Citrus Sinensis ID: 020985

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------32
MATIRLIDIAVNFTDGMFKGIYHGKQCHASDIATVLSRAWSSGVDRIIVTGGSLEESKEALAIAETDGRLFCTVGVHPTRCKEFEESGDPEKHFQALLSLAKEGIEKGKVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATKLPMFLHMREAAADFCAIVERNKDRFTGGVTHSFTGSAEDRDKLLTFNMYIGINGCSLKTAENLDVVRGIPIERMMIETDSPYCEIKNAHAGISFVKSTWPSKKKEKYDQDSLVKGRNEPCLVRQVLEVVAGCKGINDIDQLSRTLYHNTCRVFFPQDLDSTADALLAGRRNTP
cccccEEEEEcccccccccccccccccccccHHHHHHHHHHccccEEEEEcccHHHHHHHHHHHHHccccEEEEccccccccccccccccHHHHHHHHHHHHHHcccccEEEEEEccccccccccccHHHHHHHHHHHHHHHHHccccEEEEEcccHHHHHHHHHHcccccccEEEEcccccHHHHHHHHHcccEEEEcccccccccccHHHHcccccccEEcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccHHHHHHHHcccccc
cccEEEEEEccccccHHHccccccccccHHHHHHHHHHHHHccccEEEEEccccccHHHHHHHHHHcccEEEEEEcccccHHcccccccHHHHHHHHHHHHHHHHccccEEEEEEEEEEccccccccHHHHHHHHHHHHHHHHHccccEEEEcccHHHHHHHHHHHcccccccEEEEEccccHHHHHHHHHcccEEEEccEEEcccccHHHHHcccHHHEEEEccccccccccccccccEEEcccccccccccccccEEcccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHcccccc
MATIRLIDIAVNFTdgmfkgiyhgkqchasdIATVLSRAWSSGVDRIIVTGGSLEESKEALAIAETdgrlfctvgvhptrckefeesgdpeKHFQALLSLAKEGIEKGKVVAIGecgldydrlhfcpseIQRKYFEKQFELAYATKLPMFLHMREAAADFCAIVERnkdrftggvthsftgsaedrDKLLTFNMYIGingcslktaenldvvrgipiermmietdspyceiknahaGISFvkstwpskkkekydqdslvkgrnepclVRQVLEVVAgckgindidqlsrtlyhntcrvffpqdldSTADALLAGRRNTP
MATIRLIDIAVNFTDGMFKGIYHGKQCHASDIATVLSRAWSSGVDRIIVTGGSLEESKEALAIAETDGRLFCTVGVHPTRCKEFEESGDPEKHFQALLSLAKEGIEKGKVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATKLPMFLHMREAAADFCAIVERNKDrftggvthsftgsaedrdKLLTFNMYIGingcslktaenlDVVRGIPIERMMIETDSPYCEIKNAHAGIsfvkstwpskkkekydqdslvkgrnepCLVRQVLEVVAGCKGINDIDQLSRTLYHNTCRVFFPQDLDSTADALLAGRRNTP
MATIRLIDIAVNFTDGMFKGIYHGKQCHASDIATVLSRAWSSGVDRIIVTGGSLEESKEALAIAETDGRLFCTVGVHPTRCKEFEESGDPEKHFQALLSLAKEGIEKGKVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATKLPMFLHMREAAADFCAIVERNKDRFTGGVTHSFTGSAEDRDKLLTFNMYIGINGCSLKTAENLDVVRGIPIERMMIETDSPYCEIKNAHAGISFVKSTWPSKKKEKYDQDSLVKGRNEPCLVRQVLEVVAGCKGINDIDQLSRTLYHNTCRVFFPQDLDSTADALLAGRRNTP
***IRLIDIAVNFTDGMFKGIYHGKQCHASDIATVLSRAWSSGVDRIIVTGGSLEESKEALAIAETDGRLFCTVGVHPTRCKEF********HFQALLSLAKEGIEKGKVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATKLPMFLHMREAAADFCAIVERNKDRFTGGVTHSFTGSAEDRDKLLTFNMYIGINGCSLKTAENLDVVRGIPIERMMIETDSPYCEIKNAHAGISFVKSTW************LVKGRNEPCLVRQVLEVVAGCKGINDIDQLSRTLYHNTCRVFFPQDLD**************
*ATIRLIDIAVNFTDGMFKGIYHGKQCHASDIATVLSRAWSSGVDRIIVTGGSLEESKEALAIAETDGRLFCTVGVHPTRCKEFEESGDPEKHFQALLSLAKEGIEKGKVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATKLPMFLHMREAAADFCAIVERNKDRFTGGVTHSFTGSAEDRDKLLTFNMYIGINGCSLKTAENLDVVRGIPIERMMIETDSPYCEIKNAHAGISFVKS*WPSKKKEKYDQDSLVKGRNEPCLVRQVLEVVAGCKGINDIDQLSRTLYHNTCRVFFPQDLDS*************
MATIRLIDIAVNFTDGMFKGIYHGKQCHASDIATVLSRAWSSGVDRIIVTGGSLEESKEALAIAETDGRLFCTVGVHPTRC*********EKHFQALLSLAKEGIEKGKVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATKLPMFLHMREAAADFCAIVERNKDRFTGGVTHSFTGSAEDRDKLLTFNMYIGINGCSLKTAENLDVVRGIPIERMMIETDSPYCEIKNAHAGISFVKST*************LVKGRNEPCLVRQVLEVVAGCKGINDIDQLSRTLYHNTCRVFFPQDLDSTADALLAGRRNTP
*ATIRLIDIAVNFTDGMFKGIYHGKQCHASDIATVLSRAWSSGVDRIIVTGGSLEESKEALAIAETDGRLFCTVGVHPTRCKEFEESGDPEKHFQALLSLAKEGIEKGKVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATKLPMFLHMREAAADFCAIVERNKDRFTGGVTHSFTGSAEDRDKLLTFNMYIGINGCSLKTAENLDVVRGIPIERMMIETDSPYCEIKNAHAGISFVKSTWPSKKKEKYDQDSLVKGRNEPCLVRQVLEVVAGCKGINDIDQLSRTLYHNTCRVFFPQDLDSTADALLAGR****
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MATIRLIDIAVNFTDGMFKGIYHGKQCHASDIATVLSRAWSSGVDRIIVTGGSLEESKEALAIAETDGRLFCTVGVHPTRCKEFEESGDPEKHFQALLSLAKEGIEKGKVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATKLPMFLHMREAAADFCAIVERNKDRFTGGVTHSFTGSAEDRDKLLTFNMYIGINGCSLKTAENLDVVRGIPIERMMIETDSPYCEIKNAHAGISFVKSTWPSKKKEKYDQDSLVKGRNEPCLVRQVLEVVAGCKGINDIDQLSRTLYHNTCRVFFPQDLDSTADALLAGRRNTP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query319 2.2.26 [Sep-21-2011]
Q640V9297 Putative deoxyribonucleas N/A no 0.924 0.993 0.521 2e-91
Q6P1N9297 Putative deoxyribonucleas yes no 0.924 0.993 0.511 2e-88
Q148G4297 Putative deoxyribonucleas yes no 0.924 0.993 0.508 6e-88
Q6P8M1295 Putative deoxyribonucleas yes no 0.921 0.996 0.506 7e-88
Q6GML7298 Putative deoxyribonucleas yes no 0.921 0.986 0.51 1e-82
Q9UUF1312 Deoxyribonuclease Tat-D O yes no 0.934 0.955 0.438 2e-71
P34220418 Deoxyribonuclease Tat-D O yes no 0.931 0.710 0.348 4e-52
Q8SW70273 Putative deoxyribonucleas yes no 0.811 0.948 0.360 3e-39
D0Z9R0260 Tat-linked quality contro yes no 0.789 0.969 0.324 1e-31
D4GGR2260 Tat-linked quality contro yes no 0.793 0.973 0.322 1e-30
>sp|Q640V9|TATD1_XENLA Putative deoxyribonuclease TATDN1 OS=Xenopus laevis GN=tatdn1 PE=2 SV=1 Back     alignment and function desciption
 Score =  335 bits (859), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 157/301 (52%), Positives = 219/301 (72%), Gaps = 6/301 (1%)

Query: 1   MATIRLIDIAVNFTDGMFKGIYHGKQCHASDIATVLSRAWSSGVDRIIVTGGSLEESKEA 60
           M+  R IDI +N TD MF+G+Y G + H  D A ++ RA  +GV + ++TGG+L ESKEA
Sbjct: 1   MSLYRFIDIGINLTDPMFRGLYRGTRKHQDDFADIIERAVRTGVQKFMITGGNLHESKEA 60

Query: 61  LAIAETDGRLFCTVGVHPTRCKEFEESGDPEKHFQALLSLAKEGIEKGKVVAIGECGLDY 120
           + +A+++ R + TVG HPTRC EFE+ GDP+++   L +L ++   KGKVVA+GECGLD+
Sbjct: 61  IQLAQSNDRFYSTVGCHPTRCGEFEQ-GDPDQYLAELQNLLEDN--KGKVVAVGECGLDF 117

Query: 121 DRLHFCPSEIQRKYFEKQFELAYATKLPMFLHMREAAADFCAIVERNKDRFTGGVTHSFT 180
           DRL FC  E Q KYFEKQF+LA  ++LPMFLH R A  +F  I++RN+DR  GGV HSF 
Sbjct: 118 DRLEFCSKETQLKYFEKQFDLAERSRLPMFLHCRNAHKEFLEIMQRNRDRCVGGVVHSFD 177

Query: 181 GSAEDRDKLLTFNMYIGINGCSLKTAENLDVVRGIPIERMMIETDSPYCEIKNAHAGISF 240
           G+ ED + ++  ++YIGINGCSLKT  NLDV++ IP ER+MIETD+P+C +KN HAG   
Sbjct: 178 GTKEDAEAIIALDLYIGINGCSLKTESNLDVLKSIPSERLMIETDAPWCGVKNTHAGSKL 237

Query: 241 VKSTWPSKKKEKYDQDSLVKGRNEPCLVRQVLEVVAGCKGINDIDQLSRTLYHNTCRVFF 300
           VK+T+P+KK  K++    +K RNEPC + QVLE++A  +    + +LS+TLY+NT ++FF
Sbjct: 238 VKTTFPTKK--KWESGHCLKDRNEPCHIIQVLEIMASAREEEPL-ELSKTLYNNTLKLFF 294

Query: 301 P 301
           P
Sbjct: 295 P 295
Putative deoxyribonuclease.
Xenopus laevis (taxid: 8355)
EC: 3EC: .EC: 1EC: .EC: 2EC: 1EC: .EC: -
>sp|Q6P1N9|TATD1_HUMAN Putative deoxyribonuclease TATDN1 OS=Homo sapiens GN=TATDN1 PE=1 SV=2 Back     alignment and function description
>sp|Q148G4|TATD1_BOVIN Putative deoxyribonuclease TATDN1 OS=Bos taurus GN=TATDN1 PE=2 SV=1 Back     alignment and function description
>sp|Q6P8M1|TATD1_MOUSE Putative deoxyribonuclease TATDN1 OS=Mus musculus GN=Tatdn1 PE=2 SV=1 Back     alignment and function description
>sp|Q6GML7|TATD1_DANRE Putative deoxyribonuclease TATDN1 OS=Danio rerio GN=tatdn1 PE=2 SV=1 Back     alignment and function description
>sp|Q9UUF1|YNF8_SCHPO Deoxyribonuclease Tat-D OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pi038 PE=3 SV=1 Back     alignment and function description
>sp|P34220|YBF5_YEAST Deoxyribonuclease Tat-D OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YBL055C PE=1 SV=1 Back     alignment and function description
>sp|Q8SW70|TATD1_ENCCU Putative deoxyribonuclease TATDN1 homolog OS=Encephalitozoon cuniculi (strain GB-M1) GN=ECU03_0200 PE=3 SV=1 Back     alignment and function description
>sp|D0Z9R0|TATD_EDWTE Tat-linked quality control protein TatD OS=Edwardsiella tarda (strain EIB202) GN=tatD PE=3 SV=1 Back     alignment and function description
>sp|D4GGR2|TATD_PANAM Tat-linked quality control protein TatD OS=Pantoea ananatis (strain LMG 20103) GN=tatD PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query319
359806785319 uncharacterized protein LOC100814321 [Gl 0.996 0.996 0.871 1e-166
79442300320 TatD related DNase [Arabidopsis thaliana 0.996 0.993 0.836 1e-162
449437480323 PREDICTED: putative deoxyribonuclease TA 0.993 0.981 0.849 1e-160
42572645323 TatD related DNase [Arabidopsis thaliana 0.996 0.984 0.829 1e-160
225463274320 PREDICTED: putative deoxyribonuclease TA 0.996 0.993 0.833 1e-160
449528231323 PREDICTED: putative deoxyribonuclease TA 0.993 0.981 0.842 1e-159
388522969320 unknown [Lotus japonicus] 0.981 0.978 0.840 1e-158
255566165304 TatD DNase domain-containing deoxyribonu 0.934 0.980 0.866 1e-155
224140000304 predicted protein [Populus trichocarpa] 0.946 0.993 0.854 1e-155
297819954353 hypothetical protein ARALYDRAFT_485607 [ 0.949 0.858 0.811 1e-152
>gi|359806785|ref|NP_001241560.1| uncharacterized protein LOC100814321 [Glycine max] gi|255648299|gb|ACU24602.1| unknown [Glycine max] Back     alignment and taxonomy information
 Score =  589 bits (1519), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 278/319 (87%), Positives = 298/319 (93%), Gaps = 1/319 (0%)

Query: 1   MATIRLIDIAVNFTDGMFKGIYHGKQCHASDIATVLSRAWSSGVDRIIVTGGSLEESKEA 60
           MA IR+IDIAVNFTDGMFKGIYHGKQCH SDIATVL+RAW++GV RIIVTGGSLEES+EA
Sbjct: 1   MAGIRMIDIAVNFTDGMFKGIYHGKQCHVSDIATVLNRAWAAGVTRIIVTGGSLEESREA 60

Query: 61  LAIAETDGRLFCTVGVHPTRCKEFEESGDPEKHFQALLSLAKEGIEKGKVVAIGECGLDY 120
           LAIAETDGRLFCTVGVHPTRCKEFEESGDPEKHFQALLSLAKEGI+KGKVVAIGECGLDY
Sbjct: 61  LAIAETDGRLFCTVGVHPTRCKEFEESGDPEKHFQALLSLAKEGIQKGKVVAIGECGLDY 120

Query: 121 DRLHFCPSEIQRKYFEKQFELAYATKLPMFLHMREAAADFCAIVERNKDRFTGGVTHSFT 180
           DRLHFCP+EIQ+KYFEKQFELAY TKLPMFLHMR AAADFC IVE+NKDRFT GVTHSFT
Sbjct: 121 DRLHFCPAEIQKKYFEKQFELAYITKLPMFLHMRAAAADFCEIVEKNKDRFTAGVTHSFT 180

Query: 181 GSAEDRDKLLTFN-MYIGINGCSLKTAENLDVVRGIPIERMMIETDSPYCEIKNAHAGIS 239
           GS +D  KLL+F+ MYIGINGCSLKT ENLDVV+GIP+ERMMIETDSPYCEIKN HAGI 
Sbjct: 181 GSMDDCIKLLSFDKMYIGINGCSLKTTENLDVVKGIPVERMMIETDSPYCEIKNTHAGIG 240

Query: 240 FVKSTWPSKKKEKYDQDSLVKGRNEPCLVRQVLEVVAGCKGINDIDQLSRTLYHNTCRVF 299
           FVKSTWPSKKKEKYDQ+ +VKGRNEPCLV+QVLEVVAGCKGIND+  LSRTLYHNTCR+F
Sbjct: 241 FVKSTWPSKKKEKYDQECIVKGRNEPCLVKQVLEVVAGCKGINDVSNLSRTLYHNTCRIF 300

Query: 300 FPQDLDSTADALLAGRRNT 318
           FP DLDS ADALLAG  +T
Sbjct: 301 FPHDLDSAADALLAGGNST 319

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|79442300|ref|NP_190807.3| TatD related DNase [Arabidopsis thaliana] gi|29028880|gb|AAO64819.1| At3g52390 [Arabidopsis thaliana] gi|110736520|dbj|BAF00227.1| hypothetical protein [Arabidopsis thaliana] gi|332645420|gb|AEE78941.1| TatD related DNase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449437480|ref|XP_004136520.1| PREDICTED: putative deoxyribonuclease TATDN1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|42572645|ref|NP_974418.1| TatD related DNase [Arabidopsis thaliana] gi|332645421|gb|AEE78942.1| TatD related DNase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|225463274|ref|XP_002264091.1| PREDICTED: putative deoxyribonuclease TATDN1 [Vitis vinifera] gi|296089369|emb|CBI39141.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449528231|ref|XP_004171109.1| PREDICTED: putative deoxyribonuclease TATDN1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|388522969|gb|AFK49546.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|255566165|ref|XP_002524070.1| TatD DNase domain-containing deoxyribonuclease, putative [Ricinus communis] gi|223536638|gb|EEF38280.1| TatD DNase domain-containing deoxyribonuclease, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224140000|ref|XP_002323375.1| predicted protein [Populus trichocarpa] gi|222868005|gb|EEF05136.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297819954|ref|XP_002877860.1| hypothetical protein ARALYDRAFT_485607 [Arabidopsis lyrata subsp. lyrata] gi|297323698|gb|EFH54119.1| hypothetical protein ARALYDRAFT_485607 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query319
TAIR|locus:2079884323 AT3G52390 "AT3G52390" [Arabido 0.996 0.984 0.829 3.9e-147
UNIPROTKB|Q6P1N9297 TATDN1 "Putative deoxyribonucl 0.924 0.993 0.508 2.2e-82
UNIPROTKB|Q148G4297 TATDN1 "Putative deoxyribonucl 0.924 0.993 0.504 5.8e-82
UNIPROTKB|F1NPF2294 TATDN1 "Uncharacterized protei 0.909 0.986 0.513 1.5e-81
UNIPROTKB|I3LKU9297 TATDN1 "Uncharacterized protei 0.924 0.993 0.501 2e-81
MGI|MGI:1916944295 Tatdn1 "TatD DNase domain cont 0.921 0.996 0.503 2e-81
ZFIN|ZDB-GENE-040704-56298 tatdn1 "TatD DNase domain cont 0.921 0.986 0.51 1.2e-79
FB|FBgn0033117306 CG3358 [Drosophila melanogaste 0.915 0.954 0.513 1.9e-76
UNIPROTKB|E5RG17322 TATDN1 "Putative deoxyribonucl 0.614 0.608 0.537 4.1e-75
UNIPROTKB|E2RRK7265 TATDN1 "Uncharacterized protei 0.827 0.996 0.518 6.5e-74
TAIR|locus:2079884 AT3G52390 "AT3G52390" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1437 (510.9 bits), Expect = 3.9e-147, P = 3.9e-147
 Identities = 267/322 (82%), Positives = 296/322 (91%)

Query:     1 MATIRLI---DIAVNFTDGMFKGIYHGKQCHASDIATVLSRAWSSGVDRIIVTGGSLEES 57
             MA++++I   DIAVNFTDGMFKG+YHGK CH  DIATVL+RAWS+GVDRIIVTGGSLEES
Sbjct:     1 MASLKMIGKSDIAVNFTDGMFKGLYHGKNCHVPDIATVLNRAWSAGVDRIIVTGGSLEES 60

Query:    58 KEALAIAETDGRLFCTVGVHPTRCKEFEESGDPEKHFQALLSLAKEGIEKGKVVAIGECG 117
             +EALAIAETDGRLFCTVGVHPTRC EFEESGDPEKH+QAL SLAKEG++KGKVVAIGECG
Sbjct:    61 REALAIAETDGRLFCTVGVHPTRCNEFEESGDPEKHYQALFSLAKEGMQKGKVVAIGECG 120

Query:   118 LDYDRLHFCPSEIQRKYFEKQFELAYATKLPMFLHMREAAADFCAIVERNKDRFTGGVTH 177
             LDYDRL FC  +IQ+KYFEKQFELAYATKLPMFLHMR AA DFC IVERNK+RFTGGV H
Sbjct:   121 LDYDRLQFCSVDIQKKYFEKQFELAYATKLPMFLHMRAAAEDFCEIVERNKNRFTGGVAH 180

Query:   178 SFTGSAEDRDKLLTFN-MYIGINGCSLKTAENLDVVRGIPIERMMIETDSPYCEIKNAHA 236
             SFTGSA DRDKLL+F+ MY+G+NGCSLKTAENL+V++GIP+ERMMIETDSPYC+IKN HA
Sbjct:   181 SFTGSASDRDKLLSFDKMYLGVNGCSLKTAENLEVMKGIPVERMMIETDSPYCDIKNTHA 240

Query:   237 GISFVKSTWPSKKKEKYDQDSLVKGRNEPCLVRQVLEVVAGCKGINDIDQLSRTLYHNTC 296
             GI FVKSTWPSKKKEKYDQ+SLVKGRNEPCLVRQVLEVVAG KG+ D++Q+S TLYHNTC
Sbjct:   241 GIKFVKSTWPSKKKEKYDQESLVKGRNEPCLVRQVLEVVAGYKGLGDLNQVSSTLYHNTC 300

Query:   297 RVFFPQDLDSTADALLAGRRNT 318
             RVFFPQDLDS ADALL+G   T
Sbjct:   301 RVFFPQDLDSAADALLSGHHET 322
GO:0004536 "deoxyribonuclease activity" evidence=ISS
GO:0005634 "nucleus" evidence=ISM
GO:0016888 "endodeoxyribonuclease activity, producing 5'-phosphomonoesters" evidence=IEA
UNIPROTKB|Q6P1N9 TATDN1 "Putative deoxyribonuclease TATDN1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q148G4 TATDN1 "Putative deoxyribonuclease TATDN1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1NPF2 TATDN1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|I3LKU9 TATDN1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:1916944 Tatdn1 "TatD DNase domain containing 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040704-56 tatdn1 "TatD DNase domain containing 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
FB|FBgn0033117 CG3358 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|E5RG17 TATDN1 "Putative deoxyribonuclease TATDN1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2RRK7 TATDN1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q6P8M1TATD1_MOUSE3, ., 1, ., 2, 1, ., -0.50660.92160.9966yesno
Q148G4TATD1_BOVIN3, ., 1, ., 2, 1, ., -0.50830.92470.9932yesno
Q6GML7TATD1_DANRE3, ., 1, ., 2, 1, ., -0.510.92160.9865yesno
Q8SW70TATD1_ENCCU3, ., 1, ., 2, 1, ., -0.36050.81190.9487yesno
Q640V9TATD1_XENLA3, ., 1, ., 2, 1, ., -0.52150.92470.9932N/Ano
Q6P1N9TATD1_HUMAN3, ., 1, ., 2, 1, ., -0.51160.92470.9932yesno
Q9UUF1YNF8_SCHPO3, ., 1, ., 2, 1, ., -0.43890.93410.9551yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.1.210.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
AT3G52390
tatD-related deoxyribonuclease family protein; tatD-related deoxyribonuclease family protein; FUNCTIONS IN- endodeoxyribonuclease activity, producing 5'-phosphomonoesters, deoxyribonuclease activity; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 24 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Deoxyribonuclease, TatD Mg-dependent (InterPro-IPR012278), Deoxyribonuclease, TatD (InterPro-IPR015992), Deoxyribonuclease, TatD-related, conserved site (InterPro-IPR018228), Deoxyribonuclease, TatD-related (Inte [...] (323 aa)
(Arabidopsis thaliana)
Predicted Functional Partners:
OVA1
OVA1 (OVULE ABORTION 1); ATP binding / aminoacyl-tRNA ligase/ methionine-tRNA ligase/ nucleotid [...] (616 aa)
•     • 0.532
APG2
APG2 (ALBINO AND PALE GREEN 2); proton motive force dependent protein transmembrane transporter [...] (340 aa)
•     • 0.451

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query319
cd01310251 cd01310, TatD_DNAse, TatD like proteins; E 9e-84
COG0084256 COG0084, TatD, Mg-dependent DNase [DNA replication 2e-69
pfam01026255 pfam01026, TatD_DNase, TatD related DNase 5e-60
TIGR00010252 TIGR00010, TIGR00010, hydrolase, TatD family 5e-52
PRK10425258 PRK10425, PRK10425, DNase TatD; Provisional 7e-44
PRK10812265 PRK10812, PRK10812, putative DNAse; Provisional 5e-24
PRK11449258 PRK11449, PRK11449, putative deoxyribonuclease Yjj 1e-19
COG1099254 COG1099, COG1099, Predicted metal-dependent hydrol 1e-06
COG1831285 COG1831, COG1831, Predicted metal-dependent hydrol 6e-06
>gnl|CDD|238635 cd01310, TatD_DNAse, TatD like proteins; E Back     alignment and domain information 
 Score =  252 bits (647), Expect = 9e-84
 Identities = 97/297 (32%), Positives = 135/297 (45%), Gaps = 48/297 (16%)

Query: 6   LIDIAVNFTDGMFKGIYHGKQCHASDIATVLSRAWSSGVDRIIVTGGSLEESKEALAIAE 65
           LID   +     F           +D   VL+RA  +GV +IIV G  L+ SK AL +A+
Sbjct: 1   LIDTHCHLDFPQFD----------ADRDDVLARAREAGVIKIIVVGTDLKSSKRALELAK 50

Query: 66  TDGRLFCTVGVHPTRCKEFEESGDPEKHFQALLSLAKEGIEKGKVVAIGECGLDYDRLHF 125
               ++  VG+HP    E  +          L  LA       KVVAIGE GLDY R   
Sbjct: 51  KYDNVYAAVGLHPHDADEHVDE-----DLDLLELLA----ANPKVVAIGEIGLDYYRDKS 101

Query: 126 CPSEIQRKYFEKQFELAYATKLPMFLHMREAAADFCAIVERNKDRFTGGVTHSFTGSAED 185
            P E+Q++ F  Q ELA    LP+ +H R+A  D   I++        GV H F+GSAE+
Sbjct: 102 -PREVQKEVFRAQLELAKELNLPVVIHSRDAHEDVLEILKEYGPPK-RGVFHCFSGSAEE 159

Query: 186 RDKLLTFNMYIGINGCSLKTA--ENLDVVRGIPIERMMIETDSPYCEIKNAHAGISFVKS 243
             +LL    YI I+G        E  +VV+ IP+ER+++ETDSPY               
Sbjct: 160 AKELLDLGFYISISGIVTFKNANELREVVKEIPLERLLLETDSPYLAPVPFR-------- 211

Query: 244 TWPSKKKEKYDQDSLVKGRNEPCLVRQVLEVVAGCKGINDIDQLSRTLYHNTCRVFF 300
                             RNEP  V+ V E +A  KGI  +++++     N  R+F 
Sbjct: 212 ----------------GKRNEPAYVKHVAEKIAELKGI-SVEEVAEVTTENAKRLFG 251

coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity. Length = 251
>gnl|CDD|223162 COG0084, TatD, Mg-dependent DNase [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|216250 pfam01026, TatD_DNase, TatD related DNase Back     alignment and domain information
>gnl|CDD|232780 TIGR00010, TIGR00010, hydrolase, TatD family Back     alignment and domain information
>gnl|CDD|182449 PRK10425, PRK10425, DNase TatD; Provisional Back     alignment and domain information
>gnl|CDD|236767 PRK10812, PRK10812, putative DNAse; Provisional Back     alignment and domain information
>gnl|CDD|171118 PRK11449, PRK11449, putative deoxyribonuclease YjjV; Provisional Back     alignment and domain information
>gnl|CDD|224024 COG1099, COG1099, Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only] Back     alignment and domain information
>gnl|CDD|224744 COG1831, COG1831, Predicted metal-dependent hydrolase (urease superfamily) [General function prediction only] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 319
COG0084256 TatD Mg-dependent DNase [DNA replication, recombin 100.0
PRK10425258 DNase TatD; Provisional 100.0
PRK11449258 putative deoxyribonuclease YjjV; Provisional 100.0
PRK10812265 putative DNAse; Provisional 100.0
PF01026255 TatD_DNase: TatD related DNase The Pfam entry find 100.0
KOG3020296 consensus TatD-related DNase [Replication, recombi 100.0
TIGR00010252 hydrolase, TatD family. Several genomes have multi 100.0
cd01310251 TatD_DNAse TatD like proteins; E.coli TatD is a cy 100.0
cd00530293 PTE Phosphotriesterase (PTE) catalyzes the hydroly 100.0
COG1099254 Predicted metal-dependent hydrolases with the TIM- 100.0
COG1831285 Predicted metal-dependent hydrolase (urease superf 99.94
TIGR03583365 EF_0837 probable amidohydrolase EF_0837/AHA_3915. 99.9
cd01295 422 AdeC Adenine deaminase (AdeC) directly deaminates 99.78
PRK09875292 putative hydrolase; Provisional 99.74
cd01307338 Met_dep_hydrolase_B Metallo-dependent hydrolases, 99.63
PF04909273 Amidohydro_2: Amidohydrolase; InterPro: IPR006992 99.59
cd01292275 metallo-dependent_hydrolases Superfamily of metall 99.58
cd01311263 PDC_hydrolase 2-pyrone-4,6-dicarboxylic acid (PDC) 99.53
PRK09237380 dihydroorotase; Provisional 99.42
PF02126308 PTE: Phosphotriesterase family; InterPro: IPR00155 99.31
COG2159293 Predicted metal-dependent hydrolase of the TIM-bar 99.27
COG1735316 Php Predicted metal-dependent hydrolase with the T 99.11
COG3618279 Predicted metal-dependent hydrolase of the TIM-bar 99.09
TIGR01975389 isoAsp_dipep isoaspartyl dipeptidase IadA. The L-i 99.04
PRK10657388 isoaspartyl dipeptidase; Provisional 98.92
PRK12394379 putative metallo-dependent hydrolase; Provisional 98.79
cd01294335 DHOase Dihydroorotase (DHOase) catalyzes the rever 98.78
cd01299342 Met_dep_hydrolase_A Metallo-dependent hydrolases, 98.67
TIGR02967401 guan_deamin guanine deaminase. This model describe 98.67
COG3964386 Predicted amidohydrolase [General function predict 98.6
PRK09228433 guanine deaminase; Provisional 98.59
TIGR01178 552 ade adenine deaminase. The family described by thi 98.59
cd01308387 Isoaspartyl-dipeptidase Isoaspartyl dipeptidase hy 98.57
cd01312381 Met_dep_hydrolase_D Metallo-dependent hydrolases, 98.57
PRK07213375 chlorohydrolase; Provisional 98.49
cd01297415 D-aminoacylase D-aminoacylases (N-acyl-D-Amino aci 98.49
PRK07583438 cytosine deaminase-like protein; Validated 98.47
cd01298411 ATZ_TRZ_like TRZ/ATZ family contains enzymes from 98.43
cd01293398 Bact_CD Bacterial cytosine deaminase and related m 98.43
cd01303429 GDEase Guanine deaminase (GDEase). Guanine deamina 98.39
PRK06380418 metal-dependent hydrolase; Provisional 98.39
PRK08203451 hydroxydechloroatrazine ethylaminohydrolase; Revie 98.38
PRK09045443 N-ethylammeline chlorohydrolase; Provisional 98.37
PRK08204449 hypothetical protein; Provisional 98.37
PRK06687419 chlorohydrolase; Validated 98.34
PLN02942486 dihydropyrimidinase 98.26
cd01305263 archeal_chlorohydrolases Predicted chlorohydrolase 98.26
PRK06038430 N-ethylammeline chlorohydrolase; Provisional 98.25
PRK08393424 N-ethylammeline chlorohydrolase; Provisional 98.21
PRK07228445 N-ethylammeline chlorohydrolase; Provisional 98.21
PRK15493435 5-methylthioadenosine/S-adenosylhomocysteine deami 98.2
cd01317374 DHOase_IIa Dihydroorotase (DHOase), subgroup IIa; 98.15
PRK07369418 dihydroorotase; Provisional 98.14
TIGR01430324 aden_deam adenosine deaminase. This family include 98.05
PRK05451345 dihydroorotase; Provisional 97.97
cd01313418 Met_dep_hydrolase_E Metallo-dependent hydrolases, 97.96
PRK12393457 amidohydrolase; Provisional 97.94
PLN02795505 allantoinase 97.94
cd01302337 Cyclic_amidohydrolases Cyclic amidohydrolases, inc 97.92
PRK10027 588 cryptic adenine deaminase; Provisional 97.92
TIGR00856341 pyrC_dimer dihydroorotase, homodimeric type. This 97.92
cd01320325 ADA Adenosine deaminase (ADA) is a monomeric zinc 97.91
TIGR01224377 hutI imidazolonepropionase. This enzyme catalyzes 97.87
PRK07203442 putative chlorohydrolase/aminohydrolase; Validated 97.8
PRK09061 509 D-glutamate deacylase; Validated 97.77
PRK07572426 cytosine deaminase; Validated 97.77
PRK06846410 putative deaminase; Validated 97.76
PRK08417386 dihydroorotase; Provisional 97.74
PRK08418408 chlorohydrolase; Provisional 97.71
PRK06886329 hypothetical protein; Validated 97.69
PRK05985391 cytosine deaminase; Provisional 97.69
PRK09358340 adenosine deaminase; Provisional 97.66
COG1001 584 AdeC Adenine deaminase [Nucleotide transport and m 97.64
PRK09357423 pyrC dihydroorotase; Validated 97.58
PRK09229456 N-formimino-L-glutamate deiminase; Validated 97.58
TIGR02318376 phosphono_phnM phosphonate metabolism protein PhnM 97.56
PRK02382443 dihydroorotase; Provisional 97.52
cd01315447 L-HYD_ALN L-Hydantoinases (L-HYDs) and Allantoinas 97.52
TIGR02033 454 D-hydantoinase D-hydantoinase. This model represen 97.48
PRK09230426 cytosine deaminase; Provisional 97.44
cd01314447 D-HYD D-hydantoinases (D-HYD) also called dihydrop 97.44
PRK08323 459 phenylhydantoinase; Validated 97.42
PLN02599364 dihydroorotase 97.42
PRK15446383 phosphonate metabolism protein PhnM; Provisional 97.4
TIGR00857411 pyrC_multi dihydroorotase, multifunctional complex 97.4
PRK06189451 allantoinase; Provisional 97.32
TIGR03178443 allantoinase allantoinase. This enzyme carries out 97.29
TIGR03314441 Se_ssnA putative selenium metabolism protein SsnA. 97.26
cd01316344 CAD_DHOase The eukaryotic CAD protein is a trifunc 97.07
PRK07627425 dihydroorotase; Provisional 97.06
cd01296371 Imidazolone-5PH Imidazolonepropionase/imidazolone- 97.03
cd01309359 Met_dep_hydrolase_C Metallo-dependent hydrolases, 97.02
PRK09236444 dihydroorotase; Reviewed 96.99
PRK08044449 allantoinase; Provisional 96.98
cd01318361 DHOase_IIb Dihydroorotase (DHOase), subgroup IIb; 96.95
COG0402421 SsnA Cytosine deaminase and related metal-dependen 96.94
cd00854374 NagA N-acetylglucosamine-6-phosphate deacetylase, 96.91
cd01300479 YtcJ_like YtcJ_like metal dependent amidohydrolase 96.66
PRK09356406 imidazolonepropionase; Validated 96.6
PRK13207 568 ureC urease subunit alpha; Reviewed 96.59
cd00375 567 Urease_alpha Urease alpha-subunit; Urease is a nic 96.59
COG0044430 PyrC Dihydroorotase and related cyclic amidohydrol 96.59
PRK06151488 N-ethylammeline chlorohydrolase; Provisional 96.44
KOG4245297 consensus Predicted metal-dependent hydrolase of t 96.34
PRK13308 569 ureC urease subunit alpha; Reviewed 96.27
PRK14085382 imidazolonepropionase; Provisional 96.27
PRK09060444 dihydroorotase; Validated 96.24
PRK13985 568 ureB urease subunit beta; Provisional 96.2
TIGR01792 567 urease_alph urease, alpha subunit. This model desc 96.18
PRK13404477 dihydropyrimidinase; Provisional 96.17
PRK09059429 dihydroorotase; Validated 96.12
PRK07575438 dihydroorotase; Provisional 96.11
PRK07328269 histidinol-phosphatase; Provisional 96.09
PRK04250398 dihydroorotase; Provisional 95.87
cd01304 541 FMDH_A Formylmethanofuran dehydrogenase (FMDH) sub 95.83
PRK11170382 nagA N-acetylglucosamine-6-phosphate deacetylase; 95.74
PRK13206 573 ureC urease subunit alpha; Reviewed 95.73
PTZ00124362 adenosine deaminase; Provisional 95.7
PRK00369392 pyrC dihydroorotase; Provisional 95.64
PRK13404 477 dihydropyrimidinase; Provisional 95.64
TIGR03121556 one_C_dehyd_A formylmethanofuran dehydrogenase sub 95.52
cd00443305 ADA_AMPD Adenosine/AMP deaminase. Adenosine deamin 95.42
COG2355313 Zn-dependent dipeptidase, microsomal dipeptidase h 95.39
cd01306325 PhnM PhnM is believed to be a subunit of the membr 95.37
PRK00912237 ribonuclease P protein component 3; Provisional 95.33
TIGR02022455 hutF formiminoglutamate deiminase. In some species 95.16
PF07969404 Amidohydro_3: Amidohydrolase family; InterPro: IPR 94.85
PRK13309 572 ureC urease subunit alpha; Reviewed 94.82
PRK08392215 hypothetical protein; Provisional 94.7
PF01979333 Amidohydro_1: Amidohydrolase family; InterPro: IPR 94.64
COG0418344 PyrC Dihydroorotase [Nucleotide transport and meta 93.99
PF01244320 Peptidase_M19: Membrane dipeptidase (Peptidase fam 93.91
PRK08609570 hypothetical protein; Provisional 93.88
PLN02303 837 urease 93.69
TIGR00221380 nagA N-acetylglucosamine-6-phosphate deacetylase. 93.59
PF00962331 A_deaminase: Adenosine/AMP deaminase immunodeficie 93.49
COG1574535 Predicted metal-dependent hydrolase with the TIM-b 93.28
PRK08123270 histidinol-phosphatase; Reviewed 92.64
cd01301309 rDP_like renal dipeptidase (rDP), best studied in 92.3
COG1228406 HutI Imidazolonepropionase and related amidohydrol 91.92
TIGR01856253 hisJ_fam histidinol phosphate phosphatase HisJ fam 90.98
cd01321345 ADGF Adenosine deaminase-related growth factors (A 90.83
PRK09856275 fructoselysine 3-epimerase; Provisional 90.69
PRK09248246 putative hydrolase; Validated 90.25
TIGR01212302 radical SAM protein, TIGR01212 family. This unchar 89.43
COG0804 568 UreC Urea amidohydrolase (urease) alpha subunit [A 89.14
smart0048167 POLIIIAc DNA polymerase alpha chain like domain. D 89.08
COG4464254 CapC Capsular polysaccharide biosynthesis protein 88.53
COG0329299 DapA Dihydrodipicolinate synthase/N-acetylneuramin 86.95
PRK05588255 histidinol-phosphatase; Provisional 86.57
PF03102241 NeuB: NeuB family; InterPro: IPR013132 NeuB is the 86.54
PF02811175 PHP: PHP domain; InterPro: IPR004013 The PHP (Poly 85.43
TIGR03569329 NeuB_NnaB N-acetylneuraminate synthase. This famil 85.14
TIGR03234254 OH-pyruv-isom hydroxypyruvate isomerase. This enzy 84.9
PRK07945335 hypothetical protein; Provisional 84.67
PF02679244 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); 84.42
PRK06361212 hypothetical protein; Provisional 84.15
PRK03620303 5-dehydro-4-deoxyglucarate dehydratase; Provisiona 84.09
PRK13209283 L-xylulose 5-phosphate 3-epimerase; Reviewed 83.78
TIGR00677281 fadh2_euk methylenetetrahydrofolate reductase, euk 83.21
PRK02925 466 glucuronate isomerase; Reviewed 82.6
PRK09432296 metF 5,10-methylenetetrahydrofolate reductase; Pro 81.83
TIGR00676272 fadh2 5,10-methylenetetrahydrofolate reductase, pr 81.49
PF00701289 DHDPS: Dihydrodipicolinate synthetase family; Inte 81.48
TIGR03249296 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-deh 81.46
cd03465330 URO-D_like The URO-D _like protein superfamily inc 81.28
cd00408281 DHDPS-like Dihydrodipicolinate synthase family. A 81.11
COG1387237 HIS2 Histidinol phosphatase and related hydrolases 81.08
cd00951289 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also 80.15
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair] Back     alignment and domain information 
Probab=100.00  E-value=2.5e-67  Score=475.63  Aligned_cols=254  Identities=39%  Similarity=0.589  Sum_probs=229.5

Q ss_pred             CcEEeeccCCCCccccccccCCcCCCCCHHHHHHHHHHcCCCEEEEeCCCHHhHHHHHHHHHhcCCeEEeeecCCCCccc
Q 020985            4 IRLIDIAVNFTDGMFKGIYHGKQCHASDIATVLSRAWSSGVDRIIVTGGSLEESKEALAIAETDGRLFCTVGVHPTRCKE   83 (319)
Q Consensus         4 m~iiD~H~Hl~~~~~~~~~~~~~~h~~~~~~vl~~~~~~Gv~~~v~~~~~~~~~~~~~~l~~~~~~i~~~~GiHP~~~~~   83 (319)
                      ||+||+|||++...|.          .+.++++++++++||..++++|++.+++..+++++++||++|+++|+||++  .
T Consensus         1 ~~liDtH~HL~~~~~~----------~d~~~vi~~a~~~gv~~~~~~g~~~~~~~~~~~la~~y~~v~~~~G~HP~~--~   68 (256)
T COG0084           1 MMLIDTHCHLDFEEFD----------EDRDEVIARAREAGVKKMVVVGTDLEDFKRALELAEKYPNVYAAVGVHPLD--A   68 (256)
T ss_pred             CccEEeeeCCCchhhc----------CCHHHHHHHHHHcCCcEEEEeecCHHHHHHHHHHHHhCCCeEEEEeeCCCc--c
Confidence            7999999999987775          799999999999999999999999999999999999999999999999999  2


Q ss_pred             ccccCCCHHHHHHHHHHHHhccCCCCEEEEEeecCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEEEEeccchHHHHHH
Q 020985           84 FEESGDPEKHFQALLSLAKEGIEKGKVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATKLPMFLHMREAAADFCAI  163 (319)
Q Consensus        84 ~~~~~~~~~~l~~l~~~l~~~~~~~~~~aIGEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~~~Pv~iH~r~a~~~~l~i  163 (319)
                      ..   ..++.+++|.+++..   +++++|||||||||++.....++.|+++|++||++|+++++||+||+|+|.++++++
T Consensus        69 ~~---~~~~~~~~l~~~~~~---~~~vvaIGEiGLDy~~~~~~~~~~Q~~~F~~ql~lA~~~~lPviIH~R~A~~d~~~i  142 (256)
T COG0084          69 DE---HSEEDLEELEQLAEH---HPKVVAIGEIGLDYYWDKEPDKERQEEVFEAQLELAKELNLPVIIHTRDAHEDTLEI  142 (256)
T ss_pred             cc---ccHHHHHHHHHHHhc---CCCeEEEEecccCccccccccHHHHHHHHHHHHHHHHHcCCCEEEEccccHHHHHHH
Confidence            21   134778888888862   489999999999999855336889999999999999999999999999999999999


Q ss_pred             HHhccCCCcceEEEeCCCCHHHHHHHHHCCCeEeecccc-ccC-hhhHHHHhcCCCCCEEEcCCCCCccccccccccccc
Q 020985          164 VERNKDRFTGGVTHSFTGSAEDRDKLLTFNMYIGINGCS-LKT-AENLDVVRGIPIERMMIETDSPYCEIKNAHAGISFV  241 (319)
Q Consensus       164 l~~~~~~~~~~i~H~f~g~~~~~~~~l~~g~y~s~sg~~-~~~-~~~~~~l~~ip~drlLlETD~P~~~~~~~~~~~~~~  241 (319)
                      |++++. ..++|+|||||+.+++++++++|+||||||.+ +++ .+.+++++.+|+||||+|||+||++           
T Consensus       143 L~~~~~-~~~gi~HcFsGs~e~a~~~~d~G~yisisG~itfk~a~~~~ev~~~iPldrLL~ETDsPyl~-----------  210 (256)
T COG0084         143 LKEEGA-PVGGVLHCFSGSAEEARKLLDLGFYISISGIVTFKNAEKLREVARELPLDRLLLETDAPYLA-----------  210 (256)
T ss_pred             HHhcCC-CCCEEEEccCCCHHHHHHHHHcCeEEEECceeecCCcHHHHHHHHhCCHhHeEeccCCCCCC-----------
Confidence            999874 35889999999999999999999999999996 444 3688999999999999999999953           


Q ss_pred             cccCCCcccccccccccCCCCCccchHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhcCC
Q 020985          242 KSTWPSKKKEKYDQDSLVKGRNEPCLVRQVLEVVAGCKGINDIDQLSRTLYHNTCRVFFP  301 (319)
Q Consensus       242 ~~~l~~~~~~k~~~~~~~~~~n~P~~l~~v~~~iA~~~~is~~e~~~~~~~~N~~rlf~~  301 (319)
                          |.|+|||         +|+|+++..|++.||++||++ .+++++++++|++++|++
T Consensus       211 ----P~p~rGk---------rNeP~~v~~v~~~iAelk~~~-~eeva~~t~~N~~~lf~~  256 (256)
T COG0084         211 ----PVPYRGK---------RNEPAYVRHVAEKLAELKGIS-AEEVAEITTENAKRLFGL  256 (256)
T ss_pred             ----CcCCCCC---------CCCchHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHHhcC
Confidence                4467876         999999999999999999999 999999999999999985

>PRK10425 DNase TatD; Provisional Back     alignment and domain information
>PRK11449 putative deoxyribonuclease YjjV; Provisional Back     alignment and domain information
>PRK10812 putative DNAse; Provisional Back     alignment and domain information
>PF01026 TatD_DNase: TatD related DNase The Pfam entry finds members not in the Prosite definition Back     alignment and domain information
>KOG3020 consensus TatD-related DNase [Replication, recombination and repair] Back     alignment and domain information
>TIGR00010 hydrolase, TatD family Back     alignment and domain information
>cd01310 TatD_DNAse TatD like proteins; E Back     alignment and domain information
>cd00530 PTE Phosphotriesterase (PTE) catalyzes the hydrolysis of organophosphate nerve agents, including the chemical warfare agents VX, soman, and sarin as well as the insecticide paraoxon Back     alignment and domain information
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only] Back     alignment and domain information
>COG1831 Predicted metal-dependent hydrolase (urease superfamily) [General function prediction only] Back     alignment and domain information
>TIGR03583 EF_0837 probable amidohydrolase EF_0837/AHA_3915 Back     alignment and domain information
>cd01295 AdeC Adenine deaminase (AdeC) directly deaminates adenine to form hypoxanthine Back     alignment and domain information
>PRK09875 putative hydrolase; Provisional Back     alignment and domain information
>cd01307 Met_dep_hydrolase_B Metallo-dependent hydrolases, subgroup B is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site Back     alignment and domain information
>PF04909 Amidohydro_2: Amidohydrolase; InterPro: IPR006992 These proteins are related to the metal-dependent hydrolase superfamily [] Back     alignment and domain information
>cd01292 metallo-dependent_hydrolases Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site Back     alignment and domain information
>cd01311 PDC_hydrolase 2-pyrone-4,6-dicarboxylic acid (PDC) hydrolase hydrolyzes PDC to yield 4-oxalomesaconic acid (OMA) or its tautomer, 4-carboxy-2-hydroxymuconic acid (CHM) Back     alignment and domain information
>PRK09237 dihydroorotase; Provisional Back     alignment and domain information
>PF02126 PTE: Phosphotriesterase family; InterPro: IPR001559 Synonym(s): Paraoxonase, A-esterase, Aryltriphosphatase, Phosphotriesterase, Paraoxon hydrolase Bacteria such as Brevundimonas diminuta (Pseudomonas diminuta) harbour a plasmid that carries the gene for Aryldialkylphosphatase (3 Back     alignment and domain information
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only] Back     alignment and domain information
>COG1735 Php Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only] Back     alignment and domain information
>COG3618 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only] Back     alignment and domain information
>TIGR01975 isoAsp_dipep isoaspartyl dipeptidase IadA Back     alignment and domain information
>PRK10657 isoaspartyl dipeptidase; Provisional Back     alignment and domain information
>PRK12394 putative metallo-dependent hydrolase; Provisional Back     alignment and domain information
>cd01294 DHOase Dihydroorotase (DHOase) catalyzes the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in the pyrimidine biosynthesis Back     alignment and domain information
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site Back     alignment and domain information
>TIGR02967 guan_deamin guanine deaminase Back     alignment and domain information
>COG3964 Predicted amidohydrolase [General function prediction only] Back     alignment and domain information
>PRK09228 guanine deaminase; Provisional Back     alignment and domain information
>TIGR01178 ade adenine deaminase Back     alignment and domain information
>cd01308 Isoaspartyl-dipeptidase Isoaspartyl dipeptidase hydrolyzes the beta-L-isoaspartyl linkages in dipeptides, as part of the degradative pathway to eliminate proteins with beta-L-isoaspartyl peptide bonds, bonds whereby the beta-group of an aspartate forms the peptide link with the amino group of the following amino acid Back     alignment and domain information
>cd01312 Met_dep_hydrolase_D Metallo-dependent hydrolases, subgroup D is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site Back     alignment and domain information
>PRK07213 chlorohydrolase; Provisional Back     alignment and domain information
>cd01297 D-aminoacylase D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics Back     alignment and domain information
>PRK07583 cytosine deaminase-like protein; Validated Back     alignment and domain information
>cd01298 ATZ_TRZ_like TRZ/ATZ family contains enzymes from the atrazine degradation pathway and related hydrolases Back     alignment and domain information
>cd01293 Bact_CD Bacterial cytosine deaminase and related metal-dependent hydrolases Back     alignment and domain information
>cd01303 GDEase Guanine deaminase (GDEase) Back     alignment and domain information
>PRK06380 metal-dependent hydrolase; Provisional Back     alignment and domain information
>PRK08203 hydroxydechloroatrazine ethylaminohydrolase; Reviewed Back     alignment and domain information
>PRK09045 N-ethylammeline chlorohydrolase; Provisional Back     alignment and domain information
>PRK08204 hypothetical protein; Provisional Back     alignment and domain information
>PRK06687 chlorohydrolase; Validated Back     alignment and domain information
>PLN02942 dihydropyrimidinase Back     alignment and domain information
>cd01305 archeal_chlorohydrolases Predicted chlorohydrolases Back     alignment and domain information
>PRK06038 N-ethylammeline chlorohydrolase; Provisional Back     alignment and domain information
>PRK08393 N-ethylammeline chlorohydrolase; Provisional Back     alignment and domain information
>PRK07228 N-ethylammeline chlorohydrolase; Provisional Back     alignment and domain information
>PRK15493 5-methylthioadenosine/S-adenosylhomocysteine deaminase; Provisional Back     alignment and domain information
>cd01317 DHOase_IIa Dihydroorotase (DHOase), subgroup IIa; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis Back     alignment and domain information
>PRK07369 dihydroorotase; Provisional Back     alignment and domain information
>TIGR01430 aden_deam adenosine deaminase Back     alignment and domain information
>PRK05451 dihydroorotase; Provisional Back     alignment and domain information
>cd01313 Met_dep_hydrolase_E Metallo-dependent hydrolases, subgroup D is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site Back     alignment and domain information
>PRK12393 amidohydrolase; Provisional Back     alignment and domain information
>PLN02795 allantoinase Back     alignment and domain information
>cd01302 Cyclic_amidohydrolases Cyclic amidohydrolases, including hydantoinase, dihydropyrimidinase, allantoinase, and dihydroorotase, are involved in the metabolism of pyrimidines and purines, sharing the property of hydrolyzing the cyclic amide bond of each substrate to the corresponding N-carbamyl amino acids Back     alignment and domain information
>PRK10027 cryptic adenine deaminase; Provisional Back     alignment and domain information
>TIGR00856 pyrC_dimer dihydroorotase, homodimeric type Back     alignment and domain information
>cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively Back     alignment and domain information
>TIGR01224 hutI imidazolonepropionase Back     alignment and domain information
>PRK07203 putative chlorohydrolase/aminohydrolase; Validated Back     alignment and domain information
>PRK09061 D-glutamate deacylase; Validated Back     alignment and domain information
>PRK07572 cytosine deaminase; Validated Back     alignment and domain information
>PRK06846 putative deaminase; Validated Back     alignment and domain information
>PRK08417 dihydroorotase; Provisional Back     alignment and domain information
>PRK08418 chlorohydrolase; Provisional Back     alignment and domain information
>PRK06886 hypothetical protein; Validated Back     alignment and domain information
>PRK05985 cytosine deaminase; Provisional Back     alignment and domain information
>PRK09358 adenosine deaminase; Provisional Back     alignment and domain information
>COG1001 AdeC Adenine deaminase [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK09357 pyrC dihydroorotase; Validated Back     alignment and domain information
>PRK09229 N-formimino-L-glutamate deiminase; Validated Back     alignment and domain information
>TIGR02318 phosphono_phnM phosphonate metabolism protein PhnM Back     alignment and domain information
>PRK02382 dihydroorotase; Provisional Back     alignment and domain information
>cd01315 L-HYD_ALN L-Hydantoinases (L-HYDs) and Allantoinase (ALN); L-Hydantoinases are a member of the dihydropyrimidinase family, which catalyzes the reversible hydrolytic ring opening of dihydropyrimidines and hydantoins (five-membered cyclic diamides used in biotechnology) Back     alignment and domain information
>TIGR02033 D-hydantoinase D-hydantoinase Back     alignment and domain information
>PRK09230 cytosine deaminase; Provisional Back     alignment and domain information
>cd01314 D-HYD D-hydantoinases (D-HYD) also called dihydropyrimidases (DHPase) and related proteins; DHPases are a family of enzymes that catalyze the reversible hydrolytic ring opening of the amide bond in five- or six-membered cyclic diamides, like dihydropyrimidine or hydantoin Back     alignment and domain information
>PRK08323 phenylhydantoinase; Validated Back     alignment and domain information
>PLN02599 dihydroorotase Back     alignment and domain information
>PRK15446 phosphonate metabolism protein PhnM; Provisional Back     alignment and domain information
>TIGR00857 pyrC_multi dihydroorotase, multifunctional complex type Back     alignment and domain information
>PRK06189 allantoinase; Provisional Back     alignment and domain information
>TIGR03178 allantoinase allantoinase Back     alignment and domain information
>TIGR03314 Se_ssnA putative selenium metabolism protein SsnA Back     alignment and domain information
>cd01316 CAD_DHOase The eukaryotic CAD protein is a trifunctional enzyme of carbamoylphosphate synthetase-aspartate transcarbamoylase-dihydroorotase, which catalyzes the first three steps of de novo pyrimidine nucleotide biosynthesis Back     alignment and domain information
>PRK07627 dihydroorotase; Provisional Back     alignment and domain information
>cd01296 Imidazolone-5PH Imidazolonepropionase/imidazolone-5-propionate hydrolase (Imidazolone-5PH) catalyzes the third step in the histidine degradation pathway, the hydrolysis of (S)-3-(5-oxo-4,5-dihydro-3H-imidazol-4-yl)propanoate to N-formimidoyl-L-glutamate Back     alignment and domain information
>cd01309 Met_dep_hydrolase_C Metallo-dependent hydrolases, subgroup C is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site Back     alignment and domain information
>PRK09236 dihydroorotase; Reviewed Back     alignment and domain information
>PRK08044 allantoinase; Provisional Back     alignment and domain information
>cd01318 DHOase_IIb Dihydroorotase (DHOase), subgroup IIb; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis Back     alignment and domain information
>COG0402 SsnA Cytosine deaminase and related metal-dependent hydrolases [Nucleotide transport and metabolism / General function prediction only] Back     alignment and domain information
>cd00854 NagA N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate Back     alignment and domain information
>cd01300 YtcJ_like YtcJ_like metal dependent amidohydrolases Back     alignment and domain information
>PRK09356 imidazolonepropionase; Validated Back     alignment and domain information
>PRK13207 ureC urease subunit alpha; Reviewed Back     alignment and domain information
>cd00375 Urease_alpha Urease alpha-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide Back     alignment and domain information
>COG0044 PyrC Dihydroorotase and related cyclic amidohydrolases [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK06151 N-ethylammeline chlorohydrolase; Provisional Back     alignment and domain information
>KOG4245 consensus Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only] Back     alignment and domain information
>PRK13308 ureC urease subunit alpha; Reviewed Back     alignment and domain information
>PRK14085 imidazolonepropionase; Provisional Back     alignment and domain information
>PRK09060 dihydroorotase; Validated Back     alignment and domain information
>PRK13985 ureB urease subunit beta; Provisional Back     alignment and domain information
>TIGR01792 urease_alph urease, alpha subunit Back     alignment and domain information
>PRK13404 dihydropyrimidinase; Provisional Back     alignment and domain information
>PRK09059 dihydroorotase; Validated Back     alignment and domain information
>PRK07575 dihydroorotase; Provisional Back     alignment and domain information
>PRK07328 histidinol-phosphatase; Provisional Back     alignment and domain information
>PRK04250 dihydroorotase; Provisional Back     alignment and domain information
>cd01304 FMDH_A Formylmethanofuran dehydrogenase (FMDH) subunit A; Methanogenic bacteria and archea derive the energy for autotrophic growth from methanogenesis, the reduction of CO2 with molecular hydrogen as the electron donor Back     alignment and domain information
>PRK11170 nagA N-acetylglucosamine-6-phosphate deacetylase; Provisional Back     alignment and domain information
>PRK13206 ureC urease subunit alpha; Reviewed Back     alignment and domain information
>PTZ00124 adenosine deaminase; Provisional Back     alignment and domain information
>PRK00369 pyrC dihydroorotase; Provisional Back     alignment and domain information
>PRK13404 dihydropyrimidinase; Provisional Back     alignment and domain information
>TIGR03121 one_C_dehyd_A formylmethanofuran dehydrogenase subunit A Back     alignment and domain information
>cd00443 ADA_AMPD Adenosine/AMP deaminase Back     alignment and domain information
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism] Back     alignment and domain information
>cd01306 PhnM PhnM is believed to be a subunit of the membrane associated C-P lyase complex Back     alignment and domain information
>PRK00912 ribonuclease P protein component 3; Provisional Back     alignment and domain information
>TIGR02022 hutF formiminoglutamate deiminase Back     alignment and domain information
>PF07969 Amidohydro_3: Amidohydrolase family; InterPro: IPR013108 Amidohydrolases are a diverse superfamily of enzymes which catalyse the hydrolysis of amide or amine bonds in a large number of different substrates including urea, cytosine, AMP, formylmethanofuran, etc [, ] Back     alignment and domain information
>PRK13309 ureC urease subunit alpha; Reviewed Back     alignment and domain information
>PRK08392 hypothetical protein; Provisional Back     alignment and domain information
>PF01979 Amidohydro_1: Amidohydrolase family; InterPro: IPR006680 This group of enzymes represents a large metal dependent hydrolase superfamily [] Back     alignment and domain information
>COG0418 PyrC Dihydroorotase [Nucleotide transport and metabolism] Back     alignment and domain information
>PF01244 Peptidase_M19: Membrane dipeptidase (Peptidase family M19); InterPro: IPR008257 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PRK08609 hypothetical protein; Provisional Back     alignment and domain information
>PLN02303 urease Back     alignment and domain information
>TIGR00221 nagA N-acetylglucosamine-6-phosphate deacetylase Back     alignment and domain information
>PF00962 A_deaminase: Adenosine/AMP deaminase immunodeficiency disease (SCID); InterPro: IPR001365 Adenosine deaminase (3 Back     alignment and domain information
>COG1574 Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only] Back     alignment and domain information
>PRK08123 histidinol-phosphatase; Reviewed Back     alignment and domain information
>cd01301 rDP_like renal dipeptidase (rDP), best studied in mammals and also called membrane or microsomal dipeptidase, is a membrane-bound glycoprotein hydrolyzing dipeptides and is involved in hydrolytic metabolism of penem and carbapenem beta-lactam antibiotics Back     alignment and domain information
>COG1228 HutI Imidazolonepropionase and related amidohydrolases [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>TIGR01856 hisJ_fam histidinol phosphate phosphatase HisJ family Back     alignment and domain information
>cd01321 ADGF Adenosine deaminase-related growth factors (ADGF), a novel family of secreted growth-factors with sequence similarty to adenosine deaminase Back     alignment and domain information
>PRK09856 fructoselysine 3-epimerase; Provisional Back     alignment and domain information
>PRK09248 putative hydrolase; Validated Back     alignment and domain information
>TIGR01212 radical SAM protein, TIGR01212 family Back     alignment and domain information
>COG0804 UreC Urea amidohydrolase (urease) alpha subunit [Amino acid transport and metabolism] Back     alignment and domain information
>smart00481 POLIIIAc DNA polymerase alpha chain like domain Back     alignment and domain information
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK05588 histidinol-phosphatase; Provisional Back     alignment and domain information
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac) Back     alignment and domain information
>PF02811 PHP: PHP domain; InterPro: IPR004013 The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain Back     alignment and domain information
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase Back     alignment and domain information
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase Back     alignment and domain information
>PRK07945 hypothetical protein; Provisional Back     alignment and domain information
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds [] Back     alignment and domain information
>PRK06361 hypothetical protein; Provisional Back     alignment and domain information
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional Back     alignment and domain information
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed Back     alignment and domain information
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type Back     alignment and domain information
>PRK02925 glucuronate isomerase; Reviewed Back     alignment and domain information
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional Back     alignment and domain information
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form Back     alignment and domain information
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants Back     alignment and domain information
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase Back     alignment and domain information
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases Back     alignment and domain information
>cd00408 DHDPS-like Dihydrodipicolinate synthase family Back     alignment and domain information
>COG1387 HIS2 Histidinol phosphatase and related hydrolases of the PHP family [Amino acid transport and metabolism / General function prediction only] Back     alignment and domain information
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query319
2xio_A301 Structure Of Putative Deoxyribonuclease Tatdn1 Isof 6e-89
3e2v_A401 Crystal Structure Of An Uncharacterized Amidohydrol 2e-53
3ipw_A325 Crystal Structure Of Hydrolase Tatd Family Protein 3e-49
3rcm_A287 Crystal Structure Of Efi Target 500140:tatd Family 4e-34
1xwy_A264 Crystal Structure Of Tatd Deoxyribonuclease From Es 6e-30
2gzx_A265 Crystal Structure Of The Tatd Deoxyribonuclease Mw0 1e-26
1j6o_A268 Crystal Structure Of Tatd-related Deoxyribonuclease 3e-25
1yix_A265 Crystal Structure Of Ycfh, Tatd Homolog From Escher 5e-20
1zzm_A259 Crystal Structure Of Yjjv, Tatd Homolog From Escher 1e-18
2y1h_A272 Crystal Structure Of The Human Tatd-Domain Protein 3e-06
3gg7_A254 Crystal Structure Of An Uncharacterized Metalloprot 2e-04
>pdb|2XIO|A Chain A, Structure Of Putative Deoxyribonuclease Tatdn1 Isoform A Length = 301 Back     alignment and structure 
Iteration: 1

 Score =  323 bits (829), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 153/298 (51%), Positives = 216/298 (72%), Gaps = 6/298 (2%)
Query: 4   IRLIDIAVNFTDGMFKGIYHGKQCHASDIATVLSRAWSSGVDRIIVTGGSLEESKEALAI 63
           ++ IDI +N TD MF+GIY G Q H  D+  V+ RA   GV + ++TGG+L++SK+AL +
Sbjct: 1   MKFIDIGINLTDPMFRGIYRGVQKHQDDLQDVIGRAVEIGVKKFMITGGNLQDSKDALHL 60
Query: 64  AETDGRLFCTVGVHPTRCKEFEESGDPEKHFQALLSLAKEGIEKGKVVAIGECGLDYDRL 123
           A+T+G  F TVG HPTRC EFE++ +P+ + + LL+LA+    KGKVVAIGECGLD+DRL
Sbjct: 61  AQTNGMFFSTVGCHPTRCGEFEKN-NPDLYLKELLNLAENN--KGKVVAIGECGLDFDRL 117
Query: 124 HFCPSEIQRKYFEKQFELAYATKLPMFLHMREAAADFCAIVERNKDRFTGGVTHSFTGSA 183
            FCP + Q KYFEKQFEL+  TKLPMFLH R + A+F  I +RN+DR  GGV HSF G+ 
Sbjct: 118 QFCPKDTQLKYFEKQFELSEQTKLPMFLHCRNSHAEFLDITKRNRDRCVGGVVHSFDGTK 177
Query: 184 EDRDKLLTFNMYIGINGCSLKTAENLDVVRGIPIERMMIETDSPYCEIKNAHAGISFVKS 243
           E    L+  ++YIG NGCSLKT  NL+V++ IP E++MIETD+P+C +K+ HAG  ++++
Sbjct: 178 EAAAALIDLDLYIGFNGCSLKTEANLEVLKSIPSEKLMIETDAPWCGVKSTHAGSKYIRT 237
Query: 244 TWPSKKKEKYDQDSLVKGRNEPCLVRQVLEVVAGCKGINDIDQLSRTLYHNTCRVFFP 301
            +P+KK  K++    +K RNEPC + Q+LE+++  +   D  +L+ TLY+NT +VFFP
Sbjct: 238 AFPTKK--KWESGHCLKDRNEPCHIIQILEIMSAVRD-EDPLELANTLYNNTIKVFFP 292
>pdb|3E2V|A Chain A, Crystal Structure Of An Uncharacterized Amidohydrolase From Saccharomyces Cerevisiae Length = 401 Back     alignment and structure
>pdb|3IPW|A Chain A, Crystal Structure Of Hydrolase Tatd Family Protein From Entamoeba Histolytica Length = 325 Back     alignment and structure
>pdb|3RCM|A Chain A, Crystal Structure Of Efi Target 500140:tatd Family Hydrolase From Pseudomonas Putida Length = 287 Back     alignment and structure
>pdb|1XWY|A Chain A, Crystal Structure Of Tatd Deoxyribonuclease From Escherichia Coli K12 At 2.0 A Resolution Length = 264 Back     alignment and structure
>pdb|2GZX|A Chain A, Crystal Structure Of The Tatd Deoxyribonuclease Mw0446 From Staphylococcus Aureus. Northeast Structural Genomics Consortium Target Zr237. Length = 265 Back     alignment and structure
>pdb|1J6O|A Chain A, Crystal Structure Of Tatd-related Deoxyribonuclease (tm0667) From Thermotoga Maritima At 1.8 A Resolution Length = 268 Back     alignment and structure
>pdb|1YIX|A Chain A, Crystal Structure Of Ycfh, Tatd Homolog From Escherichia Coli K12, At 1.9 A Resolution Length = 265 Back     alignment and structure
>pdb|1ZZM|A Chain A, Crystal Structure Of Yjjv, Tatd Homolog From Escherichia Coli K12, At 1.8 A Resolution Length = 259 Back     alignment and structure
>pdb|2Y1H|A Chain A, Crystal Structure Of The Human Tatd-Domain Protein 3 (Tatdn3) Length = 272 Back     alignment and structure
>pdb|3GG7|A Chain A, Crystal Structure Of An Uncharacterized Metalloprotein From Deinococcus Radiodurans Length = 254 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query319
2xio_A301 Putative deoxyribonuclease tatdn1; hydrolase; 1.19 1e-148
3ipw_A325 Hydrolase TATD family protein; niaid, ssgcid, seat 1e-141
3e2v_A401 3'-5'-exonuclease; structural genomics, hydrolase, 1e-113
3rcm_A287 TATD family hydrolase; HET: CIT; 2.05A {Pseudomona 4e-84
1xwy_A264 DNAse TATD, deoxyribonuclease TATD; TIM barrael, z 3e-81
1j6o_A268 TATD-related deoxyribonuclease; structural genomic 9e-64
1zzm_A259 Putative deoxyribonuclease YJJV; hydrolaze, zinc, 9e-63
2gzx_A265 Putative TATD related DNAse; deoxyribonuclease, NE 5e-62
1yix_A265 Deoxyribonuclease YCFH; TIM barrel, zinc ION, NEW 9e-60
2y1h_A272 Putative deoxyribonuclease tatdn3; hydrolase; 2.50 2e-59
3gg7_A254 Uncharacterized metalloprotein; structural genomic 3e-58
3guw_A261 Uncharacterized protein AF_1765; alpha-beta protei 2e-42
2vc7_A314 Aryldialkylphosphatase; phosphotriesterase, promis 1e-04
>2xio_A Putative deoxyribonuclease tatdn1; hydrolase; 1.19A {Homo sapiens} Length = 301 Back     alignment and structure
 Score =  418 bits (1077), Expect = e-148
 Identities = 152/303 (50%), Positives = 217/303 (71%), Gaps = 6/303 (1%)

Query: 4   IRLIDIAVNFTDGMFKGIYHGKQCHASDIATVLSRAWSSGVDRIIVTGGSLEESKEALAI 63
           ++ IDI +N TD MF+GIY G Q H  D+  V+ RA   GV + ++TGG+L++SK+AL +
Sbjct: 1   MKFIDIGINLTDPMFRGIYRGVQKHQDDLQDVIGRAVEIGVKKFMITGGNLQDSKDALHL 60

Query: 64  AETDGRLFCTVGVHPTRCKEFEESGDPEKHFQALLSLAKEGIEKGKVVAIGECGLDYDRL 123
           A+T+G  F TVG HPTRC EFE++ +P+ + + LL+LA+    KGKVVAIGECGLD+DRL
Sbjct: 61  AQTNGMFFSTVGCHPTRCGEFEKN-NPDLYLKELLNLAENN--KGKVVAIGECGLDFDRL 117

Query: 124 HFCPSEIQRKYFEKQFELAYATKLPMFLHMREAAADFCAIVERNKDRFTGGVTHSFTGSA 183
            FCP + Q KYFEKQFEL+  TKLPMFLH R + A+F  I +RN+DR  GGV HSF G+ 
Sbjct: 118 QFCPKDTQLKYFEKQFELSEQTKLPMFLHCRNSHAEFLDITKRNRDRCVGGVVHSFDGTK 177

Query: 184 EDRDKLLTFNMYIGINGCSLKTAENLDVVRGIPIERMMIETDSPYCEIKNAHAGISFVKS 243
           E    L+  ++YIG NGCSLKT  NL+V++ IP E++MIETD+P+C +K+ HAG  ++++
Sbjct: 178 EAAAALIDLDLYIGFNGCSLKTEANLEVLKSIPSEKLMIETDAPWCGVKSTHAGSKYIRT 237

Query: 244 TWPSKKKEKYDQDSLVKGRNEPCLVRQVLEVVAGCKGINDIDQLSRTLYHNTCRVFFPQD 303
            +P   K+K++    +K RNEPC + Q+LE+++  +   D  +L+ TLY+NT +VFFP  
Sbjct: 238 AFP--TKKKWESGHCLKDRNEPCHIIQILEIMSAVRDE-DPLELANTLYNNTIKVFFPVI 294

Query: 304 LDS 306
            ++
Sbjct: 295 AEN 297
>3ipw_A Hydrolase TATD family protein; niaid, ssgcid, seattle structural genomics center for infect disease, dysentery, liver abcess; 1.95A {Entamoeba histolytica hm-1} Length = 325 Back     alignment and structure
>3e2v_A 3'-5'-exonuclease; structural genomics, hydrolase, PSI-2, protein initiative, NEW YORK SGX research center for structural GEN nysgxrc; 1.50A {Saccharomyces cerevisiae} Length = 401 Back     alignment and structure
>3rcm_A TATD family hydrolase; HET: CIT; 2.05A {Pseudomonas putida} Length = 287 Back     alignment and structure
>1xwy_A DNAse TATD, deoxyribonuclease TATD; TIM barrael, zinc ION, structural genomics, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.1.9.12 Length = 264 Back     alignment and structure
>1j6o_A TATD-related deoxyribonuclease; structural genomics, TM0667, JCSG, PSI, protein structure initiative, joint center for structural genomics; 1.80A {Thermotoga maritima} SCOP: c.1.9.12 Length = 268 Back     alignment and structure
>1zzm_A Putative deoxyribonuclease YJJV; hydrolaze, zinc, PEG, structural genomics, PSI; HET: P33; 1.80A {Escherichia coli} SCOP: c.1.9.12 Length = 259 Back     alignment and structure
>2gzx_A Putative TATD related DNAse; deoxyribonuclease, NESG, ZR237, structural GENO PSI, protein structure initiative; 2.20A {Staphylococcus aureus subsp} Length = 265 Back     alignment and structure
>1yix_A Deoxyribonuclease YCFH; TIM barrel, zinc ION, NEW YORK SGX center for structural genomics, nysgxrc; 1.90A {Escherichia coli} SCOP: c.1.9.12 Length = 265 Back     alignment and structure
>2y1h_A Putative deoxyribonuclease tatdn3; hydrolase; 2.50A {Homo sapiens} Length = 272 Back     alignment and structure
>3gg7_A Uncharacterized metalloprotein; structural genomics, unknown function, plasmid, PSI-2, protein structure initiative; 1.50A {Deinococcus radiodurans} Length = 254 Back     alignment and structure
>3guw_A Uncharacterized protein AF_1765; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 3.20A {Archaeoglobus fulgidus dsm 4304} Length = 261 Back     alignment and structure
>2vc7_A Aryldialkylphosphatase; phosphotriesterase, promiscuous activities, enzyme evolution, hyperthermophilic, lactonase, hydrolase; HET: KCX GOL HT5; 2.05A {Sulfolobus solfataricus} PDB: 2vc5_A* Length = 314 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query319
3ipw_A325 Hydrolase TATD family protein; niaid, ssgcid, seat 100.0
3e2v_A401 3'-5'-exonuclease; structural genomics, hydrolase, 100.0
3rcm_A287 TATD family hydrolase; HET: CIT; 2.05A {Pseudomona 100.0
2xio_A301 Putative deoxyribonuclease tatdn1; hydrolase; 1.19 100.0
3gg7_A254 Uncharacterized metalloprotein; structural genomic 100.0
1xwy_A264 DNAse TATD, deoxyribonuclease TATD; TIM barrael, z 100.0
1zzm_A259 Putative deoxyribonuclease YJJV; hydrolaze, zinc, 100.0
2y1h_A272 Putative deoxyribonuclease tatdn3; hydrolase; 2.50 100.0
1j6o_A268 TATD-related deoxyribonuclease; structural genomic 100.0
3guw_A261 Uncharacterized protein AF_1765; alpha-beta protei 100.0
1yix_A265 Deoxyribonuclease YCFH; TIM barrel, zinc ION, NEW 100.0
2gzx_A265 Putative TATD related DNAse; deoxyribonuclease, NE 100.0
2ob3_A330 Parathion hydrolase; metalloenzyme, TIM barrel, ne 100.0
3k2g_A364 Resiniferatoxin-binding, phosphotriesterase- relat 100.0
3gtx_A339 Organophosphorus hydrolase; mutant, amidohydrolase 100.0
2vc7_A314 Aryldialkylphosphatase; phosphotriesterase, promis 100.0
3rhg_A365 Putative phophotriesterase; hydrolase, amidohydrol 100.0
1bf6_A291 Phosphotriesterase homology protein; hypothetical 100.0
3cjp_A272 Predicted amidohydrolase, dihydroorotase family; s 99.98
3pnz_A330 Phosphotriesterase family protein; amidohydrolase 99.98
4i6k_A294 Amidohydrolase family protein; enzyme function ini 99.97
2f6k_A307 Metal-dependent hydrolase; metal dependent hydroly 99.97
3ovg_A363 Amidohydrolase; structural genomics, PSI-2, protei 99.97
2dvt_A327 Thermophilic reversible gamma-resorcylate decarbo; 99.96
2ffi_A288 2-pyrone-4,6-dicarboxylic acid hydrolase, putativ; 99.96
3irs_A291 Uncharacterized protein BB4693; structural genomic 99.95
3tn4_A360 Phosphotriesterase; lactonase, hydrolase; HET: KCX 99.95
4do7_A303 Amidohydrolase 2; enzyme function initiative, EFI, 99.92
2gwg_A350 4-oxalomesaconate hydratase; TIM-barrel like prote 99.92
2wm1_A336 2-amino-3-carboxymuconate-6-semialdehyde decarboxy 99.91
2hbv_A334 2-amino-3-carboxymuconate 6-semialdehyde decarbox; 99.89
3nur_A357 Amidohydrolase; TIM barrel; 1.75A {Staphylococcus 99.76
3ij6_A312 Uncharacterized metal-dependent hydrolase; structu 99.73
3nqb_A 608 Adenine deaminase 2; PSI-II, structural genomics, 99.71
4inf_A373 Metal-dependent hydrolase; amidohydrolase, metal b 99.61
2ics_A379 Adenine deaminase; TIM barrel, binuclear zinc, ade 99.6
4d9a_A303 2-pyrone-4,6-dicarbaxylate hydrolase; structural g 99.57
2qpx_A376 Predicted metal-dependent hydrolase of the TIM-BA; 99.48
3hm7_A448 Allantoinase; metallo-dependent hydrolase, protein 99.47
4f0r_A447 5-methylthioadenosine/S-adenosylhomocysteine DEAM; 99.32
4dzi_A423 Putative TIM-barrel metal-dependent hydrolase; ami 99.28
2z00_A426 Dihydroorotase; zinc binding protein, hydrolase, m 99.27
3ooq_A396 Amidohydrolase; structural genomics, protein struc 99.0
3gnh_A403 L-lysine, L-arginine carboxypeptidase CC2672; N-me 98.98
3lnp_A468 Amidohydrolase family protein OLEI01672_1_465; TIM 98.97
4dzh_A472 Amidohydrolase; adenosine deaminase, nysgrc, struc 98.95
3feq_A423 Putative amidohydrolase; unknown source, sargasso 98.82
4dyk_A451 Amidohydrolase; adenosine deaminase, nysgrc, struc 98.76
3h4u_A479 Amidohydrolase; signature of Zn ligands, structura 98.75
3mpg_A428 Dihydroorotase, dhoase; hydrolase; 2.60A {Bacillus 98.75
2r8c_A426 Putative amidohydrolase; unknown source, sargasso 98.71
3ls9_A456 Triazine hydrolase; atrazine chlorohydrolase TRZN; 98.61
3be7_A408 Zn-dependent arginine carboxypeptidase; unknown so 98.55
2qt3_A403 N-isopropylammelide isopropyl amidohydrolase; N-is 98.53
2vun_A386 Enamidase; nicotinate degradation, binuclear metal 98.48
2ogj_A417 Dihydroorotase; TIM barrel, binuclear zinc, imidaz 98.42
4aql_A476 Guanine deaminase; hydrolase, purine metabolism; H 98.42
1xrt_A467 Dihydroorotase, dhoase; amidohydrolase, metalloenz 98.38
3mdu_A453 N-formimino-L-glutamate iminohydrolase; amonohydra 98.36
1gkr_A 458 Hydantoinase, non-ATP dependent L-selective hydant 98.35
2q09_A416 Imidazolonepropionase; 9252H, NYSGXRC, 3-(2, 5-dio 98.35
2i9u_A439 Cytosine/guanine deaminase related protein; protei 98.32
2vm8_A 501 Dihydropyrimidinase-related protein 2; neurogenesi 98.29
2qs8_A418 XAA-Pro dipeptidase; amidohydrolase, TIM barrel, p 98.26
2ood_A475 BLR3880 protein; PSI-II, PSI-2, guanine deaminase, 98.24
3gri_A424 Dihydroorotase, dhoase; hydrolase, IDP00795, metal 98.19
1gkp_A 458 Hydantoinase; hydrolase, dihydropyrimidinase, cycl 98.16
2z26_A347 Dihydroorotase, dhoase; TIM barrel, hydrolase; HET 98.16
2imr_A420 Hypothetical protein DR_0824; zinc, NYSGXRC, PSI2, 98.1
3sfw_A 461 Dihydropyrimidinase; hydrolase, zinc binding; HET: 98.04
2ftw_A 521 Dihydropyrimidine amidohydrolase; (beta-alpha)8-ba 98.02
2p9b_A458 Possible prolidase; protein structure initiative I 97.94
2paj_A492 Putative cytosine/guanine deaminase; NYSGXRC, PSI- 97.91
3v7p_A427 Amidohydrolase family protein; iron binding site, 97.89
1o12_A376 N-acetylglucosamine-6-phosphate deacetylase; struc 97.77
4f0l_A458 Amidohydrolase; ssgcid, structural genomics, seatt 97.68
1ra0_A430 Cytosine deaminase; alpha-beta barrel, hexamer, co 97.64
3e74_A473 Allantoinase; (beta/alpha)8-barrel domain, small b 97.6
2vr2_A 541 Dihydropyrimidinase; hydantoinase, metal-binding, 97.57
1onw_A390 Isoaspartyl dipeptidase; amidohydrolase, hydrolase 97.5
3pnu_A359 Dihydroorotase; TIM barrel, zinc binding, hydrolas 97.49
3dc8_A 490 Dihydropyrimidinase; TIM-barrel, hydrolase; HET: K 97.35
3gip_A480 N-acyl-D-glutamate deacylase; amidohydrolase famil 97.08
2fty_A 559 Dihydropyrimidinase; alpha/beta barrel, beta-sandw 97.06
3icj_A534 Uncharacterized metal-dependent hydrolase; structu 97.05
1p1m_A406 Hypothetical protein TM0936; putative metal depend 97.01
3qy7_A262 Tyrosine-protein phosphatase YWQE; TIM barrel, pol 96.9
2puz_A419 Imidazolonepropionase; NYSGXRC, PSI-2, N-formimino 96.76
2wje_A247 CPS4B, tyrosine-protein phosphatase CPSB; capsule 96.72
3rys_A343 Adenosine deaminase 1; SGX, hydrolase; HET: ADE; 2 96.56
2pgf_A371 Adenosine deaminase; metallo-dependent hydrolase, 96.31
2bb0_A421 Imidazolonepropionase; TIM barrel, hydrolase; 2.00 96.21
3iv8_A381 N-acetylglucosamine-6-phosphate deacetylase; IDP01 96.16
1nfg_A457 D-hydantoinase; TIM barrel, hydrolase; HET: KCX; 2 96.08
2i5g_A325 Amidohydrolase; NYSGXRC, NYSGXRC-9311A, PSI2, stru 96.01
2vhl_A396 N-acetylglucosamine-6-phosphate deacetylase; N- ac 96.0
3pao_A326 Adenosine deaminase; structural genomics, PSI-2, p 95.98
1rk6_A496 D-aminoacylase; TIM barrel, beta barrel, insertion 95.58
4gxw_A380 Adenosine deaminase; amidohydrolase, COG1816, EFI, 95.55
4ac7_C 570 Urease subunit alpha; hydrolase, bacillus pasteuri 95.3
4ubp_C 570 Protein (urease (chain C)); bacillus pasteurii, ni 95.3
3iar_A367 Adenosine deaminase; purine metabolism structural 94.89
2gwn_A452 Dihydroorotase; zinc-binding prote structural geno 94.77
1e9y_B 569 Urease subunit beta; hydrolase, dodecamer; HET: KC 93.7
1itu_A369 Renal dipeptidase; glycoprotein, membrane-bound, z 93.12
3neh_A318 Renal dipeptidase family protein; structural genom 92.63
2rag_A417 Dipeptidase; aminohydrolase, structural genomics, 92.3
2yb1_A292 Amidohydrolase; HET: AMP; 1.90A {Chromobacterium v 91.87
1m65_A245 Hypothetical protein YCDX; structural genomics, be 91.54
3ly0_A364 Dipeptidase AC. metallo peptidase. merops family M 90.01
2q01_A497 Uronate isomerase; structural genomics, protein st 89.88
2yxo_A267 Histidinol phosphatase; metal-dependent, hydrolase 89.14
3b40_A417 PVDM, probable dipeptidase; structural genomics, h 89.13
1j5s_A463 Uronate isomerase; TM0064, structural genomics, JC 88.65
3ngf_A269 AP endonuclease, family 2; structural genomics, se 88.5
3o0f_A301 Putative metal-dependent phosphoesterase; structur 85.68
3id7_A400 Dipeptidase; streptomyces coelicolor A3(2), hydrol 85.14
3tva_A290 Xylose isomerase domain protein TIM barrel; struct 84.74
3kws_A287 Putative sugar isomerase; structural genomics, joi 83.93
3iac_A 473 Glucuronate isomerase; IDP02065, structural genom 83.6
1j5s_A 463 Uronate isomerase; TM0064, structural genomics, JC 83.59
3dx5_A286 Uncharacterized protein ASBF; beta-alpha barrel, p 83.37
3b0x_A575 DNA polymerase beta family (X family); structural 82.39
2q01_A 497 Uronate isomerase; structural genomics, protein st 81.82
3u0h_A281 Xylose isomerase domain protein; structural genomi 81.65
2anu_A255 Hypothetical protein TM0559; predicted metal-depen 80.97
1xky_A301 Dihydrodipicolinate synthase; TIM barrel, , lysine 80.27
>3ipw_A Hydrolase TATD family protein; niaid, ssgcid, seattle structural genomics center for infect disease, dysentery, liver abcess; 1.95A {Entamoeba histolytica hm-1} Back     alignment and structure
Probab=100.00  E-value=1.3e-70  Score=514.80  Aligned_cols=292  Identities=38%  Similarity=0.626  Sum_probs=266.5

Q ss_pred             CcEEeeccCCCCccccccccCCcCCCCCHHHHHHHHHHcCCCEEEEeCCCHHhHHHHHHHHHhcC-----CeEEeeecCC
Q 020985            4 IRLIDIAVNFTDGMFKGIYHGKQCHASDIATVLSRAWSSGVDRIIVTGGSLEESKEALAIAETDG-----RLFCTVGVHP   78 (319)
Q Consensus         4 m~iiD~H~Hl~~~~~~~~~~~~~~h~~~~~~vl~~~~~~Gv~~~v~~~~~~~~~~~~~~l~~~~~-----~i~~~~GiHP   78 (319)
                      |++||+|||++...|.+.|+++.+|..|+++++++|+++||.+++++|+++++|..+++++++||     ++|+++|+||
T Consensus        26 m~~iDtH~HL~~~~f~g~y~gk~~h~~d~~~vl~rA~~aGV~~ii~~g~~~~~~~~~~~La~~~~~~~~~~v~~~~GiHP  105 (325)
T 3ipw_A           26 QQFIDIGANLTDDNYFGNYHGKHYHEEDIDVVLQRAERNGLSHIIITSGCLNDFKKAIEIINKYQNLTNIKLVTTIGVHP  105 (325)
T ss_dssp             CCEEEEEECTTSGGGGTEETTEECSCCCHHHHHHHHHHTTEEEEEECCCSHHHHHHHHHHHHHHGGGCSSEEEEEECCCG
T ss_pred             CCeEEEEECCCchHhccccccccccccCHHHHHHHHHHcCCcEEEEccCCHHHHHHHHHHHHHCCCcccceEEEEEEECc
Confidence            89999999999999999999999999999999999999999999999999999999999999999     7999999999


Q ss_pred             CCcccccccCCCHH-HHHHHHHHHHhccCCCCEEEEEeecCCCCCCCCCCHHHHHHHHHHHHHHHHc-CCCcEEEEeccc
Q 020985           79 TRCKEFEESGDPEK-HFQALLSLAKEGIEKGKVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYA-TKLPMFLHMREA  156 (319)
Q Consensus        79 ~~~~~~~~~~~~~~-~l~~l~~~l~~~~~~~~~~aIGEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~-~~~Pv~iH~r~a  156 (319)
                      |++.++.+     + ++++|++++.+  +.++++|||||||||++.++.+.+.|+++|++||++|++ +++||+||+|++
T Consensus       106 ~~~~~~~~-----~~~l~~L~~l~~~--~~~~vvAIGEiGLD~~~~~~~~~~~Q~~~F~~ql~lA~e~~~lPviiH~r~A  178 (325)
T 3ipw_A          106 TRTNELKQ-----EGYLDELLLLCEK--NIDKVVAIGEIGLDYERLQFSDKETQLSGYRTLSILHQKYPYLPFFFHCRKS  178 (325)
T ss_dssp             GGGGGGGS-----TTHHHHHHHHHHH--TGGGEEEEEEEEEETTCCSSSCHHHHHHHHHHTHHHHHHCTTCCEEEEEESC
T ss_pred             chhhcCCc-----hHHHHHHHHHHhc--CCCCEEEEEeeecCCCcCCCCCHHHHHHHHHHHHHHHHHhhCCeEEEEeCch
Confidence            99987543     3 78888888864  235899999999999876667899999999999999999 999999999999


Q ss_pred             hHHHHHHHHhccCCCcceEEEeCCCCHHHHHHHHHCCCeEeeccccccChhhHHHHhcCCCCCEEEcCCCCCcccccccc
Q 020985          157 AADFCAIVERNKDRFTGGVTHSFTGSAEDRDKLLTFNMYIGINGCSLKTAENLDVVRGIPIERMMIETDSPYCEIKNAHA  236 (319)
Q Consensus       157 ~~~~l~il~~~~~~~~~~i~H~f~g~~~~~~~~l~~g~y~s~sg~~~~~~~~~~~l~~ip~drlLlETD~P~~~~~~~~~  236 (319)
                      .++++++|++++....++|+|||+|+.+++++++++|+||||+|+++++.+.+++++.+|+||||+|||+||+.|.|.+.
T Consensus       179 ~~d~l~iL~~~~~~~~~gViH~FsGs~e~a~~~l~lG~yis~~G~~~k~~~~~~~v~~iPldrlLlETDaP~l~~~~~~~  258 (325)
T 3ipw_A          179 WSDLCQLNKELGYNGCKGVVHCFDGTEEEMNQILNEGWDIGVTGNSLQSIELLNVMKQIPIERLHIETDCPYCGIKKTSA  258 (325)
T ss_dssp             HHHHHHHHHHTTCTTSCEEECSCCCCHHHHHHHHHTTCEEEECSGGGSSHHHHHHHTTSCGGGEEECCCTTSCCCCTTSG
T ss_pred             HHHHHHHHHhcCCCCCcEEEEECCCCHHHHHHHHhcCcEEeeCccccCcHHHHHHHHhCCcccEEEeCCCcccccccccc
Confidence            99999999998654457899999999999999999999999999888877778999999999999999999999999889


Q ss_pred             ccccccccCCCcccccccccccCCCCCccchHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhcCCCC
Q 020985          237 GISFVKSTWPSKKKEKYDQDSLVKGRNEPCLVRQVLEVVAGCKGINDIDQLSRTLYHNTCRVFFPQD  303 (319)
Q Consensus       237 ~~~~~~~~l~~~~~~k~~~~~~~~~~n~P~~l~~v~~~iA~~~~is~~e~~~~~~~~N~~rlf~~~~  303 (319)
                      +++|++++.|..++.||..+...+++|+|++|+.|++.||+++|++ .+++++++++|+.+||++..
T Consensus       259 ~~~~~~~p~p~r~~~k~~~~~~~g~rNeP~~v~~v~~~iA~l~g~~-~eeva~~t~~Na~~lF~~~~  324 (325)
T 3ipw_A          259 GFKYLKEKDFGVKVEKYQRNKYVQRRNEPSNIIDIAIIMSSIKHIS-LFEFVNKVYSNSMNMYFPTM  324 (325)
T ss_dssp             GGGGCSSCCCCBCGGGCCTTSCBTTCCCGGGHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHHSCC-
T ss_pred             chhcccccCccccccccccccccCCcCcHHHHHHHHHHHHHhhCcC-HHHHHHHHHHHHHHHhCcCC
Confidence            9999888766555567777666677999999999999999999999 99999999999999998753
>3e2v_A 3'-5'-exonuclease; structural genomics, hydrolase, PSI-2, protein initiative, NEW YORK SGX research center for structural GEN nysgxrc; 1.50A {Saccharomyces cerevisiae} Back     alignment and structure
>3rcm_A TATD family hydrolase; HET: CIT; 2.05A {Pseudomonas putida} Back     alignment and structure
>2xio_A Putative deoxyribonuclease tatdn1; hydrolase; 1.19A {Homo sapiens} Back     alignment and structure
>3gg7_A Uncharacterized metalloprotein; structural genomics, unknown function, plasmid, PSI-2, protein structure initiative; 1.50A {Deinococcus radiodurans} SCOP: c.1.9.0 Back     alignment and structure
>1xwy_A DNAse TATD, deoxyribonuclease TATD; TIM barrael, zinc ION, structural genomics, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.1.9.12 Back     alignment and structure
>1zzm_A Putative deoxyribonuclease YJJV; hydrolaze, zinc, PEG, structural genomics, PSI; HET: P33; 1.80A {Escherichia coli} SCOP: c.1.9.12 Back     alignment and structure
>2y1h_A Putative deoxyribonuclease tatdn3; hydrolase; 2.50A {Homo sapiens} Back     alignment and structure
>1j6o_A TATD-related deoxyribonuclease; structural genomics, TM0667, JCSG, PSI, protein structure initiative, joint center for structural genomics; 1.80A {Thermotoga maritima} SCOP: c.1.9.12 Back     alignment and structure
>3guw_A Uncharacterized protein AF_1765; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 3.20A {Archaeoglobus fulgidus dsm 4304} Back     alignment and structure
>1yix_A Deoxyribonuclease YCFH; TIM barrel, zinc ION, NEW YORK SGX center for structural genomics, nysgxrc; 1.90A {Escherichia coli} SCOP: c.1.9.12 Back     alignment and structure
>2gzx_A Putative TATD related DNAse; deoxyribonuclease, NESG, ZR237, structural GENO PSI, protein structure initiative; 2.20A {Staphylococcus aureus subsp} Back     alignment and structure
>2ob3_A Parathion hydrolase; metalloenzyme, TIM barrel, nerve agents; HET: KCX BTB; 1.04A {Brevundimonas diminuta} PDB: 1psc_A* 1jgm_A* 3cak_A* 1ez2_A* 1eyw_A* 1hzy_A 1i0b_A 1i0d_A 1p6b_A* 1p6c_A* 2oql_A* 2o4q_A* 3cs2_A* 3e3h_A* 1qw7_A* 1dpm_A* 2o4m_A* 1pta_A 3c86_A* 2d2j_A ... Back     alignment and structure
>3k2g_A Resiniferatoxin-binding, phosphotriesterase- related protein; TIM barrel, binuclear zinc, protein structure initiative II (PSI II); 1.80A {Rhodobacter sphaeroides 2} Back     alignment and structure
>3gtx_A Organophosphorus hydrolase; mutant, amidohydrolase, alpha-beta barrel; HET: KCX; 1.62A {Deinococcus radiodurans} PDB: 2zc1_A* 3gti_A* 3gu9_A* 3gtf_A* 3gth_A* 3gu2_A* 3gu1_A* 3fdk_A* 3htw_A* Back     alignment and structure
>2vc7_A Aryldialkylphosphatase; phosphotriesterase, promiscuous activities, enzyme evolution, hyperthermophilic, lactonase, hydrolase; HET: KCX GOL HT5; 2.05A {Sulfolobus solfataricus} PDB: 2vc5_A* Back     alignment and structure
>3rhg_A Putative phophotriesterase; hydrolase, amidohydrolase, zinc binding site, enzyme functio initiative, EFI; HET: SO4; 1.53A {Proteus mirabilis} Back     alignment and structure
>1bf6_A Phosphotriesterase homology protein; hypothetical protein; 1.70A {Escherichia coli} SCOP: c.1.9.3 Back     alignment and structure
>3cjp_A Predicted amidohydrolase, dihydroorotase family; structural genomics, protein structure initiative; 1.85A {Clostridium acetobutylicum atcc 824} Back     alignment and structure
>3pnz_A Phosphotriesterase family protein; amidohydrolase fold; HET: KCX; 1.60A {Listeria monocytogenes serotype 4b strorganism_taxid} SCOP: c.1.9.0 Back     alignment and structure
>4i6k_A Amidohydrolase family protein; enzyme function initiative, isomerase, structural; HET: CIT; 2.28A {Acinetobacter baumannii} Back     alignment and structure
>2f6k_A Metal-dependent hydrolase; metal dependent hydrolyse, aminohydro_2, ACMDS, ACMS, trypto metabolism, quinolinic acid, QUIN; 2.50A {Lactobacillus plantarum} SCOP: c.1.9.15 Back     alignment and structure
>3ovg_A Amidohydrolase; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, NYSGXRC, HAD, PSI; HET: KCX; 2.06A {Mycoplasma synoviae} PDB: 3msr_A* Back     alignment and structure
>2dvt_A Thermophilic reversible gamma-resorcylate decarbo; TIM barrel, lyase; 1.70A {Rhizobium SP} SCOP: c.1.9.15 PDB: 2dvu_A* 2dvx_A* 3s4t_A* Back     alignment and structure
>2ffi_A 2-pyrone-4,6-dicarboxylic acid hydrolase, putativ; TIM-barrel protein., structural genomics, PSI, protein struc initiative; 2.61A {Pseudomonas putida} SCOP: c.1.9.15 Back     alignment and structure
>3irs_A Uncharacterized protein BB4693; structural genomics, PSI-2, protein structure initiative, TI protein; HET: GOL; 1.76A {Bordetella bronchiseptica} PDB: 3k4w_A Back     alignment and structure
>3tn4_A Phosphotriesterase; lactonase, hydrolase; HET: KCX; 1.50A {Geobacillus kaustophilus} PDB: 3tnb_A* 3tn3_A* 3tn5_A* 3tn6_A* 3ojg_A* 3orw_A* 3f4c_A* 3f4d_A* Back     alignment and structure
>4do7_A Amidohydrolase 2; enzyme function initiative, EFI, structural TIM-barrel fold, putative lactonase; 1.70A {Burkholderia multivorans} PDB: 4dlm_A 4dnm_A* 4dlf_A Back     alignment and structure
>2gwg_A 4-oxalomesaconate hydratase; TIM-barrel like protein, structural genomics, PSI, protein S initiative; 1.80A {Rhodopseudomonas palustris} SCOP: c.1.9.15 Back     alignment and structure
>2wm1_A 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase; neurological disorders, metal-dependent amidohydrolase, kynurenine pathway; HET: 13P; 2.01A {Homo sapiens} Back     alignment and structure
>2hbv_A 2-amino-3-carboxymuconate 6-semialdehyde decarbox; ACMSD, TIM-barrel, decarboxylase, metaloenzyme, lyase; 1.65A {Pseudomonas fluorescens} SCOP: c.1.9.15 PDB: 2hbx_A Back     alignment and structure
>3nur_A Amidohydrolase; TIM barrel; 1.75A {Staphylococcus aureus} Back     alignment and structure
>3ij6_A Uncharacterized metal-dependent hydrolase; structural genomics, amidohydrolase, PSI-2, protein structure initiative; 2.00A {Lactobacillus acidophilus} Back     alignment and structure
>3nqb_A Adenine deaminase 2; PSI-II, structural genomics, protein structure initiative, N SGX research center for structural genomics, nysgxrc; 2.21A {Agrobacterium tumefaciens} PDB: 3t81_A 3t8l_A Back     alignment and structure
>4inf_A Metal-dependent hydrolase; amidohydrolase, metal binding site, enzyme functi initiative, EFI; 1.48A {Novosphingobium aromaticivorans} PDB: 4ing_A* Back     alignment and structure
>2ics_A Adenine deaminase; TIM barrel, binuclear zinc, adenine complex, amidohydrolase, structural genomics, PSI, protein structure initiative; HET: KCX ADE; 2.30A {Enterococcus faecalis} SCOP: b.92.1.8 c.1.9.14 Back     alignment and structure
>2qpx_A Predicted metal-dependent hydrolase of the TIM-BA; YP_805737.1, putative metal-dependent hydrolase; HET: KCX MSE; 1.40A {Lactobacillus casei} Back     alignment and structure
>3hm7_A Allantoinase; metallo-dependent hydrolase, protein structure initiative, PSI-2, NEW YORK structural genomix research CON nysgxrc; 2.60A {Bacillus halodurans} Back     alignment and structure
>4f0r_A 5-methylthioadenosine/S-adenosylhomocysteine DEAM; structural genomics, PSI-biology; HET: MSE MTA; 1.80A {Chromobacterium violaceum} PDB: 4f0s_A* Back     alignment and structure
>4dzi_A Putative TIM-barrel metal-dependent hydrolase; amidohydrolase, bimetal binding site, enzyme FUNC initiative, EFI; HET: SO4; 1.60A {Mycobacterium avium subsp} Back     alignment and structure
>2z00_A Dihydroorotase; zinc binding protein, hydrolase, metal-binding, pyrimidine biosynthesis, structural genomics, NPPSFA; 2.42A {Thermus thermophilus} Back     alignment and structure
>3ooq_A Amidohydrolase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, H PSI-2; 2.06A {Thermotoga maritima} Back     alignment and structure
>3lnp_A Amidohydrolase family protein OLEI01672_1_465; TIM barrel, beta-fold, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Oleispira antarctica} Back     alignment and structure
>4dzh_A Amidohydrolase; adenosine deaminase, nysgrc, structural GENO YORK structural genomics research consortium; 1.55A {Xanthomonas campestris PV} Back     alignment and structure
>3feq_A Putative amidohydrolase; unknown source, sargasso SEA, structural GEN protein structure initiative, PSI; 2.63A {Unidentified} PDB: 3lwy_A* 3n2c_A* Back     alignment and structure
>4dyk_A Amidohydrolase; adenosine deaminase, nysgrc, structural GENO PSI-biology, NEW YORK structural genomics research consorti hydrolase; 2.00A {Pseudomonas aeruginosa} Back     alignment and structure
>3mpg_A Dihydroorotase, dhoase; hydrolase; 2.60A {Bacillus anthracis} Back     alignment and structure
>2r8c_A Putative amidohydrolase; unknown source, sargasso SEA, structural genomics, protein structure initiative, PSI; 2.31A {Unidentified} PDB: 3mkv_A* Back     alignment and structure
>3ls9_A Triazine hydrolase; atrazine chlorohydrolase TRZN; 1.40A {Arthrobacter aurescens} PDB: 3lsc_A* 3lsb_A* Back     alignment and structure
>3be7_A Zn-dependent arginine carboxypeptidase; unknown source, amidohydrolase, sargasso SEA, structural GEN protein structure initiative, PSI; HET: ARG; 2.30A {Unidentified} SCOP: b.92.1.9 c.1.9.18 PDB: 3dug_A* Back     alignment and structure
>2qt3_A N-isopropylammelide isopropyl amidohydrolase; N-isopropylammelide isopropylaminohydrolase ATZC, structural genomics, NYSGXRC, target 9364B; 2.24A {Pseudomonas SP} Back     alignment and structure
>2vun_A Enamidase; nicotinate degradation, binuclear metal center, amidohydrolases, stereospecificity, hydrolase; 1.89A {Eubacterium barkeri} Back     alignment and structure
>2ogj_A Dihydroorotase; TIM barrel, binuclear zinc, imidazole complex, amido hydrola 9244B, structural genomics, PSI-2; HET: KCX; 2.62A {Agrobacterium tumefaciens} Back     alignment and structure
>4aql_A Guanine deaminase; hydrolase, purine metabolism; HET: TXC; 1.99A {Homo sapiens} PDB: 2uz9_A* 3e0l_A Back     alignment and structure
>1xrt_A Dihydroorotase, dhoase; amidohydrolase, metalloenzyme, pyrimidine; 1.61A {Aquifex aeolicus} SCOP: b.92.1.3 c.1.9.6 PDB: 1xrf_A 3d6n_A* Back     alignment and structure
>3mdu_A N-formimino-L-glutamate iminohydrolase; amonohydralase family, N-formimino-L-glutamate iminohydrolas guanidino-L-glutamate; HET: NGQ; 1.40A {Pseudomonas aeruginosa} PDB: 3mdw_A* Back     alignment and structure
>1gkr_A Hydantoinase, non-ATP dependent L-selective hydantoinase; hydrolase, dihydropyrimidinase, cyclic amidase; HET: KCX; 2.60A {Arthrobacter aurescens} SCOP: b.92.1.3 c.1.9.6 Back     alignment and structure
>2q09_A Imidazolonepropionase; 9252H, NYSGXRC, 3-(2, 5-dioxo-imidazo 4YL)-propionic acid, PSI-2 community, structural genomics, structure initiative; HET: DI6; 1.97A {Unidentified} SCOP: b.92.1.10 c.1.9.17 PDB: 2oof_A* Back     alignment and structure
>2i9u_A Cytosine/guanine deaminase related protein; protein structure initiative II (PSI-II), amidohydrol guanine deaminase; HET: GUN; 2.05A {Clostridium acetobutylicum} SCOP: b.92.1.4 c.1.9.9 Back     alignment and structure
>2vm8_A Dihydropyrimidinase-related protein 2; neurogenesis, phosphoprotein, differentiation, CRMP, cytoplasm, TIM barrel, polymorphism, axonal pathfinding; 1.9A {Homo sapiens} PDB: 2gse_A 1kcx_A Back     alignment and structure
>2qs8_A XAA-Pro dipeptidase; amidohydrolase, TIM barrel, protein structure initiative, PSI-2, NYSGXRC, structural genomics; 2.33A {Alteromonas macleodii} SCOP: b.92.1.9 c.1.9.18 Back     alignment and structure
>2ood_A BLR3880 protein; PSI-II, PSI-2, guanine deaminase, guanine, structural genomics, protein structure initiative; HET: GUN; 2.62A {Bradyrhizobium japonicum} SCOP: b.92.1.4 c.1.9.9 Back     alignment and structure
>3gri_A Dihydroorotase, dhoase; hydrolase, IDP00795, metal-binding, pyrimidine biosynthesis, structural genomics; 2.00A {Staphylococcus aureus subsp} Back     alignment and structure
>1gkp_A Hydantoinase; hydrolase, dihydropyrimidinase, cyclic amidase; HET: KCX EPE; 1.29A {Thermus SP} SCOP: b.92.1.3 c.1.9.6 PDB: 1gkq_A* Back     alignment and structure
>2z26_A Dihydroorotase, dhoase; TIM barrel, hydrolase; HET: KCX DOR NCD; 1.29A {Escherichia coli} PDB: 2z24_A* 2z25_A* 2eg6_A* 1xge_A* 2eg7_A* 2eg8_A* 2z27_A* 2e25_A* 2z28_A* 2z29_A* 3mjm_A* 2z2a_A* 1j79_A* 2z2b_A* 3ihn_A* 3jze_A* Back     alignment and structure
>2imr_A Hypothetical protein DR_0824; zinc, NYSGXRC, PSI2, structural genomics, protein structure initiative; 1.78A {Deinococcus radiodurans} SCOP: b.92.1.11 c.1.9.16 Back     alignment and structure
>3sfw_A Dihydropyrimidinase; hydrolase, zinc binding; HET: KCX; 1.73A {Brevibacillus agri} PDB: 1yny_A 1k1d_A* Back     alignment and structure
>2ftw_A Dihydropyrimidine amidohydrolase; (beta-alpha)8-barrel, beta-sandwich; HET: KCX; 2.05A {Dictyostelium discoideum} SCOP: b.92.1.3 c.1.9.6 Back     alignment and structure
>2p9b_A Possible prolidase; protein structure initiative II, PSI-2, amidohydrolase, structural genomics; 1.70A {Bifidobacterium longum NCC2705} SCOP: b.92.1.10 c.1.9.17 Back     alignment and structure
>2paj_A Putative cytosine/guanine deaminase; NYSGXRC, PSI-II, amidohydrolase, sargasso SEA, enviro sample, structural genomics; 2.70A {Unidentified} SCOP: b.92.1.4 c.1.9.9 Back     alignment and structure
>3v7p_A Amidohydrolase family protein; iron binding site, enzyme functio initiative, EFI; HET: TLA; 1.35A {Nitratiruptor SP} Back     alignment and structure
>1o12_A N-acetylglucosamine-6-phosphate deacetylase; structural genomics, TM0814, JCSG, PSI, protein structure initiative; 2.50A {Thermotoga maritima} SCOP: b.92.1.5 c.1.9.10 Back     alignment and structure
>4f0l_A Amidohydrolase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.05A {Brucella melitensis biovar abortus} Back     alignment and structure
>1ra0_A Cytosine deaminase; alpha-beta barrel, hexamer, conformation change, D314G mutant, hydrolase; 1.12A {Escherichia coli} SCOP: b.92.1.2 c.1.9.5 PDB: 1r9x_A 1ra5_A 1r9y_A 1r9z_A 1rak_A 3r0d_A* 3o7u_A* 3rn6_A* 1k6w_A 1k70_A 3g77_A Back     alignment and structure
>3e74_A Allantoinase; (beta/alpha)8-barrel domain, small beta-sheet domain, hydrolase, metal-binding, purine metabolism, zinc; HET: KCX; 2.10A {Escherichia coli} Back     alignment and structure
>2vr2_A Dihydropyrimidinase; hydantoinase, metal-binding, disease mutation, dihydropyrimi amidohydrolase, nucleotide metabolism, DPYS, dhpase, hydrolase; 2.80A {Homo sapiens} Back     alignment and structure
>1onw_A Isoaspartyl dipeptidase; amidohydrolase, hydrolase, metalloprotease; HET: KCX; 1.65A {Escherichia coli} SCOP: b.92.1.7 c.1.9.13 PDB: 1onx_A* 1po9_A* 1poj_A* 1pok_B* 2aqo_A* 1ybq_A* 2aqv_A* Back     alignment and structure
>3pnu_A Dihydroorotase; TIM barrel, zinc binding, hydrolase, structu genomics, center for structural genomics of infectious DISE csgid; HET: KCX; 2.40A {Campylobacter jejuni subsp} Back     alignment and structure
>3dc8_A Dihydropyrimidinase; TIM-barrel, hydrolase; HET: KCX; 1.85A {Sinorhizobium meliloti} Back     alignment and structure
>3gip_A N-acyl-D-glutamate deacylase; amidohydrolase family, hydrolase; 1.50A {Bordetella bronchiseptica} PDB: 3giq_A* Back     alignment and structure
>2fty_A Dihydropyrimidinase; alpha/beta barrel, beta-sandwich, hydrolase; HET: KCX; 2.40A {Lachancea kluyveri} SCOP: b.92.1.3 c.1.9.6 PDB: 2fvk_A* 2fvm_A* Back     alignment and structure
>3icj_A Uncharacterized metal-dependent hydrolase; structural genomics, amidohydrolase, PSI-2, protein structur initiative; HET: KCX; 1.95A {Pyrococcus furiosus} PDB: 3etk_A* 3igh_X* Back     alignment and structure
>1p1m_A Hypothetical protein TM0936; putative metal dependent hydrolase, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: b.92.1.4 c.1.9.9 PDB: 2plm_A* 1j6p_A Back     alignment and structure
>3qy7_A Tyrosine-protein phosphatase YWQE; TIM barrel, polymerase and histindinol phosphatase(PHP)-like phosphatase, hydrolase; 1.62A {Bacillus subtilis} PDB: 3qy6_A Back     alignment and structure
>2puz_A Imidazolonepropionase; NYSGXRC, PSI-2, N-formimino-L- glutamate, product-bound, structural genomics, protein STRU initiative; HET: NIG; 1.83A {Agrobacterium tumefaciens str} SCOP: b.92.1.10 c.1.9.17 PDB: 2gok_A Back     alignment and structure
>2wje_A CPS4B, tyrosine-protein phosphatase CPSB; capsule biogenesis/degradation, manganese, hydrolase, exopolysaccharide synthesis; 1.90A {Streptococcus pneumoniae} PDB: 2wjd_A 2wjf_A 3qy8_A Back     alignment and structure
>3rys_A Adenosine deaminase 1; SGX, hydrolase; HET: ADE; 2.60A {Arthrobacter aurescens} SCOP: c.1.9.0 Back     alignment and structure
>2pgf_A Adenosine deaminase; metallo-dependent hydrolase, structural genomics, medical ST genomics of pathogenic protozoa consortium, MSGPP; HET: MSE ADN; 1.89A {Plasmodium vivax} PDB: 2pgr_A* 2qvn_A* 3ewc_A* 3ewd_A* 2amx_A Back     alignment and structure
>2bb0_A Imidazolonepropionase; TIM barrel, hydrolase; 2.00A {Bacillus subtilis} SCOP: b.92.1.10 c.1.9.17 PDB: 2g3f_A Back     alignment and structure
>3iv8_A N-acetylglucosamine-6-phosphate deacetylase; IDP01334, fruct phosphate, carbohydrate metabolism, hydrolase; HET: F6P; 2.53A {Vibrio cholerae} PDB: 3egj_A* Back     alignment and structure
>1nfg_A D-hydantoinase; TIM barrel, hydrolase; HET: KCX; 2.70A {Ralstonia pickettii} SCOP: b.92.1.3 c.1.9.6 Back     alignment and structure
>2i5g_A Amidohydrolase; NYSGXRC, NYSGXRC-9311A, PSI2, structural genomics, protein structure initiative; 2.60A {Pseudomonas aeruginosa} Back     alignment and structure
>2vhl_A N-acetylglucosamine-6-phosphate deacetylase; N- acetyleglucosamine-6-phosphate, carbohydrate metabolism, hydrolase; HET: GLP PGE; 2.05A {Bacillus subtilis} Back     alignment and structure
>3pao_A Adenosine deaminase; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; HET: ADE; 2.49A {Pseudomonas aeruginosa} PDB: 3pan_A* 3ou8_A* 3pbm_A* Back     alignment and structure
>1rk6_A D-aminoacylase; TIM barrel, beta barrel, insertion, hydrolase; 1.43A {Alcaligenes faecalis} SCOP: b.92.1.6 b.92.1.6 c.1.9.11 PDB: 1rjp_A 1v51_A 1rjq_A 1rjr_A 1rk5_A 1v4y_A 1m7j_A Back     alignment and structure
>4gxw_A Adenosine deaminase; amidohydrolase, COG1816, EFI, structural genomics, hydrolase; 1.30A {Burkholderia ambifaria} Back     alignment and structure
>4ac7_C Urease subunit alpha; hydrolase, bacillus pasteurii; HET: CXM KCX FLC; 1.50A {Sporosarcina pasteurii} PDB: 1s3t_C* 2ubp_C* 3ubp_C* 1ubp_C* 4ubp_C* 1ie7_C* Back     alignment and structure
>4ubp_C Protein (urease (chain C)); bacillus pasteurii, nickel, acetohydroxamic acid, metalloenzyme, hydrolase; HET: KCX; 1.55A {Sporosarcina pasteurii} SCOP: b.92.1.1 c.1.9.2 PDB: 1s3t_C* 2ubp_C* 3ubp_C* 1ubp_C* 1ie7_C* Back     alignment and structure
>3iar_A Adenosine deaminase; purine metabolism structural genomics, structural genomics consortium, SGC, D mutation, hereditary hemolytic anemia, hydrolase; HET: 3D1; 1.52A {Homo sapiens} SCOP: c.1.9.1 PDB: 2bgn_E* 1w1i_E* 1qxl_A* 1krm_A* 1vfl_A 1ndv_A* 1ndy_A* 1ndz_A* 1o5r_A* 1uml_A* 1v79_A* 1v7a_A* 1ndw_A 1wxy_A* 1wxz_A* 2e1w_A* 2z7g_A* 2ada_A* 3mvi_A 1a4l_A* ... Back     alignment and structure
>2gwn_A Dihydroorotase; zinc-binding prote structural genomics, PSI, protein structure initiative, MID center for structural genomics, MCSG; HET: KCX GOL; 1.85A {Porphyromonas gingivalis} Back     alignment and structure
>1e9y_B Urease subunit beta; hydrolase, dodecamer; HET: KCX; 3.00A {Helicobacter pylori} SCOP: b.92.1.1 c.1.9.2 PDB: 1e9z_B* 3qga_C* 3qgk_C* Back     alignment and structure
>1itu_A Renal dipeptidase; glycoprotein, membrane-bound, zinc protease BET lactamase, cilastatin, complex (hydrolase-inhibitor), hydro; HET: NAG CIL; 2.00A {Homo sapiens} SCOP: c.1.9.7 PDB: 1itq_A* Back     alignment and structure
>3neh_A Renal dipeptidase family protein; structural genomics, nysgrc, dipeptide L-Leu-D-Ala, PSI-2, P structure initiative; HET: L3A; 1.64A {Listeria monocytogenes} PDB: 3lu2_A Back     alignment and structure
>2rag_A Dipeptidase; aminohydrolase, structural genomics, NYSGXRC, target 9257A, protein structure initiative; 2.00A {Caulobacter crescentus} Back     alignment and structure
>2yb1_A Amidohydrolase; HET: AMP; 1.90A {Chromobacterium violaceum} PDB: 2yb4_A Back     alignment and structure
>1m65_A Hypothetical protein YCDX; structural genomics, beta-alpha-barrel, metallo-enzyme, STRU function project, S2F, unknown function; 1.57A {Escherichia coli} SCOP: c.6.3.1 PDB: 1m68_A 1pb0_A Back     alignment and structure
>3ly0_A Dipeptidase AC. metallo peptidase. merops family M19; structural genomics, nysgrc, target 9523C, phosphinate inhibitor, PSI-2; HET: LY0; 1.40A {Rhodobacter sphaeroides} PDB: 3fdg_A Back     alignment and structure
>2q01_A Uronate isomerase; structural genomics, protein structure initiative NEW YORK SGX research center for structural genomics, nysgx; 2.34A {Caulobacter crescentus} Back     alignment and structure
>2yxo_A Histidinol phosphatase; metal-dependent, hydrolase; 1.60A {Thermus thermophilus} PDB: 2yz5_A 2z4g_A Back     alignment and structure
>3b40_A PVDM, probable dipeptidase; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.00A {Pseudomonas aeruginosa} Back     alignment and structure
>1j5s_A Uronate isomerase; TM0064, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.85A {Thermotoga maritima} SCOP: c.1.9.8 Back     alignment and structure
>3ngf_A AP endonuclease, family 2; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 1.80A {Brucella melitensis biovar abortus} SCOP: c.1.15.0 Back     alignment and structure
>3o0f_A Putative metal-dependent phosphoesterase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: AMP; 1.94A {Bifidobacterium adolescentis} PDB: 3e0f_A* Back     alignment and structure
>3id7_A Dipeptidase; streptomyces coelicolor A3(2), hydrolase; 1.30A {Streptomyces coelicolor} PDB: 3isi_X* 3itc_A* 3k5x_A* 3s2j_A* 3s2l_A* 3s2m_A* 3s2n_A* Back     alignment and structure
>3tva_A Xylose isomerase domain protein TIM barrel; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.15A {Planctomyces limnophilus} Back     alignment and structure
>3kws_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.68A {Parabacteroides distasonis atcc 8503} Back     alignment and structure
>3iac_A Glucuronate isomerase; IDP02065, structural genom center for structural genomics of infectious diseases, CSGI; 2.22A {Salmonella typhimurium} SCOP: c.1.9.0 Back     alignment and structure
>1j5s_A Uronate isomerase; TM0064, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.85A {Thermotoga maritima} SCOP: c.1.9.8 Back     alignment and structure
>3dx5_A Uncharacterized protein ASBF; beta-alpha barrel, petrobactin synthesis, ASB locus, structu genomics, PSI-2, protein structure initiative; HET: MSE DHB TRS; 2.12A {Bacillus anthracis} Back     alignment and structure
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A* Back     alignment and structure
>2q01_A Uronate isomerase; structural genomics, protein structure initiative NEW YORK SGX research center for structural genomics, nysgx; 2.34A {Caulobacter crescentus} Back     alignment and structure
>3u0h_A Xylose isomerase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, TIM barrel; 2.30A {Alicyclobacillus acidocaldarius subsp} Back     alignment and structure
>2anu_A Hypothetical protein TM0559; predicted metal-dependent phosphoesterase (PHP famil structural genomics, joint center for structural genomics; 2.40A {Thermotoga maritima} SCOP: c.6.3.1 Back     alignment and structure
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 319
d1xwya1260 c.1.9.12 (A:1-260) Deoxyribonuclease TatD (MttC) { 2e-39
d1j6oa_260 c.1.9.12 (A:) Hypothetical protein TM0667 {Thermot 3e-38
d1yixa1265 c.1.9.12 (A:1-265) Putative deoxyribonuclease YcfH 1e-31
d1zzma1259 c.1.9.12 (A:1-259) Putative deoxyribonuclease YjjV 4e-29
d1bf6a_291 c.1.9.3 (A:) Phosphotriesterase homology protein { 6e-25
>d1xwya1 c.1.9.12 (A:1-260) Deoxyribonuclease TatD (MttC) {Escherichia coli [TaxId: 562]} Length = 260 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: TatD Mg-dependent DNase-like
domain: Deoxyribonuclease TatD (MttC)
species: Escherichia coli [TaxId: 562]

 Score =  137 bits (346), Expect = 2e-39
 Identities = 83/297 (27%), Positives = 137/297 (46%), Gaps = 44/297 (14%)

Query: 6   LIDIAVNFTDGMFKGIYHGKQCHASDIATVLSRAWSSGVDRIIVTGGSLEESKEALAIAE 65
           + DI VN T   F            D   V++ A+ +GV+ +++TG +L ES++A  +A 
Sbjct: 1   MFDIGVNLTSSQFAK----------DRDDVVACAFDAGVNGLLITGTNLRESQQAQKLAR 50

Query: 66  TDGRLFCTVGVHPTRCKEFEESGDPEKHFQALLSLAKEGIEKGKVVAIGECGLDYDRLHF 125
                + T GVHP    +++ + +      A          + +VVAIGECGLD++R   
Sbjct: 51  QYSSCWSTAGVHPHDSSQWQAATEEAIIELA---------AQPEVVAIGECGLDFNRNFS 101

Query: 126 CPSEIQRKYFEKQFELAYATKLPMFLHMREAAADFCAIVERNKDRFTGGVTHSFTGSAED 185
            P E +R +   Q  +A    +P+F+H R+A   F  ++E   D+  G V H FTG+ E+
Sbjct: 102 TPEEQERAFVA-QLRIAADLNMPVFMHCRDAHERFMTLLEPWLDKLPGAVLHCFTGTREE 160

Query: 186 RDKLLTFNMYIGINGCSLKTAENL---DVVRGIPIERMMIETDSPYCEIKNAHAGISFVK 242
               +   +YIGI G        L   +++  IP E+++IETD+PY   ++         
Sbjct: 161 MQACVAHGIYIGITGWVCDERRGLELRELLPLIPAEKLLIETDAPYLLPRD--------- 211

Query: 243 STWPSKKKEKYDQDSLVKGRNEPCLVRQVLEVVAGCKGINDIDQLSRTLYHNTCRVF 299
                K   +         RNEP  +  +L+ +A  +G  D   L+ T   N   +F
Sbjct: 212 --LTPKPSSR---------RNEPAHLPHILQRIAHWRGE-DAAWLAATTDANVKTLF 256
>d1j6oa_ c.1.9.12 (A:) Hypothetical protein TM0667 {Thermotoga maritima [TaxId: 2336]} Length = 260 Back     information, alignment and structure
>d1yixa1 c.1.9.12 (A:1-265) Putative deoxyribonuclease YcfH {Escherichia coli [TaxId: 562]} Length = 265 Back     information, alignment and structure
>d1zzma1 c.1.9.12 (A:1-259) Putative deoxyribonuclease YjjV {Escherichia coli [TaxId: 562]} Length = 259 Back     information, alignment and structure
>d1bf6a_ c.1.9.3 (A:) Phosphotriesterase homology protein {Escherichia coli [TaxId: 562]} Length = 291 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query319
d1xwya1260 Deoxyribonuclease TatD (MttC) {Escherichia coli [T 100.0
d1j6oa_260 Hypothetical protein TM0667 {Thermotoga maritima [ 100.0
d1yixa1265 Putative deoxyribonuclease YcfH {Escherichia coli 100.0
d1zzma1259 Putative deoxyribonuclease YjjV {Escherichia coli 100.0
d1bf6a_291 Phosphotriesterase homology protein {Escherichia c 100.0
d1i0da_331 Phosphotriesterase (parathion hydrolase, PTE) {Pse 99.9
d2ffia1271 Putative 2-pyrone-4,6-dicarboxylic acid hydrolase 99.68
d2f6ka1306 Putative amidohydrolase LP2961 {Lactobacillus plan 99.66
d2gwga1342 4-oxalomesaconate hydratase LigJ {Rhodopseudomonas 99.6
d2hbva1331 2-amino-3-carboxymuconate 6-semialdehyde decarboxy 99.6
d2dvta1325 Thermophilic reversible gamma-resorcylate decarbox 99.58
d1p1ma2281 Hypothetical protein TM0936, probable catalytic do 98.37
d1kcxa2334 Dihydropyrimidinase related protein-1 {Mouse (Mus 98.33
d2uz9a2313 Guanine deaminase {Human (Homo sapiens) [TaxId: 96 98.17
d1onwa2284 Isoaspartyl dipeptidase, catalytic domain {Escheri 98.12
d1ynya2332 D-hydantoinase {Bacillus sp. AR9 [TaxId: 301298]} 98.09
d2i9ua2310 Guanine deaminase {Clostridium acetobutylicum [Tax 98.0
d1gkpa2335 D-hydantoinase {Thermus sp. [TaxId: 275]} 97.92
d2ftwa2334 Dihydropyrimidine amidohydrolase Pyd2 {Dictyosteli 97.9
d1nfga2330 D-hydantoinase {Burkholderia pickettii [TaxId: 329 97.9
d2icsa2267 Putative adenine deaminase EF0837 {Enterococcus fa 97.86
d1gkra2325 L-hydantoinase {Arthrobacter aurescens [TaxId: 436 97.84
d2imra2308 Hypothetical protein DR0824 {Deinococcus radiodura 97.78
d1xrta2310 Two-domain dihydroorotase {Aquifex aeolicus [TaxId 97.77
d2fvka2384 Dihydropyrimidine amidohydrolase Pyd2 {Yeast (Sacc 97.72
d2paja2336 Hypothetical protein GOS_1943094 {Environmental sa 97.33
d1ra0a2320 Cytosine deaminase catalytic domain {Escherichia c 96.84
d2ooda2325 Guanine deaminase {Bradyrhizobium japonicum [TaxId 96.74
d2qeec1415 Uncharacterized protein BH0493 {Bacillus haloduran 96.27
d2r8ca2311 Uncharacterized protein EAJ56179 {Unidentified org 96.19
d2p9ba2324 Uncharacterized protein BL1453 {Bifidobacterium lo 95.83
d2amxa1357 Adenosine deaminase (ADA) {Plasmodium yoelii [TaxI 95.69
d2qs8a2310 Xaa-Pro dipeptidase {Alteromonas macleodii [TaxId: 95.52
d1m7ja3358 N-acyl-D-aminoacid amidohydrolase, catalytic domai 95.16
d1a4ma_349 Adenosine deaminase (ADA) {Mouse (Mus musculus) [T 94.88
d1j5sa_451 Uronate isomerase TM0064 {Thermotoga maritima [Tax 94.85
d2bb0a2300 Imidazolonepropionase {Bacillus subtilis [TaxId: 1 94.36
d2puza2301 Imidazolonepropionase {Agrobacterium tumefaciens [ 93.43
d1e9yb2389 alpha-subunit of urease, catalytic domain {Helicob 92.98
d3be7a2303 Zn-dependent arginine carboxypeptidase {Unidentifi 92.79
d2eg6a1343 Dihydroorotase {Escherichia coli [TaxId: 562]} 92.6
d1itua_369 Renal dipeptidase {Human (Homo sapiens) [TaxId: 96 92.34
d2q09a2301 Probable 4-imidazolone-5-propanoate amidohydrolase 91.74
d4ubpc2390 alpha-subunit of urease, catalytic domain {Bacillu 89.55
d1ejxc2385 alpha-subunit of urease, catalytic domain {Klebsie 88.7
d1m65a_244 Hypothetical protein YcdX {Escherichia coli [TaxId 84.42
d1i60a_278 Hypothetical protein IolI {Bacillus subtilis [TaxI 82.23
d1xxxa1296 Dihydrodipicolinate synthase {Mycobacterium tuberc 81.38
d2g0wa1275 Hypothetical protein Lmo2234 {Listeria monocytogen 80.56
>d1xwya1 c.1.9.12 (A:1-260) Deoxyribonuclease TatD (MttC) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: TatD Mg-dependent DNase-like
domain: Deoxyribonuclease TatD (MttC)
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.6e-64  Score=458.11  Aligned_cols=256  Identities=33%  Similarity=0.569  Sum_probs=227.5

Q ss_pred             EEeeccCCCCccccccccCCcCCCCCHHHHHHHHHHcCCCEEEEeCCCHHhHHHHHHHHHhcCCeEEeeecCCCCccccc
Q 020985            6 LIDIAVNFTDGMFKGIYHGKQCHASDIATVLSRAWSSGVDRIIVTGGSLEESKEALAIAETDGRLFCTVGVHPTRCKEFE   85 (319)
Q Consensus         6 iiD~H~Hl~~~~~~~~~~~~~~h~~~~~~vl~~~~~~Gv~~~v~~~~~~~~~~~~~~l~~~~~~i~~~~GiHP~~~~~~~   85 (319)
                      +||+||||+...|.          .|+++++++++++||.+++++|+++++|.++.+++++++++++++|+|||++.+..
T Consensus         1 liD~H~HL~~~~f~----------~d~~~vl~~a~~~gV~~ii~~~~~~~~~~~~~~la~~~~~v~~a~GiHP~~~~~~~   70 (260)
T d1xwya1           1 MFDIGVNLTSSQFA----------KDRDDVVACAFDAGVNGLLITGTNLRESQQAQKLARQYSSCWSTAGVHPHDSSQWQ   70 (260)
T ss_dssp             CEEEEECTTSGGGT----------TTHHHHHHHHHHTTCCEEEECCCSHHHHHHHHHHHHHSTTEEEEECCCGGGGGGCC
T ss_pred             CEEEEeCCCChHHh----------CCHHHHHHHHHHCCCCEEEEecCCHHHHHHHHHHHHhCCcccchhhcCcchhhhhh
Confidence            68999999998885          79999999999999999999999999999999999999999999999999988754


Q ss_pred             ccCCCHHHHHHHHHHHHhccCCCCEEEEEeecCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEEEEeccchHHHHHHHH
Q 020985           86 ESGDPEKHFQALLSLAKEGIEKGKVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATKLPMFLHMREAAADFCAIVE  165 (319)
Q Consensus        86 ~~~~~~~~l~~l~~~l~~~~~~~~~~aIGEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~~~Pv~iH~r~a~~~~l~il~  165 (319)
                      +     ...+.+.+++.    +++++|||||||||++ .....+.|+++|++||++|+++++||+||+|+|.++++++|+
T Consensus        71 ~-----~~~~~~~~~~~----~~~~vaIGEiGLD~~~-~~~~~~~q~~~f~~ql~lA~~~~lPviiH~r~a~~~~~~il~  140 (260)
T d1xwya1          71 A-----ATEEAIIELAA----QPEVVAIGECGLDFNR-NFSTPEEQERAFVAQLRIAADLNMPVFMHCRDAHERFMTLLE  140 (260)
T ss_dssp             H-----HHHHHHHHHHT----STTEEEEEEEEEETTT-CSSCHHHHHHHHHHHHHHHHHHTCCEEEEEESCHHHHHHHHG
T ss_pred             h-----hHHHHHHHHHh----cchhhhhhhhcccccc-cccchHHHHHHHHHHHHHHHhcCCceEeeeccchhHHHHHHH
Confidence            3     55666666664    5789999999999987 446788999999999999999999999999999999999999


Q ss_pred             hccCCCcceEEEeCCCCHHHHHHHHHCCCeEeecccccc---ChhhHHHHhcCCCCCEEEcCCCCCcccccccccccccc
Q 020985          166 RNKDRFTGGVTHSFTGSAEDRDKLLTFNMYIGINGCSLK---TAENLDVVRGIPIERMMIETDSPYCEIKNAHAGISFVK  242 (319)
Q Consensus       166 ~~~~~~~~~i~H~f~g~~~~~~~~l~~g~y~s~sg~~~~---~~~~~~~l~~ip~drlLlETD~P~~~~~~~~~~~~~~~  242 (319)
                      ++..+.+++++|||+|+.+++++++++|+|+||+|.++.   +.+.+++++.+|+||||+|||+||+.|.+         
T Consensus       141 ~~~~~~~~~v~H~f~g~~~~~~~~~~~g~~~s~~g~~~~~~~~~~~~~~~~~iPldrlllETD~P~~~p~~---------  211 (260)
T d1xwya1         141 PWLDKLPGAVLHCFTGTREEMQACVAHGIYIGITGWVCDERRGLELRELLPLIPAEKLLIETDAPYLLPRD---------  211 (260)
T ss_dssp             GGGGGSSCEEECSCCCCHHHHHHHHHTTCEEEECGGGGCTTTSHHHHHHGGGSCGGGEEECCCTTSCCCTT---------
T ss_pred             HhhccCcccchhhhhccHHHHHHhhhhccccccCccccchhhHHHHHHHHHhhhhhheeeecCCCCCCCcc---------
Confidence            886555678999999999999999999999999997542   44578999999999999999999976543         


Q ss_pred             ccCCCcccccccccccCCCCCccchHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhcCCC
Q 020985          243 STWPSKKKEKYDQDSLVKGRNEPCLVRQVLEVVAGCKGINDIDQLSRTLYHNTCRVFFPQ  302 (319)
Q Consensus       243 ~~l~~~~~~k~~~~~~~~~~n~P~~l~~v~~~iA~~~~is~~e~~~~~~~~N~~rlf~~~  302 (319)
                        +....+|         .+|+|++|.+|++.||+++|++ ++++++++++|+.|+|++.
T Consensus       212 --~~~~~~~---------~~NeP~~l~~v~~~lA~~~g~~-~~ev~~~~~~N~~~~f~l~  259 (260)
T d1xwya1         212 --LTPKPSS---------RRNEPAHLPHILQRIAHWRGED-AAWLAATTDANVKTLFGIA  259 (260)
T ss_dssp             --CTTCCCS---------SCCCGGGHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHHCCC
T ss_pred             --ccccccC---------CCCChHHHHHHHHHHHHHhCcC-HHHHHHHHHHHHHHHhCCC
Confidence              2222233         3899999999999999999999 9999999999999999984
>d1j6oa_ c.1.9.12 (A:) Hypothetical protein TM0667 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1yixa1 c.1.9.12 (A:1-265) Putative deoxyribonuclease YcfH {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1zzma1 c.1.9.12 (A:1-259) Putative deoxyribonuclease YjjV {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1bf6a_ c.1.9.3 (A:) Phosphotriesterase homology protein {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1i0da_ c.1.9.3 (A:) Phosphotriesterase (parathion hydrolase, PTE) {Pseudomonas diminuta [TaxId: 293]} Back     information, alignment and structure
>d2ffia1 c.1.9.15 (A:10-280) Putative 2-pyrone-4,6-dicarboxylic acid hydrolase PP1699 {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d2f6ka1 c.1.9.15 (A:2-307) Putative amidohydrolase LP2961 {Lactobacillus plantarum [TaxId: 1590]} Back     information, alignment and structure
>d2gwga1 c.1.9.15 (A:1-342) 4-oxalomesaconate hydratase LigJ {Rhodopseudomonas palustris [TaxId: 1076]} Back     information, alignment and structure
>d2hbva1 c.1.9.15 (A:3-333) 2-amino-3-carboxymuconate 6-semialdehyde decarboxylase NbaD {Pseudomonas fluorescens [TaxId: 294]} Back     information, alignment and structure
>d2dvta1 c.1.9.15 (A:1-325) Thermophilic reversible gamma-resorcylate decarboxylase {Rhizobium sp. MTP-10005 [TaxId: 267998]} Back     information, alignment and structure
>d1p1ma2 c.1.9.9 (A:50-330) Hypothetical protein TM0936, probable catalytic domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1kcxa2 c.1.9.6 (A:67-400) Dihydropyrimidinase related protein-1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2uz9a2 c.1.9.9 (A:76-388) Guanine deaminase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1onwa2 c.1.9.13 (A:63-346) Isoaspartyl dipeptidase, catalytic domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ynya2 c.1.9.6 (A:53-384) D-hydantoinase {Bacillus sp. AR9 [TaxId: 301298]} Back     information, alignment and structure
>d2i9ua2 c.1.9.9 (A:67-376) Guanine deaminase {Clostridium acetobutylicum [TaxId: 1488]} Back     information, alignment and structure
>d1gkpa2 c.1.9.6 (A:55-389) D-hydantoinase {Thermus sp. [TaxId: 275]} Back     information, alignment and structure
>d2ftwa2 c.1.9.6 (A:60-393) Dihydropyrimidine amidohydrolase Pyd2 {Dictyostelium discoideum [TaxId: 44689]} Back     information, alignment and structure
>d1nfga2 c.1.9.6 (A:52-381) D-hydantoinase {Burkholderia pickettii [TaxId: 329]} Back     information, alignment and structure
>d2icsa2 c.1.9.14 (A:55-321) Putative adenine deaminase EF0837 {Enterococcus faecalis [TaxId: 1351]} Back     information, alignment and structure
>d1gkra2 c.1.9.6 (A:55-379) L-hydantoinase {Arthrobacter aurescens [TaxId: 43663]} Back     information, alignment and structure
>d2imra2 c.1.9.16 (A:91-398) Hypothetical protein DR0824 {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d1xrta2 c.1.9.6 (A:56-365) Two-domain dihydroorotase {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d2fvka2 c.1.9.6 (A:57-440) Dihydropyrimidine amidohydrolase Pyd2 {Yeast (Saccharomyces kluyveri) [TaxId: 4934]} Back     information, alignment and structure
>d2paja2 c.1.9.9 (A:70-405) Hypothetical protein GOS_1943094 {Environmental samples} Back     information, alignment and structure
>d1ra0a2 c.1.9.5 (A:56-375) Cytosine deaminase catalytic domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2ooda2 c.1.9.9 (A:73-397) Guanine deaminase {Bradyrhizobium japonicum [TaxId: 375]} Back     information, alignment and structure
>d2qeec1 c.1.9.8 (C:2-416) Uncharacterized protein BH0493 {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d2r8ca2 c.1.9.18 (A:58-368) Uncharacterized protein EAJ56179 {Unidentified organism [TaxId: 32644]} Back     information, alignment and structure
>d2p9ba2 c.1.9.17 (A:71-394) Uncharacterized protein BL1453 {Bifidobacterium longum [TaxId: 216816]} Back     information, alignment and structure
>d2amxa1 c.1.9.1 (A:20-376) Adenosine deaminase (ADA) {Plasmodium yoelii [TaxId: 5861]} Back     information, alignment and structure
>d2qs8a2 c.1.9.18 (A:64-373) Xaa-Pro dipeptidase {Alteromonas macleodii [TaxId: 28108]} Back     information, alignment and structure
>d1m7ja3 c.1.9.11 (A:62-419) N-acyl-D-aminoacid amidohydrolase, catalytic domain {Alcaligenes faecalis [TaxId: 511]} Back     information, alignment and structure
>d1a4ma_ c.1.9.1 (A:) Adenosine deaminase (ADA) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1j5sa_ c.1.9.8 (A:) Uronate isomerase TM0064 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2bb0a2 c.1.9.17 (A:74-373) Imidazolonepropionase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2puza2 c.1.9.17 (A:80-380) Imidazolonepropionase {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
>d1e9yb2 c.1.9.2 (B:132-431,B:481-569) alpha-subunit of urease, catalytic domain {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d3be7a2 c.1.9.18 (A:57-359) Zn-dependent arginine carboxypeptidase {Unidentified organism [TaxId: 32644]} Back     information, alignment and structure
>d2eg6a1 c.1.9.4 (A:4-346) Dihydroorotase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1itua_ c.1.9.7 (A:) Renal dipeptidase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2q09a2 c.1.9.17 (A:66-366) Probable 4-imidazolone-5-propanoate amidohydrolase GOS_1928421 {Environmental samples} Back     information, alignment and structure
>d4ubpc2 c.1.9.2 (C:132-434,C:484-570) alpha-subunit of urease, catalytic domain {Bacillus pasteurii [TaxId: 1474]} Back     information, alignment and structure
>d1ejxc2 c.1.9.2 (C:1130-1422,C:1476-1567) alpha-subunit of urease, catalytic domain {Klebsiella aerogenes [TaxId: 28451]} Back     information, alignment and structure
>d1m65a_ c.6.3.1 (A:) Hypothetical protein YcdX {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1i60a_ c.1.15.4 (A:) Hypothetical protein IolI {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1xxxa1 c.1.10.1 (A:5-300) Dihydrodipicolinate synthase {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2g0wa1 c.1.15.4 (A:10-284) Hypothetical protein Lmo2234 {Listeria monocytogenes [TaxId: 1639]} Back     information, alignment and structure