=15%  Similarity=0.079  Sum_probs=84.2

Q ss_pred             CCeEEEEECccceeEeEecCCcEEeeCCCCCccCCcCChHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHcCCCChhhHH
Q 020972          146 LHGCVLIAGTGTIAYGFTEDGRDARAAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELI  225 (319)
Q Consensus       146 ~~~v~v~~GTGigg~gii~dG~~~raGg~Ghl~gd~Gsa~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~~~~~l~  225 (319)
                      -+.+..-+|.|..-++ +.||+.+-. ..|+..- +|-  -.|         ...|- -+.++...+.+..+. +.+++.
T Consensus       200 l~~I~~HLGNGASicA-iknGkSvDT-SMGfTPL-eGl--~MG---------TRsGd-iDP~ii~~l~~~~~~-s~~~i~  263 (396)
T COG0282         200 LNLITCHLGNGASICA-IKNGKSVDT-SMGFTPL-EGL--MMG---------TRSGD-IDPGIILYLMEQEGM-SAEEID  263 (396)
T ss_pred             cCEEEEEecCchhhhh-hhCCeeecc-CCCCCcc-cce--ecc---------CCCCC-CChHHHHHHHHhcCC-CHHHHH
Confidence            3678889999875554 589987641 1222110 000  000         00111 123344445555553 555555


Q ss_pred             HHhccCCC---hHHHhchhHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhcccccccEEEEcch
Q 020972          226 GWTYVDPS---WARIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEGVTYTKILKEKVPLLMENIL  302 (319)
Q Consensus       226 ~~~~~~~~---~~~~a~~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~la~li~~l~~~~~~~~~~~~~~~~~~ivl~Gg~  302 (319)
                      ..++++..   -..+.+..+.+.+++.+|++ |+-.++-+...|++.+......++-.             ..+|+-||+
T Consensus       264 ~~LNkkSGllGlSg~ssD~R~l~~~~~~g~~-A~lA~~~f~~Ri~kyIg~y~a~L~gl-------------DaiVFTaGI  329 (396)
T COG0282         264 TLLNKKSGLLGLSGLSSDMRDLEEAAAEGNE-AKLALDMFVYRIAKYIGSYAAALGGL-------------DALVFTAGI  329 (396)
T ss_pred             HHHhhhccccccccccchHHHHHHHhccCch-HHHHHHHHHHHHHHHHHHHHHHhCCC-------------CEEEEeCcc
Confidence            55543221   11222346888899999977 99999999999999999999888742             379999999


Q ss_pred             hhhcHHHHHHHHhh
Q 020972          303 FLLSWLVVFLKLIE  316 (319)
Q Consensus       303 ~~~~~~~~~~~~~~  316 (319)
                      - .+...+...+++
T Consensus       330 G-ENs~~iR~~v~~  342 (396)
T COG0282         330 G-ENSALVRELVCE  342 (396)
T ss_pred             c-cCcHHHHHHHHh
Confidence            8 555566666655

>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF

Probab=89.31  E-value=3  Score=33.82  Aligned_cols=91  Identities=19%  Similarity=0.150  Sum_probs=54.4

Q ss_pred             EEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceEEEeecC
Q 020972           25 LGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVSG  104 (319)
Q Consensus        25 lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Igig~pG  104 (319)
                      ||||.|..+|=+++.|.         .+.+..-...-..    .+....++.|.+    ++++.     ++..|-||+|=
T Consensus         1 laiD~G~kriGvA~~d~---------~~~~a~pl~~i~~----~~~~~~~~~l~~----~i~~~-----~~~~iVvGlP~   58 (130)
T TIGR00250         1 LGLDFGTKSIGVAGQDI---------TGWTAQGIPTIKA----QDGEPDWSRIEE----LLKEW-----TPDKIVVGLPL   58 (130)
T ss_pred             CeEccCCCeEEEEEECC---------CCCEEeceEEEEe----cCCcHHHHHHHH----HHHHc-----CCCEEEEeccC
Confidence            68999999999999887         5543311110000    112233344444    44443     46678899886


Q ss_pred             CCCchh------HHHHHHHHHhhCCCCceEEEeCcHHHHHH
Q 020972          105 VNHPTD------QQRILNWLRDIFPGNVRLYVHNDALAALA  139 (319)
Q Consensus       105 ~~~~~~------~~~l~~~L~~~~~~~~pv~v~NDa~aa~~  139 (319)
                      -.+-..      -..+.+.|++.++  .||.+-+.-.....
T Consensus        59 ~~dG~~~~~a~~v~~f~~~L~~~~~--~~v~~~DEr~TT~~   97 (130)
T TIGR00250        59 NMDGTEGPLTERAQKFANRLEGRFG--VPVVLWDERLSTVE   97 (130)
T ss_pred             CCCcCcCHHHHHHHHHHHHHHHHhC--CCEEEEcCCcCHHH
Confidence            533222      2478888888886  89888877665433

This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.

>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton

Probab=88.83  E-value=8.7  Score=36.51  Aligned_cols=91  Identities=21%  Similarity=0.266  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHHHc-CCCccccceEEEeecCCCCchhHHHHHHHHHhhCCCCceEEEeCcHHHHHHhhcCCCCCeEEEEEC
Q 020972           76 TIEKVMADALLKS-GSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTMGKLHGCVLIAG  154 (319)
Q Consensus        76 ~i~~~i~~~l~~~-~~~~~~i~~Igig~pG~~~~~~~~~l~~~L~~~~~~~~pv~v~NDa~aa~~g~~~g~~~~v~v~~G  154 (319)
                      .+...++.++.+. ..++. -..+-+..|..........+.+.|-+.++. ..+.+.++.-+++++.  |..++++|-+|
T Consensus        76 ~~e~~~~~~~~~~l~~~~~-~~~vvl~~p~~~~~~~r~~~~e~lfe~~~~-~~v~~~~~~~~a~~~~--g~~~~lVVDiG  151 (371)
T cd00012          76 DMEKIWDHLFFNELKVNPE-EHPVLLTEPPLNPKSNREKTTEIMFETFNV-PALYVAIQAVLSLYAS--GRTTGLVVDSG  151 (371)
T ss_pred             HHHHHHHHHHHHhcCCCCC-CCceEEecCCCCCHHHHHHHHHHhhccCCC-CEEEEechHHHHHHhc--CCCeEEEEECC
Confidence            3444444554432 22322 235667788877655566777777677762 3599999999988863  45789999999


Q ss_pred             ccceeEeEecCCcEEe
Q 020972          155 TGTIAYGFTEDGRDAR  170 (319)
Q Consensus       155 TGigg~gii~dG~~~r  170 (319)
                      .+..-...+.||.+..
T Consensus       152 ~~~t~i~pv~~G~~~~  167 (371)
T cd00012         152 DGVTHVVPVYDGYVLP  167 (371)
T ss_pred             CCeeEEEEEECCEEch
Confidence            9875556678887754

Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.

>PTZ00186 heat shock 70 kDa precursor protein; Provisional

Probab=88.78  E-value=32  Score=35.72  Aligned_cols=67  Identities=16%  Similarity=-0.008  Sum_probs=40.8

Q ss_pred             ccceEEEeecCCCCchhHHHHHHHHHhhCCCCceEEEeCcHHHHHHhhcC---CCCCeEEEEECccceeEeE
Q 020972           94 AVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTM---GKLHGCVLIAGTGTIAYGF  162 (319)
Q Consensus        94 ~i~~Igig~pG~~~~~~~~~l~~~L~~~~~~~~pv~v~NDa~aa~~g~~~---g~~~~v~v~~GTGigg~gi  162 (319)
                      .+..+.|.+|-.-+......+++..+. .+. ..+.+-|+..||+++-..   ..+..+++=+|-|.--..+
T Consensus       159 ~v~~aVITVPayF~~~qR~at~~Aa~~-AGl-~v~rlInEPtAAAlayg~~~~~~~~vlV~DlGGGT~DvSi  228 (657)
T PTZ00186        159 KVSNAVVTCPAYFNDAQRQATKDAGTI-AGL-NVIRVVNEPTAAALAYGMDKTKDSLIAVYDLGGGTFDISV  228 (657)
T ss_pred             ccceEEEEECCCCChHHHHHHHHHHHH-cCC-CeEEEEcChHHHHHHHhccCCCCCEEEEEECCCCeEEEEE
Confidence            466677888887665544445554433 232 347899999998885321   2245667777777644444

>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T

Probab=88.57  E-value=0.66  Score=36.89  Aligned_cols=93  Identities=17%  Similarity=0.139  Sum_probs=41.5

Q ss_pred             EEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccC--HHHHH--HHHHHHHHHHHHHcCCC-ccccceE
Q 020972           24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVG--EDAAR--ETIEKVMADALLKSGSN-RSAVRAV   98 (319)
Q Consensus        24 ~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~--~~~~~--~~i~~~i~~~l~~~~~~-~~~i~~I   98 (319)
                      +++||+|+++|+++++..          +........+.....+.+  ...+.  +.+.+.++..++++... ..++..+
T Consensus         1 i~~iDiGs~~~~~~i~~~----------~~~~~~~vl~~g~~~s~gi~~g~Itd~~~i~~~i~~a~~~AE~~~k~~i~~v   70 (120)
T PF14450_consen    1 IVVIDIGSSKTKVAIAED----------GSDGYIRVLGVGEVPSKGIKGGHITDIEDISKAIKIAIEEAERLAKCEIGSV   70 (120)
T ss_dssp             EEEEEE-SSSEEEEEEET----------TEEEEEEEES----------HHHHH--HHHHHHHT--HHHHHHH-HHHH--S
T ss_pred             CEEEEcCCCcEEEEEEEe----------CCCCcEEEEEEecccccccCCCEEEEHHHHHHHHHHHHHHHHHHhCCeeeEE
Confidence            578999999999999985          333322222211000011  23333  34444444433332211 1234444


Q ss_pred             EEeecCCCCchhHHHHHHHHHhhCCCCceEEEeC
Q 020972           99 CLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHN  132 (319)
Q Consensus        99 gig~pG~~~~~~~~~l~~~L~~~~~~~~pv~v~N  132 (319)
                      .+++++    ..-..+.+.+++.++  .|+.+++
T Consensus        71 ~v~~g~----s~l~~i~~~~~~~~~--~~v~v~~   98 (120)
T PF14450_consen   71 YVSIGG----SKLQNIEELIEKCGG--MPVRVAG   98 (120)
T ss_dssp             --TTGG----GGSTTHHHHHHHHHT--S-EEE--
T ss_pred             EecCch----hHHHhHHHHHHHhCC--CcEEEcc
Confidence            444422    122357888888887  7899988

>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional

Probab=88.18  E-value=7.6  Score=38.30  Aligned_cols=145  Identities=12%  Similarity=0.146  Sum_probs=74.4

Q ss_pred             EEEEEEcCccceeEEEEeCccCC-------CCCCC-CCCeEEEEecCCCCccccCHHHH-HHHHHHHHHHHHHHcCCCcc
Q 020972           23 VILGLDGGTTSTVCICMPVISMS-------DSLPD-PLPVLARAAAGCSNHNSVGEDAA-RETIEKVMADALLKSGSNRS   93 (319)
Q Consensus        23 ~~lGIDiGGTk~~~~l~d~~~~~-------~~~~~-~G~il~~~~~~~~~~~~~~~~~~-~~~i~~~i~~~l~~~~~~~~   93 (319)
                      .-+|||||.|.|.+++-.+....       +.++= +-+++.+...-.++.  .+...+ .+.|.+.+++-.+++++.++
T Consensus         7 ~SVGIDIGTsTTqlvfSrl~l~n~a~~~~vpr~~I~dkev~yrS~i~fTPl--~~~~~ID~~~i~~~V~~ey~~Agi~~~   84 (475)
T PRK10719          7 LSVGIDIGTTTTQVIFSRLELENRASVFQVPRIEIIDKEIIYRSPIYFTPL--LKQGEIDEAAIKELIEEEYQKAGIAPE   84 (475)
T ss_pred             EEEEEeccCceEEEEEEEEEEecccccccCceEEEeeeEEEEecCceecCC--CCCccccHHHHHHHHHHHHHHcCCCHH
Confidence            67999999999988765541110       01100 123333332211111  111111 35678888888999999998


Q ss_pred             ccceEEEeecCCCCchhHHHHHHHHHhhCCC-CceEEEe----CcHHHHHHh----hc-CC-CCCeEEEEECccceeEeE
Q 020972           94 AVRAVCLAVSGVNHPTDQQRILNWLRDIFPG-NVRLYVH----NDALAALAS----GT-MG-KLHGCVLIAGTGTIAYGF  162 (319)
Q Consensus        94 ~i~~Igig~pG~~~~~~~~~l~~~L~~~~~~-~~pv~v~----NDa~aa~~g----~~-~g-~~~~v~v~~GTGigg~gi  162 (319)
                      +|..=..=+.|....  ..++.+.+++.-.. +.-|+-.    =+...+.+|    .. .. ..-.+++=+|.|.--..+
T Consensus        85 die~~ahIITg~~~~--~~Nl~~~v~~~~~~~gdfVVA~AG~~le~iva~~ASg~avLseEke~gVa~IDIGgGTT~iaV  162 (475)
T PRK10719         85 SIDSGAVIITGETAR--KENAREVVMALSGSAGDFVVATAGPDLESIIAGKGAGAQTLSEERNTRVLNIDIGGGTANYAL  162 (475)
T ss_pred             HccccEEEEEechhH--HHHHHHHHHHhcccccceeeeccCccHHHhhhHHHhhHHHhhhhccCceEEEEeCCCceEEEE
Confidence            886544445554332  23555555542100 0111000    011112221    11 11 223566788998877888


Q ss_pred             ecCCcEEee
Q 020972          163 TEDGRDARA  171 (319)
Q Consensus       163 i~dG~~~ra  171 (319)
                      ..+|++...
T Consensus       163 f~~G~l~~T  171 (475)
T PRK10719        163 FDAGKVIDT  171 (475)
T ss_pred             EECCEEEEE
Confidence            899987653

>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]

Probab=88.08  E-value=3.3  Score=36.29  Aligned_cols=130  Identities=18%  Similarity=0.162  Sum_probs=70.3

Q ss_pred             CcEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccc----cCHHHHHHHHHHHHHHHHHHcCCCccccc
Q 020972           21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNS----VGEDAARETIEKVMADALLKSGSNRSAVR   96 (319)
Q Consensus        21 ~~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~----~~~~~~~~~i~~~i~~~l~~~~~~~~~i~   96 (319)
                      ++..+|||+|...+-..++|.         +|+.+.-... .....+    .++-+.++.+.++.+.+-++.|+.   +.
T Consensus        28 sk~~vGVDLGT~~iV~~vlD~---------d~~Pvag~~~-~advVRDGiVvdf~eaveiVrrlkd~lEk~lGi~---~t   94 (277)
T COG4820          28 SKLWVGVDLGTCDIVSMVLDR---------DGQPVAGCLD-WADVVRDGIVVDFFEAVEIVRRLKDTLEKQLGIR---FT   94 (277)
T ss_pred             CceEEEeecccceEEEEEEcC---------CCCeEEEEeh-hhhhhccceEEehhhHHHHHHHHHHHHHHhhCeE---ee
Confidence            468999999999999999999         8998865331 111111    234444555555555555555542   21


Q ss_pred             eEEEe-ecCCC--CchhHHHHHHHHHhhCCCCceEEEeCcHHHHHHhhcCCCCCeEEEEECccceeEeEecCCcEEe
Q 020972           97 AVCLA-VSGVN--HPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTMGKLHGCVLIAGTGTIAYGFTEDGRDAR  170 (319)
Q Consensus        97 ~Igig-~pG~~--~~~~~~~l~~~L~~~~~~~~pv~v~NDa~aa~~g~~~g~~~~v~v~~GTGigg~gii~dG~~~r  170 (319)
                      -..-+ -||..  +++-   ....++.. +  ..|.-.=|--.|+. ...+.+|+.+|-+|.|.-|..++.+|++..
T Consensus        95 ha~taiPPGt~~~~~ri---~iNViESA-G--levl~vlDEPTAaa-~vL~l~dg~VVDiGGGTTGIsi~kkGkViy  164 (277)
T COG4820          95 HAATAIPPGTEQGDPRI---SINVIESA-G--LEVLHVLDEPTAAA-DVLQLDDGGVVDIGGGTTGISIVKKGKVIY  164 (277)
T ss_pred             eccccCCCCccCCCceE---EEEeeccc-C--ceeeeecCCchhHH-HHhccCCCcEEEeCCCcceeEEEEcCcEEE
Confidence            11112 24432  1111   11223222 2  33222222222211 224567888999998877777889998764

>TIGR03723 bact_gcp putative glycoprotease GCP

Probab=87.76  E-value=24  Score=33.00  Aligned_cols=102  Identities=19%  Similarity=0.145  Sum_probs=68.1

Q ss_pred             EEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCC---------CccccCHHHHHHHHHHHHHHHHHHcCCCccc
Q 020972           24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCS---------NHNSVGEDAARETIEKVMADALLKSGSNRSA   94 (319)
Q Consensus        24 ~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~---------~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~   94 (319)
                      +|+||--...+.+++++.         +.+++...+....         .+ +.....-.+.|...+++++++++....+
T Consensus         1 iLaIdTs~~~~sval~~~---------~~~il~~~~~~~~~~~~~~gGi~p-~~~~~~H~~~l~~~i~~~l~~~~~~~~~   70 (314)
T TIGR03723         1 ILGIETSCDETAVAIVDD---------GKGLLSNIVASQIELHARYGGVVP-ELASRAHLEAIPPLIEEALAEAGLTLSD   70 (314)
T ss_pred             CEEEECcccceEEEEEEC---------CceEEEEEEeehhhhccCcCCcCc-chhHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence            489999888899999986         4457765443110         01 1123445677889999999999998889


Q ss_pred             cceEEEeecCCCCch---hHHHHHHHHHhhCCCCceEEEeCcHHHHH
Q 020972           95 VRAVCLAVSGVNHPT---DQQRILNWLRDIFPGNVRLYVHNDALAAL  138 (319)
Q Consensus        95 i~~Igig~pG~~~~~---~~~~l~~~L~~~~~~~~pv~v~NDa~aa~  138 (319)
                      |.+|+++. ||....   -+....+-|...++  +|++-.|--.+-+
T Consensus        71 id~iav~~-GPGsftglrig~~~Ak~la~~~~--~p~~~v~h~~aha  114 (314)
T TIGR03723        71 IDAIAVTA-GPGLIGALLVGVSFAKALALALN--KPLIGVNHLEGHL  114 (314)
T ss_pred             CCEEEEec-CCChHHhHHHHHHHHHHHHHHhC--CCEEecccHHHHH
Confidence            99988763 443322   23456666776776  8987777655433

This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas

>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional

Probab=87.24  E-value=25  Score=35.08  Aligned_cols=137  Identities=14%  Similarity=0.081  Sum_probs=83.3

Q ss_pred             CcEEEEEEcCccceeEEEEeCccCCCCCCCCCC--eEEEEecC---CCCccccCH--HHHHHHHHHHHHHHHHHcC-CCc
Q 020972           21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLP--VLARAAAG---CSNHNSVGE--DAARETIEKVMADALLKSG-SNR   92 (319)
Q Consensus        21 ~~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~--il~~~~~~---~~~~~~~~~--~~~~~~i~~~i~~~l~~~~-~~~   92 (319)
                      ..++-.||+|..+++..+++..        ++.  ++.+.+..   .......+.  ++.+++..++++.+.+... ...
T Consensus         5 ~~~~A~IDIGSNSirL~I~~~~--------~~~~~~l~~~k~~vrLg~g~~~~g~Ls~e~i~r~~~~L~~F~~~~~~~~v   76 (496)
T PRK11031          5 SSLYAAIDLGSNSFHMLVVREV--------AGSIQTLARIKRKVRLAAGLDSDNALSNEAMERGWQCLRLFAERLQDIPP   76 (496)
T ss_pred             CCEEEEEEccccceeEEEEEec--------CCceEEeecceeEEEccCCcCcCCCcCHHHHHHHHHHHHHHHHHHHhCCC
Confidence            4578999999999999999862        232  22222111   000101121  4556666666665544331 112


Q ss_pred             cccceEEEeecCCCCchhHHHHHHHHHhhCCCCceEEEeCcHHHHHH---hhc--C-CCCCeEEEEECccceeEeEecCC
Q 020972           93 SAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALA---SGT--M-GKLHGCVLIAGTGTIAYGFTEDG  166 (319)
Q Consensus        93 ~~i~~Igig~pG~~~~~~~~~l~~~L~~~~~~~~pv~v~NDa~aa~~---g~~--~-g~~~~v~v~~GTGigg~gii~dG  166 (319)
                      +++.  .++.+-+-+..+...+.+.+++.++  .+|.|-+...=|.+   |..  . ..++.+++=+|.|+--..+..++
T Consensus        77 ~~i~--~vATsAvReA~N~~~fl~~i~~~tG--l~ievIsG~eEA~l~~~gv~~~l~~~~~~lviDIGGGStEl~~~~~~  152 (496)
T PRK11031         77 SQIR--VVATATLRLAVNADEFLAKAQEILG--CPVQVISGEEEARLIYQGVAHTTGGADQRLVVDIGGASTELVTGTGA  152 (496)
T ss_pred             CeEE--EEEeHHHHcCcCHHHHHHHHHHHHC--CCeEEeCHHHHHHHHHHhhhhccCCCCCEEEEEecCCeeeEEEecCC
Confidence            2443  4677777666677889999999997  89999988774433   321  1 22457889999998666555566


Q ss_pred             cEE
Q 020972          167 RDA  169 (319)
Q Consensus       167 ~~~  169 (319)
                      ++.
T Consensus       153 ~~~  155 (496)
T PRK11031        153 QAT  155 (496)
T ss_pred             cee
Confidence            543

>PF03309 Pan_kinase: Type III pantothenate kinase; InterPro: IPR004619 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway

Probab=87.20  E-value=19  Score=31.30  Aligned_cols=18  Identities=28%  Similarity=0.150  Sum_probs=15.6

Q ss_pred             EEEEEcCccceeEEEEeC
Q 020972           24 ILGLDGGTTSTVCICMPV   41 (319)
Q Consensus        24 ~lGIDiGGTk~~~~l~d~   41 (319)
                      +|.||+|-|++|+++++.
T Consensus         1 ~L~iDiGNT~ik~~~~~~   18 (206)
T PF03309_consen    1 ILLIDIGNTRIKWALFDG   18 (206)
T ss_dssp             EEEEEE-SSEEEEEEEET
T ss_pred             CEEEEECCCeEEEEEEEC
Confidence            588999999999999986

CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This entry represents the type III pantothenate kinase family, such as that found in Helicobacter pylori. PanK III enzymes have a much wider phylogenic distribution than PanK I, and differs significantly in biochemical activity. PanK III enzymes are are not feedback inhibited by CoA concentration (which is also the case for PanK II enzymes), and PanK III enzymes have an unusually high Km for ATP []. ; GO: 0045893 positive regulation of transcription, DNA-dependent; PDB: 2GTD_E 3BF1_F 3BEX_D 3BF3_F 2NRH_B 2H3G_X 3DJC_J 2F9T_A 2F9W_A.

>PF13941 MutL: MutL protein

Probab=86.90  E-value=2.8  Score=41.36  Aligned_cols=57  Identities=12%  Similarity=0.147  Sum_probs=40.3

Q ss_pred             EEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCC
Q 020972           24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGS   90 (319)
Q Consensus        24 ~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~   90 (319)
                      +|.+|+|.|.||+.++|...      .+.+++.+.+.+++- .   +..+..-+.++++++.++.+.
T Consensus         2 ~L~~DiGST~Tk~~l~d~~~------~~~~~ig~a~apTTv-~---~~Dv~~G~~~A~~~l~~~~~~   58 (457)
T PF13941_consen    2 VLVVDIGSTYTKVTLFDLVD------GEPRLIGQAEAPTTV-E---PGDVTIGLNNALEQLEEQTPA   58 (457)
T ss_pred             EEEEEeCCcceEEeEEeccC------CccEEEEEEeCCCCc-C---cccHHHHHHHHHHHHHHhcCC
Confidence            68999999999999999211      177888998876643 1   145556667777776666543

>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length

Probab=86.55  E-value=30  Score=32.83  Aligned_cols=41  Identities=17%  Similarity=0.040  Sum_probs=30.5

Q ss_pred             EEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHH
Q 020972           26 GLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARET   76 (319)
Q Consensus        26 GIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~   76 (319)
                      |||-|.+++.++.+|.         +|+++...+.++.... .+|..+++.
T Consensus         1 GIDpGT~s~dv~~~dd---------~g~v~~~~~ipt~~v~-~~p~~iv~~   41 (343)
T PF07318_consen    1 GIDPGTKSFDVCGLDD---------DGKVIFYFSIPTEEVA-KNPSIIVEE   41 (343)
T ss_pred             CCCCCCCcEEEEEEcc---------CCcEEEEeeccHHHhh-hCHHHHHHH
Confidence            6899999999999997         7999999888654332 455544433

The function of this family is unknown.

>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes

Probab=85.11  E-value=16  Score=34.42  Aligned_cols=71  Identities=14%  Similarity=0.204  Sum_probs=46.5

Q ss_pred             eEEEeecCCCCchhHHHHHHHHHhhCCCCceEEEeCcHHHHHHhhcC---CCCCeEEEEECccceeEeEecCCcEE
Q 020972           97 AVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTM---GKLHGCVLIAGTGTIAYGFTEDGRDA  169 (319)
Q Consensus        97 ~Igig~pG~~~~~~~~~l~~~L~~~~~~~~pv~v~NDa~aa~~g~~~---g~~~~v~v~~GTGigg~gii~dG~~~  169 (319)
                      .+.+++|.-.+.-+...+.+.+.+. +. ..|++...--+|++|...   .....++|-+|.|.-=.+++..|.+.
T Consensus        95 ~vvi~vP~~~T~verrA~~~a~~~a-Ga-~~V~li~ep~AaAiGaGl~i~~~~g~miVDIG~GtTdiavislggiv  168 (326)
T PF06723_consen   95 RVVICVPSGITEVERRALIDAARQA-GA-RKVYLIEEPIAAAIGAGLDIFEPRGSMIVDIGGGTTDIAVISLGGIV  168 (326)
T ss_dssp             EEEEEE-SS--HHHHHHHHHHHHHT-T--SEEEEEEHHHHHHHHTT--TTSSS-EEEEEE-SS-EEEEEEETTEEE
T ss_pred             eEEEEeCCCCCHHHHHHHHHHHHHc-CC-CEEEEecchHHHHhcCCCCCCCCCceEEEEECCCeEEEEEEECCCEE
Confidence            4678999988877777888888764 32 689999999999998642   23345678888887556666666554

In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.

>PRK13929 rod-share determining protein MreBH; Provisional

Probab=84.49  E-value=36  Score=31.97  Aligned_cols=72  Identities=13%  Similarity=0.173  Sum_probs=48.9

Q ss_pred             eEEEeecCCCCchhHHHHHHHHHhhCCCCceEEEeCcHHHHHHhhcC---CCCCeEEEEECccceeEeEecCCcEEe
Q 020972           97 AVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTM---GKLHGCVLIAGTGTIAYGFTEDGRDAR  170 (319)
Q Consensus        97 ~Igig~pG~~~~~~~~~l~~~L~~~~~~~~pv~v~NDa~aa~~g~~~---g~~~~v~v~~GTGigg~gii~dG~~~r  170 (319)
                      .+-+++|-..+......+.+.++. ++. ..+.+.|+.-+|+++...   .....+++-+|.|.--..++..|.+..
T Consensus       100 ~vvitvP~~~~~~~R~~l~~a~~~-ag~-~~~~li~ep~Aaa~~~g~~~~~~~~~lvvDiG~gtt~v~vi~~~~~~~  174 (335)
T PRK13929        100 NVVVCTPSGSTAVERRAISDAVKN-CGA-KNVHLIEEPVAAAIGADLPVDEPVANVVVDIGGGTTEVAIISFGGVVS  174 (335)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHHH-cCC-CeeEeecCHHHHHHhcCCCcCCCceEEEEEeCCCeEEEEEEEeCCEEE
Confidence            466888987766666677776654 442 458999999999886421   234578888999886666654554443

>PF00814 Peptidase_M22: Glycoprotease family; InterPro: IPR000905 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=84.37  E-value=32  Score=31.32  Aligned_cols=67  Identities=16%  Similarity=0.112  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHHHHHHHcCCCccccceEEEeecCCCCch---hHHHHHHHHHhhCCCCceEEEeCcHHHHHHh
Q 020972           71 DAARETIEKVMADALLKSGSNRSAVRAVCLAVSGVNHPT---DQQRILNWLRDIFPGNVRLYVHNDALAALAS  140 (319)
Q Consensus        71 ~~~~~~i~~~i~~~l~~~~~~~~~i~~Igig~pG~~~~~---~~~~l~~~L~~~~~~~~pv~v~NDa~aa~~g  140 (319)
                      ..-.+.|..+++++++++++...+|.+|+++. ||....   -+..+.+-|...++  +|++=.|--.+-++.
T Consensus        27 r~H~~~L~~~i~~~l~~~~~~~~did~iavt~-GPGsftgLrvG~~~Ak~La~~~~--~Pli~v~~l~a~a~~   96 (268)
T PF00814_consen   27 RQHSENLPPLIEELLKEAGISLSDIDAIAVTR-GPGSFTGLRVGLSFAKGLALALN--IPLIGVSHLEAHALS   96 (268)
T ss_dssp             HHHHHHHHHHHHHHHHHHTS-GGGESEEEEEE-ESS-HHHHHHHHHHHHHHHHHTT----EEEEEHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCCHHHCCEEEEec-CCCcccccHHHHHHHHHHHHHhC--CCeEeeccHHHHHHh
Confidence            33467788999999999999999999988763 443332   24566777877787  899888887765443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M22 (clan MK). The type example being O-sialoglycoprotein endopeptidase (3.4.24.57 from EC) from Pasteurella haemolytica (Mannheimia haemolytica). O-Sialoglycoprotein endopeptidase is secreted by the bacterium P. haemolytica, and digests only proteins that are heavily sialylated, in particular those with sialylated serine and threonine residues []. Substrate proteins include glycophorin A and leukocyte surface antigens CD34, CD43, CD44 and CD45 [, ]. Removal of glycosylation, by treatment with neuraminidase, completely negates susceptibility to O-sialoglycoprotein endopeptidase digestion [, ]. Sequence similarity searches have revealed other members of the M22 family, from yeast, Mycobacterium, Haemophilus influenzae and the cyanobacterium Synechocystis []. The zinc-binding and catalytic residues of this family have not been determined, although the motif HMEGH may be a zinc-binding region [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2A6A_A 2GEL_G 2GEM_B 1OKJ_B 3ENO_A 3EN9_B 2VWB_B 3ENH_B 2IVO_D 2IVP_A ....

>PLN02920 pantothenate kinase 1

Probab=84.02  E-value=43  Score=32.43  Aligned_cols=45  Identities=11%  Similarity=0.116  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhcccccccEEEEcchhhhcHHHHHH
Q 020972          253 EVANKILQDSVEELALSVKAVVQRLSLSGEGVTYTKILKEKVPLLMENILFLLSWLVVFL  312 (319)
Q Consensus       253 ~~A~~il~~a~~~Lg~~la~li~~l~~~~~~~~~~~~~~~~~~ivl~Gg~~~~~~~~~~~  312 (319)
                      -.|+.++.-....++..........+.              ..||++|... +..+...+
T Consensus       272 Dia~SLL~mVs~nIgqiA~L~A~~~~i--------------k~Ivf~G~fi-r~~~~tm~  316 (398)
T PLN02920        272 DVARSLLRMISNNIGQISYLNALRFGL--------------KRIFFGGFFI-RGHSYTMD  316 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCC--------------CEEEEEeecc-cCcHHHHH
Confidence            456667776666666665555556665              4799998866 55444443

>COG1214 Inactive homolog of metal-dependent proteases, putative molecular chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=83.51  E-value=23  Score=31.40  Aligned_cols=100  Identities=17%  Similarity=0.097  Sum_probs=69.6

Q ss_pred             EEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceEEEee
Q 020972           23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV  102 (319)
Q Consensus        23 ~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Igig~  102 (319)
                      ++|+||--+..+.+++++..        +++++.+......       ..--+++...+++++.+++....++.+|.++.
T Consensus         2 ~iLaiDTs~~~~s~ai~~~~--------~~~vl~~~~~~~~-------r~hse~l~~~i~~ll~~~~~~~~dld~iav~~   66 (220)
T COG1214           2 KILAIDTSTSALSVALYLAD--------DGKVLAEHTEKLK-------RNHAERLMPMIDELLKEAGLSLQDLDAIAVAK   66 (220)
T ss_pred             cEEEEEcChhhhhhheeecC--------CCcEEEEEEEecc-------ccHHHHHHHHHHHHHHHcCCCHHHCCEEEEcc
Confidence            58999988888887777642        6888888765321       12235677888889999988888898888864


Q ss_pred             cCCCCchh---HHHHHHHHHhhCCCCceEEEeCcHHHHHHh
Q 020972          103 SGVNHPTD---QQRILNWLRDIFPGNVRLYVHNDALAALAS  140 (319)
Q Consensus       103 pG~~~~~~---~~~l~~~L~~~~~~~~pv~v~NDa~aa~~g  140 (319)
                       ||.+-.+   +.-+.+-|.-.++  +|++--|--.+.+..
T Consensus        67 -GPGSFTGlRIG~~~AkgLA~~l~--iplvgvssL~~~A~~  104 (220)
T COG1214          67 -GPGSFTGLRIGVAFAKGLALALN--IPLVGVSSLEALAQG  104 (220)
T ss_pred             -CCCcccchhhHHHHHHHHHHHcC--CCEEEeCHHHHHHHh
Confidence             4444322   4455566766666  899888877765543

>COG5146 PanK Pantothenate kinase, acetyl-CoA regulated [Coenzyme metabolism]

Probab=83.13  E-value=16  Score=32.85  Aligned_cols=47  Identities=19%  Similarity=0.197  Sum_probs=29.1

Q ss_pred             ceEEEeCcHHHHHHhhc-C--C--CCCeEEEEECccceeEeEecCCc--EEeeCCC
Q 020972          126 VRLYVHNDALAALASGT-M--G--KLHGCVLIAGTGTIAYGFTEDGR--DARAAGA  174 (319)
Q Consensus       126 ~pv~v~NDa~aa~~g~~-~--g--~~~~v~v~~GTGigg~gii~dG~--~~raGg~  174 (319)
                      ..|+++||+.+-.++-. .  +  .-+-+++.+|+|+.-  +..+|.  .-|.||-
T Consensus       120 ~evFv~~d~~~e~~~~~~~~~~h~lypyilvNiGsGvSi--lkvtgpsqf~RvGGs  173 (342)
T COG5146         120 AEVFVEFDAASEGLGILLKEQGHDLYPYILVNIGSGVSI--LKVTGPSQFERVGGS  173 (342)
T ss_pred             HHHeeeeccccchhhhhhhhccccccceeeEeccCCeEE--EEecCcchhcccccc
Confidence            46899999876444321 1  2  245688999999843  445664  3466664

>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]

Probab=82.98  E-value=43  Score=31.72  Aligned_cols=120  Identities=16%  Similarity=0.186  Sum_probs=78.1

Q ss_pred             EEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCC----Ccc----ccCHHHHHHHHHHHHHHHHHHcCCCccc
Q 020972           23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCS----NHN----SVGEDAARETIEKVMADALLKSGSNRSA   94 (319)
Q Consensus        23 ~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~----~~~----~~~~~~~~~~i~~~i~~~l~~~~~~~~~   94 (319)
                      .+|||+---..|-+++++.         +. ++........    ...    +.-...-.++|..++++++++++++.++
T Consensus         2 ~iLGIEtScDeT~vaIv~~---------~~-ilan~~~sq~~~h~~~GGVvPe~Asr~H~e~i~~li~~al~eA~~~~~d   71 (342)
T COG0533           2 IILGIETSCDETGVAIVDE---------EK-ILANVVASQIELHARYGGVVPELASRHHVENIPPLIEEALAEAGVSLED   71 (342)
T ss_pred             eEEEEEcccccceeEEEec---------cC-hhheehhhcccccCCCCCcCccHHHHHHHHHHHHHHHHHHHHcCCCccc
Confidence            5899998888999999986         44 5543322111    000    1112334678999999999999998889


Q ss_pred             cceEEEe-ecCCCCc-hhHHHHHHHHHhhCCCCceEEEeCcHHHHHHhhc--CC-CCCeEEEEEC
Q 020972           95 VRAVCLA-VSGVNHP-TDQQRILNWLRDIFPGNVRLYVHNDALAALASGT--MG-KLHGCVLIAG  154 (319)
Q Consensus        95 i~~Igig-~pG~~~~-~~~~~l~~~L~~~~~~~~pv~v~NDa~aa~~g~~--~g-~~~~v~v~~G  154 (319)
                      |..|++. -||..-. .-+....+.|.-.++  .|++=.|-...-+++..  .+ ..+++.+.+.
T Consensus        72 ID~IA~T~gPGL~gaL~VG~~~Ak~LA~a~~--kPli~VnH~~gHi~a~~l~~~~~~p~v~LlVS  134 (342)
T COG0533          72 IDAIAVTAGPGLGGALLVGATAAKALALALN--KPLIPVNHLEGHIEAARLETGLAFPPVALLVS  134 (342)
T ss_pred             CCEEEEecCCCchhHHHHHHHHHHHHHHHhC--CCEeecchHHHHHHHHHhccCCCCCcEEEEEe
Confidence            9998874 3554321 234566777877776  89999998886555432  22 4455555543

>TIGR01175 pilM type IV pilus assembly protein PilM

Probab=82.68  E-value=5.5  Score=37.43  Aligned_cols=73  Identities=16%  Similarity=0.180  Sum_probs=41.2

Q ss_pred             cEEEEEEcCccceeEEEEeCccCCCCCCCCC--CeEEEEecCC-CCccccCHHHHHHHHHHHHHHHHHHcCCCccccceE
Q 020972           22 EVILGLDGGTTSTVCICMPVISMSDSLPDPL--PVLARAAAGC-SNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAV   98 (319)
Q Consensus        22 ~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G--~il~~~~~~~-~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~I   98 (319)
                      ..++|||+|.++++++.+...        .+  ++......+. .+....+.-.-.+.+.+.+++++++.+.   +...+
T Consensus         3 ~~~vgiDIg~~~Ik~v~~~~~--------~~~~~v~~~~~~~~p~~~i~~g~i~d~~~~~~~l~~~~~~~~~---~~k~v   71 (348)
T TIGR01175         3 SLLVGIDIGSTSVKVAQLKRS--------GDRYKLEHYAVEPLPAGIFTEGHIVEYQAVAEALKELLSELGI---NTKKA   71 (348)
T ss_pred             CcEEEEEeccCeEEEEEEEec--------CCceEEEEEEEEECCCCcccCCCccCHHHHHHHHHHHHHHcCC---CcceE
Confidence            368999999999999998741        22  3333333221 1111111111123456667777776654   34456


Q ss_pred             EEeecCC
Q 020972           99 CLAVSGV  105 (319)
Q Consensus        99 gig~pG~  105 (319)
                      .+++|+.
T Consensus        72 ~~alp~~   78 (348)
T TIGR01175        72 ATAVPGS   78 (348)
T ss_pred             EEEecCC
Confidence            7788884

This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.

>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=82.20  E-value=3  Score=39.12  Aligned_cols=71  Identities=20%  Similarity=0.212  Sum_probs=41.2

Q ss_pred             EEEEEEcCccceeEEEEeCccCCCCCCCCCCeEE--EEecCC--CCccccCHHHHHHHHHHHHHHHHHHcCCCccccceE
Q 020972           23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLA--RAAAGC--SNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAV   98 (319)
Q Consensus        23 ~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~--~~~~~~--~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~I   98 (319)
                      ..+|||||.+++|++....         .|.-..  .....+  .+....+.-.=.+.+.+.+++++.++++...   .+
T Consensus        11 ~~vGIdI~~~sVKvvqLs~---------~g~~~kLe~y~~~~lp~~iv~dg~ivd~~av~~~Lk~ala~~gi~~k---~a   78 (354)
T COG4972          11 AAVGIDIGSHSVKVVQLSR---------SGNRYKLEKYASEPLPENIVADGKIVDYDAVASALKRALAKLGIKSK---NA   78 (354)
T ss_pred             ceeeEeeccceEEEEEEcc---------cCCceeeeeeeecccCccccccCCcccHHHHHHHHHHHHHhcCcchh---hh
Confidence            6899999999999988874         343322  222111  1221111111134566777778888877543   34


Q ss_pred             EEeecCC
Q 020972           99 CLAVSGV  105 (319)
Q Consensus        99 gig~pG~  105 (319)
                      ..++||-
T Consensus        79 a~AVP~s   85 (354)
T COG4972          79 ATAVPGS   85 (354)
T ss_pred             hhhcCcc
Confidence            4677885

>PTZ00452 actin; Provisional

Probab=80.83  E-value=49  Score=31.67  Aligned_cols=90  Identities=21%  Similarity=0.303  Sum_probs=56.3

Q ss_pred             HHHHHHHHHHH-HcCCCccccceEEEeecCCCCchhHHHHHHHHHhhCCCCce-EEEeCcHHHHHHhhcCCCCCeEEEEE
Q 020972           76 TIEKVMADALL-KSGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVR-LYVHNDALAALASGTMGKLHGCVLIA  153 (319)
Q Consensus        76 ~i~~~i~~~l~-~~~~~~~~i~~Igig~pG~~~~~~~~~l~~~L~~~~~~~~p-v~v~NDa~aa~~g~~~g~~~~v~v~~  153 (319)
                      .+....+.++. +..+.+++ ..+-+.-|-...+.....+.+.|=+.|+  +| +++.+++.+++++  .|..++++|-+
T Consensus        81 ~~e~iw~~~f~~~l~v~p~~-~pvlitE~~~~~~~~Re~l~eilFE~~~--vp~~~~~~~~~lslya--~g~~tglVVDi  155 (375)
T PTZ00452         81 DIEIIWHHAFYNELCMSPED-QPVFMTDAPMNSKFNRERMTQIMFETFN--TPCLYISNEAVLSLYT--SGKTIGLVVDS  155 (375)
T ss_pred             HHHHHHHHHHHhhcCCCccc-CceeeecCCCCCHHHHHHHHHHHhhccC--CceEEEechHHHHHHH--CCCceeeeecC
Confidence            34444444432 23344432 2333444444444455677777777787  65 7889999999886  35578999999


Q ss_pred             CccceeEeEecCCcEEe
Q 020972          154 GTGTIAYGFTEDGRDAR  170 (319)
Q Consensus       154 GTGigg~gii~dG~~~r  170 (319)
                      |.+..-.--+.||..+.
T Consensus       156 G~~~t~v~PV~dG~~l~  172 (375)
T PTZ00452        156 GEGVTHCVPVFEGHQIP  172 (375)
T ss_pred             CCCcceEEEEECCEEec
Confidence            99874444557887653

>PLN02902 pantothenate kinase

Probab=80.23  E-value=88  Score=33.46  Aligned_cols=43  Identities=7%  Similarity=0.102  Sum_probs=29.0

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhcccccccEEEEcchhhhcHHH
Q 020972          252 DEVANKILQDSVEELALSVKAVVQRLSLSGEGVTYTKILKEKVPLLMENILFLLSWLV  309 (319)
Q Consensus       252 D~~A~~il~~a~~~Lg~~la~li~~l~~~~~~~~~~~~~~~~~~ivl~Gg~~~~~~~~  309 (319)
                      .-.|+.++.-....++..........+.              ..|+++|... +..+.
T Consensus       320 eDiarSLL~mIs~NIGqiA~L~A~~~~i--------------krIvF~G~fI-r~h~~  362 (876)
T PLN02902        320 EDISLSLLRMISYNIGQISYLNALRFGL--------------KRIFFGGFFI-RGHAY  362 (876)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCC--------------CEEEEeccee-cCCcc
Confidence            3457777777777777766666666665              4688888887 55443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	319
2e2n_A	299	Crystal Structure Of Sulfolobus Tokodaii Hexokinase		4e-13
2ch5_A	347	Crystal Structure Of Human N-Acetylglucosamine Kina		3e-08
2ch6_A	344	Crystal Structure Of Human N-Acetylglucosamine Kina		3e-08

>pdb|2E2N|A Chain A, Crystal Structure Of Sulfolobus Tokodaii Hexokinase In The Apo Form Length = 299

Iteration: 1
 Score = 72.0 bits (175), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 72/284 (25%), Positives = 126/284 (44%), Gaps = 27/284 (9%)
Query: 23  VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMA 82
           +I+G+D G T T  +                 +   ++G  N+++VG   A E I++ + 
Sbjct: 3   IIVGVDAGGTKTKAVAYDCEG---------NFIGEGSSGPGNYHNVGLTRAIENIKEAVK 53
Query: 83  DALLKSGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGT 142
            A       +     V + V+G++   D +        I P   ++ + +D + AL + T
Sbjct: 54  IAA------KGEADVVGMGVAGLDSKFDWENFTPLASLIAP---KVIIQHDGVIALFAET 104
Query: 143 MGKLHGCVLIAGTGTIAYGFTEXXXXXXXXXXXPILGDWGSGYGIAAQALTAVIRAYDGR 202
           +G+  G V+IAGTG++  G+              +L D GS Y +  +AL  V++  DG 
Sbjct: 105 LGE-PGVVVIAGTGSVVEGYN-GKEFLRVGGRGWLLSDDGSAYWVGRKALRKVLKMMDGL 162
Query: 203 GPDTMLTSNILSTLELSSPDELIGWTYVDPSWAR-IAALVPVVVSCAEAGDEVANKILQD 261
              T+L + +L T+ +   DEL+ W+Y        +A++   V   A  GD VA  IL+ 
Sbjct: 163 ENKTILYNKVLKTINVKDLDELVMWSYTSSCQIDLVASIAKAVDEAANEGDTVAMDILKQ 222
Query: 262 SVEELA-----LSVKAVVQRLSLSGEGVTYTKILKEKVPLLMEN 300
             E LA     L+ K    ++ L G G+  + I  +   L +E 
Sbjct: 223 GAELLASQAVYLARKIGTNKVYLKG-GMFRSNIYHKFFTLYLEK 265

>pdb|2CH5|A Chain A, Crystal Structure Of Human N-Acetylglucosamine Kinase In Complex With N-Acetylglucosamine Length = 347

Iteration: 1
 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 60/227 (26%), Positives = 97/227 (42%), Gaps = 8/227 (3%)
Query: 54  VLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNR-SAVRAVCLAVSGVNHPTDQQ 112
           +LA A    +NH  +G D   E I +++  A  K+G +    +R++ L++SG +     +
Sbjct: 29  ILAEADGLSTNHWLIGTDKCVERINEMVNRAKRKAGVDPLVPLRSLGLSLSGGDQEDAGR 88
Query: 113 RILNWLRDIFPGNVRLY-VHNDALAALASGTMGKLHGCVLIAGTGTIAYGFTEXXXXXXX 171
            ++  LRD FP     Y +  DA  ++A+ T     G VLI+GTG+              
Sbjct: 89  ILIEELRDRFPYLSESYLITTDAAGSIATATPDG--GVVLISGTGSNCRLINPDGSESGC 146
Query: 172 XXXXPILGDWGSGYGIAAQALTAVIRAYDG--RGPDTMLTSNILSTLELSSPDEL--IGW 227
                ++GD GS Y IA QA+  V  + D     P  +             PD L  +  
Sbjct: 147 GGWGHMMGDEGSAYWIAHQAVKIVFDSIDNLEAAPHDIGYVKQAMFHYFQVPDRLGILTH 206
Query: 228 TYVDPSWARIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVV 274
            Y D    R A     +   A+ GD ++  I + + E L   + AV+
Sbjct: 207 LYRDFDKCRFAGFCRKIAEGAQQGDPLSRYIFRKAGEMLGRHIVAVL 253

>pdb|2CH6|A Chain A, Crystal Structure Of Human N-Acetylglucosamine Kinase In Complex With Adp And Glucose Length = 344

Iteration: 1
 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 60/227 (26%), Positives = 97/227 (42%), Gaps = 8/227 (3%)
Query: 54  VLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNR-SAVRAVCLAVSGVNHPTDQQ 112
           +LA A    +NH  +G D   E I +++  A  K+G +    +R++ L++SG +     +
Sbjct: 26  ILAEADGLSTNHWLIGTDKCVERINEMVNRAKRKAGVDPLVPLRSLGLSLSGGDQEDAGR 85
Query: 113 RILNWLRDIFPGNVRLY-VHNDALAALASGTMGKLHGCVLIAGTGTIAYGFTEXXXXXXX 171
            ++  LRD FP     Y +  DA  ++A+ T     G VLI+GTG+              
Sbjct: 86  ILIEELRDRFPYLSESYLITTDAAGSIATATPDG--GVVLISGTGSNCRLINPDGSESGC 143
Query: 172 XXXXPILGDWGSGYGIAAQALTAVIRAYDG--RGPDTMLTSNILSTLELSSPDEL--IGW 227
                ++GD GS Y IA QA+  V  + D     P  +             PD L  +  
Sbjct: 144 GGWGHMMGDEGSAYWIAHQAVKIVFDSIDNLEAAPHDIGYVKQAMFHYFQVPDRLGILTH 203
Query: 228 TYVDPSWARIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVV 274
            Y D    R A     +   A+ GD ++  I + + E L   + AV+
Sbjct: 204 LYRDFDKCRFAGFCRKIAEGAQQGDPLSRYIFRKAGEMLGRHIVAVL 250

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	319
2e2o_A	299	Hexokinase; acetate and sugar kinases, HSP70, acti	2e-59
2ch5_A	347	NAGK protein; transferase, N-acetylglucosamine, gl	4e-58
1zc6_A	305	Probable N-acetylglucosamine kinase; NESG, Q7NU07_	5e-53
1zbs_A	291	Hypothetical protein PG1100; alpha-beta protein.,	3e-38
1zxo_A	291	Conserved hypothetical protein Q8A1P1; NESG, BTR25	3e-29

>2e2o_A Hexokinase; acetate and sugar kinases, HSP70, actin superfamily, ribonuc fold, sugar kinase, glucose, phosphoryl transfer, transferase; HET: BGC; 1.65A {Sulfolobus tokodaii} PDB: 2e2n_A* 2e2p_A* 2e2q_A* Length = 299

 Score =  191 bits (487), Expect = 2e-59
 Identities = 67/256 (26%), Positives = 118/256 (46%), Gaps = 21/256 (8%)

Query: 23  VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMA 82
           +I+G+D G T T  +                 +   ++G  N+++VG   A E I++ + 
Sbjct: 3   IIVGVDAGGTKTKAVA---------YDCEGNFIGEGSSGPGNYHNVGLTRAIENIKEAVK 53

Query: 83  DALLKSGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGT 142
            A       +     V + V+G++   D +        I P   ++ + +D + AL + T
Sbjct: 54  IAA------KGEADVVGMGVAGLDSKFDWENFTPLASLIAP---KVIIQHDGVIALFAET 104

Query: 143 MGKLHGCVLIAGTGTIAYGFTEDGRDARAAGAGPILGDWGSGYGIAAQALTAVIRAYDGR 202
           +G+  G V+IAGTG++  G+       R  G G +L D GS Y +  +AL  V++  DG 
Sbjct: 105 LGE-PGVVVIAGTGSVVEGYN-GKEFLRVGGRGWLLSDDGSAYWVGRKALRKVLKMMDGL 162

Query: 203 GPDTMLTSNILSTLELSSPDELIGWTYVDPSW-ARIAALVPVVVSCAEAGDEVANKILQD 261
              T+L + +L T+ +   DEL+ W+Y        +A++   V   A  GD VA  IL+ 
Sbjct: 163 ENKTILYNKVLKTINVKDLDELVMWSYTSSCQIDLVASIAKAVDEAANEGDTVAMDILKQ 222

Query: 262 SVEELALSVKAVVQRL 277
             E LA     + +++
Sbjct: 223 GAELLASQAVYLARKI 238

>2ch5_A NAGK protein; transferase, N-acetylglucosamine, glcnac, sugar kinase, RIBO H fold, sugar kinase/HSP70/actin superfamily, domain rotati conformation; HET: NAG NDG; 1.9A {Homo sapiens} SCOP: c.55.1.5 c.55.1.5 PDB: 2ch6_A* Length = 347

 Score =  189 bits (482), Expect = 4e-58
 Identities = 63/267 (23%), Positives = 114/267 (42%), Gaps = 17/267 (6%)

Query: 22  EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVM 81
            +  G++GG T +  +          + +   +LA A    +NH  +G D   E I +++
Sbjct: 6   AIYGGVEGGGTRSEVLL---------VSEDGKILAEADGLSTNHWLIGTDKCVERINEMV 56

Query: 82  ADALLKSGSNRS-AVRAVCLAVSGVNHPTDQQRILNWLRDIFPG-NVRLYVHNDALAALA 139
             A  K+G +    +R++ L++SG +     + ++  LRD FP  +    +  DA  ++A
Sbjct: 57  NRAKRKAGVDPLVPLRSLGLSLSGGDQEDAGRILIEELRDRFPYLSESYLITTDAAGSIA 116

Query: 140 SGTMGKLHGCVLIAGTGTIAYGFTEDGRDARAAGAGPILGDWGSGYGIAAQALTAVIRAY 199
           + T     G VLI+GTG+       DG ++   G G ++GD GS Y IA QA+  V  + 
Sbjct: 117 TATPD--GGVVLISGTGSNCRLINPDGSESGCGGWGHMMGDEGSAYWIAHQAVKIVFDSI 174

Query: 200 DGRGPDTMLTS----NILSTLELSSPDELIGWTYVDPSWARIAALVPVVVSCAEAGDEVA 255
           D               +    ++     ++   Y D    R A     +   A+ GD ++
Sbjct: 175 DNLEAAPHDIGYVKQAMFHYFQVPDRLGILTHLYRDFDKCRFAGFCRKIAEGAQQGDPLS 234

Query: 256 NKILQDSVEELALSVKAVVQRLSLSGE 282
             I + + E L   + AV+  +     
Sbjct: 235 RYIFRKAGEMLGRHIVAVLPEIDPVLF 261

>1zc6_A Probable N-acetylglucosamine kinase; NESG, Q7NU07_chrvo, CVR23, struc genomics, PSI, protein structure initiative; 2.20A {Chromobacterium violaceum} SCOP: c.55.1.5 c.55.1.5 Length = 305

 Score =  175 bits (445), Expect = 5e-53
 Identities = 64/264 (24%), Positives = 104/264 (39%), Gaps = 24/264 (9%)

Query: 24  ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMAD 83
           ++G+DGG T T                    LA A  G S   S G   + + +   +  
Sbjct: 13  LIGVDGGGTGTRIRL---------HASDGTPLAMAEGGASAL-SQGIAKSWQAVLSTLEA 62

Query: 84  ALLKSGSNRSAVRA--VCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASG 141
           A  ++G   +   A  + L +SGV++        +      PG  RL +  D    L   
Sbjct: 63  AFQQAGLPAAPASACAIGLGLSGVHNRQWAGEFESQ----APGFARLSLATDGYTTLLGA 118

Query: 142 TMGKLHGCVLIAGTGTIAYGFTEDGRDARAAGAGPILGDWGSGYGIAAQALTAVIRAYDG 201
             G+  G ++  GTG+I      DG    A G G   GD  SG  +  +A      A DG
Sbjct: 119 HGGQ-PGIIVALGTGSIGEALYPDGSHREAGGWGYPSGDEASGAWLGQRAAQLTQMALDG 177

Query: 202 RGPDTMLTSNILSTLELSSPDELIGWTYVDPSWARIAALVPVVVSCAEAGDEVANKILQD 261
           R   + LT  +L  +       ++ W     + A+ A L P+V+S A   D  A+ +L+ 
Sbjct: 178 RHSHSPLTRAVLDFVGG-DWQAMMAWNG-RATPAQFARLAPLVLSAAR-VDPEADALLRQ 234

Query: 262 SVEELALSVKAVVQ----RLSLSG 281
           + E+     +A+       ++L G
Sbjct: 235 AGEDAWAIARALDPQDELPVALCG 258

>1zbs_A Hypothetical protein PG1100; alpha-beta protein., structural genomics, PSI, protein struc initiative; 2.30A {Porphyromonas gingivalis} SCOP: c.55.1.5 c.55.1.5 Length = 291

 Score =  136 bits (343), Expect = 3e-38
 Identities = 49/243 (20%), Positives = 78/243 (32%), Gaps = 21/243 (8%)

Query: 24  ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMAD 83
           IL  D G+T T             +      L R      N      +     +   +  
Sbjct: 2   ILIGDSGSTKTDWC----------IAKEGKSLGRFQTSGINPFQQDRNEIDTALRSEVLP 51

Query: 84  ALLKSGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTM 143
           A+   G   S++RAV    +G   P     +   L  + P   R+ V  D L A      
Sbjct: 52  AI---GQKASSIRAVYFYGAGCT-PAKAPMLNEALDSMLPHCDRIEVAGDMLGAAR-ALC 106

Query: 144 GKLHGCVLIAGTGTIAYGFTEDGRDARAAGAGPILGDWGSGYGIAAQALTAVIRAYDGRG 203
           G   G   I GTG+ +  F      A  +  G ILGD GSG  +    + ++++      
Sbjct: 107 GDSEGIACILGTGSNSCLFDGREIKANVSPLGYILGDEGSGAVLGRLFIGSLLKGQMP-- 164

Query: 204 PDTMLTSNILSTLELSSPDELIGWTYVDPSWARIAALVPVVVSCAEAGDEVANKILQDSV 263
               L    L    L+S D +            +A   P               ++Q+S 
Sbjct: 165 --EGLCEAFLQEYGLTSADIIESVYRKPFPNRFLAGFSP--FIAQHLDIPAVYSLVQNSF 220

Query: 264 EEL 266
           ++ 
Sbjct: 221 DDF 223

>1zxo_A Conserved hypothetical protein Q8A1P1; NESG, BTR25, structural genomics, PSI, protein structure initiative; 3.20A {Bacteroides thetaiotaomicron} SCOP: c.55.1.5 c.55.1.5 Length = 291

 Score =  112 bits (281), Expect = 3e-29
 Identities = 46/275 (16%), Positives = 86/275 (31%), Gaps = 30/275 (10%)

Query: 24  ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMAD 83
           IL  D G+T T    +              V+ R      N     E+  ++ +   +  
Sbjct: 2   ILIADSGSTKTDWCVV----------LNGAVIKRLGTKGINPFFQSEEEIQQKLTASLLP 51

Query: 84  ALLKSGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTM 143
            L           AV    +G         +   + D  P    +  ++D LAA      
Sbjct: 52  QL-----PEGKFNAVYFYGAGCTPEKAPV-LRRAIADSLPVIGNIKANSDMLAAAHGLCG 105

Query: 144 GKLHGCVLIAGTGTIAYGFTEDGRDARAAGAGPILGDWGSGYGIAAQALTAVIRAYDGRG 203
            K  G   I GTG+ +  +      +  +  G ILGD GSG  +    +  +++      
Sbjct: 106 QK-AGIACILGTGSNSCFYNGKEIVSNISPLGFILGDEGSGAVLGKLLVGDILKNQLP-- 162

Query: 204 PDTMLTSNILSTLELSSPDELIGWTYVDPSWARIAALVPVVVSCAEAGDEVANKILQDSV 263
               L    L   +L+ P+ +            +A+L P         +    +++ +S 
Sbjct: 163 --ATLKEEFLKQFDLTPPEIIDRVYRQPFPNRFLASLSP--FIAQHLEEPAIRQLVMNSF 218

Query: 264 EELALSVKAVVQ----RLSLSGEGV--TYTKILKE 292
                            +   G  +   Y +IL++
Sbjct: 219 IAFFRRNVMQYDYKQYPVHFIG-SIAYCYKEILQD 252

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	319
1zc6_A	305	Probable N-acetylglucosamine kinase; NESG, Q7NU07_	100.0
2ch5_A	347	NAGK protein; transferase, N-acetylglucosamine, gl	100.0
1zbs_A	291	Hypothetical protein PG1100; alpha-beta protein.,	100.0
2e2o_A	299	Hexokinase; acetate and sugar kinases, HSP70, acti	100.0
1zxo_A	291	Conserved hypothetical protein Q8A1P1; NESG, BTR25	100.0
2qm1_A	326	Glucokinase; alpha-beta structure, putative helix-	100.0
3vgl_A	321	Glucokinase; ROK family, transferase; HET: BGC ANP	100.0
1z05_A	429	Transcriptional regulator, ROK family; structural	100.0
3r8e_A	321	Hypothetical sugar kinase; ribonuclease H-like mot	100.0
4db3_A	327	Glcnac kinase, N-acetyl-D-glucosamine kinase; stru	100.0
2hoe_A	380	N-acetylglucosamine kinase; TM1224, structural gen	100.0
3vov_A	302	Glucokinase, hexokinase; ROK, sugar kinase, transf	100.0
1z6r_A	406	MLC protein; transcriptional repressor, ROK family	100.0
4htl_A	297	Beta-glucoside kinase; structural genomics, sugar	100.0
2ap1_A	327	Putative regulator protein; zinc binding protein,	100.0
3htv_A	310	D-allose kinase, allokinase; NP_418508.1, structur	100.0
2yhw_A	343	Bifunctional UDP-N-acetylglucosamine 2-epimerase/N	100.0
2aa4_A	289	Mannac kinase, putative N-acetylmannosamine kinase	100.0
2gup_A	292	ROK family protein; sugar kinase, streptococcus pn	99.98
3mcp_A	366	Glucokinase; structural genomics, joint center for	99.97
3epq_A	302	Putative fructokinase; SCRK, ADP binding, PSI2, MC	99.97
1sz2_A	332	Glucokinase, glucose kinase; ATP-dependent, glucos	99.97
2q2r_A	373	Glucokinase 1, putative; ATPase hexose kinase fami	99.96
1saz_A	381	Probable butyrate kinase 2; askha (acetate and sug	99.95
1woq_A	267	Inorganic polyphosphate/ATP-glucomannokinase; tran	99.94
3lm2_A	226	Putative kinase; structural genomics, joint center	99.94
1bdg_A	451	Hexokinase; phosphotransferase; HET: GLC; 2.60A {S	99.89
2yhx_A	457	Hexokinase B; transferase(phosphoryl,alcohol accep	99.89
1cza_N	917	Hexokinase type I; structurally homologous domains	99.88
1cza_N	917	Hexokinase type I; structurally homologous domains	99.77
3o8m_A	485	Hexokinase; rnaseh-like fold, glycolysis, glucose	99.53
3hm8_A	445	Hexokinase-3; glucose, glucose-6-phosphate, non-pr	98.95
1hux_A	270	Activator of (R)-2-hydroxyglutaryl-COA dehydratase	98.79
3f9m_A	470	Glucokinase; hexokinase IV, ATP-binding, diabetes	98.74
3ifr_A	508	Carbohydrate kinase, FGGY; xylulose kinase, SGX, s	98.65
3g25_A	501	Glycerol kinase; IDP00743, ATP-binding, glycerol m	98.58
4e1j_A	520	Glycerol kinase; structural genomics, PSI-biology,	98.58
2zf5_O	497	Glycerol kinase; hyperthermophilic archaeon, ATP-b	98.52
4ehu_A	276	Activator of 2-hydroxyisocaproyl-COA dehydratase;	98.46
2w40_A	503	Glycerol kinase, putative; closed conformation, ma	98.44
2p3r_A	510	Glycerol kinase; glycerol metabolism, allosteric r	98.43
4ijn_A	398	Acetate kinase, acetokinase; proprionate kinase, A	98.41
3bex_A	249	Type III pantothenate kinase; actin-like fold, ATP	98.41
3h3n_X	506	Glycerol kinase; ATP-binding, glycerol metabolism,	98.4
2dpn_A	495	Glycerol kinase; thermus thermophilus HB8, structu	98.4
3hz6_A	511	Xylulokinase; xylulose, structural genomic, chromo	98.35
2d4w_A	504	Glycerol kinase; alpha and beta protein, ribonucle	98.33
3l0q_A	554	Xylulose kinase; xlylulose kinase, SGX, PSI, struc	98.29
3djc_A	266	Type III pantothenate kinase; structural genomics,	98.25
3ezw_A	526	Glycerol kinase; glycerol metabolism, allosteric r	98.25
3h6e_A	482	Carbohydrate kinase, FGGY; novosphingobium aromati	98.16
2itm_A	484	Xylulose kinase, xylulokinase; ATPase, FGGY kinase	98.13
3ll3_A	504	Gluconate kinase; xylulose kinase, nysgx, ATP, ADP	98.13
3h1q_A	272	Ethanolamine utilization protein EUTJ; ethanolamin	98.09
3jvp_A	572	Ribulokinase; PSI-II, NYSGXRC, ribulose kinase, su	98.05
3r9p_A	391	ACKA; ssgcid, seattle structural genomics center f	97.9
3i8b_A	515	Xylulose kinase; strain ATCC 15703 / DSM 20083, 11	97.9
2uyt_A	489	Rhamnulokinase; rhamnose degradation, IN-LINE phos	97.71
2h3g_X	268	Biosynthetic protein; pantothenate kinase, anthrax	97.63
4bc3_A	538	Xylulose kinase; transferase, glucuronate xyluloki	97.59
2ivn_A	330	O-sialoglycoprotein endopeptidase; UP1 keops compl	97.17
3en9_A	540	Glycoprotease, O-sialoglycoprotein endopeptidase/p	96.3
3eno_A	334	Putative O-sialoglycoprotein endopeptidase; hydrol	95.92
3sk3_A	415	Acetate kinase, acetokinase; actin-like ATPase dom	95.83
2f9w_A	271	Pantothenate kinase; COAA, transferase; HET: PAU;	95.66
1nu0_A	138	Hypothetical protein YQGF; structural genomics, st	95.54
2ews_A	287	Pantothenate kinase; PANK, structural genomics, st	95.29
3zyy_X	631	Iron-sulfur cluster binding protein; iron-sulfur-b	94.9
1vhx_A	150	Putative holliday junction resolvase; structural g	94.55
1iv0_A	98	Hypothetical protein; rnaseh-like, YQGF, structura	94.52
1g99_A	408	Acetate kinase; alpha/beta, askha (acetate and sug	94.47
4a2a_A	419	Cell division protein FTSA, putative; cell cycle,	94.47
2iir_A	403	Acetate kinase; transferase; 3.30A {Thermotoga mar	94.34
2e1z_A	415	Propionate kinase; TDCD, native, acetate kinase, n	94.28
3khy_A	384	Propionate kinase; csgid, IDP01739, ATP-binding, n	93.98
4h0o_A	404	Acetate kinase; askha (acetate and S kinase, HSC70	93.89
3cet_A	334	Conserved archaeal protein; Q6M145, MRR63, NESG, X	93.26
1t6c_A	315	Exopolyphosphatase; alpha/beta protein, actin-like	92.73
2ych_A	377	Competence protein PILM; cell cycle, type IV pilus	92.38
3bzc_A	785	TEX; helix-turn-helix, helix-hairpin-helix, S1 dom	92.35
2fxu_A	375	Alpha-actin-1, actin, alpha skeletal muscle; actin	92.27
3r6m_A	213	YEAZ, resuscitation promoting factor; actin/HSP70	92.15
2a6a_A	218	Hypothetical protein TM0874; glycoprotein endopept	90.95
1jce_A	344	ROD shape-determining protein MREB; MBL, actin, HS	90.37
1k8k_A	418	ARP3, actin-like protein 3, actin-2; beta-propelle	90.37
4gni_A	409	Putative heat shock protein; HSP70-type ATPase, AT	88.91
3mdq_A	315	Exopolyphosphatase; structural genomics, joint cen	88.85
3t69_A	330	Putative 2-dehydro-3-deoxygalactonokinase; structu	88.15
1nbw_A	607	Glycerol dehydratase reactivase alpha subunit; mol	87.64
1u6z_A	513	Exopolyphosphatase; alpha/beta protein, askha (ace	87.48
2d0o_A	610	DIOL dehydratase-reactivating factor large subunit	87.12
3psf_A	1030	Transcription elongation factor SPT6; nucleus; 2.5	86.61
2gel_A	231	Putative GRAM negative resuscitation promoting FA;	86.06
3qfu_A	394	78 kDa glucose-regulated protein homolog; HSP70, K	85.66
3psi_A	1219	Transcription elongation factor SPT6; nucleus; 3.3	85.19
3cer_A	343	Possible exopolyphosphatase-like protein; NESG, BL	84.84
3i33_A	404	Heat shock-related 70 kDa protein 2; protein-ADP c	82.83
2v7y_A	509	Chaperone protein DNAK; HSP70, heat shock protein,	81.03
4b9q_A	605	Chaperone protein DNAK; HET: ATP; 2.40A {Escherich	80.41

>1zc6_A Probable N-acetylglucosamine kinase; NESG, Q7NU07_chrvo, CVR23, struc genomics, PSI, protein structure initiative; 2.20A {Chromobacterium violaceum} SCOP: c.55.1.5 c.55.1.5

Probab=100.00  E-value=5.6e-42  Score=317.38  Aligned_cols=261  Identities=24%  Similarity=0.269  Sum_probs=218.3

Q ss_pred             cEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCcccc--ceEE
Q 020972           22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAV--RAVC   99 (319)
Q Consensus        22 ~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i--~~Ig   99 (319)
                      .|+||||+|||+++++++|.         +|+++.+.+.++.+.. .+++++++.+.+.+++++++.+.++++|  .+||
T Consensus        11 ~~~lGiDiGgT~i~~~l~d~---------~G~il~~~~~~~~~~~-~~~~~~~~~l~~~i~~~l~~~~~~~~~i~~~~ig   80 (305)
T 1zc6_A           11 RYLIGVDGGGTGTRIRLHAS---------DGTPLAMAEGGASALS-QGIAKSWQAVLSTLEAAFQQAGLPAAPASACAIG   80 (305)
T ss_dssp             CEEEEEEECSSCEEEEEEET---------TCCEEEEEEESCCCGG-GCHHHHHHHHHHHHHHHHHHTTCCCCCGGGEEEE
T ss_pred             CEEEEEEcCccceEEEEEcC---------CCCEEEEEeCCCCCcc-cCHHHHHHHHHHHHHHHHHhcCCChhhhccceEE
Confidence            49999999999999999999         9999998876554443 5789999999999999999887766676  7999


Q ss_pred             EeecCCCCchhHHHHHHHHHhhCC-CCceEEEeCcHHHHHHhhcCCCCCeEEEEECccceeEeEecCCcEEeeCCCCCcc
Q 020972          100 LAVSGVNHPTDQQRILNWLRDIFP-GNVRLYVHNDALAALASGTMGKLHGCVLIAGTGTIAYGFTEDGRDARAAGAGPIL  178 (319)
Q Consensus       100 ig~pG~~~~~~~~~l~~~L~~~~~-~~~pv~v~NDa~aa~~g~~~g~~~~v~v~~GTGigg~gii~dG~~~raGg~Ghl~  178 (319)
                      ||+||+++++.+..    |++.|+ + .||+|+||+|++++++. +.++++++++|||++|++++.||++.++|||||+.
T Consensus        81 ig~pG~v~~~~~~~----l~~~~~~~-~pv~v~NDa~aaa~ge~-~~~~~v~v~~GTGigg~~i~~~G~~~~aGe~Gh~~  154 (305)
T 1zc6_A           81 LGLSGVHNRQWAGE----FESQAPGF-ARLSLATDGYTTLLGAH-GGQPGIIVALGTGSIGEALYPDGSHREAGGWGYPS  154 (305)
T ss_dssp             EEESCCCTTSHHHH----HHHTCCCC-SEEEEECHHHHHHHHHT-TTSSEEEEEESSSEEEEEECTTSCEEEESCCCTTT
T ss_pred             EEecCCCchHHHHH----HHHhCCCC-ceEEEECCHHHHHHhhc-CCCCeEEEEecCCeEEEEEeCCCcEEEecCccccc
Confidence            99999998776543    666773 3 89999999999999874 45799999999999776665699999999999999


Q ss_pred             CCcCChHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHcCCCChhhHHHHhccCCChHHHhchhHHHHHHHHcCCHHHHHH
Q 020972          179 GDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWARIAALVPVVVSCAEAGDEVANKI  258 (319)
Q Consensus       179 gd~Gsa~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~v~~~A~~GD~~A~~i  258 (319)
                      +|+|+++||||+++....+..|++.+.|.+.+++++.++ .+...++++.+.. ....++.+++.|+++| +||+.|+++
T Consensus       155 ~d~g~~~~iG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~-~~~~~~~~~~~v~~~a-~GD~~A~~i  231 (305)
T 1zc6_A          155 GDEASGAWLGQRAAQLTQMALDGRHSHSPLTRAVLDFVG-GDWQAMMAWNGRA-TPAQFARLAPLVLSAA-RVDPEADAL  231 (305)
T ss_dssp             SCTTSHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHT-SSHHHHHHHHHTC-CHHHHHTTHHHHHHHT-TTCHHHHHH
T ss_pred             CCCchHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHC-cCHHHHHHHHhcc-CHHHHHHHHHHHHHHc-CCCHHHHHH
Confidence            999999999999999888888998888999999999886 3567777665532 2234445578899999 999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcccCCCcchhhcccccccEEEEcchhhhcHHHHHHHHhh
Q 020972          259 LQDSVEELALSVKAVVQRLSLSGEGVTYTKILKEKVPLLMENILFLLSWLVVFLKLIE  316 (319)
Q Consensus       259 l~~a~~~Lg~~la~li~~l~~~~~~~~~~~~~~~~~~ivl~Gg~~~~~~~~~~~~~~~  316 (319)
                      +++++++|+.+++++++. ||              ++|||+||++....+.|.+++.+
T Consensus       232 ~~~~~~~L~~~l~~l~~~-~p--------------~~VvlgGgv~~~~~~~l~~~l~~  274 (305)
T 1zc6_A          232 LRQAGEDAWAIARALDPQ-DE--------------LPVALCGGLGQALRDWLPPGFRQ  274 (305)
T ss_dssp             HHHHHHHHHHHHHHHCTT-CC--------------SCEEEESHHHHHTGGGSCHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcC-CC--------------CeEEEECCchHhHHHHHHHHHHh
Confidence            999999999999999987 77              58999999984345556555544

>2ch5_A NAGK protein; transferase, N-acetylglucosamine, glcnac, sugar kinase, RIBO H fold, sugar kinase/HSP70/actin superfamily, domain rotati conformation; HET: NAG NDG; 1.9A {Homo sapiens} SCOP: c.55.1.5 c.55.1.5 PDB: 2ch6_A*

Probab=100.00  E-value=2e-39  Score=304.90  Aligned_cols=276  Identities=24%  Similarity=0.346  Sum_probs=224.7

Q ss_pred             cEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCcc-ccceEEE
Q 020972           22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRS-AVRAVCL  100 (319)
Q Consensus        22 ~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~-~i~~Igi  100 (319)
                      .|+||||+|+|+++++++|.         +|+++.+.+.++.+..+.+++++++.+.+.+++++++.+.++. ++.+|||
T Consensus         6 ~~~lgiDiGgt~~~~~l~d~---------~g~i~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~i~gigi   76 (347)
T 2ch5_A            6 AIYGGVEGGGTRSEVLLVSE---------DGKILAEADGLSTNHWLIGTDKCVERINEMVNRAKRKAGVDPLVPLRSLGL   76 (347)
T ss_dssp             CEEEEEEECTTCEEEEEEET---------TSCEEEEEEECCCCHHHHCHHHHHHHHHHHHHHHHHHHTCCTTCCBSEEEE
T ss_pred             eEEEEEEcCccceEEEEEeC---------CCCEEEEEeCCCCCcccCCHHHHHHHHHHHHHHHHHhcCCCcccceeEEEE
Confidence            49999999999999999999         9999998887544432247889999999999999988877666 7999999


Q ss_pred             eecCCCCchhHHHHHHHHHhhCC--CCceEEEeCcHHHHHHhhcCCCCCeEEEEECccceeEeEecCCcEEeeCCCCCcc
Q 020972          101 AVSGVNHPTDQQRILNWLRDIFP--GNVRLYVHNDALAALASGTMGKLHGCVLIAGTGTIAYGFTEDGRDARAAGAGPIL  178 (319)
Q Consensus       101 g~pG~~~~~~~~~l~~~L~~~~~--~~~pv~v~NDa~aa~~g~~~g~~~~v~v~~GTGigg~gii~dG~~~raGg~Ghl~  178 (319)
                      |+||+++++.+.+|++.|++.|+  . .||+|+||+|+++++. .+ ++++++++|||++++.+..+|+..++|+|||+.
T Consensus        77 ~~pG~vd~~~~~~l~~~l~~~~~~~~-~pv~v~NDa~aaa~a~-~~-~~~v~v~~GTGig~~~v~~~G~~c~cG~~G~l~  153 (347)
T 2ch5_A           77 SLSGGDQEDAGRILIEELRDRFPYLS-ESYLITTDAAGSIATA-TP-DGGVVLISGTGSNCRLINPDGSESGCGGWGHMM  153 (347)
T ss_dssp             EETTTTCHHHHHHHHHHHHHHCTTSB-SCEEEEEHHHHHHHHH-CS-SCEEEEEESSSEEEEEECTTSCEEEEECCCTTT
T ss_pred             eccCCCchHHHHHHHHHHHHhcCCCC-ceEEEECcHHHHHHhh-CC-CCcEEEEEcCCceeEEEcCCCCEEecCCcCccc
Confidence            99999998888999999999985  2 7999999999999984 44 689999999999776555689999999999999


Q ss_pred             CCcCChHHHHHHHHHHHHHHhcCCCC----CchhHHHHHHHcCCCChhhHHHHhccCCChHHHhchhHHHHHHHHcCCHH
Q 020972          179 GDWGSGYGIAAQALTAVIRAYDGRGP----DTMLTSNILSTLELSSPDELIGWTYVDPSWARIAALVPVVVSCAEAGDEV  254 (319)
Q Consensus       179 gd~Gsa~~iG~~~~~~~~~~~dg~~~----~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~v~~~A~~GD~~  254 (319)
                      +|++|++++++.++....+..|++.+    .+.+.+.+.+.+++.+..+++.+++.......++.+++.|+++|++||+.
T Consensus       154 ~de~s~~~i~~~~~~~~~~~~dg~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~a~~gD~~  233 (347)
T 2ch5_A          154 GDEGSAYWIAHQAVKIVFDSIDNLEAAPHDIGYVKQAMFHYFQVPDRLGILTHLYRDFDKCRFAGFCRKIAEGAQQGDPL  233 (347)
T ss_dssp             CCTTSHHHHHHHHHHHHHHHHHTSSCCSSCCHHHHHHHHHHHTCSSHHHHHTTTTTTCCHHHHHTTHHHHHHHHHTTCHH
T ss_pred             CCCccHHHHHHHHHHHHHHHHhCCCCCCCCccHHHHHHHHHhCCCCHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence            99999999999999877777777665    25677777777765555556655543222334444578999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhcccccccEEEEcchhhhcHHHHHHHHhh
Q 020972          255 ANKILQDSVEELALSVKAVVQRLSLSGEGVTYTKILKEKVPLLMENILFLLSWLVVFLKLIE  316 (319)
Q Consensus       255 A~~il~~a~~~Lg~~la~li~~l~~~~~~~~~~~~~~~~~~ivl~Gg~~~~~~~~~~~~~~~  316 (319)
                      |++++++++++|+.+++++++.+||  +...    .+++..|||+||++ ..++.|++++.+
T Consensus       234 a~~il~~~~~~La~~i~~l~~~~~p--~~~~----~~~~~~IvlgGgv~-~~~~~~~~~~~~  288 (347)
T 2ch5_A          234 SRYIFRKAGEMLGRHIVAVLPEIDP--VLFQ----GKIGLPILCVGSVW-KSWELLKEGFLL  288 (347)
T ss_dssp             HHHHHHHHHHHHHHHHHHHGGGSCG--GGGC----STTCEEEEEESGGG-GGHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcc--cccc----cCCCceEEEECCcc-cCcHHHHHHHHH
Confidence            9999999999999999999999998  1000    00012799999998 778888887765

>1zbs_A Hypothetical protein PG1100; alpha-beta protein., structural genomics, PSI, protein struc initiative; 2.30A {Porphyromonas gingivalis} SCOP: c.55.1.5 c.55.1.5

Probab=100.00  E-value=1.2e-39  Score=300.03  Aligned_cols=256  Identities=21%  Similarity=0.239  Sum_probs=202.1

Q ss_pred             EEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceEEEee
Q 020972           23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV  102 (319)
Q Consensus        23 ~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Igig~  102 (319)
                      |+||||+|||||+++++|          +|+++.+.+.+++++...+++.++++|.+.+++++   +.+..++.+||||+
T Consensus         1 ~~lgiDiGGT~~~~~l~d----------~g~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~---~~~~~~i~~igig~   67 (291)
T 1zbs_A            1 MILIGDSGSTKTDWCIAK----------EGKSLGRFQTSGINPFQQDRNEIDTALRSEVLPAI---GQKASSIRAVYFYG   67 (291)
T ss_dssp             CEEEEEECSSEEEEEEEE----------TTEEEEEEEEECCCTTTSCHHHHHHHHTTTTHHHH---TTSTTTCCEEEEEE
T ss_pred             CEEEEEeCccceEEEEEe----------CCeEEEEEECCCCCcccCCHHHHHHHHHHHHHHHh---CCCcccccEEEEEC
Confidence            479999999999999998          38899888776655532478889999998888754   22335788999999


Q ss_pred             cCCCCchhHHHHHHHHHhhCCCCceEEEeCcHHHHHHhhcCCCCCeEEEEECccceeEeEecCCcEEeeCCCCCccCCcC
Q 020972          103 SGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTMGKLHGCVLIAGTGTIAYGFTEDGRDARAAGAGPILGDWG  182 (319)
Q Consensus       103 pG~~~~~~~~~l~~~L~~~~~~~~pv~v~NDa~aa~~g~~~g~~~~v~v~~GTGigg~gii~dG~~~raGg~Ghl~gd~G  182 (319)
                      ||++ ++...++++.|+++|+...||.|+||+|+|++++. +.++++++++|||+++++++.||+++++|||||+++|+|
T Consensus        68 pG~~-~~~~~~l~~~l~~~~~~~~pv~v~NDa~~aa~ge~-g~~~~v~v~~GTGigg~~i~~~G~~~~aGe~G~~~~d~g  145 (291)
T 1zbs_A           68 AGCT-PAKAPMLNEALDSMLPHCDRIEVAGDMLGAARALC-GDSEGIACILGTGSNSCLFDGREIKANVSPLGYILGDEG  145 (291)
T ss_dssp             TTCC-TTTHHHHHHHHHHHSTTCSEEEEECHHHHHHHHHT-TTSCEEEEEESSSEEEEEECSSSEEEECCCCHHHHCCTT
T ss_pred             CCCC-hHHHHHHHHHHHHhcCCCCcEEEeCcHHHHHHhhc-CCCCcEEEEecCChheEEECCCCcEEEeCCCccccCCCc
Confidence            9998 66667999999999971039999999999999885 678999999999997678888999999999999999999


Q ss_pred             ChHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHcCCCChhhHHHHhccCCC-hHHHhchhHHHHHHHHcCCHHHHHHHHH
Q 020972          183 SGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPS-WARIAALVPVVVSCAEAGDEVANKILQD  261 (319)
Q Consensus       183 sa~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~a~~~~~v~~~A~~GD~~A~~il~~  261 (319)
                      +++||||++++..++.   +. .+++.+.+++.++.. ..+++++.|.... +.+++++++.|++  ++||+.|++++++
T Consensus       146 ~~~~~G~~~~~~~~~~---~~-~~~l~~~~~~~~~~~-~~~l~~~~~~~~~~~~~ia~~a~~v~~--~~GD~~A~~i~~~  218 (291)
T 1zbs_A          146 SGAVLGRLFIGSLLKG---QM-PEGLCEAFLQEYGLT-SADIIESVYRKPFPNRFLAGFSPFIAQ--HLDIPAVYSLVQN  218 (291)
T ss_dssp             SHHHHHHHHHHHHHTT---CS-CTTHHHHHHHHTTCC-HHHHHHHHHHSSCHHHHHHTTHHHHHT--TTTSHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHc---cC-CChHHHHHHHHhCcC-HHHHHHHHHcCCCCHHHHHHhhHHHHH--hCCCHHHHHHHHH
Confidence            9999999998754432   22 678888888888753 5556665543222 2456667888988  8899999999999


Q ss_pred             HHHHHHHHHHHHHHHh-cccCCCcchhhcccccccEEEEcchhhhcHHHHHHHHhh
Q 020972          262 SVEELALSVKAVVQRL-SLSGEGVTYTKILKEKVPLLMENILFLLSWLVVFLKLIE  316 (319)
Q Consensus       262 a~~~Lg~~la~li~~l-~~~~~~~~~~~~~~~~~~ivl~Gg~~~~~~~~~~~~~~~  316 (319)
                      ++++|+..+  .++.+ ||              ++|||+||++....+.+...+.+
T Consensus       219 ~~~~La~~i--~~~~~~~p--------------~~vvlgGGv~~~~~~~l~~~l~~  258 (291)
T 1zbs_A          219 SFDDFLVRN--VLRYNRPD--------------LPLHFIGSVAFHYREVLSSVIKK  258 (291)
T ss_dssp             HHHHHHHHH--TGGGCCTT--------------SCEEEESHHHHHTHHHHHHHHHH
T ss_pred             HHHHHHHHH--hcccCCCC--------------ceEEEECchHHhhHHHHHHHHHH
Confidence            999999999  34444 54              68999999994323555555444

>2e2o_A Hexokinase; acetate and sugar kinases, HSP70, actin superfamily, ribonuc fold, sugar kinase, glucose, phosphoryl transfer, transferase; HET: BGC; 1.65A {Sulfolobus tokodaii} PDB: 2e2n_A* 2e2p_A* 2e2q_A*

Probab=100.00  E-value=7.8e-39  Score=295.15  Aligned_cols=259  Identities=25%  Similarity=0.371  Sum_probs=217.4

Q ss_pred             CCcEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceEE
Q 020972           20 GREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVC   99 (319)
Q Consensus        20 m~~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Ig   99 (319)
                      || |+||||+|+|+++++++|.         +|+++.+.+.++.+....+++++++.+.+.+++++++.      +.+||
T Consensus         1 mM-~~lgiDiGgt~~~~~l~d~---------~g~i~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~------~~~ig   64 (299)
T 2e2o_A            1 MM-IIVGVDAGGTKTKAVAYDC---------EGNFIGEGSSGPGNYHNVGLTRAIENIKEAVKIAAKGE------ADVVG   64 (299)
T ss_dssp             CC-CEEEEEECSSCEEEEEECT---------TSCEEEEEEESCCCHHHHCHHHHHHHHHHHHHHHHTSC------CSEEE
T ss_pred             Ce-EEEEEEeCCCcEEEEEEcC---------CCCEEEEEeCCCCCcccCCHHHHHHHHHHHHHHHHhcC------CCEEE
Confidence            44 8999999999999999999         99999988876544212478899999999998887532      67999


Q ss_pred             EeecCCCCch-hHHHHHHHHHhhCCCCceEEEeCcHHHHHHhhcCCCCCeEEEEECccceeEeEecCCcEEeeCCCCCcc
Q 020972          100 LAVSGVNHPT-DQQRILNWLRDIFPGNVRLYVHNDALAALASGTMGKLHGCVLIAGTGTIAYGFTEDGRDARAAGAGPIL  178 (319)
Q Consensus       100 ig~pG~~~~~-~~~~l~~~L~~~~~~~~pv~v~NDa~aa~~g~~~g~~~~v~v~~GTGigg~gii~dG~~~raGg~Ghl~  178 (319)
                      ||+||+ +.+ ...+|.+.|++ |+  .||+++||+|++++++.+ .++++|+++|||++..|. ..|+..++|||||+.
T Consensus        65 i~~~G~-~~~~~~~~l~~~l~~-~~--~pv~v~ND~~aaa~~e~~-~~~~v~l~~GTG~i~~g~-~~G~~~~aGE~Gh~~  138 (299)
T 2e2o_A           65 MGVAGL-DSKFDWENFTPLASL-IA--PKVIIQHDGVIALFAETL-GEPGVVVIAGTGSVVEGY-NGKEFLRVGGRGWLL  138 (299)
T ss_dssp             EEETTC-CSHHHHHHHHHHHTT-SS--SEEEEEEHHHHHHHHHHT-TSCEEEEEESSSEEEEEE-CSSCEEEEECSCTTT
T ss_pred             EEcCCC-CchhHHHHHHHHHHh-CC--CCEEEeCcHHHHHhhccC-CCCeEEEEecCCEEEEEE-cCCeEEecCCcCCCc
Confidence            999999 543 44789999999 97  899999999999999875 578999999999666676 588899999999999


Q ss_pred             CCcCChHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHcCCCChhhHHHHhccC-CChHHHhchhHHHHHHHHcCCHHHHH
Q 020972          179 GDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVD-PSWARIAALVPVVVSCAEAGDEVANK  257 (319)
Q Consensus       179 gd~Gsa~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~a~~~~~v~~~A~~GD~~A~~  257 (319)
                      +++|++++||+++++...++.|++.+.+.+.+.+.+.++..+...+.++.+.. ..+.+++..++.|++++++||+.|++
T Consensus       139 ~~~g~~c~cG~~gl~~~~~~le~~~s~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~gd~~a~~  218 (299)
T 2e2o_A          139 SDDGSAYWVGRKALRKVLKMMDGLENKTILYNKVLKTINVKDLDELVMWSYTSSCQIDLVASIAKAVDEAANEGDTVAMD  218 (299)
T ss_dssp             CCTTSHHHHHHHHHHHHHHHHTTSSCCCHHHHHHHHHTTCCSHHHHHHHHHHHTTCHHHHHTTHHHHHHHHHTTCHHHHH
T ss_pred             CCCccHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhCCCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHH
Confidence            99999999999999988888999999999998888887765556666655421 11233344678899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcccCCCcchhhcccccccEEEEcchhhhcHHHHHHHHhh
Q 020972          258 ILQDSVEELALSVKAVVQRLSLSGEGVTYTKILKEKVPLLMENILFLLSWLVVFLKLIE  316 (319)
Q Consensus       258 il~~a~~~Lg~~la~li~~l~~~~~~~~~~~~~~~~~~ivl~Gg~~~~~~~~~~~~~~~  316 (319)
                      ++++++++|+.+++++++.|||              +.|||+||++ .+ +.|++++.+
T Consensus       219 il~~~~~~La~~i~~l~~~l~p--------------~~IvlgGgv~-~~-~~~~~~l~~  261 (299)
T 2e2o_A          219 ILKQGAELLASQAVYLARKIGT--------------NKVYLKGGMF-RS-NIYHKFFTL  261 (299)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTC--------------SEEEEESGGG-GS-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcCC--------------CEEEEECCcc-Cc-HHHHHHHHH
Confidence            9999999999999999999998              4799999999 56 888888765

>1zxo_A Conserved hypothetical protein Q8A1P1; NESG, BTR25, structural genomics, PSI, protein structure initiative; 3.20A {Bacteroides thetaiotaomicron} SCOP: c.55.1.5 c.55.1.5

Probab=100.00  E-value=4.3e-40  Score=302.96  Aligned_cols=248  Identities=21%  Similarity=0.248  Sum_probs=185.9

Q ss_pred             EEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceEEEee
Q 020972           23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV  102 (319)
Q Consensus        23 ~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Igig~  102 (319)
                      |+||||+|||||+++++|          +|+++.+.+.+++|+...+++.+++.|.+++++++.     ..++.+||+|+
T Consensus         1 ~~lgiDiGGT~i~~~l~d----------~g~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~-----~~~i~~igig~   65 (291)
T 1zxo_A            1 MILIADSGSTKTDWCVVL----------NGAVIKRLGTKGINPFFQSEEEIQQKLTASLLPQLP-----EGKFNAVYFYG   65 (291)
T ss_dssp             ---CEECCTTCEEEEEEC----------SSSEEEEEEECCCCTTTSCSTTTTTTTTC------------------CEEEC
T ss_pred             CEEEEEeccccEEEEEEc----------CCeEEEEEECCCCCcccCCHHHHHHHHHHHHHHhcC-----cccccEEEEEc
Confidence            479999999999999998          388998887766555323667778888888877652     23678999999


Q ss_pred             cCCCCchhHHHHHHHHHhhCCCCc--eEEEeCcHHHHHHhhcCCCCCeEEEEECccceeEeEecCCcEEeeCCCCCccCC
Q 020972          103 SGVNHPTDQQRILNWLRDIFPGNV--RLYVHNDALAALASGTMGKLHGCVLIAGTGTIAYGFTEDGRDARAAGAGPILGD  180 (319)
Q Consensus       103 pG~~~~~~~~~l~~~L~~~~~~~~--pv~v~NDa~aa~~g~~~g~~~~v~v~~GTGigg~gii~dG~~~raGg~Ghl~gd  180 (319)
                      ||++ ++...++++.|++.|+  .  ||.|+||+|+|++++. +.++++++++|||++|+|++.||++.++|||||+++|
T Consensus        66 pG~~-~~~~~~l~~~l~~~~~--~~~pv~v~NDa~~aalge~-g~~~~v~v~~GTGi~g~gi~~~G~~~~aGe~Gh~~~d  141 (291)
T 1zxo_A           66 AGCT-PEKAPVLRRAIADSLP--VIGNIKANSDMLAAAHGLC-GQKAGIACILGTGSNSCFYNGKEIVSNISPLGFILGD  141 (291)
T ss_dssp             TTCC-TTTTHHHHHHHHHHSC--CCSCCEEECSHHHHHHHTT-TTSCBEEEEESSSEEEEEECSSSEEEECCCCCTTTSC
T ss_pred             CCCC-HHHHHHHHHHHHHhcC--CCceEEEECcHHHHHHhhc-CCCCcEEEEeCCChheEEECCCCcEEEeCCCccccCC
Confidence            9998 6556799999999997  4  9999999999999885 6789999999999966689999999999999999999


Q ss_pred             cCChHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHcCCCChhhHHHHhccCC-ChHHHhchhHHHHHHHHcCCHHHHHHH
Q 020972          181 WGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDP-SWARIAALVPVVVSCAEAGDEVANKIL  259 (319)
Q Consensus       181 ~Gsa~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~a~~~~~v~~~A~~GD~~A~~il  259 (319)
                      +|+++|||+++++..+.   .+. .+++.+.+.+.++.. ..+++++.|... .+.+++.+++.|++  ++||+.|++++
T Consensus       142 ~g~~~~~G~~~~~~~~~---~~~-~~~l~~~~~~~~~~~-~~~l~~~~~~~~~~~~~ia~~a~~v~~--~~GD~~A~~i~  214 (291)
T 1zxo_A          142 EGSGAVLGKLLVGDILK---NQL-PATLKEEFLKQFDLT-PPEIIDRVYRQPFPNRFLASLSPFIAQ--HLEEPAIRQLV  214 (291)
T ss_dssp             CSSHHHHHHHHHHHGGG---TCS-CSHHHHHHHHHHTCC-HHHHGGGTTTSSCSTTTSSTTTHHHHT--TTTSTTTTHHH
T ss_pred             CchHHHHHHHHHHHHHH---ccC-CChHHHHHHHHhCCC-HHHHHHHHhcCCCCHHHHHHhhHHHHH--hCCCHHHHHHH
Confidence            99999999998865432   233 678888888877643 455555444321 11344556788888  88999999999


Q ss_pred             HHHHHHHHHHHHHHHHHh-cccCCCcchhhcccccccEEEEcchhhhcHHHHHHHHhh
Q 020972          260 QDSVEELALSVKAVVQRL-SLSGEGVTYTKILKEKVPLLMENILFLLSWLVVFLKLIE  316 (319)
Q Consensus       260 ~~a~~~Lg~~la~li~~l-~~~~~~~~~~~~~~~~~~ivl~Gg~~~~~~~~~~~~~~~  316 (319)
                      ++++++|+..+ . ++.+ ||              ++|||+||++ .+   |++++.|
T Consensus       215 ~~~~~~La~~i-~-~~~~~~p--------------~~vvlgGGv~-~~---l~~~l~~  252 (291)
T 1zxo_A          215 MNSFIAFFRRN-V-MQYDYKQ--------------YPVHFIGSIA-YC---YKEILQD  252 (291)
T ss_dssp             HHHHHHHHTTT-G-GGSCTTT--------------SCEEECSHHH-HH---THHHHHH
T ss_pred             HHHHHHHHHHH-h-cccCCCC--------------ceEEEECcHH-HH---HHHHHHH
Confidence            99999999999 3 4443 44              6999999998 44   6666654

>2qm1_A Glucokinase; alpha-beta structure, putative helix-turn-helix, structural PSI-2, protein structure initiative; HET: MSE; 2.02A {Enterococcus faecalis}

Probab=100.00  E-value=5.5e-38  Score=292.42  Aligned_cols=261  Identities=13%  Similarity=0.059  Sum_probs=198.6

Q ss_pred             ccCCCcEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccc
Q 020972           17 ESGGREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVR   96 (319)
Q Consensus        17 ~~~m~~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~   96 (319)
                      ++||+.|+||||+|+|+++++++|.         +|+++.+.+.+..+.  .+++++++.+.+.+++++++.+.+..++.
T Consensus         1 ~~~m~~~~lgiDiggt~~~~~l~d~---------~g~il~~~~~~~~~~--~~~~~~~~~l~~~i~~~~~~~~~~~~~i~   69 (326)
T 2qm1_A            1 SNAMDKKIIGIDLGGTTIKFAILTT---------DGVVQQKWSIETNIL--EDGKHIVPSIIESIRHRIDLYNMKKEDFV   69 (326)
T ss_dssp             CCGGGCEEEEEEECSSEEEEEEEET---------TCCEEEEEEEECCCT--TTTTTHHHHHHHHHHHHHHHTTCCGGGEE
T ss_pred             CCCcccEEEEEEECCCEEEEEEECC---------CCCEEEEEEEcCCCC--CCHHHHHHHHHHHHHHHHHHcCCCcccee
Confidence            3688889999999999999999999         999999887755332  46788999999999999998887777899


Q ss_pred             eEEEeecCCCCchh------------HH-HHHHHHHhhCCCCceEEEeCcHHHHHHhhc-----CCCCCeEEEEECccce
Q 020972           97 AVCLAVSGVNHPTD------------QQ-RILNWLRDIFPGNVRLYVHNDALAALASGT-----MGKLHGCVLIAGTGTI  158 (319)
Q Consensus        97 ~Igig~pG~~~~~~------------~~-~l~~~L~~~~~~~~pv~v~NDa~aa~~g~~-----~g~~~~v~v~~GTGig  158 (319)
                      +|||++||+++++.            .. +|++.|++.|+  .||+++||+|++++++.     .+.++++|+++|||+ 
T Consensus        70 ~igi~~pG~vd~~~g~v~~~~~l~w~~~~~l~~~l~~~~~--~pv~v~ND~~aaa~~e~~~g~~~~~~~~~~l~~GtGi-  146 (326)
T 2qm1_A           70 GIGMGTPGSVDIEKGTVVGAYNLNWTTVQPVKEQIESALG--IPFALDNDANVAALGERWKGAGENNPDVIFITLGTGV-  146 (326)
T ss_dssp             EEEEEESSEEETTTTEEECBGGGTBCSCBCHHHHHHHHHC--SCEEEEEHHHHHHHHHHHHSTTTTCSCEEEEEESSSE-
T ss_pred             EEEEecccceeCCCCEEEecCCCCccCCchHHHHHHHHhC--CCEEEecHHHHHHHHHHHhCCCCCCCcEEEEEECCce-
Confidence            99999999865432            25 88999999997  89999999999999873     356799999999998 


Q ss_pred             eEeEecCCcEEe-----eCCCCCccCCc-CChHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHcCCCChhhHHHHhccCC
Q 020972          159 AYGFTEDGRDAR-----AAGAGPILGDW-GSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDP  232 (319)
Q Consensus       159 g~gii~dG~~~r-----aGg~Ghl~gd~-Gsa~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~  232 (319)
                      |+|++.||++++     +|||||+..+. |..++||+..+-.      ...+...+.+.+.+.+.......++...+...
T Consensus       147 G~giv~~G~l~~G~~g~aGE~Gh~~~~~~g~~c~cG~~gcle------~~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~  220 (326)
T 2qm1_A          147 GGGIVAAGKLLHGVAGCAGEVGHVTVDPNGFDCTCGKRGCLE------TVSSATGVVRVARHLSEEFAGDSELKQAIDDG  220 (326)
T ss_dssp             EEEEEETTEECCCSSSCTTCGGGSBSCTTSCBCTTSSBCBTH------HHHSHHHHHHHHHHHTTTCCSCCHHHHHHHHT
T ss_pred             EEEEEECCEEeecCCCcccccCcEEECCCCCcCCCCCccchH------hhhCHHHHHHHHHHHhhcccccchhhhccccc
Confidence            558999999998     89999998764 3334555432210      00122334444433332211112222222100


Q ss_pred             ChHHHhchhHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhcccccccEEEEcchhhhcHHHHHH
Q 020972          233 SWARIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEGVTYTKILKEKVPLLMENILFLLSWLVVFL  312 (319)
Q Consensus       233 ~~~~~a~~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~la~li~~l~~~~~~~~~~~~~~~~~~ivl~Gg~~~~~~~~~~~  312 (319)
                        .  ...++.|++++++||+.|.+++++++++|+.+++++++.|||              +.|||+||++ ..++.|++
T Consensus       221 --~--~~~~~~v~~~a~~gd~~a~~i~~~~~~~L~~~i~~l~~~l~p--------------~~IvlgGg~~-~~~~~~~~  281 (326)
T 2qm1_A          221 --Q--DVSSKDVFEFAEKGDHFALMVVDRVCFYLGLATGNLGNTLNP--------------DSVVIGGGVS-AAGEFLRS  281 (326)
T ss_dssp             --C--CCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHCC--------------SEEEEEESGG-GGTHHHHH
T ss_pred             --c--CCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhcCC--------------CEEEEcChhh-hchHHHHH
Confidence              0  013678999999999999999999999999999999999998              4799999998 66888888


Q ss_pred             HHhh
Q 020972          313 KLIE  316 (319)
Q Consensus       313 ~~~~  316 (319)
                      ++.+
T Consensus       282 ~l~~  285 (326)
T 2qm1_A          282 RVEK  285 (326)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8765

>3vgl_A Glucokinase; ROK family, transferase; HET: BGC ANP; 1.55A {Streptomyces griseus} PDB: 3vgk_A* 3vgm_A*

Probab=100.00  E-value=1.2e-35  Score=276.87  Aligned_cols=238  Identities=16%  Similarity=0.070  Sum_probs=180.4

Q ss_pred             cEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceEEEe
Q 020972           22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLA  101 (319)
Q Consensus        22 ~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Igig  101 (319)
                      +|+||||+|+|+++++++|.         +|+++.+.+.++  +  .+++++++.+.+.+++++++     .++.+|||+
T Consensus         2 ~~~lgiDiGgt~i~~~l~d~---------~G~i~~~~~~~~--~--~~~~~~~~~i~~~i~~~~~~-----~~i~gigi~   63 (321)
T 3vgl_A            2 GLTIGVDIGGTKIAAGVVDE---------EGRILSTFKVAT--P--PTAEGIVDAICAAVAGASEG-----HDVEAVGIG   63 (321)
T ss_dssp             CEEEEEEECSSEEEEEEECT---------TCCBCCCEEEEC--C--SSHHHHHHHHHHHHHHHHTT-----CCEEEEEEE
T ss_pred             cEEEEEEECCCEEEEEEECC---------CCCEEEEEEeeC--C--CCHHHHHHHHHHHHHHHHhh-----cCceEEEEe
Confidence            59999999999999999999         999998877654  2  47899999999999988753     378999999


Q ss_pred             ecCCCCchh------------HHHHHHHHHhhCCCCceEEEeCcHHHHHHhhc-----CCCCCeEEEEECccceeEeEec
Q 020972          102 VSGVNHPTD------------QQRILNWLRDIFPGNVRLYVHNDALAALASGT-----MGKLHGCVLIAGTGTIAYGFTE  164 (319)
Q Consensus       102 ~pG~~~~~~------------~~~l~~~L~~~~~~~~pv~v~NDa~aa~~g~~-----~g~~~~v~v~~GTGigg~gii~  164 (319)
                      +||+++.+.            ..+|++.|+++|+  .||+++||+|++++++.     ++.++++|+++|||++ +|++.
T Consensus        64 ~pG~vd~~~g~v~~~~~l~w~~~~l~~~l~~~~~--~pv~v~NDa~aaal~E~~~g~~~~~~~~~~l~~GtGiG-~gii~  140 (321)
T 3vgl_A           64 AAGYVDDKRATVLFAPNIDWRHEPLKDKVEQRVG--LPVVVENDANAAAWGEYRFGAGQGHDDVICITLGTGLG-GGIII  140 (321)
T ss_dssp             ESSEECTTSSCEEECSSSCCEEECHHHHHHHHHC--SCEEEEEHHHHHHHHHHHHSTTTTCSSEEEEEESSSEE-EEEEE
T ss_pred             ccccEeCCCCEEEeCCCCCCcCCCHHHHHhhhhC--CCEEEEehhhhHHHHHHHhCCCCCCCCEEEEEeCcceE-EEEEE
Confidence            999977542            3589999999997  89999999999999873     4568999999999985 57999


Q ss_pred             CCcEEe-----eCCCCCccCCcCChHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHcCCCChhhHHHHhcc----CCCh-
Q 020972          165 DGRDAR-----AAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYV----DPSW-  234 (319)
Q Consensus       165 dG~~~r-----aGg~Ghl~gd~Gsa~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~~~~~l~~~~~~----~~~~-  234 (319)
                      ||++++     +|++||+..+.                  ++..|.|....|++...   +...+.+.+..    .+.. 
T Consensus       141 ~G~l~~G~~g~aGEiGh~~v~~------------------~g~~c~cG~~gclE~~~---S~~al~~~~~~~~~~~~~~~  199 (321)
T 3vgl_A          141 GNKLRRGRFGVAAEFGHIRVVP------------------DGLLCGCGSQGCWEQYA---SGRALVRYAKQRANATPENA  199 (321)
T ss_dssp             TTEECCCTTSCCCCGGGSBSST------------------TCSBCTTSCBSBGGGTS---SHHHHHHHHHHHHHHCGGGC
T ss_pred             CCEEecCCCCCCccccceEecC------------------CCCCCCCCCcCcHHHhc---CHHHHHHHHHHHhhcCCcch
Confidence            999987     66666665432                  22222222222222221   22223222110    0000 


Q ss_pred             ---------HHHhchhHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhcccccccEEEEcchhhh
Q 020972          235 ---------ARIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEGVTYTKILKEKVPLLMENILFLL  305 (319)
Q Consensus       235 ---------~~~a~~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~la~li~~l~~~~~~~~~~~~~~~~~~ivl~Gg~~~~  305 (319)
                               ..-....+.|++++++||+.|++++++++++|+.+++++++.|||              +.|||+||++ .
T Consensus       200 ~~~~~~~~~~~~~~~~~~i~~~a~~gD~~a~~~~~~~~~~La~~i~~l~~~l~p--------------~~IvlgGgi~-~  264 (321)
T 3vgl_A          200 AVLLGLGDGSVDGIEGKHISEAARQGDPVAVDSFRELARWAGAGLADLASLFDP--------------SAFIVGGGVS-D  264 (321)
T ss_dssp             HHHHHTTTSSSTTCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHCC--------------SEEEEESGGG-G
T ss_pred             hhhhhcccCccccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhCC--------------CEEEEeChhh-c
Confidence                     000113578999999999999999999999999999999999998              4799999998 7


Q ss_pred             cHHHHHHHHhh
Q 020972          306 SWLVVFLKLIE  316 (319)
Q Consensus       306 ~~~~~~~~~~~  316 (319)
                      .++.|++++.+
T Consensus       265 ~~~~l~~~l~~  275 (321)
T 3vgl_A          265 EGELVLDPIRK  275 (321)
T ss_dssp             GTHHHHHHHHH
T ss_pred             chHHHHHHHHH
Confidence            88999888765

>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10

Probab=100.00  E-value=1.2e-34  Score=280.44  Aligned_cols=247  Identities=12%  Similarity=0.093  Sum_probs=190.9

Q ss_pred             cCCCcEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccce
Q 020972           18 SGGREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRA   97 (319)
Q Consensus        18 ~~m~~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~   97 (319)
                      +|...|+||||+|+|+++++++|.         +|+++.+.+.+.. .  .+++++++.+.+.+++++++.+.+..++.+
T Consensus       104 ~~~~~~~lGIDiGgt~i~~~l~d~---------~G~il~~~~~~~~-~--~~~~~~~~~l~~~i~~~~~~~~~~~~~i~g  171 (429)
T 1z05_A          104 NNLGWQFLSMRLGRGYLTIALHEL---------GGEVLIDTKIDIH-E--IDQDDVLARLLFEIEEFFQTYAAQLDRVTS  171 (429)
T ss_dssp             CCTTEEEEEEEEETTEEEEEEEET---------TSCEEEEEEEECC-C--CBHHHHHHHHHHHHHHHHHHTTTTCCEEEE
T ss_pred             CCCCCEEEEEEECCCEEEEEEECC---------CCCEEEEEEEcCC-C--CCHHHHHHHHHHHHHHHHHhcCCCcCceEE
Confidence            455679999999999999999999         9999998876542 2  368899999999999999988777778999


Q ss_pred             EEEeecCCCCchh------------HHHHHHHHHhhCCCCceEEEeCcHHHHHHhhc-----CCCCCeEEEEECccceeE
Q 020972           98 VCLAVSGVNHPTD------------QQRILNWLRDIFPGNVRLYVHNDALAALASGT-----MGKLHGCVLIAGTGTIAY  160 (319)
Q Consensus        98 Igig~pG~~~~~~------------~~~l~~~L~~~~~~~~pv~v~NDa~aa~~g~~-----~g~~~~v~v~~GTGigg~  160 (319)
                      |||++||+++++.            +.+|++.|+++|+  +||+|+||+|+++++|.     ++.++++|+++|||++ +
T Consensus       172 igi~~pG~vd~~~g~v~~~~~l~w~~~~l~~~L~~~~~--~pV~v~NDa~aaalaE~~~g~~~~~~~~v~l~~GtGiG-~  248 (429)
T 1z05_A          172 IAITLPGLVNSEQGIVLQMPHYNVKNLALGPEIYKATG--LPVFVANDTRAWALAEKLFGHSQDVDNSVLISIHHGLG-A  248 (429)
T ss_dssp             EEEEESSEEETTTTEEEECSSSBCSSBCHHHHHHHHHC--SCEEEEEHHHHHHHHHHHHSTTTTCSSEEEEEESSSEE-E
T ss_pred             EEEeccCcEeCCCCeEeecCCCCCCCCCHHHHHHHHhC--CCEEEechhHHHHHHHHHhCCCCCCCcEEEEEECCcEE-E
Confidence            9999999976432            2589999999997  89999999999999874     3567999999999995 5


Q ss_pred             eEecCCcEEe-----eCCCCCccCCc-CChHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHcCCCChhhHHHHhcc----
Q 020972          161 GFTEDGRDAR-----AAGAGPILGDW-GSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYV----  230 (319)
Q Consensus       161 gii~dG~~~r-----aGg~Ghl~gd~-Gsa~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~~~~~l~~~~~~----  230 (319)
                      |++.||++++     +|||||+..+. |..|+||+                   ..|++.+.   +...+.+.+..    
T Consensus       249 giv~~G~l~~G~~g~AGEiGH~~v~~~g~~c~cG~-------------------~gclE~~~---S~~al~~~~~~~~~~  306 (429)
T 1z05_A          249 GIVLDGRVLQGRHGNIGELGHIQIDPQGKRCHCGN-------------------YGCLETVA---SSQAIRDQVTARIQA  306 (429)
T ss_dssp             EEEETTEECCTTTTCTTBCTTSBCCTTCCBCTTSC-------------------BSBTHHHH---SHHHHHHHHHHHHHT
T ss_pred             EEEECCEEeeCCCCcccccCceEEcCCCCCCCCCC-------------------CcchHHHh---CHHHHHHHHHHHhhc
Confidence            8999999987     78888887753 33233332                   11222222   22223222210    


Q ss_pred             CCCh---HHHhchhHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhcccccccEEEEcchhhhcH
Q 020972          231 DPSW---ARIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEGVTYTKILKEKVPLLMENILFLLSW  307 (319)
Q Consensus       231 ~~~~---~~~a~~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~la~li~~l~~~~~~~~~~~~~~~~~~ivl~Gg~~~~~~  307 (319)
                      ....   .......+.|++++++||+.|++++++++++|+.+++++++.|||              +.|||+|+++ ..+
T Consensus       307 ~~~~~l~~~~~~~~~~i~~~a~~gD~~a~~il~~~~~~L~~~i~~l~~~ldP--------------~~IvlgG~i~-~~~  371 (429)
T 1z05_A          307 GEPSCLATVEEISIEDICAAAADGDPLAVDVIQQLGRYLGAAIAIVINLFNP--------------EKILIGGVIN-QAK  371 (429)
T ss_dssp             TCCCTTTTCSSCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHCC--------------SEEEEESGGG-GGH
T ss_pred             ccccccccccCCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhcCC--------------CEEEEeCccc-cch
Confidence            0000   000113678999999999999999999999999999999999998              4799999998 678


Q ss_pred             HHHHHHHhh
Q 020972          308 LVVFLKLIE  316 (319)
Q Consensus       308 ~~~~~~~~~  316 (319)
                      +.|++++.+
T Consensus       372 ~~l~~~l~~  380 (429)
T 1z05_A          372 SILYPSIEQ  380 (429)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            888888765

>3r8e_A Hypothetical sugar kinase; ribonuclease H-like motif, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.65A {Cytophaga hutchinsonii}

Probab=100.00  E-value=2.1e-34  Score=268.48  Aligned_cols=246  Identities=17%  Similarity=0.109  Sum_probs=180.9

Q ss_pred             cCCCcEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccce
Q 020972           18 SGGREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRA   97 (319)
Q Consensus        18 ~~m~~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~   97 (319)
                      .+...|+||||+|+|+++++++|.         +|+++.+.+.+.. . ..+++++++.+.+.++++++    ...++.+
T Consensus        15 ~~~~~~~lgidiggt~i~~~l~d~---------~g~il~~~~~~~~-~-~~~~~~~~~~i~~~i~~~~~----~~~~i~g   79 (321)
T 3r8e_A           15 LYFQGMILGIDVGGTSVKFGLVTP---------EGEIQNATRFMTA-D-WVNGIGFVESMKLEIGNFLK----QYPIVKG   79 (321)
T ss_dssp             ----CCEEEEECCSSEEEEEEECT---------TCCEEEEEEEEHH-H-HHTTTCHHHHHHHHHHHHHH----HCTTCCE
T ss_pred             hccCcEEEEEEECCCEEEEEEEcC---------CCcEEEEEEEeCC-C-CCCHHHHHHHHHHHHHHHHh----ccCCeeE
Confidence            455679999999999999999999         9999998876432 1 13677889999999998886    2347999


Q ss_pred             EEEeecCCCCchh-------------HHHHHHHHHhhC-CCCceEEEeCcHHHHHHhhc-----CCCCCeEEEEECccce
Q 020972           98 VCLAVSGVNHPTD-------------QQRILNWLRDIF-PGNVRLYVHNDALAALASGT-----MGKLHGCVLIAGTGTI  158 (319)
Q Consensus        98 Igig~pG~~~~~~-------------~~~l~~~L~~~~-~~~~pv~v~NDa~aa~~g~~-----~g~~~~v~v~~GTGig  158 (319)
                      |||++||+++++.             +.++++.|+++| +  +||+|+||+|+++++|.     ++.++++|+++|||++
T Consensus        80 igi~~pG~vd~~~g~v~~~~~l~~w~~~~l~~~l~~~~~~--~pV~v~NDa~aaalaE~~~g~~~~~~~~v~l~~GtGiG  157 (321)
T 3r8e_A           80 VGIGWPGLVSLDRTKVILLPNIPSVVNVPIVEILRSEFPH--IHFKIENDAKCAALGEYYFGENKRMQTFILLALGTGVG  157 (321)
T ss_dssp             EEEEESSEECTTSCCEEEBTTBCCCCSCCHHHHHHHHCTT--SEEEEEEHHHHHHHHHHHHSTTTTCSSEEEEEESSSEE
T ss_pred             EEEEecccEECCCCEEEeCCCCccccCCCHHHHHHHHcCC--CCEEEEchHHHHHHHHHHhCCCCCCCcEEEEEECCceE
Confidence            9999999977431             258999999999 6  99999999999999873     3568999999999985


Q ss_pred             eEeEecCCcEEe-----eCCCCCccCCcCChHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHcCCCChhhHHHHhccCCC
Q 020972          159 AYGFTEDGRDAR-----AAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPS  233 (319)
Q Consensus       159 g~gii~dG~~~r-----aGg~Ghl~gd~Gsa~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~  233 (319)
                       +|++.||++++     +|||||+. +.+.+++             +...+...+.+.+.+.........+ . ..    
T Consensus       158 -~gii~~G~l~~G~~g~aGEiGh~~-~~~~gcl-------------E~~~S~~al~~~~~~~~~~~~~~~~-~-~~----  216 (321)
T 3r8e_A          158 -SGVMMNGKLFIGGRGNGTEVGHML-TTRGKSL-------------ENQVGINHLIAYTHEQLALDVAKKS-S-LH----  216 (321)
T ss_dssp             -EEEEETTEECCCTTSCCCCGGGCB-CTTSSBS-------------HHHHSHHHHHHHHHHHHHHCTTCCC-S-GG----
T ss_pred             -EEEEECCEEecCCCCCCccccccc-CCCCCcH-------------HHhcCHHHHHHHHHHHhhccCcccc-c-cc----
Confidence             57999999998     88999988 6541110             0000111222222111100000000 0 00    


Q ss_pred             hHHHhchhHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhcccccccEEEEcchhhhcHHHHHHH
Q 020972          234 WARIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEGVTYTKILKEKVPLLMENILFLLSWLVVFLK  313 (319)
Q Consensus       234 ~~~~a~~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~la~li~~l~~~~~~~~~~~~~~~~~~ivl~Gg~~~~~~~~~~~~  313 (319)
                       .......+.|++++++||+.|++++++++++|+.+++++++.|||              +.|||+|+++ +.++.|+++
T Consensus       217 -~~~~~~~~~i~~~a~~gD~~a~~~~~~~~~~La~~i~~l~~~ldP--------------~~IvlgG~i~-~~~~~l~~~  280 (321)
T 3r8e_A          217 -TIAELSPKVIADHAAQGDALALAVWADIGTIIGESLVNIVRVMDL--------------NNILLGGGIS-GAFDYFVPN  280 (321)
T ss_dssp             -GCSSCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHCC--------------CEEEEESGGG-GGHHHHHHH
T ss_pred             -ccccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHCC--------------CEEEEeChhc-ccchHHHHH
Confidence             000113578999999999999999999999999999999999998              4899999998 889999988


Q ss_pred             Hhhc
Q 020972          314 LIEG  317 (319)
Q Consensus       314 ~~~~  317 (319)
                      +.+.
T Consensus       281 l~~~  284 (321)
T 3r8e_A          281 LKKA  284 (321)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8763

>4db3_A Glcnac kinase, N-acetyl-D-glucosamine kinase; structural genomics, center for structural genomics of infec diseases, csgid, transferase; 1.95A {Vibrio vulnificus}

Probab=100.00  E-value=9.3e-35  Score=271.63  Aligned_cols=245  Identities=16%  Similarity=0.038  Sum_probs=184.4

Q ss_pred             EEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceEEEee
Q 020972           23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV  102 (319)
Q Consensus        23 ~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Igig~  102 (319)
                      |+||||+|+|+++++++|.         +|+++.+.+.++.+   .+++++++.|.+.++++..+.+    .+.+|||++
T Consensus        25 ~~lgiDiGgt~i~~~l~d~---------~G~il~~~~~~~~~---~~~~~~~~~i~~~i~~~~~~~~----~~~gigi~~   88 (327)
T 4db3_A           25 MYYGFDVGGTKIEFGAFNE---------KLERVATERVPTPT---DDYPLLLETIAGLVAKYDQEFA----CEGKIGLGL   88 (327)
T ss_dssp             CEEEEEECSSEEEEEEECT---------TCCEEEEEEEECCT---TCHHHHHHHHHHHHHHHHHHHT----SCCEEEEEE
T ss_pred             EEEEEEECCCEEEEEEEeC---------CCcEEEEEEecCCC---CCHHHHHHHHHHHHHHHHHhcC----CccEEEEEe
Confidence            7999999999999999999         99999988875432   3788999999999999887653    478999999


Q ss_pred             cCCCCch------------hHHHHHHHHHhhCCCCceEEEeCcHHHHHHhhc-----CCCCCeEEEEECccceeEeEecC
Q 020972          103 SGVNHPT------------DQQRILNWLRDIFPGNVRLYVHNDALAALASGT-----MGKLHGCVLIAGTGTIAYGFTED  165 (319)
Q Consensus       103 pG~~~~~------------~~~~l~~~L~~~~~~~~pv~v~NDa~aa~~g~~-----~g~~~~v~v~~GTGigg~gii~d  165 (319)
                      ||+++++            .+.+|++.|+++|+  .||+|+||+|+++++|.     ++.++++|+++|||+| +|++.|
T Consensus        89 pG~vd~~~g~v~~~~~~~~~~~~l~~~l~~~~~--~pV~v~NDa~aaalgE~~~g~~~~~~~~~~l~~GtGiG-~gii~~  165 (327)
T 4db3_A           89 PGMEDADDATVLTVNVPAAKGKPLRADLEAKIG--RSVKIENDANCFALSEAWDEELQDAPSVMGLILGTGFG-GGLIYE  165 (327)
T ss_dssp             SEEECTTTCCEEESSSGGGTTSCHHHHHHHHHS--SCCEEEEHHHHHHHHHHTSTTTTTCSEEEEEEESSSEE-EEEEET
T ss_pred             eccEeCCCCEEEcCCCccccCCCHHHHHHHHHC--CCEEEecchhHHHHHHHHhCCCCCCCcEEEEEeCccce-EEEEEC
Confidence            9998753            23589999999997  89999999999999874     3467899999999995 579999


Q ss_pred             CcEEeeCCCCCccCCcCChHHHHHHHHHHHHH-----HhcCCCCCchhHHHHHHHcCCCChhhHHHHhccCCChHHHhch
Q 020972          166 GRDARAAGAGPILGDWGSGYGIAAQALTAVIR-----AYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWARIAAL  240 (319)
Q Consensus       166 G~~~raGg~Ghl~gd~Gsa~~iG~~~~~~~~~-----~~dg~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~  240 (319)
                      |++++        |..|.++|+||..+.....     ..++..|.|....+++...   +...+.+.+.....   ....
T Consensus       166 G~l~~--------G~~g~aGEiGh~~v~~~~~~~~~~~~~g~~C~cG~~gclE~~~---S~~al~~~~~~~~~---~~~~  231 (327)
T 4db3_A          166 GKVFS--------GRNNVAGELGHMRLPLDAWFHLGDNAPLLGCGCGKKGCLDSYL---SGRGFELLYAHYYG---EEKK  231 (327)
T ss_dssp             TEECC--------CTTSCTTCGGGSBCCHHHHHHTCTTCCCCBCTTSCBSBGGGTS---SHHHHHHHHHHHHS---CCCC
T ss_pred             CEEee--------cCCCcCcccccEEeccccccccccccCCCcCCCCCcchhHhhh---CHHHHHHHHHHhcC---CCCC
Confidence            99987        5555555555554431100     0144455554444443333   44444443321000   0013


Q ss_pred             hHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhcccccccEEEEcchhhhcHHHHHHHHhh
Q 020972          241 VPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEGVTYTKILKEKVPLLMENILFLLSWLVVFLKLIE  316 (319)
Q Consensus       241 ~~~v~~~A~~GD~~A~~il~~a~~~Lg~~la~li~~l~~~~~~~~~~~~~~~~~~ivl~Gg~~~~~~~~~~~~~~~  316 (319)
                      .+.|++++++||+.|++++++++++|+.+++++++.|||              +.|||+|+++ .. +.|++++.+
T Consensus       232 ~~~i~~~a~~gD~~a~~~~~~~~~~La~~i~~l~~~l~p--------------~~IvlgGgi~-~~-~~l~~~l~~  291 (327)
T 4db3_A          232 AIDIIKANAAGDEKAAEHVERFMELLAICFGNIFTANDP--------------HVVALGGGLS-NF-ELIYEEMPK  291 (327)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHCC--------------SEEEEESGGG-GC-THHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhCC--------------CEEEEeCccc-ch-HHHHHHHHH
Confidence            577999999999999999999999999999999999998              4799999998 55 457777665

>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10

Probab=100.00  E-value=1.7e-34  Score=275.07  Aligned_cols=240  Identities=14%  Similarity=0.133  Sum_probs=185.4

Q ss_pred             cCCCcEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccce
Q 020972           18 SGGREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRA   97 (319)
Q Consensus        18 ~~m~~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~   97 (319)
                      +|...|+||||+|+|+++++++|.         +|+++.+.+.+....  .+++++++.+.+.+++++++.+.+..++.+
T Consensus        83 ~~~~~~~lGIDiGgt~i~~~l~d~---------~G~vl~~~~~~~~~~--~~~~~~~~~l~~~i~~~~~~~~~~~~~i~g  151 (380)
T 2hoe_A           83 SPNCAYVLGIEVTRDEIAACLIDA---------SMNILAHEAHPLPSQ--SDREETLNVMYRIIDRAKDMMEKLGSKLSA  151 (380)
T ss_dssp             CGGGCEEEEEEECSSEEEEEEEET---------TCCEEEEEEEECCSS--CCHHHHHHHHHHHHHHHHHHHHHTTCCCCE
T ss_pred             ccCCCeEEEEEECCCEEEEEEECC---------CCCEEEEEEEccCCC--CCHHHHHHHHHHHHHHHHHhcCCCcCcEEE
Confidence            455679999999999999999999         999999887754322  378999999999999999887655568999


Q ss_pred             EEEeecCCCCchh------------HHHHHHHHHhhCCCCceEEEeCcHHHHHHhhc-CCC--CCeEEEEECccceeEeE
Q 020972           98 VCLAVSGVNHPTD------------QQRILNWLRDIFPGNVRLYVHNDALAALASGT-MGK--LHGCVLIAGTGTIAYGF  162 (319)
Q Consensus        98 Igig~pG~~~~~~------------~~~l~~~L~~~~~~~~pv~v~NDa~aa~~g~~-~g~--~~~v~v~~GTGigg~gi  162 (319)
                      ||||+||+++++.            +.++++.|++.|+  .||+++||+|++++++. +|.  ++++|+++|||++ +|+
T Consensus       152 igi~~pG~vd~~~g~v~~~~~l~w~~~~l~~~l~~~~~--~pV~v~NDanaaalaE~~~g~~~~~~v~l~~GtGiG-~gi  228 (380)
T 2hoe_A          152 LTVAAPGPIDTERGIIIDPRNFPLSQIPLANLLKEKYG--IEVWVENDADMGAVGEKWYTKRDDSFAWILTGKGIG-AGI  228 (380)
T ss_dssp             EEEEESSCEETTTTEECCCSSCTTBTSCHHHHHHHHHC--SEEEEEEHHHHHHHHHHHHTTCCSCEEEEEESSSCE-EEE
T ss_pred             EEEEeeccEECCCCEEeccCCCCCcCCChHHHHHHHhC--CCEEEechHHHHHHHHHHhCCCCCcEEEEEeCCceE-EEE
Confidence            9999999976532            2588999999997  89999999999999874 333  7999999999995 589


Q ss_pred             ecCCcEEeeCCCCCccCCcCChHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHcCCCChhhHHHHhccCCChHHHhchhH
Q 020972          163 TEDGRDARAAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWARIAALVP  242 (319)
Q Consensus       163 i~dG~~~raGg~Ghl~gd~Gsa~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~  242 (319)
                      +.||++++        |..|.++|+||..+.     .+ ..|.|+-..+++.++   +...+.+             ..+
T Consensus       229 v~~G~l~~--------G~~g~aGEiGh~~v~-----~~-~~c~cG~~gclE~~~---s~~~l~~-------------~~~  278 (380)
T 2hoe_A          229 IIDGELYR--------GENGYAGEIGYTRVF-----NG-NEYVFLEDVCNENVV---LKHVLSM-------------GFS  278 (380)
T ss_dssp             EETTEECC--------CSSSCCCCGGGCEEE-----CS-SSEEEHHHHHCHHHH---HHHHHHH-------------CCC
T ss_pred             EECCEEec--------cCCCccccccceEec-----CC-CCCCCCCccHHHHHc---CHHHHHH-------------HHH
Confidence            99999987        334444444443321     11 223344444444433   2222221             234


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhcccccccEEEEcchhhhcHHHHHHHHhh
Q 020972          243 VVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEGVTYTKILKEKVPLLMENILFLLSWLVVFLKLIE  316 (319)
Q Consensus       243 ~v~~~A~~GD~~A~~il~~a~~~Lg~~la~li~~l~~~~~~~~~~~~~~~~~~ivl~Gg~~~~~~~~~~~~~~~  316 (319)
                      .+++++++||+.|.+++++++++|+.+++++++.|||              +.|||+|+++ ..++.|++++.+
T Consensus       279 ~v~~~a~~gD~~a~~~l~~~~~~La~~i~~l~~~ldP--------------~~IvlgG~~~-~~~~~l~~~l~~  337 (380)
T 2hoe_A          279 SLAEARDSGDVRVKEYFDDIARYFSIGLLNLIHLFGI--------------SKIVIGGFFK-ELGENFLKKIKI  337 (380)
T ss_dssp             -TTHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHCC--------------CEEEEEEGGG-GGHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhCC--------------CEEEEcCchh-hhhHHHHHHHHH
Confidence            5788899999999999999999999999999999998              4799999998 678888888765

>3vov_A Glucokinase, hexokinase; ROK, sugar kinase, transferase; 2.02A {Thermus thermophilus}

Probab=100.00  E-value=2.1e-34  Score=266.41  Aligned_cols=242  Identities=17%  Similarity=0.142  Sum_probs=183.0

Q ss_pred             EEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceEEEee
Q 020972           23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV  102 (319)
Q Consensus        23 ~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Igig~  102 (319)
                      |+||||+|+|+++++++|.         + .++.+.+.++. .  ...+++++.+.+.+++++++.   ..++.+|||++
T Consensus         2 ~~lgiDiGgt~i~~~l~d~---------~-~~l~~~~~~~~-~--~~~~~~~~~i~~~i~~~~~~~---~~~i~gigi~~   65 (302)
T 3vov_A            2 KVVGLDLGGTKIAAGVFDG---------K-RLLSKVVVPTP-K--EGGERVAEALAEAAERAEREA---GVRGEAIGLGT   65 (302)
T ss_dssp             CEEEEEECSSEEEEEEECS---------S-SBSCCEEEECC-S--SCHHHHHHHHHHHHHHHHHHH---TCCCSSEEEEE
T ss_pred             EEEEEEEcCCEEEEEEEeC---------C-CcEEEEEEcCC-C--CChHHHHHHHHHHHHHHHhhc---cCCceEEEEEe
Confidence            7999999999999999998         7 45555555432 2  234889999999999988765   34799999999


Q ss_pred             cCCCCchh-------------HHHHHHHHHhhCCCCceEEEeCcHHHHHHhhc-----CCCCCeEEEEECccceeEeEec
Q 020972          103 SGVNHPTD-------------QQRILNWLRDIFPGNVRLYVHNDALAALASGT-----MGKLHGCVLIAGTGTIAYGFTE  164 (319)
Q Consensus       103 pG~~~~~~-------------~~~l~~~L~~~~~~~~pv~v~NDa~aa~~g~~-----~g~~~~v~v~~GTGigg~gii~  164 (319)
                      ||+++++.             +.++++.|+++|+  +||+++||+|+++++|.     ++.++++|+++|||++ +|++.
T Consensus        66 pG~vd~~~g~v~~~~~~~~w~~~~l~~~l~~~~~--~pv~v~NDa~aaal~E~~~g~~~~~~~~~~l~~GtGiG-~gii~  142 (302)
T 3vov_A           66 PGPLDFRRGVIRFAPNIPGVQDFPIRRILEEATG--RPVFLENDANAAALAEHHLGAAQGEESSLYLTVSTGIG-GGVVL  142 (302)
T ss_dssp             SSCEETTTTEEC---CCTTCTTCCHHHHHHHHHS--SCEEEEEHHHHHHHHHHHHSTTTTCSCEEEEEESSSEE-EEEEE
T ss_pred             cccEeCCCCEEEcCCCCCCcCCCChHHHHHHhhC--CCEEEEechHHHHHHHHHhCCCCCCCCEEEEEECCcee-EEEEE
Confidence            99976431             2578999999997  99999999999999874     3568999999999995 57999


Q ss_pred             CCcEEeeCCCCCccCCcCChHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHcCCCChhhHHHHhccCCChHHHhchhHHH
Q 020972          165 DGRDARAAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWARIAALVPVV  244 (319)
Q Consensus       165 dG~~~raGg~Ghl~gd~Gsa~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~v  244 (319)
                      ||++++        |..|.++|+||..+.     .++..|.|....+++...   +...+.+.+.....   .....+.|
T Consensus       143 ~g~l~~--------G~~g~aGEiGh~~v~-----~~g~~c~cg~~gclE~~~---s~~~l~~~~~~~~~---~~~~~~~i  203 (302)
T 3vov_A          143 GGRVLR--------GERGQGGELGHLTLL-----PGGPACGCGLEGCLEALA---AGRALERDATYAFQ---RPVDTREL  203 (302)
T ss_dssp             TTEECC--------CTTSCTTCGGGSBSS-----TTCCBCTTSCBSBHHHHH---SHHHHHHHHHHHHT---SCCCHHHH
T ss_pred             CCEEee--------CCCCCCccccceEec-----CCCCCCCCCCcchHHHHh---CHHHHHHHHHHhhC---CCCCHHHH
Confidence            999998        556666666665442     244445554444444444   33444443321000   00135789


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhcccccccEEEEcchhhhcHHHHHHHHhh
Q 020972          245 VSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEGVTYTKILKEKVPLLMENILFLLSWLVVFLKLIE  316 (319)
Q Consensus       245 ~~~A~~GD~~A~~il~~a~~~Lg~~la~li~~l~~~~~~~~~~~~~~~~~~ivl~Gg~~~~~~~~~~~~~~~  316 (319)
                      ++++++||+.|++++++++++|+.+++++++.|||              +.|||+|+++...++.|++++.+
T Consensus       204 ~~~a~~gd~~a~~~~~~~~~~l~~~i~~l~~~~~p--------------~~ivlgG~i~~~~~~~l~~~l~~  261 (302)
T 3vov_A          204 FRLFQAGDPKAERLVLQAARYVGIGLASLVKAFDP--------------GVVVLGGGVALNAPEGYWEALLE  261 (302)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHCC--------------SEEEEESHHHHTSCHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHCC--------------CEEEEeChhHhhhhHHHHHHHHH
Confidence            99999999999999999999999999999999998              47889888874567888888765

>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A

Probab=100.00  E-value=2.2e-34  Score=276.48  Aligned_cols=247  Identities=12%  Similarity=0.085  Sum_probs=188.7

Q ss_pred             cCCCcEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccce
Q 020972           18 SGGREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRA   97 (319)
Q Consensus        18 ~~m~~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~   97 (319)
                      +|...|+||||+|+|+++++++|.         +|+++.+.+.+. ..  .+++++++.+.+.+++++++.+.+..++.+
T Consensus        81 ~~~~~~~lgiDiG~t~i~~~l~d~---------~G~il~~~~~~~-~~--~~~~~~~~~l~~~i~~~~~~~~~~~~~i~g  148 (406)
T 1z6r_A           81 ETEAWHYLSLRISRGEIFLALRDL---------SSKLVVEESQEL-AL--KDDLPLLDRIISHIDQFFIRHQKKLERLTS  148 (406)
T ss_dssp             CCTTCEEEEEEEETTEEEEEEEET---------TCCEEEEEEEEC-CS--SCSSCHHHHHHHHHHHHHHHTGGGCCCEEE
T ss_pred             cCCccEEEEEEEcCCEEEEEEEcC---------CCCEEEEEEecC-CC--CCHHHHHHHHHHHHHHHHHhcCCCcCceeE
Confidence            566779999999999999999999         999999887654 22  467888999999999999887766668999


Q ss_pred             EEEeecCCCCchh-------------HHHHHHHHHhhCCCCceEEEeCcHHHHHHhhc-----CCCCCeEEEEECcccee
Q 020972           98 VCLAVSGVNHPTD-------------QQRILNWLRDIFPGNVRLYVHNDALAALASGT-----MGKLHGCVLIAGTGTIA  159 (319)
Q Consensus        98 Igig~pG~~~~~~-------------~~~l~~~L~~~~~~~~pv~v~NDa~aa~~g~~-----~g~~~~v~v~~GTGigg  159 (319)
                      |||++||+++++.             +.+|++.|++.|+  .||+|+||+|++++++.     .+.++++|+++|||++ 
T Consensus       149 igi~~pG~vd~~~g~v~~~~~l~~w~~~~l~~~l~~~~~--~pv~v~NDa~aaalaE~~~g~~~~~~~~v~l~~GtGiG-  225 (406)
T 1z6r_A          149 IAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTG--VPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVG-  225 (406)
T ss_dssp             EEEEESSEEETTTTEEEECTTCTTCSSBCHHHHHHHHHS--SCEEEEEHHHHHHHHHHHHSTTTTCSSEEEEEESSSEE-
T ss_pred             EEEEeecCEeCCCCEEecCCCCCCccCCCHHHHHHHHHC--CCEEEechhHHHHHHHHHhcCCCCCCcEEEEEECCcEE-
Confidence            9999999965421             2579999999997  89999999999999874     3567899999999995 


Q ss_pred             EeEecCCcEEe-----eCCCCCccCCc-CChHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHcCCCChhhHHHHhcc---
Q 020972          160 YGFTEDGRDAR-----AAGAGPILGDW-GSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYV---  230 (319)
Q Consensus       160 ~gii~dG~~~r-----aGg~Ghl~gd~-Gsa~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~~~~~l~~~~~~---  230 (319)
                      +|++.||++++     +|||||+..+. |..|+||+.                   .|++.+.   +...+.+.+..   
T Consensus       226 ~giv~~G~l~~G~~g~AGEiGh~~v~~~g~~c~cG~~-------------------gclE~~~---S~~al~~~~~~~~~  283 (406)
T 1z6r_A          226 AGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNH-------------------GCLETIA---SVDSILELAQLRLN  283 (406)
T ss_dssp             EEEEETTEETTTTSSCCBCGGGSBSCTTSCBCTTSCB-------------------SBTHHHH---SHHHHHHHHHHHHT
T ss_pred             EEEEECCEEeecCCCcCccCCceEecCCCCCCCCCCc-------------------cchHHHc---CHHHHHHHHHHhhh
Confidence            58999999986     78888887653 333333321                   1122222   22222222110   


Q ss_pred             -CC-Ch-HHHhchhHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhcccccccEEEEcchhhhcH
Q 020972          231 -DP-SW-ARIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEGVTYTKILKEKVPLLMENILFLLSW  307 (319)
Q Consensus       231 -~~-~~-~~~a~~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~la~li~~l~~~~~~~~~~~~~~~~~~ivl~Gg~~~~~~  307 (319)
                       .. .. ..-....+.|++++++||+.|.+++++++++|+.+++++++.|||              +.|||+|+++ ..+
T Consensus       284 ~~~~~~~~~~~~~~~~v~~~a~~gD~~a~~~l~~~~~~L~~~i~~l~~~ldP--------------~~IvlgG~i~-~~~  348 (406)
T 1z6r_A          284 QSMSSMLHGQPLTVDSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNP--------------QKILIGSPLS-KAA  348 (406)
T ss_dssp             TCTTCGGGSSCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHCC--------------SEEEEESGGG-GGH
T ss_pred             cccccccCcccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhcCC--------------CEEEEeCccc-hhh
Confidence             00 00 000113678999999999999999999999999999999999998              4799999998 678


Q ss_pred             HHHHHHHhh
Q 020972          308 LVVFLKLIE  316 (319)
Q Consensus       308 ~~~~~~~~~  316 (319)
                      +.|++++.+
T Consensus       349 ~~l~~~i~~  357 (406)
T 1z6r_A          349 DILFPVISD  357 (406)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            888887765

>4htl_A Beta-glucoside kinase; structural genomics, sugar kinase, ROK family, PSI-biology, center for structural genomics, MCSG, transferase; HET: MSE; 1.64A {Listeria monocytogenes}

Probab=100.00  E-value=7.4e-34  Score=262.09  Aligned_cols=230  Identities=14%  Similarity=0.129  Sum_probs=168.4

Q ss_pred             EEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceEEEee
Q 020972           23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV  102 (319)
Q Consensus        23 ~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Igig~  102 (319)
                      |+||||+|+|+++++++|.         +|+++.+.+.+..+   .+++++++.+.+.    +++    ..++.+|||++
T Consensus         5 ~~lgiDiGgt~i~~~l~d~---------~G~il~~~~~~~~~---~~~~~~~~~i~~~----~~~----~~~i~gigi~~   64 (297)
T 4htl_A            5 KIAAFDIGGTALKMGVVLP---------HGEIILTKSAEISG---SDGDQILAEMKVF----LAE----NTDVTGIAVSA   64 (297)
T ss_dssp             CEEEEEECSSEEEEEEECT---------TSCEEEEEEEECST---TCHHHHHHHHHHH----HHT----CTTCCEEEEEE
T ss_pred             EEEEEEeCCCeEEEEEECC---------CCCEEEEEEecCCC---CCHHHHHHHHHHH----Hhh----cCCeeEEEEec
Confidence            7999999999999999999         99999988775432   3456666555443    332    24789999999


Q ss_pred             cCCCCchh-------------HHHHHHHHHhhCCCCceEEEeCcHHHHHHhhc-----CCCCCeEEEEECccceeEeEec
Q 020972          103 SGVNHPTD-------------QQRILNWLRDIFPGNVRLYVHNDALAALASGT-----MGKLHGCVLIAGTGTIAYGFTE  164 (319)
Q Consensus       103 pG~~~~~~-------------~~~l~~~L~~~~~~~~pv~v~NDa~aa~~g~~-----~g~~~~v~v~~GTGigg~gii~  164 (319)
                      ||+++++.             +.+|++.|+++|+  +||+++||+|+++++|.     ++.++++|+++|||+|+ |++.
T Consensus        65 pG~vd~~~g~v~~~~~l~~w~~~~l~~~l~~~~~--~pV~v~NDa~aaal~E~~~g~~~~~~~~~~l~~GtGiG~-giv~  141 (297)
T 4htl_A           65 PGYVNPKTGLITMGGAIRRFDNFNLKEWLEAETG--LPVAIENDANCALLAEKWLGKGQDLDDFLCLTIGTGIGG-GIFS  141 (297)
T ss_dssp             SSEECTTTCEEEECTTCGGGTTEEHHHHHHHHHC--SCEEEEEHHHHHHHHHHHHSTTTTCSSEEEEEESSSEEE-EEEE
T ss_pred             CcceeCCCCEEEeCCCCCCccCCCHHHHHHHHHC--cCEEEecHHHHHHHHHHHhCCCCCCCcEEEEEECcceEE-EEEE
Confidence            99976431             2478999999997  99999999999999874     35689999999999954 7999


Q ss_pred             CCcEEe-----eCCCCCccCCcCChHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHcCCCChhhHHHHhcc--CCChHHH
Q 020972          165 DGRDAR-----AAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYV--DPSWARI  237 (319)
Q Consensus       165 dG~~~r-----aGg~Ghl~gd~Gsa~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~  237 (319)
                      ||++++     +|++||+..+.....                    ++-..++++.+   +...+.+.+..  ...... 
T Consensus       142 ~G~l~~G~~g~aGEiGh~~~~~~~~~--------------------~~~~~~le~~~---s~~~l~~~~~~~~~~~~~~-  197 (297)
T 4htl_A          142 NGELVRGGRFRAGEFGYMFSERPGAF--------------------RPGKYTLNETT---TMLVLRRQYAELTGRPLEE-  197 (297)
T ss_dssp             TTEECCCTTSCCCCGGGSBSSCCCSS--------------------CGGGGBHHHHS---SHHHHHHHHHHHHCCCGGG-
T ss_pred             CCEEEecCCCCcccccceEecCCCCc--------------------CcccCcHHHhc---cHHHHHHHHHHHhcCCccC-
Confidence            999987     677777655322110                    01111222222   33333332211  001111 


Q ss_pred             hchhHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhcccccccEEEEcchhhhcHHHHHHHHhh
Q 020972          238 AALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEGVTYTKILKEKVPLLMENILFLLSWLVVFLKLIE  316 (319)
Q Consensus       238 a~~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~la~li~~l~~~~~~~~~~~~~~~~~~ivl~Gg~~~~~~~~~~~~~~~  316 (319)
                       ...+.|++++++||+.|++++++++++|+.+++++++.|||              +.|||+||++ .. +.|++++.+
T Consensus       198 -~~~~~i~~~a~~gd~~a~~~~~~~~~~La~~i~~l~~~~~p--------------~~IvlgGgi~-~~-~~~~~~l~~  259 (297)
T 4htl_A          198 -ITGEEIFANYDAHDAVSERLITEFYTGICTGLYNLIYLFDP--------------THIFIGGGIT-SR-PTFIAELKH  259 (297)
T ss_dssp             -CCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHCC--------------SEEEEESGGG-GS-TTHHHHHHH
T ss_pred             -CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhCC--------------CEEEEeCccc-cc-HHHHHHHHH
Confidence             12578999999999999999999999999999999999998              4799999998 44 557777765

>2ap1_A Putative regulator protein; zinc binding protein, structural genomics, PSI, protein STRU initiative; 1.90A {Salmonella typhimurium} SCOP: c.55.1.10 c.55.1.10

Probab=100.00  E-value=2.9e-33  Score=261.15  Aligned_cols=246  Identities=16%  Similarity=0.072  Sum_probs=183.3

Q ss_pred             cEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceEEEe
Q 020972           22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLA  101 (319)
Q Consensus        22 ~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Igig  101 (319)
                      .|+||||+|+|+++++++|.         +|+++.+.+.++.+   .+++++++.|.+.++++..+.+    ++.+||||
T Consensus        24 ~~~lgiDiGgt~i~~~l~d~---------~g~il~~~~~~~~~---~~~~~~~~~i~~~i~~~~~~~~----~i~~igi~   87 (327)
T 2ap1_A           24 AMYYGFDIGGTKIALGVFDS---------TRRLQWEKRVPTPH---TSYSAFLDAVCELVEEADQRFG----VKGSVGIG   87 (327)
T ss_dssp             CEEEEEEECSSEEEEEEEET---------TCCEEEEEEEECCC---SCHHHHHHHHHHHHHHHHHHHT----SCCEEEEE
T ss_pred             ceEEEEEECCCEEEEEEEeC---------CCCEEEEEEecCCC---CCHHHHHHHHHHHHHHHHHhcC----CccEEEEE
Confidence            37999999999999999999         99999988775533   2678889999999988876542    47899999


Q ss_pred             ecCCCCchh------------HHHHHHHHHhhCCCCceEEEeCcHHHHHHhhc-C----CCCCeEEEEECccceeEeEec
Q 020972          102 VSGVNHPTD------------QQRILNWLRDIFPGNVRLYVHNDALAALASGT-M----GKLHGCVLIAGTGTIAYGFTE  164 (319)
Q Consensus       102 ~pG~~~~~~------------~~~l~~~L~~~~~~~~pv~v~NDa~aa~~g~~-~----g~~~~v~v~~GTGigg~gii~  164 (319)
                      +||+++++.            +.+|++.|++.|+  +||+|+||+|++++++. +    +.++++|+++|||++ +|++.
T Consensus        88 ~pG~vd~~~g~v~~~~~~~~~~~~l~~~l~~~~~--~pv~v~NDa~aaalgE~~~g~~~~~~~~v~l~~GtGiG-~giv~  164 (327)
T 2ap1_A           88 IPGMPETEDGTLYAANVPAASGKPLRADLSARLD--RDVRLDNDANCFALSEAWDDEFTQYPLVMGLILGTGVG-GGLVL  164 (327)
T ss_dssp             ESSBSCCTTSCCBCTTCTTTTTSCHHHHHHHHHT--SCEEEEEHHHHHHHHHHTSTTGGGCSEEEEEEESSSEE-EEEEE
T ss_pred             eeeeEECCCCEEEccCCCccCCCChHHHHHHHHC--CCEEEecHHHHHHHHHHHhCcCCCCCcEEEEEECCcEE-EEEEE
Confidence            999976532            2478999999997  89999999999999874 2    457899999999985 58999


Q ss_pred             CCcEEe-----eCCCCCccCCcCChHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHcCCCChhhHHHHhccCCChHHHhc
Q 020972          165 DGRDAR-----AAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWARIAA  239 (319)
Q Consensus       165 dG~~~r-----aGg~Ghl~gd~Gsa~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~  239 (319)
                      ||++++     +|+|||+..+.++..+.+.        ...+..|.|....+++..+   +...+.+.+..... .  ..
T Consensus       165 ~G~l~~G~~g~aGE~Gh~~~~~~~~~~~~~--------~~~g~~c~cG~~gcle~~~---s~~~l~~~~~~~~~-~--~~  230 (327)
T 2ap1_A          165 NGKPITGQSYITGEFGHMRLPVDALTLMGF--------DFPLRRCGCGQMGCIENYL---SGRGFAWLYQHYYD-Q--SL  230 (327)
T ss_dssp             TTEEECCTTSCTTCGGGSBCCHHHHHHHCT--------TSCCCBCTTSCBSBTHHHH---SHHHHHHHHHHHHC-C--CC
T ss_pred             CCEEeecCCCcccccccEEEecCccccccc--------ccCCCcCCCCchhhHHHHh---CHHHHHHHHHHhcC-C--CC
Confidence            999987     6778887766543332111        0113334443333444444   33444443321000 0  01


Q ss_pred             hhHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhcccccccEEEEcchhhhcHHHHHHHHhh
Q 020972          240 LVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEGVTYTKILKEKVPLLMENILFLLSWLVVFLKLIE  316 (319)
Q Consensus       240 ~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~la~li~~l~~~~~~~~~~~~~~~~~~ivl~Gg~~~~~~~~~~~~~~~  316 (319)
                      .++.|+++|++||+.|++++++++++|+.+++++++.|||              +.|||+|+++ ..++ ++.++++
T Consensus       231 ~~~~i~~~a~~gd~~a~~il~~~~~~La~~i~~l~~~l~p--------------~~IvlgG~i~-~~~~-~~~~l~~  291 (327)
T 2ap1_A          231 QAPEIIALWEQGDEQAHAHVERYLDLLAVCLGNILTIVDP--------------DLLVIGGGLS-NFTA-ITTQLAE  291 (327)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHCC--------------SEEEEESGGG-GSTH-HHHSSGG
T ss_pred             CHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhCC--------------CEEEEeChhh-cchh-HHHHHHH
Confidence            3678999999999999999999999999999999999998              4799999998 5555 4445544

>3htv_A D-allose kinase, allokinase; NP_418508.1, structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; HET: MSE; 1.95A {Escherichia coli k-12}

Probab=100.00  E-value=2.2e-33  Score=260.57  Aligned_cols=240  Identities=11%  Similarity=0.062  Sum_probs=163.4

Q ss_pred             cCCCcEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccce
Q 020972           18 SGGREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRA   97 (319)
Q Consensus        18 ~~m~~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~   97 (319)
                      +|...|+||||+|+|+++++++|.         +|+++.+.+.++.+   ..++.+++.+.+.+++++++.+   .++.+
T Consensus         3 ~~~~~~~lgiDiGgt~i~~~l~d~---------~G~il~~~~~~~~~---~~~~~~~~~i~~~i~~~~~~~~---~~i~g   67 (310)
T 3htv_A            3 QKQHNVVAGVDMGATHIRFCLRTA---------EGETLHCEKKRTAE---VIAPGLVSGIGEMIDEQLRRFN---ARCHG   67 (310)
T ss_dssp             -CCEEEEEEEEECSSEEEEEEEET---------TSCEEEEEEEEHHH---HHTTCHHHHHHHHHHHHHHHHT---EEEEE
T ss_pred             CCCCCEEEEEEeCCCEEEEEEECC---------CCCEEEEEEecCcc---ccHHHHHHHHHHHHHHHHHhcC---CCeeE
Confidence            455679999999999999999999         99999887654321   1245677888888888776653   26899


Q ss_pred             EEEeecCCCCchh------------H---HHHHHHHHhhCCCCceEEEeCcHHHHHHhhc----CCCCCeEEEEECccce
Q 020972           98 VCLAVSGVNHPTD------------Q---QRILNWLRDIFPGNVRLYVHNDALAALASGT----MGKLHGCVLIAGTGTI  158 (319)
Q Consensus        98 Igig~pG~~~~~~------------~---~~l~~~L~~~~~~~~pv~v~NDa~aa~~g~~----~g~~~~v~v~~GTGig  158 (319)
                      ||||+||+++++.            .   .+|++.|+++|+  +||+++||+|++++++.    .+.++++|+++|||+|
T Consensus        68 igi~~pG~vd~~~g~v~~~~~l~~~~~~~~~l~~~l~~~~~--~pv~v~NDanaaa~~e~~~~~~~~~~~~~v~~GtGiG  145 (310)
T 3htv_A           68 LVMGFPALVSKDKRTIISTPNLPLTAADLYDLADKLENTLN--CPVEFSRDVNLQLSWDVVENRLTQQLVLAAYLGTGMG  145 (310)
T ss_dssp             EEEEESSCBCTTSSCBCSCCSSSCCHHHHTTHHHHHHHHHT--SCEEEEEHHHHHHHHHHHHTTCTTSCEEEEEESSSEE
T ss_pred             EEEeccccEeCCCCEEEeCCCCCCccccCccHHHHHHHHhC--CCEEEeeHHHHHHHHHHhhcccCCceEEEEEeceeEE
Confidence            9999999987431            1   478999999997  99999999999887652    3557899999999995


Q ss_pred             eEeEecCCcEEeeCCCCCccCCcCChHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHcCCCChhhHHHHhccCCChHHHh
Q 020972          159 AYGFTEDGRDARAAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWARIA  238 (319)
Q Consensus       159 g~gii~dG~~~raGg~Ghl~gd~Gsa~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a  238 (319)
                      + |+++||++++        |..|.++|+||..+.     .++..|.|+...|++.+.   +...+.++......  .  
T Consensus       146 ~-gii~~G~l~~--------G~~g~aGEiGh~~v~-----~~g~~C~cG~~GclE~~~---S~~al~~~~~~~~~--~--  204 (310)
T 3htv_A          146 F-AVWMNGAPWT--------GAHGVAGELGHIPLG-----DMTQHCACGNPGCLETNC---SGMALRRWYEQQPR--N--  204 (310)
T ss_dssp             E-EEEETTEEEC--------CSSSCCCC--------------------------CCSS---SHHHHHHHHTTSCC--S--
T ss_pred             E-EEEECCEEee--------cCCCCceeCcceEeC-----CCCCcCCCCCCceehhhh---CHHHHHHHHHhccC--C--
Confidence            5 7999999998        777777778877663     244455555444443332   44555554432111  0  


Q ss_pred             chhHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhcccccccEEEEcchhhhcHHHHHHHHh
Q 020972          239 ALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEGVTYTKILKEKVPLLMENILFLLSWLVVFLKLI  315 (319)
Q Consensus       239 ~~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~la~li~~l~~~~~~~~~~~~~~~~~~ivl~Gg~~~~~~~~~~~~~~  315 (319)
                      ...+.+++++ ++|+.+.++++++    +.++++++++|||              +.|||+||++ +.++.+++++.
T Consensus       205 ~~~~~~~~~~-~~d~~~~~~~~~~----a~~la~l~~~~dP--------------~~IvlgG~v~-~~~~~~~~~l~  261 (310)
T 3htv_A          205 YPLRDLFVHA-ENAPFVQSLLENA----ARAIATSINLFDP--------------DAVILGGGVM-DMPAFPRETLV  261 (310)
T ss_dssp             SCGGGHHHHH-TTCHHHHHHHHHH----HHHHHHHHHHHCC--------------SEEEEECTTT-TSTTCCHHHHH
T ss_pred             CCHHHHHHHH-cCChHHHHHHHHH----HHHHHHHHHhhCC--------------CEEEEeCchh-ccchhHHHHHH
Confidence            1234577766 5999888887764    5678899999998              5899999998 66655554444

>2yhw_A Bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase; transferase, sialic acid, mannac, ROK family; HET: BM3 2PE; 1.64A {Homo sapiens} PDB: 2yhy_A* 2yi1_A* 3eo3_A

Probab=100.00  E-value=4.3e-33  Score=261.68  Aligned_cols=242  Identities=15%  Similarity=0.123  Sum_probs=177.2

Q ss_pred             CcEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceEEE
Q 020972           21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCL  100 (319)
Q Consensus        21 ~~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Igi  100 (319)
                      ..|+||||+|+|+++++++|.         +|+++.+.+.++ +   .+++++++.+.+.+++++++.+....++.+|||
T Consensus        29 ~~~~lgiDiGgt~i~~~l~d~---------~G~il~~~~~~~-~---~~~~~~~~~i~~~i~~~~~~~~~~~~~i~gigi   95 (343)
T 2yhw_A           29 TLSALAVDLGGTNLRVAIVSM---------KGEIVKKYTQFN-P---KTYEERINLILQMCVEAAAEAVKLNCRILGVGI   95 (343)
T ss_dssp             EEEEEEEEECSSEEEEEEEET---------TSCEEEEEEEEC-C---SSHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEE
T ss_pred             CcEEEEEEECCCEEEEEEECC---------CCcEEEEEEEcC-C---CCHHHHHHHHHHHHHHHHHhcccccCceEEEEE
Confidence            359999999999999999999         999998877643 2   367888899999999988775544567999999


Q ss_pred             eecCCCCchh--------------HHHHHHHHHhhCCCCceEEEeCcHHHHHHhhc-----CCCCCeEEEEECccceeEe
Q 020972          101 AVSGVNHPTD--------------QQRILNWLRDIFPGNVRLYVHNDALAALASGT-----MGKLHGCVLIAGTGTIAYG  161 (319)
Q Consensus       101 g~pG~~~~~~--------------~~~l~~~L~~~~~~~~pv~v~NDa~aa~~g~~-----~g~~~~v~v~~GTGigg~g  161 (319)
                      ++||+++++.              +.+|++.|+++|+  .||+|+||+|++++++.     .+.++++|+++|||++ +|
T Consensus        96 ~~pG~vd~~~g~v~~~~~~~~~w~~~~l~~~l~~~~~--~pv~v~NDa~aaal~E~~~g~~~~~~~~v~i~~GtGiG-~g  172 (343)
T 2yhw_A           96 STGGRVNPREGIVLHSTKLIQEWNSVDLRTPLSDTLH--LPVWVDNDGNCAALAERKFGQGKGLENFVTLITGTGIG-GG  172 (343)
T ss_dssp             EESSEEETTTTEEEECCTTSSSCSSEECHHHHHHHHC--SCEEEEEHHHHHHHHHHHTSTTTTCSCEEEEEESSSEE-EE
T ss_pred             ecccCEeCCCCEEEeCCcCCCCCcCCCHHHHHHHHHC--CCEEEechhHHHHHHHHHhCCCCCCCcEEEEEECCCEE-EE
Confidence            9999865421              1468899999997  89999999999999874     2457899999999985 58


Q ss_pred             EecCCcEEe-----eCCCCCccCCc-CChHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHcCCCChhhHHHHhccCCChH
Q 020972          162 FTEDGRDAR-----AAGAGPILGDW-GSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWA  235 (319)
Q Consensus       162 ii~dG~~~r-----aGg~Ghl~gd~-Gsa~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~  235 (319)
                      ++.||++++     +|||||+..+. |..|+||...+-.      ...+...+.+.+.+.+.. +...+    .......
T Consensus       173 ii~~G~l~~G~~g~aGEiGh~~~~~~g~~c~cG~~gclE------~~~s~~al~~~~~~~~~~-~~~~~----~~~~~~~  241 (343)
T 2yhw_A          173 IIHQHELIHGSSFCAAELGHLVVSLXGPDCSCGSHGCIE------AYASGMALQREAKKLHDE-DLLLV----EGMSVPK  241 (343)
T ss_dssp             EEETTEECCCTTSCTTCGGGCBCCC--CBCTTSCBSBHH------HHHSHHHHHHHHHHHHHT-TCSCC----TTCCC--
T ss_pred             EEECCEEecCCCCcccccCCEEEccCCCcCCCCCCCcHH------HhcCHHHHHHHHHHhhcc-ccccc----ccccccc
Confidence            999999987     79999998764 5556665433210      011122333322222110 00000    0000000


Q ss_pred             HHhchhHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhcccccccEEEEcchh
Q 020972          236 RIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEGVTYTKILKEKVPLLMENILF  303 (319)
Q Consensus       236 ~~a~~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~la~li~~l~~~~~~~~~~~~~~~~~~ivl~Gg~~  303 (319)
                      .....++.|+++|++||+.|++++++++++|+.+++++++.|||              +.|||+|+++
T Consensus       242 ~~~~~~~~v~~~a~~gd~~a~~il~~~~~~La~~i~~l~~~l~P--------------~~IvlgG~i~  295 (343)
T 2yhw_A          242 DEAVGALHLIQAAKLGNAKAQSILRTAGTALGLGVVNILHTMNP--------------SLVILSGVLA  295 (343)
T ss_dssp             --CCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHTCC--------------SEEEEESTTH
T ss_pred             cccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhCC--------------CEEEEeCCcH
Confidence            00123678999999999999999999999999999999999998              4799999987

>2aa4_A Mannac kinase, putative N-acetylmannosamine kinase; sugar methabolism, structural genomics, PSI, protein structure initiative; 2.20A {Escherichia coli} SCOP: c.55.1.10 c.55.1.10

Probab=100.00  E-value=3.3e-33  Score=256.15  Aligned_cols=230  Identities=15%  Similarity=0.104  Sum_probs=174.5

Q ss_pred             EEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceEEEee
Q 020972           23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV  102 (319)
Q Consensus        23 ~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Igig~  102 (319)
                      |+||||+|+|+++++++|.         +|+++.+.+.++.+.  .+++++++.|.+.+++++.       ++.+||||+
T Consensus         2 ~~lgidiggt~~~~~l~d~---------~g~il~~~~~~~~~~--~~~~~~~~~i~~~i~~~~~-------~~~~igi~~   63 (289)
T 2aa4_A            2 TTLAIDIGGTKLAAALIGA---------DGQIRDRRELPTPAS--QTPEALRDALSALVSPLQA-------HAQRVAIAS   63 (289)
T ss_dssp             CEEEEEECSSEEEEEEECT---------TCCEEEEEEEECCSS--CCHHHHHHHHHHHHTTTGG-------GCSEEEEEE
T ss_pred             eEEEEEeCCCEEEEEEECC---------CCCEEEEEEecCCCC--CCHHHHHHHHHHHHHHHHh-------hCCEEEEEe
Confidence            6899999999999999999         999999888765332  3688888888888776643       345899999


Q ss_pred             cCCCCchh-------------HHHHHHHHHhhCCCCceEEEeCcHHHHHHhhc-C----CCCCeEEEEECccceeEeEec
Q 020972          103 SGVNHPTD-------------QQRILNWLRDIFPGNVRLYVHNDALAALASGT-M----GKLHGCVLIAGTGTIAYGFTE  164 (319)
Q Consensus       103 pG~~~~~~-------------~~~l~~~L~~~~~~~~pv~v~NDa~aa~~g~~-~----g~~~~v~v~~GTGigg~gii~  164 (319)
                      ||+++++.             +.+|++.|+++|+  .||+++||+|++++++. +    +. +++|+++|||+ |+|++.
T Consensus        64 pG~vd~~~g~v~~~~~~~~w~~~~l~~~l~~~~~--~pv~v~NDa~aaa~~e~~~g~~~~~-~~v~l~~GtGi-G~gii~  139 (289)
T 2aa4_A           64 TGIIRDGSLLALNPHNLGGLLHFPLVKTLEQLTN--LPTIAINDAQAAAWAEFQALDGDIT-DMVFITVSTGV-GGGVVS  139 (289)
T ss_dssp             SSEEETTEEECSSGGGGGGGTTCCHHHHHHHHHC--SCEEEEEHHHHHHHHHHHTSCTTCC-CEEEEEESSSE-EEEEEE
T ss_pred             ccceeCCCCEEEeCCCCCcccCCChHHHHHHHHC--CCEEEechHHHHHHHHHHhCCCCCc-eEEEEEeCccE-EEEEEE
Confidence            99965421             2478999999997  89999999999999873 2    34 99999999998 558999


Q ss_pred             CCcEEe-----eCCCCCccCCcCCh-HHHHHHHHHHHHHHhcCCCCCchhHHHHHHHcCCCChhhHHHHhccCCChHHHh
Q 020972          165 DGRDAR-----AAGAGPILGDWGSG-YGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWARIA  238 (319)
Q Consensus       165 dG~~~r-----aGg~Ghl~gd~Gsa-~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a  238 (319)
                      ||++++     +|||||+..+.++. ++||+.                   .+++...   +...+.+.+...    ...
T Consensus       140 ~G~l~~G~~g~aGE~Gh~~~~~~g~~c~cG~~-------------------gcle~~~---s~~~l~~~~~~~----~~~  193 (289)
T 2aa4_A          140 GCKLLTGPGGLAGHIGHTLADPHGPVCGCGRT-------------------GCVEAIA---SGRGIAAAAQGE----LAG  193 (289)
T ss_dssp             TTEEECCTTSCCCCGGGSBSCTTSCBCTTSCB-------------------SBHHHHH---SHHHHHHTCCGG----GTT
T ss_pred             CCEEeeCCCCCCccCCcEEECCCCCcCCCCCc-------------------hhHHHHh---CHHHHHHHHHHh----ccC
Confidence            999986     89999998865432 233221                   1222222   233333322110    001


Q ss_pred             chhHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhcccccccEEEEcchhhhcHHHHHHHHhh
Q 020972          239 ALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEGVTYTKILKEKVPLLMENILFLLSWLVVFLKLIE  316 (319)
Q Consensus       239 ~~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~la~li~~l~~~~~~~~~~~~~~~~~~ivl~Gg~~~~~~~~~~~~~~~  316 (319)
                      ...+.+++++++||+.|++++++++++|+..++++++.|||              +.|||+|+++ . .+.|++++.+
T Consensus       194 ~~~~~v~~~a~~gd~~a~~i~~~~~~~L~~~i~~l~~~l~p--------------~~ivlgG~~~-~-~~~~~~~l~~  255 (289)
T 2aa4_A          194 ADAKTIFTRAGQGDEQAQQLIHRSARTLARLIADIKATTDC--------------QCVVVGGSVG-L-AEGYLALVET  255 (289)
T ss_dssp             CCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHCC--------------SEEEEEHHHH-T-STTHHHHHHH
T ss_pred             CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhcCC--------------CEEEEeCccc-c-cHHHHHHHHH
Confidence            23678999999999999999999999999999999999998              4799999988 3 4667777664

>2gup_A ROK family protein; sugar kinase, streptococcus pneumoniae TIGR4, AP sucrose, structural genomics, PSI; HET: SUC; 2.01A {Streptococcus pneumoniae} SCOP: c.55.1.10 c.55.1.10

Probab=99.98  E-value=1.4e-31  Score=245.71  Aligned_cols=224  Identities=12%  Similarity=0.072  Sum_probs=166.6

Q ss_pred             EEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceEEEee
Q 020972           23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV  102 (319)
Q Consensus        23 ~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Igig~  102 (319)
                      ++||||+|+|+++++++|.         +|+++.+.+.++.    .+++++++.+.+.+++         .++.+||||+
T Consensus         5 ~~lgidiggt~i~~~l~d~---------~g~il~~~~~~~~----~~~~~~~~~i~~~i~~---------~~i~gigi~~   62 (292)
T 2gup_A            5 TIATIDIGGTGIKFASLTP---------DGKILDKTSISTP----ENLEDLLAWLDQRLSE---------QDYSGIAMSV   62 (292)
T ss_dssp             CEEEEEEETTEEEEEEECT---------TCCEEEEEEECCC----SSHHHHHHHHHHHHTT---------SCCSEEEEEE
T ss_pred             EEEEEEECCCEEEEEEECC---------CCCEEEEEEEeCC----CCHHHHHHHHHHHHHh---------CCCcEEEEEe
Confidence            5999999999999999999         9999998877542    3577777766665543         3688999999


Q ss_pred             cCCCCchh-------------HHHHHHHHHhhCCCCceEEEeCcHHHHHHhhc---CCCCCeEEEEECccceeEeEecCC
Q 020972          103 SGVNHPTD-------------QQRILNWLRDIFPGNVRLYVHNDALAALASGT---MGKLHGCVLIAGTGTIAYGFTEDG  166 (319)
Q Consensus       103 pG~~~~~~-------------~~~l~~~L~~~~~~~~pv~v~NDa~aa~~g~~---~g~~~~v~v~~GTGigg~gii~dG  166 (319)
                      ||+++++.             +.+|++.| ++|+  +||+++||+|++++++.   ++.++++|+++|||++ +|++.||
T Consensus        63 pG~vd~~~g~v~~~~~~~~~~~~~l~~~l-~~~~--~pv~v~NDa~aaa~~e~~~~~~~~~~v~l~~GtGiG-~giv~~G  138 (292)
T 2gup_A           63 PGAVNQETGVIDGFSAVPYIHGFSWYEAL-SSYQ--LPVHLENDANCVGLSELLAHPELENAACVVIGTGIG-GAMIING  138 (292)
T ss_dssp             SSEECTTTCBEESCCSSGGGSSSBHHHHT-GGGC--CCEEEEEHHHHHHHHHHHHCTTCSSEEEEEESSSEE-EEEEETT
T ss_pred             cCcccCCCCEEEecCCCCcccCCCHHHHH-HHcC--CCEEEechHHHHHHHHHHhcCCCCeEEEEEECCceE-EEEEECC
Confidence            99976421             25789999 8997  89999999999999975   4678999999999985 5899999


Q ss_pred             cEEe-----eCCCCCccCCcCChHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHcCCCChhhHHHHhccCCChHHHhchh
Q 020972          167 RDAR-----AAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWARIAALV  241 (319)
Q Consensus       167 ~~~r-----aGg~Ghl~gd~Gsa~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~  241 (319)
                      ++++     +|+|||+..+.++                  +.     ..+++...   +...+.+.+.......  ....
T Consensus       139 ~l~~G~~g~aGEiGh~~~~~~~------------------~~-----~gcle~~~---s~~~l~~~~~~~~~~~--~~~~  190 (292)
T 2gup_A          139 RLHRGRHGLGGEFGYMTTLAPA------------------EK-----LNNWSQLA---STGNMVRYVIEKSGHT--DWDG  190 (292)
T ss_dssp             EEECCTTSCTTCGGGCBSSCCS------------------SS-----CCBHHHHH---SHHHHHHHHHHHHSSC--CCCH
T ss_pred             EEEecCCCCCccceeEEeccCC------------------CC-----CCcHHHhc---CHHHHHHHHHHhhCCC--CCCH
Confidence            9987     4566666554311                  00     01122222   2333333322100000  0135


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhcccccccEEEEcchhhhcHHHHHHHHhh
Q 020972          242 PVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEGVTYTKILKEKVPLLMENILFLLSWLVVFLKLIE  316 (319)
Q Consensus       242 ~~v~~~A~~GD~~A~~il~~a~~~Lg~~la~li~~l~~~~~~~~~~~~~~~~~~ivl~Gg~~~~~~~~~~~~~~~  316 (319)
                      +.+++++++||+.|++++++++++|+.+++++++.|||              +.|||+|+++ . .+.|++++.+
T Consensus       191 ~~v~~~a~~gd~~a~~i~~~~~~~L~~~i~~l~~~l~p--------------~~IvlgG~i~-~-~~~~~~~l~~  249 (292)
T 2gup_A          191 RKIYQEAAAGNILCQEAIERMNRNLAQGLLNIQYLIDP--------------GVISLGGSIS-Q-NPDFIQGVKK  249 (292)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHCC--------------SEEEEESGGG-G-CHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhCC--------------CEEEEeCccc-c-chHHHHHHHH
Confidence            78999999999999999999999999999999999998              4799999997 4 5777777765

>3mcp_A Glucokinase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, transferase; 3.00A {Parabacteroides distasonis}

Probab=99.97  E-value=1.9e-31  Score=252.36  Aligned_cols=233  Identities=16%  Similarity=0.108  Sum_probs=171.0

Q ss_pred             cCCCcEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEE-ecCCCCccccCHHHHHHHHHH---HHHHHHHHcCCCcc
Q 020972           18 SGGREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARA-AAGCSNHNSVGEDAARETIEK---VMADALLKSGSNRS   93 (319)
Q Consensus        18 ~~m~~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~-~~~~~~~~~~~~~~~~~~i~~---~i~~~l~~~~~~~~   93 (319)
                      +|...|+||||+|+|+++++++|          +|+++.+. +.+. ..  .+++++++.+.+   .+++++.      .
T Consensus         5 n~d~~~~lgiDIGgt~i~~~l~d----------~G~il~~~~~~~~-~~--~~~~~~l~~i~~~~~~i~~~~~------~   65 (366)
T 3mcp_A            5 TNDNRIVMTLDAGGTNFVFSAIQ----------GGKEIADPVVLPA-CA--DCLDKCLGNLVEGFKAIQAGLP------E   65 (366)
T ss_dssp             TTCCCEEEEEECSSSEEEEEEEE----------TTEECSCCEEEEC-CT--TCHHHHHHHHHHHHHHHHTTCS------S
T ss_pred             CCCCCEEEEEEECcceEEEEEEE----------CCEEEEEEEEEEC-CC--CCHHHHHHHHHHHHHHHHHHhh------c
Confidence            56678999999999999999999          37787766 5543 22  278888888888   5554432      4


Q ss_pred             ccceEEEeecCCCCch-----------h---HHHHHHHHHhhCCCCceEEEeCcHHHHHHhhc-CC--------------
Q 020972           94 AVRAVCLAVSGVNHPT-----------D---QQRILNWLRDIFPGNVRLYVHNDALAALASGT-MG--------------  144 (319)
Q Consensus        94 ~i~~Igig~pG~~~~~-----------~---~~~l~~~L~~~~~~~~pv~v~NDa~aa~~g~~-~g--------------  144 (319)
                      ++.+|||++||+++++           .   +++|++.|+++|+  +||+++||+|+++++|. +|              
T Consensus        66 ~i~gIGIavPG~Vd~~~G~i~~~~nlp~w~~~~~l~~~L~~~~g--~PV~veNDanaaAlgE~~~G~~p~~~~~l~~~g~  143 (366)
T 3mcp_A           66 APVAISFAFPGPADYQAGIIGDLPNFPSFRGGVALGPFLEDIFG--IPVFINNDGSLFAYGEALTGVLPEINRRLREAGS  143 (366)
T ss_dssp             CCCEEEEECCSSEETTTTEECCCTTCGGGTTCBCHHHHHHHHHC--SCEEEECHHHHHHHHHHHTSHHHHHHHHHHHTTC
T ss_pred             CCeEEEEEecceEeCCCCEEEeCCCcccccCCCCHHHHHHHHHC--CCEEEechhhHHHHHHHHhCCCcccccccccccc
Confidence            7999999999997632           1   2478999999997  89999999999999873 33              


Q ss_pred             ---CCCeEEEEECccceeEeEecCCcEEe-----eCCCCCccCCcCChHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHc
Q 020972          145 ---KLHGCVLIAGTGTIAYGFTEDGRDAR-----AAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTL  216 (319)
Q Consensus       145 ---~~~~v~v~~GTGigg~gii~dG~~~r-----aGg~Ghl~gd~Gsa~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~  216 (319)
                         .++++|+++|||+| +|++.||++++     +||+||+. +     .||+.          |         |++...
T Consensus       144 ~~~~~~~v~l~lGtGIG-~givi~G~l~~G~~g~AGEiGH~~-~-----~CG~~----------G---------clE~~~  197 (366)
T 3mcp_A          144 TKRYKNLLGVTLGTGFG-AGVVIDGELLRGDNAAGGYVWCLR-N-----KKYPE----------Y---------IVEESV  197 (366)
T ss_dssp             CCCCCEEEEEEESSSEE-EEEEETTEECCCTTSCTTCCTTSB-C-----SSCTT----------S---------BGGGTS
T ss_pred             cCCCCcEEEEEECCcce-EEEEECCEEecCCCCCCceeeccc-C-----CCCCC----------c---------ceeeee
Confidence               57899999999995 47999999987     56666665 2     11111          1         111111


Q ss_pred             CCCChhhHHHHhccCCChHHHhchhHHHHHHHH---cCC-HHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhcccc
Q 020972          217 ELSSPDELIGWTYVDPSWARIAALVPVVVSCAE---AGD-EVANKILQDSVEELALSVKAVVQRLSLSGEGVTYTKILKE  292 (319)
Q Consensus       217 ~~~~~~~l~~~~~~~~~~~~~a~~~~~v~~~A~---~GD-~~A~~il~~a~~~Lg~~la~li~~l~~~~~~~~~~~~~~~  292 (319)
                         +...+.+.+........ ....+.|+++++   +|| +.|++++++++++||.+++++++.|||             
T Consensus       198 ---S~~al~~~~~~~~~~~~-~~~~~~i~~~a~~~~~gD~~~a~~~l~~~~~~Lg~~i~nl~~~ldP-------------  260 (366)
T 3mcp_A          198 ---SIRAVMRVYAERSGDAG-ARTPKEIFEIAEGIRPGNREAAIAAFEELGEMAGDALASAITLIDG-------------  260 (366)
T ss_dssp             ---SHHHHHHHHHHHSSCCS-CCCHHHHHHHHHTSSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHCS-------------
T ss_pred             ---cHHHHHHHHHHhhCCCC-CCCHHHHHHHHhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------------
Confidence               22333332210000000 012567899999   999 999999999999999999999999996             


Q ss_pred             cccEEEEcchhhhcHHHHHHHHhhc
Q 020972          293 KVPLLMENILFLLSWLVVFLKLIEG  317 (319)
Q Consensus       293 ~~~ivl~Gg~~~~~~~~~~~~~~~~  317 (319)
                        .|||+|++. ..++.|++++.+.
T Consensus       261 --~IviGGgi~-~~~~~~~~~l~~~  282 (366)
T 3mcp_A          261 --LIVIGGGLS-GASKYILPVLLKE  282 (366)
T ss_dssp             --EEEEESGGG-GGHHHHHHHHHHH
T ss_pred             --EEEEEChhh-hchHHHHHHHHHH
Confidence              599999998 7899999988763

>1sz2_A Glucokinase, glucose kinase; ATP-dependent, glucose binding, transferase; HET: MSE BGC; 2.20A {Escherichia coli} SCOP: c.55.1.7 PDB: 1q18_A*

Probab=99.97  E-value=9.5e-29  Score=231.28  Aligned_cols=240  Identities=13%  Similarity=-0.035  Sum_probs=159.9

Q ss_pred             CCcEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceEE
Q 020972           20 GREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVC   99 (319)
Q Consensus        20 m~~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Ig   99 (319)
                      .+.|+||||+|||+++++++|..        +|+++.+.+.++...  ..       +.+.+++++++.+   .++.+||
T Consensus        12 ~~~~~lgiDiGGT~i~~~l~dl~--------~g~i~~~~~~~~~~~--~~-------~~~~i~~~~~~~~---~~i~gig   71 (332)
T 1sz2_A           12 STKYALVGDVGGTNARLALCDIA--------SGEISQAKTYSGLDY--PS-------LEAVIRVYLEEHK---VEVKDGC   71 (332)
T ss_dssp             --CEEEEEEEETTEEEEEEEETT--------TCCEEEEEEEEGGGC--SC-------HHHHHHHHHHHSC---CCCCEEE
T ss_pred             CCCEEEEEEechhheEEEEEECC--------CCcEEEEEEecCCCc--CC-------HHHHHHHHHHhcC---CCccEEE
Confidence            35799999999999999999941        688887766543211  12       3344455555543   3688999


Q ss_pred             EeecCCCCchh--------HHHHHHHHHhhCCCCce-EEEeCcHHHHHHhhc---------------CCCCCeEEEEECc
Q 020972          100 LAVSGVNHPTD--------QQRILNWLRDIFPGNVR-LYVHNDALAALASGT---------------MGKLHGCVLIAGT  155 (319)
Q Consensus       100 ig~pG~~~~~~--------~~~l~~~L~~~~~~~~p-v~v~NDa~aa~~g~~---------------~g~~~~v~v~~GT  155 (319)
                      ||+||+++...        .++ .+.|+++|+  .| |+|+||+|+++++|.               ++.++++||++||
T Consensus        72 i~~pG~vd~~~~~~~nl~w~~~-~~~l~~~~~--~p~V~v~NDanaaalgE~~~~~~~~~~~g~g~~~~~~~~~~v~~GT  148 (332)
T 1sz2_A           72 IAIACPITGDWVAMTNHTWAFS-IAEMKKNLG--FSHLEIINDFTAVSMAIPMLKKEHLIQFGGAEPVEGKPIAVYGAGT  148 (332)
T ss_dssp             EEESSCCCSSEECCSSSCCCEE-HHHHHHHHT--CSEEEEEEHHHHHHHHGGGCCGGGEEECSSCCCCTTCCEEEEEESS
T ss_pred             EEEeCceeCCEEeeeCCCCcCC-HHHHHHHhC--CCcEEEEeCHhHHhccccccChhhheecCCCCCCCCCcEEEEEcCc
Confidence            99999987421        135 578899997  87 999999999999984               2347899999999


Q ss_pred             cceeEeEecCCc---EEeeCCCCCccCCcCChHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHcCCCChhhHHHHhcc--
Q 020972          156 GTIAYGFTEDGR---DARAAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYV--  230 (319)
Q Consensus       156 Gigg~gii~dG~---~~raGg~Ghl~gd~Gsa~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~~~~~l~~~~~~--  230 (319)
                      |+|+ |+++||+   ...+||+||+.-+.....++-.  ++. .....++.|        .|.+.  +...+.+.+..  
T Consensus       149 GiG~-giv~~g~~G~~g~agE~GH~~v~~~~~~~~~l--~~~-~c~~~g~gc--------lE~~~--S~~~l~~~~~~~~  214 (332)
T 1sz2_A          149 GLGV-AHLVHVDKRWVSLPGEGGHVDFAPNSEEEAII--LEI-LRAEIGHVS--------AERVL--SGPGLVNLYRAIV  214 (332)
T ss_dssp             SEEE-EEEEEETTEEEEEECCGGGSBCCCCSHHHHHH--HHH-HHHHSSSCB--------GGGTS--SHHHHHHHHHHHH
T ss_pred             cceE-EEEecCCCCeeeCCCCccccCcCCCChHHHHH--HHH-HHhccCCcc--------hhhhc--cHHHHHHHHHHHh
Confidence            9955 7888875   2348999998765443221110  000 000112111        11111  22333222110  


Q ss_pred             --CCChHHHhchhHHHHHHHHcC-CHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhccccccc-EEEEcchhhhc
Q 020972          231 --DPSWARIAALVPVVVSCAEAG-DEVANKILQDSVEELALSVKAVVQRLSLSGEGVTYTKILKEKVP-LLMENILFLLS  306 (319)
Q Consensus       231 --~~~~~~~a~~~~~v~~~A~~G-D~~A~~il~~a~~~Lg~~la~li~~l~~~~~~~~~~~~~~~~~~-ivl~Gg~~~~~  306 (319)
                        ... ......++.|+++|++| |+.|++++++++++||..++++++.|||              +. |||+||++...
T Consensus       215 ~~~~~-~~~~~~~~~i~~~a~~G~D~~A~~~~~~~~~~Lg~~i~~l~~~l~P--------------~~gvvigGGi~~~~  279 (332)
T 1sz2_A          215 KADNR-LPENLKPKDITERALADSCTDCRRALSLFCVIMGRFGGNLALNLGT--------------FGGVFIAGGIVPRF  279 (332)
T ss_dssp             HHTTC-CCCCCCHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHTC--------------TTEEEEECSSSGGG
T ss_pred             hccCC-CccCCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC--------------CeEEEEEChhhhhH
Confidence              000 00011367899999999 9999999999999999999999999998              35 99999998444


Q ss_pred             HHHHH
Q 020972          307 WLVVF  311 (319)
Q Consensus       307 ~~~~~  311 (319)
                      +++|+
T Consensus       280 ~~~l~  284 (332)
T 1sz2_A          280 LEFFK  284 (332)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            66665

>2q2r_A Glucokinase 1, putative; ATPase hexose kinase family, transferase; HET: BGC ADP; 2.10A {Trypanosoma cruzi}

Probab=99.96  E-value=1.5e-29  Score=240.30  Aligned_cols=249  Identities=14%  Similarity=0.015  Sum_probs=173.5

Q ss_pred             cEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceEEEe
Q 020972           22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLA  101 (319)
Q Consensus        22 ~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Igig  101 (319)
                      .|+||||+|||+++++++|...     ..+|+++.+.+..++    .+++.+++.|.+.++++....   +.++.+||||
T Consensus        29 ~~~lgiDiGgt~i~~~l~d~~~-----~~~g~il~~~~~~~~----~~~~~~~~~i~~~i~~~~~~~---~~~i~gigi~   96 (373)
T 2q2r_A           29 PLTFVGDVGGTSARMGFVREGK-----NDSVHACVTRYSMKR----KDITEIIEFFNEIIELMPASV---MKRVKAGVIN   96 (373)
T ss_dssp             CEEEEEEECSSEEEEEEEEECG-----GGCEEEEEEEEECTT----CBGGGHHHHHHHHHHHSCHHH---HTTEEEEEEE
T ss_pred             CeEEEEEEccccEEEEEEeccc-----CCCccEEEEeeecCC----CCHHHHHHHHHHHHHHHhhcc---cccccEEEEE
Confidence            5899999999999999998500     003788887762232    256777778877777654432   2468899999


Q ss_pred             ecCCCCch---------hH-HHHHHHHHhhCCCCc-eEEEeCcHHHHHHh---------------hc-C-----------
Q 020972          102 VSGVNHPT---------DQ-QRILNWLRDIFPGNV-RLYVHNDALAALAS---------------GT-M-----------  143 (319)
Q Consensus       102 ~pG~~~~~---------~~-~~l~~~L~~~~~~~~-pv~v~NDa~aa~~g---------------~~-~-----------  143 (319)
                      +||+++..         .+ +++++.+++.|+  . ||+++||+|+++++               +. +           
T Consensus        97 ~pG~vd~g~v~~~~~~~~~~~~l~~~l~~~~~--~~pv~v~NDa~aaalge~~l~~~~~~~~~~~E~~~~~~~~~~~~~~  174 (373)
T 2q2r_A           97 VPGPVTGGAVGGPFNNLKGIARLSDYPKALFP--PGHSAILNDLEAGGFGVLAVSDAHVFSEYFGVMWEGTQWRTCEQEP  174 (373)
T ss_dssp             ESSCEETTTEECCCSSSBSCEEGGGSCTTTSC--TTSEEEEEHHHHHHHHHHHHHHTTCHHHHEEEEECCTTTTTTCSSC
T ss_pred             eeccccCCEEeccCCCCCCcCCHHHHHHHhcC--CCCEEEEccHhHHhccccccChhhhccccchhhcccccccccccCC
Confidence            99997541         12 377888888787  7 99999999999998               43 2           


Q ss_pred             -C----CCCeEEEEECccceeEeEecCCcEEe-----eCCCCCccCCcCChHHHHHHHHHHHHHHhcCCCCCchhHHHHH
Q 020972          144 -G----KLHGCVLIAGTGTIAYGFTEDGRDAR-----AAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNIL  213 (319)
Q Consensus       144 -g----~~~~v~v~~GTGigg~gii~dG~~~r-----aGg~Ghl~gd~Gsa~~iG~~~~~~~~~~~dg~~~~~~l~~~~~  213 (319)
                       |    .++++|+++|||+| +|++.||++++     +|||||+..+.++.|++|+..++..    ....       +++
T Consensus       175 ~g~~~~~~~~~~v~~GTGiG-~gii~~g~l~~G~~~~aGE~Gh~~~~~~~~c~cg~~l~~~~----~~~g-------~lE  242 (373)
T 2q2r_A          175 AGSVIGRGRCLVLAPGTGLG-SSLIYYNPPMNQHIVVPLELGSQTLPMRKDIDYIQTLHAEL----KLFP-------NYE  242 (373)
T ss_dssp             TTSSCCSSCEEEEEESSSEE-EEEEEECC---CEEEEEECGGGSBCCCSSCHHHHHHHHHHH----TSCC-------BHH
T ss_pred             CcCcCCCCCEEEEEeCCcee-EEEEecCcccCCCcccccccceeecCCCCCcchhHHHHHHh----hccc-------cHh
Confidence             3    37899999999995 57999998764     8999999887555589998654321    1111       122


Q ss_pred             HHcCCCChhhHHHHhcc--CCChHHHhchhHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhccc
Q 020972          214 STLELSSPDELIGWTYV--DPSWARIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEGVTYTKILK  291 (319)
Q Consensus       214 ~~~~~~~~~~l~~~~~~--~~~~~~~a~~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~la~li~~l~~~~~~~~~~~~~~  291 (319)
                      ...   +...+.+....  .....  ...++.|+++|++||+.|++++++++++|+..++++++.|||            
T Consensus       243 ~~~---S~~~l~~~~~~~~~~~~~--~~~~~~i~~~a~~gD~~a~~~l~~~~~~L~~~i~~l~~~l~p------------  305 (373)
T 2q2r_A          243 NMV---SGAGLEFHYRQVVRGSRP--PCSAGEIAKLASEGDANACKAMKKYHEYLMRVGSEASMALLP------------  305 (373)
T ss_dssp             HHS---SHHHHHHHHHHHHTTSSC--CCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHCC------------
T ss_pred             Hhc---CHHHHHHHHHHHhcCCCC--CCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHCC------------
Confidence            222   23333222110  00000  013678999999999999999999999999999999999998            


Q ss_pred             ccccEEEEcchhhhcHHHHHH--HHhh
Q 020972          292 EKVPLLMENILFLLSWLVVFL--KLIE  316 (319)
Q Consensus       292 ~~~~ivl~Gg~~~~~~~~~~~--~~~~  316 (319)
                        +.|||+||.+... +.|++  ++.+
T Consensus       306 --~~IvlgGG~~~~~-~~~~~~~~i~~  329 (373)
T 2q2r_A          306 --LTIVLVGDNIVNN-AFFYRNPQNLK  329 (373)
T ss_dssp             --SEEEECSHHHHHT-HHHHHSHHHHH
T ss_pred             --CEEEEeCChHhCc-hhhhcchhHHH
Confidence              3688888855355 77777  5443

>1saz_A Probable butyrate kinase 2; askha (acetate and sugar kinases, HSC70, actin) superfamily, acetate kinase, isobutyrate kinase; HET: ACP; 2.50A {Thermotoga maritima} SCOP: c.55.1.2 c.55.1.2 PDB: 1x9j_A*

Probab=99.95  E-value=9.2e-29  Score=235.62  Aligned_cols=242  Identities=15%  Similarity=0.123  Sum_probs=172.9

Q ss_pred             cEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHH---HHHHHHHHHHcCCCccccceE
Q 020972           22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETI---EKVMADALLKSGSNRSAVRAV   98 (319)
Q Consensus        22 ~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i---~~~i~~~l~~~~~~~~~i~~I   98 (319)
                      +++||||+|+|+++++++|.         + +++.+.+.+.......+++.+++.+   .+.+.+++++.+....++.+|
T Consensus         2 ~~vlgidiGgt~ik~al~d~---------~-~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~i~gI   71 (381)
T 1saz_A            2 FRILTINPGSTSTKLSIFED---------E-RMVKMQNFSHSPDELGRFQKILDQLEFREKIARQFVEETGYSLSSFSAF   71 (381)
T ss_dssp             CEEEEEEECSSEEEEEEEET---------T-EEEEEEEEECCHHHHHTCSSGGGGHHHHHHHHHHHHHTTTCCGGGCSEE
T ss_pred             CeEEEEECCccceeEEEEec---------c-hheeeeecccCcccccchhhHHHHHHHHHHHHHHHHHHcCCCccCceEE
Confidence            48999999999999999998         6 8888877654211000223344555   777888887776666689999


Q ss_pred             EEeecCCCCchh--------------------------HHHHHHHHHhhCCCCceEEEeCcHH---------HHHH----
Q 020972           99 CLAVSGVNHPTD--------------------------QQRILNWLRDIFPGNVRLYVHNDAL---------AALA----  139 (319)
Q Consensus        99 gig~pG~~~~~~--------------------------~~~l~~~L~~~~~~~~pv~v~NDa~---------aa~~----  139 (319)
                       +++||++++..                          ..++.+.|++.|+  +||+|+||+|         ++++    
T Consensus        72 -i~~pG~vd~~~G~~~~i~~~~~~~l~~~~~~~~~~nl~~~l~~~l~~~~~--~Pv~v~NDan~~~~~~~a~aaalp~~~  148 (381)
T 1saz_A           72 -VSRGGLLDPIPGGVYLVDGLMIKTLKSGKNGEHASNLGAIIAHRFSSETG--VPAYVVDPVVVDEMEDVARVSGHPNYQ  148 (381)
T ss_dssp             -EEECCSCSCBCSSEEECCHHHHHHHHHTTTCCCTTHHHHHHHHHHHHHHC--CCEEEESCTTBCCCCGGGTBCSSTTCB
T ss_pred             -EecCCCCCCCCCceEecCHHHHHHHHhcccccChhhhhHHHHHHHHHhcC--CCEEEeCCCccccCcHHHHHcCCcchh
Confidence             99999876421                          3578888999997  8999999999         8877    


Q ss_pred             -------------hh-c-----CCCC--CeEEEEECccceeEeEecCCcEEe-----eCCCCCccCCc-CChHHHHH--H
Q 020972          140 -------------SG-T-----MGKL--HGCVLIAGTGTIAYGFTEDGRDAR-----AAGAGPILGDW-GSGYGIAA--Q  190 (319)
Q Consensus       140 -------------g~-~-----~g~~--~~v~v~~GTGigg~gii~dG~~~r-----aGg~Ghl~gd~-Gsa~~iG~--~  190 (319)
                                   ++ .     ++.+  +++++++|||+++ |++.||++++     +|+ ||+..+. |. +.+|.  .
T Consensus       149 r~~gfhgls~~~~aE~~~~g~~~~~~~~~~v~~~lGtGiG~-g~i~~G~~~~G~~g~agE-Gh~~~~~~g~-c~cg~l~~  225 (381)
T 1saz_A          149 RKSIFHALNQKTVAKEVARMMNKRYEEMNLVVAHMGGGISI-AAHRKGRVIDVNNALDGD-GPFTPERSGT-LPLTQLVD  225 (381)
T ss_dssp             CCCCSCHHHHHHHHHHHHHHTTCCGGGCEEEEEEESSSEEE-EEEETTEEEEECCGGGTC-SSCCSSCCCS-CCHHHHHH
T ss_pred             hhcccccccHHHHHHHHHHhcCCCCccCCEEEEEeCCCcEE-EEEECCEEEEecCCCCCC-cceeeccCCC-CCCcHHHH
Confidence                         66 2     2345  8999999999955 7889999987     567 8887643 32 44443  2


Q ss_pred             HHHHHHHHhcCCCCCchhHHHHHHHcCCCChhhHHHHhccCCChHHH--hchhHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 020972          191 ALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWARI--AALVPVVVSCAEAGDEVANKILQDSVEELAL  268 (319)
Q Consensus       191 ~~~~~~~~~dg~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--a~~~~~v~~~A~~GD~~A~~il~~a~~~Lg~  268 (319)
                      .+      .+...                +...+.+.+.........  ....+.|++++++||+.|++++++++++|+.
T Consensus       226 gc------~e~~~----------------S~~~l~~~~~~~~g~~~~~~~~~~~~i~~~a~~gd~~a~~~l~~~~~~la~  283 (381)
T 1saz_A          226 LC------FSGKF----------------TYEEMKKRIVGNGGLVAYLGTSDAREVVRRIKQGDEWAKRVYRAMAYQIAK  283 (381)
T ss_dssp             HH------TSSCC----------------CTTGGGSTTTTSCTHHHHHSCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HH------HHhCC----------------CHHHHHHHHHhccCccccccCCCHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            21      11111                222232222111000000  1236789999999999999999999999999


Q ss_pred             HHHHHHHHh--cccCCCcchhhcccccccEEEEcchhhhcHHHHHHHHhh
Q 020972          269 SVKAVVQRL--SLSGEGVTYTKILKEKVPLLMENILFLLSWLVVFLKLIE  316 (319)
Q Consensus       269 ~la~li~~l--~~~~~~~~~~~~~~~~~~ivl~Gg~~~~~~~~~~~~~~~  316 (319)
                      .++++++.|  ||              +.|||+||+. .+.+.+++++.+
T Consensus       284 ~i~~l~~~l~~~p--------------~~IvlgGgi~-~~~~~l~~~i~~  318 (381)
T 1saz_A          284 WIGKMAAVLKGEV--------------DFIVLTGGLA-HEKEFLVPWITK  318 (381)
T ss_dssp             HHHHHHHHTTTCC--------------SEEEEEEGGG-GCTTTHHHHHHH
T ss_pred             HHHHHHHHhcCCC--------------CEEEEeCcCc-cChHHHHHHHHH
Confidence            999999999  77              5899999998 566667777765

>1woq_A Inorganic polyphosphate/ATP-glucomannokinase; transferase; HET: BGC; 1.80A {Arthrobacter SP} SCOP: c.55.1.10 c.55.1.10

Probab=99.94  E-value=1.1e-26  Score=210.93  Aligned_cols=204  Identities=17%  Similarity=0.063  Sum_probs=150.5

Q ss_pred             cEEEEEEcCccceeEEEEeCccCCCCCCCC-CCeEEE-EecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceEE
Q 020972           22 EVILGLDGGTTSTVCICMPVISMSDSLPDP-LPVLAR-AAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVC   99 (319)
Q Consensus        22 ~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~-G~il~~-~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Ig   99 (319)
                      .|+||||+|+|+++++++|.         + |+++.+ .+.++ +. ..+++++++.+.+.+++++++... ..++.+||
T Consensus        12 ~~~lgidiggt~i~~~l~dl---------~~g~i~~~~~~~~~-~~-~~~~~~~~~~i~~~i~~~~~~~~~-~~~~~~ig   79 (267)
T 1woq_A           12 APLIGIDIGGTGIKGGIVDL---------KKGKLLGERFRVPT-PQ-PATPESVAEAVALVVAELSARPEA-PAAGSPVG   79 (267)
T ss_dssp             CCEEEEEECSSEEEEEEEET---------TTTEEEEEEEEEEC-CS-SCCHHHHHHHHHHHHHHHHTSTTC-CCTTCCEE
T ss_pred             CEEEEEEECCCEEEEEEEEC---------CCCeEEEEEEecCC-Cc-cCCHHHHHHHHHHHHHHHHHhccc-cCccceEE
Confidence            47999999999999999998         6 777743 34333 22 146888999999999988764331 23456899


Q ss_pred             EeecCCCCc-------h---h--HHHHHHHHHhhCCCCceEEEeCcHHHHHHhhc-----CCCC-CeEEEEECccceeEe
Q 020972          100 LAVSGVNHP-------T---D--QQRILNWLRDIFPGNVRLYVHNDALAALASGT-----MGKL-HGCVLIAGTGTIAYG  161 (319)
Q Consensus       100 ig~pG~~~~-------~---~--~~~l~~~L~~~~~~~~pv~v~NDa~aa~~g~~-----~g~~-~~v~v~~GTGigg~g  161 (319)
                      ||+||+++.       .   .  +.+|++.|+++|+  +||+++||+|+++++|.     ++.+ +++|+++|||+| +|
T Consensus        80 i~~pG~v~~g~v~~~~~l~~~w~~~~l~~~l~~~~~--~pV~v~NDanaaalaE~~~g~~~~~~~~~~~l~~GtGIG-~g  156 (267)
T 1woq_A           80 VTFPGIIQHGVVHSAANVDKSWLNTDIDALLTARLG--RPVEVINDADAAGLAEARYGAGAGVKGTVLVITLGTGIG-SA  156 (267)
T ss_dssp             EEESSCEETTEECCCTTSCGGGTTCBHHHHHHHHHT--SCEEEEEHHHHHHHHHHHHSTTTTCCSEEEEEEESSSEE-EE
T ss_pred             EEccceEcCCEEEeCCCCCCCCCCCCHHHHHHHHHC--CCEEEeehhHHHHHHHHHhCCCCCCCCcEEEEEECcceE-EE
Confidence            999998641       1   1  2578999999997  89999999999999874     2334 478999999984 58


Q ss_pred             EecCCcEEeeCCCCCccCCcCChHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHcCCCChhhHHHHhccCCChHHHhchh
Q 020972          162 FTEDGRDARAAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWARIAALV  241 (319)
Q Consensus       162 ii~dG~~~raGg~Ghl~gd~Gsa~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~  241 (319)
                      ++.||+++|.||+||+..+..                       |     ++.+.   +...+                 
T Consensus       157 iv~~G~l~~GgEiGh~~v~~~-----------------------~-----lE~~~---S~~~l-----------------  188 (267)
T 1woq_A          157 FIFDGKLVPNAELGHLEIDGH-----------------------D-----AETKA---SAVAR-----------------  188 (267)
T ss_dssp             EEETTEEETTCCGGGCEETTE-----------------------E-----HHHHH---SHHHH-----------------
T ss_pred             EEECCEEccCceeeeEEecCc-----------------------c-----HHHHh---CHHHH-----------------
Confidence            999999999999999875421                       0     11111   11110                 


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhcccccccEEEEcchhhhcHHHHHHHH
Q 020972          242 PVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEGVTYTKILKEKVPLLMENILFLLSWLVVFLKL  314 (319)
Q Consensus       242 ~~v~~~A~~GD~~A~~il~~a~~~Lg~~la~li~~l~~~~~~~~~~~~~~~~~~ivl~Gg~~~~~~~~~~~~~  314 (319)
                         .+   .     ...+++++++|+..++++++.|||              +.|||+|+++ ..++.|++++
T Consensus       189 ---~~---~-----~~~~~~~~~~l~~~l~~l~~~ldP--------------~~IvlgG~i~-~~~~~~~~~~  235 (267)
T 1woq_A          189 ---ER---D-----GLSWDEYSVLLQRYFSHVEFLFSP--------------ELFIVGGGIS-KRADEYLPNL  235 (267)
T ss_dssp             ---HH---T-----TCCHHHHHHHHHHHHHHHHHHHCC--------------SEEEEESGGG-GGGGGTGGGC
T ss_pred             ---hh---c-----chhHHHHHHHHHHHHHHHHHHcCC--------------CEEEEeChhh-cccHHHHHhh
Confidence               00   0     113678899999999999999998              4799999998 6777776654

>3lm2_A Putative kinase; structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-2, transf; HET: MSE; 1.70A {Agrobacterium tumefaciens}

Probab=99.94  E-value=2.5e-27  Score=209.75  Aligned_cols=190  Identities=12%  Similarity=0.001  Sum_probs=136.3

Q ss_pred             CCCcEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceE
Q 020972           19 GGREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAV   98 (319)
Q Consensus        19 ~m~~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~I   98 (319)
                      +|+.|++|||+|||+++  ++|.         +|++..  +.++. . ..+++++++.+.+.+++    .     ++.+|
T Consensus         3 ~~~~~~lgiDIGGT~i~--~~d~---------~g~~~~--~~~t~-~-~~~~~~~~~~i~~~i~~----~-----~i~gi   58 (226)
T 3lm2_A            3 AEDQTVLAIDIGGSHVK--IGLS---------TDGEER--KVESG-K-TMTGPEMVAAVTAMAKD----M-----TYDVI   58 (226)
T ss_dssp             GGGCCEEEEEECSSEEE--EEET---------TTCCEE--EEECC-T-TCCHHHHHHHHHHHTTT----C-----CCSEE
T ss_pred             CcCCEEEEEEECCCEEE--EEEC---------CCCEEE--EEECC-C-CCCHHHHHHHHHHHHHh----C-----CCCEE
Confidence            34568999999999999  4687         788733  33222 2 24677777766655432    2     68899


Q ss_pred             EEeecCCCCchh-------------HHHHHHHHHhhCCCCceEEEeCcHHHHHHhhcCCCCCeEEEEECccceeEeEecC
Q 020972           99 CLAVSGVNHPTD-------------QQRILNWLRDIFPGNVRLYVHNDALAALASGTMGKLHGCVLIAGTGTIAYGFTED  165 (319)
Q Consensus        99 gig~pG~~~~~~-------------~~~l~~~L~~~~~~~~pv~v~NDa~aa~~g~~~g~~~~v~v~~GTGigg~gii~d  165 (319)
                      ||++||+++++.             +.+|    +++|+  .||+++||+|++++++... ++++|+++|||+|+ |++.|
T Consensus        59 gi~~pG~Vd~~~~~~~~~nl~~~w~~~~l----~~~~~--~pv~v~NDanaaalge~~~-~~~~~l~~GtGiG~-gii~~  130 (226)
T 3lm2_A           59 AMGYPGPVVHNKPLREPVNLGEGWVGYDY----EGAFG--RPVRIVNDALMQAIGSYNG-GRMLFLGLGTGLGA-AMIVE  130 (226)
T ss_dssp             EEEESSCEETTEECSCCTTSCSCCTTCCH----HHHHT--SCEEEEEHHHHHHHHHCCS-SEEEEEEESSSEEE-EEEET
T ss_pred             EEEEEeEEECCeEEEECCcCCccccCCch----HHhcC--CeEEEEEHHHHHHHHHhhc-CcEEEEEeCCceEE-EEEEC
Confidence            999999976431             1234    45676  8999999999999998754 68999999999954 79999


Q ss_pred             CcEEeeCCCCCccCCcCChHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHcCCCChhhHHHHhccCCChHHHhchhHHHH
Q 020972          166 GRDARAAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWARIAALVPVVV  245 (319)
Q Consensus       166 G~~~raGg~Ghl~gd~Gsa~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~v~  245 (319)
                      |++++ ||+||+.-+.+                  +         |++.+.   +...                    +.
T Consensus       131 G~l~~-GEiGH~~v~~~------------------g---------clE~~~---s~~a--------------------l~  159 (226)
T 3lm2_A          131 NVAQP-MEIAHLPYRKG------------------K---------TYEHYV---SEAY--------------------RE  159 (226)
T ss_dssp             TEEEE-ECCTTSEEETT------------------E---------EHHHHT---CHHH--------------------HH
T ss_pred             CEEee-eeeeeEEecCC------------------C---------cHHHHh---CHHH--------------------HH
Confidence            99998 99999975431                  0         122222   1111                    11


Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhcccccccEEEEcchhhhcHHHHHHHHhh
Q 020972          246 SCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEGVTYTKILKEKVPLLMENILFLLSWLVVFLKLIE  316 (319)
Q Consensus       246 ~~A~~GD~~A~~il~~a~~~Lg~~la~li~~l~~~~~~~~~~~~~~~~~~ivl~Gg~~~~~~~~~~~~~~~  316 (319)
                      +.   ++       ++++++|++++++++++|||              +.|||+|++. +.++.|++++.+
T Consensus       160 ~~---~~-------~~~~~~L~~~la~l~~~~dP--------------~~IVlGG~~~-~~~~~~~~~i~~  205 (226)
T 3lm2_A          160 KK---GN-------AKWQKRVQDVVERLSAALEP--------------DEVVIGGGNV-ERLENLPPKCRR  205 (226)
T ss_dssp             HH---CH-------HHHHHHHHHHHHHHHHHHCC--------------SEEEEESGGG-GGCCCCCTTEEE
T ss_pred             HH---HH-------HHHHHHHHHHHHHHHHHHCC--------------CEEEEeChhh-hhhhHHHHHHHH
Confidence            11   11       57788999999999999998              5899999998 788877666544

>1bdg_A Hexokinase; phosphotransferase; HET: GLC; 2.60A {Schistosoma mansoni} SCOP: c.55.1.3 c.55.1.3

Probab=99.89  E-value=6.1e-22  Score=191.83  Aligned_cols=265  Identities=15%  Similarity=0.128  Sum_probs=167.8

Q ss_pred             CCcEEEEEEcCccceeEEEEeCccCCCCCCCCC-C----e-EEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCcc
Q 020972           20 GREVILGLDGGTTSTVCICMPVISMSDSLPDPL-P----V-LARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRS   93 (319)
Q Consensus        20 m~~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G-~----i-l~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~   93 (319)
                      ..+++|+||+|||++|++++++         +| +    + ..+.+.|+ +....+.+++++.|++.+++++++.+... 
T Consensus        66 E~G~~lalDlGGTn~Rv~~V~l---------~G~~~~~~i~~~~~~ip~-~~~~~~~~~lfd~Ia~~i~~~l~~~~~~~-  134 (451)
T 1bdg_A           66 ETGNFLALDLGGTNYRVLSVTL---------EGKGKSPRIQERTYCIPA-EKMSGSGTELFKYIAETLADFLENNGMKD-  134 (451)
T ss_dssp             CCEEEEEEEESSSSEEEEEEEE---------CC-CCCCEEEEEEECCCT-TTTTSBHHHHHHHHHHHHHHHHHHTTCCS-
T ss_pred             ccceEEEEEeCCCeEEEEEEec---------CCCCcceEEEEEEEecCC-cccCCCHHHHHHHHHHHHHHHHHhcCCCc-
Confidence            3578999999999999999999         77 5    4 34444443 32234678999999999999999877543 


Q ss_pred             ccceEEEeecCCCCc---hh----------------HHHHHHHHHhhC---CCCceE---EEeCcHHHHHHhhc-CCCCC
Q 020972           94 AVRAVCLAVSGVNHP---TD----------------QQRILNWLRDIF---PGNVRL---YVHNDALAALASGT-MGKLH  147 (319)
Q Consensus        94 ~i~~Igig~pG~~~~---~~----------------~~~l~~~L~~~~---~~~~pv---~v~NDa~aa~~g~~-~g~~~  147 (319)
                      +...+|+++|++++.   ..                +.++.+.|++.+   +  .||   .|.||+++++++++ .+.++
T Consensus       135 ~~~~lG~tfsfPv~q~~~~~G~l~~wtKgf~~~~~~g~dv~~~L~~al~r~~--l~v~v~al~NDtv~tlla~~y~~~~~  212 (451)
T 1bdg_A          135 KKFDLGFTFSFPCVQKGLTHATLVRWTKGFSADGVEGHNVAELLQTELDKRE--LNVKCVAVVNDTVGTLASCALEDPKC  212 (451)
T ss_dssp             SCEEEEEEECSCEEEETTTEEEECCCCTTCCCBTCTTSBHHHHHHHHHHTTT--CCEEEEEEECHHHHHHHHHHTTCTTE
T ss_pred             cccceEEEEeeEeccccCCCeEEeccccccCCCCCCCCcHHHHHHHHHHHcC--CCcceEEEEEchHHHHHHhcccCCCc
Confidence            347899999999764   11                236777777776   4  677   99999999999874 56778


Q ss_pred             eEEEEECccceeEeEecCCcE------------EeeCCCCCccCCcC-----------------------------ChHH
Q 020972          148 GCVLIAGTGTIAYGFTEDGRD------------ARAAGAGPILGDWG-----------------------------SGYG  186 (319)
Q Consensus       148 ~v~v~~GTGigg~gii~dG~~------------~raGg~Ghl~gd~G-----------------------------sa~~  186 (319)
                      .+.+++|||+++ +++.+++.            .-..+||+. ++++                             |+..
T Consensus       213 ~iglIlGTG~na-~yve~~~~i~~~~g~~~g~m~In~EwG~f-~~~~~~~~p~t~~D~~lD~~s~~pg~q~~Ek~~SG~y  290 (451)
T 1bdg_A          213 AVGLIVGTGTNV-AYIEDSSKVELMDGVKEPEVVINTEWGAF-GEKGELDCWRTQFDKSMDIDSLHPGKQLYEKMVSGMY  290 (451)
T ss_dssp             EEEEEESSSEEE-EEEEETTTCGGGCSCSSSEEEEECCGGGT-TTTSTTTTTCCHHHHHHHHTSSSTTSCTTHHHHSHHH
T ss_pred             EEEEEEeCCcce-EEEEcCccccCcCCCccCcEEEecCcccC-CCcccccCCCCcchhhhhhcCCCCCcccchhhhhhhH
Confidence            999999999966 68887754            234566654 1111                             2222


Q ss_pred             HHHHHHHHHHHHhc-CCCCCchhHHHHHHHcCCCChhhHHHHhccCCChHHHhchhHHHHHH-HH-----cCC-----HH
Q 020972          187 IAAQALTAVIRAYD-GRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWARIAALVPVVVSC-AE-----AGD-----EV  254 (319)
Q Consensus       187 iG~~~~~~~~~~~d-g~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~v~~~-A~-----~GD-----~~  254 (319)
                      +|...-....+..+ +..-.......+.+.+.++  ...++.+..+.. ..+ +.++.++++ +.     .+|     ++
T Consensus       291 Lgel~R~~l~~~~~~~~lf~~~~~~~l~~~~~l~--t~~ls~i~~d~~-~~~-~~~~~i~~~~~~~~~~~~~d~~~~~~v  366 (451)
T 1bdg_A          291 LGELVRHIIVYLVEQKILFRGDLPERLKVRNSLL--TRYLTDVERDPA-HLL-YNTHYMLTDDLHVPVVEPIDNRIVRYA  366 (451)
T ss_dssp             HHHHHHHHHHHHHHTTSSGGGCCCSGGGSTTCSC--TTHHHHHTTCCT-TCC-HHHHHHHHHTSCCSSCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcccccccccchHhhcCCCccc--hHHHhhhhccCc-cch-HHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence            22211110000000 0000000000000000110  011111111110 011 124667776 43     678     99


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhcccccccEEEEcchhhhcHHHHHHHHhh
Q 020972          255 ANKILQDSVEELALSVKAVVQRLSLSGEGVTYTKILKEKVPLLMENILFLLSWLVVFLKLIE  316 (319)
Q Consensus       255 A~~il~~a~~~Lg~~la~li~~l~~~~~~~~~~~~~~~~~~ivl~Gg~~~~~~~~~~~~~~~  316 (319)
                      |..|++++++++|.+++++++.++|            ++..|+++||++ +..+.|.+++.|
T Consensus       367 a~~V~~RaA~lla~~ia~i~~~~~~------------~~~~V~i~Ggv~-~~~~~~~~~l~~  415 (451)
T 1bdg_A          367 CEMVVKRAAYLAGAGIACILRRINR------------SEVTVGVDGSLY-KFHPKFCERMTD  415 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCC------------SEEEEEEESHHH-HHCTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCC------------CceEEEEeCchh-cCchhHHHHHHH
Confidence            9999999999999999999999998            345788999998 778888877765

>2yhx_A Hexokinase B; transferase(phosphoryl,alcohol acceptr); HET: OTG; 2.10A {Saccharomyces cerevisiae} SCOP: i.12.1.1 PDB: 1hkg_A

Probab=99.89  E-value=2.2e-22  Score=194.97  Aligned_cols=264  Identities=7%  Similarity=-0.025  Sum_probs=168.5

Q ss_pred             ccCCCcEEEEEEcCccceeEEEEeCccCCCCCCCCCCe---EEEEecCCC-CccccCHHHHHHHHHHHHHHHHHHcCCCc
Q 020972           17 ESGGREVILGLDGGTTSTVCICMPVISMSDSLPDPLPV---LARAAAGCS-NHNSVGEDAARETIEKVMADALLKSGSNR   92 (319)
Q Consensus        17 ~~~m~~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~i---l~~~~~~~~-~~~~~~~~~~~~~i~~~i~~~l~~~~~~~   92 (319)
                      +....+++||||+|||++|+++++.         +|++   +.+.+.+.. +....+.+++++.|.+.+++++++.+...
T Consensus        56 ~G~E~G~~laiDlGGTnirv~lV~~---------~G~~~~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~~~~~~~~~~  126 (457)
T 2yhx_A           56 SGAQAGSFLAIVMGGGDLEVILISL---------AGRQESSIXASRSLAAAMSTTAIPSDLWGNXAXSNAAFSSXEFSSX  126 (457)
T ss_dssp             CSCCCEEEEEEEECSSEEEEEEEEE---------ETTEEEEEEEEEECCTTTTSCSCTHHHHHHHHHHHHHHHHHHTSSC
T ss_pred             CCCccceEEEEEeCCCeEEEEEEEe---------CCCeeEEEeeEEEEcCCccCCCCHHHHHHHHHHHHHHHHhhccccc
Confidence            3344568999999999999999999         8988   444443321 11113678999999999999998754322


Q ss_pred             cc--cceEEEeecCC-CCch--------hHH------HHHHHHHhhC---CCCce---EEEeCcHHHHHHhhc-CCCCCe
Q 020972           93 SA--VRAVCLAVSGV-NHPT--------DQQ------RILNWLRDIF---PGNVR---LYVHNDALAALASGT-MGKLHG  148 (319)
Q Consensus        93 ~~--i~~Igig~pG~-~~~~--------~~~------~l~~~L~~~~---~~~~p---v~v~NDa~aa~~g~~-~g~~~~  148 (319)
                      .+  ..++++++|+. .+..        +.+      ++.+.|++.+   +  .|   |.|+||+++++++++ ++.++.
T Consensus       127 ~~~~~lGi~fs~P~~q~~~~~g~l~~wtKgf~i~~~~~v~~~L~~~l~r~g--lpv~vval~NDa~~tll~e~~~~~~~~  204 (457)
T 2yhx_A          127 AGSVPLGFTFXEAGAKEXVIKGQITXQAXAFSLAXLXKLISAMXNAXFPAG--DXXXSVADIXDSHGILXXVNYTDAXIK  204 (457)
T ss_dssp             SSCEEEEEECCSCCCCSBTTCCBCSSCCTTCCCSSCSSBHHHHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHHCTTEE
T ss_pred             ccccceeeEEEEEEEEeecCceEEEeeccCCCcchhHHHHHHHHHhHhhcC--CcceeEEEEecchhhccchhhcCCccE
Confidence            23  34555555554 2211        133      7888888877   5  67   999999999999874 677899


Q ss_pred             EEEEECccceeEeEecCC----c------------EEeeCCCCCccCCcCChHHHHHHHHHHHHHHhcCCCCCchhHHHH
Q 020972          149 CVLIAGTGTIAYGFTEDG----R------------DARAAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNI  212 (319)
Q Consensus       149 v~v~~GTGigg~gii~dG----~------------~~raGg~Ghl~gd~Gsa~~iG~~~~~~~~~~~dg~~~~~~l~~~~  212 (319)
                      +++++|||+++ +++.++    +            ..-.+||||+- +++.-  +-....+.   ..|+..+.|+  +++
T Consensus       205 iglilGTGvgg-~~i~~~~~i~kl~~~~~~~~~g~~~in~EwG~f~-~~~~~--lp~t~~D~---~lD~~s~~pG--q~f  275 (457)
T 2yhx_A          205 MGIIFGSGVNA-AYWCDSTXIGDAADGGXXGGAGXMXICCDQSSFR-KAFPS--LPQIXYLX---TLNXXSPXAX--KTF  275 (457)
T ss_dssp             EEEEESSSEEE-EEEECGGGSSCTTSCSSSCSSCCEEEECCCTTTT-TTCSS--SCCCHHHH---HHHHHSSCSC--CHH
T ss_pred             EEEEECcEEEE-EEEECCCcccccccccccccCCceEEEEEcccCC-CCCCc--CCcccccc---ccccccCchH--HHH
Confidence            99999999966 688776    3            33488999973 32211  00001010   1111112222  233


Q ss_pred             HHHcCCCChhhHHHH--------------------------------hccCCChHHHhchhHHHH-HHHH----cCC---
Q 020972          213 LSTLELSSPDELIGW--------------------------------TYVDPSWARIAALVPVVV-SCAE----AGD---  252 (319)
Q Consensus       213 ~~~~~~~~~~~l~~~--------------------------------~~~~~~~~~~a~~~~~v~-~~A~----~GD---  252 (319)
                      +.+.+-....++.+.                                +..+.. ..+ +.++.++ +.+.    .+|   
T Consensus       276 Ekm~SG~yLGel~R~il~~~~~~~~lf~~~~~~l~~~~~~~t~~ls~i~~d~~-~~l-~~~~~il~~~~~~~~t~~D~~~  353 (457)
T 2yhx_A          276 XKNSXAKNXGQSLRDVLMXFKXXGQXHXXXAXSFXAANVENTSYPAKIQKLPH-FDL-RXXXDLFXGDQGIAXKTXMKXV  353 (457)
T ss_dssp             HHHHCGGGHHHHHHHHHHHHHHTTSSSSSCCCSCCSTTCSCTHHHHHHHHCCS-SSC-HHHHHHHHHHHTCCCCHHHHHH
T ss_pred             HHHhhhcCcHHHHHHHHHHHhcccccccccchhcccccCcChHHHHHHhcCCc-hhh-hHHHHHHHHHhCCCccchhhHH
Confidence            333321111111111                                100000 000 1155666 6666    788   


Q ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhcccccccEEEEcchhhhcHHHHHHHHhh
Q 020972          253 --EVANKILQDSVEELALSVKAVVQRLSLSGEGVTYTKILKEKVPLLMENILFLLSWLVVFLKLIE  316 (319)
Q Consensus       253 --~~A~~il~~a~~~Lg~~la~li~~l~~~~~~~~~~~~~~~~~~ivl~Gg~~~~~~~~~~~~~~~  316 (319)
                        ++|..|.+++++.+|.+++++++.+++            ++..|++.||+  +..+.|.+.+.|
T Consensus       354 v~~ia~~V~~RaA~l~A~~iaai~~~~~~------------~~~~V~vdGsv--~~~p~f~~~l~~  405 (457)
T 2yhx_A          354 VRRXLFLIAAYAFRLVVCXIXAICQKKGY------------SSGHIAAXGSX--RSYSGFSXNSAT  405 (457)
T ss_dssp             HHHHHHHHHHHHHHHHTHHHHHHHHHHTC------------SSEEEEEESTT--TTSTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhCC------------CcEEEEEECCc--ccCchHHHHHHH
Confidence              999999999999999999999999997            34678889998  677888877764

>1cza_N Hexokinase type I; structurally homologous domains, transferase; HET: GLC G6P ADP; 1.90A {Homo sapiens} SCOP: c.55.1.3 c.55.1.3 c.55.1.3 c.55.1.3 PDB: 1dgk_N* 1hkb_A* 1qha_A* 1hkc_A* 1bg3_A* 2nzt_A*

Probab=99.88  E-value=1.1e-21  Score=204.81  Aligned_cols=272  Identities=15%  Similarity=0.115  Sum_probs=165.6

Q ss_pred             cCCCcEEEEEEcCccceeEEEEeCccCCCCCCCCCC----e-EEEEecCCCCc-cccCHHHHHHHHHHHHHHHHHHcCCC
Q 020972           18 SGGREVILGLDGGTTSTVCICMPVISMSDSLPDPLP----V-LARAAAGCSNH-NSVGEDAARETIEKVMADALLKSGSN   91 (319)
Q Consensus        18 ~~m~~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~----i-l~~~~~~~~~~-~~~~~~~~~~~i~~~i~~~l~~~~~~   91 (319)
                      ....+++||||+|||++|+++++.         +|+    + +.+.+.+.... ...+.+++++.|.+.+++++++.+..
T Consensus        74 G~E~G~~laiDlGGTnirv~lv~~---------~G~~~~~i~~~~~~~~ip~~~~~~~~~~lf~~Ia~~i~~~l~~~~~~  144 (917)
T 1cza_N           74 GSEKGDFIALDLGGSSFRILRVQV---------NHEKNQNVHMESEVYDTPENIVHGSGSQLFDHVAECLGDFMEKRKIK  144 (917)
T ss_dssp             SCCCEEEEEEEESSSSEEEEEEEE---------EEETTEEEEEEEEEECCCHHHHSSBHHHHHHHHHHHHHHHHHHHTCT
T ss_pred             CCCcceEEEEEeCCCeEEEEEEEe---------cCCCcceEEEEEEEEECCcccccCCHHHHHHHHHHHHHHHHHhcCCC
Confidence            334578999999999999999998         775    5 55555443211 11367899999999999998876543


Q ss_pred             ccccceEEEeecCCCCc---h---------h-------HHHHHHHHHhhCC----C-CceEEEeCcHHHHHHhhc-CCCC
Q 020972           92 RSAVRAVCLAVSGVNHP---T---------D-------QQRILNWLRDIFP----G-NVRLYVHNDALAALASGT-MGKL  146 (319)
Q Consensus        92 ~~~i~~Igig~pG~~~~---~---------~-------~~~l~~~L~~~~~----~-~~pv~v~NDa~aa~~g~~-~g~~  146 (319)
                      .+ ...+|+++|++.+.   .         .       +.++.+.|++.+.    . ..||.|+||+++++++++ .+.+
T Consensus       145 ~~-~~~lGi~fs~P~~q~~~~~G~l~~wtkgfni~~~~g~~v~~~L~~~l~r~g~~pv~~val~NDa~~tll~e~~~~~~  223 (917)
T 1cza_N          145 DK-KLPVGFTFSFPCQQSKIDEAILITWTKRFKASGVEGADVVKLLNKAIKKRGDYDANIVAVVNDTVGTMMTCGYDDQH  223 (917)
T ss_dssp             TS-CCCEEEEECSCEECSSTTCCEECCCCTTCCCBTCTTSBHHHHHHHHHHHHCSCCCCEEEEECHHHHHHHHHHHHCTT
T ss_pred             CC-cccEEEEEccccccCcCCceEEEecccCCCCCcccCCchHHHHHHHHhhcCCCCceEEEEEEhhHHHHHHhhccCCC
Confidence            32 23567777776431   1         1       2366677766552    1 137999999999999874 5778


Q ss_pred             CeEEEEECccceeEeEecCCc-----------EEeeCCCCCccCCcCChHHHHHHHHHHHHHHhcCC---C------CCc
Q 020972          147 HGCVLIAGTGTIAYGFTEDGR-----------DARAAGAGPILGDWGSGYGIAAQALTAVIRAYDGR---G------PDT  206 (319)
Q Consensus       147 ~~v~v~~GTGigg~gii~dG~-----------~~raGg~Ghl~gd~Gsa~~iG~~~~~~~~~~~dg~---~------~~~  206 (319)
                      +.+++++|||++| +++.||+           ...++||||+. +.+.-..+ ....+....+..+.   .      +..
T Consensus       224 ~~iglilGTGvng-g~i~~g~~i~~~~G~~g~~~in~E~G~f~-~~~~l~~~-~t~~D~~~dc~~g~pg~g~~Ek~~SG~  300 (917)
T 1cza_N          224 CEVGLIIGTGTNA-CYMEELRHIDLVEGDEGRMCINTEWGAFG-DDGSLEDI-RTEFDRAIDAYSLNPGKQLFEKMVSGM  300 (917)
T ss_dssp             EEEEEEESSSEEE-EEEEEGGGCTTSSCCSSEEEEECCGGGTT-TTTTTTTT-CCHHHHHHHHTSSSTTSSTTHHHHSHH
T ss_pred             cEEEEEEECCcce-EEEecCcccccccCCCCceEEeccccccC-CccccccC-CCccccccccCCcCCCccHhHHHhhhh
Confidence            8999999999966 6888887           44577788762 11100000 00000000111111   0      001


Q ss_pred             hhHHHHHH----H------c------------CCCChhhHHHHhccCCChHHHhchhHHHHHHH----HcCC-----HHH
Q 020972          207 MLTSNILS----T------L------------ELSSPDELIGWTYVDPSWARIAALVPVVVSCA----EAGD-----EVA  255 (319)
Q Consensus       207 ~l~~~~~~----~------~------------~~~~~~~l~~~~~~~~~~~~~a~~~~~v~~~A----~~GD-----~~A  255 (319)
                      .+.+.+..    .      +            .+ +...+ ..+. +. .... ..+..|++.+    .++|     +.|
T Consensus       301 yLgel~r~~l~~~~~~~~~~~~~~~~~l~~~~~l-~t~~v-s~~~-~~-~~~~-~~~~~i~~~~~~~~~~~D~~~~~~~a  375 (917)
T 1cza_N          301 YLGELVRLILVKMAKEGLLFEGRITPELLTRGKF-NTSDV-SAIE-KN-KEGL-HNAKEILTRLGVEPSDDDCVSVQHVC  375 (917)
T ss_dssp             HHHHHHHHHHHHHHHTTSSGGGCCCTTTTSTTSS-CHHHH-HHHT-CT-TTHH-HHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhhccccccccccchhhcccccc-ChHHH-HHHh-cc-cccH-HHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence            11111000    0      0            00 01111 1111 00 0111 1234567766    3555     999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHh--cccCCCcchhhcccccccEEEEcchhhhcHHHHHHHHhh
Q 020972          256 NKILQDSVEELALSVKAVVQRL--SLSGEGVTYTKILKEKVPLLMENILFLLSWLVVFLKLIE  316 (319)
Q Consensus       256 ~~il~~a~~~Lg~~la~li~~l--~~~~~~~~~~~~~~~~~~ivl~Gg~~~~~~~~~~~~~~~  316 (319)
                      ..+++++++++|.+|+++++.+  ||..+        ..+..|+++||++ +.++.|++++.+
T Consensus       376 ~~v~~raa~llA~gia~ii~~l~~dp~~~--------~~~~~IvigGgV~-~~~~~~~~~l~~  429 (917)
T 1cza_N          376 TIVSFRSANLVAATLGAILNRLRDNKGTP--------RLRTTVGVDGSLY-KTHPQYSRRFHK  429 (917)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTCS--------SEEEEEEEECHHH-HHCSSHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCCccc--------CcceEEEECCchh-hccHHHHHHHHH
Confidence            9999999999999999999999  77211        1236899999999 888888888765

>1cza_N Hexokinase type I; structurally homologous domains, transferase; HET: GLC G6P ADP; 1.90A {Homo sapiens} SCOP: c.55.1.3 c.55.1.3 c.55.1.3 c.55.1.3 PDB: 1dgk_N* 1hkb_A* 1qha_A* 1hkc_A* 1bg3_A* 2nzt_A*

Probab=99.77  E-value=5.7e-18  Score=176.86  Aligned_cols=277  Identities=14%  Similarity=0.098  Sum_probs=165.7

Q ss_pred             ccCCCcEEEEEEcCccceeEEEEeCccCCCCCCCC-CC--eE----EEEecCCCCccccCHHHHHHHHHHHHHHHHHHcC
Q 020972           17 ESGGREVILGLDGGTTSTVCICMPVISMSDSLPDP-LP--VL----ARAAAGCSNHNSVGEDAARETIEKVMADALLKSG   89 (319)
Q Consensus        17 ~~~m~~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~-G~--il----~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~   89 (319)
                      +....+.+|+||+|||++|++++++         + |+  ++    .+.+.| ......+.+++++.|.+.|.+++++.+
T Consensus       521 ~G~E~G~~lalDlGGTn~Rv~~V~l---------~~g~~~~~~~~~~~~~ip-~~~~~~~~~~lfd~Ia~~i~~~l~~~~  590 (917)
T 1cza_N          521 DGTENGDFLALDLGGTNFRVLLVKI---------RSGKKRTVEMHNKIYAIP-IEIMQGTGEELFDHIVSCISDFLDYMG  590 (917)
T ss_dssp             CSCCCEEEEEEEESSSSEEEEEEEE---------ECSTTCEEEEEEEEECCC-HHHHTSBHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCcceEEEEEEECCCcEEEEEEEe---------CCCcceeEEeeeeEEecC-cccccCCHHHHHHHHHHHHHHHHHHcC
Confidence            3344568999999999999999998         5 54  54    233332 221123568899999999999998876


Q ss_pred             CCccccceEEEeecCCCCch---------h----------HHHHHHHHHhhC----CC-CceEEEeCcHHHHHHhh-cCC
Q 020972           90 SNRSAVRAVCLAVSGVNHPT---------D----------QQRILNWLRDIF----PG-NVRLYVHNDALAALASG-TMG  144 (319)
Q Consensus        90 ~~~~~i~~Igig~pG~~~~~---------~----------~~~l~~~L~~~~----~~-~~pv~v~NDa~aa~~g~-~~g  144 (319)
                      ....++ .+|+++|++++..         +          +.++.+.|++.+    +. ..|+.|.||++++++++ +.+
T Consensus       591 ~~~~~l-~lG~tfsfPv~q~~i~~~~L~~WtKgf~~~~~~g~dv~~~L~~al~r~~~~~v~~val~NDtv~tlla~~y~~  669 (917)
T 1cza_N          591 IKGPRM-PLGFTFSFPCQQTSLDAGILITWTKGFKATDCVGHDVVTLLRDAIKRREEFDLDVVAVVNDTVGTMMTCAYEE  669 (917)
T ss_dssp             CCSSCC-EEEEEECSCEEEEETTEEEECCCCTTCCCBSCTTSBHHHHHHHHHHHHTSCCCEEEEEECHHHHHHHHHHTTC
T ss_pred             CCccce-eEEEEeeccccccccCccEECceecccccCCcCCCcHHHHHHHHHHhcCCCCceEEEEEEccHHHHHHhccCC
Confidence            554444 8999999997531         1          235555555554    30 12899999999998886 467


Q ss_pred             CCCeEEEEECccceeEeEecCCcEEe--eCCCCCccCCcCChHHHHH--------HHHHHHHHHh---------cCCCCC
Q 020972          145 KLHGCVLIAGTGTIAYGFTEDGRDAR--AAGAGPILGDWGSGYGIAA--------QALTAVIRAY---------DGRGPD  205 (319)
Q Consensus       145 ~~~~v~v~~GTGigg~gii~dG~~~r--aGg~Ghl~gd~Gsa~~iG~--------~~~~~~~~~~---------dg~~~~  205 (319)
                      .++.+.+++|||+++ +++.+++.+.  .|++|||..+...+ .+|.        ...+..+...         +-..+.
T Consensus       670 ~~~~iglIlGTG~na-~y~e~~~~i~~~~g~~g~m~In~EwG-~fg~~~~l~~~~T~~D~~~d~~s~~pG~q~~Ek~~SG  747 (917)
T 1cza_N          670 PTCEVGLIVGTGSNA-CYMEEMKNVEMVEGDQGQMCINMEWG-AFGDNGCLDDIRTHYDRLVDEYSLNAGKQRYEKMISG  747 (917)
T ss_dssp             TTEEEEEEESSSEEE-EEEEETTTCTTSSCCSSEEEEECCGG-GTTTTSTTTTTCCHHHHHHHHTSTTTTSCTTGGGTST
T ss_pred             CCcEEEEEEeCCeeE-EEEEcCccccCcCCCcCcEEEecccc-cCCCcccccCCCCchhhhhhhcCCCCCCCchHHhhhH
Confidence            778999999999966 6888876432  24555554321100 1111        0000000000         000011


Q ss_pred             chhHHHHHH----HcC--C----CCh----------hhHHHHhccCCChHHHhchhHHHHHHHH----cCC-----HHHH
Q 020972          206 TMLTSNILS----TLE--L----SSP----------DELIGWTYVDPSWARIAALVPVVVSCAE----AGD-----EVAN  256 (319)
Q Consensus       206 ~~l~~~~~~----~~~--~----~~~----------~~l~~~~~~~~~~~~~a~~~~~v~~~A~----~GD-----~~A~  256 (319)
                      ..+.+.+..    ...  .    ...          ...++.+..+..  ... ..+.+++++.    .+|     ++|.
T Consensus       748 ~yLgel~R~il~~~~~~~~lf~~~~~~~l~~~~~~~t~~ls~ie~d~~--~~~-~~~~i~~~~~~~~~~~D~~~~~~ia~  824 (917)
T 1cza_N          748 MYLGEIVRNILIDFTKKGFLFRGQISETLKTRGIFETKFLSQIESDRL--ALL-QVRAILQQLGLNSTCDDSILVKTVCG  824 (917)
T ss_dssp             TTHHHHHHHHHHHHHHTTSSGGGCCCTTTTSTTCSCHHHHHHHTCSSC--CHH-HHHHHHHHHTCCCCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhcccccccccccchhhccCCccchHHhhhhhcCcc--hhh-HHHHHHHHhCCCCChHHHHHHHHHHH
Confidence            111111110    000  0    000          001111111110  000 1345777765    678     9999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcccCCCcchhhcccccccEEEEcchhhhcHHHHHHHHhh
Q 020972          257 KILQDSVEELALSVKAVVQRLSLSGEGVTYTKILKEKVPLLMENILFLLSWLVVFLKLIE  316 (319)
Q Consensus       257 ~il~~a~~~Lg~~la~li~~l~~~~~~~~~~~~~~~~~~ivl~Gg~~~~~~~~~~~~~~~  316 (319)
                      .+.+++++.+|.+|+++++.++|....      ...+..|++.||++ +..+.|.+.+.|
T Consensus       825 ~v~~RaA~l~a~~iaai~~~~~~~~~~------~~~~~~V~vdGsv~-~~~p~f~~~~~~  877 (917)
T 1cza_N          825 VVSRRAAQLCGAGMAAVVDKIRENRGL------DRLNVTVGVDGTLY-KLHPHFSRIMHQ  877 (917)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTC------SSEEEEEEEECHHH-HHCTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCccccc------CccceEEEECCHHH-HcCcHHHHHHHH
Confidence            999999999999999999999872110      01125799999998 788888887765

>3o8m_A Hexokinase; rnaseh-like fold, glycolysis, glucose repression binding, MIG1 binding, transferase; HET: GLC BGC; 1.42A {Kluyveromyces lactis} PDB: 3o1b_A 3o08_A* 3o1w_A* 3o5b_A* 3o4w_A 3o80_A* 3o6w_A* 1ig8_A 3b8a_X*

Probab=99.53  E-value=9.3e-13  Score=127.86  Aligned_cols=133  Identities=13%  Similarity=0.090  Sum_probs=96.5

Q ss_pred             CCCcEEEEEEcCccceeEEEEeCccCCCCCCCCCC-----eEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCc-
Q 020972           19 GGREVILGLDGGTTSTVCICMPVISMSDSLPDPLP-----VLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNR-   92 (319)
Q Consensus        19 ~m~~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~-----il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~-   92 (319)
                      ...+.+|++|+|||++|++++++         +|+     +.....+|. +....+.+++++.|++.|.+++++..... 
T Consensus        77 ~E~G~~LalDlGGTn~Rv~~V~l---------~g~~~~~~~~~~~~Ip~-~~~~~~~~~lfd~Ia~~i~~fl~~~~~~~~  146 (485)
T 3o8m_A           77 KETGDFLALDLGGTNLRVVLVKL---------GGNHDFDTTQNKYRLPD-HLRTGTSEQLWSFIAKCLKEFVDEWYPDGV  146 (485)
T ss_dssp             CCEEEEEEEEESSSEEEEEEEEE---------ESSSCEEEEEEEEECCT-TGGGSBHHHHHHHHHHHHHHHHHHHCTTCC
T ss_pred             CcceEEEEEEecCCeEEEEEEEE---------CCCCceEEEEEEEecCc-hhccCCHHHHHHHHHHHHHHHHHHhccccc
Confidence            33468999999999999999998         665     444445433 33223478999999999999998875432 


Q ss_pred             cccceEEEeecCCCCchh-------------------HHHHHHHHHhhC---CCCce---EEEeCcHHHHHHhh-cCCCC
Q 020972           93 SAVRAVCLAVSGVNHPTD-------------------QQRILNWLRDIF---PGNVR---LYVHNDALAALASG-TMGKL  146 (319)
Q Consensus        93 ~~i~~Igig~pG~~~~~~-------------------~~~l~~~L~~~~---~~~~p---v~v~NDa~aa~~g~-~~g~~  146 (319)
                      .+...+|+++|++.+...                   +.++.+.|++.+   +  .|   +.|.||++++++++ +.+.+
T Consensus       147 ~~~l~lGftfSfP~~q~~i~~g~li~wtKGF~i~~~~G~dv~~~L~~al~r~g--l~v~v~aivNDtv~tll~~~y~~~~  224 (485)
T 3o8m_A          147 SEPLPLGFTFSYPASQKKINSGVLQRWTKGFDIEGVEGHDVVPMLQEQIEKLN--IPINVVALINDTTGTLVASLYTDPQ  224 (485)
T ss_dssp             SSCEEEEEEECSCEECSBTTCCEECCCCTTCCCBTCTTSBHHHHHHHHHHHTT--CCEEEEEEECHHHHHHHHHHHHCTT
T ss_pred             ccccceEEEEeeeEEEcccCCEEEeeccccccCCCcCCccHHHHHHHHHHhcC--CCceEEEEEEcHHHHHHHHhhCCCC
Confidence            356678888888854210                   235566666555   4  56   68999999998876 45667


Q ss_pred             CeEEEEECccceeEeEec
Q 020972          147 HGCVLIAGTGTIAYGFTE  164 (319)
Q Consensus       147 ~~v~v~~GTGigg~gii~  164 (319)
                      +.+.+++|||+++ +++.
T Consensus       225 ~~iglIlGTG~N~-~y~e  241 (485)
T 3o8m_A          225 TKMGIIIGTGVNG-AYYD  241 (485)
T ss_dssp             EEEEEEESSSEEE-EEEE
T ss_pred             cEEEEEEecCcce-EEEe
Confidence            8899999999977 4654

>3hm8_A Hexokinase-3; glucose, glucose-6-phosphate, non-protein kinase, structural genomics consortium, SGC, A enzyme, ATP-binding, glycolysis; HET: GLC BG6; 2.80A {Homo sapiens}

Probab=98.95  E-value=2.1e-07  Score=89.06  Aligned_cols=136  Identities=16%  Similarity=0.083  Sum_probs=87.8

Q ss_pred             ccCCCcEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEE-ecC-CCCccccCHHHHHHHHHHHHHHHHHHcCCCcc-
Q 020972           17 ESGGREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARA-AAG-CSNHNSVGEDAARETIEKVMADALLKSGSNRS-   93 (319)
Q Consensus        17 ~~~m~~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~-~~~-~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~-   93 (319)
                      +....+.+|++|+|||+.|++++++         .|.+.... ..+ |......+.+++++.|++.|.+++++.+.... 
T Consensus        54 ~G~E~G~~LAlDlGGTn~RV~~V~l---------~g~~~~~~~~~~ip~~~~~g~~~~LFd~Ia~~i~~fl~~~~~~~~~  124 (445)
T 3hm8_A           54 DGSERGDFLALDLGGTNFRVLLVRV---------TTGVQITSEIYSIPETVAQGSGQQLFDHIVDCIVDFQQKQGLSGQS  124 (445)
T ss_dssp             CSCCCEEEEEEEESSSSEEEEEEEE---------SSSEEEEEEEECCCHHHHTSBHHHHHHHHHHHHHHHHHHHTCTTCC
T ss_pred             CCceeeEEEEEEecCCeEEEEEEEE---------CCceEEEEEEeccCccccCCCHHHHHHHHHHHHHHHHHHhCccccc
Confidence            3334568999999999999999999         66533222 111 11111135688999999999999987654322 


Q ss_pred             ccceEEEeecCCCCc-h--------h--------H----HHHHHHHHhh--CCCCceEEEeCcHHHHHHhh-cCCCCCeE
Q 020972           94 AVRAVCLAVSGVNHP-T--------D--------Q----QRILNWLRDI--FPGNVRLYVHNDALAALASG-TMGKLHGC  149 (319)
Q Consensus        94 ~i~~Igig~pG~~~~-~--------~--------~----~~l~~~L~~~--~~~~~pv~v~NDa~aa~~g~-~~g~~~~v  149 (319)
                      --.|+.+++|.-... .        +        +    .-|++.++++  ++- ..+.|.||+.++++++ +.+.+..+
T Consensus       125 lplGftFSFP~~Q~sl~~g~Li~wtKGF~~~~~~G~dv~~lL~~al~r~~~~~v-~vvAivNDTvgTLla~~y~~~~~~i  203 (445)
T 3hm8_A          125 LPLGFTFSFPCRQLGLDQGILLNWTKGFKASDCEGQDVVSLLREAITRRQAVEL-NVVAIVNDTVGTMMSCGYEDPRCEI  203 (445)
T ss_dssp             CCEEEEECSCEECSSTTCCEECCCCTTCCCBTCTTSBHHHHHHHHHHHTTCSCC-CSEEEECHHHHHHHHHHTTCTTEEE
T ss_pred             CcceEEEeeeeEeccCCceEEEEeeccccCCCCCCCcHHHHHHHHHHhcCCCCc-ceEEEecCcHHHHHhhccCCCCceE
Confidence            224555555543211 0        0        1    2455666554  221 2489999999988875 45666788


Q ss_pred             EEEECccceeEeEe
Q 020972          150 VLIAGTGTIAYGFT  163 (319)
Q Consensus       150 ~v~~GTGigg~gii  163 (319)
                      .+++|||++++ ++
T Consensus       204 glIlGTGtNa~-y~  216 (445)
T 3hm8_A          204 GLIVGTGTNAC-YM  216 (445)
T ss_dssp             EEEESSSEEEE-EE
T ss_pred             EEEEeCCceEE-EE
Confidence            99999999775 55

>1hux_A Activator of (R)-2-hydroxyglutaryl-COA dehydratase; actin fold, metal binding protein; HET: ADP; 3.00A {Acidaminococcus fermentans} SCOP: c.55.1.5

Probab=98.79  E-value=9.5e-07  Score=79.62  Aligned_cols=115  Identities=13%  Similarity=0.133  Sum_probs=66.5

Q ss_pred             cEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceEEEe
Q 020972           22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLA  101 (319)
Q Consensus        22 ~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Igig  101 (319)
                      .|+||||+|+|+|+++++|.         +|+++.+.+.++..    ++.   +.+.++++++.+ .+.+..+|.+  ++
T Consensus         3 ~~~lGiD~Gst~~k~~l~d~---------~g~i~~~~~~~~~~----~~~---~~~~~~l~~l~~-~~~~~~~i~~--i~   63 (270)
T 1hux_A            3 IYTLGIDVGSTASKCIILKD---------GKEIVAKSLVAVGT----GTS---GPARSISEVLEN-AHMKKEDMAF--TL   63 (270)
T ss_dssp             CEEEEEEECSSEEEEEEEET---------TTEEEEEEEEECCS----SCC---HHHHHHHHHHHH-HTCCGGGCSE--EE
T ss_pred             cEEEEEEeccceEEEEEEeC---------CCCEEEEEEecCCC----CHH---HHHHHHHHHHHH-cCCChhHEEE--EE
Confidence            48999999999999999998         89999987654321    222   223344555543 2444456655  55


Q ss_pred             ecCCCCchhHHHHHHHHHhhCCCCceEEEeCcHHHHHHhh-cCCCCCeEEEEECccceeEeEecCCcE
Q 020972          102 VSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASG-TMGKLHGCVLIAGTGTIAYGFTEDGRD  168 (319)
Q Consensus       102 ~pG~~~~~~~~~l~~~L~~~~~~~~pv~v~NDa~aa~~g~-~~g~~~~v~v~~GTGigg~gii~dG~~  168 (319)
                      ++|....        .+.. +.  .|+  .|+..+.+.++ +...+.-+++-+|.+-.-.-.+.+|++
T Consensus        64 ~TG~g~~--------~~~~-~~--~~~--v~Ei~ah~~ga~~~~~~~~~vidiGGqd~k~i~~~~g~v  118 (270)
T 1hux_A           64 ATGYGRN--------SLEG-IA--DKQ--MSELSCHAMGASFIWPNVHTVIDIGGQDVKVIHVENGTM  118 (270)
T ss_dssp             EESTTTT--------TTTT-TC--SEE--ECHHHHHHHHHHHHCTTCCEEEEEETTEEEEEEEETTEE
T ss_pred             EeCcccc--------chhh-cC--CCC--cccHHHHHHHHHHhCCCCCEEEEECCCceEEEEEeCCce
Confidence            5776432        1122 33  454  67777666543 222223345666654433334456754

>3f9m_A Glucokinase; hexokinase IV, ATP-binding, diabetes mellitus, mutation, glycolysis, nucleotide-binding, transfera; HET: GLC MRK; 1.50A {Homo sapiens} PDB: 3fgu_A* 3id8_A* 3idh_A* 3vev_A* 3vf6_A* 3qic_A* 3s41_A* 4dhy_A* 4dch_A* 3vey_A* 1v4s_A* 3a0i_X* 3fr0_A* 3goi_A* 3imx_A* 3h1v_X* 1v4t_A*

Probab=98.74  E-value=4.8e-06  Score=80.32  Aligned_cols=146  Identities=18%  Similarity=0.115  Sum_probs=94.3

Q ss_pred             CCcEEEEEEcCccceeEEEEeCccCCCCCCCCCC-----eEE--EEecC-CCCccccCHHHHHHHHHHHHHHHHHHcCCC
Q 020972           20 GREVILGLDGGTTSTVCICMPVISMSDSLPDPLP-----VLA--RAAAG-CSNHNSVGEDAARETIEKVMADALLKSGSN   91 (319)
Q Consensus        20 m~~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~-----il~--~~~~~-~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~   91 (319)
                      ..+.+|++|+|||+.|++++++         .|.     ...  +.+.+ |......+.+++.+-|++.+.+++++.+..
T Consensus        75 E~G~fLAlDlGGTNfRV~~V~L---------~g~~~~~~~~~~~~~~~~Ip~~l~~gt~~eLFd~IA~~i~~fl~~~~~~  145 (470)
T 3f9m_A           75 EVGDFLSLDLGGTNFRVMLVKV---------GEGEEGQWSVKTKHQMYSIPEDAMTGTAEMLFDYISECISDFLDKHQMK  145 (470)
T ss_dssp             CCEEEEEEEESSSEEEEEEEEE---------EC----CEEEEEEEEEEECCHHHHSSBHHHHHHHHHHHHHHHHHHTTCS
T ss_pred             cceEEEEEEecCceEEEEEEEE---------CCCCCCcceEEEEEEeecCChHhccCCHHHHHHHHHHHHHHHHhhcccc
Confidence            3458999999999999999998         332     122  11111 111112356889999999999999987654


Q ss_pred             ccccceEEEeecCCCCchh-----------------------HHHHHHHHHhh--CCCCceEEEeCcHHHHHHhhc-CCC
Q 020972           92 RSAVRAVCLAVSGVNHPTD-----------------------QQRILNWLRDI--FPGNVRLYVHNDALAALASGT-MGK  145 (319)
Q Consensus        92 ~~~i~~Igig~pG~~~~~~-----------------------~~~l~~~L~~~--~~~~~pv~v~NDa~aa~~g~~-~g~  145 (319)
                      . +..-+|+.++=|.+...                       ..-|++.++++  ++- ..+.|.||..+.+++.. ...
T Consensus       146 ~-~~lpLGfTFSFP~~Q~sl~~g~Li~WTKGF~~~~v~G~DVv~lL~~al~r~g~~~v-~v~AlvNDTVgTL~s~aY~~~  223 (470)
T 3f9m_A          146 H-KKLPLGFTFSFPVRHEDIDKGILLNWTKGFKASGAEGNNVVGLLRDAIKRRGDFEM-DVVAMVNDTVATMISCYYEDH  223 (470)
T ss_dssp             S-SCCEEEEEECSCEEEEETTEEEECCCCTTCCCBTCBTSBHHHHHHHHHHHHCSCCC-EEEEEECHHHHHHHHHHTTCT
T ss_pred             c-cccceEEEEeccccccCCCceEEEeccccccCCCcCCccHHHHHHHHHHhcCCCCC-cEEEEEEcCHHHHHhcccCCC
Confidence            3 34456666665543210                       13567777766  231 35889999998888654 445


Q ss_pred             CCeEEEEECccceeEeEec-----------CCcEEeeCCCCCc
Q 020972          146 LHGCVLIAGTGTIAYGFTE-----------DGRDARAAGAGPI  177 (319)
Q Consensus       146 ~~~v~v~~GTGigg~gii~-----------dG~~~raGg~Ghl  177 (319)
                      +..+-+++|||..++ ++.           .++..-.=|||..
T Consensus       224 ~~~iGlI~GTGtNa~-Y~E~~~~I~k~~~~~~~miINtEwG~F  265 (470)
T 3f9m_A          224 QCEVGMIVGTGCNAC-YMEEMQNVELVEGDEGRMCVNTEWGAF  265 (470)
T ss_dssp             TEEEEEEESSSEEEE-EEEEGGGCTTSSCCSSEEEEECCGGGT
T ss_pred             CceEEEEEecCCceE-EeeeccccccccCCCCcEEEeechhhc
Confidence            567889999999875 543           2344445577743

>3ifr_A Carbohydrate kinase, FGGY; xylulose kinase, SGX, structural GENO 11200H, transferase, PSI-2; 2.30A {Rhodospirillum rubrum}

Probab=98.65  E-value=5.5e-08  Score=95.50  Aligned_cols=80  Identities=21%  Similarity=0.228  Sum_probs=64.4

Q ss_pred             cccCCCcEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCC------ccccCHHHHHHHHHHHHHHHHHHcC
Q 020972           16 EESGGREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSN------HNSVGEDAARETIEKVMADALLKSG   89 (319)
Q Consensus        16 ~~~~m~~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~------~~~~~~~~~~~~i~~~i~~~l~~~~   89 (319)
                      |..++++|+||||+|+|++|++++|.         +|+++.+.+.+...      ..+.+++++++.+.+++++++++.+
T Consensus         1 ~~~~~~~~~lgIDiGtts~k~~l~d~---------~G~il~~~~~~~~~~~p~~g~~e~dp~~~~~~i~~~i~~~~~~~~   71 (508)
T 3ifr_A            1 MSLAQGRQVIGLDIGTTSTIAILVRL---------PDTVVAVASRPTTLSSPHPGWAEEDPAQWWDNARAVLAELKTTAG   71 (508)
T ss_dssp             ------CEEEEEEECSSEEEEEEEET---------TTEEEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHHHC
T ss_pred             CCcccCCEEEEEEecCcceEEEEECC---------CCCEEEEEEEecceecCCCCceEECHHHHHHHHHHHHHHHHHhcC
Confidence            45566679999999999999999999         99999887664321      1246899999999999999998888


Q ss_pred             CCccccceEEEeecC
Q 020972           90 SNRSAVRAVCLAVSG  104 (319)
Q Consensus        90 ~~~~~i~~Igig~pG  104 (319)
                      .++.+|.+|||+.+|
T Consensus        72 ~~~~~I~~Igis~~~   86 (508)
T 3ifr_A           72 ESDWRPGGICVTGML   86 (508)
T ss_dssp             GGGCCEEEEEEEECS
T ss_pred             CChhheEEEEEECCC
Confidence            777899999999999

>3g25_A Glycerol kinase; IDP00743, ATP-binding, glycerol metabolism, nucleotide-binding, transferase, struct genomics; HET: MSE; 1.90A {Staphylococcus aureus subsp} PDB: 3ge1_A*

Probab=98.58  E-value=1.9e-07  Score=91.47  Aligned_cols=78  Identities=14%  Similarity=0.161  Sum_probs=65.7

Q ss_pred             cCCCcEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCC------CccccCHHHHHHHHHHHHHHHHHHcCCC
Q 020972           18 SGGREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCS------NHNSVGEDAARETIEKVMADALLKSGSN   91 (319)
Q Consensus        18 ~~m~~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~------~~~~~~~~~~~~~i~~~i~~~l~~~~~~   91 (319)
                      +.|++|+||||+|+|++|++++|.         +|+++.+.+.+..      ...+.+++++++.+.+.+++++++.+.+
T Consensus         2 ~aM~~~~lgIDiGtts~k~~l~d~---------~G~il~~~~~~~~~~~p~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~   72 (501)
T 3g25_A            2 NAMEKYILSIDQGTTSSRAILFNQ---------KGEIAGVAQREFKQYFPQSGWVEHDANEIWTSVLAVMTEVINENDVR   72 (501)
T ss_dssp             -CCCCEEEEEEECSSEEEEEEECT---------TSCEEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHTTTCC
T ss_pred             cccccEEEEEEeCccceEEEEEcC---------CCCEEEEEEeecccccCCCCcEEECHHHHHHHHHHHHHHHHHhcCCC
Confidence            467789999999999999999999         9999988765432      1234689999999999999999988887


Q ss_pred             ccccceEEEeecC
Q 020972           92 RSAVRAVCLAVSG  104 (319)
Q Consensus        92 ~~~i~~Igig~pG  104 (319)
                      +.+|.+|||+.++
T Consensus        73 ~~~I~~Igis~~~   85 (501)
T 3g25_A           73 ADQIAGIGITNQR   85 (501)
T ss_dssp             GGGEEEEEEEECS
T ss_pred             cccEEEEEEECCc
Confidence            7899999999874

>4e1j_A Glycerol kinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, transferase; 2.33A {Sinorhizobium meliloti}

Probab=98.58  E-value=2.1e-07  Score=91.66  Aligned_cols=76  Identities=20%  Similarity=0.200  Sum_probs=65.2

Q ss_pred             CCcEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCC------CccccCHHHHHHHHHHHHHHHHHHcCCCcc
Q 020972           20 GREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCS------NHNSVGEDAARETIEKVMADALLKSGSNRS   93 (319)
Q Consensus        20 m~~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~------~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~   93 (319)
                      |++|+||||+|+|++|++++|.         +|+++.+.+.+..      ...+.+++++++.+.+.+++++++.+.++.
T Consensus        24 M~~~~lgIDiGtts~k~~l~d~---------~G~il~~~~~~~~~~~p~~g~~e~dp~~~~~~i~~~i~~~~~~~~~~~~   94 (520)
T 4e1j_A           24 MGGYILAIDQGTTSTRAIVFDG---------NQKIAGVGQKEFKQHFPKSGWVEHDPEEIWQTVVSTVKEAIEKSGITAN   94 (520)
T ss_dssp             CSCEEEEEEECSSEEEEEEECT---------TSCEEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHTTTCCGG
T ss_pred             hhCeEEEEEeCCcceEEEEECC---------CCCEEEEEEEecccccCCCCcEEECHHHHHHHHHHHHHHHHHhcCCCcc
Confidence            4579999999999999999999         9999988665432      123468999999999999999998888778


Q ss_pred             ccceEEEeecC
Q 020972           94 AVRAVCLAVSG  104 (319)
Q Consensus        94 ~i~~Igig~pG  104 (319)
                      +|.+|||+.+|
T Consensus        95 ~I~~Igis~~g  105 (520)
T 4e1j_A           95 DIAAIGITNQR  105 (520)
T ss_dssp             GEEEEEEEECS
T ss_pred             cEEEEEEeCCc
Confidence            99999999998

>2zf5_O Glycerol kinase; hyperthermophilic archaeon, ATP-binding, GL metabolism, nucleotide-binding, transferase; 2.40A {Thermococcus kodakarensis}

Probab=98.52  E-value=3.4e-07  Score=89.52  Aligned_cols=76  Identities=14%  Similarity=0.149  Sum_probs=64.8

Q ss_pred             CCcEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCC------ccccCHHHHHHHHHHHHHHHHHHcCCCcc
Q 020972           20 GREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSN------HNSVGEDAARETIEKVMADALLKSGSNRS   93 (319)
Q Consensus        20 m~~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~------~~~~~~~~~~~~i~~~i~~~l~~~~~~~~   93 (319)
                      |+.|+||||+|+|++|++++|.         +|+++.+.+.+...      ..+.+++++++.+.+.+++++++.+.++.
T Consensus         1 M~~~~lgiDiGtt~~k~~l~d~---------~g~~~~~~~~~~~~~~p~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~   71 (497)
T 2zf5_O            1 MEKFVLSLDEGTTSARAIIFDR---------ESNIHGIGQYEFPQHYPRPGWVEHNPEEIWDAQLRAIKDAIQSARIEPN   71 (497)
T ss_dssp             CCCEEEEEEECSSEEEEEEECT---------TCCEEEEEEEECCCBCCSTTCCEECHHHHHHHHHHHHHHHHHHHTCCGG
T ss_pred             CCcEEEEEecCCchhEEEEECC---------CCCEEEEEEeccceecCCCCcEEECHHHHHHHHHHHHHHHHHhcCCCcc
Confidence            4569999999999999999999         99999887765321      12358999999999999999988877777


Q ss_pred             ccceEEEeecC
Q 020972           94 AVRAVCLAVSG  104 (319)
Q Consensus        94 ~i~~Igig~pG  104 (319)
                      +|.+|||+.+|
T Consensus        72 ~i~~Igis~~~   82 (497)
T 2zf5_O           72 QIAAIGVTNQR   82 (497)
T ss_dssp             GEEEEEEEECS
T ss_pred             cEEEEEEecCC
Confidence            89999999998

>4ehu_A Activator of 2-hydroxyisocaproyl-COA dehydratase; actin fold, ATPase, electron transfer, ATP/ADP binding; HET: ANP; 1.60A {Clostridium difficile} PDB: 4eht_A* 4eia_A

Probab=98.46  E-value=5.2e-05  Score=67.97  Aligned_cols=113  Identities=15%  Similarity=0.203  Sum_probs=70.8

Q ss_pred             EEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceEEEee
Q 020972           23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV  102 (319)
Q Consensus        23 ~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Igig~  102 (319)
                      |+||||+|+|+++++++|.         +++++........    ..++.    ..+++++++++++....++..++.  
T Consensus         2 ~~lGID~GsT~tk~av~d~---------~~~il~~~~~~~g----~~~e~----a~~vl~~~~~~a~~~~~~~~~~a~--   62 (276)
T 4ehu_A            2 YTMGLDIGSTASKGVILKN---------GEDIVASETISSG----TGTTG----PSRVLEKLYGKTGLAREDIKKVVV--   62 (276)
T ss_dssp             EEEEEEECSSCEEEEEEET---------TTEEEEEEEESCC----TTSSH----HHHHHHHHHHHHCCCGGGEEEEEE--
T ss_pred             eEEEEEcCccEEEEEEEEC---------CCeEEEEEEecCC----CCHHH----HHHHHHHHHHHCCCcchhcccccc--
Confidence            8999999999999999998         8888887654321    12232    234567778888877666665543  


Q ss_pred             cCCCCchhHHHHHHHHHhhCCCCceEEEeCcHHHHHHhhc--CCCCCeEEEEECccceeEeEecCCcE
Q 020972          103 SGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGT--MGKLHGCVLIAGTGTIAYGFTEDGRD  168 (319)
Q Consensus       103 pG~~~~~~~~~l~~~L~~~~~~~~pv~v~NDa~aa~~g~~--~g~~~~v~v~~GTGigg~gii~dG~~  168 (319)
                      .|...            ....  .|....|...+.+++..  ......++...|.+.-..-+..+|..
T Consensus        63 t~~~~------------~a~~--~~~~~Vne~~aha~a~~~~~~~~~~vl~lgG~~~~~~~~~~~g~~  116 (276)
T 4ehu_A           63 TGYGR------------MNYS--DADKQISELSCHARGVNFIIPETRTIIDIGGQDAKVLKLDNNGRL  116 (276)
T ss_dssp             ESTTG------------GGCC--SCSEECCHHHHHHHHHHHHSTTCCEEEEECSSCEEEEEECTTSCE
T ss_pred             CchHH------------HHhh--CCCcccchHHHHHHHHHHhCCCCCeEEEEcCCCceEEEEEecCce
Confidence            33221            1233  57788899988777642  33345555555554433323345654

>2w40_A Glycerol kinase, putative; closed conformation, malaria, transferase, sugar kinase/HSP70/actin superfamily, open conformation; 1.49A {Plasmodium falciparum} PDB: 2w41_A*

Probab=98.44  E-value=4.8e-07  Score=88.60  Aligned_cols=76  Identities=12%  Similarity=0.115  Sum_probs=62.5

Q ss_pred             CCcEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCC------ccccCHHHHHHHHHHHHHHHHHHc--CCC
Q 020972           20 GREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSN------HNSVGEDAARETIEKVMADALLKS--GSN   91 (319)
Q Consensus        20 m~~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~------~~~~~~~~~~~~i~~~i~~~l~~~--~~~   91 (319)
                      ||.|+||||+|+|++|++++|.         +|+++.+.+.+...      ..+.+++++++.+.+.+++++++.  +.+
T Consensus         2 ~m~~~lgIDiGtT~~k~~l~d~---------~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~i~~~~~~~~~~~~   72 (503)
T 2w40_A            2 SMNVILSIDQSTQSTKVFFYDE---------ELNIVHSNNLNHEQKCLKPGWYEHDPIEIMTNLYNLMNEGIKVLKDKYT   72 (503)
T ss_dssp             -CEEEEEEEECSSEEEEEEEET---------TCCEEEEEEEECCCBCCSTTCCEECHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred             CccEEEEEEeCCcceEEEEECC---------CCCEEEEEEEeeeeecCCCCcEEECHHHHHHHHHHHHHHHHHHhhcCCC
Confidence            3468999999999999999999         99999887765421      123589999999999999998876  555


Q ss_pred             ccccceEEEeecC
Q 020972           92 RSAVRAVCLAVSG  104 (319)
Q Consensus        92 ~~~i~~Igig~pG  104 (319)
                      ..+|.+|||+.+|
T Consensus        73 ~~~i~~Igis~~~   85 (503)
T 2w40_A           73 SVIIKCIGITNQR   85 (503)
T ss_dssp             SCEEEEEEEEECS
T ss_pred             ccceEEEEEcCCc
Confidence            5689999999996

>4ijn_A Acetate kinase, acetokinase; proprionate kinase, ATP-dependent, metabolic intermediate biosynthesis, acetyl-COA biosynthesis, hydrolysis; HET: AMP; 1.70A {Mycobacterium smegmatis}

Probab=98.41  E-value=0.00022  Score=66.92  Aligned_cols=250  Identities=18%  Similarity=0.128  Sum_probs=137.1

Q ss_pred             cCCCcEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCC-ccccCHHHHHHHHHHHHHHHHHHcCCCc--cc
Q 020972           18 SGGREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSN-HNSVGEDAARETIEKVMADALLKSGSNR--SA   94 (319)
Q Consensus        18 ~~m~~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~-~~~~~~~~~~~~i~~~i~~~l~~~~~~~--~~   94 (319)
                      ..|+ .+|.|..|.|++|+.|+|..        +.+++.+....... ....+..+.++.|.+    ++.+.+...  ++
T Consensus        20 ~~m~-~ILviN~GSSS~K~~l~~~~--------~~~~l~~g~~e~ig~~~~~dh~~a~~~il~----~L~~~~~~~~~~~   86 (398)
T 4ijn_A           20 GSMV-TVLVVNSGSSSLKYAVVRPA--------SGEFLADGIIEEIGSGAVPDHDAALRAAFD----ELAAAGLHLEDLD   86 (398)
T ss_dssp             --CC-EEEEEEECSSCEEEEEECTT--------TCCEEEEEEECSTTBTTBCSHHHHHHHHHH----HHHHTTCCGGGSC
T ss_pred             cccc-cEEEEeCCchhheEEEEECC--------CCceeeeeeeeecCCCCccCHHHHHHHHHH----HHHHcCCCccccc
Confidence            4454 59999999999999999971        44466665443211 001233444444333    344555433  57


Q ss_pred             cceEEE-eecCCC--------Cchh---------------HHHH--HHHHHhhCCCCce-EEEeCcHH-------HHHHh
Q 020972           95 VRAVCL-AVSGVN--------HPTD---------------QQRI--LNWLRDIFPGNVR-LYVHNDAL-------AALAS  140 (319)
Q Consensus        95 i~~Igi-g~pG~~--------~~~~---------------~~~l--~~~L~~~~~~~~p-v~v~NDa~-------aa~~g  140 (319)
                      |.+||- -++|-.        +++-               ..+|  ....++.+|+ +| |.+-.-+.       +..++
T Consensus        87 i~aVGhRvVhGG~~f~~~~~I~~~vl~~l~~~~~lAPLHnp~nL~gI~a~~~~~P~-~p~vavfDTafh~tmp~~A~~y~  165 (398)
T 4ijn_A           87 LKAVGHRMVHGGKTFYKPSVVDDELIAKARELSPLAPLHNPPAIKGIEVARKLLPD-LPHIAVFDTAFFHDLPAPASTYA  165 (398)
T ss_dssp             EEEEEEEESCCTTTCCSCEECCHHHHHHHHHTGGGSTTTHHHHHHHHHHHHHHCTT-SCEEEEETTGGGTTCCHHHHCCS
T ss_pred             eeEEecCCCCCCcCCCCCeEeCHHHHHHHHhcCcCCcccCHHHHHHHHHHHHHCCC-CCeEEecCChhhccCcHHHHHcC
Confidence            888864 245532        2210               0112  2334566764 77 43332221       11111


Q ss_pred             -----------------------------hcCC----CCCeEEEEECccceeEeEecCCcEEe-eCC----CCCccCCcC
Q 020972          141 -----------------------------GTMG----KLHGCVLIAGTGTIAYGFTEDGRDAR-AAG----AGPILGDWG  182 (319)
Q Consensus       141 -----------------------------~~~g----~~~~v~v~~GTGigg~gii~dG~~~r-aGg----~Ghl~gd~G  182 (319)
                                                   +..|    .-+.|++.+|+|+..+ .+.||+.+. .-|    -|-+.|.. 
T Consensus       166 lP~~~~~~~giRryGFHGlS~~yva~r~a~~lgk~~~~~~lIv~HLGnGaSv~-Ai~~GksvDtsmG~tpleGl~mgtR-  243 (398)
T 4ijn_A          166 IDRELAETWHIKRYGFHGTSHEYVSQQAAIFLDRPLESLNQIVLHLGNGASAS-AVAGGKAVDTSMGLTPMEGLVMGTR-  243 (398)
T ss_dssp             SCHHHHHHTTCCCCCSCHHHHHHHHHHHHHHTTSCGGGCEEEEEEESSSEEEE-EEETTEEEEESCCSSTTSSSCCSSC-
T ss_pred             CCHHHHHhcCceEeCccHHhHHHHHHHHHHHhCCChHHccEEEEEECCCcEEE-EEECCEEEEeCCCCCcccCCCCCCC-
Confidence                                         0112    2378999999999665 568999875 111    12222211 


Q ss_pred             ChHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHcCCCChhhHHHHhccCCChHHHh--chhHHHHHHHHcCCHHHHHHHH
Q 020972          183 SGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWARIA--ALVPVVVSCAEAGDEVANKILQ  260 (319)
Q Consensus       183 sa~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a--~~~~~v~~~A~~GD~~A~~il~  260 (319)
                                       .|..++ ...-.+.+..+ -+.+++...++.+.....+.  ...+.|++++++||+.|+.+++
T Consensus       244 -----------------sG~iDp-~~l~~l~~~~~-~s~~e~~~~Lnk~sGLlg~sG~~D~R~i~~~a~~Gd~~A~la~d  304 (398)
T 4ijn_A          244 -----------------SGDIDP-GVIMYLWRTAG-MSVDDIESMLNRRSGVLGLGGASDFRKLRELIESGDEHAKLAYD  304 (398)
T ss_dssp             -----------------CCSCCH-HHHHHHHHTSC-CCHHHHHHHHHHSCHHHHHHCCSSHHHHHHHHHTTCHHHHHHHH
T ss_pred             -----------------CCCCCh-HHHHHHHHhcC-CCHHHHHHHHHhccCcceecCCCCHHHHHHHHHCCCHHHHHHHH
Confidence                             011111 11111111111 13344444443221100000  2367899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHh-cccCCCcchhhcccccccEEEEcchhhhcHHHHHHHHhhc
Q 020972          261 DSVEELALSVKAVVQRL-SLSGEGVTYTKILKEKVPLLMENILFLLSWLVVFLKLIEG  317 (319)
Q Consensus       261 ~a~~~Lg~~la~li~~l-~~~~~~~~~~~~~~~~~~ivl~Gg~~~~~~~~~~~~~~~~  317 (319)
                      .++..+++.|.++...| ++              ..|||.||+..++ +.+...++|+
T Consensus       305 ~f~yriak~Iga~aa~LG~v--------------DaIVfTGGIgEns-~~vr~~I~~~  347 (398)
T 4ijn_A          305 VYIHRLRKYIGAYMAVLGRT--------------DVISFTAGVGENV-PPVRRDALAG  347 (398)
T ss_dssp             HHHHHHHHHHHHHHHHHSSC--------------CEEEEEHHHHHHC-HHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHhCCC--------------cEEEECCcccccc-HHHHHHHHHH
Confidence            99999999999999988 44              5899999999444 4566666654

>3bex_A Type III pantothenate kinase; actin-like fold, ATP-binding, coenzyme A biosynthesis, cytoplasm, metal-binding, nucleotide-binding, potassium; HET: PAU; 1.51A {Thermotoga maritima} SCOP: c.55.1.13 c.55.1.13 PDB: 3bf1_A* 3bf3_A* 2gtd_A

Probab=98.41  E-value=3.1e-06  Score=75.41  Aligned_cols=127  Identities=18%  Similarity=0.141  Sum_probs=81.7

Q ss_pred             CCcEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceEE
Q 020972           20 GREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVC   99 (319)
Q Consensus        20 m~~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Ig   99 (319)
                      |..++|.||+|+|+++++++|.          ++++.+.+.++. .. .+.++....+.+.++.       ...++.++.
T Consensus         1 ~~~M~L~IDIGNT~ik~gl~~~----------~~l~~~~r~~T~-~~-~t~de~~~~l~~l~~~-------~~~~i~~i~   61 (249)
T 3bex_A            1 MDPMYLLVDVGNTHSVFSITED----------GKTFRRWRLSTG-VF-QTEDELFSHLHPLLGD-------AMREIKGIG   61 (249)
T ss_dssp             CCCEEEEEEECSSEEEEEEESS----------SSSCEEEEEECC-TT-CCHHHHHHHHHHHHGG-------GGGGEEEEE
T ss_pred             CCceEEEEEECCCeEEEEEEEC----------CEEEEEEEecCC-CC-CCHHHHHHHHHHHHhh-------ccccCCEEE
Confidence            4456899999999999999984          677777766442 22 4567766555554432       224688888


Q ss_pred             EeecCCCCchhHHHHHHHHHhhCCC----------CceEEEeC------cHHHHHHhhc-CCCCCeEEEEECccceeEeE
Q 020972          100 LAVSGVNHPTDQQRILNWLRDIFPG----------NVRLYVHN------DALAALASGT-MGKLHGCVLIAGTGTIAYGF  162 (319)
Q Consensus       100 ig~pG~~~~~~~~~l~~~L~~~~~~----------~~pv~v~N------Da~aa~~g~~-~g~~~~v~v~~GTGigg~gi  162 (319)
                      ++.+++   .....+.+.+++.|+.          ++++..+|      |-.++++|+. .-..+.++|-+||.+ .+-+
T Consensus        62 IsSVvp---~~~~~~~~~~~~~~~~~p~~v~~~~~gl~~~y~~P~~lG~DR~~~~~aa~~~~~~~~iVvD~GTA~-T~d~  137 (249)
T 3bex_A           62 VASVVP---TQNTVIERFSQKYFHISPIWVKAKNGCVKWNVKNPSEVGADRVANVVAFVKEYGKNGIIIDMGTAT-TVDL  137 (249)
T ss_dssp             EEESCH---HHHHHHHHHHHHHHSCCCEECCCCSSSSEECSSCGGGSCHHHHHHHHHHHHHTCSCEEEEEESSEE-EEEE
T ss_pred             EEcCcH---HHHHHHHHHHHHhcCCCeEEEEccCCCceeccCChhhcCHHHHHHHHHHHHHcCCCEEEEEcCCce-EEEE
Confidence            888763   3333455555554431          14555666      6666666653 123589999999998 4455


Q ss_pred             ecCCcEE
Q 020972          163 TEDGRDA  169 (319)
Q Consensus       163 i~dG~~~  169 (319)
                      +.+|+..
T Consensus       138 v~~g~~l  144 (249)
T 3bex_A          138 VVNGSYE  144 (249)
T ss_dssp             EETTEEE
T ss_pred             EeCCeEe
Confidence            5777654

>3h3n_X Glycerol kinase; ATP-binding, glycerol metabolism, nucleoti binding, phosphoprotein, transferase; 1.73A {Enterococcus casseliflavus} PDB: 3h3o_O 3flc_O 3h46_X 3h45_X 3d7e_O 1r59_O 1xup_O

Probab=98.40  E-value=1.1e-06  Score=86.26  Aligned_cols=75  Identities=16%  Similarity=0.265  Sum_probs=63.9

Q ss_pred             CcEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCC------CccccCHHHHHHHHHHHHHHHHHHcCCCccc
Q 020972           21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCS------NHNSVGEDAARETIEKVMADALLKSGSNRSA   94 (319)
Q Consensus        21 ~~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~------~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~   94 (319)
                      ++|+||||+|+|++|++++|.         +|+++.+.+.+..      ...+.+++++++.+.+.+++++++.+.++.+
T Consensus         4 ~~~~lgIDiGtts~k~~l~d~---------~G~il~~~~~~~~~~~p~~g~~e~dp~~~~~~~~~~i~~~~~~~~~~~~~   74 (506)
T 3h3n_X            4 KNYVMAIDQGTTSSRAIIFDR---------NGKKIGSSQKEFPQYFPKSGWVEHNANEIWNSVQSVIAGAFIESGIRPEA   74 (506)
T ss_dssp             CCEEEEEEECSSEEEEEEEET---------TSCEEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHHHTCCGGG
T ss_pred             CCEEEEEEcCCCceEEEEECC---------CCCEEEEEEEecCccCCCCCcEEECHHHHHHHHHHHHHHHHHHcCCChhh
Confidence            469999999999999999999         9999988765422      1234689999999999999999988887789


Q ss_pred             cceEEEeecC
Q 020972           95 VRAVCLAVSG  104 (319)
Q Consensus        95 i~~Igig~pG  104 (319)
                      |.+|||+.++
T Consensus        75 I~~Igis~~~   84 (506)
T 3h3n_X           75 IAGIGITNQR   84 (506)
T ss_dssp             EEEEEEEECS
T ss_pred             eEEEEeeCCc
Confidence            9999999875

>2dpn_A Glycerol kinase; thermus thermophilus HB8, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}

Probab=98.40  E-value=7.6e-07  Score=87.02  Aligned_cols=74  Identities=22%  Similarity=0.168  Sum_probs=62.6

Q ss_pred             cEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCC------ccccCHHHHHHHHHHHHHHHHHHcCCCcccc
Q 020972           22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSN------HNSVGEDAARETIEKVMADALLKSGSNRSAV   95 (319)
Q Consensus        22 ~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~------~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i   95 (319)
                      .|+||||+|+|++|++++|.         +|+++.+.+.+...      ..+.+++++++.+.+.+++++++.+.+..+|
T Consensus         2 ~~~lgiDiGtT~~k~~l~d~---------~g~i~~~~~~~~~~~~p~~g~~e~d~~~~~~~i~~~i~~~~~~~~~~~~~i   72 (495)
T 2dpn_A            2 AFLLALDQGTTSSRAILFTL---------EGRPVAVAKREFRQLYPKPGWVEHDPLEIWETTLWAAREVLRRAGAEAGEV   72 (495)
T ss_dssp             -CEEEEEECSSEEEEEEECT---------TSCEEEEEEEECCEECSSTTCCEECHHHHHHHHHHHHHHHHHHTTCCGGGC
T ss_pred             cEEEEEeeCCcceEEEEECC---------CCCEEEEEEEeeceecCCCCcEeeCHHHHHHHHHHHHHHHHHhcCCCcccE
Confidence            48999999999999999999         99999887664321      1236899999999999999999887777789


Q ss_pred             ceEEEeecC
Q 020972           96 RAVCLAVSG  104 (319)
Q Consensus        96 ~~Igig~pG  104 (319)
                      .+|||+.+|
T Consensus        73 ~~Igis~~~   81 (495)
T 2dpn_A           73 LALGITNQR   81 (495)
T ss_dssp             CEEEEEECS
T ss_pred             EEEEEeCCC
Confidence            999999996

>3hz6_A Xylulokinase; xylulose, structural genomic, chromob violaceum, manolate, transferase, structural genomi 2; HET: ADP XUL; 1.65A {Chromobacterium violaceum} PDB: 3kzb_A*

Probab=98.35  E-value=1.4e-06  Score=85.44  Aligned_cols=75  Identities=13%  Similarity=0.039  Sum_probs=63.1

Q ss_pred             CCcEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCC------CccccCHHHHHHHHHHHHHHHHHHcCCCcc
Q 020972           20 GREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCS------NHNSVGEDAARETIEKVMADALLKSGSNRS   93 (319)
Q Consensus        20 m~~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~------~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~   93 (319)
                      ||+|+||||+|+|++|++++|.         +|+++.+.+.+..      ...+.+++++++.+.+++++++ +.+.++.
T Consensus         3 mm~~~lgIDiGtts~k~~l~d~---------~G~il~~~~~~~~~~~p~~g~~e~dp~~~~~~~~~~i~~~~-~~~~~~~   72 (511)
T 3hz6_A            3 LAFYIATFDIGTTEVKAALADR---------DGGLHFQRSIALETYGDGNGPVEQDAGDWYDAVQRIASSWW-QSGVDAR   72 (511)
T ss_dssp             CCCEEEEEEECSSEEEEEEECT---------TSCEEEEEEEECCCBSTTSSCCEECHHHHHHHHHHHHHHHH-TTTCCGG
T ss_pred             cccEEEEEEeCCCceEEEEECC---------CCCEEEEEEeecceecCCCCCEEECHHHHHHHHHHHHHHHH-hcCCChh
Confidence            5679999999999999999999         9999988765421      1234689999999999999998 7777778


Q ss_pred             ccceEEEeecC
Q 020972           94 AVRAVCLAVSG  104 (319)
Q Consensus        94 ~i~~Igig~pG  104 (319)
                      +|.+|||+..+
T Consensus        73 ~I~~Igis~q~   83 (511)
T 3hz6_A           73 RVSAIVLSGQM   83 (511)
T ss_dssp             GEEEEEEEECC
T ss_pred             HeEEEEEeccc
Confidence            89999998765

>2d4w_A Glycerol kinase; alpha and beta protein, ribonuclease H-like motif, actin- like ATPase domain, transferase; 2.30A {Cellulomonas SP}

Probab=98.33  E-value=1.9e-06  Score=84.33  Aligned_cols=74  Identities=16%  Similarity=0.214  Sum_probs=63.3

Q ss_pred             cEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCC------ccccCHHHHHHHHHHHHHHHHHHcCCCcccc
Q 020972           22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSN------HNSVGEDAARETIEKVMADALLKSGSNRSAV   95 (319)
Q Consensus        22 ~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~------~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i   95 (319)
                      .|+||||+|+|++|++++|.         +|+++.+.+.+...      ..+.+++++++.+.+.+++++++.+..+.+|
T Consensus         2 ~~~lgiDiGtts~k~~l~d~---------~G~i~~~~~~~~~~~~p~~g~~e~d~~~~~~~i~~~i~~~~~~~~~~~~~i   72 (504)
T 2d4w_A            2 DYVLAIDQGTTSSRAIVFDH---------SGEIYSTGQLEHDQIFPRAGWVEHNPEQIWNNVREVVGLALTRGNLTHEDI   72 (504)
T ss_dssp             CEEEEEEECSSEEEEEEECT---------TSCEEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHHTTCCGGGE
T ss_pred             CEEEEEecCCcceEEEEECC---------CCCEEEEEEEecceecCCCCceeECHHHHHHHHHHHHHHHHHHcCCCcccE
Confidence            48999999999999999999         99999887665321      1235899999999999999999887777789


Q ss_pred             ceEEEeecC
Q 020972           96 RAVCLAVSG  104 (319)
Q Consensus        96 ~~Igig~pG  104 (319)
                      .+|||+.+|
T Consensus        73 ~~Igis~~g   81 (504)
T 2d4w_A           73 AAVGITNQR   81 (504)
T ss_dssp             EEEEEEECS
T ss_pred             EEEEEeCCC
Confidence            999999998

>3l0q_A Xylulose kinase; xlylulose kinase, SGX, PSI, structural genomics, protein structure initiative; HET: MSE XUL EPE; 1.61A {Yersinia pseudotuberculosis} PDB: 3gg4_A*

Probab=98.29  E-value=2.1e-06  Score=85.05  Aligned_cols=73  Identities=14%  Similarity=0.191  Sum_probs=61.5

Q ss_pred             CcEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCC------CccccCHHHHHHHHHHHHHHHHHHcCCCccc
Q 020972           21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCS------NHNSVGEDAARETIEKVMADALLKSGSNRSA   94 (319)
Q Consensus        21 ~~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~------~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~   94 (319)
                      ++|+||||+|+|++|++++|.         +|+++.+.+.+..      ...+.+++++++.+.+.+++++++.+..+.+
T Consensus         4 ~~~~lgIDiGtts~ka~l~d~---------~G~il~~~~~~~~~~~p~~g~~eqdp~~~~~~~~~~i~~~~~~~~~~~~~   74 (554)
T 3l0q_A            4 ASYFIGVDVGTGSARAGVFDL---------QGRMVGQASREITMFKPKADFVEQSSENIWQAVCNAVRDAVNQADINPIQ   74 (554)
T ss_dssp             CCEEEEEEECSSEEEEEEEET---------TSCEEEEEEEECCCEEEETTEEEECHHHHHHHHHHHHHHHHHHHTCCGGG
T ss_pred             CcEEEEEEECcccEEEEEECC---------CCCEEEEEEEecccccCCCCccccCHHHHHHHHHHHHHHHHHHcCCCHhH
Confidence            459999999999999999999         9999988765421      2234689999999999999999988887788


Q ss_pred             cceEEEee
Q 020972           95 VRAVCLAV  102 (319)
Q Consensus        95 i~~Igig~  102 (319)
                      |.+||++.
T Consensus        75 I~~Igis~   82 (554)
T 3l0q_A           75 VKGLGFDA   82 (554)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEcC
Confidence            99998853

>3djc_A Type III pantothenate kinase; structural genomics, putative transfera 2, protein structure initiative; 2.40A {Legionella pneumophila subsp}

Probab=98.25  E-value=3e-05  Score=69.63  Aligned_cols=125  Identities=14%  Similarity=0.091  Sum_probs=82.0

Q ss_pred             EEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceEEEee
Q 020972           23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV  102 (319)
Q Consensus        23 ~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Igig~  102 (319)
                      ++|+||+|+|+|+++++|.          ++++.+.+.++. .  .+.+++    ...+.++++..+.+..+|.+++++.
T Consensus         3 MlL~IDIGNT~iK~gl~d~----------~~l~~~~r~~T~-~--~t~de~----~~~l~~ll~~~~~~~~~I~~iiISS   65 (266)
T 3djc_A            3 LILCIDVGNSHIYGGVFDG----------DEIKLRFRHTSK-V--STSDEL----GIFLKSVLRENNCSPETIRKIAICS   65 (266)
T ss_dssp             CEEEEEECSSEEEEEEEET----------TEEEEEEEEECS-C--CCHHHH----HHHHHHHHHTTTCCGGGCCEEEEEE
T ss_pred             eEEEEEECCCeEEEEEEEC----------CEEEEEEEecCC-C--CCHHHH----HHHHHHHHHHcCCChhhceEEEEec
Confidence            6999999999999999985          688888776543 2  466664    3445556677777777899999999


Q ss_pred             cCCCCchhHHHHHHHHHhhCCC-----------CceEEEeC------cHHHHHHhhc--CCCCCeEEEEECccceeEeEe
Q 020972          103 SGVNHPTDQQRILNWLRDIFPG-----------NVRLYVHN------DALAALASGT--MGKLHGCVLIAGTGTIAYGFT  163 (319)
Q Consensus       103 pG~~~~~~~~~l~~~L~~~~~~-----------~~pv~v~N------Da~aa~~g~~--~g~~~~v~v~~GTGigg~gii  163 (319)
                      +++.   -...+...+++.|+.           +.++..+|      |--++++++.  .+..+.++|-+||=+ .+=++
T Consensus        66 Vvp~---~~~~l~~~~~~~~~~~~~~v~~~~~~g~~~~y~~P~~lG~DR~~~~vaA~~~~~~~~~iVVD~GTA~-T~d~v  141 (266)
T 3djc_A           66 VVPQ---VDYSLRSACVKYFSIDPFLLQAGVKTGLNIKYRNPVEVGADRIANAIAATHSFPNQNIIVIDFGTAT-TFCAI  141 (266)
T ss_dssp             SCHH---HHHHHHHHHHHHTCCCCEECCSSSCCCCEECCSSGGGSCHHHHHHHHHHHHHSTTSEEEEEEESSEE-EEEEE
T ss_pred             chHh---HHHHHHHHHHHHcCCCeEEEcCCCCCCcccCCCChhhhHHHHHHHHHHHHHhcCCCCEEEEECCCee-EEEEE
Confidence            8853   344566667766641           02222333      4344455443  233589999999987 44343


Q ss_pred             -cCCcE
Q 020972          164 -EDGRD  168 (319)
Q Consensus       164 -~dG~~  168 (319)
                       .+|+.
T Consensus       142 ~~~g~~  147 (266)
T 3djc_A          142 SHKKAY  147 (266)
T ss_dssp             CTTSEE
T ss_pred             cCCCcE
Confidence             34543

>3ezw_A Glycerol kinase; glycerol metabolism, allosteric regulation, microfluidics, in SITU DATA collection, ATP-binding, kinase binding; 2.00A {Escherichia coli} PDB: 1gla_G 1bo5_O* 1bot_O 1glb_G* 1glc_G* 1gld_G* 1gle_G* 1glf_O* 1bu6_O 1bwf_Y* 1glj_Y* 1gll_Y*

Probab=98.25  E-value=3.2e-06  Score=83.21  Aligned_cols=75  Identities=16%  Similarity=0.205  Sum_probs=63.1

Q ss_pred             CcEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCC------CCccccCHHHHHHHHHHHHHHHHHHcCCCccc
Q 020972           21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGC------SNHNSVGEDAARETIEKVMADALLKSGSNRSA   94 (319)
Q Consensus        21 ~~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~------~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~   94 (319)
                      .+|+||||+|.|++|++|+|.         +|+++.+.+.+.      ....+++++++++.+.+.++++++++++++.+
T Consensus         3 kkYvlgID~GTss~Ka~l~d~---------~G~~va~~~~~~~~~~p~~G~~Eqdp~~~w~~~~~~i~~~l~~~~~~~~~   73 (526)
T 3ezw_A            3 KKYIVALDQGTTSSRAVVMDH---------DANIISVSQREFEQIYPKPGWVEHDPMEIWATQSSTLVEVLAKADISSDQ   73 (526)
T ss_dssp             CCEEEEEEECSSEEEEEEECT---------TCCEEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHHHTCCGGG
T ss_pred             ceEEEEEEccccceeeeEEcC---------CCCEEEEEEEecCcccCCCCcEEECHHHHHHHHHHHHHHHHHHcCCChhh
Confidence            479999999999999999999         999998765431      12234689999999999999999999998899


Q ss_pred             cceEEEeecC
Q 020972           95 VRAVCLAVSG  104 (319)
Q Consensus        95 i~~Igig~pG  104 (319)
                      |.+|||..-+
T Consensus        74 I~aIgis~q~   83 (526)
T 3ezw_A           74 IAAIGITNQR   83 (526)
T ss_dssp             EEEEEEEECS
T ss_pred             EEEEEEeCCC
Confidence            9998886544

>3h6e_A Carbohydrate kinase, FGGY; novosphingobium aromaticivorans,strain 12444, SGX, transferase; 2.50A {Novosphingobium aromaticivorans}

Probab=98.16  E-value=3e-06  Score=82.54  Aligned_cols=72  Identities=13%  Similarity=0.054  Sum_probs=53.9

Q ss_pred             cCCCcEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCC-----CccccCHHHHHHHHHHHHHHHHHHcCCCc
Q 020972           18 SGGREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCS-----NHNSVGEDAARETIEKVMADALLKSGSNR   92 (319)
Q Consensus        18 ~~m~~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~-----~~~~~~~~~~~~~i~~~i~~~l~~~~~~~   92 (319)
                      +.||+|+||||+|+|++|++++|.         +|+++.+.+.+..     ...+.+++++++.+.+.+++++ +     
T Consensus         2 ~~mm~~~lgIDiGTts~Ka~l~d~---------~G~i~~~~~~~~~~~~~~g~~eqdp~~~~~~~~~~i~~~~-~-----   66 (482)
T 3h6e_A            2 SLSTGATIVIDLGKTLSKVSLWDL---------DGRMLDRQVRPSIPLEIDGIRRLDAPDTGRWLLDVLSRYA-D-----   66 (482)
T ss_dssp             ------CEEEEECSSEEEEEEECT---------TSCEEEEEEEECCCEESSSCEECCHHHHHHHHHHHHHHTT-T-----
T ss_pred             chhhceEEEEEcCCCCeEEEEEEC---------CCcEEEEEEecCCcccCCCceeECHHHHHHHHHHHHHHHH-h-----
Confidence            456789999999999999999998         9999988776432     1224689999999988888875 2     


Q ss_pred             cccceEEEeecC
Q 020972           93 SAVRAVCLAVSG  104 (319)
Q Consensus        93 ~~i~~Igig~pG  104 (319)
                      .+|.+|||+..+
T Consensus        67 ~~I~aIgis~~~   78 (482)
T 3h6e_A           67 HPVTTIVPVGHG   78 (482)
T ss_dssp             SCCCEEEEEECS
T ss_pred             cCCCEEEEecCc
Confidence            478999998876

>2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase; HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A

Probab=98.13  E-value=6.5e-06  Score=80.11  Aligned_cols=71  Identities=15%  Similarity=0.127  Sum_probs=58.8

Q ss_pred             EEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCC------CccccCHHHHHHHHHHHHHHHHHHcCCCccccc
Q 020972           23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCS------NHNSVGEDAARETIEKVMADALLKSGSNRSAVR   96 (319)
Q Consensus        23 ~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~------~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~   96 (319)
                      |+||||+|+|++|++++|.         +|+++.+.+.+..      ...+.+++++++.+.+.+++++++..  ..+|.
T Consensus         1 ~~lgiDiGtt~~k~~l~d~---------~g~~l~~~~~~~~~~~p~~g~~e~d~~~~~~~i~~~i~~~~~~~~--~~~i~   69 (484)
T 2itm_A            1 MYIGIDLGTSGVKVILLNE---------QGEVVAAQTEKLTVSRPHPLWSEQDPEQWWQATDRAMKALGDQHS--LQDVK   69 (484)
T ss_dssp             CEEEEEECSSEEEEEEECT---------TSCEEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHHSC--CTTCC
T ss_pred             CEEEEEecCcccEEEEECC---------CCCEEEEEEeccccccCCCCCEeECHHHHHHHHHHHHHHHHHhCC--ccceE
Confidence            4799999999999999999         9999988765432      11236889999999999999987753  45799


Q ss_pred             eEEEeecC
Q 020972           97 AVCLAVSG  104 (319)
Q Consensus        97 ~Igig~pG  104 (319)
                      +|||+.+|
T Consensus        70 ~Igis~~~   77 (484)
T 2itm_A           70 ALGIAGQM   77 (484)
T ss_dssp             EEEEEECS
T ss_pred             EEEEcCCc
Confidence            99999999

>3ll3_A Gluconate kinase; xylulose kinase, nysgx, ATP, ADP, xylulose, transferase, structural genomics, PSI-2, protein structure initiative; HET: ATP DXP XUL ADP; 2.00A {Lactobacillus acidophilus} PDB: 3gbt_A*

Probab=98.13  E-value=8.6e-06  Score=79.75  Aligned_cols=71  Identities=17%  Similarity=0.245  Sum_probs=59.2

Q ss_pred             cEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCC------CccccCHHHHHHHHHHHHHHHHHHcCCCcccc
Q 020972           22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCS------NHNSVGEDAARETIEKVMADALLKSGSNRSAV   95 (319)
Q Consensus        22 ~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~------~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i   95 (319)
                      +|+||||+|+|++|++++|.         +|+++.+.+.+..      ...+.+++++++.+.+.+++++++.+   .+|
T Consensus         4 ~~~lgIDiGtts~K~~l~d~---------~G~il~~~~~~~~~~~p~~g~~e~dp~~~~~~~~~~i~~~~~~~~---~~I   71 (504)
T 3ll3_A            4 KYIIGMDVGTTATKGVLYDI---------NGKAVASVSKGYPLIQTKVGQAEEDPKLIFDAVQEIIFDLTQKID---GKI   71 (504)
T ss_dssp             EEEEEEEECSSEEEEEEEET---------TSCEEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHTCS---SEE
T ss_pred             CEEEEEEecCCceEEEEEcC---------CCCEEEEEEeecceecCCCCcEEECHHHHHHHHHHHHHHHHHhCC---CCe
Confidence            59999999999999999999         9999988766422      12346899999999999999988764   579


Q ss_pred             ceEEEeecC
Q 020972           96 RAVCLAVSG  104 (319)
Q Consensus        96 ~~Igig~pG  104 (319)
                      .+|||+.-+
T Consensus        72 ~~Igis~q~   80 (504)
T 3ll3_A           72 AAISWSSQM   80 (504)
T ss_dssp             EEEEEEECS
T ss_pred             EEEEEECCC
Confidence            999988765

>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid}

Probab=98.09  E-value=0.0012  Score=58.63  Aligned_cols=134  Identities=18%  Similarity=0.072  Sum_probs=85.8

Q ss_pred             CcEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCcc---ccCHHHHHHHHHHHHHHHHHHcCCCccccce
Q 020972           21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHN---SVGEDAARETIEKVMADALLKSGSNRSAVRA   97 (319)
Q Consensus        21 ~~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~---~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~   97 (319)
                      ..+++|||+|.+++|++++|.         +++++.....+.....   -.+.+...+.+...++.+....+..   +..
T Consensus        27 ~~~~~gIDiGS~s~k~vi~~~---------~~~~l~~~~~~~~~l~~g~i~d~~~~~~~l~~~~~~~~~~~~~~---~~~   94 (272)
T 3h1q_A           27 PPYKVGVDLGTADIVLVVTDQ---------EGIPVAGALKWASVVKDGLVVDYIGAIQIVRELKAKVERLLGSE---LFQ   94 (272)
T ss_dssp             SCCEEEEECCSSEEEEEEECT---------TCCEEEEEEEECCCCBTTBCTTHHHHHHHHHHHHHHHHHHSSSC---CCE
T ss_pred             CCEEEEEEcccceEEEEEECC---------CCcEEEEEeecccccCCCEEEcHHHHHHHHHHHHHHHHHhcCCc---cCe
Confidence            358999999999999999988         7888877654322111   1234666666666666665554432   334


Q ss_pred             EEEeecCCCCchhHHHHHHHHHhhCCCCceEEEeCcHHHHHHhhcCCCCCeEEEEECccceeEeEecCCcEEe
Q 020972           98 VCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTMGKLHGCVLIAGTGTIAYGFTEDGRDAR  170 (319)
Q Consensus        98 Igig~pG~~~~~~~~~l~~~L~~~~~~~~pv~v~NDa~aa~~g~~~g~~~~v~v~~GTGigg~gii~dG~~~r  170 (319)
                      +.+.+|..........+.... +.++. ....+.++..+++++.  +..+.+++=+|-|+--..++.+|++..
T Consensus        95 ~v~tvp~~~~~~~~~~~~~~~-~~~g~-~~~~i~~e~~A~a~~~--~~~~~~viDiGggst~~~~~~~g~~~~  163 (272)
T 3h1q_A           95 AATAIPPGTVGRNAEACGHVV-AGAGL-ELVTLVDEPVAAARAL--GINDGIVVDIGGGTTGIAVIEKGKITA  163 (272)
T ss_dssp             EEEECCSCC---CTTHHHHHH-HHTTC-EEEEEECHHHHHHHHH--TCSSEEEEEECSSCEEEEEEETTEEEE
T ss_pred             EEEEcCCCCCHHHHHHHHHHH-HHcCC-eeeecccHHHHHHHHH--cCCCEEEEEECCCcEEEEEEECCEEEE
Confidence            557777754333333344444 44552 3578889998887753  345688999999986665667777654

>3r9p_A ACKA; ssgcid, seattle structural genomics center for infectious DI acetate kinase, transferase; HET: PGE; 1.90A {Mycobacterium avium subsp} PDB: 3p4i_A 4dq8_A

Probab=97.90  E-value=0.0072  Score=56.54  Aligned_cols=247  Identities=16%  Similarity=0.119  Sum_probs=137.9

Q ss_pred             EEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCC---ccccCHHHHHHHHHHHHHHHHHHcCCC--ccccce
Q 020972           23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSN---HNSVGEDAARETIEKVMADALLKSGSN--RSAVRA   97 (319)
Q Consensus        23 ~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~---~~~~~~~~~~~~i~~~i~~~l~~~~~~--~~~i~~   97 (319)
                      .+|.|..|.+++|+.|+|..        +.+++.+.......   ....+-++.++.|.+.    +.+.+..  .++|.+
T Consensus        13 ~iLviN~GSSSlK~~l~~~~--------~~~~l~~G~~e~ig~~~~~~~~h~~a~~~il~~----L~~~~~~~~~~~i~a   80 (391)
T 3r9p_A           13 RVLVINSGSSSLKFQLVDPE--------FGVAASTGIVERIGEESSPVPDHDAALRRAFDM----LAGDGVDLNTAGLVA   80 (391)
T ss_dssp             EEEEEEECSSCEEEEEEETT--------TTEEEEEEEECCTTCTTCSCCSHHHHHHHHHHH----HHHTTCCTTTTTEEE
T ss_pred             eEEEEecCchhheeEEEecC--------CCceEEEEEEeecCCCccCccCHHHHHHHHHHH----HHhcCCCCcccceeE
Confidence            48999999999999999962        45666665543211   1112344555544443    3444432  357888


Q ss_pred             EEE-eecCCC--------Cchh---------------HHHH--HHHHHhhCCCCce-EEEeCcHH-------HHHHh---
Q 020972           98 VCL-AVSGVN--------HPTD---------------QQRI--LNWLRDIFPGNVR-LYVHNDAL-------AALAS---  140 (319)
Q Consensus        98 Igi-g~pG~~--------~~~~---------------~~~l--~~~L~~~~~~~~p-v~v~NDa~-------aa~~g---  140 (319)
                      ||. -+.|-.        +++-               ..+|  ....++.+|+ +| |.+-.-+.       +..++   
T Consensus        81 VGhRvVhGG~~f~~~~~I~~~vl~~l~~~~~lAPLHnp~nL~gI~a~~~~~P~-~p~VavFDTaFh~tmp~~A~~y~lP~  159 (391)
T 3r9p_A           81 VGHRVVHGGNTFYRPTVLDDAVIARLHELSELAPLHNPPALQGIEVARRLLPD-IAHVAVFDTGFFHDLPPAAATYAIDR  159 (391)
T ss_dssp             EEEEESCCTTTCCSCEECCHHHHHHHHTTGGGSTTTHHHHHHHHHHHHHHCTT-SEEEEEETTGGGTTCCHHHHCCSSCH
T ss_pred             EecCCCCCCCCCCCCEECcHHHHHHHHhcCcCCcccCHHHHHHHHHHHHHCCC-CCEEEEECChhhccccHHHHHcCCCH
Confidence            864 245532        2110               0111  2335667875 78 44443221       11111   


Q ss_pred             --------------------------hcCCC----CCeEEEEECccceeEeEecCCcEEe-eC----CCCCccCCcCChH
Q 020972          141 --------------------------GTMGK----LHGCVLIAGTGTIAYGFTEDGRDAR-AA----GAGPILGDWGSGY  185 (319)
Q Consensus       141 --------------------------~~~g~----~~~v~v~~GTGigg~gii~dG~~~r-aG----g~Ghl~gd~Gsa~  185 (319)
                                                +..|.    -+.|++-+|.|+..+ -+.||+.+- .-    .-|-+.|..    
T Consensus       160 e~~~~~giRryGFHGlS~~yva~r~a~~lgk~~~~~~lIv~HLGnGaSv~-Ai~~GksvDtsmG~tpleGl~mgtR----  234 (391)
T 3r9p_A          160 ELADRWQIRRYGFHGTSHRYVSEQAAAFLDRPLRGLKQIVLHLGNGCSAS-AIAGTRPLDTSMGLTPLEGLVMGTR----  234 (391)
T ss_dssp             HHHHHTTCSCCCSCHHHHHHHHHHHHHHTTSCGGGCEEEEEEESSSEEEE-EEETTEEEEESCCSSTTSSSCCSSC----
T ss_pred             HHHHhcCceEeceeHHhHHHHHHHHHHHhCCChHHcCEEEEEeCCCcEeE-EEECCEEEeeCCCCCcccCCCCCCC----
Confidence                                      01132    378999999998665 558999874 11    122222211    


Q ss_pred             HHHHHHHHHHHHHhcCCCCCchhHHHHHHHcCCCChhhHHHHhccCCChHHHh--chhHHHHHHHHcCCHHHHHHHHHHH
Q 020972          186 GIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWARIA--ALVPVVVSCAEAGDEVANKILQDSV  263 (319)
Q Consensus       186 ~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a--~~~~~v~~~A~~GD~~A~~il~~a~  263 (319)
                                    .|..++..+. .+.+..+. +.+++...++++.....+.  ...+.|.+++++||+.|+.+++-++
T Consensus       235 --------------sGdiDp~~l~-~l~~~~g~-s~~ei~~~Lnk~SGLlglsG~~D~R~v~~~~~~gd~~A~lA~d~f~  298 (391)
T 3r9p_A          235 --------------SGDIDPSIVS-YLCHTAGM-GVDDVESMLNHRSGVVGLSGVRDFRRLRELIESGDGAAQLAYSVFT  298 (391)
T ss_dssp             --------------CCSCCTHHHH-HHHHHSCC-CHHHHHHHHHHSCHHHHHHSCSCSHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             --------------CCCCChHHHH-HHHHhcCC-CHHHHHHHHHhccCceeecCCCCHHHHHHHHHCCCHHHHHHHHHHH
Confidence                          1111121111 12222221 3444444443221100010  2357888999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcccCCCcchhhcccccccEEEEcchhhhcHHHHHHHHhhc
Q 020972          264 EELALSVKAVVQRLSLSGEGVTYTKILKEKVPLLMENILFLLSWLVVFLKLIEG  317 (319)
Q Consensus       264 ~~Lg~~la~li~~l~~~~~~~~~~~~~~~~~~ivl~Gg~~~~~~~~~~~~~~~~  317 (319)
                      ..+++.|.++...|+-             ...||+.||+.. +...+...++|+
T Consensus       299 yri~k~Iga~aa~Lg~-------------vDaIVfTGGIge-ns~~vR~~i~~~  338 (391)
T 3r9p_A          299 HRLRKYIGAYLAVLGH-------------TDVISFTAGIGE-NDAAVRRDAVSG  338 (391)
T ss_dssp             HHHHHHHHHHHHHHSS-------------CCEEEEEHHHHH-HCHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhCC-------------CCEEEECccccc-CCHHHHHHHHHH
Confidence            9999999999988841             247999999994 434566666653

>3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,, transferase, structural genomics, PSI-2; 2.00A {Bifidobacterium adolescentis ATCC15703}

Probab=97.90  E-value=3.6e-05  Score=75.55  Aligned_cols=70  Identities=17%  Similarity=0.153  Sum_probs=55.4

Q ss_pred             CcEEEEEEcCccceeEEEEe-CccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceEE
Q 020972           21 REVILGLDGGTTSTVCICMP-VISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVC   99 (319)
Q Consensus        21 ~~~~lGIDiGGTk~~~~l~d-~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Ig   99 (319)
                      ++|+||||+|+|++|++++| .         +|+++.+.+.+.....+.+++++++.+.+++++    .+. ..+|.+||
T Consensus         4 ~~~~lgIDiGtts~ka~l~d~~---------~G~i~~~~~~~~~g~~e~d~~~~~~~i~~~l~~----~~~-~~~I~~Ig   69 (515)
T 3i8b_A            4 RTLVAGVDTSTQSCKVRVTDAE---------TGELVRFGQAKHPNGTSVDPSYWWSAFQEAAEQ----AGG-LDDVSALA   69 (515)
T ss_dssp             SCEEEEEEECSSEEEEEEEETT---------TCCEEEEEEEECCSSSEECTHHHHHHHHHHHHH----TTC-STTEEEEE
T ss_pred             CcEEEEEEeccccEEEEEEECC---------CCeEEEEEEEeCCCCceECHHHHHHHHHHHHHh----cCC-ccCceEEE
Confidence            45999999999999999999 8         999999887654333456888888877666654    444 46899999


Q ss_pred             EeecC
Q 020972          100 LAVSG  104 (319)
Q Consensus       100 ig~pG  104 (319)
                      |+..+
T Consensus        70 is~q~   74 (515)
T 3i8b_A           70 VGGQQ   74 (515)
T ss_dssp             EEECS
T ss_pred             EeCCc
Confidence            99887

>2uyt_A Rhamnulokinase; rhamnose degradation, IN-LINE phosphoryl transfer, hexokinas actin superfamily, L-rhamnulose kinase, rhamnose metabolism kinase; HET: LRH ADP; 1.55A {Escherichia coli} PDB: 2cgk_A 2cgj_A* 2cgl_A*

Probab=97.71  E-value=3.6e-05  Score=74.92  Aligned_cols=73  Identities=8%  Similarity=-0.017  Sum_probs=53.6

Q ss_pred             cEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecC----------CCCccccCHHHHHHHHHHHHHHHHHHcCCC
Q 020972           22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAG----------CSNHNSVGEDAARETIEKVMADALLKSGSN   91 (319)
Q Consensus        22 ~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~----------~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~   91 (319)
                      +++||||+|+|++|++++|.         +|+++.+.+.+          .....+.+++++++.+.++++++...    
T Consensus         4 ~~~lgiDiGtts~k~~l~d~---------~g~~~~~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~~~~~~~~----   70 (489)
T 2uyt_A            4 RNCVAVDLGASSGRVMLARY---------ERECRSLTLREIHRFNNGLHSQNGYVTWDVDSLESAIRLGLNKVCAA----   70 (489)
T ss_dssp             EEEEEEEECSSEEEEEEEEE---------EGGGTEEEEEEEEEEECCCEEETTEEECCHHHHHHHHHHHHHHHHHT----
T ss_pred             ceEEEEEecCCCceEEEEEe---------cCccceEEEEEEeecCCCccccCCeEEECHHHHHHHHHHHHHHHHhC----
Confidence            47999999999999999998         88876654321          11112357889999998888887652    


Q ss_pred             ccccceEEEee----cCCCC
Q 020972           92 RSAVRAVCLAV----SGVNH  107 (319)
Q Consensus        92 ~~~i~~Igig~----pG~~~  107 (319)
                      ..+|.+|||+.    ++++|
T Consensus        71 ~~~i~~Igis~q~~~~v~~D   90 (489)
T 2uyt_A           71 GIAIDSIGIDTWGVDFVLLD   90 (489)
T ss_dssp             TCCCCEEEEEECSSCEEEEC
T ss_pred             CCCceEEEEecCcccEEEEC
Confidence            24799999998    66544

>2h3g_X Biosynthetic protein; pantothenate kinase, anthrax, type III pantothenate kinase, COAX, COAA, askha; 2.00A {Bacillus anthracis str}

Probab=97.63  E-value=0.0017  Score=58.11  Aligned_cols=124  Identities=20%  Similarity=0.188  Sum_probs=79.5

Q ss_pred             EEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceEEEee
Q 020972           23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV  102 (319)
Q Consensus        23 ~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Igig~  102 (319)
                      ++|.||+|.|+++++++|.          ++++...+..+...  .+.++...    .+.++++..+.++.++.++.++.
T Consensus         1 MlL~IDIGNT~ik~gl~~~----------~~l~~~~r~~T~~~--~t~de~~~----~l~~ll~~~~~~~~~i~~iiISS   64 (268)
T 2h3g_X            1 MIFVLDVGNTNAVLGVFEE----------GELRQHWRMETDRH--KTEDEYGM----LVKQLLEHEGLSFEDVKGIIVSS   64 (268)
T ss_dssp             CEEEEEECSSEEEEEEEET----------TEEEEEEEEECCTT--CCHHHHHH----HHHHHHHHTTCCGGGCCEEEEEE
T ss_pred             CEEEEEECcCcEEEEEEEC----------CEEEEEEEecCCCc--CCHHHHHH----HHHHHHHHcCCCcccCcEEEEEc
Confidence            3789999999999999984          67777776644322  35565444    44556666677667888888877


Q ss_pred             cCCCCchhHHHHHHHHHhhCCCCceEEE------------eC------cHHHHHHhhc--CCCCCeEEEEECccceeEeE
Q 020972          103 SGVNHPTDQQRILNWLRDIFPGNVRLYV------------HN------DALAALASGT--MGKLHGCVLIAGTGTIAYGF  162 (319)
Q Consensus       103 pG~~~~~~~~~l~~~L~~~~~~~~pv~v------------~N------Da~aa~~g~~--~g~~~~v~v~~GTGigg~gi  162 (319)
                      +.   |.-...+.+.+++.|+. .|+++            +|      |--++++|+.  .+ .+.++|-+||=+ .+=+
T Consensus        65 Vv---p~~~~~l~~~~~~~~~~-~~~~v~~~~~~gl~~~y~~P~~lG~DR~~~~vaA~~~~~-~~~iVVD~GTAt-T~d~  138 (268)
T 2h3g_X           65 VV---PPIMFALERMCEKYFKI-KPLVVGPGIKTGLNIKYENPREVGADRIVNAVAGIHLYG-SPLIIVDFGTAT-TYCY  138 (268)
T ss_dssp             SC---HHHHHHHHHHHHHHTCC-CCEECSTTCCCCCEECSSCGGGSCHHHHHHHHHHHHHHC-SSEEEEEESSEE-EEEE
T ss_pred             cC---hhHHHHHHHHHHHHhCC-CeEEEcCCCCCCccccCCChhhcCHHHHHHHHHHHHhcC-CCEEEEECCCce-EEEE
Confidence            63   44456677778887752 23332            22      2223344432  34 589999999987 4444


Q ss_pred             e-cCCcE
Q 020972          163 T-EDGRD  168 (319)
Q Consensus       163 i-~dG~~  168 (319)
                      + .+|+.
T Consensus       139 v~~~g~~  145 (268)
T 2h3g_X          139 INEEKHY  145 (268)
T ss_dssp             ECTTSEE
T ss_pred             ECCCCcE
Confidence            4 45544

>4bc3_A Xylulose kinase; transferase, glucuronate xylulokinase pathway; HET: MSE EDO; 1.68A {Homo sapiens} PDB: 4bc2_A* 4bc4_A* 4bc5_A*

Probab=97.59  E-value=9.2e-05  Score=72.99  Aligned_cols=75  Identities=16%  Similarity=0.112  Sum_probs=51.4

Q ss_pred             cCCCcEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCC----------Cc-------cccCHHH-HHHHHHH
Q 020972           18 SGGREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCS----------NH-------NSVGEDA-ARETIEK   79 (319)
Q Consensus        18 ~~m~~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~----------~~-------~~~~~~~-~~~~i~~   79 (319)
                      .+| .|+||||+|.|++|++++|.         +|+++.+.+.+..          ..       .++++++ +.+.+..
T Consensus         7 ~~~-~~~lgID~GTts~Ka~l~d~---------~G~vv~~~~~~~~~~~p~~~~~~g~~e~~~g~~eqdp~~~w~~~~~~   76 (538)
T 4bc3_A            7 APR-RCCLGWDFSTQQVKVVAVDA---------ELNVFYEESVHFDRDLPEFGTQGGVHVHKDGLTVTSPVLMWVQALDI   76 (538)
T ss_dssp             --C-CEEEEEEECSSEEEEEEEET---------TCCEEEEEEEEHHHHSGGGCCBTTBEECTTSSCEEEEHHHHHHHHHH
T ss_pred             CCC-CEEEEEEEcCcCEEEEEECC---------CCCEEEEEEEecCCcCCcccCCCCeeecCCCccccCcHHHHHHHHHH
Confidence            554 59999999999999999999         9999988765311          01       0123444 4444444


Q ss_pred             HHHHHHHHcCCCccccceEEEeec
Q 020972           80 VMADALLKSGSNRSAVRAVCLAVS  103 (319)
Q Consensus        80 ~i~~~l~~~~~~~~~i~~Igig~p  103 (319)
                      + .+.+.+.++++.+|.+||+..-
T Consensus        77 ~-~~~l~~~~~~~~~I~aIgis~q   99 (538)
T 4bc3_A           77 I-LEKMKASGFDFSQVLALSGAGQ   99 (538)
T ss_dssp             H-HHHHHHTTCCGGGEEEEEEEEC
T ss_pred             H-HHHHHHcCCChHHeEEEEeccc
Confidence            4 4456677777788999888754

>2ivn_A O-sialoglycoprotein endopeptidase; UP1 keops complex, Fe/Zn dependent nucleotide phosphatase, metalloprotease, hypothetical protein, zinc; HET: ANP; 1.65A {Pyrococcus abyssi} PDB: 2ivo_A 2ivp_A*

Probab=97.17  E-value=0.14  Score=46.87  Aligned_cols=120  Identities=14%  Similarity=0.167  Sum_probs=74.1

Q ss_pred             EEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCC-ccccCHH----HHHHHHHHHHHHHHHHcCCCccccce
Q 020972           23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSN-HNSVGED----AARETIEKVMADALLKSGSNRSAVRA   97 (319)
Q Consensus        23 ~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~-~~~~~~~----~~~~~i~~~i~~~l~~~~~~~~~i~~   97 (319)
                      ++||||.+.+.+.+++++.          ++++......-.. .....|+    .-.+.+..++++++++++++.++|..
T Consensus         2 ~iLgIdts~~~~~val~~~----------g~i~~~~~~~~~~~~gg~~p~~~~~~h~~~l~~~i~~~L~~agi~~~did~   71 (330)
T 2ivn_A            2 LALGIEGTAHTLGIGIVSE----------DKVLANVFDTLTTEKGGIHPKEAAEHHARLMKPLLRKALSEAGVSLDDIDV   71 (330)
T ss_dssp             CEEEEECSSSEEEEEEECS----------SCEEEEEEEECCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHTCCTTTCCE
T ss_pred             EEEEEEccCCCeEEEEEEC----------CEEEEEEEEEeecccCCcCchhhHHHHHHHHHHHHHHHHHHcCCCHHHCcE
Confidence            5999999999999999974          6777654321100 0001233    23556778899999999998889999


Q ss_pred             EEEe-ecCCCCc-hhHHHHHHHHHhhCCCCceEEEeCcHHHHHHhhcC-C-CCCeEEEEEC
Q 020972           98 VCLA-VSGVNHP-TDQQRILNWLRDIFPGNVRLYVHNDALAALASGTM-G-KLHGCVLIAG  154 (319)
Q Consensus        98 Igig-~pG~~~~-~~~~~l~~~L~~~~~~~~pv~v~NDa~aa~~g~~~-g-~~~~v~v~~G  154 (319)
                      |.++ =||.... .-...+.+.|...++  .|+.-.|--.+-++++.. + ....+++..|
T Consensus        72 Ia~~~GPG~~~~lrvg~~~ak~la~~~~--~pl~~v~h~~aHa~~a~~~~~~~~~~l~v~G  130 (330)
T 2ivn_A           72 IAFSQGPGLGPALRVVATAARALAVKYR--KPIVGVNHCIAHVEITKMFGVKDPVGLYVSG  130 (330)
T ss_dssp             EEEEEESSCHHHHHHHHHHHHHHHHHTT--CCEEEEEHHHHHHHGGGGGTCCSCEEEEECS
T ss_pred             EEEECCCCchHHHHHHHHHHHHHHHHcC--CCEEeeCcHHHHHHHHhhcCCCCCeEEEEcC
Confidence            8764 3443210 113345566666676  788877766654544432 2 1234455555

>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*

Probab=96.30  E-value=0.91  Score=44.25  Aligned_cols=102  Identities=17%  Similarity=0.172  Sum_probs=66.1

Q ss_pred             cEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCc----c-ccCHHHHHHHHHHHHHHHHHHcCCCccccc
Q 020972           22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNH----N-SVGEDAARETIEKVMADALLKSGSNRSAVR   96 (319)
Q Consensus        22 ~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~----~-~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~   96 (319)
                      .++||||-....+.++|++.         +++++..........    . +.....-.+.+..++++++++  +...++.
T Consensus         6 m~iL~i~ts~~~~~~al~~~---------~~~~~~~~~~~~~~~~gg~~p~~a~~~h~~~l~~~i~~~l~~--~~~~~id   74 (540)
T 3en9_A            6 MICLGLEGTAEKTGVGIVTS---------DGEVLFNKTIMYKPPKQGINPREAADHHAETFPKLIKEAFEV--VDKNEID   74 (540)
T ss_dssp             CEEEEEECSSSEEEEEEEET---------TSCEEEEEEEECCCCCSSSSCCCHHHHHHHHHHHHHHHHHHH--SCGGGCC
T ss_pred             ceEEEEEcCccceEEEEEEC---------CCeEEEEEEEeecCCCCCCChHHHHHHHHHHHHHHHHHHHHh--CCHhHCc
Confidence            37999999888999999997         668887654321100    0 011134456788888888887  6777899


Q ss_pred             eEEEee-cCCCCc-hhHHHHHHHHHhhCCCCceEEEeCcHHH
Q 020972           97 AVCLAV-SGVNHP-TDQQRILNWLRDIFPGNVRLYVHNDALA  136 (319)
Q Consensus        97 ~Igig~-pG~~~~-~~~~~l~~~L~~~~~~~~pv~v~NDa~a  136 (319)
                      +|+++. ||.... .-+......|...++  +|++-.|--.+
T Consensus        75 ~ia~~~gPG~~~~l~vg~~~ak~la~~~~--~p~~~v~h~~a  114 (540)
T 3en9_A           75 LIAFSQGPGLGPSLRVTATVARTLSLTLK--KPIIGVNHCIA  114 (540)
T ss_dssp             EEEEEEESSCHHHHHHHHHHHHHHHHHHT--CCEEEEEHHHH
T ss_pred             EEEEecCCCchhhHHHHHHHHHHHHHHhC--CCeeEeccHHH
Confidence            988764 554211 113445566666666  88877776554

>3eno_A Putative O-sialoglycoprotein endopeptidase; hydrolase, metal-binding, metalloprotease, protease, zinc, keops complex, ATPase, metal ION binding; 3.02A {Thermoplasma acidophilum}

Probab=95.92  E-value=0.99  Score=41.29  Aligned_cols=134  Identities=16%  Similarity=0.191  Sum_probs=77.9

Q ss_pred             EEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCC-CccccCHH----HHHHHHHHHHHHHHHHcCCCccccce
Q 020972           23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCS-NHNSVGED----AARETIEKVMADALLKSGSNRSAVRA   97 (319)
Q Consensus        23 ~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~-~~~~~~~~----~~~~~i~~~i~~~l~~~~~~~~~i~~   97 (319)
                      ++||||--...+.++|++.          ++++........ ...-.-|+    .-.+.+..+|+++++++++..++|.+
T Consensus         7 ~iLgIdts~~~~svAl~~~----------~~i~~~~~~~~~~~~gGv~p~~a~~~H~~~l~~~i~~~L~~ag~~~~did~   76 (334)
T 3eno_A            7 IVLGLEGTAHTISCGIIDE----------SRILAMESSMYRPKTGGIRPLDAAVHHSEVIDTVISRALEKAKISIHDIDL   76 (334)
T ss_dssp             EEEEEECSSSEEEEEEEES----------SCCCEEEEEECCCSSCSCCHHHHHHHHHHHHHHHHHHHHHHHTCCGGGCCE
T ss_pred             eEEEEECCCcCeEEEEEEC----------CEEEEEEEEeeccccCCcCcchHHHHHHHHHHHHHHHHHHHcCCCHHHCCE
Confidence            7999998888899999985          567765432110 01001122    23457888999999999999999999


Q ss_pred             EEEeecCCCCch---hHHHHHHHHHhhCCCCceEEEeCcHHHHHHhhc--CC-CCCeEEEEECccceeEeEecCCcEEe
Q 020972           98 VCLAVSGVNHPT---DQQRILNWLRDIFPGNVRLYVHNDALAALASGT--MG-KLHGCVLIAGTGTIAYGFTEDGRDAR  170 (319)
Q Consensus        98 Igig~pG~~~~~---~~~~l~~~L~~~~~~~~pv~v~NDa~aa~~g~~--~g-~~~~v~v~~GTGigg~gii~dG~~~r  170 (319)
                      |+++. ||....   -+..+.+.|...++  .|++-.|--.+-+++..  .+ ....+++..|.+.--. .+.+++...
T Consensus        77 Iav~~-gPG~~t~lrvg~~~ak~La~~~~--~Pl~~v~hl~aHa~sa~~~s~~~~pl~L~vsGg~t~l~-~~~~~~~~~  151 (334)
T 3eno_A           77 IGFSM-GPGLAPSLRVTATAARTISVLTG--KPIIGVNHPLGHIEIGRRVTGAIDPVMLYVSGGNTQVI-AHVNGRYRV  151 (334)
T ss_dssp             EEEEC-SSSCHHHHHHHHHHHHHHHHHHT--CCCEEECHHHHHHHHHHHHHTCSSCEEEEESSSCEEEE-EECSSBEEE
T ss_pred             EEEEc-CCCCcchHHHHHHHHHHHhhccC--CCeEEeccHHHHHHHHHhcCCCCCCEEEEEECCCcEEE-EEeCCEEEE
Confidence            98874 333322   13344555666666  78776665443222221  11 2235556666664222 234454433

>3sk3_A Acetate kinase, acetokinase; actin-like ATPase domain, askha superfamily of phosphotransf acetokinase, ATP binding, phosphotransferase; HET: CIT; 1.90A {Salmonella enterica subsp} PDB: 3slc_A

Probab=95.83  E-value=0.12  Score=48.71  Aligned_cols=142  Identities=13%  Similarity=0.036  Sum_probs=77.9

Q ss_pred             CCeEEEEECccceeEeEecCCcEEeeCCCCCccCCcCChHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHcCCCChhhHH
Q 020972          146 LHGCVLIAGTGTIAYGFTEDGRDARAAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELI  225 (319)
Q Consensus       146 ~~~v~v~~GTGigg~gii~dG~~~raGg~Ghl~gd~Gsa~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~~~~~l~  225 (319)
                      -+.|++-+|.|+.-+ -+.||+.+-. -.|+. ..+|-  -.|         ...|..++..+ -.+.+..+. +.+++.
T Consensus       219 ~~lIv~HLGnGaSi~-Ai~~GksvDT-sMG~T-pleGl--~mg---------tRsGdiDp~~l-~~l~~~~g~-s~~ei~  282 (415)
T 3sk3_A          219 LNIITCHLGNGGSVS-AIRNGKCVDT-SMGLT-PLEGL--VMG---------TRSGDIDPAII-FHLHDTLGM-SVDQIN  282 (415)
T ss_dssp             CCEEEEECSSSCEEE-EEETTEEEEE-CCCCC-CSCC------------------CCCCHHHH-HHHHHHHTC-CHHHHH
T ss_pred             CcEEEEEeCCCceEE-EEECCEEEEe-CCCcC-CCCCc--cCC---------CCCCCCChHHH-HHHHHhcCC-CHHHHH
Confidence            378999999999665 4589997641 11111 11121  000         11222222222 222333332 445555


Q ss_pred             HHhccCCC---hHHHhchhHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhcccccccEEEEcch
Q 020972          226 GWTYVDPS---WARIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEGVTYTKILKEKVPLLMENIL  302 (319)
Q Consensus       226 ~~~~~~~~---~~~~a~~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~la~li~~l~~~~~~~~~~~~~~~~~~ivl~Gg~  302 (319)
                      ..++.+..   -..+....+.|.+ +.+||+.|+..++-++..+++.|..+...|+-  .          -.-||+-||+
T Consensus       283 ~~Lnk~SGLlglsG~S~D~R~le~-~~~gd~~A~lA~d~f~yri~k~IGa~aa~L~G--~----------vDaIVFTgGI  349 (415)
T 3sk3_A          283 KMLTKESGLLGLTEVTSDCRYVED-NYATKEDAKRAMDVYCHRLAKYIGSYTALMDG--R----------LDAVVFTGGI  349 (415)
T ss_dssp             HHC------CCSTTTTCGGGCSSC-CCCCHHHHHHHHHHHHHHHHHHHHHGGGGSTT--C----------CCEEEEEHHH
T ss_pred             HHHhcCcCcccccCCcchHHHHHH-HHcCCHhHHHHHHHHHHHHHHHHHHHHHHhCC--C----------CCEEEECCcc
Confidence            44443210   0111112344433 34699999999999999999999999887752  1          1379999999


Q ss_pred             hhhcHHHHHHHHhhc
Q 020972          303 FLLSWLVVFLKLIEG  317 (319)
Q Consensus       303 ~~~~~~~~~~~~~~~  317 (319)
                      - .+...+...++++
T Consensus       350 G-Ens~~vR~~v~~~  363 (415)
T 3sk3_A          350 G-ENAAMVRELSLGK  363 (415)
T ss_dssp             H-TTCHHHHHHHHHT
T ss_pred             c-cCCHHHHHHHHhh
Confidence            9 4555666666654

>2f9w_A Pantothenate kinase; COAA, transferase; HET: PAU; 1.90A {Pseudomonas aeruginosa} SCOP: c.55.1.13 c.55.1.13 PDB: 2f9t_A*

Probab=95.66  E-value=0.25  Score=44.04  Aligned_cols=121  Identities=23%  Similarity=0.249  Sum_probs=69.4

Q ss_pred             CCCcEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceE
Q 020972           19 GGREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAV   98 (319)
Q Consensus        19 ~m~~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~I   98 (319)
                      +|..+.|.||+|-|++++++++.         +++++...+..+       .++....+.        .  .+..++.++
T Consensus        20 ~~~~M~L~IDiGNT~ik~g~~~~---------~~~~~~~~r~~t-------~de~~~~l~--------~--~~~~~i~~v   73 (271)
T 2f9w_A           20 HMASMILELDCGNSLIKWRVIEG---------AARSVAGGLAES-------DDALVEQLT--------S--QQALPVRAC   73 (271)
T ss_dssp             ---CEEEEEEECSSCEEEEEEET---------TTEEEEEEEESS-------HHHHHHHHH--------H--TTTSCEEEE
T ss_pred             cccCcEEEEEeCCCeeEEEEEeC---------CCEEEEEEEecC-------HHHHHHHHh--------c--CcccCCCEE
Confidence            35568999999999999999995         467777766532       122222111        1  233467776


Q ss_pred             EEeecCCCCchhHHHHHHHHHhhCCCCceEEE---------eC----------cHHHHHHhhcC-CCCCeEEEEECccce
Q 020972           99 CLAVSGVNHPTDQQRILNWLRDIFPGNVRLYV---------HN----------DALAALASGTM-GKLHGCVLIAGTGTI  158 (319)
Q Consensus        99 gig~pG~~~~~~~~~l~~~L~~~~~~~~pv~v---------~N----------Da~aa~~g~~~-g~~~~v~v~~GTGig  158 (319)
                      .++.-.  .+.-...+++.+++.|+. .|.++         .|          |--++++|+.. -..+.++|-+||=+ 
T Consensus        74 iisSV~--vp~~~~~l~~~~~~~~~~-~p~~v~~~~~~~gl~~~Y~~P~~lGaDR~~~avaA~~~y~~~~iVVD~GTAt-  149 (271)
T 2f9w_A           74 RLVSVR--SEQETSQLVARLEQLFPV-SALVASSGKQLAGVRNGYLDYQRLGLDRWLALVAAHHLAKKACLVIDLGTAV-  149 (271)
T ss_dssp             EEEECS--CHHHHHHHHHHHHHHSSC-CCEECCCCSEETTEECCSSSGGGSCHHHHHHHHHHHHHHSSCEEEEEESSEE-
T ss_pred             EEEECC--chHHHHHHHHHHHHHcCC-CeEEEeCCCccCCceecCCChhhccHHHHHHHHHHHHhcCCCEEEEEcCCce-
Confidence            665432  344556778888887752 33433         12          22223444321 13589999999987 


Q ss_pred             eEeEe-cCCcEE
Q 020972          159 AYGFT-EDGRDA  169 (319)
Q Consensus       159 g~gii-~dG~~~  169 (319)
                      .+=++ .+|+..
T Consensus       150 T~D~V~~~G~~l  161 (271)
T 2f9w_A          150 TSDLVAADGVHL  161 (271)
T ss_dssp             EEEEECTTSBEE
T ss_pred             EEEEECCCCeEE
Confidence            54444 356543

>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A

Probab=95.54  E-value=0.052  Score=43.43  Aligned_cols=91  Identities=15%  Similarity=0.225  Sum_probs=56.9

Q ss_pred             CCcEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEE-ecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceE
Q 020972           20 GREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARA-AAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAV   98 (319)
Q Consensus        20 m~~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~-~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~I   98 (319)
                      |+..+||+|.|..+|=+++.|.         .+.+..-. ..+..+     .+..++.|.+.+++.         ++..|
T Consensus         1 ~~~~iLglD~G~kriGvAvsd~---------~~~~A~pl~ti~~~~-----~~~~~~~l~~li~e~---------~v~~i   57 (138)
T 1nu0_A            1 MSGTLMAFDFGTKSIGVAVGQR---------ITGTARPLPAIKAQD-----GTPDWNIIERLLKEW---------QPDEI   57 (138)
T ss_dssp             CCCEEEEEECCSSEEEEEEEET---------TTTEEEEEEEEEEET-----TEECHHHHHHHHHHH---------CCSEE
T ss_pred             CCCeEEEEEeCCCEEEEEEEcC---------CCCEEeeEEEEEcCC-----cchHHHHHHHHHHHc---------CCCEE
Confidence            5667999999999999999997         55443221 221111     112234455554432         56788


Q ss_pred             EEeec----CCCCchh--HHHHHHHHHhhCCCCceEEEeCcHH
Q 020972           99 CLAVS----GVNHPTD--QQRILNWLRDIFPGNVRLYVHNDAL  135 (319)
Q Consensus        99 gig~p----G~~~~~~--~~~l~~~L~~~~~~~~pv~v~NDa~  135 (319)
                      -||+|    |-..+..  -..+.+.|+++|+  +||..-+.-.
T Consensus        58 VvGlP~~mdGt~~~~~~~~~~f~~~L~~~~~--lpV~~~DERl   98 (138)
T 1nu0_A           58 IVGLPLNMDGTEQPLTARARKFANRIHGRFG--VEVKLHDERL   98 (138)
T ss_dssp             EEEEEECTTSCBCHHHHHHHHHHHHHHHHHC--CCEEEEEEEC
T ss_pred             EEecccCCCcCcCHHHHHHHHHHHHHHHHhC--CCEEEEcCCc
Confidence            89998    4333222  2578888888887  8888766543

>2ews_A Pantothenate kinase; PANK, structural genomics, structural genomics consortium, S transferase; HET: ANP; 2.05A {Staphylococcus aureus subsp} SCOP: c.55.1.14

Probab=95.29  E-value=1.5  Score=39.20  Aligned_cols=106  Identities=17%  Similarity=0.093  Sum_probs=60.2

Q ss_pred             cEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceEEEe
Q 020972           22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLA  101 (319)
Q Consensus        22 ~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Igig  101 (319)
                      .+.+|||+|+|.+|+++++          +++++.... +.     ...+++++.        ++.     .++..  +.
T Consensus        20 ~~~iGIDiGsTt~K~V~~~----------~~~i~~~~~-~~-----~~~~~~l~~--------l~~-----~~~~~--i~   68 (287)
T 2ews_A           20 HMKVGIDAGGTLIKIVQEQ----------DNQRTFKTE-LT-----KNIDQVVEW--------LNQ-----QQIEK--LC   68 (287)
T ss_dssp             -CEEEEEECSSEEEEEEEC----------SSCEEEEEE-EG-----GGHHHHHHH--------HHT-----SCCSE--EE
T ss_pred             CeEEEEEEChhhEEEEEEc----------CCEEEEEEe-ch-----HHHHHHHHH--------hcc-----cCceE--EE
Confidence            4799999999999999985          577776532 21     122222221        121     23433  34


Q ss_pred             ecCCCCchhHHHHHHHHHhhCCCCceEEEeCcHHHHHHhhc--CCC-----CCeEEEEECccceeEeEecC-CcEEe
Q 020972          102 VSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGT--MGK-----LHGCVLIAGTGTIAYGFTED-GRDAR  170 (319)
Q Consensus       102 ~pG~~~~~~~~~l~~~L~~~~~~~~pv~v~NDa~aa~~g~~--~g~-----~~~v~v~~GTGigg~gii~d-G~~~r  170 (319)
                      +.|....        .+.+.++  .|....+...|-..|..  ...     .+.+++-+|+|.. . +..+ +...|
T Consensus        69 ~TG~G~~--------~~~~~l~--~~~~~v~Ei~~~~~Ga~~l~~~~~~~~~~~~vIdIGg~ds-i-i~v~~~~f~r  133 (287)
T 2ews_A           69 LTGGNAG--------VIAENIN--IPAQIFVEFDAASQGLGILLKEQGHDLADYIFANVGTGTS-L-HYFDGQSQRR  133 (287)
T ss_dssp             EESTTHH--------HHHTTSS--SCCEECCHHHHHHHHHHHHHHHTTCCCSCEEEEEESSSEE-E-EEECSSCEEE
T ss_pred             EEChhHH--------hHhHhhC--CCcceeehhHHHHHHHHHhcccCCCCcCCeEEEEeCCCeE-E-EEEcCCceEE
Confidence            4665421        1233455  67777777766555432  111     3578999999985 4 4344 44555

>3zyy_X Iron-sulfur cluster binding protein; iron-sulfur-binding protein, ashka family, ATPase; 2.20A {Carboxydothermus hydrogenoformans}

Probab=94.90  E-value=0.058  Score=53.73  Aligned_cols=83  Identities=20%  Similarity=0.252  Sum_probs=56.7

Q ss_pred             CcccccccccccCCCcEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCcc-c----------------cC
Q 020972            7 GEIWDFETAEESGGREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHN-S----------------VG   69 (319)
Q Consensus         7 ~~~~~~~~~~~~~m~~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~-~----------------~~   69 (319)
                      .++++.++.-+.. ..|-++||+|.|.+.+.|+|+.        +|+++.+....  |++ .                .+
T Consensus       192 ~~ii~ve~g~~~~-~~~GlAvDiGTTtv~~~LvdL~--------tG~~l~~~~~~--NpQ~~~G~DVisRI~~a~~~~~g  260 (631)
T 3zyy_X          192 NKALYIKSGSASQ-RVFGLAIDIGTTTVVVQLVDLV--------SGKVLGTKGNY--NKQAAFGDDVISRIIYVDENPDG  260 (631)
T ss_dssp             EEEEEEEESSCCC-CCEEEEEEECSSEEEEEEEETT--------TCCEEEEEEEE--CGGGGTCSSHHHHHHHHHHCTTH
T ss_pred             ceEEEEecCCCCC-CceEEEEEecccceeEEEEECC--------CCCEEEeeccc--CCCCCcchHHHHHHHHHhcCccc
Confidence            3455555443333 4589999999999999999984        89999987642  332 0                11


Q ss_pred             HH----HHHHHHHHHHHHHHHHcCCCccccceEEE
Q 020972           70 ED----AARETIEKVMADALLKSGSNRSAVRAVCL  100 (319)
Q Consensus        70 ~~----~~~~~i~~~i~~~l~~~~~~~~~i~~Igi  100 (319)
                      .+    .+++.|.++++++++++++++++|..+.+
T Consensus       261 ~~~L~~~v~~~in~li~~l~~~~~i~~~~I~~~~v  295 (631)
T 3zyy_X          261 AEKLRKAVLSTINELIFQLCKEHGVEKKEIMAAVV  295 (631)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCHHHeeEEEE
Confidence            11    24455666777777778999888887655

>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8

Probab=94.55  E-value=0.079  Score=42.99  Aligned_cols=94  Identities=17%  Similarity=0.171  Sum_probs=57.9

Q ss_pred             EEEEEEcCccceeEEEEeCccCCCCCCCCCCeEE-EEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceEEEe
Q 020972           23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLA-RAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLA  101 (319)
Q Consensus        23 ~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~-~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Igig  101 (319)
                      .+||||.|-.+|-+++.|.         .|.+.. ...+.+.+   ...+..++.|.    +++++     .++..|.||
T Consensus         4 riLGiDpG~~riGvAv~d~---------~g~~a~p~~~I~~~~---~r~~~~~~~l~----~li~~-----~~~~~ivVG   62 (150)
T 1vhx_A            4 RILGLDLGTKTLGVALSDE---------MGWTAQGIETIKINE---AEGDYGLSRLS----ELIKD-----YTIDKIVLG   62 (150)
T ss_dssp             EEEEEEECSSEEEEEEECT---------TSSSEEEEEEEECBG---GGTBCCHHHHH----HHHTT-----SEEEEEEEE
T ss_pred             EEEEEEccCCEEEEEEEEC---------CCCEEeeEEEEEcCC---cchHHHHHHHH----HHHHH-----cCCCEEEEe
Confidence            5999999999999999998         777654 23332211   00122233333    44443     267788899


Q ss_pred             ecCCC-Cch----h--HHHHHHHHHhhCCCCceEEEeCcHHHHHHh
Q 020972          102 VSGVN-HPT----D--QQRILNWLRDIFPGNVRLYVHNDALAALAS  140 (319)
Q Consensus       102 ~pG~~-~~~----~--~~~l~~~L~~~~~~~~pv~v~NDa~aa~~g  140 (319)
                      .| .. +.+    .  -..+...|.+.++  +||.+-+...+...+
T Consensus        63 lP-~~~nGt~~~~~~~ar~f~~~L~~~~~--lpV~~vDEr~Ts~~A  105 (150)
T 1vhx_A           63 FP-KNMNGTVGPRGEASQTFAKVLETTYN--VPVVLWDERLTTMAA  105 (150)
T ss_dssp             CC-CCBTTBCCHHHHHHHHHHHHHHHHHC--SCEEEECCSSCHHHH
T ss_pred             ee-ecCCcchhHHHHHHHHHHHHHHHhhC--CCEEEecCCCCHHHH
Confidence            98 32 111    1  1356667777776  899998777655443

>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8

Probab=94.52  E-value=0.76  Score=34.26  Aligned_cols=81  Identities=10%  Similarity=0.065  Sum_probs=52.8

Q ss_pred             EEEEEcCccceeEEEEeCccCCCCCCCCCCe---EEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceEEE
Q 020972           24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPV---LARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCL  100 (319)
Q Consensus        24 ~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~i---l~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Igi  100 (319)
                      +||+|.|..+|=+++.|.         .+.+   +.....       .+.+..++.|.+.+++.         ++..+-|
T Consensus         3 iLglD~G~kriGvAvsd~---------~~~~A~pl~ti~~-------~~~~~~~~~l~~li~e~---------~v~~iVv   57 (98)
T 1iv0_A            3 VGALDVGEARIGLAVGEE---------GVPLASGRGYLVR-------KTLEEDVEALLDFVRRE---------GLGKLVV   57 (98)
T ss_dssp             EEEEEESSSEEEEEEECS---------CCSSCCCEEEEEC-------CCHHHHHHHHHHHHHHH---------TCCEEEE
T ss_pred             EEEEEeCCCEEEEEEEeC---------CCCeeeeeEEEEc-------cCcHHHHHHHHHHHHHc---------CCCEEEE
Confidence            899999999999999997         5543   222211       13445556666655542         5678889


Q ss_pred             eec----CCCCch--hHHHHHHHHHhhCCCCceEEEeC
Q 020972          101 AVS----GVNHPT--DQQRILNWLRDIFPGNVRLYVHN  132 (319)
Q Consensus       101 g~p----G~~~~~--~~~~l~~~L~~~~~~~~pv~v~N  132 (319)
                      |+|    |-..+.  .-..+.+.|+++ +  .||.+-+
T Consensus        58 GlP~~mdGt~~~~~~~~~~f~~~L~~~-~--lpV~~~D   92 (98)
T 1iv0_A           58 GLPLRTDLKESAQAGKVLPLVEALRAR-G--VEVELWD   92 (98)
T ss_dssp             ECCCCCCSSSCCCSSTTHHHHHHHHHT-T--CEEEEEC
T ss_pred             eeccCCCCCcCHHHHHHHHHHHHHhcC-C--CCEEEEC
Confidence            988    332221  235788888887 6  8987654

>1g99_A Acetate kinase; alpha/beta, askha (acetate and sugar kinases, HSC70, actin) superfamily, conserved epsilon conformation; HET: ADP; 2.50A {Methanosarcina thermophila} SCOP: c.55.1.2 c.55.1.2 PDB: 1tuu_A* 1tuy_A*

Probab=94.47  E-value=0.71  Score=43.40  Aligned_cols=137  Identities=11%  Similarity=0.061  Sum_probs=83.9

Q ss_pred             CCeEEEEECccceeEeEecCCcEEe-eCCCCC----ccCCcCChHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHcCCCC
Q 020972          146 LHGCVLIAGTGTIAYGFTEDGRDAR-AAGAGP----ILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSS  220 (319)
Q Consensus       146 ~~~v~v~~GTGigg~gii~dG~~~r-aGg~Gh----l~gd~Gsa~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~~  220 (319)
                      .+.|++-+|.|+.-+ -+.||+.+- .-|+--    +.|.                  ..|..++..+. .+.+..+ -+
T Consensus       202 ~~lIv~HLGnGaSi~-Ai~~GksVDTsMG~TpleGl~MgT------------------RsGdiDp~~l~-~l~~~~~-~s  260 (408)
T 1g99_A          202 TKIITCHLGNGSSIT-AVEGGKSVETSMGFTPLEGLAMGT------------------RCGSIDPAIVP-FLMEKEG-LT  260 (408)
T ss_dssp             CEEEEEEESSSEEEE-EEETTEEEEESCCSSTTSSSCCSS------------------CCCSCCTTHHH-HHHHHHT-CC
T ss_pred             CCEEEEEeCCccchh-heECCEEEEeCCCCCCCCCCCCCC------------------CCCCCCHHHHH-HHHHhcC-CC
Confidence            378999999998655 558999764 222211    1111                  11222222222 2222223 24


Q ss_pred             hhhHHHHhccCCCh---HHHhchhHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhcccccccEE
Q 020972          221 PDELIGWTYVDPSW---ARIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEGVTYTKILKEKVPLL  297 (319)
Q Consensus       221 ~~~l~~~~~~~~~~---~~~a~~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~la~li~~l~~~~~~~~~~~~~~~~~~iv  297 (319)
                      .+++...++.+...   ..+....+.|.+++.+||+.|+..++-++..+++.|..+...++-             -.-||
T Consensus       261 ~~ei~~~Lnk~SGLlglsG~s~D~R~l~~~~~~Gd~~A~lA~d~f~yri~k~IGa~~a~Lgg-------------vDaiV  327 (408)
T 1g99_A          261 TREIDTLMNKKSGVLGVSGLSNDFRDLDEAASKGNRKAELALEIFAYKVKKFIGEYSAVLNG-------------ADAVV  327 (408)
T ss_dssp             HHHHHHHHHHSCHHHHHHSSCSCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHTTS-------------CSEEE
T ss_pred             HHHHHHHHhhcCCceEecCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHhhCC-------------CCEEE
Confidence            44554444432211   011223677888888999999999999999999999999988852             24799


Q ss_pred             EEcchhhhcHHHHHHHHhhc
Q 020972          298 MENILFLLSWLVVFLKLIEG  317 (319)
Q Consensus       298 l~Gg~~~~~~~~~~~~~~~~  317 (319)
                      +-||+-. ....+...++++
T Consensus       328 FTgGIGE-ns~~vR~~i~~~  346 (408)
T 1g99_A          328 FTAGIGE-NSASIRKRILTG  346 (408)
T ss_dssp             EEHHHHH-HCHHHHHHHHTT
T ss_pred             ECccccc-cCHHHHHHHHhh
Confidence            9999994 444666666654

>4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A*

Probab=94.47  E-value=0.13  Score=48.77  Aligned_cols=75  Identities=12%  Similarity=0.115  Sum_probs=53.4

Q ss_pred             CcEEEEEEcCccceeEEEEeCccCCCCCCCCC-CeEEEEecCCCCcc---ccCHHHHHHHHHHHHHHHHHHcCCCccccc
Q 020972           21 REVILGLDGGTTSTVCICMPVISMSDSLPDPL-PVLARAAAGCSNHN---SVGEDAARETIEKVMADALLKSGSNRSAVR   96 (319)
Q Consensus        21 ~~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G-~il~~~~~~~~~~~---~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~   96 (319)
                      ..+++|+|||.|++++++.....       ++ +++.....++....   =.+.+.+.+.|.++++++-+.++.   ++.
T Consensus         7 ~~~ivglDIGts~I~~vv~~~~~-------~~~~i~g~~~~~s~gv~~G~I~di~~~~~~I~~av~~ae~~~g~---~i~   76 (419)
T 4a2a_A            7 TVFYTSIDIGSRYIKGLVLGKRD-------QEWEALAFSSVKSRGLDEGEIKDAIAFKESVNTLLKELEEQLQK---SLR   76 (419)
T ss_dssp             CCEEEEEEECSSEEEEEEEEC-----------CEEEEEEEEECCSEETTEESBHHHHHHHHHHHHHHHHHHHTS---CCC
T ss_pred             CCEEEEEEccCCEEEEEEEEEcC-------CCCEEEEEEEeccCCeeCCEEEcHHHHHHHHHHHHHHHHHHcCC---CcC
Confidence            45899999999999999987511       23 67776665432110   136788888888888888777765   566


Q ss_pred             e-EEEeecCC
Q 020972           97 A-VCLAVSGV  105 (319)
Q Consensus        97 ~-Igig~pG~  105 (319)
                      . +.+++||.
T Consensus        77 ~~v~v~i~g~   86 (419)
T 4a2a_A           77 SDFVISFSSV   86 (419)
T ss_dssp             SEEEEEECCT
T ss_pred             ceEEEEEcCC
Confidence            7 88899997

>2iir_A Acetate kinase; transferase; 3.30A {Thermotoga maritima}

Probab=94.34  E-value=0.82  Score=42.90  Aligned_cols=137  Identities=14%  Similarity=0.061  Sum_probs=83.6

Q ss_pred             CCeEEEEECccceeEeEecCCcEEe-eCCCCC----ccCCcCChHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHcCCCC
Q 020972          146 LHGCVLIAGTGTIAYGFTEDGRDAR-AAGAGP----ILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSS  220 (319)
Q Consensus       146 ~~~v~v~~GTGigg~gii~dG~~~r-aGg~Gh----l~gd~Gsa~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~~  220 (319)
                      .+.|++-+|.|+.-+ -+.||+.+- .-|+--    +.|.                  ..|..++..+. .+.+..+ -+
T Consensus       201 ~~lIv~HLGnGaSi~-Ai~~GksVDTsMG~TpLeGl~MgT------------------RsGdiDp~~v~-~l~~~~~-~s  259 (403)
T 2iir_A          201 LKIITCHIGNGASVA-AVKYGKCVDTSMGFTPLEGLVMGT------------------RSGDLDPAIPF-FIMEKEG-IS  259 (403)
T ss_dssp             CEEEEEEESSSEEEE-EEETTEEEEESCCSSTTSSSCCSS------------------CCCSCCTTHHH-HHHHHHT-CC
T ss_pred             CCEEEEEeCCCeeee-eeECCEEEEeCCCCCCCCCCCCCC------------------CCCCCChHHHH-HHHHhcC-CC
Confidence            378999999998655 558999764 222211    1111                  11222222222 2222223 24


Q ss_pred             hhhHHHHhccCCChH----HHhchhHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhcccccccE
Q 020972          221 PDELIGWTYVDPSWA----RIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEGVTYTKILKEKVPL  296 (319)
Q Consensus       221 ~~~l~~~~~~~~~~~----~~a~~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~la~li~~l~~~~~~~~~~~~~~~~~~i  296 (319)
                      .+++...++.+....    .+....+.|.+++.+||+.|+..++-++..+++.|..+...++-             -.-|
T Consensus       260 ~~ei~~~Lnk~SGLlgls~G~s~D~R~l~~~~~~Gd~~A~lA~d~f~yri~k~IGa~~a~Lgg-------------vDaI  326 (403)
T 2iir_A          260 PQEMYDILNKKSGVYGLSKGFSSDMRDIEEAALKGDEWCKLVLEIYDYRIAKYIGAYAAAMNG-------------VDAI  326 (403)
T ss_dssp             HHHHHHHHHHSCHHHHHTTTSCSCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHTC-------------CSEE
T ss_pred             HHHHHHHHhhcCCeeEecCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhCC-------------CCEE
Confidence            444544444322110    11223678888888999999999999999999999999988863             1379


Q ss_pred             EEEcchhhhcHHHHHHHHhhc
Q 020972          297 LMENILFLLSWLVVFLKLIEG  317 (319)
Q Consensus       297 vl~Gg~~~~~~~~~~~~~~~~  317 (319)
                      |+-||+-. ....+...++++
T Consensus       327 VFTgGIGE-ns~~vR~~i~~~  346 (403)
T 2iir_A          327 VFTAGVGE-NSPITREDVCSY  346 (403)
T ss_dssp             EEEHHHHT-TCHHHHHHHHHT
T ss_pred             EECccccc-CCHHHHHHHHhh
Confidence            99999994 445666666653

>2e1z_A Propionate kinase; TDCD, native, acetate kinase, nucleotide, AP4A, ADP, ATP, AMPPNP, transferase; HET: B4P; 1.98A {Salmonella typhimurium} SCOP: c.55.1.2 c.55.1.2 PDB: 1x3n_A* 2e1y_A 1x3m_A* 2e20_A*

Probab=94.28  E-value=0.62  Score=43.90  Aligned_cols=64  Identities=14%  Similarity=0.073  Sum_probs=51.9

Q ss_pred             hhHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhcccccccEEEEcchhhhcHHHHHHHHhhc
Q 020972          240 LVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEGVTYTKILKEKVPLLMENILFLLSWLVVFLKLIEG  317 (319)
Q Consensus       240 ~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~la~li~~l~~~~~~~~~~~~~~~~~~ivl~Gg~~~~~~~~~~~~~~~~  317 (319)
                      ..+.|.+++.+||+.|+..++-++..+++.|..+...|+-             -.-||+-||+-. ....+...++++
T Consensus       291 D~R~l~~~~~~Gd~~A~lA~d~f~yri~k~IGa~aa~Lgg-------------vDaIVFTgGIGE-ns~~vR~~i~~~  354 (415)
T 2e1z_A          291 DLRVLEKAWHEGHERARLAIKTFVHRIARHIAGHAASLHR-------------LDGIIFTGGIGE-NSVLIRQLVIEH  354 (415)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTTCSS-------------CCEEEEEHHHHH-HCHHHHHHHHHT
T ss_pred             CHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhCC-------------CCEEEECccccc-cCHHHHHHHHhh
Confidence            3677888888999999999999999999999999987742             247999999994 444666666654

>3khy_A Propionate kinase; csgid, IDP01739, ATP-binding, nucleotide-binding, transferase, structural genomics; 1.98A {Francisella tularensis subsp}

Probab=93.98  E-value=1  Score=41.94  Aligned_cols=62  Identities=15%  Similarity=0.044  Sum_probs=50.2

Q ss_pred             hHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhcccccccEEEEcchhhhcHHHHHHHHhh
Q 020972          241 VPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEGVTYTKILKEKVPLLMENILFLLSWLVVFLKLIE  316 (319)
Q Consensus       241 ~~~v~~~A~~GD~~A~~il~~a~~~Lg~~la~li~~l~~~~~~~~~~~~~~~~~~ivl~Gg~~~~~~~~~~~~~~~  316 (319)
                      .+.|.+++++||+.|+.+++-++..+++.|..+...|+-             ...||+-||+..++ ..+...+++
T Consensus       275 ~R~l~~~~~~gd~~A~lA~d~f~yri~k~IGa~aa~L~g-------------vDaIVFTgGIgEns-~~iR~~i~~  336 (384)
T 3khy_A          275 MREVSQLAAKGDSLAKLAIEIFSHRVAKFVASYMIYFNK-------------LDALVFTGGIGENA-ANIRKNIIS  336 (384)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHGGGCSS-------------CCEEEEEHHHHHHC-HHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhCC-------------CCEEEECCccccCc-HHHHHHHHh
Confidence            577888889999999999999999999999999887752             24799999999544 455555554

>4h0o_A Acetate kinase; askha (acetate and S kinase, HSC70, actin) superfamily, ribonuclease H-like fold transferase; 2.40A {Entamoeba histolytica}

Probab=93.89  E-value=0.83  Score=42.74  Aligned_cols=64  Identities=11%  Similarity=0.121  Sum_probs=50.5

Q ss_pred             hhHHHHHHHHcCC---HHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhcccccccEEEEcchhhhcHHHHHHHHhh
Q 020972          240 LVPVVVSCAEAGD---EVANKILQDSVEELALSVKAVVQRLSLSGEGVTYTKILKEKVPLLMENILFLLSWLVVFLKLIE  316 (319)
Q Consensus       240 ~~~~v~~~A~~GD---~~A~~il~~a~~~Lg~~la~li~~l~~~~~~~~~~~~~~~~~~ivl~Gg~~~~~~~~~~~~~~~  316 (319)
                      ..+.|.+++++||   +.|+.+++-++..+++.|..+...|+-.             .-||+-||+-.++. .+...++|
T Consensus       284 D~R~i~~~~~~gd~~~~~A~lA~d~f~yri~k~IGa~aa~L~Gv-------------DaIVFTgGIGEns~-~vR~~i~~  349 (404)
T 4h0o_A          284 DMRDILHEIETRGPKAKTCQLAFDVYIKQLAKTIGGLMVEIGGL-------------DLLVFTDQMGLEVW-QVRKAICD  349 (404)
T ss_dssp             CHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHTCC-------------SEEEEEHHHHHHCH-HHHHHHHH
T ss_pred             CHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------------CEEEECCccccCcH-HHHHHHHh
Confidence            3577888889999   9999999999999999999988877631             37999999974544 45566555


Q ss_pred             c
Q 020972          317 G  317 (319)
Q Consensus       317 ~  317 (319)
                      +
T Consensus       350 ~  350 (404)
T 4h0o_A          350 K  350 (404)
T ss_dssp             H
T ss_pred             h
Confidence            3

>3cet_A Conserved archaeal protein; Q6M145, MRR63, NESG, XRAY, structure, structural genomics, PSI-2, protein structure initiative; 1.80A {Methanococcus maripaludis S2} PDB: 3c0b_A

Probab=93.26  E-value=0.19  Score=46.09  Aligned_cols=81  Identities=19%  Similarity=0.140  Sum_probs=40.3

Q ss_pred             EEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceEEEee
Q 020972           23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV  102 (319)
Q Consensus        23 ~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Igig~  102 (319)
                      ++||+||||-++|+++.+.         +|++ ...+.+ .+.+ .+.+.    +.++++++..+       +....|-+
T Consensus         1 ~iiG~DIGGAn~K~a~~~~---------~g~~-~~~~~~-~PlW-~~~~~----L~~~l~~~~~~-------~~~~avtM   57 (334)
T 3cet_A            1 MILGIDIGGANTKITELHE---------NGEF-KVHHLY-FPMW-KNNDK----LAEVLKTYSND-------VSHVALVT   57 (334)
T ss_dssp             CEEEEEEC--CEEEEEECS---------TTCC-EEEEC----------------------------------CCEEEEEE
T ss_pred             CeeEEEecccceeeeeecC---------CCce-EEEEEe-cCCc-CCchH----HHHHHHHHHhh-------hccEEEEe
Confidence            4799999999999999887         8887 444432 2222 34333    44444444332       23456888


Q ss_pred             cCC-----CCchhH-HHHHHHHHhhCCCCceE
Q 020972          103 SGV-----NHPTDQ-QRILNWLRDIFPGNVRL  128 (319)
Q Consensus       103 pG~-----~~~~~~-~~l~~~L~~~~~~~~pv  128 (319)
                      .|=     .++.++ ..|.+.+++.|+  .||
T Consensus        58 TgELaD~f~~k~eGV~~I~~~v~~~~~--~~v   87 (334)
T 3cet_A           58 TAELADSYETKKEGVDNILNAAESAFG--SNI   87 (334)
T ss_dssp             CCC------CTTHHHHHHHHHHHHHHT--TCE
T ss_pred             chhhhhhhcCHHHHHHHHHHHHHHhcC--Cce
Confidence            883     223334 357777888886  575

>1t6c_A Exopolyphosphatase; alpha/beta protein, actin-like fold, hydrolase; 1.53A {Aquifex aeolicus} SCOP: c.55.1.8 c.55.1.8 PDB: 1t6d_A 2j4r_A*

Probab=92.73  E-value=1.4  Score=39.91  Aligned_cols=135  Identities=11%  Similarity=0.094  Sum_probs=83.5

Q ss_pred             cCCCcEEEEEEcCccceeEEEEeCccCCCCCCCCC--CeEEEEecCCCCcc-------ccCHHHHHHHHHHHHHHHH---
Q 020972           18 SGGREVILGLDGGTTSTVCICMPVISMSDSLPDPL--PVLARAAAGCSNHN-------SVGEDAARETIEKVMADAL---   85 (319)
Q Consensus        18 ~~m~~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G--~il~~~~~~~~~~~-------~~~~~~~~~~i~~~i~~~l---   85 (319)
                      .|+| .+.+||+|...++..+++..        ++  +++.+.+.+. ...       ..+ ++.+++..++++++.   
T Consensus         9 ~~~m-~~a~IDiGSns~rl~I~~~~--------~~~~~~i~~~k~~v-rLg~g~~~~g~ls-~eai~r~~~~L~~f~~~~   77 (315)
T 1t6c_A            9 KPIM-RVASIDIGSYSVRLTIAQIK--------DGKLSIILERGRIT-SLGTKVKETGRLQ-EDRIEETIQVLKEYKKLI   77 (315)
T ss_dssp             -CCE-EEEEEEECSSEEEEEEEEEE--------TTEEEEEEEEEEEC-CTTTTHHHHSSCC-HHHHHHHHHHHHHHHHHH
T ss_pred             CCCc-EEEEEEECcCcEEEEEEEEc--------CCcEEEEeeeeEEe-ecCCCccccCCcC-HHHHHHHHHHHHHHHHHH
Confidence            4544 68899999999999999972        33  2344433321 110       011 344555555555444   


Q ss_pred             HHcCCCccccceEEEeecCCCCchhHHHHHHHHHhhCCCCceEEEeCcHHHHHH---hh--cCC-CCCeEEEEECcccee
Q 020972           86 LKSGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALA---SG--TMG-KLHGCVLIAGTGTIA  159 (319)
Q Consensus        86 ~~~~~~~~~i~~Igig~pG~~~~~~~~~l~~~L~~~~~~~~pv~v~NDa~aa~~---g~--~~g-~~~~v~v~~GTGigg  159 (319)
                      +..++  +++.  .++.+..-+..+...+.+.+++.++  .++.|-+...=|.+   |.  ..+ ..+++++=+|-|+--
T Consensus        78 ~~~~v--~~i~--~vATsA~R~A~N~~~fl~~v~~~~G--~~i~vIsg~eEA~l~~~gv~~~l~~~~~~lvvDIGGGStE  151 (315)
T 1t6c_A           78 DEFKV--ERVK--AVATEAIRRAKNAEEFLERVKREVG--LVVEVITPEQEGRYAYLAVAYSLKPEGEVCVVDQGGGSTE  151 (315)
T ss_dssp             HHTTC--SEEE--EEECHHHHTSTTHHHHHHHHHHHTC--CCEEECCHHHHHHHHHHHHHHHTCCCSEEEEEEEETTEEE
T ss_pred             HHCCC--CeEE--EEEcHHHHcCcCHHHHHHHHHHHHC--CCEEEcCHHHHHHHHHHHHHhhcccCCCEEEEEeCCCcEE
Confidence            34443  2343  3677776555666778888998887  88988888764433   32  233 457899999999977


Q ss_pred             EeEecCCcEE
Q 020972          160 YGFTEDGRDA  169 (319)
Q Consensus       160 ~gii~dG~~~  169 (319)
                      ..+..++++.
T Consensus       152 l~~~~~~~~~  161 (315)
T 1t6c_A          152 YVFGKGYKVR  161 (315)
T ss_dssp             EEEEETTEEE
T ss_pred             EEEEeCCcee
Confidence            6565566653

>2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus}

Probab=92.38  E-value=1  Score=41.30  Aligned_cols=45  Identities=13%  Similarity=0.023  Sum_probs=29.6

Q ss_pred             ceEEEeCcHHHHHHhhc----CC-CCCeEEEEECccceeEeEecCCcEEe
Q 020972          126 VRLYVHNDALAALASGT----MG-KLHGCVLIAGTGTIAYGFTEDGRDAR  170 (319)
Q Consensus       126 ~pv~v~NDa~aa~~g~~----~g-~~~~v~v~~GTGigg~gii~dG~~~r  170 (319)
                      .++.++++..+++++..    .. ....+++-+|.|..-..++.+|++..
T Consensus       166 ~~~~i~~ep~Aaa~~~~~~~~~~~~~~~~vvDiGggttdi~i~~~g~~~~  215 (377)
T 2ych_A          166 VPVVLDVKPFAGLYPLEARLAEEPDRVFLVLDIGAESTSLVLLRGDKPLA  215 (377)
T ss_dssp             EEEEEEEHHHHTTGGGHHHHHTSTTCEEEEEEECSSCEEEEEEETTEEEE
T ss_pred             ceEEEecchHHHHHHHHhhcccccCCeEEEEEECCCcEEEEEEECCEEEE
Confidence            46777888777655421    11 22357888998887777777887654

>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A

Probab=92.35  E-value=1.5  Score=44.77  Aligned_cols=98  Identities=14%  Similarity=0.087  Sum_probs=59.5

Q ss_pred             cEEEEEEcC-ccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceEEE
Q 020972           22 EVILGLDGG-TTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCL  100 (319)
Q Consensus        22 ~~~lGIDiG-GTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Igi  100 (319)
                      ..+||+|-| .|.++++++|.         +|+++.....-+..+. ...+...+.+.    +++.++.     +..|+|
T Consensus       329 ~~vlg~dpg~r~g~k~a~vd~---------~G~~l~~~~iy~~~~~-~~~~~~~~~l~----~li~~~~-----~~~IaI  389 (785)
T 3bzc_A          329 RATLGLDPGLRTGVKVAVVDA---------TGKLLDTATVYPHAPK-NQWDQTLAVLA----ALCAKHQ-----VELIAI  389 (785)
T ss_dssp             CCEEEEECCSSSCEEEEEECT---------TSCEEEEEEECCSGGG-CCHHHHHHHHH----HHHHHHT-----CCEEEE
T ss_pred             CeEEEECCCCcCceEEEEECC---------CCCEEEEEEEecCCch-hHHHHHHHHHH----HHHHHcC-----CCEEEE
Confidence            479999999 69999999999         9999998876444332 23344444444    4455443     334555


Q ss_pred             eecCCCCchhHHHHHHHHHhhCCCCceEEEeCcHHHHHH
Q 020972          101 AVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALA  139 (319)
Q Consensus       101 g~pG~~~~~~~~~l~~~L~~~~~~~~pv~v~NDa~aa~~  139 (319)
                      |- |.-+.+...-+.+.+++.-...+|+.+.|++-+-.+
T Consensus       390 Gn-gtasret~~~v~~l~~~~~~~~i~~v~v~e~gArvy  427 (785)
T 3bzc_A          390 GN-GTASRETDKLAGELIKKYPGMKLTKIMVSEAGASVY  427 (785)
T ss_dssp             ES-STTHHHHHHHHHHHHHHCGGGCCEEEEECCHHHHHH
T ss_pred             CC-CccCHHHHHHHHHHHHhcccCCCCEEEEcCCcCCHH
Confidence            53 333333333344444432101278999999887555

>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ...

Probab=92.27  E-value=3.9  Score=37.56  Aligned_cols=91  Identities=18%  Similarity=0.243  Sum_probs=61.5

Q ss_pred             HHHHHHHHHHH-HcCCCccccceEEEeecCCCCchhHHHHHHHHHhhCCCCceEEEeCcHHHHHHhhcCCCCCeEEEEEC
Q 020972           76 TIEKVMADALL-KSGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTMGKLHGCVLIAG  154 (319)
Q Consensus        76 ~i~~~i~~~l~-~~~~~~~~i~~Igig~pG~~~~~~~~~l~~~L~~~~~~~~pv~v~NDa~aa~~g~~~g~~~~v~v~~G  154 (319)
                      .+.++++.++. ..+.++. -..+-+..|-.........+.+.+-+.++. .-+++.|..-+|+++.  |..++++|=+|
T Consensus        81 ~~e~i~~~~~~~~L~~~~~-~~~vvit~p~~~~~~~r~~~~e~~fe~~g~-~~~~~~~e~~aaa~a~--g~~~~lVvDiG  156 (375)
T 2fxu_A           81 DMEKIWHHTFYNELRVAPE-EHPTLLTEAPLNPKANREKMTQIMFETFNV-PAMYVAIQAVLSLYAS--GRTTGIVLDSG  156 (375)
T ss_dssp             HHHHHHHHHHHTTSCCCGG-GSCEEEEECTTCCHHHHHHHHHHHHHTTCC-SEEEEEEHHHHHHHHT--TCSSEEEEEEC
T ss_pred             HHHHHHHHHHHHhcCCCCc-CCcEEEEeCCCCcHHHHHHHHHHHHHhcCc-ceEEEccchheeeeec--CCCeEEEEEcC
Confidence            34555555653 3344443 234678888777665556677777667762 3499999999998864  44689999999


Q ss_pred             ccceeEeEecCCcEEe
Q 020972          155 TGTIAYGFTEDGRDAR  170 (319)
Q Consensus       155 TGigg~gii~dG~~~r  170 (319)
                      .|.--...+.+|....
T Consensus       157 ~gtt~v~~v~~G~~~~  172 (375)
T 2fxu_A          157 DGVTHNVPIYEGYALP  172 (375)
T ss_dssp             SSCEEEEEEETTEECG
T ss_pred             CCceEEeEeECCEEec
Confidence            9986655677886543

>3r6m_A YEAZ, resuscitation promoting factor; actin/HSP70 nucleotide-binding fold, bacterial resuscitation BUT non-culturable state, Y YJEE; 3.10A {Vibrio parahaemolyticus}

Probab=92.15  E-value=3.7  Score=34.99  Aligned_cols=96  Identities=15%  Similarity=0.095  Sum_probs=66.6

Q ss_pred             EEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceEEEee
Q 020972           23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV  102 (319)
Q Consensus        23 ~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Igig~  102 (319)
                      .+|+||--...+.+++++          +++++.+..... ..   .    .+.|...++++++++++...++.+|.++.
T Consensus         3 ~iLaIdTS~~~~svAl~~----------~~~~~~~~~~~~-~~---H----s~~L~p~i~~~L~~a~~~~~dld~Iav~~   64 (213)
T 3r6m_A            3 KILAIDTATENCSVALLV----------NDQVISRSEVAP-RD---H----TKKVLPMVDEVLKEAGLTLQDLDALAFGR   64 (213)
T ss_dssp             CEEEEECSSSEEEEEEES----------SSCEEEEEEECC-SC---C----HHHHHHHHHHHHHTTTCCTTTCSEEEEEE
T ss_pred             EEEEEEccCcceEEEEEE----------CCEEEEEEEech-HH---H----HHHHHHHHHHHHHHcCCCHHHccEEEEec
Confidence            599999888888999987          478877754321 11   2    24566788899999999888999988764


Q ss_pred             cCCCCchh---HHHHHHHHHhhCCCCceEEEeCcHHHHHH
Q 020972          103 SGVNHPTD---QQRILNWLRDIFPGNVRLYVHNDALAALA  139 (319)
Q Consensus       103 pG~~~~~~---~~~l~~~L~~~~~~~~pv~v~NDa~aa~~  139 (319)
                       ||.+...   +....+-|...++  +|++=.|--.+-++
T Consensus        65 -GPGsfTglRig~~~AkgLa~~~~--iPl~gVstL~a~a~  101 (213)
T 3r6m_A           65 -GPGSFTGVRIGIGIAQGLAFGAE--LPMIGVSTLAAMAQ  101 (213)
T ss_dssp             -ESSCHHHHHHHHHHHHHHHHHTT--CCEEEEEHHHHHHH
T ss_pred             -CCCchhhHHHHHHHHHHHHHHhC--CCEEEEcCHHHHHH
Confidence             4444322   3445666766676  89888876665444

>2a6a_A Hypothetical protein TM0874; glycoprotein endopeptidase, structural genomics, JOI for structural genomics, JCSG; 2.50A {Thermotoga maritima} SCOP: c.55.1.9 c.55.1.9

Probab=90.95  E-value=5.2  Score=34.14  Aligned_cols=97  Identities=8%  Similarity=-0.071  Sum_probs=67.6

Q ss_pred             cEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceEEEe
Q 020972           22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLA  101 (319)
Q Consensus        22 ~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Igig  101 (319)
                      .++|+||--...+.+++++.          ++++ +.......       .-.+.|...|+++++++++...++.+|.++
T Consensus        12 ~~iLaidTS~~~~sval~~~----------~~~l-~~~~~~~r-------~Hse~L~p~i~~~L~~a~~~~~dld~Iav~   73 (218)
T 2a6a_A           12 HMNVLALDTSQRIRIGLRKG----------EDLF-EISYTGEK-------KHAEILPVVVKKLLDELDLKVKDLDVVGVG   73 (218)
T ss_dssp             -CEEEEEECSSSEEEEEEET----------TEEE-EEEEESCG-------GGGGHHHHHHHHHHHHHTCCGGGCSEEEEE
T ss_pred             ceEEEEEcCCcCeEEEEEEC----------CEEE-EEEecchH-------HHHHHHHHHHHHHHHHcCCCHHHCCEEEEE
Confidence            47999999999999999984          6677 43321111       112457778888999999999999999886


Q ss_pred             ecCCCCchh---HHHHHHHHHhhCCCCceEEEeCcHHHHHH
Q 020972          102 VSGVNHPTD---QQRILNWLRDIFPGNVRLYVHNDALAALA  139 (319)
Q Consensus       102 ~pG~~~~~~---~~~l~~~L~~~~~~~~pv~v~NDa~aa~~  139 (319)
                      . ||.+...   +....+-|...++  +|++=.|--.+-++
T Consensus        74 ~-GPGsfTGlRiG~~~Ak~La~~~~--iPl~gVs~l~a~a~  111 (218)
T 2a6a_A           74 I-GPGGLTGLRVGIATVVGLVSPYD--IPVAPLNSFEMTAK  111 (218)
T ss_dssp             C-CSSCHHHHHHHHHHHHHHHGGGT--CCEEEECHHHHHHH
T ss_pred             c-CCCchHhHHHHHHHHHHHHHHcC--CCEEEeCcHHHHHh
Confidence            3 5554432   3455667776776  89988887765544

>1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A

Probab=90.37  E-value=9.7  Score=34.17  Aligned_cols=73  Identities=15%  Similarity=0.141  Sum_probs=51.3

Q ss_pred             ceEEEeecCCCCchhHHHHHHHHHhhCCCCceEEEeCcHHHHHHhhcC---CCCCeEEEEECccceeEeEecCCcEEe
Q 020972           96 RAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTM---GKLHGCVLIAGTGTIAYGFTEDGRDAR  170 (319)
Q Consensus        96 ~~Igig~pG~~~~~~~~~l~~~L~~~~~~~~pv~v~NDa~aa~~g~~~---g~~~~v~v~~GTGigg~gii~dG~~~r  170 (319)
                      ..+.+++|-..+......+.+.++. .+. ..+.+.|+..+|+++...   .....+++=+|-|.--..++..|.+..
T Consensus        96 ~~~vitvP~~~~~~~r~~~~~a~~~-aG~-~~~~li~ep~Aaa~~~~~~~~~~~~~lVvDiGggttdvsv~~~~~~~~  171 (344)
T 1jce_A           96 PRVVIGVPIGITDVERRAILDAGLE-AGA-SKVFLIEEPMAAAIGSNLNVEEPSGNMVVDIGGGTTEVAVISLGSIVT  171 (344)
T ss_dssp             CEEEEEECTTCCHHHHHHHHHHHHH-TTC-SEEEEEEHHHHHHHHTTCCTTSSSCEEEEEECSSCEEEEEEETTEEEE
T ss_pred             CeEEEEECCCCCHHHHHHHHHHHHH-cCC-CeEeccCCHHHHHHhcCCCCCCCceEEEEEeCCCeEEEEEEEcCCEEe
Confidence            5677999987666556667776654 442 468999999998886432   224678899998886666766776553

>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A

Probab=90.37  E-value=4.3  Score=37.77  Aligned_cols=91  Identities=20%  Similarity=0.230  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHH-cCCCccccceEEEeecCCCCchhHHHHHHHHHhhCCCCceEEEeCcHHHHHHhhc-------CCCCCe
Q 020972           77 IEKVMADALLK-SGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGT-------MGKLHG  148 (319)
Q Consensus        77 i~~~i~~~l~~-~~~~~~~i~~Igig~pG~~~~~~~~~l~~~L~~~~~~~~pv~v~NDa~aa~~g~~-------~g~~~~  148 (319)
                      ..++++.++.+ .+.++. ...+-+..|-..+......+.+.+-+.++. ..+++.|++.+|+++.+       .+. ++
T Consensus        89 ~e~i~~~~~~~~L~~~~~-~~~vvit~p~~~~~~~r~~~~e~~fe~~g~-~~~~l~~ep~aa~~a~~~~~~~~~~~~-~g  165 (418)
T 1k8k_A           89 MERFMEQVIFKYLRAEPE-DHYFLLTEPPLNTPENREYTAEIMFESFNV-PGLYIAVQAVLALAASWTSRQVGERTL-TG  165 (418)
T ss_dssp             HHHHHHHHHHTTTCCCGG-GCCEEEEECTTCCHHHHHHHHHHHHHTSCC-SEEEEEEHHHHHHHHGGGSTTCCSCCC-CE
T ss_pred             HHHHHHHHHHhccCCCCC-CCcEEEEeCCCCCHHHHHHHHHHHHHhcCC-CEEEEechHHHHhhhhhcccccCCCCC-eE
Confidence            34445555532 344443 346778889877666666777777566762 35899999999888632       344 78


Q ss_pred             EEEEECccceeEeEecCCcEEe
Q 020972          149 CVLIAGTGTIAYGFTEDGRDAR  170 (319)
Q Consensus       149 v~v~~GTGigg~gii~dG~~~r  170 (319)
                      ++|-+|.|.--...+.+|....
T Consensus       166 lVvDiG~gtt~v~~v~~G~~~~  187 (418)
T 1k8k_A          166 TVIDSGDGVTHVIPVAEGYVIG  187 (418)
T ss_dssp             EEEEESSSCEEEEEEETTEECG
T ss_pred             EEEEcCCCceEEEEeECCEEcc
Confidence            9999999986666677887543

>4gni_A Putative heat shock protein; HSP70-type ATPase, ATP binding protein, magnesium binding, C translational chaperone; HET: ATP; 1.80A {Chaetomium thermophilum var}

Probab=88.91  E-value=9.6  Score=35.17  Aligned_cols=67  Identities=9%  Similarity=-0.042  Sum_probs=44.2

Q ss_pred             ccceEEEeecCCCCchhHHHHHHHHHhhCCCCceEEEeCcHHHHHHhhcCC------CCCeEEEEECccceeEeE
Q 020972           94 AVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTMG------KLHGCVLIAGTGTIAYGF  162 (319)
Q Consensus        94 ~i~~Igig~pG~~~~~~~~~l~~~L~~~~~~~~pv~v~NDa~aa~~g~~~g------~~~~v~v~~GTGigg~gi  162 (319)
                      ++..+.+++|-.-+......+++..+.. +. ..+.+.|+..||+++-...      ....+++=+|-|..-..+
T Consensus       149 ~~~~~vitvPa~~~~~~r~~~~~a~~~A-Gl-~~~~li~Ep~AAa~~~~~~~~~~~~~~~vlv~D~GgGT~dvsv  221 (409)
T 4gni_A          149 KVTSAVITIPTNFTEKQKAALIAAAAAA-DL-EVLQLISEPAAAVLAYDARPEATISDKIIVVADLGGSRSDVTV  221 (409)
T ss_dssp             CCCEEEEEECTTCCHHHHHHHHHHHHHT-TC-EEEEEEEHHHHHHHHTTC------CCEEEEEEEECSSCEEEEE
T ss_pred             CCCeEEEEECCCCCHHHHHHHHHHHHHc-CC-CeEEEEcCHHHHHHHHhcccccCCCCCEEEEEECCCCceEEEE
Confidence            4567789999987766666677766654 32 4688999999888763221      123566778877644433

>3mdq_A Exopolyphosphatase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE; 1.50A {Cytophaga hutchinsonii}

Probab=88.85  E-value=4.9  Score=36.24  Aligned_cols=135  Identities=12%  Similarity=0.103  Sum_probs=82.0

Q ss_pred             CCcEEEEEEcCccceeEEEEeCccCCCCCCCCC--CeEEEEecCCC---Ccc---ccCHHHHHHHHHHHHHHH---HHHc
Q 020972           20 GREVILGLDGGTTSTVCICMPVISMSDSLPDPL--PVLARAAAGCS---NHN---SVGEDAARETIEKVMADA---LLKS   88 (319)
Q Consensus        20 m~~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G--~il~~~~~~~~---~~~---~~~~~~~~~~i~~~i~~~---l~~~   88 (319)
                      |+..+..||+|..+++..+++..        ++  +++.+.+.+..   ...   ..+ ++.+++..++++++   ++..
T Consensus         2 m~~~~A~IDiGSNsirL~I~~~~--------~~~~~~i~~~k~~vrLg~g~~~~g~ls-~eai~r~~~~L~~f~~~~~~~   72 (315)
T 3mdq_A            2 MSQRIGVIDMGTNTFHLLITDIV--------NDRPHTLVNEKSAVGLGKGGITKGFIT-EEAMDRALDTLKKFRVILDEH   72 (315)
T ss_dssp             --CEEEEEEECSSEEEEEEEEEE--------TTEEEEEEEEEEECCSSTTTGGGTCCC-HHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCceEEEEEecCCcEEEEEEEEc--------CCceEEeeeceeeeeccccccccCCcC-HHHHHHHHHHHHHHHHHHHHc
Confidence            66779999999999999999862        23  33444433210   000   112 34455555555544   4444


Q ss_pred             CCCccccceEEEeecCCCCchhHHHHHHHHHhhCCCCceEEEeCcHHHH---HHhh--cCC--CCCeEEEEECccceeEe
Q 020972           89 GSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAA---LASG--TMG--KLHGCVLIAGTGTIAYG  161 (319)
Q Consensus        89 ~~~~~~i~~Igig~pG~~~~~~~~~l~~~L~~~~~~~~pv~v~NDa~aa---~~g~--~~g--~~~~v~v~~GTGigg~g  161 (319)
                      ++  +++.  .++.+.+-+..+...+.+.+++.++  .++.|-+.-.=|   .+|.  ...  ..+.+++=+|.||--..
T Consensus        73 ~v--~~v~--~vATsA~R~A~N~~~fl~~i~~~tG--~~i~vIsG~eEA~l~~~gv~~~~~~~~~~~lviDIGGGStEl~  146 (315)
T 3mdq_A           73 AV--VHVI--ATGTSAVRSGSNKQVLIDRIKKEVN--IDVEVIDGAREAELIFRGVQQAVPMEDHISLAMDIGGGSVEFI  146 (315)
T ss_dssp             TC--CEEE--EEECHHHHHCTTHHHHHHHHHHHHC--CCEEECCHHHHHHHHHHHHHHHSCCTTCCEEEEEECSSCEEEE
T ss_pred             CC--CEEE--EEeeHHHHcCcCHHHHHHHHHHHHC--CCeEEeCHHHHHHHHHHHHHhcCCCCCCCEEEEEeCCCceEEE
Confidence            44  2343  4666666444556778888988887  888888776633   3332  122  35789999999997766


Q ss_pred             EecCCcEE
Q 020972          162 FTEDGRDA  169 (319)
Q Consensus       162 ii~dG~~~  169 (319)
                      +..++++.
T Consensus       147 ~~~~~~~~  154 (315)
T 3mdq_A          147 IGNKNEIL  154 (315)
T ss_dssp             EECSSCEE
T ss_pred             EEECCeEe
Confidence            66666654

>3t69_A Putative 2-dehydro-3-deoxygalactonokinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.55A {Sinorhizobium meliloti}

Probab=88.15  E-value=0.74  Score=42.09  Aligned_cols=35  Identities=20%  Similarity=0.040  Sum_probs=27.4

Q ss_pred             cCCCcEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecC
Q 020972           18 SGGREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAG   61 (319)
Q Consensus        18 ~~m~~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~   61 (319)
                      ..|..++|+||-|.|++|+-++|.         +|+++.+.+.+
T Consensus         3 ~~~~~~~IavDWGTSnlRa~l~~~---------~g~vl~~~~~~   37 (330)
T 3t69_A            3 MTTAGYYAAVDWGTSSFRLWIIGE---------DGAVLAERRSA   37 (330)
T ss_dssp             -----CEEEEEECSSCEEEEEECT---------TSCEEEEEEES
T ss_pred             cCCCCCEEEEEecchheehheecC---------CCCchhhhcCC
Confidence            445668999999999999999998         89999987753

>1nbw_A Glycerol dehydratase reactivase alpha subunit; molecular chaperone, actin-like ATPase domain, beta/BETA/alpha swiveling domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP: c.8.6.1 c.55.1.6 c.55.1.6

Probab=87.64  E-value=1.1  Score=43.78  Aligned_cols=60  Identities=18%  Similarity=0.193  Sum_probs=41.1

Q ss_pred             cEEEEEEcCccceeEEEEeCccCCCCCCCCC--CeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCC
Q 020972           22 EVILGLDGGTTSTVCICMPVISMSDSLPDPL--PVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSN   91 (319)
Q Consensus        22 ~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G--~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~   91 (319)
                      +|+.|+|||.|+|.+++.+..        +|  +++.....+++..  .+--.-+..+.+.+++++++++..
T Consensus         2 ~~i~GiDIGnsttev~l~~~~--------~g~i~~l~~g~~~ttGi--KGt~~Ni~g~~~si~~a~~~a~~~   63 (607)
T 1nbw_A            2 PLIAGIDIGNATTEVALASDY--------PQARAFVASGIVATTGM--KGTRDNIAGTLAALEQALAKTPWS   63 (607)
T ss_dssp             CEEEEEEECSSEEEEEEEECB--------TTBCCCCEEEEEECCSS--TTSGGGHHHHHHHHHHHHTTSSCC
T ss_pred             cEEEEEEecCceEEEEEEEEc--------CCeEEEEEeecccCCcc--ceeeeCHHHHHHHHHHHHHHhCCc
Confidence            699999999999999988752        34  5677777665543  232333445666677777777655

>1u6z_A Exopolyphosphatase; alpha/beta protein, askha (acetate and sugar kinases, HSC70, superfamily; 1.90A {Escherichia coli} SCOP: a.211.1.5 c.55.1.8 c.55.1.8 PDB: 2flo_A*

Probab=87.48  E-value=10  Score=36.62  Aligned_cols=134  Identities=12%  Similarity=0.074  Sum_probs=83.7

Q ss_pred             EEEEEEcCccceeEEEEeCccCCCCCCCCC--CeEEEEecCCC---CccccC--HHHHHHHHHHHHHHHHHHcC-CCccc
Q 020972           23 VILGLDGGTTSTVCICMPVISMSDSLPDPL--PVLARAAAGCS---NHNSVG--EDAARETIEKVMADALLKSG-SNRSA   94 (319)
Q Consensus        23 ~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G--~il~~~~~~~~---~~~~~~--~~~~~~~i~~~i~~~l~~~~-~~~~~   94 (319)
                      .+..||+|..+++..+++..        ++  +++.+.+.+..   .....+  .++.+++..++++++.+... ...++
T Consensus        12 ~~AaIDiGSNSirL~I~~~~--------~~~~~~l~~~k~~vrLg~g~~~~g~Ls~eai~r~~~~L~~f~~~~~~~~v~~   83 (513)
T 1u6z_A           12 EFAAVDLGSNSFHMVIARVV--------DGAMQIIGRLKQRVHLADGLGPDNMLSEEAMTRGLNCLSLFAERLQGFSPAS   83 (513)
T ss_dssp             CEEEEEECSSCEEEEEEEEE--------TTEEEEEEEEEECCCTGGGBCTTCCBCHHHHHHHHHHHHHHHHHTTTCCGGG
T ss_pred             eEEEEEeccccEEEEEEEEc--------CCeeEEEEeeEEEEeccCcccccCCcCHHHHHHHHHHHHHHHHHHHhCCCCE
Confidence            58999999999999999862        23  33444443211   000011  14567777777777766543 22233


Q ss_pred             cceEEEeecCCCCchhHHHHHHHHHhhCCCCceEEEeCcHHHH---HHhh--cCC-CCCeEEEEECccceeEeEecCCcE
Q 020972           95 VRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAA---LASG--TMG-KLHGCVLIAGTGTIAYGFTEDGRD  168 (319)
Q Consensus        95 i~~Igig~pG~~~~~~~~~l~~~L~~~~~~~~pv~v~NDa~aa---~~g~--~~g-~~~~v~v~~GTGigg~gii~dG~~  168 (319)
                      +.  .++.+..=+..+...+.+.+++.++  .++.|-+--.=|   .+|.  ... .++.+++=+|.||--..+..++++
T Consensus        84 v~--~vATsA~R~A~N~~~fl~~i~~~tG--~~i~vIsG~eEA~l~~~gv~~~~~~~~~~lviDIGGGStEl~~~~~~~~  159 (513)
T 1u6z_A           84 VC--IVGTHTLRQALNATDFLKRAEKVIP--YPIEIISGNEEARLIFMGVEHTQPEKGRKLVIDIGGGSTELVIGENFEP  159 (513)
T ss_dssp             EE--EEECHHHHHCTTHHHHHHHHTTTCS--SCEEECCHHHHHHHHHHHHHHHSCCCSCEEEEEECSSCEEEEEEETTEE
T ss_pred             EE--EEecHHHHcCcCHHHHHHHHHHHHC--CCEEEeCHHHHHHHHHHHHHhhccCCCCEEEEEECCCcEEEEEEeCCee
Confidence            43  4666665445556778888999987  888888876533   3332  122 236899999999966544445554

>2d0o_A DIOL dehydratase-reactivating factor large subunit; chaperone; HET: ADP; 2.00A {Klebsiella oxytoca} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 PDB: 2d0p_A

Probab=87.12  E-value=1.5  Score=42.78  Aligned_cols=66  Identities=20%  Similarity=0.127  Sum_probs=43.9

Q ss_pred             cEEEEEEcCccceeEEEEeCccCCCCCCCCC--CeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccc
Q 020972           22 EVILGLDGGTTSTVCICMPVISMSDSLPDPL--PVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVR   96 (319)
Q Consensus        22 ~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G--~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~   96 (319)
                      +|+.|||||-+.|.++|.+..       ++|  +.+.+...+++..  .+-.+-+.-+.+++++++++.+.+.+++.
T Consensus         2 ~~i~gvdign~tte~~la~~~-------~~~~~~f~~s~~~~ttg~--kgt~~n~~g~~~~l~~~~~~~~~~~~~~~   69 (610)
T 2d0o_A            2 RYIAGIDIGNSSTEVALATLD-------EAGALTITHSALAETTGI--KGTLRNVFGIQEALALVARGAGIAVSDIS   69 (610)
T ss_dssp             EEEEEEEECSSEEEEEEEEEC-------TTCCEEEEEEEEEECCSS--TTSTTHHHHHHHHHHHHHHHHTCCGGGEE
T ss_pred             cEEEEEecCCcchheeeeeec-------CCCceEEeeccccccCCc--cCcHHHHHHHHHHHHHHHHHcCCChhhce
Confidence            689999999999998887651       024  4566666555543  23333445567777888888887665544

>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}

Probab=86.61  E-value=3.4  Score=43.44  Aligned_cols=98  Identities=11%  Similarity=0.149  Sum_probs=57.5

Q ss_pred             cEEEEEEcCc-c----ceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccc
Q 020972           22 EVILGLDGGT-T----STVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVR   96 (319)
Q Consensus        22 ~~~lGIDiGG-T----k~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~   96 (319)
                      ..++|+|-|- |    .++++++|.         +|+++...++.+........+...+    .+.+++.++     ++.
T Consensus       519 ~~VlaldpG~~~~~~~g~k~a~vd~---------~G~~l~~~~i~~~~~~~~~~~~~~~----~l~~li~~~-----~~~  580 (1030)
T 3psf_A          519 PKILSLTCGQGRFGADAIIAVYVNR---------KGDFIRDYKIVDNPFDKTNPEKFED----TLDNIIQSC-----QPN  580 (1030)
T ss_dssp             CCEEEEECTTCCTTTSCEEEEEECT---------TSCEEEEEEECSCTTCSSCCHHHHH----HHHHHHHHH-----CCS
T ss_pred             CeEEEecCCCCCCCCCCeEEEEECC---------CCCEEEEEEEcCCCCChhhHHHHHH----HHHHHHHHc-----CCc
Confidence            4799999983 2    799999999         9999999887422111112233333    344455554     344


Q ss_pred             eEEEeecCCCCchhH---HHHHHHHHhh-C----CCCceEEEeCcHHHHHHh
Q 020972           97 AVCLAVSGVNHPTDQ---QRILNWLRDI-F----PGNVRLYVHNDALAALAS  140 (319)
Q Consensus        97 ~Igig~pG~~~~~~~---~~l~~~L~~~-~----~~~~pv~v~NDa~aa~~g  140 (319)
                      .|+||-.   +.+..   ..+.+.+++. +    +..+++.+.|++-|..+.
T Consensus       581 ~IaIGn~---s~et~~l~~~l~~~i~~~~~~~~~~~~i~~~iV~e~gAsvYs  629 (1030)
T 3psf_A          581 AIGINGP---NPKTQKFYKRLQEVLHKKQIVDSRGHTIPIIYVEDEVAIRYQ  629 (1030)
T ss_dssp             EEEECCS---STHHHHHHHHHHHHHHHTTCBCTTSCBCCEEECCCTTHHHHH
T ss_pred             EEEECCC---CHHHHHHHHHHHHHHHhhccccccCCCccEEEecchHHHHHH
Confidence            5556532   22221   2344444432 1    112789999999887664

>2gel_A Putative GRAM negative resuscitation promoting FA; YEAZ, RPF, actin-like-fold, glycoprotease, chaperone; 2.05A {Salmonella typhimurium} PDB: 2gem_A 1okj_A

Probab=86.06  E-value=3.7  Score=35.33  Aligned_cols=96  Identities=15%  Similarity=0.041  Sum_probs=64.2

Q ss_pred             EEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceEEEee
Q 020972           23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV  102 (319)
Q Consensus        23 ~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Igig~  102 (319)
                      ++|+||--...+.+++++.          ++++.+..... ..   ..    +.+...|+++++++++...+|.+|.++.
T Consensus         2 ~iL~idTs~~~~sval~~~----------~~~~~~~~~~~-~~---h~----~~l~~~i~~~L~~a~~~~~did~Iav~~   63 (231)
T 2gel_A            2 RILAIDTATEACSVALWNN----------GTINAHFELCP-RE---HT----QRILPMVQEILAASGASLNEIDALAFGR   63 (231)
T ss_dssp             EEEEEECSSSEEEEEEEET----------TEEEEEEEECC-SC---CH----HHHHHHHHHHHHHTTCCGGGCSEEEEEC
T ss_pred             eEEEEECCCcCeEEEEEEC----------CEEEEEEhhhh-HH---HH----HHHHHHHHHHHHHcCCCHHHCCEEEEEc
Confidence            6899998888888999874          66665433211 11   12    3477888889999999999999998863


Q ss_pred             cCCCCchh---HHHHHHHHHhhCCCCceEEEeCcHHHHHH
Q 020972          103 SGVNHPTD---QQRILNWLRDIFPGNVRLYVHNDALAALA  139 (319)
Q Consensus       103 pG~~~~~~---~~~l~~~L~~~~~~~~pv~v~NDa~aa~~  139 (319)
                       |+.....   +....+-|...++  +|++-.|--.+-++
T Consensus        64 -GPGsftglRig~~~ak~la~~~~--~Pl~~V~~l~a~a~  100 (231)
T 2gel_A           64 -GPGSFTGVRIGIGIAQGLALGAN--LPMIGVSTLATMAQ  100 (231)
T ss_dssp             -CSSCHHHHHHHHHHHHHHHHTTT--CCEEEECHHHHHHH
T ss_pred             -CCChhHhHHHHHHHHHHHHHHcC--CCEEEeccHHHHHH
Confidence             4443322   2344555665565  89888876665443

>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}

Probab=85.19  E-value=4.3  Score=43.42  Aligned_cols=98  Identities=11%  Similarity=0.149  Sum_probs=57.6

Q ss_pred             cEEEEEEcCc-----cceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccc
Q 020972           22 EVILGLDGGT-----TSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVR   96 (319)
Q Consensus        22 ~~~lGIDiGG-----Tk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~   96 (319)
                      ..++|+|-|-     |.++++++|.         +|+++...++.+........+...+    .+.+++.++     ++.
T Consensus       516 ~~VlaldpG~r~~g~~g~k~a~vD~---------~G~vl~~~~i~~~~~~~~~~~~a~~----~l~~li~~~-----~~~  577 (1219)
T 3psi_A          516 PKILSLTCGQGRFGADAIIAVYVNR---------KGDFIRDYKIVDNPFDKTNPEKFED----TLDNIIQSC-----QPN  577 (1219)
T ss_dssp             CCEEEEECTTCCTTTTCEEEEEECT---------TSCEEEEEEECSCTTCSSCSHHHHH----HHHHHHHHH-----CCS
T ss_pred             CeEEEecCCCCCCCCCceEEEEECC---------CCCEEEEEEEcCCCCChhhHHHHHH----HHHHHHHHc-----CCc
Confidence            4799999983     2799999999         9999999887422111112233333    344455554     344


Q ss_pred             eEEEeecCCCCchhH---HHHHHHHHhh-C----CCCceEEEeCcHHHHHHh
Q 020972           97 AVCLAVSGVNHPTDQ---QRILNWLRDI-F----PGNVRLYVHNDALAALAS  140 (319)
Q Consensus        97 ~Igig~pG~~~~~~~---~~l~~~L~~~-~----~~~~pv~v~NDa~aa~~g  140 (319)
                      .|+||-.   +.+..   ..+.+.+++. +    +..+++.+.|++-|..+.
T Consensus       578 vIaIGn~---sret~~l~~~l~~~i~~~~~~~~~~~~i~vviV~e~gAsvYs  626 (1219)
T 3psi_A          578 AIGINGP---NPKTQKFYKRLQEVLHKKQIVDSRGHTIPIIYVEDEVAIRYQ  626 (1219)
T ss_dssp             EEEECCS---STHHHHHHHHHHHHHHHTTCBCSSSCBCCEEECCCTTHHHHH
T ss_pred             EEEECCC---CHHHHHHHHHHHHHHHhhccccccCCCccEEEECchHHHHHh
Confidence            5556532   22221   2344444432 1    112789999999887764

>3cer_A Possible exopolyphosphatase-like protein; NESG, BLR13, Q8G5J2, X-RAY, structure, structural genomics, PSI-2; 2.40A {Bifidobacterium longum NCC2705}

Probab=84.84  E-value=10  Score=34.64  Aligned_cols=132  Identities=16%  Similarity=0.080  Sum_probs=79.4

Q ss_pred             CcEEEEEEcCccceeEEEEeCccCCCCCCCCC--CeEEEEecCCCCcc-------ccCHHHHHHHHHHHHHHHHHHcCC-
Q 020972           21 REVILGLDGGTTSTVCICMPVISMSDSLPDPL--PVLARAAAGCSNHN-------SVGEDAARETIEKVMADALLKSGS-   90 (319)
Q Consensus        21 ~~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G--~il~~~~~~~~~~~-------~~~~~~~~~~i~~~i~~~l~~~~~-   90 (319)
                      ...+..||+|..++|..+++...       ++  +++.+.+.. ....       ..+ ++.+++..++++++.+.... 
T Consensus        15 ~~~~A~IDiGSNsiRL~I~~~~~-------~~~~~~i~~~k~~-vrLg~g~~~~g~ls-~eai~r~~~aL~~f~~~~~~~   85 (343)
T 3cer_A           15 SVTVAGIDCGTNSIRLKIARVDA-------DGMHEVVPRILRV-IRLGQDVDKTHRFA-DEALERAYVAAREFAGVIAEH   85 (343)
T ss_dssp             CEEEEEEEECSSCEEEEEEEEET-------TEEEEEEEEEEEC-CCTTTTHHHHSSCC-HHHHHHHHHHHHHHHHHHTTS
T ss_pred             CCeEEEEEcccceeEeEEEEEcC-------CCCEEEEEEEEEE-eeCCCCccccCCcC-HHHHHHHHHHHHHHHHHHHHC
Confidence            34789999999999999998610       23  234443332 1111       012 35566667777666554322 


Q ss_pred             CccccceEEEeecCCCCchhHHHHHHHHHhhCCCCceEEEeCcHHH---HHHhh--cCC----CCCeEEEEECccceeEe
Q 020972           91 NRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALA---ALASG--TMG----KLHGCVLIAGTGTIAYG  161 (319)
Q Consensus        91 ~~~~i~~Igig~pG~~~~~~~~~l~~~L~~~~~~~~pv~v~NDa~a---a~~g~--~~g----~~~~v~v~~GTGigg~g  161 (319)
                      ..+++  ..++.+..=+..+...+.+.+++.++  .++.|-+--.=   ..+|.  ...    ..+.+++=+|.|+--..
T Consensus        86 ~v~~v--~~vATsA~R~A~N~~~fl~~v~~~tG--i~ieVIsG~eEA~l~~~gv~~~~~~~~~~~~~lviDIGGGStel~  161 (343)
T 3cer_A           86 PIDGL--RFVATSATRDAENREEFEDEIERILG--VRPEVIPGTEEADLSFLGATSVVNRDDLPAPYLVVDLGGGSTELV  161 (343)
T ss_dssp             CCSEE--EEEECHHHHHCTTHHHHHHHHHHHHS--SCCEECCHHHHHHHHHHHHHSSCCTTTCCSSEEEEEECSSCEEEE
T ss_pred             CCCeE--EEEecHHHHcCcCHHHHHHHHHHHHC--CCEEEeCHHHHHHHHHHHHHhhCccccccCCEEEEEeCCCceEEE
Confidence            11233  34667666444556778888988887  77777776553   33343  222    25689999999996654


Q ss_pred             EecC
Q 020972          162 FTED  165 (319)
Q Consensus       162 ii~d  165 (319)
                      +..+
T Consensus       162 ~~~~  165 (343)
T 3cer_A          162 IGGD  165 (343)
T ss_dssp             ECCC
T ss_pred             Eeec
Confidence            4434

>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ...

Probab=82.83  E-value=28  Score=31.76  Aligned_cols=90  Identities=14%  Similarity=0.072  Sum_probs=54.7

Q ss_pred             CHHHHHHHHHHHHHHHHHH-cCCCccccceEEEeecCCCCchhHHHHHHHHHhhCCCCceEEEeCcHHHHHHhhcC----
Q 020972           69 GEDAARETIEKVMADALLK-SGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTM----  143 (319)
Q Consensus        69 ~~~~~~~~i~~~i~~~l~~-~~~~~~~i~~Igig~pG~~~~~~~~~l~~~L~~~~~~~~pv~v~NDa~aa~~g~~~----  143 (319)
                      .++++...+.+.+.+..+. .+   .++..+.+++|-.-+......+++..+.. +. ..+.+.|+..||+++...    
T Consensus       134 ~~~ei~a~~L~~l~~~a~~~~~---~~~~~~vitvPa~~~~~~r~~~~~a~~~A-Gl-~~~~li~Ep~AAa~~~~~~~~~  208 (404)
T 3i33_A          134 FPEEISSMVLTKMKEIAEAYLG---GKVHSAVITVPAYFNDSQRQATKDAGTIT-GL-NVLRIINEPTAAAIAYGLDKKG  208 (404)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHS---SCCCEEEEEECTTCCHHHHHHHHHHHHHH-TC-EEEEEEEHHHHHHHHTTTTSSC
T ss_pred             cHHHHHHHHHHHHHHHHHHHhc---cCCCcEEEEECCCCCHHHHHHHHHHHHHc-CC-CeEEEeccHHHHHHHHHhhccc
Confidence            4555555444444433332 22   24567889999887766656666666544 32 468999999998886321    


Q ss_pred             ---CCCCeEEEEECccceeEeEe
Q 020972          144 ---GKLHGCVLIAGTGTIAYGFT  163 (319)
Q Consensus       144 ---g~~~~v~v~~GTGigg~gii  163 (319)
                         .....+++=+|.|..-..++
T Consensus       209 ~~~~~~~vlV~D~GgGT~dvsv~  231 (404)
T 3i33_A          209 CAGGEKNVLIFDLGGGTFDVSIL  231 (404)
T ss_dssp             SSSSCCEEEEEEECSSCEEEEEE
T ss_pred             ccCCCceEEEEECCCCcEEEEEE
Confidence               22345777788887554443

>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426}

Probab=81.03  E-value=24  Score=33.76  Aligned_cols=90  Identities=14%  Similarity=0.006  Sum_probs=53.9

Q ss_pred             CHHHHHHHHHHHHHHHHHH-cCCCccccceEEEeecCCCCchhHHHHHHHHHhhCCCCceEEEeCcHHHHHHhhcC---C
Q 020972           69 GEDAARETIEKVMADALLK-SGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTM---G  144 (319)
Q Consensus        69 ~~~~~~~~i~~~i~~~l~~-~~~~~~~i~~Igig~pG~~~~~~~~~l~~~L~~~~~~~~pv~v~NDa~aa~~g~~~---g  144 (319)
                      +++++...+.+-+.+..++ .+   .++..+.+++|-..+......+++..+. .+. ..+.+.|+..||+++-..   .
T Consensus        85 ~~~ei~a~~L~~l~~~ae~~l~---~~~~~~VitvPa~~~~~qr~a~~~a~~~-AGl-~~~~li~Ep~AAAlay~~~~~~  159 (509)
T 2v7y_A           85 TPQEISAIILQYLKSYAEDYLG---EPVTRAVITVPAYFNDAQRQATKDAGRI-AGL-EVERIINEPTAAALAYGLDKEE  159 (509)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHT---SCCCEEEEEECTTCCHHHHHHHHHHHHH-TTC-EEEEEEEHHHHHHHHTTGGGSC
T ss_pred             cHHHHHHHHHHHHHHHHHHHhC---CCCCeEEEEECCCCCHHHHHHHHHHHHH-cCC-CeEEEecCHHHHHHHHhhccCC
Confidence            4666655544443332222 22   2456678999997766555666666543 442 468899999998875321   1


Q ss_pred             CCCeEEEEECccceeEeEe
Q 020972          145 KLHGCVLIAGTGTIAYGFT  163 (319)
Q Consensus       145 ~~~~v~v~~GTGigg~gii  163 (319)
                      ....+++=+|.|..-..++
T Consensus       160 ~~~vlV~D~GgGT~Dvsv~  178 (509)
T 2v7y_A          160 DQTILVYDLGGGTFDVSIL  178 (509)
T ss_dssp             SEEEEEEEECSSCEEEEEE
T ss_pred             CCEEEEEECCCCeEEEEEE
Confidence            2356777888887544443

>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D

Probab=80.41  E-value=29  Score=34.03  Aligned_cols=89  Identities=15%  Similarity=0.044  Sum_probs=53.3

Q ss_pred             CHHHHHHHHHHHHHHHHHH-cCCCccccceEEEeecCCCCchhHHHHHHHHHhhCCCCceEEEeCcHHHHHHhhcCC---
Q 020972           69 GEDAARETIEKVMADALLK-SGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTMG---  144 (319)
Q Consensus        69 ~~~~~~~~i~~~i~~~l~~-~~~~~~~i~~Igig~pG~~~~~~~~~l~~~L~~~~~~~~pv~v~NDa~aa~~g~~~g---  144 (319)
                      +++++...+...+.+..+. .+.   .+..+.|.+|-.-+......+++..+.. +. ..+.+.|+..||+++-...   
T Consensus       111 ~p~ei~a~iL~~lk~~ae~~lg~---~v~~~VITVPa~f~~~qr~a~~~Aa~~A-Gl-~v~~li~EP~AAAlaygl~~~~  185 (605)
T 4b9q_A          111 APPQISAEVLKKMKKTAEDYLGE---PVTEAVITVPAYFNDAQRQATKDAGRIA-GL-EVKRIINEPTAAALAYGLDKGT  185 (605)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTS---CCCEEEEEECTTCCHHHHHHHHHHHHHT-TC-EEEEEEEHHHHHHHHHHTTSCC
T ss_pred             CHHHHHHHHHHHHHHHHHHHhCC---CCCeEEEEECCCCCHHHHHHHHHHHHHc-CC-ceEEEeCcHHHHHHHhhhhccC
Confidence            4555555444433333322 232   4667789999887766556666666543 32 4689999999988864211   


Q ss_pred             -CCCeEEEEECccceeEeE
Q 020972          145 -KLHGCVLIAGTGTIAYGF  162 (319)
Q Consensus       145 -~~~~v~v~~GTGigg~gi  162 (319)
                       .+..+++=+|.|..-..+
T Consensus       186 ~~~~vlV~DlGGGT~Dvsi  204 (605)
T 4b9q_A          186 GNRTIAVYDLGGGAFDISI  204 (605)
T ss_dssp             SSEEEEEEEECSSCEEEEE
T ss_pred             CCCEEEEEECCCCeEEEEE
Confidence             234567778887644433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	319
d1zc6a2	171	c.55.1.5 (A:122-292) Probable N-acetylglucosamine	3e-28
d2ch5a1	227	c.55.1.5 (A:118-344) N-acetylglucosamine kinase, N	3e-26
d1zxoa2	174	c.55.1.5 (A:107-280) Hypothetical protein BT3618 {	3e-19
d1zbsa1	176	c.55.1.5 (A:108-283) Hypothetical protein PG1100 {	3e-19
d2ch5a2	117	c.55.1.5 (A:1-117) N-acetylglucosamine kinase, NAG	2e-17
d1zbsa2	107	c.55.1.5 (A:1-107) Hypothetical protein PG1100 {Po	2e-11
d1zc6a1	114	c.55.1.5 (A:8-121) Probable N-acetylglucosamine ki	3e-08

>d1zc6a2 c.55.1.5 (A:122-292) Probable N-acetylglucosamine kinase CV2896 {Chromobacterium violaceum [TaxId: 536]} Length = 171

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: BadF/BadG/BcrA/BcrD-like
domain: Probable N-acetylglucosamine kinase CV2896
species: Chromobacterium violaceum [TaxId: 536]

 Score =  105 bits (263), Expect = 3e-28
 Identities = 36/132 (27%), Positives = 58/132 (43%), Gaps = 3/132 (2%)

Query: 148 GCVLIAGTGTIAYGFTEDGRDARAAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDTM 207
           G ++  GTG+I      DG    A G G   GD  SG  +  +A      A DGR   + 
Sbjct: 3   GIIVALGTGSIGEALYPDGSHREAGGWGYPSGDEASGAWLGQRAAQLTQMALDGRHSHSP 62

Query: 208 LTSNILSTLELSSPDELIGWTYVDPSWARIAALVPVVVSCAEAGDEVANKILQDSVEELA 267
           LT  +L  +       ++ W     + A+ A L P+V+S A   D  A+ +L+ + E+  
Sbjct: 63  LTRAVLDFVGG-DWQAMMAWNG-RATPAQFARLAPLVLSAAR-VDPEADALLRQAGEDAW 119

Query: 268 LSVKAVVQRLSL 279
              +A+  +  L
Sbjct: 120 AIARALDPQDEL 131

>d2ch5a1 c.55.1.5 (A:118-344) N-acetylglucosamine kinase, NAGK {Human (Homo sapiens) [TaxId: 9606]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: BadF/BadG/BcrA/BcrD-like
domain: N-acetylglucosamine kinase, NAGK
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (253), Expect = 3e-26
 Identities = 34/139 (24%), Positives = 56/139 (40%), Gaps = 4/139 (2%)

Query: 148 GCVLIAGTGTIAYGFTEDGRDARAAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDTM 207
           G VLI+GTG+       DG ++   G G ++GD GS Y IA QA+  V  + D       
Sbjct: 3   GVVLISGTGSNCRLINPDGSESGCGGWGHMMGDEGSAYWIAHQAVKIVFDSIDNLEAAPH 62

Query: 208 LTS----NILSTLELSSPDELIGWTYVDPSWARIAALVPVVVSCAEAGDEVANKILQDSV 263
                   +    ++     ++   Y D    R A     +   A+ GD ++  I + + 
Sbjct: 63  DIGYVKQAMFHYFQVPDRLGILTHLYRDFDKCRFAGFCRKIAEGAQQGDPLSRYIFRKAG 122

Query: 264 EELALSVKAVVQRLSLSGE 282
           E L   + AV+  +     
Sbjct: 123 EMLGRHIVAVLPEIDPVLF 141

>d1zxoa2 c.55.1.5 (A:107-280) Hypothetical protein BT3618 {Bacteroides thetaiotaomicron [TaxId: 818]} Length = 174

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: BadF/BadG/BcrA/BcrD-like
domain: Hypothetical protein BT3618
species: Bacteroides thetaiotaomicron [TaxId: 818]

 Score = 81.5 bits (201), Expect = 3e-19
 Identities = 25/151 (16%), Positives = 49/151 (32%), Gaps = 13/151 (8%)

Query: 148 GCVLIAGTGTIAYGFTEDGRDARAAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDTM 207
           G   I GTG+ +  +      +  +  G ILGD GSG  +    +               
Sbjct: 3   GIACILGTGSNSCFYNGKEIVSNISPLGFILGDEGSGAVLGKLLV----GDILKNQLPAT 58

Query: 208 LTSNILSTLELSSPDELIGWTYVDPSWARIAALVPVVVSCAEAGDEVANKILQDSVEELA 267
           L    L   +L+ P+ +            +A+L P +       +    +++ +S     
Sbjct: 59  LKEEFLKQFDLTPPEIIDRVYRQPFPNRFLASLSPFI--AQHLEEPAIRQLVMNSFIAFF 116

Query: 268 LSVKAVV----QRLSLSGEGVT--YTKILKE 292
                        +   G  +   Y +IL++
Sbjct: 117 RRNVMQYDYKQYPVHFIG-SIAYCYKEILQD 146

>d1zbsa1 c.55.1.5 (A:108-283) Hypothetical protein PG1100 {Porphyromonas gingivalis [TaxId: 837]} Length = 176

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: BadF/BadG/BcrA/BcrD-like
domain: Hypothetical protein PG1100
species: Porphyromonas gingivalis [TaxId: 837]

 Score = 81.2 bits (200), Expect = 3e-19
 Identities = 24/125 (19%), Positives = 39/125 (31%), Gaps = 6/125 (4%)

Query: 148 GCVLIAGTGTIAYGFTEDGRDARAAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDTM 207
           G   I GTG+ +  F      A  +  G ILGD GSG  +    +     +         
Sbjct: 4   GIACILGTGSNSCLFDGREIKANVSPLGYILGDEGSGAVLGRLFI----GSLLKGQMPEG 59

Query: 208 LTSNILSTLELSSPDELIGWTYVDPSWARIAALVPVVVSCAEAGDEVANKILQDSVEELA 267
           L    L    L+S D +    Y  P +                       ++Q+S ++  
Sbjct: 60  LCEAFLQEYGLTSADIIE-SVYRKP-FPNRFLAGFSPFIAQHLDIPAVYSLVQNSFDDFL 117

Query: 268 LSVKA 272
           +    
Sbjct: 118 VRNVL 122

>d2ch5a2 c.55.1.5 (A:1-117) N-acetylglucosamine kinase, NAGK {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: BadF/BadG/BcrA/BcrD-like
domain: N-acetylglucosamine kinase, NAGK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.1 bits (184), Expect = 2e-17
 Identities = 29/123 (23%), Positives = 58/123 (47%), Gaps = 11/123 (8%)

Query: 22  EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVM 81
            +  G++GG T +  +          + +   +LA A    +NH  +G D   E I +++
Sbjct: 3   AIYGGVEGGGTRSEVLL---------VSEDGKILAEADGLSTNHWLIGTDKCVERINEMV 53

Query: 82  ADALLKSGSNRSA-VRAVCLAVSGVNHPTDQQRILNWLRDIFPG-NVRLYVHNDALAALA 139
             A  K+G +    +R++ L++SG +     + ++  LRD FP  +    +  DA  ++A
Sbjct: 54  NRAKRKAGVDPLVPLRSLGLSLSGGDQEDAGRILIEELRDRFPYLSESYLITTDAAGSIA 113

Query: 140 SGT 142
           + T
Sbjct: 114 TAT 116

>d1zbsa2 c.55.1.5 (A:1-107) Hypothetical protein PG1100 {Porphyromonas gingivalis [TaxId: 837]} Length = 107

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: BadF/BadG/BcrA/BcrD-like
domain: Hypothetical protein PG1100
species: Porphyromonas gingivalis [TaxId: 837]

 Score = 57.6 bits (139), Expect = 2e-11
 Identities = 23/117 (19%), Positives = 36/117 (30%), Gaps = 14/117 (11%)

Query: 24  ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMAD 83
           IL  D G+T T                    L R      N      +     +   +  
Sbjct: 2   ILIGDSGSTKTDWCIA----------KEGKSLGRFQTSGINPFQQDRNEIDTALRSEVLP 51

Query: 84  ALLKSGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALAS 140
           A+ +     S++RAV    +G   P     +   L  + P   R+ V  D L A  +
Sbjct: 52  AIGQ---KASSIRAVYFYGAGCT-PAKAPMLNEALDSMLPHCDRIEVAGDMLGAARA 104

>d1zc6a1 c.55.1.5 (A:8-121) Probable N-acetylglucosamine kinase CV2896 {Chromobacterium violaceum [TaxId: 536]} Length = 114

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: BadF/BadG/BcrA/BcrD-like
domain: Probable N-acetylglucosamine kinase CV2896
species: Chromobacterium violaceum [TaxId: 536]

 Score = 48.9 bits (116), Expect = 3e-08
 Identities = 24/118 (20%), Positives = 44/118 (37%), Gaps = 16/118 (13%)

Query: 24  ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMAD 83
           ++G+DGG T T      + +   +       LA A  G S  +      + + +   +  
Sbjct: 6   LIGVDGGGTGTRIR---LHASDGT------PLAMAEGGASALSQGIAK-SWQAVLSTLEA 55

Query: 84  ALLKSGSNRSAVRA--VCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALA 139
           A  ++G   +   A  + L +SGV++        +      PG  RL +  D    L 
Sbjct: 56  AFQQAGLPAAPASACAIGLGLSGVHNRQWAGEFESQA----PGFARLSLATDGYTTLL 109

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	319
d2ch5a1	227	N-acetylglucosamine kinase, NAGK {Human (Homo sapi	99.96
d1zc6a2	171	Probable N-acetylglucosamine kinase CV2896 {Chromo	99.92
d1zbsa1	176	Hypothetical protein PG1100 {Porphyromonas gingiva	99.85
d1sz2a1	319	Glucokinase Glk {Escherichia coli [TaxId: 562]}	99.83
d2ap1a2	117	Putative regulator protein YcfX {Salmonella typhim	99.81
d1zc6a1	114	Probable N-acetylglucosamine kinase CV2896 {Chromo	99.8
d1zxoa2	174	Hypothetical protein BT3618 {Bacteroides thetaiota	99.8
d2ch5a2	117	N-acetylglucosamine kinase, NAGK {Human (Homo sapi	99.79
d2hoea3	128	N-acetylglucosamine kinase {Thermotoga maritima [T	99.78
d2aa4a1	119	N-acetylmannosamine kinase NanK {Escherichia coli	99.75
d1z05a2	197	Transcriptional regulator VC2007 {Vibrio cholerae	99.73
d1z05a3	128	Transcriptional regulator VC2007 {Vibrio cholerae	99.73
d1woqa1	129	Inorganic polyphosphate/ATP-glucomannokinase PPGMK	99.71
d1z6ra3	196	Mlc protein {Escherichia coli [TaxId: 562]}	99.7
d2gupa2	175	Hypothetical protein SP2142 {Streptococcus pneumon	99.69
d2gupa1	114	Hypothetical protein SP2142 {Streptococcus pneumon	99.67
d2aa4a2	170	N-acetylmannosamine kinase NanK {Escherichia coli	99.67
d1z6ra2	129	Mlc protein {Escherichia coli [TaxId: 562]}	99.67
d2ap1a1	186	Putative regulator protein YcfX {Salmonella typhim	99.67
d1xc3a1	118	Putative fructokinase YhdR {Bacillus subtilis [Tax	99.66
d1huxa_	259	Hydroxyglutaryl-CoA dehydratase component A {Acida	99.63
d2hoea2	169	N-acetylglucosamine kinase {Thermotoga maritima [T	99.62
d2ewsa1	267	Type II pantothenate kinase, CoaW {Staphylococcus	99.49
d1q18a1	110	Glucokinase Glk {Escherichia coli [TaxId: 562]}	99.49
d1xc3a2	176	Putative fructokinase YhdR {Bacillus subtilis [Tax	99.45
d1zbsa2	107	Hypothetical protein PG1100 {Porphyromonas gingiva	99.42
d1woqa2	124	Inorganic polyphosphate/ATP-glucomannokinase PPGMK	99.24
d2p3ra1	252	Glycerol kinase {Escherichia coli [TaxId: 562]}	98.33
d1zxoa1	104	Hypothetical protein BT3618 {Bacteroides thetaiota	98.05
d1r59o1	252	Glycerol kinase {Enterococcus casseliflavus [TaxId	97.79
d1bdga1	208	Hexokinase {Blood fluke (Schistosoma mansoni) [Tax	97.56
d1czan3	205	Mammalian type I hexokinase {Human (Homo sapiens)	97.49
d1czan1	207	Mammalian type I hexokinase {Human (Homo sapiens)	97.33
d1v4sa1	205	Glucokinase {Human (Homo sapiens) [TaxId: 9606]}	97.28
d3bzka5	149	Transcriptional accessory factor Tex {Pseudomonas	97.26
d1ig8a1	207	Hexokinase {Baker's yeast (Saccharomyces cerevisia	97.17
d1g99a2	201	Acetate kinase {Archaeon Methanosarcina thermophil	96.77
d2e1za2	205	Propionate kinase {Salmonella typhimurium [TaxId:	96.32
d1saza2	203	butyrate kinase 2 {Thermotoga maritima [TaxId: 233	96.02
d3bexa1	118	Type III pantothenate kinase, CoaX {Thermotoga mar	94.57
d1nu0a_	138	Hypothetical protein YqgF (RuvX) {Escherichia coli	94.28
d1okja1	106	Hypothetical protein YeaZ {Escherichia coli [TaxId	93.49
d1e4ft1	193	Cell division protein FtsA {Thermotoga maritima [T	93.18
d2d0oa2	241	Diol dehydratase-reactivating factor large subunit	93.08
d1vhxa_	140	Hypothetical protein YrrK (RuvX) {Bacillus subtili	91.97
d1iv0a_	98	Hypothetical protein, YqgF homologue {Thermus ther	90.97
d1t6ca1	126	Exopolyphosphatase Ppx {Aquifex aeolicus [TaxId: 6	89.55
d1nbwa2	239	ATPase domain of the glycerol dehydratase reactiva	89.5
d2f9wa2	114	Type III pantothenate kinase, CoaX {Pseudomonas ae	88.93
d1saza1	172	butyrate kinase 2 {Thermotoga maritima [TaxId: 233	88.08
d1jcea1	137	Prokaryotic actin homolog MreB {Thermotoga maritim	87.23

>d2ch5a1 c.55.1.5 (A:118-344) N-acetylglucosamine kinase, NAGK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: BadF/BadG/BcrA/BcrD-like
domain: N-acetylglucosamine kinase, NAGK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=3.5e-28  Score=213.71  Aligned_cols=164  Identities=24%  Similarity=0.324  Sum_probs=142.2

Q ss_pred             CCeEEEEECccceeEeEecCCcEEeeCCCCCccCCcCChHHHHHHHHHHHHHHhcCCCCCc----hhHHHHHHHcCCCCh
Q 020972          146 LHGCVLIAGTGTIAYGFTEDGRDARAAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDT----MLTSNILSTLELSSP  221 (319)
Q Consensus       146 ~~~v~v~~GTGigg~gii~dG~~~raGg~Ghl~gd~Gsa~~iG~~~~~~~~~~~dg~~~~~----~l~~~~~~~~~~~~~  221 (319)
                      +.+++|++|||++++|+..||+..|+|||||++||+||++||||++++...+..||+.+.+    .+.+.+.+.++..+.
T Consensus         1 ~~Givvi~GTGsi~~g~~~~G~~~r~GGwG~~lGD~Gsg~~iG~~al~~~~~~~DG~~~~~~~~~~l~~~~~~~~~~~~~   80 (227)
T d2ch5a1           1 DGGVVLISGTGSNCRLINPDGSESGCGGWGHMMGDEGSAYWIAHQAVKIVFDSIDNLEAAPHDIGYVKQAMFHYFQVPDR   80 (227)
T ss_dssp             SCEEEEEESSSEEEEEECTTSCEEEEECCCTTTCCTTSHHHHHHHHHHHHHHHHHTSSCCSSCCHHHHHHHHHHHTCSSH
T ss_pred             CCCEEEEccCChhhEEEeCCCCEEecCCccccCCCCCcHhHHHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCH
Confidence            3689999999988889999999999999999999999999999999999999999988765    567777778887777


Q ss_pred             hhHHHHhccCCChHHHhchhHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhcccccccEEEEcc
Q 020972          222 DELIGWTYVDPSWARIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEGVTYTKILKEKVPLLMENI  301 (319)
Q Consensus       222 ~~l~~~~~~~~~~~~~a~~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~la~li~~l~~~~~~~~~~~~~~~~~~ivl~Gg  301 (319)
                      ..++...+...++.+++.+++.|+++|++||+.|++|+++++++|++.+.++++.+||.-      ...+++.+||++||
T Consensus        81 ~~~~~~~~~~~~~~~iA~la~~V~~aA~~GD~~A~~Il~~aa~~La~~i~~~~~~l~~~~------~~~~~~~~Vvl~Gg  154 (227)
T d2ch5a1          81 LGILTHLYRDFDKCRFAGFCRKIAEGAQQGDPLSRYIFRKAGEMLGRHIVAVLPEIDPVL------FQGKIGLPILCVGS  154 (227)
T ss_dssp             HHHHTTTTTTCCHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHGGGSCGGG------GCSTTCEEEEEESG
T ss_pred             HHHHHHHHhcccHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhcCchh------hccccCCCeEEech
Confidence            777777765556677888999999999999999999999999999999999999999821      11235678999999


Q ss_pred             hhhhcHHHHHHHHhh
Q 020972          302 LFLLSWLVVFLKLIE  316 (319)
Q Consensus       302 ~~~~~~~~~~~~~~~  316 (319)
                      ++ ++++.+.+++++
T Consensus       155 v~-~~~~~l~~~~~~  168 (227)
T d2ch5a1         155 VW-KSWELLKEGFLL  168 (227)
T ss_dssp             GG-GGHHHHHHHHHH
T ss_pred             Hh-hcchHHHHHHHH
Confidence            99 899998887765

>d1zc6a2 c.55.1.5 (A:122-292) Probable N-acetylglucosamine kinase CV2896 {Chromobacterium violaceum [TaxId: 536]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: BadF/BadG/BcrA/BcrD-like
domain: Probable N-acetylglucosamine kinase CV2896
species: Chromobacterium violaceum [TaxId: 536]

Probab=99.92  E-value=5.7e-25  Score=184.70  Aligned_cols=143  Identities=26%  Similarity=0.313  Sum_probs=123.6

Q ss_pred             CCeEEEEECccceeEeEecCCcEEeeCCCCCccCCcCChHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHcCCCChhhHH
Q 020972          146 LHGCVLIAGTGTIAYGFTEDGRDARAAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELI  225 (319)
Q Consensus       146 ~~~v~v~~GTGigg~gii~dG~~~raGg~Ghl~gd~Gsa~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~~~~~l~  225 (319)
                      ++++++++|||++++++..+|+..|+|||||++||+||++|||+++++..++..|++.+.+.|.+.++++++. +...++
T Consensus         1 ~pGivviaGTGSi~~~~~~~g~~~r~GGwG~~lGD~GSg~wiG~~al~~~l~~~Dg~~~~t~L~~~~~~~~~~-~~~~~~   79 (171)
T d1zc6a2           1 QPGIIVALGTGSIGEALYPDGSHREAGGWGYPSGDEASGAWLGQRAAQLTQMALDGRHSHSPLTRAVLDFVGG-DWQAMM   79 (171)
T ss_dssp             SSEEEEEESSSEEEEEECTTSCEEEESCCCTTTSCTTSHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHTS-SHHHHH
T ss_pred             CCeEEEEecCCceeEEECCCCCEEEcCCCCcccCCCccHHHHHHHHHHHHHHHHHCCCCCcHHHHHHHHhcCC-CHHHHH
Confidence            4789999999999999988999999999999999999999999999999999999999999999999999985 556666


Q ss_pred             HHhccCCChHHHhchhHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhcccccccEEEEcchhhh
Q 020972          226 GWTYVDPSWARIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEGVTYTKILKEKVPLLMENILFLL  305 (319)
Q Consensus       226 ~~~~~~~~~~~~a~~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~la~li~~l~~~~~~~~~~~~~~~~~~ivl~Gg~~~~  305 (319)
                      .+.+. .++..++++++.|++++ +||+.|++|+++++++|+..+..+.    .           +++.++++.||++ .
T Consensus        80 ~~~~~-~~~~~iA~la~~V~~aa-~gD~~A~~Il~~a~~~l~~~~~~~~----~-----------~~~~~v~l~Ggl~-~  141 (171)
T d1zc6a2          80 AWNGR-ATPAQFARLAPLVLSAA-RVDPEADALLRQAGEDAWAIARALD----P-----------QDELPVALCGGLG-Q  141 (171)
T ss_dssp             HHHHT-CCHHHHHTTHHHHHHHT-TTCHHHHHHHHHHHHHHHHHHHHHC----T-----------TCCSCEEEESHHH-H
T ss_pred             HHHhc-CCHHHHHHhhHHHHHHh-cCCHHHHHHHHHHHHHHHHHHHHhc----c-----------cCCceEEEECchH-H
Confidence            66664 45678999999999876 6999999999999999988765443    2           1345899999998 4


Q ss_pred             cH
Q 020972          306 SW  307 (319)
Q Consensus       306 ~~  307 (319)
                      .+
T Consensus       142 ~~  143 (171)
T d1zc6a2         142 AL  143 (171)
T ss_dssp             HT
T ss_pred             HH
Confidence            43

>d1zbsa1 c.55.1.5 (A:108-283) Hypothetical protein PG1100 {Porphyromonas gingivalis [TaxId: 837]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: BadF/BadG/BcrA/BcrD-like
domain: Hypothetical protein PG1100
species: Porphyromonas gingivalis [TaxId: 837]

Probab=99.85  E-value=3.3e-21  Score=162.34  Aligned_cols=149  Identities=20%  Similarity=0.234  Sum_probs=113.0

Q ss_pred             CCeEEEEECccceeEeEecCCcEEeeCCCCCccCCcCChHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHcCCCChhhHH
Q 020972          146 LHGCVLIAGTGTIAYGFTEDGRDARAAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELI  225 (319)
Q Consensus       146 ~~~v~v~~GTGigg~gii~dG~~~raGg~Ghl~gd~Gsa~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~~~~~l~  225 (319)
                      ++++++++|||++++++..+|+..|+|||||++||+||++|||++++++..+.    .+.+.|.+.+++.++.+....+.
T Consensus         2 ~~Gi~~i~GTGSi~~~~~~~g~~~r~gGwG~llGDeGSG~wiG~~al~~~~~~----~~~~~L~~~~~~~~~~~~~~~i~   77 (176)
T d1zbsa1           2 SEGIACILGTGSNSCLFDGREIKANVSPLGYILGDEGSGAVLGRLFIGSLLKG----QMPEGLCEAFLQEYGLTSADIIE   77 (176)
T ss_dssp             SCEEEEEESSSEEEEEECSSSEEEECCCCHHHHCCTTSHHHHHHHHHHHHHTT----CSCTTHHHHHHHHTTCCHHHHHH
T ss_pred             CCcEEEEecCChheEEECCCCcEEEeCCCCccccCcccHHHHHHHHHHHHHHh----cccchHHHHHHHHhCCCchHHHH
Confidence            58999999999999988778889999999999999999999999999876543    45678999999999864433333


Q ss_pred             HHhccCCChHHHhchhHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhcccccccEEEEcchhhh
Q 020972          226 GWTYVDPSWARIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEGVTYTKILKEKVPLLMENILFLL  305 (319)
Q Consensus       226 ~~~~~~~~~~~~a~~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~la~li~~l~~~~~~~~~~~~~~~~~~ivl~Gg~~~~  305 (319)
                      ...+....+..++++++.|++  .++|+.|.+|+++++.+|...+   ...+..            .+.++++.||++ .
T Consensus        78 ~~~~~~~~~~~~A~~A~~v~~--~~~d~~a~~Ii~~aa~el~~~~---~~~~~~------------~~~pv~l~Ggv~-~  139 (176)
T d1zbsa1          78 SVYRKPFPNRFLAGFSPFIAQ--HLDIPAVYSLVQNSFDDFLVRN---VLRYNR------------PDLPLHFIGSVA-F  139 (176)
T ss_dssp             HHHHSSCHHHHHHTTHHHHHT--TTTSHHHHHHHHHHHHHHHHHH---TGGGCC------------TTSCEEEESHHH-H
T ss_pred             HHHHcCCCchHHHhhchhhHH--hcCCHHHHHHHHHHHHHHHHHH---HHhccc------------CCCeEEEECcHH-H
Confidence            333322234567888988876  4799999999999999986543   223322            236899999998 5


Q ss_pred             cHHHHHHHHhh
Q 020972          306 SWLVVFLKLIE  316 (319)
Q Consensus       306 ~~~~~~~~~~~  316 (319)
                      ..+.++.++.+
T Consensus       140 ~~~~~l~~~l~  150 (176)
T d1zbsa1         140 HYREVLSSVIK  150 (176)
T ss_dssp             HTHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            55555554443

>d1sz2a1 c.55.1.7 (A:3-321) Glucokinase Glk {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Glucokinase
domain: Glucokinase Glk
species: Escherichia coli [TaxId: 562]

Probab=99.83  E-value=2e-20  Score=170.38  Aligned_cols=242  Identities=12%  Similarity=-0.051  Sum_probs=146.4

Q ss_pred             cEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceEEEe
Q 020972           22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLA  101 (319)
Q Consensus        22 ~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Igig  101 (319)
                      +|+|++|+|||++|++++|.         ++..+.+.+..++.    +.+.    +.+.+++++++++.   ++.+||||
T Consensus         1 ~y~L~~DIGGT~ir~glvd~---------~~~~i~~~~~~~~~----~~~~----~~~~i~~~~~~~~~---~~~~igI~   60 (319)
T d1sz2a1           1 KYALVGDVGGTNARLALCDI---------ASGEISQAKTYSGL----DYPS----LEAVIRVYLEEHKV---EVKDGCIA   60 (319)
T ss_dssp             CEEEEEEEETTEEEEEEEET---------TTCCEEEEEEEEGG----GCSC----HHHHHHHHHHHSCC---CCCEEEEE
T ss_pred             CEEEEEEEChhheeeEEEEC---------CCCEEEEEEEeCCC----CHhH----HHHHHHHHHHhcCC---CcceEEEE
Confidence            59999999999999999998         65555544433322    1122    34455666766643   68899999


Q ss_pred             ecCCCCchh--------HHHHHHHHHhhCCCCceEEEeCcHHHHHHhhc-------------CCCCCeEEEEECccceeE
Q 020972          102 VSGVNHPTD--------QQRILNWLRDIFPGNVRLYVHNDALAALASGT-------------MGKLHGCVLIAGTGTIAY  160 (319)
Q Consensus       102 ~pG~~~~~~--------~~~l~~~L~~~~~~~~pv~v~NDa~aa~~g~~-------------~g~~~~v~v~~GTGigg~  160 (319)
                      +||+++.+.        ..+....++..+.  .++.++||.+++.+.+.             .+..+.+++++|||+++ 
T Consensus        61 ~pG~vd~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~g~G~-  137 (319)
T d1sz2a1          61 IACPITGDWVAMTNHTWAFSIAEMKKNLGF--SHLEIINDFTAVSMAIPMLKKEHLIQFGGAEPVEGKPIAVYGAGTGL-  137 (319)
T ss_dssp             ESSCCCSSEECCSSSCCCEEHHHHHHHHTC--SEEEEEEHHHHHHHHGGGCCGGGEEECSSCCCCTTCCEEEEEESSSE-
T ss_pred             cccCCCCCcccccccccccChHHHHHhhcc--cceeecceeeeeehhhhhhhhhhHHhhCcccCCCcceEEEEcccccc-
Confidence            999988643        2245566666665  79999999998776421             24456677777777644 


Q ss_pred             eEecCCc-----EEeeCCCCCccCCcCChHHH-HHHHHHHHHHHhcCCCCCchhHHHHHHHcCCCChhhHHHHhc----c
Q 020972          161 GFTEDGR-----DARAAGAGPILGDWGSGYGI-AAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTY----V  230 (319)
Q Consensus       161 gii~dG~-----~~raGg~Ghl~gd~Gsa~~i-G~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~~~~~l~~~~~----~  230 (319)
                      |++.+++     ...+|++||+.......... ....+.     ..+.. .|     ++..+   +...+.+...    .
T Consensus       138 g~~~~~~~~~g~~~~agE~G~~~~~~~~~~~~~~~~~~~-----~~g~~-g~-----~E~~~---Sg~~l~~~~~~~~~~  203 (319)
T d1sz2a1         138 GVAHLVHVDKRWVSLPGEGGHVDFAPNSEEEAIILEILR-----AEIGH-VS-----AERVL---SGPGLVNLYRAIVKA  203 (319)
T ss_dssp             EEEEEEEETTEEEEEECCGGGSBCCCCSHHHHHHHHHHH-----HHSSS-CB-----GGGTS---SHHHHHHHHHHHHHH
T ss_pred             eEEEEecccCCcccccccccccccCCcchhhccchhhhh-----hcCCc-ce-----eeeec---cchhHHHHHHHHHhh
Confidence            4444444     45689999987654332221 111110     01100 00     00110   1112211110    0


Q ss_pred             CCChHHHhchhHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhcccccccEEEEcchhhhcHHHH
Q 020972          231 DPSWARIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEGVTYTKILKEKVPLLMENILFLLSWLVV  310 (319)
Q Consensus       231 ~~~~~~~a~~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~la~li~~l~~~~~~~~~~~~~~~~~~ivl~Gg~~~~~~~~~  310 (319)
                      .............+.+.+.++|+.+.++++++..++...+.+.+..+.+             +..+|++||++....+.+
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~ivigGG~~~~~~~~~  270 (319)
T d1sz2a1         204 DNRLPENLKPKDITERALADSCTDCRRALSLFCVIMGRFGGNLALNLGT-------------FGGVFIAGGIVPRFLEFF  270 (319)
T ss_dssp             TTCCCCCCCHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHTC-------------TTEEEEECSSSGGGHHHH
T ss_pred             cCCCchhccchHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhheecC-------------CCCcEEecchhhhhhhhh
Confidence            0000000011234556677899999999999999999999988877776             235899999986666666


Q ss_pred             HHH
Q 020972          311 FLK  313 (319)
Q Consensus       311 ~~~  313 (319)
                      ..+
T Consensus       271 ~~~  273 (319)
T d1sz2a1         271 KAS  273 (319)
T ss_dssp             HHS
T ss_pred             chH
Confidence            543

>d2ap1a2 c.55.1.10 (A:1-117) Putative regulator protein YcfX {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: Putative regulator protein YcfX
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.81  E-value=5.1e-20  Score=144.27  Aligned_cols=104  Identities=14%  Similarity=0.114  Sum_probs=89.6

Q ss_pred             EEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceEEEee
Q 020972           23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV  102 (319)
Q Consensus        23 ~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Igig~  102 (319)
                      +|||||+|||+++++++|.         +|+++.+.+.++..   .+++.+++.|.++++++..+.+    .+.+||+|+
T Consensus         1 MyiGiDiGgT~i~~~l~d~---------~g~i~~~~~~~t~~---~~~~~~~~~i~~~i~~~~~~~~----~~~~igi~~   64 (117)
T d2ap1a2           1 MYYGFDIGGTKIALGVFDS---------TRRLQWEKRVPTPH---TSYSAFLDAVCELVEEADQRFG----VKGSVGIGI   64 (117)
T ss_dssp             EEEEEEECSSEEEEEEEET---------TCCEEEEEEEECCC---SCHHHHHHHHHHHHHHHHHHHT----SCCEEEEEE
T ss_pred             CEEEEEECcceEEEEEEeC---------CCCEEEEEEEeecc---cCHHHHHHHHHHHHHHHHhhcC----cceeEEEec
Confidence            4799999999999999999         99999998876422   4788999999999999988764    457899999


Q ss_pred             cCCCCchh------------HHHHHHHHHhhCCCCceEEEeCcHHHHHHhhcCC
Q 020972          103 SGVNHPTD------------QQRILNWLRDIFPGNVRLYVHNDALAALASGTMG  144 (319)
Q Consensus       103 pG~~~~~~------------~~~l~~~L~~~~~~~~pv~v~NDa~aa~~g~~~g  144 (319)
                      ||+++++.            +++|++.|+++|+  +||+++||+|++++||..+
T Consensus        65 pG~vd~~~g~i~~~~~~~w~~~~l~~~l~~~~~--~pv~l~NDan~aalaE~w~  116 (117)
T d2ap1a2          65 PGMPETEDGTLYAANVPAASGKPLRADLSARLD--RDVRLDNDANCFALSEAWD  116 (117)
T ss_dssp             SSBSCCTTSCCBCTTCTTTTTSCHHHHHHHHHT--SCEEEEEHHHHHHHHHHTS
T ss_pred             CCccccccceeeccCccccCCCcHHHHHHHHhC--CCEEEEeHHHhhHhhcccc
Confidence            99987653            3689999999997  9999999999999998653

>d1zc6a1 c.55.1.5 (A:8-121) Probable N-acetylglucosamine kinase CV2896 {Chromobacterium violaceum [TaxId: 536]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: BadF/BadG/BcrA/BcrD-like
domain: Probable N-acetylglucosamine kinase CV2896
species: Chromobacterium violaceum [TaxId: 536]

Probab=99.80  E-value=3.5e-19  Score=138.92  Aligned_cols=110  Identities=21%  Similarity=0.214  Sum_probs=91.1

Q ss_pred             CCCcEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCcccc--c
Q 020972           19 GGREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAV--R   96 (319)
Q Consensus        19 ~m~~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i--~   96 (319)
                      |+|+|+||||+||||||++|+|.         +|+++.+.+.++.+.. .+++++++++.+.+++++++++....++  .
T Consensus         1 psm~y~lGID~GGT~tk~~l~d~---------~G~il~~~~~~~~~~~-~~~~~~~~~i~~~i~~~~~~ag~~~~~~~~~   70 (114)
T d1zc6a1           1 PSIRYLIGVDGGGTGTRIRLHAS---------DGTPLAMAEGGASALS-QGIAKSWQAVLSTLEAAFQQAGLPAAPASAC   70 (114)
T ss_dssp             CCCCEEEEEEECSSCEEEEEEET---------TCCEEEEEEESCCCGG-GCHHHHHHHHHHHHHHHHHHTTCCCCCGGGE
T ss_pred             CCccEEEEEEcCcceEEEEEEcC---------CCCEEEEEEccCCCcc-cCHHHHHHHHHHHHHHHHHHcCCChhhhcee
Confidence            56789999999999999999999         9999999887777764 7899999999999999999998877655  4


Q ss_pred             eEEEeecCCCCchhHHHHHHHHHhhC-CCCceEEEeCcHHHHHHhhcC
Q 020972           97 AVCLAVSGVNHPTDQQRILNWLRDIF-PGNVRLYVHNDALAALASGTM  143 (319)
Q Consensus        97 ~Igig~pG~~~~~~~~~l~~~L~~~~-~~~~pv~v~NDa~aa~~g~~~  143 (319)
                      .+++|+||..+++....    |.+.+ +. .||+|+||+++|+++++.
T Consensus        71 ~~~~g~aG~~~~~~~~~----l~~~~~~~-~~v~v~nDa~~A~~ga~~  113 (114)
T d1zc6a1          71 AIGLGLSGVHNRQWAGE----FESQAPGF-ARLSLATDGYTTLLGAHG  113 (114)
T ss_dssp             EEEEEESCCCTTSHHHH----HHHTCCCC-SEEEEECHHHHHHHHHTT
T ss_pred             EEEEEecCCCcHHHHHH----HHHhCCCC-CeEEEECHHHHHHHHhcC
Confidence            67889999987754433    33343 32 599999999999998653

>d1zxoa2 c.55.1.5 (A:107-280) Hypothetical protein BT3618 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: BadF/BadG/BcrA/BcrD-like
domain: Hypothetical protein BT3618
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=99.80  E-value=3.2e-20  Score=155.79  Aligned_cols=145  Identities=18%  Similarity=0.270  Sum_probs=110.1

Q ss_pred             CCeEEEEECccceeEeEecCCcEEeeCCCCCccCCcCChHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHcCCCChhhHH
Q 020972          146 LHGCVLIAGTGTIAYGFTEDGRDARAAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELI  225 (319)
Q Consensus       146 ~~~v~v~~GTGigg~gii~dG~~~raGg~Ghl~gd~Gsa~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~~~~~l~  225 (319)
                      +.++++++|||++++++..+|+..|+|||||++||+||++|||+++++...+..    ....+.+.++++++.+. +.++
T Consensus         1 k~Giv~I~GTGS~~~~~~~~g~~~r~gG~G~~lGDeGSg~~iG~~al~~~~~~~----~~~~l~~~l~~~~~~~~-~~~i   75 (174)
T d1zxoa2           1 KAGIACILGTGSNSCFYNGKEIVSNISPLGFILGDEGSGAVLGKLLVGDILKNQ----LPATLKEEFLKQFDLTP-PEII   75 (174)
T ss_dssp             SCBEEEEESSSEEEEEECSSSEEEECCCCCTTTSCCSSHHHHHHHHHHHGGGTC----SCSHHHHHHHHHHTCCH-HHHG
T ss_pred             CCeEEEEecCchheeEECCCCcEEEeCCCCccCCCCchHHHHHHHHHHHHHHhh----CCchHHHHHHHHHCCCh-HHHH
Confidence            368999999999998887788899999999999999999999999998765543    34678888999998644 4455


Q ss_pred             HHhccCC-ChHHHhchhHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhcccccccEEEEcchhh
Q 020972          226 GWTYVDP-SWARIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEGVTYTKILKEKVPLLMENILFL  304 (319)
Q Consensus       226 ~~~~~~~-~~~~~a~~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~la~li~~l~~~~~~~~~~~~~~~~~~ivl~Gg~~~  304 (319)
                      ..++.++ ....+|++++.|+++  ++|+.|.+|++++++++...   ++..++.            .+.+|.+.||++ 
T Consensus        76 ~~~~~~~~~~~~iA~~A~~v~~~--~~d~~a~~ii~~~~~~l~~~---~~~~~~~------------~~~~v~~vGsva-  137 (174)
T d1zxoa2          76 DRVYRQPFPNRFLASLSPFIAQH--LEEPAIRQLVMNSFIAFFRR---NVMQYDY------------KQYPVHFIGSIA-  137 (174)
T ss_dssp             GGTTTSSCSTTTSSTTTHHHHTT--TTSTTTTHHHHHHHHHHHTT---TGGGSCT------------TTSCEEECSHHH-
T ss_pred             HHHHhCCCccHHHHhhchHHHHc--CCCHHHHHHHHHHHHHHHHH---HHHhcCC------------CCceEEEEccHH-
Confidence            5544433 345678899999874  68999999999998888653   2333432            346899999998 


Q ss_pred             hcHHHHHHH
Q 020972          305 LSWLVVFLK  313 (319)
Q Consensus       305 ~~~~~~~~~  313 (319)
                      .....++..
T Consensus       138 ~~~~~~l~~  146 (174)
T d1zxoa2         138 YCYKEILQD  146 (174)
T ss_dssp             HHTHHHHHH
T ss_pred             HHHHHHHHH
Confidence            443333333

>d2ch5a2 c.55.1.5 (A:1-117) N-acetylglucosamine kinase, NAGK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: BadF/BadG/BcrA/BcrD-like
domain: N-acetylglucosamine kinase, NAGK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=6.8e-19  Score=138.17  Aligned_cols=113  Identities=25%  Similarity=0.363  Sum_probs=101.1

Q ss_pred             CCcEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCc-cccceE
Q 020972           20 GREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNR-SAVRAV   98 (319)
Q Consensus        20 m~~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~-~~i~~I   98 (319)
                      |+.+++|||.|||||+++|+|.         +|+++.+.+.++.|+...+.+++.++|.+++++++++++.+. .++..+
T Consensus         1 m~~~~~GIDgGGTkT~~~l~d~---------~G~~l~~~~~g~~N~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~~i~~i   71 (117)
T d2ch5a2           1 MAAIYGGVEGGGTRSEVLLVSE---------DGKILAEADGLSTNHWLIGTDKCVERINEMVNRAKRKAGVDPLVPLRSL   71 (117)
T ss_dssp             SSCEEEEEEECTTCEEEEEEET---------TSCEEEEEEECCCCHHHHCHHHHHHHHHHHHHHHHHHHTCCTTCCBSEE
T ss_pred             CCcEEEEEEcChhhEEEEEECC---------CCCEEEEEEcCCCCcchhhHHHHHHHHHHHHHHHHHHhcCCCCccccEE
Confidence            7889999999999999999999         999999999989898767999999999999999999988754 378999


Q ss_pred             EEeecCCCCchhHHHHHHHHHhhCCC-CceEEEeCcHHHHHHhh
Q 020972           99 CLAVSGVNHPTDQQRILNWLRDIFPG-NVRLYVHNDALAALASG  141 (319)
Q Consensus        99 gig~pG~~~~~~~~~l~~~L~~~~~~-~~pv~v~NDa~aa~~g~  141 (319)
                      ++|++|.+++.....|.+.|++.|++ ..+++|+||+.+|++++
T Consensus        72 ~~GlAG~~~~~~~~~l~~~l~~~~~~~~~~v~v~nDa~~Al~~a  115 (117)
T d2ch5a2          72 GLSLSGGDQEDAGRILIEELRDRFPYLSESYLITTDAAGSIATA  115 (117)
T ss_dssp             EEEETTTTCHHHHHHHHHHHHHHCTTSBSCEEEEEHHHHHHHHH
T ss_pred             EEEeeccCcchhHHHHHHHHHHHCCCCCceEEEeccHHHHHhhc
Confidence            99999998888888899999999874 13699999999988764

>d2hoea3 c.55.1.10 (A:72-199) N-acetylglucosamine kinase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: N-acetylglucosamine kinase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.78  E-value=2.5e-19  Score=142.45  Aligned_cols=114  Identities=16%  Similarity=0.202  Sum_probs=96.9

Q ss_pred             CCCcEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceE
Q 020972           19 GGREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAV   98 (319)
Q Consensus        19 ~m~~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~I   98 (319)
                      |...|+||||+|+|+++++++|.         +|+++.+.+.+.. . ..+++.+++.+.+.++++++..+....++.+|
T Consensus         1 P~~~~~igidig~~~i~~~l~d~---------~G~il~~~~~~~~-~-~~~~~~~~~~i~~~i~~~~~~~~~~~~~i~gi   69 (128)
T d2hoea3           1 PNCAYVLGIEVTRDEIAACLIDA---------SMNILAHEAHPLP-S-QSDREETLNVMYRIIDRAKDMMEKLGSKLSAL   69 (128)
T ss_dssp             GGGCEEEEEEECSSEEEEEEEET---------TCCEEEEEEEECC-S-SCCHHHHHHHHHHHHHHHHHHHHHTTCCCCEE
T ss_pred             CCcEEEEEEEECCCEEEEEEEcC---------CCCEEEEEEEecc-c-CCCHHHHHHHHHHHHHHHHHHhccccCceEEE
Confidence            44579999999999999999999         9999998876543 2 25788899999999999988877777789999


Q ss_pred             EEeecCCCCchh------------HHHHHHHHHhhCCCCceEEEeCcHHHHHHhhc-CCC
Q 020972           99 CLAVSGVNHPTD------------QQRILNWLRDIFPGNVRLYVHNDALAALASGT-MGK  145 (319)
Q Consensus        99 gig~pG~~~~~~------------~~~l~~~L~~~~~~~~pv~v~NDa~aa~~g~~-~g~  145 (319)
                      ||++||+++.+.            +.+|.+.|++.|+  +||+++||+|++++||. +|.
T Consensus        70 gi~~pG~vd~~~g~i~~~~~l~w~~~~l~~~l~~~~~--~pv~i~NDa~~~alaE~~fG~  127 (128)
T d2hoea3          70 TVAAPGPIDTERGIIIDPRNFPLSQIPLANLLKEKYG--IEVWVENDADMGAVGEKWYTK  127 (128)
T ss_dssp             EEEESSCEETTTTEECCCSSCTTBTSCHHHHHHHHHC--SEEEEEEHHHHHHHHHHHHTT
T ss_pred             ecceeeeEcCCCCEEEeeccccccCCchHHHHHHHcC--CCEEEEeHHHHHHHHHHHhcC
Confidence            999999976542            3589999999997  99999999999999984 453

>d2aa4a1 c.55.1.10 (A:1-119) N-acetylmannosamine kinase NanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: N-acetylmannosamine kinase NanK
species: Escherichia coli [TaxId: 562]

Probab=99.75  E-value=5.9e-19  Score=138.68  Aligned_cols=101  Identities=17%  Similarity=0.163  Sum_probs=81.9

Q ss_pred             EEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceEEEee
Q 020972           23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV  102 (319)
Q Consensus        23 ~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Igig~  102 (319)
                      ++||||+|||+++++++|.         +|+++.+.+.++..  ..+++.+.+.+.++++++.       .++.+|||++
T Consensus         2 ~~lgiDiGgT~i~~~l~d~---------~G~i~~~~~~~~~~--~~~~~~~~~~i~~~i~~~~-------~~~~~igI~~   63 (119)
T d2aa4a1           2 TTLAIDIGGTKLAAALIGA---------DGQIRDRRELPTPA--SQTPEALRDALSALVSPLQ-------AHAQRVAIAS   63 (119)
T ss_dssp             CEEEEEECSSEEEEEEECT---------TCCEEEEEEEECCS--SCCHHHHHHHHHHHHTTTG-------GGCSEEEEEE
T ss_pred             eEEEEEeCcCEEEEEEEcC---------CCCEEEeEEEeccc--cCcHHHHHHHHHHHHHHhh-------ccCceEEEEe
Confidence            4899999999999999999         99999988875432  2467777776666655432       3678999999


Q ss_pred             cCCCCchh-------------HHHHHHHHHhhCCCCceEEEeCcHHHHHHhhcC
Q 020972          103 SGVNHPTD-------------QQRILNWLRDIFPGNVRLYVHNDALAALASGTM  143 (319)
Q Consensus       103 pG~~~~~~-------------~~~l~~~L~~~~~~~~pv~v~NDa~aa~~g~~~  143 (319)
                      ||+++...             +++|++.|+++|+  +||+++||+|++++||++
T Consensus        64 pG~v~~~~~~~~~~~~l~~w~~~~l~~~l~~~~~--~pv~i~NDanaaalgE~~  115 (119)
T d2aa4a1          64 TGIIRDGSLLALNPHNLGGLLHFPLVKTLEQLTN--LPTIAINDAQAAAWAEFQ  115 (119)
T ss_dssp             SSEEETTEEECSSGGGGGGGTTCCHHHHHHHHHC--SCEEEEEHHHHHHHHHHH
T ss_pred             eeeEcCCCcEEEccCccccccCCCHHHHHHHHhC--CCEEEEehHHHHHHHHHH
Confidence            99876431             3689999999998  999999999999999863

>d1z05a2 c.55.1.10 (A:209-405) Transcriptional regulator VC2007 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: Transcriptional regulator VC2007
species: Vibrio cholerae [TaxId: 666]

Probab=99.73  E-value=1.6e-18  Score=147.72  Aligned_cols=140  Identities=14%  Similarity=0.164  Sum_probs=94.5

Q ss_pred             CCCeEEEEECccceeEeEecCCcEEeeCCCCCccCCcCChHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHcCCCChhhH
Q 020972          145 KLHGCVLIAGTGTIAYGFTEDGRDARAAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDEL  224 (319)
Q Consensus       145 ~~~~v~v~~GTGigg~gii~dG~~~raGg~Ghl~gd~Gsa~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~~~~~l  224 (319)
                      .+|++|+++|||+| +|++.||+++|        |.+|.++|+||..+.     .++..|.|+...+++...   +...+
T Consensus         2 ~~n~v~i~igtGiG-~giv~~g~l~~--------G~~g~AGEiGh~~v~-----~~g~~c~cG~~GclE~~~---S~~al   64 (197)
T d1z05a2           2 VDNSVLISIHHGLG-AGIVLDGRVLQ--------GRHGNIGELGHIQID-----PQGKRCHCGNYGCLETVA---SSQAI   64 (197)
T ss_dssp             CSSEEEEEESSSEE-EEEEETTEECC--------TTTTCTTBCTTSBCC-----TTCCBCTTSCBSBTHHHH---SHHHH
T ss_pred             CccEEEEEECCCEE-EEEEECCEEEe--------CCCCCCcccccCccc-----cccccccCCCCCchHHHh---cHHHH
Confidence            47999999999995 58999999998        444444444443331     223333333222333332   22333


Q ss_pred             HHHhcc---C--C-ChHHH-hchhHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhcccccccEE
Q 020972          225 IGWTYV---D--P-SWARI-AALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEGVTYTKILKEKVPLL  297 (319)
Q Consensus       225 ~~~~~~---~--~-~~~~~-a~~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~la~li~~l~~~~~~~~~~~~~~~~~~iv  297 (319)
                      .+.+..   .  . ..... ....+.|++++++||+.|++++++++++|+.++++++++|||              +.||
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~gd~~a~~~~~~~~~~la~~i~nl~~~ldP--------------~~Iv  130 (197)
T d1z05a2          65 RDQVTARIQAGEPSCLATVEEISIEDICAAAADGDPLAVDVIQQLGRYLGAAIAIVINLFNP--------------EKIL  130 (197)
T ss_dssp             HHHHHHHHHTTCCCTTTTCSSCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHCC--------------SEEE
T ss_pred             HHHHHHHHhcCCccccccchhcCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhHHHhcCC--------------CEEE
Confidence            332210   0  0 00000 113578999999999999999999999999999999999998              4899


Q ss_pred             EEcchhhhcHHHHHHHHhh
Q 020972          298 MENILFLLSWLVVFLKLIE  316 (319)
Q Consensus       298 l~Gg~~~~~~~~~~~~~~~  316 (319)
                      |+|++. ..++.|++++.+
T Consensus       131 iGG~~~-~~~~~~~~~i~~  148 (197)
T d1z05a2         131 IGGVIN-QAKSILYPSIEQ  148 (197)
T ss_dssp             EESGGG-GGHHHHHHHHHH
T ss_pred             EecchH-HhhHHHHHHHHH
Confidence            988888 788999888765

>d1z05a3 c.55.1.10 (A:81-208) Transcriptional regulator VC2007 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: Transcriptional regulator VC2007
species: Vibrio cholerae [TaxId: 666]

Probab=99.73  E-value=5.4e-18  Score=134.36  Aligned_cols=108  Identities=10%  Similarity=0.070  Sum_probs=94.2

Q ss_pred             CcEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceEEE
Q 020972           21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCL  100 (319)
Q Consensus        21 ~~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Igi  100 (319)
                      ..++||||+|+|+++++++|.         +|+++.+.+.+.. .  .+++++++.+.+.+++++++.+.+..++.+||+
T Consensus         3 g~~~lgi~ig~~~i~~~l~d~---------~G~il~~~~~~~~-~--~~~~~~~~~i~~~i~~~~~~~~~~~~~i~gIgi   70 (128)
T d1z05a3           3 GWQFLSMRLGRGYLTIALHEL---------GGEVLIDTKIDIH-E--IDQDDVLARLLFEIEEFFQTYAAQLDRVTSIAI   70 (128)
T ss_dssp             TEEEEEEEEETTEEEEEEEET---------TSCEEEEEEEECC-C--CBHHHHHHHHHHHHHHHHHHTTTTCCEEEEEEE
T ss_pred             CCEEEEEEECCCEEEEEEEcC---------CCCEEEEEEeccc-c--CCHHHHHHHHHHHHHHHHHHcccccccceEEEe
Confidence            357999999999999999999         9999998877542 2  467889999999999999999888889999999


Q ss_pred             eecCCCCchh------------HHHHHHHHHhhCCCCceEEEeCcHHHHHHhhc
Q 020972          101 AVSGVNHPTD------------QQRILNWLRDIFPGNVRLYVHNDALAALASGT  142 (319)
Q Consensus       101 g~pG~~~~~~------------~~~l~~~L~~~~~~~~pv~v~NDa~aa~~g~~  142 (319)
                      ++||+++...            ..+|++.|+++|+  +||+++||+|+++++|.
T Consensus        71 ~~pG~vd~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~PV~l~NDana~a~aE~  122 (128)
T d1z05a3          71 TLPGLVNSEQGIVLQMPHYNVKNLALGPEIYKATG--LPVFVANDTRAWALAEK  122 (128)
T ss_dssp             EESSEEETTTTEEEECSSSBCSSBCHHHHHHHHHC--SCEEEEEHHHHHHHHHH
T ss_pred             eeeeeeeccceeeeccccCCCCCcchHHHHHHhcC--CCEEEEehHHHHHHHHH
Confidence            9999976432            3579999999998  99999999999999984

>d1woqa1 c.55.1.10 (A:11-139) Inorganic polyphosphate/ATP-glucomannokinase PPGMK {Arthrobacter sp. KM [TaxId: 184230]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: Inorganic polyphosphate/ATP-glucomannokinase PPGMK
species: Arthrobacter sp. KM [TaxId: 184230]

Probab=99.71  E-value=1.3e-17  Score=132.43  Aligned_cols=108  Identities=18%  Similarity=0.113  Sum_probs=84.1

Q ss_pred             cEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEE-EecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceEEE
Q 020972           22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLAR-AAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCL  100 (319)
Q Consensus        22 ~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~-~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Igi  100 (319)
                      .++||||+|||+++++++|..        .++++.+ .+.++ +. ..+++.+.+.+.+.++++.++.. ...++.+|||
T Consensus         2 ~~vlGiDiGgT~i~~~l~d~~--------~g~i~~~~~~~~t-~~-~~~~~~~~~~i~~~~~~l~~~~~-~~~~~~gIGi   70 (129)
T d1woqa1           2 APLIGIDIGGTGIKGGIVDLK--------KGKLLGERFRVPT-PQ-PATPESVAEAVALVVAELSARPE-APAAGSPVGV   70 (129)
T ss_dssp             CCEEEEEECSSEEEEEEEETT--------TTEEEEEEEEEEC-CS-SCCHHHHHHHHHHHHHHHHTSTT-CCCTTCCEEE
T ss_pred             CCEEEEEECcceEEEEEEECC--------CCEEEEEEeeccc-cc-CCCHHHHHHHHHHHHHHHHhccc-cccccceeee
Confidence            369999999999999999971        3555544 34433 22 25788899999999988765443 3346889999


Q ss_pred             eecCCCCchh------------HHHHHHHHHhhCCCCceEEEeCcHHHHHHhhc
Q 020972          101 AVSGVNHPTD------------QQRILNWLRDIFPGNVRLYVHNDALAALASGT  142 (319)
Q Consensus       101 g~pG~~~~~~------------~~~l~~~L~~~~~~~~pv~v~NDa~aa~~g~~  142 (319)
                      ++||++++..            +++|+++|++.|+  +||+++||+|++++||+
T Consensus        71 ~~pG~vd~~~~~~~~~~~~~w~~~~l~~~l~~~~~--~pv~i~NDan~aalgE~  122 (129)
T d1woqa1          71 TFPGIIQHGVVHSAANVDKSWLNTDIDALLTARLG--RPVEVINDADAAGLAEA  122 (129)
T ss_dssp             EESSCEETTEECCCTTSCGGGTTCBHHHHHHHHHT--SCEEEEEHHHHHHHHHH
T ss_pred             cceeeEecCeEEEecccCCCcccccchhhHHHhcC--CcEEEEEhHHHHHHHHH
Confidence            9999976421            3689999999997  99999999999999985

>d1z6ra3 c.55.1.10 (A:211-406) Mlc protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: Mlc protein
species: Escherichia coli [TaxId: 562]

Probab=99.70  E-value=3.4e-18  Score=145.55  Aligned_cols=141  Identities=14%  Similarity=0.079  Sum_probs=95.8

Q ss_pred             CCCCeEEEEECccceeEeEecCCcEEeeCCCCCccCCcCChHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHcCCCChhh
Q 020972          144 GKLHGCVLIAGTGTIAYGFTEDGRDARAAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDE  223 (319)
Q Consensus       144 g~~~~v~v~~GTGigg~gii~dG~~~raGg~Ghl~gd~Gsa~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~~~~~  223 (319)
                      |.+|++||++|||++ +|++.||++++        |..|.++|+||..+.     .++..|.|.-..+++...   +...
T Consensus         1 G~~n~~~i~ig~GiG-~gii~ng~l~~--------G~~g~aGEiGh~~v~-----~~g~~c~cG~~gcle~~~---s~~a   63 (196)
T d1z6ra3           1 GARDVIQVVIDHNVG-AGVITDGHLLH--------AGSSSLVEIGHTQVD-----PYGKRCYCGNHGCLETIA---SVDS   63 (196)
T ss_dssp             TCSSEEEEEESSSEE-EEEEETTEETT--------TTSSCCBCGGGSBSC-----TTSCBCTTSCBSBTHHHH---SHHH
T ss_pred             CCceEEEEEECCCeE-EEEEECCEEEE--------CCCCCCccccccccc-----cccccccccccchHHHhc---CHHH
Confidence            568999999999994 58999999988        445555555554332     223333333223333332   2223


Q ss_pred             HHHHhcc----CCC-hHH-HhchhHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhcccccccEE
Q 020972          224 LIGWTYV----DPS-WAR-IAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEGVTYTKILKEKVPLL  297 (319)
Q Consensus       224 l~~~~~~----~~~-~~~-~a~~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~la~li~~l~~~~~~~~~~~~~~~~~~iv  297 (319)
                      +.+.+..    ... ... -.-..+.+++++++||+.|.+++++++++|+.++++++++|||              +.||
T Consensus        64 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~gd~~a~~i~~~~~~~la~~i~~l~~~ldP--------------~~Iv  129 (196)
T d1z6ra3          64 ILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNP--------------QKIL  129 (196)
T ss_dssp             HHHHHHHHHTTCTTCGGGSSCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHCC--------------SEEE
T ss_pred             HHHHHHHhhccccchhccCCcCCHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHhCC--------------CEEE
Confidence            3222210    000 000 0012577999999999999999999999999999999999998              4899


Q ss_pred             EEcchhhhcHHHHHHHHhh
Q 020972          298 MENILFLLSWLVVFLKLIE  316 (319)
Q Consensus       298 l~Gg~~~~~~~~~~~~~~~  316 (319)
                      |+|++. ..++.+++.+.+
T Consensus       130 igG~~~-~~~~~~~~~l~~  147 (196)
T d1z6ra3         130 IGSPLS-KAADILFPVISD  147 (196)
T ss_dssp             EESGGG-GGHHHHHHHHHH
T ss_pred             Eecchh-hhhHHHHHHHHH
Confidence            999998 788888888765

>d2gupa2 c.55.1.10 (A:115-289) Hypothetical protein SP2142 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: Hypothetical protein SP2142
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.69  E-value=2.5e-17  Score=137.54  Aligned_cols=131  Identities=11%  Similarity=0.061  Sum_probs=87.9

Q ss_pred             CCeEEEEECccceeEeEecCCcEEeeCCCCCccCCcCChHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHcCCCChhhHH
Q 020972          146 LHGCVLIAGTGTIAYGFTEDGRDARAAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELI  225 (319)
Q Consensus       146 ~~~v~v~~GTGigg~gii~dG~~~raGg~Ghl~gd~Gsa~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~~~~~l~  225 (319)
                      +|+++|++|||+| +|++.||++++        |.+|.++|+||..+.     .++..+.|     ++...   +...+.
T Consensus         2 ~n~~~vtlGtGiG-~giv~ng~l~~--------G~~g~AGEiGh~~v~-----~~~~~~~~-----~e~~~---s~~~l~   59 (175)
T d2gupa2           2 ENAACVVIGTGIG-GAMIINGRLHR--------GRHGLGGEFGYMTTL-----APAEKLNN-----WSQLA---STGNMV   59 (175)
T ss_dssp             SSEEEEEESSSEE-EEEEETTEEEC--------CTTSCTTCGGGCBSS-----CCSSSCCB-----HHHHH---SHHHHH
T ss_pred             ccEEEEEEeccee-EEEEECCEEEE--------CCCCCcceeeeeeec-----cccccccc-----chhhc---cchHHH
Confidence            6899999999995 57999999998        555555555554331     11212222     11111   223333


Q ss_pred             HHhccCCChHHHhchhHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhcccccccEEEEcchhhh
Q 020972          226 GWTYVDPSWARIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEGVTYTKILKEKVPLLMENILFLL  305 (319)
Q Consensus       226 ~~~~~~~~~~~~a~~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~la~li~~l~~~~~~~~~~~~~~~~~~ivl~Gg~~~~  305 (319)
                      +..........  ...+.+++++++||+.|.+++++++++|+++++++++.|||              +.|||+|++. .
T Consensus        60 ~~~~~~~~~~~--~~~~~l~~~~~~gd~~a~~~~~~~~~~la~~i~~~i~~ldp--------------~~IvlGG~i~-~  122 (175)
T d2gupa2          60 RYVIEKSGHTD--WDGRKIYQEAAAGNILCQEAIERMNRNLAQGLLNIQYLIDP--------------GVISLGGSIS-Q  122 (175)
T ss_dssp             HHHHHHHSSCC--CCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHCC--------------SEEEEESGGG-G
T ss_pred             HHHHhhccccc--hhhHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcC--------------ceEEECCccc-c
Confidence            33211000001  12577999999999999999999999999999999999998              5899999987 5


Q ss_pred             cHHHHHHHHhh
Q 020972          306 SWLVVFLKLIE  316 (319)
Q Consensus       306 ~~~~~~~~~~~  316 (319)
                      +.+ |++.+.+
T Consensus       123 ~~~-~~~~l~~  132 (175)
T d2gupa2         123 NPD-FIQGVKK  132 (175)
T ss_dssp             CHH-HHHHHHH
T ss_pred             hHH-HHHHHHH
Confidence            554 5565543

>d2gupa1 c.55.1.10 (A:1-114) Hypothetical protein SP2142 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: Hypothetical protein SP2142
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.67  E-value=4.1e-17  Score=127.20  Aligned_cols=95  Identities=14%  Similarity=0.118  Sum_probs=74.3

Q ss_pred             EEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceEEEee
Q 020972           23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV  102 (319)
Q Consensus        23 ~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Igig~  102 (319)
                      ++++||+|||+++++++|.         +|+++.+.+.++.    ...++++    +.+.+.+++     .++.+||||+
T Consensus         2 ~i~~iDiGgT~i~~~l~d~---------~g~i~~~~~~~t~----~~~~~~~----~~i~~~~~~-----~~i~gIGi~~   59 (114)
T d2gupa1           2 TIATIDIGGTGIKFASLTP---------DGKILDKTSISTP----ENLEDLL----AWLDQRLSE-----QDYSGIAMSV   59 (114)
T ss_dssp             CEEEEEEETTEEEEEEECT---------TCCEEEEEEECCC----SSHHHHH----HHHHHHHTT-----SCCSEEEEEE
T ss_pred             eEEEEEeCcccEEEEEEcC---------CCCEEEEEEEccc----ccHHHHH----HHHHHHhhh-----cccceEEEec
Confidence            5889999999999999999         9999998887542    2444444    444444432     3689999999


Q ss_pred             cCCCCchh-------------HHHHHHHHHhhCCCCceEEEeCcHHHHHHhhc
Q 020972          103 SGVNHPTD-------------QQRILNWLRDIFPGNVRLYVHNDALAALASGT  142 (319)
Q Consensus       103 pG~~~~~~-------------~~~l~~~L~~~~~~~~pv~v~NDa~aa~~g~~  142 (319)
                      ||+++++.             .+++++.++ +|+  +||+++||+|++++||+
T Consensus        60 pG~vd~~~g~i~~~~~l~~~~~~~l~~~l~-~~~--~pV~veNDanaaalgE~  109 (114)
T d2gupa1          60 PGAVNQETGVIDGFSAVPYIHGFSWYEALS-SYQ--LPVHLENDANCVGLSEL  109 (114)
T ss_dssp             SSEECTTTCBEESCCSSGGGSSSBHHHHTG-GGC--CCEEEEEHHHHHHHHHH
T ss_pred             cccccCCccEEEcccccCcccCCcHHHHHH-hCC--CCEEEEhHHHHHHHHHH
Confidence            99987642             257888886 587  99999999999999985

>d2aa4a2 c.55.1.10 (A:120-289) N-acetylmannosamine kinase NanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: N-acetylmannosamine kinase NanK
species: Escherichia coli [TaxId: 562]

Probab=99.67  E-value=1.5e-17  Score=138.38  Aligned_cols=135  Identities=14%  Similarity=0.024  Sum_probs=93.0

Q ss_pred             CCCeEEEEECccceeEeEecCCcEEeeCCCCCccCCcCChHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHcCCCChhhH
Q 020972          145 KLHGCVLIAGTGTIAYGFTEDGRDARAAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDEL  224 (319)
Q Consensus       145 ~~~~v~v~~GTGigg~gii~dG~~~raGg~Ghl~gd~Gsa~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~~~~~l  224 (319)
                      .+|++|+++|||++ +|++.||++++        |.+|.++|+||..+.     .++..+.|.-..+++...   +...+
T Consensus         2 ~~n~~~i~~g~GiG-~giv~ng~l~~--------G~~g~aGEiGh~~~~-----~~~~~~~cg~~gclE~~~---s~~al   64 (170)
T d2aa4a2           2 ITDMVFITVSTGVG-GGVVSGCKLLT--------GPGGLAGHIGHTLAD-----PHGPVCGCGRTGCVEAIA---SGRGI   64 (170)
T ss_dssp             CCCEEEEEESSSEE-EEEEETTEEEC--------CTTSCCCCGGGSBSC-----TTSCBCTTSCBSBHHHHH---SHHHH
T ss_pred             CceEEEEEECCCEE-EEEEECCEEEE--------CCCCCCCceeeeeec-----ccccccCcCCccchhhhh---hcchH
Confidence            46899999999995 57999999998        555555555554332     233334333333333333   33444


Q ss_pred             HHHhccCCChHHHhchhHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhcccccccEEEEcchhh
Q 020972          225 IGWTYVDPSWARIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEGVTYTKILKEKVPLLMENILFL  304 (319)
Q Consensus       225 ~~~~~~~~~~~~~a~~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~la~li~~l~~~~~~~~~~~~~~~~~~ivl~Gg~~~  304 (319)
                      .++....    .-....+.+++++++||+.|++++++++++|+.+++++++.|||              +.|||+|++. 
T Consensus        65 ~~~~~~~----~~~~~~~~l~~~~~~gd~~a~~i~~~~~~~la~~l~~l~~~ldP--------------~~IvlgG~i~-  125 (170)
T d2aa4a2          65 AAAAQGE----LAGADAKTIFTRAGQGDEQAQQLIHRSARTLARLIADIKATTDC--------------QCVVVGGSVG-  125 (170)
T ss_dssp             HHTCCGG----GTTCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHCC--------------SEEEEEHHHH-
T ss_pred             HHHHHhh----ccCCCHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHhhhheECC--------------CEEEEeChhh-
Confidence            4433211    11123678999999999999999999999999999999999998              4899999886 


Q ss_pred             hcHHHHHHHHhh
Q 020972          305 LSWLVVFLKLIE  316 (319)
Q Consensus       305 ~~~~~~~~~~~~  316 (319)
                      ... .|++.+.+
T Consensus       126 ~~~-~~~~~i~~  136 (170)
T d2aa4a2         126 LAE-GYLALVET  136 (170)
T ss_dssp             TST-THHHHHHH
T ss_pred             hhh-hHHHHHHH
Confidence            554 35555544

>d1z6ra2 c.55.1.10 (A:82-210) Mlc protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: Mlc protein
species: Escherichia coli [TaxId: 562]

Probab=99.67  E-value=3.8e-17  Score=129.70  Aligned_cols=108  Identities=8%  Similarity=0.074  Sum_probs=92.9

Q ss_pred             CcEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceEEE
Q 020972           21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCL  100 (319)
Q Consensus        21 ~~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Igi  100 (319)
                      ..++||||+|+|+++++++|.         +|+++.+.+.+. ..  .+++++++.+.+.+++++++.+....++.+|||
T Consensus         3 ~~~~l~i~i~~~~i~~~l~Dl---------~G~~l~~~~~~~-~~--~~~~~~~~~l~~~i~~~l~~~~~~~~~i~gIgi   70 (129)
T d1z6ra2           3 AWHYLSLRISRGEIFLALRDL---------SSKLVVEESQEL-AL--KDDLPLLDRIISHIDQFFIRHQKKLERLTSIAI   70 (129)
T ss_dssp             TCEEEEEEEETTEEEEEEEET---------TCCEEEEEEEEC-CS--SCSSCHHHHHHHHHHHHHHHTGGGCCCEEEEEE
T ss_pred             ceEEEEEEECCCEEEEEEEcC---------CCCEEEEEEeec-cc--cchhHHHHHHHHHHHHHHHhcCcccccceeEEE
Confidence            358999999999999999999         999999877653 22  356678899999999999998877778999999


Q ss_pred             eecCCCCchh-------------HHHHHHHHHhhCCCCceEEEeCcHHHHHHhhc
Q 020972          101 AVSGVNHPTD-------------QQRILNWLRDIFPGNVRLYVHNDALAALASGT  142 (319)
Q Consensus       101 g~pG~~~~~~-------------~~~l~~~L~~~~~~~~pv~v~NDa~aa~~g~~  142 (319)
                      ++||+++.+.             +.++++.|++.|+  +||+++||+|+++++|.
T Consensus        71 ~~pG~v~~~~~~~~~~~~~~~w~~~~l~~~l~~~~~--~pV~~~NDa~a~alaE~  123 (129)
T d1z6ra2          71 TLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTG--VPVYIQHDISAWTMAEA  123 (129)
T ss_dssp             EESSEEETTTTEEEECTTCTTCSSBCHHHHHHHHHS--SCEEEEEHHHHHHHHHH
T ss_pred             eeeeeeeecccceeccCcchhccCcchHHHHHHhcC--CCEEEEehHHHHHHHHH
Confidence            9999876432             3589999999997  99999999999999984

>d2ap1a1 c.55.1.10 (A:118-303) Putative regulator protein YcfX {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: Putative regulator protein YcfX
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.67  E-value=2.4e-17  Score=138.62  Aligned_cols=145  Identities=18%  Similarity=0.050  Sum_probs=93.8

Q ss_pred             cCCCCCeEEEEECccceeEeEecCCcEEeeCCCCCccCCcCChHHHHHHHHHHHHHHhcC-----CCCCchhHHHHHHHc
Q 020972          142 TMGKLHGCVLIAGTGTIAYGFTEDGRDARAAGAGPILGDWGSGYGIAAQALTAVIRAYDG-----RGPDTMLTSNILSTL  216 (319)
Q Consensus       142 ~~g~~~~v~v~~GTGigg~gii~dG~~~raGg~Ghl~gd~Gsa~~iG~~~~~~~~~~~dg-----~~~~~~l~~~~~~~~  216 (319)
                      ++..++++|+++|||+| +|++.||++++        |.+|.++|+||+.+........+     ..|.|.-..+++...
T Consensus         2 ~~~y~~v~~l~~GtGiG-~giv~nG~l~~--------G~~g~AGEiGh~~v~~~~~~~~~~~~~~~~c~cg~~gc~e~~~   72 (186)
T d2ap1a1           2 FTQYPLVMGLILGTGVG-GGLVLNGKPIT--------GQSYITGEFGHMRLPVDALTLMGFDFPLRRCGCGQMGCIENYL   72 (186)
T ss_dssp             GGGCSEEEEEEESSSEE-EEEEETTEEEC--------CTTSCTTCGGGSBCCHHHHHHHCTTSCCCBCTTSCBSBTHHHH
T ss_pred             CCCCCEEEEEEEccCeE-EEEEECCEEEe--------CCCCCCceeEEEEECCCCcccccccccccccccCchhhHHhhh
Confidence            34567899999999995 58999999998        55555555555544322111111     123332222222222


Q ss_pred             CCCChhhHHHHhccCCChHHHhchhHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhcccccccE
Q 020972          217 ELSSPDELIGWTYVDPSWARIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEGVTYTKILKEKVPL  296 (319)
Q Consensus       217 ~~~~~~~l~~~~~~~~~~~~~a~~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~la~li~~l~~~~~~~~~~~~~~~~~~i  296 (319)
                         +...+.......   .......+.+++++++||+.|++++++++++||.+++|++++|||              +.|
T Consensus        73 ---s~~~~~~~~~~~---~~~~~~~~~~~~~~~~gd~~a~~i~~~~~~~la~~i~nl~~~ldP--------------e~I  132 (186)
T d2ap1a1          73 ---SGRGFAWLYQHY---YDQSLQAPEIIALWEQGDEQAHAHVERYLDLLAVCLGNILTIVDP--------------DLL  132 (186)
T ss_dssp             ---SHHHHHHHHHHH---HCCCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHCC--------------SEE
T ss_pred             ---hhhhHHHHhhhc---cccccchhhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHcCc--------------CEE
Confidence               122222211100   000113577899999999999999999999999999999999998              489


Q ss_pred             EEEcchhhhcHHHHHHHHhhc
Q 020972          297 LMENILFLLSWLVVFLKLIEG  317 (319)
Q Consensus       297 vl~Gg~~~~~~~~~~~~~~~~  317 (319)
                      ||+|++. ...+ |+++++|.
T Consensus       133 vlGG~i~-~~~~-~~~~l~~~  151 (186)
T d2ap1a1         133 VIGGGLS-NFTA-ITTQLAER  151 (186)
T ss_dssp             EEESGGG-GSTH-HHHSSGGG
T ss_pred             EECCchh-hhHH-HHHHHHHH
Confidence            9999988 5544 67777653

>d1xc3a1 c.55.1.10 (A:1-118) Putative fructokinase YhdR {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: Putative fructokinase YhdR
species: Bacillus subtilis [TaxId: 1423]

Probab=99.66  E-value=6e-17  Score=126.82  Aligned_cols=95  Identities=15%  Similarity=0.154  Sum_probs=76.7

Q ss_pred             EEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceEEEee
Q 020972           23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV  102 (319)
Q Consensus        23 ~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Igig~  102 (319)
                      +++|||+|||+++++++|.         +|+++.+.+.++     ..++++++.+.+.+    ++     .++.++||++
T Consensus         1 l~~giDiGgT~i~~~l~d~---------~g~i~~~~~~~t-----~~~~~~~~~i~~~~----~~-----~~~~~igi~~   57 (118)
T d1xc3a1           1 MLGGIEAGGTKFVCAVGRE---------DGTIIDRIEFPT-----KMPDETIEKVIQYF----SQ-----FSLQAIGIGS   57 (118)
T ss_dssp             CEEEEEECSSEEEEEEECT---------TSCEEEEEEEEC-----CCHHHHHHHHHHHH----TT-----SCCSEEEEEE
T ss_pred             CEEEEEeccCEEEEEEEcC---------CCCEEEEEEecC-----CCHHHHHHHHHHHH----hh-----ccceecceeE
Confidence            4899999999999999999         999999888753     24566666555443    22     2578999999


Q ss_pred             cCCCCch-----------------hHHHHHHHHHhhCCCCceEEEeCcHHHHHHhhc
Q 020972          103 SGVNHPT-----------------DQQRILNWLRDIFPGNVRLYVHNDALAALASGT  142 (319)
Q Consensus       103 pG~~~~~-----------------~~~~l~~~L~~~~~~~~pv~v~NDa~aa~~g~~  142 (319)
                      ||++++.                 .++||.+.|++.|+  +||+++||+|+++++|+
T Consensus        58 ~G~v~~~~~~~~~g~v~~~~~~~w~~~~l~~~l~~~~~--~pv~i~NDana~algE~  112 (118)
T d1xc3a1          58 FGPVDNDKTSQTYGTITATPKAGWRHYPFLQTVKNEMK--IPVGFSTDVNAAALGEF  112 (118)
T ss_dssp             CSSBCCCTTSTTTTSBCCCSSTTTBTCCHHHHHHHHHC--SCEEEEEHHHHHHHHHH
T ss_pred             EeeeecCCCccceeEEEcCCcccccCcCHHHHHHHHHC--CCEEEeehHHHHHHHHH
Confidence            9996542                 13689999999997  99999999999999985

>d1huxa_ c.55.1.5 (A:) Hydroxyglutaryl-CoA dehydratase component A {Acidaminococcus fermentans [TaxId: 905]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: BadF/BadG/BcrA/BcrD-like
domain: Hydroxyglutaryl-CoA dehydratase component A
species: Acidaminococcus fermentans [TaxId: 905]

Probab=99.63  E-value=1.8e-14  Score=125.83  Aligned_cols=226  Identities=14%  Similarity=0.095  Sum_probs=138.1

Q ss_pred             cEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceEEEe
Q 020972           22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLA  101 (319)
Q Consensus        22 ~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Igig  101 (319)
                      .|+||||+|||+|+++++|.         +|+++.+.+.++.    ..++..++.+.+.    +++.+....... ...+
T Consensus         2 M~~lGIDiGGT~~k~~vvd~---------~g~il~~~~~~t~----~~~~~~~~~i~~~----l~~~~~~~~~~~-~~~~   63 (259)
T d1huxa_           2 IYTLGIDVGSTASKCIILKD---------GKEIVAKSLVAVG----TGTSGPARSISEV----LENAHMKKEDMA-FTLA   63 (259)
T ss_dssp             CEEEEEEECSSEEEEEEEET---------TTEEEEEEEEECC----SSCCHHHHHHHHH----HHHHTCCGGGCS-EEEE
T ss_pred             cEEEEEEeCcceEEEEEEcC---------CCcEEEEEEecCC----CCHHHHHHHHHHH----HHHcccccccce-eeec
Confidence            38999999999999999999         9999988776542    2344555555444    444444332222 2222


Q ss_pred             ecCCCCchhHHHHHHHHHhhCCCCceEEEeCcHHHHHHhhc--CCCCCeEEEEECccceeEeEecCCcEEeeCCCCCccC
Q 020972          102 VSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGT--MGKLHGCVLIAGTGTIAYGFTEDGRDARAAGAGPILG  179 (319)
Q Consensus       102 ~pG~~~~~~~~~l~~~L~~~~~~~~pv~v~NDa~aa~~g~~--~g~~~~v~v~~GTGigg~gii~dG~~~raGg~Ghl~g  179 (319)
                      .++....            ...  .|....|+.++.+++..  .+..+++++..||+... ....||...+.++|++..+
T Consensus        64 ~~~~~~~------------~~~--~~~~~~~e~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~  128 (259)
T d1huxa_          64 TGYGRNS------------LEG--IADKQMSELSCHAMGASFIWPNVHTVIDIGGQDVKV-IHVENGTMTNFQMNDKCAA  128 (259)
T ss_dssp             ESTTTTT------------TTT--TCSEEECHHHHHHHHHHHHCTTCCEEEEEETTEEEE-EEEETTEEEEEEEESSCCT
T ss_pred             ccccchh------------hhh--cCCcccccHHHHHHHHHHhCCCCCEEEecCCCCcEE-EEEeCCcEEEEecCcccCC
Confidence            2222111            122  56777899988766642  34457888888888754 4667999999999998877


Q ss_pred             CcCChHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHcCCCChhhHHHHhccCCChHHHhchhHHHHHHHHcCCHHHHHHH
Q 020972          180 DWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWARIAALVPVVVSCAEAGDEVANKIL  259 (319)
Q Consensus       180 d~Gsa~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~v~~~A~~GD~~A~~il  259 (319)
                      ..|+..+.....+.        .. ...+.+ +  ........      ........+.  -..+..++.++++.+..+.
T Consensus       129 g~g~~~~~~~~~~~--------~~-~~e~~~-l--~~~~~~~~------~~~~~~~~~~--~~~i~~~~~~~~~~~~i~~  188 (259)
T d1huxa_         129 GTGRFLDVMANILE--------VK-VSDLAE-L--GAKSTKRV------AISSTCTVFA--ESEVISQLSKGTDKIDIIA  188 (259)
T ss_dssp             TSHHHHHHHHHHHT--------CC-TTTHHH-H--HTTCCSCC------CCCCCSHHHH--HHHHHHHHHTTCCHHHHHH
T ss_pred             chHHHHHHHHHHcC--------CC-HHHHHH-H--HhcCCCCc------ccCCCccchh--hhHHhHHhhCCCcHHHHHH
Confidence            77766655544331        11 111111 1  01000000      0000001111  1357788889999888888


Q ss_pred             HHHHHHHHHHHHHHHHHhcccCCCcchhhcccccccEEEEcchhhhcHHHHHHHHhh
Q 020972          260 QDSVEELALSVKAVVQRLSLSGEGVTYTKILKEKVPLLMENILFLLSWLVVFLKLIE  316 (319)
Q Consensus       260 ~~a~~~Lg~~la~li~~l~~~~~~~~~~~~~~~~~~ivl~Gg~~~~~~~~~~~~~~~  316 (319)
                      +.+...+...+..+.+.++|              .+||++||++ ++ +.+.+.+.|
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~--------------~~Iv~gGGv~-~~-~~~~~~l~~  229 (259)
T d1huxa_         189 GIHRSVASRVIGLANRVGIV--------------KDVVMTGGVA-QN-YGVRGALEE  229 (259)
T ss_dssp             HHHHHHHHHHHHHHHTTCCC--------------SSEEEESGGG-GC-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccCC--------------CcEEEEcccc-cc-HHHHHHHHH
Confidence            77777777777777777766              5899999999 44 666666543

>d2hoea2 c.55.1.10 (A:200-368) N-acetylglucosamine kinase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: N-acetylglucosamine kinase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.62  E-value=2.4e-16  Score=130.80  Aligned_cols=126  Identities=12%  Similarity=0.139  Sum_probs=89.8

Q ss_pred             CCeEEEEECccceeEeEecCCcEEeeCCCCCccCCcCChHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHcCCCChhhHH
Q 020972          146 LHGCVLIAGTGTIAYGFTEDGRDARAAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELI  225 (319)
Q Consensus       146 ~~~v~v~~GTGigg~gii~dG~~~raGg~Ghl~gd~Gsa~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~~~~~l~  225 (319)
                      +|++|+++|||+| +|++.||++++        |..|.++|+||..+      .++..+.| +...    +   +...+.
T Consensus         2 ~~~~~i~~g~GiG-~gii~~g~l~~--------G~~g~aGEiGh~~v------~~~~~~~c-~~~~----~---s~~~l~   58 (169)
T d2hoea2           2 DSFAWILTGKGIG-AGIIIDGELYR--------GENGYAGEIGYTRV------FNGNEYVF-LEDV----C---NENVVL   58 (169)
T ss_dssp             SCEEEEEESSSCE-EEEEETTEECC--------CSSSCCCCGGGCEE------ECSSSEEE-HHHH----H---CHHHHH
T ss_pred             CeEEEEEECCceE-EEEEECCEEEe--------CCCCCCcccccccc------cCCCCccc-cccc----c---hHHHHH
Confidence            6899999999995 57999999998        55555566665433      12222222 2111    1   122222


Q ss_pred             HHhccCCChHHHhchhHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhcccccccEEEEcchhhh
Q 020972          226 GWTYVDPSWARIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEGVTYTKILKEKVPLLMENILFLL  305 (319)
Q Consensus       226 ~~~~~~~~~~~~a~~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~la~li~~l~~~~~~~~~~~~~~~~~~ivl~Gg~~~~  305 (319)
                      +...+        ...+.+++++++||+.|.+++++++++|+.++++++++|||              +.|||+|++. +
T Consensus        59 ~~~~~--------~~~~~l~~~~~~gd~~a~~~~~~~~~~la~~l~n~~~~~dP--------------e~IvlgG~~~-~  115 (169)
T d2hoea2          59 KHVLS--------MGFSSLAEARDSGDVRVKEYFDDIARYFSIGLLNLIHLFGI--------------SKIVIGGFFK-E  115 (169)
T ss_dssp             HHHHH--------HCCC-TTHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHCC--------------CEEEEEEGGG-G
T ss_pred             hhhcc--------cchHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhCC--------------CEEEEeChHH-h
Confidence            22110        11345778899999999999999999999999999999998              5899999998 7


Q ss_pred             cHHHHHHHHhhc
Q 020972          306 SWLVVFLKLIEG  317 (319)
Q Consensus       306 ~~~~~~~~~~~~  317 (319)
                      .++.|++.+.+.
T Consensus       116 ~~~~~~~~i~~~  127 (169)
T d2hoea2         116 LGENFLKKIKIE  127 (169)
T ss_dssp             GHHHHHHHHHHH
T ss_pred             chHHHHHHHHHH
Confidence            899999988663

>d2ewsa1 c.55.1.14 (A:1-267) Type II pantothenate kinase, CoaW {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Fumble-like
domain: Type II pantothenate kinase, CoaW
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.49  E-value=1.4e-15  Score=133.22  Aligned_cols=219  Identities=12%  Similarity=-0.015  Sum_probs=125.7

Q ss_pred             EEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceEEEeecC
Q 020972           25 LGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVSG  104 (319)
Q Consensus        25 lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Igig~pG  104 (319)
                      ||||+|||+|+++++|.         +++++.+...       .+++.+++.        +++     ..+..++++.||
T Consensus         3 iGIDiGGT~ik~~lvd~---------~g~i~~~~~~-------~t~~~i~~~--------i~~-----~~~~~i~i~g~g   53 (267)
T d2ewsa1           3 VGIDAGGTLIKIVQEQD---------NQRTFKTELT-------KNIDQVVEW--------LNQ-----QQIEKLCLTGGN   53 (267)
T ss_dssp             EEEEECSSEEEEEEECS---------SCEEEEEEEG-------GGHHHHHHH--------HHT-----SCCSEEEEESTT
T ss_pred             EEEEEChhhEEEEEEeC---------CCcEEEEEec-------ccHHHHHHH--------HHH-----hhhhheeeeccc
Confidence            89999999999999999         9999887543       134443332        222     246678888888


Q ss_pred             CCCchh-----------HHH------HHHHHHhhCCCCceEEEeCcHHHHHHhhcCCCCCeEEEEECccceeEeEecCCc
Q 020972          105 VNHPTD-----------QQR------ILNWLRDIFPGNVRLYVHNDALAALASGTMGKLHGCVLIAGTGTIAYGFTEDGR  167 (319)
Q Consensus       105 ~~~~~~-----------~~~------l~~~L~~~~~~~~pv~v~NDa~aa~~g~~~g~~~~v~v~~GTGigg~gii~dG~  167 (319)
                      ..+...           ...      +...... ... .++...||.....+.  .+..+...++.|||+++ |++.++.
T Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~g~g~G~-g~~~~~~  128 (267)
T d2ewsa1          54 AGVIAENINIPAQIFVEFDAASQGLGILLKEQG-HDL-ADYIFANVGTGTSLH--YFDGQSQRRVGGIGTGG-GMIQGLG  128 (267)
T ss_dssp             HHHHHTTSSSCCEECCHHHHHHHHHHHHHHHTT-CCC-SCEEEEEESSSEEEE--EECSSCEEEEEEESCSH-HHHHHHH
T ss_pred             ccccchheeccccccchHHHHHHHhhhhhhhcC-Ccc-cchHHHhcccceEEe--cccCceeEeeccccccc-ceehhhH
Confidence            643221           111      1111111 111 467777777644332  23345667888898855 6777887


Q ss_pred             EEeeCCCCCccCCcCChHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHcCCCChhhHHHHhccCCChHHHhchhHHHHHH
Q 020972          168 DARAAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWARIAALVPVVVSC  247 (319)
Q Consensus       168 ~~raGg~Ghl~gd~Gsa~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~v~~~  247 (319)
                      .++        +..+.+.++|+....     .+.....+.................    ......      ........
T Consensus       129 ~~~--------~~~~~~ge~g~~~~~-----g~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~------~~~~~~~~  185 (267)
T d2ewsa1         129 YLL--------SQITDYKQLTDMAQH-----GDRNTIDLKVRHIYKDTEPPIPGDL----TAANFG------HVLHHLDA  185 (267)
T ss_dssp             HHH--------HCCCCHHHHHHHHTT-----CCCTTTCEETTTC-------CCTTS----EEETTT------TGGGCTTS
T ss_pred             HHh--------cCCCChhHHHHhhcc-----CCCcccccccchhhcCCCccchhhh----hhhhhc------chhhhhhh
Confidence            776        556678888887642     1111111111100000000000000    000000      00111222


Q ss_pred             HHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhcccccccEEEEcchhhhcHHHHHHHHh
Q 020972          248 AEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEGVTYTKILKEKVPLLMENILFLLSWLVVFLKLI  315 (319)
Q Consensus       248 A~~GD~~A~~il~~a~~~Lg~~la~li~~l~~~~~~~~~~~~~~~~~~ivl~Gg~~~~~~~~~~~~~~  315 (319)
                      ..+.|..+.++++..+++|+..+.++.+.+||              ..||++||++ .+.+.+++.+.
T Consensus       186 ~~~~~~~a~~~~~~~~~~l~~~~~~~~~~~~~--------------~~Iv~~GG~~-~~~~~l~~~i~  238 (267)
T d2ewsa1         186 DFTPSNKLAAVIGVVGEVVTTMAITVAREFKT--------------ENIVYIGSSF-HNNALLRKVVE  238 (267)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--------------CEEEEESGGG-TTCHHHHHHHH
T ss_pred             hcchhhhHHHHHHHHHHHHHHHHHHHHhhcCC--------------CCEEEECChh-hcCHHHHHHHH
Confidence            34567888899999999999999999999998              3799999998 56666665543

>d1q18a1 c.55.1.7 (A:2-111) Glucokinase Glk {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Glucokinase
domain: Glucokinase Glk
species: Escherichia coli [TaxId: 562]

Probab=99.49  E-value=2.7e-14  Score=110.00  Aligned_cols=99  Identities=15%  Similarity=0.028  Sum_probs=70.3

Q ss_pred             CcEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceEEE
Q 020972           21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCL  100 (319)
Q Consensus        21 ~~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Igi  100 (319)
                      ++|+|++|||||++|++++|.         ++.++...+..++... .+.       .+++++++++.+.   ++.++++
T Consensus         1 t~~~L~~DIGGTn~r~alv~~---------~~~~l~~~~~~~~~~~-~~~-------~~~i~~~~~~~~~---~~~~~~i   60 (110)
T d1q18a1           1 TKYALVGDVGGTNARLALCDI---------ASGEISQAKTYSGLDY-PSL-------EAVIRVYLEEHKV---EVKDGCI   60 (110)
T ss_dssp             CCEEEEEEECSSEEEEEEEET---------TTCCEEEEEEEEGGGC-SCH-------HHHHHHHHHHHTC---CCSEEEE
T ss_pred             CcEEEEEEECchhEEEEEEEc---------CCCeEEEEEeecccch-hhH-------HHHHHHHHhhccc---ccceEEE
Confidence            369999999999999999998         6665555443332221 233       3344555555442   5788999


Q ss_pred             eecCCCCch-------hHHHHHHHHHhhCCCCceEEEeCcHHHHHHh
Q 020972          101 AVSGVNHPT-------DQQRILNWLRDIFPGNVRLYVHNDALAALAS  140 (319)
Q Consensus       101 g~pG~~~~~-------~~~~l~~~L~~~~~~~~pv~v~NDa~aa~~g  140 (319)
                      |+||+++..       .+.+..+.|++.|+. .||.|+||++++++|
T Consensus        61 ~~ag~~~~~~~~~~n~~w~~~~~~l~~~~~~-~~v~v~NDa~AaA~g  106 (110)
T d1q18a1          61 AIACPITGDWVAMTNHTWAFSIAEMKKNLGF-SHLEIINDFTAVSMA  106 (110)
T ss_dssp             EESSCCCSSEECCSSGGGCEEHHHHHHHTTC-SEEEEEEHHHHHHHH
T ss_pred             cccccccCcEEeecccCCccCHHHHHHHhCC-CcEEEEehHHHHhcc
Confidence            999997643       245567889999972 359999999999986

>d1xc3a2 c.55.1.10 (A:119-294) Putative fructokinase YhdR {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: Putative fructokinase YhdR
species: Bacillus subtilis [TaxId: 1423]

Probab=99.45  E-value=9.3e-14  Score=115.65  Aligned_cols=121  Identities=15%  Similarity=0.029  Sum_probs=75.8

Q ss_pred             CCCCeEEEEECccceeEeEecCCcEEe---eCCCCCccCCcCChHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHcCCCC
Q 020972          144 GKLHGCVLIAGTGTIAYGFTEDGRDAR---AAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSS  220 (319)
Q Consensus       144 g~~~~v~v~~GTGigg~gii~dG~~~r---aGg~Ghl~gd~Gsa~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~~  220 (319)
                      |.+|++|+++|||+|+ |+++||+++|   +|++||+..+...               .+...+.|+....+.+.+.  +
T Consensus         1 G~~~~~~l~lGtGiG~-gii~ng~l~~G~~aGEiGh~~v~~~~---------------~~~~~~~~~~~~~~~e~~~--s   62 (176)
T d1xc3a2           1 GLDSCLYITIGTGIGA-GAIVEGRLLQGLSHPEMGHIYIRRHP---------------DDVYQGKCPYHGDCFEGLA--S   62 (176)
T ss_dssp             TCSCEEEEEESSSEEE-EEEETTEECCSSSCCCGGGCBCCCCT---------------TCCCCCSBTTTBSBHHHHH--S
T ss_pred             CcceEEEEEEccCeEE-EEEECCEEeeCCCCCccceecccccc---------------cCccccCcCCccchhhhhc--c
Confidence            4579999999999955 7999999987   4777777643210               0111122222111111111  1


Q ss_pred             hhhHHHHhccCCChHHHhchhHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhcccccccEEEEc
Q 020972          221 PDELIGWTYVDPSWARIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEGVTYTKILKEKVPLLMEN  300 (319)
Q Consensus       221 ~~~l~~~~~~~~~~~~~a~~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~la~li~~l~~~~~~~~~~~~~~~~~~ivl~G  300 (319)
                      ...+.....                 .....++.+.+++++++++|+.+++++++.|||              +.|||+|
T Consensus        63 ~~~l~~~~~-----------------~~~~~~~~~~~i~~~~~~~la~~i~~~~~~~dP--------------~~IviGG  111 (176)
T d1xc3a2          63 GPAIEARWG-----------------KKAADLSDIAQVWELEGYYIAQALAQYILILAP--------------KKIILGG  111 (176)
T ss_dssp             HHHHHHHHS-----------------SCTTTTTTCHHHHHHHHHHHHHHHHHHHHHTCC--------------SCEEEES
T ss_pred             HHHHHHHHh-----------------hcchhhHHHHHHHHHHHHHHHHHHHHHHHHHCC--------------CEEEEcC
Confidence            222211111                 111244556789999999999999999999998              5899999


Q ss_pred             chhhhcHHHHHHHHh
Q 020972          301 ILFLLSWLVVFLKLI  315 (319)
Q Consensus       301 g~~~~~~~~~~~~~~  315 (319)
                      |+. ++++ +++.++
T Consensus       112 gi~-~~~~-l~~~i~  124 (176)
T d1xc3a2         112 GVM-QQKQ-VFSYIY  124 (176)
T ss_dssp             GGG-GSTH-HHHHHH
T ss_pred             hhh-ccHh-HHHHHH
Confidence            998 6766 334433

>d1zbsa2 c.55.1.5 (A:1-107) Hypothetical protein PG1100 {Porphyromonas gingivalis [TaxId: 837]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: BadF/BadG/BcrA/BcrD-like
domain: Hypothetical protein PG1100
species: Porphyromonas gingivalis [TaxId: 837]

Probab=99.42  E-value=9.3e-13  Score=100.86  Aligned_cols=105  Identities=22%  Similarity=0.200  Sum_probs=83.8

Q ss_pred             EEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceEEEee
Q 020972           23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV  102 (319)
Q Consensus        23 ~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Igig~  102 (319)
                      ++|+||.|||||++++.|          +|+++.+.+.++.|+...+.+++.+.|.+.+.+.+   ....++|..+.+|+
T Consensus         1 MilivDgGgTKT~~vl~d----------~g~~i~~~~t~g~Np~~~~~~~~~~~l~~~~~~~l---~~~~~~i~~i~~g~   67 (107)
T d1zbsa2           1 MILIGDSGSTKTDWCIAK----------EGKSLGRFQTSGINPFQQDRNEIDTALRSEVLPAI---GQKASSIRAVYFYG   67 (107)
T ss_dssp             CEEEEEECSSEEEEEEEE----------TTEEEEEEEEECCCTTTSCHHHHHHHHTTTTHHHH---TTSTTTCCEEEEEE
T ss_pred             CEEEEEeccccEEEEEEC----------CCCeEEEEecCCcCcccCCHHHHHHHHHHHHHHHH---hccccCCcEEEEEe
Confidence            478999999999998877          58889888888889877888998888877655444   33456899999999


Q ss_pred             cCCCCchhHHHHHHHHHhhCCCCceEEEeCcHHHHHHhh
Q 020972          103 SGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASG  141 (319)
Q Consensus       103 pG~~~~~~~~~l~~~L~~~~~~~~pv~v~NDa~aa~~g~  141 (319)
                      +|+..+ ....+.+.|.+.|+...++.|.||..+|+++.
T Consensus        68 AG~~~~-~~~~i~~~l~~~~~~~~~i~V~~D~~aA~~a~  105 (107)
T d1zbsa2          68 AGCTPA-KAPMLNEALDSMLPHCDRIEVAGDMLGAARAL  105 (107)
T ss_dssp             TTCCTT-THHHHHHHHHHHSTTCSEEEEECHHHHHHHHH
T ss_pred             cCCCch-hhHHHHHHHHHHCCCCCEEEECChHHHHHHHh
Confidence            999754 45567777888886424799999999988864

>d1woqa2 c.55.1.10 (A:140-263) Inorganic polyphosphate/ATP-glucomannokinase PPGMK {Arthrobacter sp. KM [TaxId: 184230]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: Inorganic polyphosphate/ATP-glucomannokinase PPGMK
species: Arthrobacter sp. KM [TaxId: 184230]

Probab=99.24  E-value=3.9e-12  Score=99.91  Aligned_cols=96  Identities=17%  Similarity=-0.029  Sum_probs=69.9

Q ss_pred             CCeEEEEECccceeEeEecCCcEEeeCCCCCccCCcCChHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHcCCCChhhHH
Q 020972          146 LHGCVLIAGTGTIAYGFTEDGRDARAAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELI  225 (319)
Q Consensus       146 ~~~v~v~~GTGigg~gii~dG~~~raGg~Ghl~gd~Gsa~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~~~~~l~  225 (319)
                      .+++++++|||+|+ |++.||++++.||+||+..+.+.                            ++...   +...+ 
T Consensus         3 g~v~~ltlGTGiG~-gii~nG~l~~ggEiGh~~~~~~~----------------------------~e~~~---s~~~~-   49 (124)
T d1woqa2           3 GTVLVITLGTGIGS-AFIFDGKLVPNAELGHLEIDGHD----------------------------AETKA---SAVAR-   49 (124)
T ss_dssp             SEEEEEEESSSEEE-EEEETTEEETTCCGGGCEETTEE----------------------------HHHHH---SHHHH-
T ss_pred             cEEEEEEEcCCeeE-EEEECCEEccCCccccccccCCC----------------------------hhhhh---ccchH-
Confidence            47899999999955 79999999999999998753221                            01111   10000 


Q ss_pred             HHhccCCChHHHhchhHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhcccccccEEEEcchhhh
Q 020972          226 GWTYVDPSWARIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEGVTYTKILKEKVPLLMENILFLL  305 (319)
Q Consensus       226 ~~~~~~~~~~~~a~~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~la~li~~l~~~~~~~~~~~~~~~~~~ivl~Gg~~~~  305 (319)
                                         .+   +.     ..+++++++|++.++++++.|||              +.|||+||++ +
T Consensus        50 -------------------~~---~~-----~~~~~~~~~la~~l~~~~~~~dP--------------e~IVlGGgi~-~   87 (124)
T d1woqa2          50 -------------------ER---DG-----LSWDEYSVLLQRYFSHVEFLFSP--------------ELFIVGGGIS-K   87 (124)
T ss_dssp             -------------------HH---TT-----CCHHHHHHHHHHHHHHHHHHHCC--------------SEEEEESGGG-G
T ss_pred             -------------------HH---HH-----HHHHHHHHHHHHHHHHHHHHhCC--------------CEEEEcchHh-h
Confidence                               00   00     11567889999999999999998              5899999998 8


Q ss_pred             cHHHHHHHHhh
Q 020972          306 SWLVVFLKLIE  316 (319)
Q Consensus       306 ~~~~~~~~~~~  316 (319)
                      .++.|++++.+
T Consensus        88 ~~~~~~~~l~~   98 (124)
T d1woqa2          88 RADEYLPNLRL   98 (124)
T ss_dssp             GGGGTGGGCCC
T ss_pred             ChHHHhhhhhc
Confidence            89988877654

>d1zxoa1 c.55.1.5 (A:3-106) Hypothetical protein BT3618 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: BadF/BadG/BcrA/BcrD-like
domain: Hypothetical protein BT3618
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=98.05  E-value=2.5e-06  Score=63.48  Aligned_cols=100  Identities=17%  Similarity=0.076  Sum_probs=68.7

Q ss_pred             EEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceEEEeecC
Q 020972           25 LGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVSG  104 (319)
Q Consensus        25 lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Igig~pG  104 (319)
                      |-+|.|+||+.+.++|          +|+.+.+.+....||.-.+.+.+.++|.+...-.+     ..++|..|-+-=+|
T Consensus         1 LIaDSGSTKtDW~l~~----------~g~~~~~~~T~G~NP~~~s~~~i~~~l~~~~~~~~-----~~~~v~~V~FYGAG   65 (104)
T d1zxoa1           1 LIADSGSTKTDWCVVL----------NGAVIKRLGTKGINPFFQSEEEIQQKLTASLLPQL-----PEGKFNAVYFYGAG   65 (104)
T ss_dssp             -CEECCTTCEEEEEEC----------SSSEEEEEEECCCCTTTSCSTTTTTTTTC------------------CEEECTT
T ss_pred             CeeccCCCceeEEEEc----------CCCeEEEEEcCccCcccCCHHHHHHHHHhCcchhh-----hhccccEEEEEccC
Confidence            3479999999999987          57777777777777765666666666655432111     22468888888899


Q ss_pred             CCCchhHHHHHHHHHhhCCCCceEEEeCcHHHHHHh
Q 020972          105 VNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALAS  140 (319)
Q Consensus       105 ~~~~~~~~~l~~~L~~~~~~~~pv~v~NDa~aa~~g  140 (319)
                      +.+++....++..|++.|+. ..|.|++|..+|+++
T Consensus        66 C~~~~~~~~~~~~l~~~f~~-a~I~V~~DllaAa~A  100 (104)
T d1zxoa1          66 CTPEKAPVLRRAIADSLPVI-GNIKANSDMLAAAHG  100 (104)
T ss_dssp             CCTTTTHHHHHHHHHHSCCC-SCCEEECSHHHHHHH
T ss_pred             CCCccHHHHHHHHHHhCCCC-CEEEECchHHHHHHH
Confidence            97776677788888888874 689999999999885

>d1r59o1 c.55.1.4 (O:5-256) Glycerol kinase {Enterococcus casseliflavus [TaxId: 37734]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Glycerol kinase
domain: Glycerol kinase
species: Enterococcus casseliflavus [TaxId: 37734]

Probab=97.79  E-value=1.3e-06  Score=75.64  Aligned_cols=74  Identities=16%  Similarity=0.256  Sum_probs=58.8

Q ss_pred             cEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCC------CccccCHHHHHHHHHHHHHHHHHHcCCCcccc
Q 020972           22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCS------NHNSVGEDAARETIEKVMADALLKSGSNRSAV   95 (319)
Q Consensus        22 ~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~------~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i   95 (319)
                      .|+||||+|.|++|++|+|.         +|+++.+.+.+..      ...+++++++++.+.+++++++.+++..+.+|
T Consensus         1 nyvlgiDiGTtsvKa~l~D~---------~g~~~~~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~~~~~~~~~~~~~~~i   71 (252)
T d1r59o1           1 NYVMAIDQGTTSSRAIIFDR---------NGKKIGSSQKEFPQYFPKSGWVEHNANEIWNSVQSVIAGAFIESGIRPEAI   71 (252)
T ss_dssp             CEEEEEBCCSSBCBCCEECS---------SSCBCCCCCCBCCCCCCSTTCCBCCGGGSSSTTTTTSHHHHTTTTCCTTSE
T ss_pred             CEEEEEEecccceeeeEEeC---------CCCEEEEEEEeCCceecCCCcEEECHHHHHHHHHHHHHHHhhhhhhccccc
Confidence            48999999999999999999         8998876654311      12245788888888999999988888888889


Q ss_pred             ceEEEeecC
Q 020972           96 RAVCLAVSG  104 (319)
Q Consensus        96 ~~Igig~pG  104 (319)
                      .+|++..-+
T Consensus        72 ~aI~is~~~   80 (252)
T d1r59o1          72 AGIGITNQR   80 (252)
T ss_dssp             EEEEECCCS
T ss_pred             ceEEEeCCc
Confidence            998887544

>d1bdga1 c.55.1.3 (A:13-222) Hexokinase {Blood fluke (Schistosoma mansoni) [TaxId: 6183]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Hexokinase
domain: Hexokinase
species: Blood fluke (Schistosoma mansoni) [TaxId: 6183]

Probab=97.56  E-value=0.0011  Score=55.03  Aligned_cols=118  Identities=16%  Similarity=0.055  Sum_probs=72.3

Q ss_pred             cccCCCcEEEEEEcCccceeEEEEeCccCCCCCCCCCC--eEEEEecC-CCCccccCHHHHHHHHHHHHHHHHHHcCCCc
Q 020972           16 EESGGREVILGLDGGTTSTVCICMPVISMSDSLPDPLP--VLARAAAG-CSNHNSVGEDAARETIEKVMADALLKSGSNR   92 (319)
Q Consensus        16 ~~~~m~~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~--il~~~~~~-~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~   92 (319)
                      ++....+.+|+||+|||+.|++++++.+       +++  ...+...+ +......+.+++.+.|++.|.+++++.+...
T Consensus        60 PtG~E~G~fLalDlGGTn~Rv~~V~L~g-------~~~~~~~~~~~~~ip~~~~~~~~~~lFd~iA~~i~~fl~~~~~~~  132 (208)
T d1bdga1          60 PNGTETGNFLALDLGGTNYRVLSVTLEG-------KGKSPRIQERTYCIPAEKMSGSGTELFKYIAETLADFLENNGMKD  132 (208)
T ss_dssp             CCSCCCEEEEEEEESSSSEEEEEEEECC--------CCCCEEEEEEECCCTTTTTSBHHHHHHHHHHHHHHHHHHTTCCS
T ss_pred             CCCCccceEEEEEecCceEEEEEEEecC-------CCcceEEEEEEeeCCHHHccCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence            4555567899999999999999999821       122  23332222 2222234568899999999999999876543


Q ss_pred             cccceEEEeecCCCCch-----------------------hHHHHHHHHHhh-CCCCceEEEeCcHHHHHHhhc
Q 020972           93 SAVRAVCLAVSGVNHPT-----------------------DQQRILNWLRDI-FPGNVRLYVHNDALAALASGT  142 (319)
Q Consensus        93 ~~i~~Igig~pG~~~~~-----------------------~~~~l~~~L~~~-~~~~~pv~v~NDa~aa~~g~~  142 (319)
                      .. .-+|+.++=+....                       -..-|.+.|+++ ++ ...+.|.||..+.+++.+
T Consensus       133 ~~-l~lGfTFSFP~~Q~s~~~g~Li~wtKgF~~~gv~g~dv~~lL~~al~r~~~~-v~v~aivNDTvgTL~a~a  204 (208)
T d1bdga1         133 KK-FDLGFTFSFPCVQKGLTHATLVRWTKGFSADGVEGHNVAELLQTELDKRELN-VKCVAVVNDTVGTLASCA  204 (208)
T ss_dssp             SC-EEEEEEECSCEEEETTTEEEECCCCTTCCCBTCTTSBHHHHHHHHHHTTTCC-EEEEEEECHHHHHHHHHH
T ss_pred             Cc-cccEEEEcCccccCCCCcEEEEeccccccCCCccCCcHHHHHHHHHHhcCCC-ceEEEEEEccHHHHHhhh
Confidence            22 23444443332210                       012456666554 22 125889999998877653

>d1czan3 c.55.1.3 (N:466-670) Mammalian type I hexokinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Hexokinase
domain: Mammalian type I hexokinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.49  E-value=0.00058  Score=56.58  Aligned_cols=118  Identities=14%  Similarity=0.039  Sum_probs=71.8

Q ss_pred             cccCCCcEEEEEEcCccceeEEEEeCccCCCCCCCCC-CeE--EEEecC-CCCccccCHHHHHHHHHHHHHHHHHHcCCC
Q 020972           16 EESGGREVILGLDGGTTSTVCICMPVISMSDSLPDPL-PVL--ARAAAG-CSNHNSVGEDAARETIEKVMADALLKSGSN   91 (319)
Q Consensus        16 ~~~~m~~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G-~il--~~~~~~-~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~   91 (319)
                      ++....+.+|+||+|||+.|++++++.+       ++ .+.  .....+ |......+.+++.+.|++.|.+++++.+.+
T Consensus        55 PtG~E~G~fLalDlGGTn~Rv~~V~L~g-------~~~~~~~~~~~~~~ip~~~~~~~~~eLFd~iA~~i~~fl~~~~~~  127 (205)
T d1czan3          55 PDGTENGDFLALDLGGTNFRVLLVKIRS-------GKKRTVEMHNKIYAIPIEIMQGTGEELFDHIVSCISDFLDYMGIK  127 (205)
T ss_dssp             CCSCCCEEEEEEEESSSSEEEEEEEEEC-------STTCEEEEEEEEECCCHHHHTSBHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             CCCCccceEEEEEecCceEEEEEEEecC-------CCCceEEEEeeeecCCHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Confidence            4555567899999999999999998721       22 122  222221 111112356788999999999999887754


Q ss_pred             ccccceEEEeecCCCCch-----------------------hHHHHHHHHHhh--CCCCceEEEeCcHHHHHHhhc
Q 020972           92 RSAVRAVCLAVSGVNHPT-----------------------DQQRILNWLRDI--FPGNVRLYVHNDALAALASGT  142 (319)
Q Consensus        92 ~~~i~~Igig~pG~~~~~-----------------------~~~~l~~~L~~~--~~~~~pv~v~NDa~aa~~g~~  142 (319)
                      ..+ .-+|+.++=+....                       -..-|.+.|+++  ++- ..+.|.||..+.+++.+
T Consensus       128 ~~~-~~lGfTFSFP~~Q~s~~~g~Li~wtKgf~~~~~~g~dv~~lL~~al~~r~~~~v-~v~aivNDTvgTL~s~a  201 (205)
T d1czan3         128 GPR-MPLGFTFSFPCQQTSLDAGILITWTKGFKATDCVGHDVVTLLRDAIKRREEFDL-DVVAVVNDTVGTMMTCA  201 (205)
T ss_dssp             SSC-CEEEEEECSCEEEEETTEEEECCCCTTCCCBSCTTSBHHHHHHHHHHHHTSCCC-EEEEEECHHHHHHHHHH
T ss_pred             CCc-ccceEEEeceeeccCCCcEEEEEeeCceecCCcccchHHHHHHHHHHhcCCCCc-eEEEEEEhhHHHHHhhc
Confidence            333 23444444332210                       023567777665  331 24669999998877653

>d1czan1 c.55.1.3 (N:16-222) Mammalian type I hexokinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Hexokinase
domain: Mammalian type I hexokinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.33  E-value=0.001  Score=55.17  Aligned_cols=119  Identities=9%  Similarity=0.053  Sum_probs=72.1

Q ss_pred             cccCCCcEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEE-E-EecCC-CCccccCHHHHHHHHHHHHHHHHHHcCCCc
Q 020972           16 EESGGREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLA-R-AAAGC-SNHNSVGEDAARETIEKVMADALLKSGSNR   92 (319)
Q Consensus        16 ~~~~m~~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~-~-~~~~~-~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~   92 (319)
                      ++....+.+|+||+|||+.|++++.+.++      ....+. + ...+. ......+.+++.+.|++.+.+++++.+...
T Consensus        57 P~G~E~G~flalDlGGTn~Rv~~V~L~g~------~~~~~~~~~~~~~ip~~~~~~~~~~lFd~IA~~i~~fl~~~~~~~  130 (207)
T d1czan1          57 PDGSEKGDFIALDLGGSSFRILRVQVNHE------KNQNVHMESEVYDTPENIVHGSGSQLFDHVAECLGDFMEKRKIKD  130 (207)
T ss_dssp             CCSCCCEEEEEEEESSSSEEEEEEEEEEE------TTEEEEEEEEEECCCHHHHSSBHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred             CCccccceEEEEecCCceEEEEEEEeCCC------CCccEEEEEEeecCCHHHhcCCHHHHHHHHHHHHHHHHHhcCcCC
Confidence            55666779999999999999999987211      112222 2 22221 111123567889999999999998776543


Q ss_pred             cc-cceEEEeecCCCCc-h--------------------hHHHHHHHHHhh--CCCCceEEEeCcHHHHHHhh
Q 020972           93 SA-VRAVCLAVSGVNHP-T--------------------DQQRILNWLRDI--FPGNVRLYVHNDALAALASG  141 (319)
Q Consensus        93 ~~-i~~Igig~pG~~~~-~--------------------~~~~l~~~L~~~--~~~~~pv~v~NDa~aa~~g~  141 (319)
                      .. ..|+.+++|=--.. .                    -..-|.+.|+++  ++- ..+.|.||..+.+++.
T Consensus       131 ~~l~lGfTFSFP~~Q~sl~~g~Li~wtKgF~~~~v~G~dv~~lL~~al~r~~~~~v-~v~aivNDTvgTL~s~  202 (207)
T d1czan1         131 KKLPVGFTFSFPCQQSKIDEAILITWTKRFKASGVEGADVVKLLNKAIKKRGDYDA-NIVAVVNDTVGTMMTC  202 (207)
T ss_dssp             SCCCEEEEECSCEECSSTTCCEECCCCTTCCCBTCTTSBHHHHHHHHHHHHCSCCC-CEEEEECHHHHHHHHH
T ss_pred             CCCccEEEEcCeeccCCCCcEEEEeccccCccCCCCCCcHHHHHHHHHHhcCCCCc-eEEEEEEchHHHHHHh
Confidence            22 23444444431110 0                    023567777665  332 4689999999887764

>d1v4sa1 c.55.1.3 (A:14-218) Glucokinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Hexokinase
domain: Glucokinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.28  E-value=0.0025  Score=52.68  Aligned_cols=119  Identities=14%  Similarity=-0.009  Sum_probs=71.8

Q ss_pred             cccCCCcEEEEEEcCccceeEEEEeCccCCCCCCCCCC--eE-EE--EecCCCCccccCHHHHHHHHHHHHHHHHHHcCC
Q 020972           16 EESGGREVILGLDGGTTSTVCICMPVISMSDSLPDPLP--VL-AR--AAAGCSNHNSVGEDAARETIEKVMADALLKSGS   90 (319)
Q Consensus        16 ~~~~m~~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~--il-~~--~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~   90 (319)
                      ++....+.+|+||+|||+.|++++++....     .+.  +. .+  ... |......+.++..+.|++.|.+++++...
T Consensus        53 PtG~E~G~flalDlGGTn~Rv~~V~L~~~~-----~~~~~~~~~~~~~~i-p~~~~~~t~~~LFd~iA~~i~~fl~~~~~  126 (205)
T d1v4sa1          53 PEGSEVGDFLSLDLGGTNFRVMLVKVGEGE-----EGQWSVKTKHQMYSI-PEDAMTGTAEMLFDYISECISDFLDKHQM  126 (205)
T ss_dssp             CCCCCCEEEEEEEESSSEEEEEEEEECCCS-----SSCCEEEEEEEEEEC-CSTTTSSBHHHHHHHHHHHHHHHHHTTTC
T ss_pred             CCCcccceEEEEecCCceEEEEEEEeCCCC-----CCCceeEEEeecccC-ChhhccCCHHHHHHHHHHHHHHHHHhhCC
Confidence            455556789999999999999999972110     111  11 11  122 22222245788999999999999988654


Q ss_pred             CccccceEEEeecCCCCch-----------------------hHHHHHHHHHhhC--CCCceEEEeCcHHHHHHhhc
Q 020972           91 NRSAVRAVCLAVSGVNHPT-----------------------DQQRILNWLRDIF--PGNVRLYVHNDALAALASGT  142 (319)
Q Consensus        91 ~~~~i~~Igig~pG~~~~~-----------------------~~~~l~~~L~~~~--~~~~pv~v~NDa~aa~~g~~  142 (319)
                      ...+ .-+|+.++=|....                       -..-|.+.++++.  +- ..+.|.||+.+.+++.+
T Consensus       127 ~~~~-lplGfTFSFP~~Q~sl~~g~Li~wtKgf~~~~~~g~dv~~lL~~al~r~~~~~v-~v~aivNDTvgTL~s~a  201 (205)
T d1v4sa1         127 KHKK-LPLGFTFSFPVRHEDIDKGILLNWTKGFKASGAEGNNVVGLLRDAIKRRGDFEM-DVVAMVNDTVATMISCY  201 (205)
T ss_dssp             TTCC-CEEEEEECSCEEEEETTEEEECCCCTTCCCBTCTTSBHHHHHHHHHTTTCSCCC-EEEEEECHHHHHHHHHH
T ss_pred             CCCc-cccEEEEcCccccCCCCcEEEEEcccccccCccccchHHHHHHHHHHhcCCCCc-eEEEEEEchHHHHHhhh
Confidence            3222 23444443332210                       0235666676653  31 35788899998877654

>d3bzka5 c.55.3.13 (A:325-473) Transcriptional accessory factor Tex {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Tex RuvX-like domain-like
domain: Transcriptional accessory factor Tex
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.26  E-value=0.0018  Score=50.75  Aligned_cols=98  Identities=16%  Similarity=0.072  Sum_probs=62.8

Q ss_pred             cEEEEEEcC-ccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceEEE
Q 020972           22 EVILGLDGG-TTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCL  100 (319)
Q Consensus        22 ~~~lGIDiG-GTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Igi  100 (319)
                      +.+||+|=| .|.++++++|.         +|+++....+-+.+.. ...++..+.    +.+++++...   ++.+||-
T Consensus         5 ~~vlg~DPg~r~gck~AvlD~---------~G~vld~~viyp~~~~-~~~~~a~~~----l~~li~k~~p---~vIaIGN   67 (149)
T d3bzka5           5 RATLGLDPGLRTGVKVAVVDA---------TGKLLDTATVYPHAPK-NQWDQTLAV----LAALCAKHQV---ELIAIGN   67 (149)
T ss_dssp             CCEEEEECCSTTCEEEEEECT---------TSCEEEEEEECCSTTT-CCHHHHHHH----HHHHHHHTTC---CEEEEES
T ss_pred             ceEEEECCCcccccEEEEECC---------CCCEEEEEEEecCCcH-HHHHHHHHH----HHHHHHHcCC---eEEEECC
Confidence            579999999 89999999999         9999998877544432 234444444    4455555432   3444442


Q ss_pred             eecCCCCchhHHHHHHHHHhh-CCCCceEEEeCcHHHHHHh
Q 020972          101 AVSGVNHPTDQQRILNWLRDI-FPGNVRLYVHNDALAALAS  140 (319)
Q Consensus       101 g~pG~~~~~~~~~l~~~L~~~-~~~~~pv~v~NDa~aa~~g  140 (319)
                         |.-..+...-+.+.+++. ... +++.+.||+-+..+.
T Consensus        68 ---gTasre~~~~v~~l~~~~~~~~-i~~~iV~e~gAsvYs  104 (149)
T d3bzka5          68 ---GTASRETDKLAGELIKKYPGMK-LTKIMVSEAGASVYS  104 (149)
T ss_dssp             ---STTHHHHHHHHHHHHHHCGGGC-CEEEEECCTTHHHHH
T ss_pred             ---CccHHHHHHHHHHHHHhCCCCC-cEEEEEeccchhhhh
Confidence               333333344456666553 212 788999999887775

>d1ig8a1 c.55.1.3 (A:18-224) Hexokinase {Baker's yeast (Saccharomyces cerevisiae), pII [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Hexokinase
domain: Hexokinase
species: Baker's yeast (Saccharomyces cerevisiae), pII [TaxId: 4932]

Probab=97.17  E-value=0.0027  Score=52.49  Aligned_cols=118  Identities=10%  Similarity=0.042  Sum_probs=69.2

Q ss_pred             cccCCCcEEEEEEcCccceeEEEEeCccCCCCCCCCCCe-EEE--EecCCCCccccCHHHHHHHHHHHHHHHHHHcCCC-
Q 020972           16 EESGGREVILGLDGGTTSTVCICMPVISMSDSLPDPLPV-LAR--AAAGCSNHNSVGEDAARETIEKVMADALLKSGSN-   91 (319)
Q Consensus        16 ~~~~m~~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~i-l~~--~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~-   91 (319)
                      ++....+.+|+||+|||+.|++++.+.+       ++.. ..+  .+.+..-....+.++..+.|++.+.+++++.... 
T Consensus        57 PtG~E~G~flalDlGGTnlRv~~V~L~g-------~~~~~~~~~~~~ip~~~~~~~~~~~lFd~iA~~i~~f~~e~~~~~  129 (207)
T d1ig8a1          57 PTGKESGDFLAIDLGGTNLRVVLVKLGG-------DRTFDTTQSKYRLPDAMRTTQNPDELWEFIADSLKAFIDEQFPQG  129 (207)
T ss_dssp             CCSCCEEEEEEEEECSSEEEEEEEEEES-------SSCEEEEEEEEECCTTGGGCSCTHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             CCCCccceEEEEEecCceEEEEEEEEcC-------CCceEEeeeeeeCCHHHhcCCcHHHHHHHHHHHHHHHHHHhcccc
Confidence            4555567899999999999999999821       2221 222  2222211112356788899999999999875432 


Q ss_pred             cccc--ceEEEeecCCCCc-h--------h------------HHHHHHHHHhh-CCCCceEEEeCcHHHHHHhh
Q 020972           92 RSAV--RAVCLAVSGVNHP-T--------D------------QQRILNWLRDI-FPGNVRLYVHNDALAALASG  141 (319)
Q Consensus        92 ~~~i--~~Igig~pG~~~~-~--------~------------~~~l~~~L~~~-~~~~~pv~v~NDa~aa~~g~  141 (319)
                      ..+.  .|+.+++|---.. .        +            ..-|.+.|+++ ++ ...+.|-||..+.+++.
T Consensus       130 ~~~~l~lGfTFSFP~~Q~~i~~g~Li~wtKgF~~~~~~G~dv~~lL~~al~r~~~~-v~v~aivNDTvgtL~a~  202 (207)
T d1ig8a1         130 ISEPIPLGFTFSFPASQNKINEGILQRWTKGFDIPNIENHDVVPMLQKQITKRNIP-IEVVALINDTTGTLVAS  202 (207)
T ss_dssp             CCSCEEEEEECCSSEECSBTTCCEECCCCTTCCCTTCTTSBHHHHHHHHHHHTTCC-EEEEEEECHHHHHHHHH
T ss_pred             cCCcceeEEEEeceeecCCCCcEEEEeeeccccccCcCCCcHHHHHHHHHHHcCCC-ceEEEEEEhhHHHHHhh
Confidence            1222  3555555542111 0        0            12355555544 22 12478899999877764

>d1g99a2 c.55.1.2 (A:198-398) Acetate kinase {Archaeon Methanosarcina thermophila [TaxId: 2210]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Acetokinase-like
domain: Acetate kinase
species: Archaeon Methanosarcina thermophila [TaxId: 2210]

Probab=96.77  E-value=0.016  Score=47.13  Aligned_cols=137  Identities=12%  Similarity=0.063  Sum_probs=85.3

Q ss_pred             CCeEEEEECccceeEeEecCCcEEee-CCC----CCccCCcCChHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHcCCCC
Q 020972          146 LHGCVLIAGTGTIAYGFTEDGRDARA-AGA----GPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSS  220 (319)
Q Consensus       146 ~~~v~v~~GTGigg~gii~dG~~~ra-Gg~----Ghl~gd~Gsa~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~~  220 (319)
                      -+.|+.-+|.|+..+ -+.||+.+-. =|+    |-+.+.                  ..|..++..+. .+.+..+. +
T Consensus         5 ~~lIv~HLG~G~Sv~-Ai~~GksvDtsmG~tpleGl~m~t------------------RsGdldp~~~~-~l~~~~g~-s   63 (201)
T d1g99a2           5 TKIITCHLGNGSSIT-AVEGGKSVETSMGFTPLEGLAMGT------------------RCGSIDPAIVP-FLMEKEGL-T   63 (201)
T ss_dssp             CEEEEEEESSSEEEE-EEETTEEEEESCCSSTTSSSCCSS------------------CCCSCCTTHHH-HHHHHHTC-C
T ss_pred             ccEEEEEeCCCceee-eeeCCEEEEeCCCCCCccCCCCCC------------------CCCCCChHHHH-HHHHHcCC-C
Confidence            468899999998665 4589998752 122    111111                  11222222222 22233332 4


Q ss_pred             hhhHHHHhccCCChHH---HhchhHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhcccccccEE
Q 020972          221 PDELIGWTYVDPSWAR---IAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEGVTYTKILKEKVPLL  297 (319)
Q Consensus       221 ~~~l~~~~~~~~~~~~---~a~~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~la~li~~l~~~~~~~~~~~~~~~~~~iv  297 (319)
                      .+++...++.+.....   +....+.|.+++++||+.|+..++-++..+++.|..+...|+-             ..-||
T Consensus        64 ~~ei~~~Ln~~sGL~g~sG~s~D~R~v~~~~~~Gd~~A~la~d~~~yri~k~Iga~~a~Lgg-------------vDaiV  130 (201)
T d1g99a2          64 TREIDTLMNKKSGVLGVSGLSNDFRDLDEAASKGNRKAELALEIFAYKVKKFIGEYSAVLNG-------------ADAVV  130 (201)
T ss_dssp             HHHHHHHHHHSCHHHHHHSSCSCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHTTS-------------CSEEE
T ss_pred             HHHHHHHHhhccCcEeecCCCCcHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHhccCC-------------CCEEE
Confidence            4455444443221101   1123578889999999999999999999999999999988863             24799


Q ss_pred             EEcchhhhcHHHHHHHHhhc
Q 020972          298 MENILFLLSWLVVFLKLIEG  317 (319)
Q Consensus       298 l~Gg~~~~~~~~~~~~~~~~  317 (319)
                      +.||+- .+...+..+++++
T Consensus       131 fTGGig-en~~~vR~~i~~~  149 (201)
T d1g99a2         131 FTAGIG-ENSASIRKRILTG  149 (201)
T ss_dssp             EEHHHH-HHCHHHHHHHHTT
T ss_pred             Eecccc-cccHHHHHHHHhH
Confidence            999999 5555677777664

>d2e1za2 c.55.1.2 (A:193-397) Propionate kinase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Acetokinase-like
domain: Propionate kinase
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.32  E-value=0.026  Score=46.14  Aligned_cols=141  Identities=13%  Similarity=0.083  Sum_probs=83.0

Q ss_pred             CCeEEEEECccceeEeEecCCcEEe-eCCCCCccCCcCChHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHcCCCChhhH
Q 020972          146 LHGCVLIAGTGTIAYGFTEDGRDAR-AAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDEL  224 (319)
Q Consensus       146 ~~~v~v~~GTGigg~gii~dG~~~r-aGg~Ghl~gd~Gsa~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~~~~~l  224 (319)
                      .+.|+.-+|.|+.-+ -+.||+.+- .-|+--+-|-.-+              ...|..++..+ -.+.+..+. +.+++
T Consensus         5 ~n~Iv~HLG~G~Si~-Ai~~GksvDtsmG~tpleGl~m~--------------tRsG~idp~~~-~~l~~~~~~-s~~e~   67 (205)
T d2e1za2           5 SGLIVAHLGNGASIC-AVRNGQSVDTSMGMTPLEGLMMG--------------TRSGDVDFGAM-AWIAKETGQ-TLSDL   67 (205)
T ss_dssp             CEEEEEEESSSEEEE-EEETTEEEEESCCSSTTSSSCCS--------------SCCCSCCHHHH-HHHHHHHCC-CHHHH
T ss_pred             CcEEEEEeCCCeeee-eeeCCEEEEcCCCCCcccCCCCC--------------CCCCCCChHHH-HHHHHHcCC-CHHHH
Confidence            468899999998665 457999875 2222111110000              00111111111 122222232 44444


Q ss_pred             HHHhccCCCh---HHHhchhHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhcccccccEEEEcc
Q 020972          225 IGWTYVDPSW---ARIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEGVTYTKILKEKVPLLMENI  301 (319)
Q Consensus       225 ~~~~~~~~~~---~~~a~~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~la~li~~l~~~~~~~~~~~~~~~~~~ivl~Gg  301 (319)
                      ...++.+...   ..+....+.|.+++++||+.|+..++-++..+++.|..+...|+-             ..-|||.||
T Consensus        68 ~~~Ln~~sGl~g~sG~s~D~R~l~~~~~~gd~~A~la~d~~~yri~k~Iga~~a~Lgg-------------vDaiVFTgG  134 (205)
T d2e1za2          68 ERVVNKESGLLGISGLSSDLRVLEKAWHEGHERARLAIKTFVHRIARHIAGHAASLHR-------------LDGIIFTGG  134 (205)
T ss_dssp             HHHHHHSCHHHHHHSSCSCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTTCSS-------------CCEEEEEHH
T ss_pred             HHHHhhccCceeeeCCcchHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHhhcC-------------CCEEEEeCc
Confidence            4444432211   011124677889999999999999999999999999999988762             247999999


Q ss_pred             hhhhcHHHHHHHHhhc
Q 020972          302 LFLLSWLVVFLKLIEG  317 (319)
Q Consensus       302 ~~~~~~~~~~~~~~~~  317 (319)
                      +-. +...+...++|+
T Consensus       135 IGE-n~~~vR~~i~~~  149 (205)
T d2e1za2         135 IGE-NSVLIRQLVIEH  149 (205)
T ss_dssp             HHH-HCHHHHHHHHHT
T ss_pred             ccc-ccHHHHHHHHHH
Confidence            994 444566666653

>d1saza2 c.55.1.2 (A:173-375) butyrate kinase 2 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Acetokinase-like
domain: butyrate kinase 2
species: Thermotoga maritima [TaxId: 2336]

Probab=96.02  E-value=0.11  Score=42.02  Aligned_cols=64  Identities=16%  Similarity=0.072  Sum_probs=52.5

Q ss_pred             hHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhcccccccEEEEcchhhhcHHHHHHHHhhc
Q 020972          241 VPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEGVTYTKILKEKVPLLMENILFLLSWLVVFLKLIEG  317 (319)
Q Consensus       241 ~~~v~~~A~~GD~~A~~il~~a~~~Lg~~la~li~~l~~~~~~~~~~~~~~~~~~ivl~Gg~~~~~~~~~~~~~~~~  317 (319)
                      .+.|.+.+++||+.|+.+++-.+..+++.|..+...++=  +          -.-|||.||+. .+.+.+...++|+
T Consensus        84 ~rev~~~~~~Gd~~A~lA~d~~~y~i~K~Iga~~a~L~G--~----------vDaIvfTgGIg-en~~~vr~~I~~~  147 (203)
T d1saza2          84 AREVVRRIKQGDEWAKRVYRAMAYQIAKWIGKMAAVLKG--E----------VDFIVLTGGLA-HEKEFLVPWITKR  147 (203)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHTTT--C----------CSEEEEEEGGG-GCTTTHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhCC--C----------CCEEEECCccc-cCcHHHHHHHHHh
Confidence            578999999999999999999999999999999988852  1          24799999998 5555666666553

>d3bexa1 c.55.1.13 (A:1-118) Type III pantothenate kinase, CoaX {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: CoaX-like
domain: Type III pantothenate kinase, CoaX
species: Thermotoga maritima [TaxId: 2336]

Probab=94.57  E-value=0.08  Score=38.68  Aligned_cols=79  Identities=19%  Similarity=0.167  Sum_probs=47.7

Q ss_pred             EEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceEEEee
Q 020972           23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV  102 (319)
Q Consensus        23 ~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Igig~  102 (319)
                      |.|.||+|-|++++++++.          ++++...+..+...  ...++....+...    +.   .....+..+.++.
T Consensus         1 M~L~IDIGNT~ik~~l~~~----------~~l~~~~~~~~~~~--~~~~~~~~~~~~~----~~---~~~~~i~~~~~ss   61 (118)
T d3bexa1           1 MYLLVDVGNTHSVFSITED----------GKTFRRWRLSTGVF--QTEDELFSHLHPL----LG---DAMREIKGIGVAS   61 (118)
T ss_dssp             EEEEEEECSSEEEEEEESS----------SSSCEEEEEECCTT--CCHHHHHHHHHHH----HG---GGGGGEEEEEEEE
T ss_pred             CEEEEEECCCeEEEEEEEC----------CEEEEEEEEccCcc--ccHHHHHHHHHHH----Hh---hhhcccccceeec
Confidence            5799999999999999984          67777766654332  3556554433332    21   1223455554443


Q ss_pred             cCCCCchhHHHHHHHHHhhCC
Q 020972          103 SGVNHPTDQQRILNWLRDIFP  123 (319)
Q Consensus       103 pG~~~~~~~~~l~~~L~~~~~  123 (319)
                        .+ +.....+...+++.++
T Consensus        62 --Vv-p~~~~~~~~~~~~~~~   79 (118)
T d3bexa1          62 --VV-PTQNTVIERFSQKYFH   79 (118)
T ss_dssp             --SC-HHHHHHHHHHHHHHHS
T ss_pred             --cc-hhHHHHHHHHHHHhcc
Confidence              33 3445567777777765

>d1nu0a_ c.55.3.8 (A:) Hypothetical protein YqgF (RuvX) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Putative Holliday junction resolvase RuvX
domain: Hypothetical protein YqgF (RuvX)
species: Escherichia coli [TaxId: 562]

Probab=94.28  E-value=0.1  Score=39.69  Aligned_cols=90  Identities=12%  Similarity=0.092  Sum_probs=54.9

Q ss_pred             CCcEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceEE
Q 020972           20 GREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVC   99 (319)
Q Consensus        20 m~~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Ig   99 (319)
                      |++.+||||.|.-+|=+++.|.         .+.+-.-...-..    .+.+..++.|.+.+++    .     ++..|-
T Consensus         1 m~griLgiD~G~kriGvAvsd~---------~~~~a~pl~~i~~----~~~~~~~~~l~~i~~e----~-----~~~~iV   58 (138)
T d1nu0a_           1 MSGTLMAFDFGTKSIGVAVGQR---------ITGTARPLPAIKA----QDGTPDWNIIERLLKE----W-----QPDEII   58 (138)
T ss_dssp             CCCEEEEEECCSSEEEEEEEET---------TTTEEEEEEEEEE----ETTEECHHHHHHHHHH----H-----CCSEEE
T ss_pred             CCCcEEEEEeCCCEEEEEEeCC---------CCCccccceeeec----ccchhhHHHHHHHhhc----c-----CccEEE
Confidence            6788999999999999999997         5544321111010    1112233444444433    2     567888


Q ss_pred             EeecCCCCc--h----hHHHHHHHHHhhCCCCceEEEeCc
Q 020972          100 LAVSGVNHP--T----DQQRILNWLRDIFPGNVRLYVHND  133 (319)
Q Consensus       100 ig~pG~~~~--~----~~~~l~~~L~~~~~~~~pv~v~ND  133 (319)
                      ||+|=-.+.  .    .-..+.+.|++.++  +||.+-+.
T Consensus        59 vG~P~~~~g~~~~~~~~v~~f~~~L~~~~~--i~V~~~DE   96 (138)
T d1nu0a_          59 VGLPLNMDGTEQPLTARARKFANRIHGRFG--VEVKLHDE   96 (138)
T ss_dssp             EEEEECTTSCBCHHHHHHHHHHHHHHHHHC--CCEEEEEE
T ss_pred             eecccccccchHHHHHHHHHHHHHHhhccC--CCeEEEec
Confidence            999843221  1    12467788888887  89877643

>d1okja1 c.55.1.9 (A:1-106) Hypothetical protein YeaZ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: YeaZ-like
domain: Hypothetical protein YeaZ
species: Escherichia coli [TaxId: 562]

Probab=93.49  E-value=0.77  Score=32.76  Aligned_cols=95  Identities=17%  Similarity=0.076  Sum_probs=66.0

Q ss_pred             EEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceEEEeec
Q 020972           24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVS  103 (319)
Q Consensus        24 ~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Igig~p  103 (319)
                      +|+||--+..+.+++++          +++++.+......+    ..    +.+...+++++++++.+.++|..|.++. 
T Consensus         2 iLaIdTS~~~~sval~~----------~~~i~~~~~~~~~~----h~----~~l~~~i~~~l~~~~~~~~di~~i~v~~-   62 (106)
T d1okja1           2 ILAIDTATEACSVALWN----------DGTVNAHFELCPRE----HT----QRILPMVQDILTTSGTSLTDINALAYGR-   62 (106)
T ss_dssp             EEEEECSSSEEEEEEEE----------TTEEEEEEEECCSS----TT----TTHHHHHHHHHHHTTCCGGGCCEEEEEE-
T ss_pred             EEEEECCCcceEEEEEE----------CCEEEEEEEEccHH----HH----HHHHHHHHHHHHhcCCcceeeeEEEEee-
Confidence            78999999999999987          47777665432211    11    2466678889999999999999887753 


Q ss_pred             CCCCchh---HHHHHHHHHhhCCCCceEEEeCcHHHHHH
Q 020972          104 GVNHPTD---QQRILNWLRDIFPGNVRLYVHNDALAALA  139 (319)
Q Consensus       104 G~~~~~~---~~~l~~~L~~~~~~~~pv~v~NDa~aa~~  139 (319)
                      ||.....   ...+.+-|...++  .|++=-|--.+-+.
T Consensus        63 GPGsfTglRig~s~akgla~~~~--ip~~~v~sl~~la~   99 (106)
T d1okja1          63 GPGSFTGVRIGIGIAQGLALGAE--LPMIGVSTLMTMAQ   99 (106)
T ss_dssp             ESSCHHHHHHHHHHHHHHHHHTT--CCEEEEEHHHHHHH
T ss_pred             ccCccccchHHHHHHHHHHHHcC--CCEEEeCHHHHHHH
Confidence            5544432   3456666777776  89888886665444

>d1e4ft1 c.55.1.1 (T:7-199) Cell division protein FtsA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Cell division protein FtsA
species: Thermotoga maritima [TaxId: 2336]

Probab=93.18  E-value=0.15  Score=40.65  Aligned_cols=77  Identities=10%  Similarity=0.077  Sum_probs=51.3

Q ss_pred             cEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCcc---ccCHHHHHHHHHHHHHHHHHHcCCCccccceE
Q 020972           22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHN---SVGEDAARETIEKVMADALLKSGSNRSAVRAV   98 (319)
Q Consensus        22 ~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~---~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~I   98 (319)
                      .|+.++|+|.+|+++++....      +.+-+++.....++....   =.+.+.+.+.|.++++++.++++....  ..+
T Consensus         2 ~~~~aiDIGs~kI~~~v~~~~------~~~~~iig~~~~~s~Gi~~G~I~d~~~~~~~I~~~I~~aE~~a~~~i~--~~v   73 (193)
T d1e4ft1           2 VFYTSIDIGSRYIKGLVLGKR------DQEWEALAFSSVKSRGLDEGEIKDAIAFKESVNTLLKELEEQLQKSLR--SDF   73 (193)
T ss_dssp             EEEEEEEECSSEEEEEEEEEE------TTEEEEEEEEEEECCSEETTEESCHHHHHHHHHHHHHHHHHHHTSCCC--SCE
T ss_pred             cEEEEEEcCCCEEEEEEEEEc------CCcEEEEEEEEEecCCccCCeEEeHHHHHHHHHHHHHHHHHHcCCCee--eEE
Confidence            489999999999999887641      013355665555432211   146788889999999999888876431  234


Q ss_pred             EEeecCCC
Q 020972           99 CLAVSGVN  106 (319)
Q Consensus        99 gig~pG~~  106 (319)
                      -++++|..
T Consensus        74 ~v~~~~~~   81 (193)
T d1e4ft1          74 VISFSSVS   81 (193)
T ss_dssp             EEEECCTT
T ss_pred             EEEEcCce
Confidence            56666653

>d2d0oa2 c.55.1.6 (A:1-92,A:255-403) Diol dehydratase-reactivating factor large subunit DdrA {Klebsiella oxytoca [TaxId: 571]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ATPase domain of dehydratase reactivase alpha subunit
domain: Diol dehydratase-reactivating factor large subunit DdrA
species: Klebsiella oxytoca [TaxId: 571]

Probab=93.08  E-value=0.15  Score=41.30  Aligned_cols=72  Identities=18%  Similarity=0.120  Sum_probs=49.1

Q ss_pred             CcEEEEEEcCccceeEEEEeCccCCCCCCCCCC--eEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceE
Q 020972           21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLP--VLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAV   98 (319)
Q Consensus        21 ~~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~--il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~I   98 (319)
                      |+|+.|||||-+.|.++|....       +.|+  ++.+...+++..  .+-.+-+.-+.+.+++++++.+.+.+++.-|
T Consensus         1 M~~IaGiDIGNstTEvala~v~-------~~g~~~fl~S~i~~TTGi--KGT~~Ni~Gv~~aL~~al~k~g~~~~d~~lI   71 (241)
T d2d0oa2           1 MRYIAGIDIGNSSTEVALATLD-------EAGALTITHSALAETTGI--KGTLRNVFGIQEALALVARGAGIAVSDISLI   71 (241)
T ss_dssp             CEEEEEEEECSSEEEEEEEEEC-------TTCCEEEEEEEEEECCSS--TTSTTHHHHHHHHHHHHHHHHTCCGGGEEEE
T ss_pred             CceEEEEecCcchhhhheeeec-------CCCcEEEEeccccccccc--cccHHHHHHHHHHHHHHHHHcCCCHHHhhee
Confidence            3699999999999999998751       0344  455555555433  1223334556777888899999888887766


Q ss_pred             EEe
Q 020972           99 CLA  101 (319)
Q Consensus        99 gig  101 (319)
                      -+-
T Consensus        72 riN   74 (241)
T d2d0oa2          72 RIN   74 (241)
T ss_dssp             EEE
T ss_pred             eec
Confidence            553

>d1vhxa_ c.55.3.8 (A:) Hypothetical protein YrrK (RuvX) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Putative Holliday junction resolvase RuvX
domain: Hypothetical protein YrrK (RuvX)
species: Bacillus subtilis [TaxId: 1423]

Probab=91.97  E-value=0.15  Score=38.80  Aligned_cols=93  Identities=16%  Similarity=0.141  Sum_probs=55.4

Q ss_pred             EEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceEEEee
Q 020972           23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV  102 (319)
Q Consensus        23 ~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Igig~  102 (319)
                      .+||||.|..+|=+++.|.         .+.+..-...-..+.  ...+..+..|.+.    +++     .++..+-||+
T Consensus         3 riLgiD~G~kriGvAisd~---------~~~~a~pl~~i~~~~--~~~~~~~~~l~~i----i~e-----~~i~~iViGl   62 (140)
T d1vhxa_           3 RILGLDLGTKTLGVALSDE---------MGWTAQGIETIKINE--AEGDYGLSRLSEL----IKD-----YTIDKIVLGF   62 (140)
T ss_dssp             EEEEEEECSSEEEEEEECT---------TSSSEEEEEEEECBG--GGTBCCHHHHHHH----HTT-----SEEEEEEEEC
T ss_pred             eEEEEEeCCCEEEEEEecC---------CCCcccceeeEeecc--cccchHHHHHHHH----HHh-----hccceEEEec
Confidence            4999999999999999987         555433222111111  1122223344443    332     3688899999


Q ss_pred             cCCCC----chh--HHHHHHHHHhhCCCCceEEEeCcHHHH
Q 020972          103 SGVNH----PTD--QQRILNWLRDIFPGNVRLYVHNDALAA  137 (319)
Q Consensus       103 pG~~~----~~~--~~~l~~~L~~~~~~~~pv~v~NDa~aa  137 (319)
                      |=-.+    +..  ...+...|++.++  .||..-+.....
T Consensus        63 P~~~dg~~~~~~~~~~~f~~~l~~~~~--i~V~~~DEr~TS  101 (140)
T d1vhxa_          63 PKNMNGTVGPRGEASQTFAKVLETTYN--VPVVLWDERLTT  101 (140)
T ss_dssp             CCCBTTBCCHHHHHHHHHHHHHHHHHC--SCEEEECCSSCH
T ss_pred             ccccCCcchhHHHHHHHHHHHhccCCC--ccEEEeecccCH
Confidence            93222    211  2467778888887  888887765543

>d1iv0a_ c.55.3.8 (A:) Hypothetical protein, YqgF homologue {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Putative Holliday junction resolvase RuvX
domain: Hypothetical protein, YqgF homologue
species: Thermus thermophilus [TaxId: 274]

Probab=90.97  E-value=1.2  Score=31.25  Aligned_cols=81  Identities=10%  Similarity=0.047  Sum_probs=51.4

Q ss_pred             EEEEEcCccceeEEEEeCccCCCCCCCCCCe---EEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceEEE
Q 020972           24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPV---LARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCL  100 (319)
Q Consensus        24 ~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~i---l~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Igi  100 (319)
                      +||+|.|..+|=+++.|.         .+.+   +....       ..+.+..++.|.+.+++.         ++..+-|
T Consensus         3 iLglD~G~kriGiAisd~---------~~~~a~pl~~i~-------~~~~~~~~~~l~~ii~e~---------~i~~iVv   57 (98)
T d1iv0a_           3 VGALDVGEARIGLAVGEE---------GVPLASGRGYLV-------RKTLEEDVEALLDFVRRE---------GLGKLVV   57 (98)
T ss_dssp             EEEEEESSSEEEEEEECS---------CCSSCCCEEEEE-------CCCHHHHHHHHHHHHHHH---------TCCEEEE
T ss_pred             EEEEEcCCCEEEEEEecC---------CCCeEcceEEEE-------CCCchHHHHHHHHHHHhh---------ccceeEc
Confidence            899999999999999997         4432   22221       124455556666655542         5778889


Q ss_pred             eecCCCCc------hhHHHHHHHHHhhCCCCceEEEeC
Q 020972          101 AVSGVNHP------TDQQRILNWLRDIFPGNVRLYVHN  132 (319)
Q Consensus       101 g~pG~~~~------~~~~~l~~~L~~~~~~~~pv~v~N  132 (319)
                      |+|=-.+-      ..-..+.+.|++ ++  +||..-+
T Consensus        58 GlP~~~dG~~~~~~~~v~~f~~~L~~-~~--lpv~~~D   92 (98)
T d1iv0a_          58 GLPLRTDLKESAQAGKVLPLVEALRA-RG--VEVELWD   92 (98)
T ss_dssp             ECCCCCCSSSCCCSSTTHHHHHHHHH-TT--CEEEEEC
T ss_pred             ccccccCCCcCHHHHHHHHHHHHHhh-CC--CCEEEEc
Confidence            99943221      123567777865 45  8987654

>d1t6ca1 c.55.1.8 (A:7-132) Exopolyphosphatase Ppx {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Ppx/GppA phosphatase
domain: Exopolyphosphatase Ppx
species: Aquifex aeolicus [TaxId: 63363]

Probab=89.55  E-value=0.99  Score=33.26  Aligned_cols=105  Identities=10%  Similarity=0.034  Sum_probs=64.8

Q ss_pred             CCCcEEEEEEcCccceeEEEEeCccCCCCCCCCC--CeEEEEecCCC---Ccc---ccCHHHHHHHHHHHHHHHH---HH
Q 020972           19 GGREVILGLDGGTTSTVCICMPVISMSDSLPDPL--PVLARAAAGCS---NHN---SVGEDAARETIEKVMADAL---LK   87 (319)
Q Consensus        19 ~m~~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G--~il~~~~~~~~---~~~---~~~~~~~~~~i~~~i~~~l---~~   87 (319)
                      |||+ +-.||+|...++..+++..        ++  .++.+.+.+..   ...   ..+ ++.++++.++++++.   ++
T Consensus         1 ~mmr-iavIDIGSNsirl~I~~~~--------~~~~~~l~~~~~~~~Lg~~~~~~g~ls-~~~i~~~~~~l~~f~~~~~~   70 (126)
T d1t6ca1           1 PIMR-VASIDIGSYSVRLTIAQIK--------DGKLSIILERGRITSLGTKVKETGRLQ-EDRIEETIQVLKEYKKLIDE   70 (126)
T ss_dssp             CCEE-EEEEEECSSEEEEEEEEEE--------TTEEEEEEEEEEECCTTTTHHHHSSCC-HHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCE-EEEEEEccceEEEEEEEec--------CCcceeeeeeeEEEEcccCccccCCCC-HHHHHHHHHHHHHHHHHHHh
Confidence            6775 7889999999999999872        22  33344433211   000   012 234555555555544   34


Q ss_pred             cCCCccccceEEEeecCCCCchhHHHHHHHHHhhCCCCceEEEeCcHHHHHH
Q 020972           88 SGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALA  139 (319)
Q Consensus        88 ~~~~~~~i~~Igig~pG~~~~~~~~~l~~~L~~~~~~~~pv~v~NDa~aa~~  139 (319)
                      .++  +++  .+++.+.+=+..+...+.+.+++.++  .++.|-+.-.=|.+
T Consensus        71 ~~v--~~~--~~vaTsA~R~A~N~~~~~~~i~~~tg--i~i~Iisg~eEa~l  116 (126)
T d1t6ca1          71 FKV--ERV--KAVATEAIRRAKNAEEFLERVKREVG--LVVEVITPEQEGRY  116 (126)
T ss_dssp             TTC--SEE--EEEECHHHHTSTTHHHHHHHHHHHTC--CCEEECCHHHHHHH
T ss_pred             cCc--cce--EEehhHHHHhCcCHHHHHHHHHHHHC--CCeEEeCHHHHHHH
Confidence            443  233  45677776555667789999999997  88988887764433

>d1nbwa2 c.55.1.6 (A:2-91,A:257-405) ATPase domain of the glycerol dehydratase reactivase alpha subunit {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ATPase domain of dehydratase reactivase alpha subunit
domain: ATPase domain of the glycerol dehydratase reactivase alpha subunit
species: Klebsiella pneumoniae [TaxId: 573]

Probab=89.50  E-value=0.46  Score=39.39  Aligned_cols=74  Identities=18%  Similarity=0.169  Sum_probs=48.5

Q ss_pred             EEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceEEEee
Q 020972           23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV  102 (319)
Q Consensus        23 ~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Igig~  102 (319)
                      .+.|+|+|.||+++++.....+      .=+++.....++... . +.-.=++.+.+.|++++++++....++..+-+--
T Consensus         2 ii~glDIGtski~~~v~~~~~~------~~~ilg~g~~~s~Gi-K-G~I~ni~~~~~aI~~av~~A~~~~~~i~~i~in~   73 (239)
T d1nbwa2           2 LIAGIDIGNATTEVALASDYPQ------ARAFVASGIVATTGM-K-GTRDNIAGTLAALEQALAKTPWSMSDVSRIYLNE   73 (239)
T ss_dssp             EEEEEEECSSEEEEEEEECBTT------BCCCCEEEEEECCSS-T-TSGGGHHHHHHHHHHHHTTSSCCGGGEEEEEEEE
T ss_pred             EEEEEEcCCCeEEEEEEEEcCC------CEEEEEEEeecCCCC-c-ceEECHHHHHHHHHHHHHHhccccccceEEEecC
Confidence            5899999999999999876211      225677666654433 1 3222245567777888888887777777665544


Q ss_pred             cC
Q 020972          103 SG  104 (319)
Q Consensus       103 pG  104 (319)
                      +.
T Consensus        74 a~   75 (239)
T d1nbwa2          74 AA   75 (239)
T ss_dssp             CC
T ss_pred             Cc
Confidence            33

>d2f9wa2 c.55.1.13 (A:1-114) Type III pantothenate kinase, CoaX {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: CoaX-like
domain: Type III pantothenate kinase, CoaX
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=88.93  E-value=2.2  Score=30.21  Aligned_cols=73  Identities=22%  Similarity=0.260  Sum_probs=42.9

Q ss_pred             EEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceEEEee
Q 020972           23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV  102 (319)
Q Consensus        23 ~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Igig~  102 (319)
                      |.|.||+|-|.+|+++++.          .+.+...+...      ......+.       +....   ..++..+.+  
T Consensus         1 M~LliDiGNT~iK~~~~~~----------~~~~~~~~~~~------~~~~~~~~-------~~~~~---~~~~~~v~i--   52 (114)
T d2f9wa2           1 MILELDCGNSLIKWRVIEG----------AARSVAGGLAE------SDDALVEQ-------LTSQQ---ALPVRACRL--   52 (114)
T ss_dssp             EEEEEEECSSCEEEEEEET----------TTEEEEEEEES------SHHHHHHH-------HHHTT---TSCEEEEEE--
T ss_pred             CEEEEEECCCeEEEEEEEC----------CeEEEEeeeec------ChHHHHHH-------Hhhhc---cCCCceEEE--
Confidence            5799999999999999985          45555544322      12222211       11111   124545443  


Q ss_pred             cCCCCchhHHHHHHHHHhhCC
Q 020972          103 SGVNHPTDQQRILNWLRDIFP  123 (319)
Q Consensus       103 pG~~~~~~~~~l~~~L~~~~~  123 (319)
                      +.++.+.....+.+.+++.+.
T Consensus        53 ssVv~~~~~~~l~~~~~~~~~   73 (114)
T d2f9wa2          53 VSVRSEQETSQLVARLEQLFP   73 (114)
T ss_dssp             EECSCHHHHHHHHHHHHHHSS
T ss_pred             EEecCHHHHHHHHHHHHHhcC
Confidence            445555556678888888876

>d1saza1 c.55.1.2 (A:1-172) butyrate kinase 2 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Acetokinase-like
domain: butyrate kinase 2
species: Thermotoga maritima [TaxId: 2336]

Probab=88.08  E-value=1.1  Score=35.10  Aligned_cols=93  Identities=15%  Similarity=-0.028  Sum_probs=51.0

Q ss_pred             CCcEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCC-c--cccCHHHHHHHHHHHHHHHHHHcCCCccccc
Q 020972           20 GREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSN-H--NSVGEDAARETIEKVMADALLKSGSNRSAVR   96 (319)
Q Consensus        20 m~~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~-~--~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~   96 (319)
                      || .+|.|..|.|++|++|+|.         +. .+.+....-.. .  ......+-.+.-.+.+.+++++.+.+.++|.
T Consensus         1 mm-kILViN~GSSSlK~alf~~---------~~-~~~~~~i~~~~~e~~~~~~i~d~~~~~~~~i~~~L~~~~~~~~~i~   69 (172)
T d1saza1           1 MF-RILTINPGSTSTKLSIFED---------ER-MVKMQNFSHSPDELGRFQKILDQLEFREKIARQFVEETGYSLSSFS   69 (172)
T ss_dssp             CC-EEEEEEECSSEEEEEEEET---------TE-EEEEEEEECCHHHHHTCSSGGGGHHHHHHHHHHHHHTTTCCGGGCS
T ss_pred             CC-EEEEEcCChHhheEEEEeC---------CC-ceeEEEEEEccccccccCcccchHHHHHHHHHHHHHHcCCChhcCe
Confidence            44 5899999999999999986         43 34433321100 0  0000000122335567778888888777888


Q ss_pred             eEE--EeecCCCCch---hHHHHHHHHHhhCC
Q 020972           97 AVC--LAVSGVNHPT---DQQRILNWLRDIFP  123 (319)
Q Consensus        97 ~Ig--ig~pG~~~~~---~~~~l~~~L~~~~~  123 (319)
                      +||  ++-.|.....   -...+.+.|++..+
T Consensus        70 avghRvvhgg~~~~~~~~v~~~v~~~l~~~~p  101 (172)
T d1saza1          70 AFVSRGGLLDPIPGGVYLVDGLMIKTLKSGKN  101 (172)
T ss_dssp             EEEEECCSCSCBCSSEEECCHHHHHHHHHTTT
T ss_pred             EEEECccCCCCCCCccEEECHHHHHHHHhcCC
Confidence            877  3333332111   02234556665443

>d1jcea1 c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Prokaryotic actin homolog MreB
species: Thermotoga maritima [TaxId: 2336]

Probab=87.23  E-value=4.1  Score=29.64  Aligned_cols=47  Identities=13%  Similarity=0.114  Sum_probs=34.5

Q ss_pred             cccceEEEeecCCCCchhHHHHHHHHHhhCCCCceEEEeCcHHHHHHhh
Q 020972           93 SAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASG  141 (319)
Q Consensus        93 ~~i~~Igig~pG~~~~~~~~~l~~~L~~~~~~~~pv~v~NDa~aa~~g~  141 (319)
                      ..+..+.|.+|-.-+......+++.-+.. +. ..+.+-|.--+|++|.
T Consensus        90 ~~~~~~VItVPa~f~~~qR~at~~Aa~~A-Gl-~vv~li~EPtAAAiGa  136 (137)
T d1jcea1          90 LFKPRVVIGVPIGITDVERRAILDAGLEA-GA-SKVFLIEEPMAAAIGS  136 (137)
T ss_dssp             SCCCEEEEEECTTCCHHHHHHHHHHHHHT-TC-SEEEEEEHHHHHHHHT
T ss_pred             ccccceEEEeecccCHHHHHHHHHHHHHc-CC-CEEEEeCCHHHHHhCC
Confidence            35667889999987766666666655443 42 5799999999999863