Citrus Sinensis ID: 020994

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------32
Protein Sequence
MRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQYAGSLPTWSLQRAPYLSSRLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGPLSPTSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGYPINYGLSLPPLSILDSSLMNHQAISATHSIETSPDASSKIPNWVQNSDAVSVQHQNPDMKNSTTKNSDDSSKVDHPPHSVPNCSEPPHDQSN
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccEEEEccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccHHEEEccEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mrqdekscpyymrtgsckfgvackfhhpqpsslgtalpltgnaslgsmgssvlpssglqyagslptwslqrapylssrlqgtqsymplivspsqgivpapgwntymgnigplsptsiagsnliyssrnqgdlgaGAQMHILSassqnlperpdqpdcryymntgtckygadckfhhpkeriaqsaasnigplglpsrpgqaicsnysmygickfgptcrfdhpyagypinyglslpplsildsslmnhqaisathsietspdasskipnwvqnsdavsvqhqnpdmknsttknsddsskvdhpphsvpncsepphdqsn
Flexible Loop (DISEMBL)
mrqdekscpyyMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQYAGSLPTWSLQRAPYLSSRLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGPLSPTSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGYPINYGLSLPPLSILDSSLMNHQAISATHSIETSPDASSKIPNWVQNSDAVSVQHQNPDMKNSTTKNSDDSSKVDHpphsvpncsepphdqsn
Low Complexity Region (SEG)
MRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQYAGSLPTWSLQRAPYLSSRLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGPLSPTSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGYPINYGlslpplsildsslMNHQAISATHSIETSPDASSKIPNWVQNSDAVSVQHQNPDMKNSTTKNSDDSSKVDHPPHSVPNCSEPPHDQSN
Disordered region (IsUnstruct)
*******CPYYMRTGSCKFGVACKFHH*******************************QYAGSLPTWSLQRAPYLSSRLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGPLSPTSIAGSNLIY********************************CRYYMNTGTCKYGADCKFHHPKE*I**********L*****PGQAICSNYSMYGICKFGPTCRFDHPYAGYPINYGLSLPPLSILDSSL**************************************************************************
Disordered Region (DISOPRED)
****EKSCPYYMRTGSCKFGVACKFHHPQPS********************************************************************************************************************************YMNTGTCKYGADCK***********************RPGQAICSNYSMYGICKFGPTCRFD**************************************************************************************************
Disordered Region (DISEMBL)
MRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQYAGSLPTWSLQRAPYLSSRLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGPLSPTSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGYPINYGLSLPPLSILDSSLMNHQAISAT***********KIPNWVQNSDA*******************************************
Disordered Region (DISPRO)
****EKSCPYYMRTGSCKFGVACKFHHPQ**********************************LPTWSLQRAPYLSSRLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNI*************************************NLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAG*********************************************************************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQYAGSLPTWSLQRAPYLSSRLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGPLSPTSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGYPINYGLSLPPLSILDSSLMNHQAISATHSIETSPDASSKIPNWVQNSDAVSVQHQNPDMKNSTTKNSDDSSKVDHPPHSVPNCSEPPHDQSN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	319	2.2.26 [Sep-21-2011]
Q94AD9	404	Zinc finger CCCH domain-c	yes	no	0.802	0.633	0.427	4e-54
Q2R4J4	444	Zinc finger CCCH domain-c	yes	no	0.840	0.603	0.429	5e-51
Q9SWF9	417	Zinc finger CCCH domain-c	N/A	no	0.699	0.534	0.428	2e-47
Q2QT65	454	Zinc finger CCCH domain-c	no	no	0.736	0.517	0.413	2e-47
O48772	453	Zinc finger CCCH domain-c	no	no	0.871	0.613	0.382	7e-47
Q5JLB5	439	Zinc finger CCCH domain-c	no	no	0.680	0.494	0.399	2e-45
Q9STM4	448	Zinc finger CCCH domain-c	no	no	0.655	0.466	0.385	1e-39
Q8GXX7	397	Zinc finger CCCH domain-c	no	no	0.752	0.604	0.343	2e-39
Q84W91	468	Zinc finger CCCH domain-c	no	no	0.677	0.461	0.380	9e-39
Q5RJC5	435	Zinc finger CCCH domain-c	no	no	0.636	0.466	0.383	2e-38

>sp|Q94AD9|C3H3_ARATH Zinc finger CCCH domain-containing protein 3 OS=Arabidopsis thaliana GN=At1g04990 PE=2 SV=1

 Score =  211 bits (538), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 130/304 (42%), Positives = 166/304 (54%), Gaps = 48/304 (15%)

Query: 1   MRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQY 60
           MR  EK CPYY+RTG+C+FGVACKFHHPQP           N    + G S  P++ L+Y
Sbjct: 134 MRLGEKPCPYYLRTGTCRFGVACKFHHPQPD----------NGHSTAYGMSSFPAADLRY 183

Query: 61  AGSLPTWSLQRAPYLSSRLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGPLSPTSIAGS 120
           A  L   S         R Q  QSY+P++VSPSQG +P  GW  YM           A S
Sbjct: 184 ASGLTMMSTYGT---LPRPQVPQSYVPILVSPSQGFLPPQGWAPYM-----------AAS 229

Query: 121 NLIYSSRNQGDL-GAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKE 179
           N +Y+ +NQ    G+ A M +  A ++ L E  DQP+CR++MNTGTCKYG DCK+ HP  
Sbjct: 230 NSMYNVKNQPYYSGSSASMAMAVALNRGLSESSDQPECRFFMNTGTCKYGDDCKYSHPGV 289

Query: 180 RIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGYP-INYGLSLPPL 238
           RI+Q   S I P  LP+RPGQ  C N+  YG CKFGP C+FDHP   YP +    SLP  
Sbjct: 290 RISQPPPSLINPFVLPARPGQPACGNFRSYGFCKFGPNCKFDHPMLPYPGLTMATSLP-- 347

Query: 239 SILDSSLMNHQAISATHSIETSPDASSKIPNWVQNSDAVSVQHQNPDMKNSTTKNSDDSS 298
           +   S +  HQ IS T             PN    SD+ S+ +  PD+K    K S ++ 
Sbjct: 348 TPFASPVTTHQRISPT-------------PN---RSDSKSLSNGKPDVK----KESSETE 387

Query: 299 KVDH 302
           K D+
Sbjct: 388 KPDN 391

Possesses RNA-binding and ribonuclease activities in vitro.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: -EC: .EC: -

>sp|Q2R4J4|C3H63_ORYSJ Zinc finger CCCH domain-containing protein 63 OS=Oryza sativa subsp. japonica GN=Os11g0472000 PE=2 SV=2

 Score =  201 bits (512), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 128/298 (42%), Positives = 165/298 (55%), Gaps = 30/298 (10%)

Query: 1   MRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQY 60
           +R +EK C YY+RTG CKFG  CKFHHPQPS+   A+      S+ S G SV   S   Y
Sbjct: 146 LRPNEKECAYYLRTGQCKFGSTCKFHHPQPSNTMVAV----RGSVYSPGQSVTSPSQHTY 201

Query: 61  AGSLPTWSLQR-APYLSS-RLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGPLSP---- 114
            G++  W L R A +++S R  G  SY  +IV P  G+V  PGWN Y   IG  S     
Sbjct: 202 PGAVTNWPLSRSASFIASPRWPGHSSYAQVIVPP--GLVQVPGWNPYAAQIGSSSSDDQQ 259

Query: 115 TSIAGSNLIYSSR-----NQGDLG------AGAQ-MHILSASSQNL-PERPDQPDCRYYM 161
            +  G+     SR     N GD G      AG+  + + +   +++ PERPDQP+C++YM
Sbjct: 260 RTAGGAQYYTGSRHSETPNMGDQGMFSSYQAGSVPLGLYTVQRESIFPERPDQPECQFYM 319

Query: 162 NTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFD 221
            TG CK+GA CKFHHPKERI  +    +  LGLP RPG+ IC+ YS YGICKFGP C+FD
Sbjct: 320 KTGDCKFGAVCKFHHPKERIIPTPNCALSSLGLPLRPGEPICTFYSRYGICKFGPNCKFD 379

Query: 222 HPYAGYPINYGLSLPPLSILDSSLMNHQAISATHSIETSPDASSKIPNWVQNSDAVSV 279
           HP     + YGL+  P    D S     A    HS E SPD  S     + +SD+  +
Sbjct: 380 HPMGT--VMYGLATSPTG--DVSARRMLAPVPAHS-EVSPDNVSGRSRRITHSDSQQI 432

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9SWF9|ZFNL_PEA Zinc finger CCCH domain-containing protein ZFN-like OS=Pisum sativum PE=2 SV=1

 Score =  189 bits (481), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 105/245 (42%), Positives = 143/245 (58%), Gaps = 22/245 (8%)

Query: 1   MRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQY 60
           +R +E    YY+RTG CKFG  CKFHHPQPS++   L + G+    ++ S   P     Y
Sbjct: 120 LRPNESERAYYLRTGQCKFGNTCKFHHPQPSNM--VLSMRGSTVYPTVQSPTTPGQ-QSY 176

Query: 61  AGSLPTWSLQRAPYLSS-RLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGPLSPTSIAG 119
           A  +  WS   + Y+ S R QG  SY PLI+   QG+V  PGW+TY G +G  SP     
Sbjct: 177 AAGITNWS--SSSYVPSPRWQGPSSYAPLILP--QGVVSVPGWSTYGGQMGSESPQQTMR 232

Query: 120 SNLIYSSRNQGDL-GAGAQ------------MHILSASSQNL-PERPDQPDCRYYMNTGT 165
           ++  Y + +QG+L  AG Q            +   +    N+ PERPDQP+C++YM TG 
Sbjct: 233 NDQTYGTSHQGELENAGLQGAYSQYRSGSVPVGFYALQRDNIFPERPDQPECQFYMKTGD 292

Query: 166 CKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYA 225
           CK+GA C+FHHP+ER   +    + P+GLP RPG+ +C  YS YGICKFGP+C+FDHP  
Sbjct: 293 CKFGAVCRFHHPRERQIPAPDCVLSPIGLPLRPGEPLCVFYSRYGICKFGPSCKFDHPMG 352

Query: 226 GYPIN 230
            +  N
Sbjct: 353 IFTYN 357

Pisum sativum (taxid: 3888)

>sp|Q2QT65|C3H66_ORYSJ Zinc finger CCCH domain-containing protein 66 OS=Oryza sativa subsp. japonica GN=Os12g0405100 PE=2 SV=1

 Score =  189 bits (480), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 112/271 (41%), Positives = 148/271 (54%), Gaps = 36/271 (13%)

Query: 1   MRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQY 60
           MR +EK C YY+RTG CKF   CKFHHPQPS+   A+      S+ S G S        Y
Sbjct: 156 MRPNEKECAYYLRTGQCKFASTCKFHHPQPSNTMVAV----RNSMYSPGQSATSPGQHTY 211

Query: 61  AGSLPTWSLQR-APYLSS-RLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGPLSP---- 114
            G++  W+L R A +++S R  G   Y  +IV   QG+V  PGWN Y   +G  SP    
Sbjct: 212 PGAVTNWTLSRSASFIASPRWPGHSGYAQVIVP--QGLVQVPGWNPYAAQMGSSSPDDQQ 269

Query: 115 ---------------TSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNL-PERPDQPDCR 158
                          T   G + +Y S   G +  G    + +   +N+ PERPDQP+C+
Sbjct: 270 RTPVTTQYYGSRQSETGGMGDHGMYQSYQGGSVPVG----VYTVQGENIFPERPDQPECQ 325

Query: 159 YYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTC 218
           +YM TG CK+GA CKFHHPKER+  +    +  LGLP RPG+ +C+ YS YGICKFGP C
Sbjct: 326 FYMKTGDCKFGAVCKFHHPKERLVPAPNCALNSLGLPLRPGEPVCTFYSRYGICKFGPNC 385

Query: 219 RFDHPYAGYPINYGLSLPPLSILDSSLMNHQ 249
           +FDHP     + YG +  P    D S M++Q
Sbjct: 386 KFDHPMG--TLMYGSATSPRG--DVSSMHYQ 412

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O48772|C3H26_ARATH Zinc finger CCCH domain-containing protein 26 OS=Arabidopsis thaliana GN=ZFN2 PE=2 SV=1

 Score =  187 bits (476), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 129/337 (38%), Positives = 175/337 (51%), Gaps = 59/337 (17%)

Query: 1   MRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQY 60
           MRQ EK CPYYM+TG C+FGVACKFHHP P S     P  G+++      S  PS G  Y
Sbjct: 128 MRQGEKPCPYYMQTGLCRFGVACKFHHPHPHSQ----PSNGHSAYAM---SSFPSVGFPY 180

Query: 61  AGSLPTWSLQRAPYLS---SRLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGPLSPTSI 117
           A  +   SL  A Y +    ++  +Q+YMP +V+PSQG++P  GW TYM           
Sbjct: 181 ASGMTMVSLPPATYGAIPRPQVPQSQAYMPYMVAPSQGLLPPQGWATYM----------- 229

Query: 118 AGSNLIYSSRNQGDLGAGAQMHILSASSQN-LPERPDQPDCRYYMNTGTCKYGADCKFHH 176
             SN IY+ + Q D  + A + +   S  +   ER +   CR++MNTGTCKYG DCK+ H
Sbjct: 230 TASNPIYNMKTQLDSSSSASVAVTVTSHHHSFSERAE---CRFFMNTGTCKYGDDCKYSH 286

Query: 177 PKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDH-------------- 222
           PKER+ QS  + + P+ LP+RPGQ  C N+  YG CKFG  C+FDH              
Sbjct: 287 PKERLLQSPPTLLNPIVLPARPGQPACGNFKAYGFCKFGANCKFDHSMLLNPYNNTGLAM 346

Query: 223 -----PYAGYP---INYGLSLPPLSILDSSLMNHQ-AISATHSIETSP-DASSKIPNWVQ 272
                PY   P    N  +S PP     ++L N + A +   S+ET   D S   P   +
Sbjct: 347 SSLPTPYPYAPPVSTNLRISSPPSPSDMTTLSNGKPAAAEAQSLETEKQDDSPTEPEKSE 406

Query: 273 --------NSDAVSVQHQNPDMKNSTTKNSDDSSKVD 301
                    SD+ S+ +  PD +  T K  DDS+++D
Sbjct: 407 VEDSLPPNGSDSTSLPNDKPDAE--TEKQDDDSAELD 441

Arabidopsis thaliana (taxid: 3702)

>sp|Q5JLB5|C3H12_ORYSJ Zinc finger CCCH domain-containing protein 12 OS=Oryza sativa subsp. japonica GN=Os01g0917400 PE=2 SV=2

 Score =  182 bits (463), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 101/253 (39%), Positives = 136/253 (53%), Gaps = 36/253 (14%)

Query: 1   MRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSVLPS----- 55
           +R  EK C YY++TG CK+G  CKFHHP+            NA   S GS + PS     
Sbjct: 170 LRPSEKECAYYLKTGQCKYGNTCKFHHPE----------LFNAMASSRGSPIYPSVHSSA 219

Query: 56  -SGLQYAGSLPTWSLQRAPYLSS-RLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGPLS 113
            +G  Y G++ +W+  R  ++ S R Q   +Y P+IV   QG+V  P WN+Y G + P+S
Sbjct: 220 TAGPPYTGTMASWAFPRGSFIPSPRWQNPSNYAPMIVP--QGLVQVPSWNSYTGQMMPVS 277

Query: 114 PTSIA----GSNLIYSSRNQGDLGAGAQMHILSASSQN-------------LPERPDQPD 156
            +       G+   Y +  Q D  AG Q  +    S +              PERPDQP+
Sbjct: 278 SSESRLQSPGAQQTYGTSQQVDASAGNQGMLSPYRSSSYPVPQYALQRENVFPERPDQPE 337

Query: 157 CRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGP 216
           C+YYM TG CK+GA CKFHHP+ R   +    + P+GLP RPG+ +C  YS YGICKFG 
Sbjct: 338 CQYYMKTGDCKFGAVCKFHHPRVRSMPTPDCVLSPVGLPLRPGEELCKFYSRYGICKFGA 397

Query: 217 TCRFDHPYAGYPI 229
            C+FDHP    P+
Sbjct: 398 NCKFDHPTMAPPM 410

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9STM4|C3H43_ARATH Zinc finger CCCH domain-containing protein 43 OS=Arabidopsis thaliana GN=At3g48440 PE=1 SV=1

 Score =  163 bits (413), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 88/228 (38%), Positives = 126/228 (55%), Gaps = 19/228 (8%)

Query: 1   MRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQY 60
           +R  E  CPYYMR GSCK+G  CKF+HP P+++G     +   + G    +  P +  Q 
Sbjct: 203 LRPGEVECPYYMRNGSCKYGAECKFNHPDPTTIGGTDSPSFRGNNGVSIGTFSPKATFQ- 261

Query: 61  AGSLPTWSLQRAPYLSSRLQGTQSYMPLIVSPSQGIVPA-PGWNTYMGNI-----GPLSP 114
             S  +WS  R       + GT  ++P+++S + G+    P WN Y  ++     G  SP
Sbjct: 262 -ASSTSWSSPR------HVNGTSPFIPVMLSQTHGVTSQNPEWNGYQASVYSSERGVFSP 314

Query: 115 TSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKF 174
           ++   + L+ +S  +  +      H + A  +  PERPDQP+C YYM TG CK+  +CK+
Sbjct: 315 ST---TYLMNNSSAETSMLLSQYRHQMPA--EEFPERPDQPECSYYMKTGDCKFKFNCKY 369

Query: 175 HHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDH 222
           HHPK R+ +     +   GLP RP Q IC+ YS YGICKFGP CRFDH
Sbjct: 370 HHPKNRLPKLPPYALNDKGLPLRPDQNICTYYSRYGICKFGPACRFDH 417

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GXX7|C3H33_ARATH Zinc finger CCCH domain-containing protein 33 OS=Arabidopsis thaliana GN=ZFN1 PE=1 SV=1

 Score =  162 bits (411), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 98/285 (34%), Positives = 143/285 (50%), Gaps = 45/285 (15%)

Query: 1   MRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQY 60
           +R +E  C Y++RTG CKFG  CKF+HPQP      +P +G  S                
Sbjct: 130 LRSNEVDCAYFLRTGHCKFGGTCKFNHPQPQPTNMMVPTSGQQSY--------------- 174

Query: 61  AGSLPTWSLQRAPYLSS-RLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGPLSPTSIAG 119
                 WS  RA +++S R Q   SY  LI+   QG+VP  GWN Y G +G +SP+   G
Sbjct: 175 -----PWS--RASFIASPRWQDPSSYASLIMP--QGVVPVQGWNPYSGQLGSVSPSG-TG 224

Query: 120 SNLIYSSRNQGDLGAGAQMHILSASSQN------------------LPERPDQPDCRYYM 161
           ++  Y +  Q +          S S  N                   PERP QP+C++YM
Sbjct: 225 NDQNYRNLQQNETIESGSQSQGSFSGYNPGSSVPLGGYYALPRENVFPERPGQPECQFYM 284

Query: 162 NTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFD 221
            TG CK+G  CKFHHP++R A      +  +GLP RPG+ +C  Y+ YGICKFGP+C+FD
Sbjct: 285 KTGDCKFGTVCKFHHPRDRQAPPPDCLLSSIGLPLRPGEPLCVFYTRYGICKFGPSCKFD 344

Query: 222 HPYAGYPINYGLSLPPLSILDSSLMNHQAISATHSIETSPDASSK 266
           HP   +  +   S     ++++S    + +S + + + +  +S K
Sbjct: 345 HPMRVFTYDNTASETD-EVVETSTGKSRRLSVSETRQAATTSSGK 388

Arabidopsis thaliana (taxid: 3702)

>sp|Q84W91|C3H32_ARATH Zinc finger CCCH domain-containing protein 32 OS=Arabidopsis thaliana GN=At2g47850 PE=2 SV=2

 Score =  160 bits (406), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 89/234 (38%), Positives = 127/234 (54%), Gaps = 18/234 (7%)

Query: 1   MRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQY 60
           +R+ +  C YY++TG CKFG+ CKFHHPQP+      P            S++P    QY
Sbjct: 135 VREGDNECSYYLKTGQCKFGITCKFHHPQPAGTTVPPPPASAPQFYPSVQSLMPD---QY 191

Query: 61  AGSLPTWSLQRAPYLSSRLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGP-LSP----- 114
            G   +  + R     S +QG  +Y P++++P  G+VP PGW+ Y   + P LSP     
Sbjct: 192 GGPSSSLRVARTLLPGSYMQG--AYGPMLLTP--GVVPIPGWSPYSAPVSPALSPGAQHA 247

Query: 115 ---TSIAGSNLIYSSRNQ--GDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYG 169
              TS+ G   + S+     G   + +    +    Q  PERP +P+C+YY+ TG CK+G
Sbjct: 248 VGATSLYGVTQLTSTTPSLPGVYPSLSSPTGVIQKEQAFPERPGEPECQYYLKTGDCKFG 307

Query: 170 ADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHP 223
             CKFHHP++R+   A   + P+GLP RPG   C+ Y   G CKFG TC+FDHP
Sbjct: 308 TSCKFHHPRDRVPPRANCVLSPIGLPLRPGVQRCTFYVQNGFCKFGSTCKFDHP 361

Arabidopsis thaliana (taxid: 3702)

>sp|Q5RJC5|C3H67_ARATH Zinc finger CCCH domain-containing protein 67 OS=Arabidopsis thaliana GN=At5g63260 PE=2 SV=2

 Score =  160 bits (404), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 89/232 (38%), Positives = 128/232 (55%), Gaps = 29/232 (12%)

Query: 1   MRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLG-TALPLTGNASLGSMGSSVLPSSGLQ 59
           +R  EK CP+YMR GSCKFG  CKF+HP P+++G    PL      G+ G S  P +   
Sbjct: 193 IRPGEKECPFYMRNGSCKFGSDCKFNHPDPTAIGGVDSPLY----RGNNGGSFSPKA--- 245

Query: 60  YAGSLPTWSLQRAPYLSSRLQGTQS--YMPLIVSPSQGIVP-APGWNTYMGNIG------ 110
                P+ +   +   +  + GT +  ++P +   S+G+ P A  WN Y  +        
Sbjct: 246 -----PSQASSTSWSSTRHMNGTGTAPFIPSMFPHSRGVTPQASDWNGYQASSAYPPERS 300

Query: 111 PLSPTSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGA 170
           PL+P+S   +N +  +       +    +    S +  PERPDQP+C YY+ TG CK+  
Sbjct: 301 PLAPSSYQVNNSLAET-------SSFSQYQHQMSVEEFPERPDQPECTYYLKTGDCKFKY 353

Query: 171 DCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDH 222
            CK+HHPK R+ + AA +    GLP RP Q++C++YS YGICKFGP CRFDH
Sbjct: 354 KCKYHHPKNRLPKQAAFSFNDKGLPLRPDQSMCTHYSRYGICKFGPACRFDH 405

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	319
255576147	456	zinc finger protein, putative [Ricinus c	0.981	0.686	0.659	1e-114
225447159	450	PREDICTED: zinc finger CCCH domain-conta	0.987	0.7	0.633	1e-109
224129058	446	predicted protein [Populus trichocarpa]	0.965	0.690	0.628	1e-109
224068913	450	predicted protein [Populus trichocarpa]	0.974	0.691	0.619	1e-106
147819907	460	hypothetical protein VITISV_020358 [Viti	0.987	0.684	0.577	1e-104
359488091	324	PREDICTED: LOW QUALITY PROTEIN: zinc fin	0.771	0.759	0.620	2e-88
356554539	417	PREDICTED: zinc finger CCCH domain-conta	0.899	0.688	0.520	3e-78
449450892	430	PREDICTED: zinc finger CCCH domain-conta	0.931	0.690	0.507	4e-78
356501261	415	PREDICTED: zinc finger CCCH domain-conta	0.890	0.684	0.518	2e-77
357493165	422	Zinc finger CCCH domain-containing prote	0.811	0.613	0.550	5e-75

>gi|255576147|ref|XP_002528968.1| zinc finger protein, putative [Ricinus communis] gi|223531614|gb|EEF33442.1| zinc finger protein, putative [Ricinus communis]

 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 211/320 (65%), Positives = 249/320 (77%), Gaps = 7/320 (2%)

Query: 1   MRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQY 60
           MRQDEKSCPYYMRTGSCKFGVACKFHHPQP+ LGT LP TG A+ G M SS LPSSGL Y
Sbjct: 140 MRQDEKSCPYYMRTGSCKFGVACKFHHPQPAPLGTGLPFTGPAASGPMASSNLPSSGLPY 199

Query: 61  AGSLPTWSLQRAPYLSS-RLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGPLSPTSIAG 119
            G LPTWSL RAPY+S  RLQG Q+YMP ++SPSQG+V A GWNTY+GN+ P+S  S+ G
Sbjct: 200 VGGLPTWSLPRAPYVSGPRLQGPQTYMPAVLSPSQGVVAAQGWNTYVGNLSPMSSGSVLG 259

Query: 120 SNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKE 179
           S+++Y+SRNQ + G+  Q+H+LS +S NLPERPDQP+CRY+MNTGTCKYG+DCK+HHPKE
Sbjct: 260 SSIVYNSRNQSESGSSGQVHMLSTTSSNLPERPDQPECRYFMNTGTCKYGSDCKYHHPKE 319

Query: 180 RIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGYPINYGLSLPPLS 239
           RIAQ A ++IGP+GLPSRPGQ ICSNYSMYG+CKFGPTCRFDHP+ GYP  Y LSL PLS
Sbjct: 320 RIAQLATNSIGPVGLPSRPGQPICSNYSMYGLCKFGPTCRFDHPFTGYPYGYSLSLQPLS 379

Query: 240 ILDSSLMNHQAIS-ATHSIETSPDASSKIPNWVQNSDAVSVQHQNPDMKNSTTKNSDDSS 298
           I+DSSL+++  +S    S E+    SSK P+WVQN D  S +HQN D     TK SDD  
Sbjct: 380 IIDSSLLSYPRMSPPALSSESPISLSSKFPDWVQNPDGASSKHQNSDR---NTKISDDQP 436

Query: 299 KV--DHPPHSVPNCSEPPHD 316
           +     PPHS    SEP HD
Sbjct: 437 EQAGSPPPHSSQASSEPSHD 456

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225447159|ref|XP_002275775.1| PREDICTED: zinc finger CCCH domain-containing protein 12 [Vitis vinifera] gi|297739220|emb|CBI28871.3| unnamed protein product [Vitis vinifera]

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 204/322 (63%), Positives = 249/322 (77%), Gaps = 7/322 (2%)

Query: 1   MRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQY 60
           MRQ+EK C YYMRTG CKFG ACKFHHPQP+S GT LP TG A+ GS GSS+LPSSGL Y
Sbjct: 133 MRQEEKPCSYYMRTGLCKFGAACKFHHPQPASAGTVLPATGPAAFGSTGSSILPSSGLPY 192

Query: 61  AGSLPTWSLQRAPYLSS-RLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGPLSPTSIAG 119
            G LP WSL RAPY+   R+QG Q+YMP+++SPSQGIVPA GWNTYMGN+ P+S T I G
Sbjct: 193 VGGLPAWSLPRAPYIPGPRMQGPQTYMPIVLSPSQGIVPAQGWNTYMGNMSPISSTGILG 252

Query: 120 SNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKE 179
           SNL+Y+SRNQ + G+  Q+H+LS+   +LPERPDQP+CRY+M+TG+CKYG+DCK+HHPKE
Sbjct: 253 SNLVYNSRNQSESGSSGQVHLLSSLIPHLPERPDQPECRYFMSTGSCKYGSDCKYHHPKE 312

Query: 180 RIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGY-PINYGLSLPPL 238
           RIAQ A + +GPLGLP RPGQA+CS+Y++YG+CK+GPTC+FDHP  GY   NY LSLPPL
Sbjct: 313 RIAQLATNTLGPLGLPLRPGQAVCSHYNLYGLCKYGPTCKFDHPLTGYSSYNYCLSLPPL 372

Query: 239 SILDSSLMNHQAISAT-HSIETSPDASSKIPNWVQNSDAVSVQHQNPDMKNSTTKNSDDS 297
           SILD SL+ +Q  S+T HS ETSP  SSK P+WVQ +++ S + QNPD K          
Sbjct: 373 SILDPSLLPYQRNSSTVHSSETSPSKSSKFPDWVQKTESGSTKSQNPDTKAPEGPPEQAG 432

Query: 298 SKVDHPPHSVPNCSEPPHDQSN 319
           S +    HS PN SEPP DQS+
Sbjct: 433 SLL----HSSPNSSEPPQDQSD 450

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224129058|ref|XP_002320490.1| predicted protein [Populus trichocarpa] gi|222861263|gb|EEE98805.1| predicted protein [Populus trichocarpa]

 Score =  400 bits (1027), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 201/320 (62%), Positives = 245/320 (76%), Gaps = 12/320 (3%)

Query: 1   MRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQY 60
           MRQDEKSCPYYMRT SCKFGVACKFHHPQP+SLGT+  LTG A+ GS GS ++PSSGL Y
Sbjct: 135 MRQDEKSCPYYMRTRSCKFGVACKFHHPQPASLGTSFSLTGAAAFGSTGSPIVPSSGLPY 194

Query: 61  AGSLPTWSLQRAPYLS-SRLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGPLSPTSIAG 119
            G LPTWSL RAP +S + LQG Q+YMP++VSPS GI+P PGWNTY+GN+ P+S +SI G
Sbjct: 195 VGGLPTWSLPRAPLMSGTNLQGPQAYMPVVVSPSPGIIPVPGWNTYVGNLNPMSSSSILG 254

Query: 120 SNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKE 179
           SN  Y SRNQGD G+G Q+H+LS  S  LPERP QP+CR++M+TGTCKYG+DCK+HHPKE
Sbjct: 255 SNRAYDSRNQGDSGSGGQVHLLSTVSPILPERPGQPECRHFMSTGTCKYGSDCKYHHPKE 314

Query: 180 RIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGYPINYGLSLPPLS 239
           RIAQ A + +G LGLPSRPGQA+C +YSMYGICKFGPTCR+DHP   YP NY LSLP LS
Sbjct: 315 RIAQLATNTMGLLGLPSRPGQAVCPDYSMYGICKFGPTCRYDHPIHTYPYNYSLSLPSLS 374

Query: 240 ILDSSLMNHQAISATHSIETSPDASSKIPNWVQNSDAVSV-QHQNPDMKNSTTKNSDDSS 298
           I+DSSL+ +  ++     + +P   SK+P+ + N D  S  +HQNPD   ++TK SDD +
Sbjct: 375 IMDSSLITYPRMA-----QAAPVTLSKLPDLIHNPDGASYNKHQNPD---TSTKISDDPT 426

Query: 299 KV--DHPPHSVPNCSEPPHD 316
           +     PPHS    SEP HD
Sbjct: 427 EQAGSPPPHSSQASSEPSHD 446

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224068913|ref|XP_002302855.1| predicted protein [Populus trichocarpa] gi|222844581|gb|EEE82128.1| predicted protein [Populus trichocarpa]

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 199/321 (61%), Positives = 243/321 (75%), Gaps = 10/321 (3%)

Query: 1   MRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQY 60
           MRQDEKSCPYYMRT SCKFGVACKFHHPQP+SLGT+LPLTG A+ GS GS ++PSSGL Y
Sbjct: 135 MRQDEKSCPYYMRTRSCKFGVACKFHHPQPASLGTSLPLTGAAAFGSTGSPIVPSSGLPY 194

Query: 61  AGSLPTWSLQRAP-YLS-SRLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGPLSPTSIA 118
            G LPTWSL RAP Y+S + LQG Q+YMP++VSPSQGIVP PGWNTY+GN  P+S +SI 
Sbjct: 195 VGGLPTWSLPRAPPYMSGTHLQGPQAYMPVVVSPSQGIVPVPGWNTYVGNSNPMSSSSIL 254

Query: 119 GSNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPK 178
           GSN  Y SRN GD  +G+  H+LS +   LPERPDQP+CR++M++GTCKYG+DCK+HHPK
Sbjct: 255 GSNRAYDSRNHGD--SGSSGHLLSTAIPALPERPDQPECRHFMSSGTCKYGSDCKYHHPK 312

Query: 179 ERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGYPINYGLSLPPL 238
           ERIAQ A + +GP GLP RPGQA+C +YSMYGICKFGPTCR+DHP   YP NY LSLP L
Sbjct: 313 ERIAQLATNTMGPFGLPLRPGQAVCPDYSMYGICKFGPTCRYDHPLPTYPYNYSLSLPSL 372

Query: 239 SILDSSLMNHQAISATHSIETSPDASSKIPNWVQNSDAVSV-QHQNPDMKNSTTKNSDDS 297
           S++DSSL+ +  ++       +P + SK+P+ ++N D  S  +HQN D   S TK  DD 
Sbjct: 373 SMMDSSLVTYPRMAQAALSSATPVSLSKLPDLIRNPDGASYNKHQNSD---SNTKTLDDP 429

Query: 298 SK--VDHPPHSVPNCSEPPHD 316
           ++     PPHS    SEP HD
Sbjct: 430 TEHAGSPPPHSSQASSEPSHD 450

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147819907|emb|CAN76191.1| hypothetical protein VITISV_020358 [Vitis vinifera]

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 204/353 (57%), Positives = 249/353 (70%), Gaps = 38/353 (10%)

Query: 1   MRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQY 60
           MRQ+EK C YYMRTG CKFG ACKFHHPQP+S GT LP TG A+ GS GSS+LPSSGL Y
Sbjct: 112 MRQEEKPCSYYMRTGLCKFGAACKFHHPQPASAGTVLPATGPAAFGSTGSSILPSSGLPY 171

Query: 61  AGSLPTWSLQRAPYLSS-RLQGTQSYMPLIVSPSQGIVPAPGWNTYM------------- 106
            G LP WSL RAPY+   R+QG Q+YMP+++SPSQGIVPA GWNTYM             
Sbjct: 172 VGGLPAWSLPRAPYIPGPRMQGPQTYMPIVLSPSQGIVPAQGWNTYMPHFLVLMKSFHVV 231

Query: 107 ------------------GNIGPLSPTSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNL 148
                             GN+ P+S T I GSNL+Y+SRNQ + G+  Q+H+LS+   +L
Sbjct: 232 NLVYSIDPNEFVICEIPRGNMSPISSTGILGSNLVYNSRNQSESGSSGQVHLLSSLIPHL 291

Query: 149 PERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSM 208
           PERPDQP+CRY+M+TG+CKYG+DCK+HHPKERIAQ A + +GPLGLP RPGQA+CS+Y++
Sbjct: 292 PERPDQPECRYFMSTGSCKYGSDCKYHHPKERIAQLATNTLGPLGLPLRPGQAVCSHYNL 351

Query: 209 YGICKFGPTCRFDHPYAGY-PINYGLSLPPLSILDSSLMNHQAISAT-HSIETSPDASSK 266
           YG+CK+GPTC+FDHP  GY   NY LSLPPLSILD SL+ +Q  S+T HS ETSP  SSK
Sbjct: 352 YGLCKYGPTCKFDHPLTGYSSYNYCLSLPPLSILDPSLLPYQRNSSTVHSSETSPSKSSK 411

Query: 267 IPNWVQNSDAVSVQHQNPDMKNSTTKNSDDSSKVDHPPHSVPNCSEPPHDQSN 319
            P+WVQ +++ S + QNPD K          S +    HS PN SEPP DQS+
Sbjct: 412 FPDWVQKTESGSTKSQNPDTKAPEGPPEQAGSLL----HSSPNSSEPPQDQSD 460

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488091|ref|XP_003633700.1| PREDICTED: LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 3-like [Vitis vinifera]

 Score =  332 bits (851), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 154/248 (62%), Positives = 198/248 (79%), Gaps = 2/248 (0%)

Query: 1   MRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQY 60
           MRQ+EK C YYMRTG CKFGVACKFHH QP+S+GT LP+TG+ + GS G S+ PSSGL Y
Sbjct: 71  MRQEEKPCSYYMRTGLCKFGVACKFHHLQPASIGTVLPVTGSVAFGSTGISITPSSGLSY 130

Query: 61  AGSLPTWSLQRAPYLSS-RLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGPLSPTSIAG 119
            G +P W L RAPY+   R+QG Q+YMP+++SPSQGI+PA GWNTYMGN+ P+S TSI G
Sbjct: 131 VGGIPAWLLPRAPYMPGPRMQGPQTYMPIVLSPSQGIIPAQGWNTYMGNMSPISSTSILG 190

Query: 120 SNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKE 179
           SNL+Y+++N  +  +  Q+H+LS S  +LPER DQP+C Y+M+TG+CKY +DCK+HHPKE
Sbjct: 191 SNLVYNTKNPSESSSNGQVHLLSLSIPHLPERRDQPECXYFMSTGSCKYDSDCKYHHPKE 250

Query: 180 RIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGY-PINYGLSLPPL 238
           RIA  A + +GPL LPSRPGQA+C +Y++YG+ ++GPTC+FDHP  GY   NY LSLPPL
Sbjct: 251 RIAXLATNTLGPLDLPSRPGQAVCFHYNLYGLYRYGPTCKFDHPLTGYSSYNYCLSLPPL 310

Query: 239 SILDSSLM 246
           SIL+ SL+
Sbjct: 311 SILEPSLL 318

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554539|ref|XP_003545603.1| PREDICTED: zinc finger CCCH domain-containing protein 3-like [Glycine max]

 Score =  298 bits (762), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 165/317 (52%), Positives = 203/317 (64%), Gaps = 30/317 (9%)

Query: 1   MRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQY 60
           MRQ+EKSCPYYMRTGSCKFGVACKFHHPQ +SLG A PL G     +  S+++P+SGL Y
Sbjct: 130 MRQEEKSCPYYMRTGSCKFGVACKFHHPQYASLG-AYPLAGGPPTPT--STIIPTSGLSY 186

Query: 61  AGSLPTWS-LQRAPYLSSRLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGPLSPTSIAG 119
           AG  P WS + R  YLS   QG QSY+P  +  SQG++P   WN YMGN+ P  P    G
Sbjct: 187 AGGFPAWSAVPRMSYLSG--QGLQSYVPPFLPSSQGVIPVQSWNNYMGNMNPAMPNGFLG 244

Query: 120 SNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKE 179
           SNL+Y   N G+   G Q     A +  LP RPDQP+CRY+M+TGTCKYG+DCKFHHPKE
Sbjct: 245 SNLVYDYMNLGEPLFGGQ-----AINSALPNRPDQPECRYFMSTGTCKYGSDCKFHHPKE 299

Query: 180 RIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGYPINYGLSLPPLS 239
           RI+QS    I PLGLP RPGQA+CS Y +YG+CKFGPTC+FDHP    P NYGL+ P ++
Sbjct: 300 RISQSL---INPLGLPVRPGQAVCSYYRIYGMCKFGPTCKFDHPVLTIPQNYGLTSPAMN 356

Query: 240 ILDSSLMNHQAISATHSIETSPDASSKIPNWVQNSDAVSVQHQNPDMKNSTTKNSDDSSK 299
           +LD+ L   + +S     ETSP   S   N +Q+SDA +                D S +
Sbjct: 357 VLDTPLT--RGLSNVQPPETSPSKLSS-DNKLQHSDAKAA-------------TEDSSKQ 400

Query: 300 VDHPPHSVPNCSEPPHD 316
            D   +S P  +EP HD
Sbjct: 401 DDTTSNSFPASAEPLHD 417

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449450892|ref|XP_004143196.1| PREDICTED: zinc finger CCCH domain-containing protein 3-like [Cucumis sativus] gi|449515163|ref|XP_004164619.1| PREDICTED: zinc finger CCCH domain-containing protein 3-like [Cucumis sativus]

 Score =  297 bits (761), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 162/319 (50%), Positives = 213/319 (66%), Gaps = 22/319 (6%)

Query: 1   MRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQY 60
           MRQ+EKSCPYY+RTGSCKFGV+CKF+HPQPS +G  LP     +LGS G+  +PSSG+ Y
Sbjct: 132 MRQEEKSCPYYLRTGSCKFGVSCKFNHPQPSPVGNMLPQARPGALGSGGTPFMPSSGVPY 191

Query: 61  AGSLPTWSLQRAPYLSSR-LQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGPLSPTSIAG 119
               P WS+ R  Y+    +QG QSY+P++VSPSQG + A  WNTY+ N+ P+ P     
Sbjct: 192 ----PAWSMPRVQYMPGPCVQGQQSYVPVLVSPSQGAIAAQDWNTYVSNVNPILP----- 242

Query: 120 SNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKE 179
            NL Y++ N  D  +  Q+  LS S+  LP+RPDQP+CRY+MN GTCKYG+DCKFHHPK+
Sbjct: 243 -NLGYNNINLEDSYSNGQL-ALSTSTPTLPDRPDQPECRYFMNNGTCKYGSDCKFHHPKQ 300

Query: 180 RIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGYPINYGLSLPPLS 239
           RIAQSA +    LGLPSRPGQAICS Y+MYG+CK+GP+C+FDHP   YP NYG +LP   
Sbjct: 301 RIAQSATNA---LGLPSRPGQAICSYYNMYGLCKYGPSCKFDHPSPTYPYNYGFTLP--- 354

Query: 240 ILDSSLMNHQAISATHSI-ETSPDASSKIPNWVQNSDAVSVQHQNPDMKNSTTKNSDDSS 298
           +LDSS++ + + + T S  ET P   SK   WVQ +D  + + +  D K       ++++
Sbjct: 355 LLDSSIIKYPSNNFTMSSHETLPGTVSKSSEWVQKADPSNNKRRTTDSKVIIDSTGEEAT 414

Query: 299 KVDHPPHSVPNCSEPPHDQ 317
            V     S+P  SE   DQ
Sbjct: 415 SVS---CSLPGGSESLQDQ 430

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356501261|ref|XP_003519444.1| PREDICTED: zinc finger CCCH domain-containing protein 3-like isoform 1 [Glycine max] gi|356501263|ref|XP_003519445.1| PREDICTED: zinc finger CCCH domain-containing protein 3-like isoform 2 [Glycine max]

 Score =  295 bits (755), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 165/318 (51%), Positives = 207/318 (65%), Gaps = 34/318 (10%)

Query: 1   MRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQY 60
           MRQ+EKSCPYYMRTGSCKFGVACKFHHPQ +SLG A PL G+ +     S+++P+SGL Y
Sbjct: 130 MRQEEKSCPYYMRTGSCKFGVACKFHHPQHASLG-AYPLAGSPT---PTSTIIPTSGLPY 185

Query: 61  AGSLPTWS-LQRAPYLSSRLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGPLSPTSIAG 119
           AG  P WS + R  YLS   QG QSY+P  +S SQG++P   WN YMGN+ P  P    G
Sbjct: 186 AGGFPAWSAVPRMSYLSG--QGLQSYVPPFLSSSQGVIPVQSWNNYMGNMNPAMPNGFLG 243

Query: 120 SNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKE 179
           SNL+Y   N G+   G Q     A +  LP RPDQP+CRY+M+TGTCKYG+DCKFHHPKE
Sbjct: 244 SNLVYDYMNLGESLFGGQ-----AINSALPNRPDQPECRYFMSTGTCKYGSDCKFHHPKE 298

Query: 180 RIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGYPINYGLSLPPLS 239
           R++QS    I PLGLP RPGQA+CS Y +YG+CKFGPTC+FDHP    P NYGL+ P ++
Sbjct: 299 RMSQSL---INPLGLPVRPGQAVCSYYRIYGMCKFGPTCKFDHPVLTIPQNYGLTSPAMN 355

Query: 240 ILDSSLMNHQAISATHSIETSPDASSKIPNWVQNSDAVSVQHQNPDMKNSTTKNSDDSSK 299
           +LD+ L   + +S     ETSP   S     +Q+SDA +               ++DSSK
Sbjct: 356 VLDTPLT--RGLSNVQPPETSPSKLSD--KKLQHSDAKAA--------------TEDSSK 397

Query: 300 VDHPP-HSVPNCSEPPHD 316
            D    +S P  +EP H+
Sbjct: 398 QDDTTLNSFPASAEPLHN 415

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357493165|ref|XP_003616871.1| Zinc finger CCCH domain-containing protein [Medicago truncatula] gi|355518206|gb|AES99829.1| Zinc finger CCCH domain-containing protein [Medicago truncatula]

 Score =  287 bits (734), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 153/278 (55%), Positives = 187/278 (67%), Gaps = 19/278 (6%)

Query: 1   MRQDEKSCPYYMRTGSCKFGVACKFHHPQ-PSSLGTALPLTGNASLGSMGSSVLPSSGLQ 59
           MRQ+EKSCPYYMRTGSCKFGVACKFHHPQ  +S G A P+       S  S+ + SSG  
Sbjct: 133 MRQEEKSCPYYMRTGSCKFGVACKFHHPQQAASFGGAYPVAA-----SPPSTTVTSSGFP 187

Query: 60  YAGSLPTWSLQRAPYLSSRLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGPLSPTSIAG 119
           YAG  P WS+ R  YLS   Q  QSY+P  +  SQGI+PA  W+ YMG+I P  PT   G
Sbjct: 188 YAGGFPAWSMPRMSYLSG--QAIQSYVPPFLPSSQGIMPALSWSNYMGSINPAMPTGFIG 245

Query: 120 SNLIYSSRN-QGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPK 178
           SNL+Y   N  G+  +G Q     A + +LP+RP+QPDC+Y+M+TGTCKYG+DCKFHHPK
Sbjct: 246 SNLVYDYMNPAGETLSGGQ-----AMNSSLPDRPEQPDCKYFMSTGTCKYGSDCKFHHPK 300

Query: 179 ERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGYPINYGLSLPPL 238
           ERIAQ+ +  I PLGLP RPG AICS Y +YG+CKFGPTC+FDHP      NYGL  P L
Sbjct: 301 ERIAQTLS--INPLGLPMRPGNAICSYYRIYGVCKFGPTCKFDHPVVAISQNYGLPSPTL 358

Query: 239 SILDSSLM-NHQAISATHSIETSPDASSKIPNWVQNSD 275
           S+ D+SL+ N + +S     ETSP   S   + +Q SD
Sbjct: 359 SVFDASLLTNPRRLSTVQPAETSPSKQST--DKLQQSD 394

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	319
TAIR|locus:2010562	404	AT1G04990 [Arabidopsis thalian	0.752	0.594	0.384	3.7e-48
TAIR|locus:2043368	468	AT2G47850 [Arabidopsis thalian	0.670	0.457	0.411	1.9e-42
TAIR|locus:2101170	448	AT3G48440 [Arabidopsis thalian	0.648	0.462	0.404	1.4e-41
TAIR|locus:2182988	465	AT5G18550 [Arabidopsis thalian	0.708	0.486	0.369	2e-40
TAIR|locus:2081066	462	AT3G06410 [Arabidopsis thalian	0.686	0.474	0.365	3.9e-37
TAIR|locus:2075477	397	ZFN1 "zinc finger protein 1" [	0.673	0.541	0.377	3.1e-35
TAIR|locus:2171407	375	ZFN3 "zinc finger nuclease 3"	0.692	0.589	0.336	2.9e-32
TAIR|locus:2087775	524	HUA1 "ENHANCER OF AG-4 1" [Ara	0.664	0.404	0.334	1.5e-25
TAIR|locus:1006230718	82	AT1G48195 [Arabidopsis thalian	0.247	0.963	0.506	1.9e-21
UNIPROTKB|C9K0K2	112	CPSF4 "Cleavage and polyadenyl	0.200	0.571	0.315	6.4e-07

TAIR|locus:2010562 AT1G04990 [Arabidopsis thaliana (taxid:3702)]

 Score = 422 (153.6 bits), Expect = 3.7e-48, Sum P(2) = 3.7e-48
 Identities = 101/263 (38%), Positives = 134/263 (50%)

Query:    38 PLTGNASLGSMGSSVLPSSGLQYAGSLPTWSLQRAPYLSSRLQGTQSYMPLIVSPSQGIV 97
             P   N    + G S  P++ L+YA  L   S         R Q  QSY+P++VSPSQG +
Sbjct:   161 PQPDNGHSTAYGMSSFPAADLRYASGLTMMSTYGT---LPRPQVPQSYVPILVSPSQGFL 217

Query:    98 PAPGWNTYMGNIGPLSPTSIAGSNLIYSSRNQGDL-GAGAQMHILSASSQNLPERPDQPD 156
             P  GW  YM           A SN +Y+ +NQ    G+ A M +  A ++ L E  DQP+
Sbjct:   218 PPQGWAPYM-----------AASNSMYNVKNQPYYSGSSASMAMAVALNRGLSESSDQPE 266

Query:   157 CRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGP 216
             CR++MNTGTCKYG DCK+ HP  RI+Q   S I P  LP+RPGQ  C N+  YG CKFGP
Sbjct:   267 CRFFMNTGTCKYGDDCKYSHPGVRISQPPPSLINPFVLPARPGQPACGNFRSYGFCKFGP 326

Query:   217 TCRFDHPYAGYPINYGXXXXXXXXXXXXXMNHQAISATHSIETSPDASSKIPNWVQNSDA 276
              C+FDHP   YP                   HQ IS T +   S   S+  P+  + S  
Sbjct:   327 NCKFDHPMLPYP-GLTMATSLPTPFASPVTTHQRISPTPNRSDSKSLSNGKPDVKKESS- 384

Query:   277 VSVQHQNPDMKNSTTKN-SDDSS 298
                + + PD  N   ++ S+D+S
Sbjct:   385 ---ETEKPD--NGEVQDLSEDAS 402

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0007623 "circadian rhythm" evidence=RCA

TAIR|locus:2043368 AT2G47850 [Arabidopsis thaliana (taxid:3702)]

 Score = 449 (163.1 bits), Expect = 1.9e-42, P = 1.9e-42
 Identities = 97/236 (41%), Positives = 134/236 (56%)

Query:     1 MRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQY 60
             +R+ +  C YY++TG CKFG+ CKFHHPQP+  GT +P    AS      SV      QY
Sbjct:   135 VREGDNECSYYLKTGQCKFGITCKFHHPQPA--GTTVP-PPPASAPQFYPSVQSLMPDQY 191

Query:    61 AGSLPTWSLQRAPYL--SSRLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGP-LSP--- 114
              G  P+ SL+ A  L   S +QG  +Y P++++P  G+VP PGW+ Y   + P LSP   
Sbjct:   192 GG--PSSSLRVARTLLPGSYMQG--AYGPMLLTP--GVVPIPGWSPYSAPVSPALSPGAQ 245

Query:   115 -----TSIAGSNLIYSSRNQ--GDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCK 167
                  TS+ G   + S+     G   + +    +    Q  PERP +P+C+YY+ TG CK
Sbjct:   246 HAVGATSLYGVTQLTSTTPSLPGVYPSLSSPTGVIQKEQAFPERPGEPECQYYLKTGDCK 305

Query:   168 YGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHP 223
             +G  CKFHHP++R+   A   + P+GLP RPG   C+ Y   G CKFG TC+FDHP
Sbjct:   306 FGTSCKFHHPRDRVPPRANCVLSPIGLPLRPGVQRCTFYVQNGFCKFGSTCKFDHP 361

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

TAIR|locus:2101170 AT3G48440 [Arabidopsis thaliana (taxid:3702)]

 Score = 441 (160.3 bits), Expect = 1.4e-41, P = 1.4e-41
 Identities = 93/230 (40%), Positives = 131/230 (56%)

Query:     1 MRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLG-TALP-LTGNASLGSMGSSVLPSSGL 58
             +R  E  CPYYMR GSCK+G  CKF+HP P+++G T  P   GN  + S+G+   P +  
Sbjct:   203 LRPGEVECPYYMRNGSCKYGAECKFNHPDPTTIGGTDSPSFRGNNGV-SIGT-FSPKATF 260

Query:    59 QYAGSLPTWSLQRAPYLSSRLQGTQSYMPLIVSPSQGIVPA-PGWNTYMGNI-----GPL 112
             Q   S  +WS  R       + GT  ++P+++S + G+    P WN Y  ++     G  
Sbjct:   261 Q--ASSTSWSSPR------HVNGTSPFIPVMLSQTHGVTSQNPEWNGYQASVYSSERGVF 312

Query:   113 SPTSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADC 172
             SP++   + L+ +S  +  +      H + A  +  PERPDQP+C YYM TG CK+  +C
Sbjct:   313 SPST---TYLMNNSSAETSMLLSQYRHQMPA--EEFPERPDQPECSYYMKTGDCKFKFNC 367

Query:   173 KFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDH 222
             K+HHPK R+ +     +   GLP RP Q IC+ YS YGICKFGP CRFDH
Sbjct:   368 KYHHPKNRLPKLPPYALNDKGLPLRPDQNICTYYSRYGICKFGPACRFDH 417

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2182988 AT5G18550 [Arabidopsis thaliana (taxid:3702)]

 Score = 430 (156.4 bits), Expect = 2.0e-40, P = 2.0e-40
 Identities = 89/241 (36%), Positives = 129/241 (53%)

Query:     1 MRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQY 60
             +R  EK C Y+MRTG CKFG  C++HHP P   G   P        S G ++ PS   Q 
Sbjct:   144 LRPGEKECSYFMRTGQCKFGSTCRYHHPVPP--GVQAPSQQQQQQLSAGPTMYPSLQSQT 201

Query:    61 AGSLPTWSLQRA-PYL--SSRLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGPL-SPTS 116
               S   + +  A P L   S +Q    Y  +++ P  G+VP  GWN Y  ++  + SP +
Sbjct:   202 VPSSQQYGVVLARPQLLPGSYVQSPYGYGQMVLPP--GMVPYSGWNPYQASVSAMPSPGT 259

Query:   117 --IAGSNLIYS----SRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGA 170
                 G++ +Y     S +     +G     +S   Q  P+RP+QP+C+Y+M TG CK+G 
Sbjct:   260 QPSMGTSSVYGITPLSPSAPAYQSGPSSTGVSNKEQTFPQRPEQPECQYFMRTGDCKFGT 319

Query:   171 DCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGYPIN 230
              C+FHHP E  A   AS +  +GLP RPG   C++++ +GICKFGP C+FDH      ++
Sbjct:   320 SCRFHHPMEA-ASPEASTLSHIGLPLRPGAVPCTHFAQHGICKFGPACKFDHSLGSSSLS 378

Query:   231 Y 231
             Y
Sbjct:   379 Y 379

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2081066 AT3G06410 [Arabidopsis thaliana (taxid:3702)]

 Score = 399 (145.5 bits), Expect = 3.9e-37, P = 3.9e-37
 Identities = 86/235 (36%), Positives = 129/235 (54%)

Query:     1 MRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSL-GTAL-PLTGNASLGSMGSSVLPSSGL 58
             +R  EK C YY+RTG CKFG+ C+F+HP P ++ G    P            ++ P+   
Sbjct:   147 LRPGEKECSYYLRTGQCKFGLTCRFNHPVPLAVQGPPQQPQQQQPQPQPQLQTIYPTLQS 206

Query:    59 QYAGSLPTWSL--QRAPYLS-SRLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGPL-SP 114
             Q   S   + L   R  +L+ S LQ    Y P +V P  G+VP  GWN Y  ++  + SP
Sbjct:   207 QSIPSSQQYGLVLTRPSFLTGSYLQSP--YGPPMVLPP-GMVPYSGWNPYQASLSAMPSP 263

Query:   115 TS--IAGSNLIY-----SSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCK 167
              +    GS+ IY     S       G    +   +++S+  P+RPDQP+C+Y+M TG CK
Sbjct:   264 GTQPSIGSSSIYGLTPLSPSATAYTGTYQSVPSSNSTSKEFPQRPDQPECQYFMRTGDCK 323

Query:   168 YGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDH 222
             +G+ C++HHP + +       +  +GLP RPG A C++++ +GICKFGP C+FDH
Sbjct:   324 FGSSCRYHHPVDAVPPKTGIVLSSIGLPLRPGVAQCTHFAQHGICKFGPACKFDH 378

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2075477 ZFN1 "zinc finger protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 381 (139.2 bits), Expect = 3.1e-35, P = 3.1e-35
 Identities = 85/225 (37%), Positives = 116/225 (51%)

Query:     1 MRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQY 60
             +R +E  C Y++RTG CKFG  CKF+HPQP      +P +G  S     +S + S   Q 
Sbjct:   130 LRSNEVDCAYFLRTGHCKFGGTCKFNHPQPQPTNMMVPTSGQQSYPWSRASFIASPRWQD 189

Query:    61 AGSLPTWSLQRAPYLSSRLQGTQSYMPLI--VSPSQGIVPAPGWNTYMGNIGPLSPTSIA 118
               S  +  +   P     +QG   Y   +  VSPS G      +     N    S +   
Sbjct:   190 PSSYASLIM---PQGVVPVQGWNPYSGQLGSVSPS-GTGNDQNYRNLQQNETIESGSQSQ 245

Query:   119 GSNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPK 178
             GS   +S  N G        + L   +   PERP QP+C++YM TG CK+G  CKFHHP+
Sbjct:   246 GS---FSGYNPGSSVPLGGYYALPRENV-FPERPGQPECQFYMKTGDCKFGTVCKFHHPR 301

Query:   179 ERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHP 223
             +R A      +  +GLP RPG+ +C  Y+ YGICKFGP+C+FDHP
Sbjct:   302 DRQAPPPDCLLSSIGLPLRPGEPLCVFYTRYGICKFGPSCKFDHP 346

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003677 "DNA binding" evidence=TAS

GO:0004518 "nuclease activity" evidence=TAS

GO:0005829 "cytosol" evidence=IDA

GO:0010313 "phytochrome binding" evidence=IPI

GO:0017148 "negative regulation of translation" evidence=IMP

GO:0048027 "mRNA 5'-UTR binding" evidence=IPI

TAIR|locus:2171407 ZFN3 "zinc finger nuclease 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
 Identities = 82/244 (33%), Positives = 125/244 (51%)

Query:     2 RQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSG-LQY 60
             R  +  C +Y++TG+CKFGV CKFHHP+ +  G    + G+ S+  +   + P+     Y
Sbjct:    87 RIGQPECEFYLKTGTCKFGVTCKFHHPR-NKAG----IDGSVSVNVLSYPLRPNEDDCSY 141

Query:    61 ---AGSLP---TWSLQRAPYLSSRLQGTQSYMPLIVSPSQGIV--PAPGWN--TYMGNIG 110
                 G      T         S+ L  +    P + S  Q +   P+  W+  +++ N  
Sbjct:   142 FLRIGQCKFGGTCKFNHPQTQSTNLMVSVRGSP-VYSALQSLTGQPSYSWSRTSFVANPP 200

Query:   111 PLS-PTSIAGSNL--IYSSRNQGDLGAGAQMHILSASSQNL-PERPDQPDCRYYMNTGTC 166
              L  P+  A  +   ++SS      G    +   +   +N+ PERP QP+C++YM TG C
Sbjct:   201 RLQDPSGFASGSQGGLFSSGFHS--GNSVPLGFYALPRENVFPERPGQPECQFYMKTGDC 258

Query:   167 KYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAG 226
             K+G  CKFHHP++R        +  +GLP RPG+ +C  YS YGICKFGP+C+FDHP   
Sbjct:   259 KFGTVCKFHHPRDRQTPPPDCVLSSVGLPLRPGEPLCVFYSRYGICKFGPSCKFDHPMRV 318

Query:   227 YPIN 230
             +  N
Sbjct:   319 FTYN 322

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003677 "DNA binding" evidence=TAS

GO:0004518 "nuclease activity" evidence=TAS

TAIR|locus:2087775 HUA1 "ENHANCER OF AG-4 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 295 (108.9 bits), Expect = 1.5e-25, P = 1.5e-25
 Identities = 83/248 (33%), Positives = 116/248 (46%)

Query:     2 RQDEKSCPYYMRTGSCKFGVACKFHHPQ----PSS---LGTALPLTGNASLGSMGSSVLP 54
             R  E  C +YM+TG CKFG++CKFHHP+    PSS   +G+++ LT      +       
Sbjct:   268 RPSEPMCTFYMKTGKCKFGLSCKFHHPKDIQLPSSSQDIGSSVGLTSEPDATNNPHVTFT 327

Query:    55 SSGLQYAGSLPTWSLQ-RAP-YL---SSRLQGTQSYMPLIVSPSQ-GIVP-APGWNTYM- 106
              +    +  LP  S +   P YL   S +   T  Y      P +   +P A G N  + 
Sbjct:   328 PALYHNSKGLPVRSGEVDCPFYLKTGSCKYGATCRYN----HPERTAFIPQAAGVNYSLV 383

Query:   107 -GNIGPLSPTSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGT 165
               N   L+   +  +   Y +  Q  LG      ++SA+    P+RP Q +C YYM TG 
Sbjct:   384 SSNTANLNLGLVTPATSFYQTLTQPTLG------VISAT---YPQRPGQSECDYYMKTGE 434

Query:   166 CKYGADCKFHHPKERIA-------QSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTC 218
             CK+G  CKFHHP +R++       Q     +   G P R G   C  Y   G CK+G TC
Sbjct:   435 CKFGERCKFHHPADRLSAMTKQAPQQPNVKLSLAGYPRREGALNCPYYMKTGTCKYGATC 494

Query:   219 RFDHPYAG 226
             +FDHP  G
Sbjct:   495 KFDHPPPG 502

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0001709 "cell fate determination" evidence=TAS

GO:0003723 "RNA binding" evidence=ISS;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:1006230718 AT1G48195 [Arabidopsis thaliana (taxid:3702)]

 Score = 251 (93.4 bits), Expect = 1.9e-21, P = 1.9e-21
 Identities = 40/79 (50%), Positives = 51/79 (64%)

Query:   144 SSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAIC 203
             S +  PERP +P+C YY+ TG C    +CK+HHPK          +   GLP RPGQAIC
Sbjct:     2 SEEKFPERPGEPECSYYLRTGNCYLKQNCKYHHPKNITPSEPQCTLNDKGLPLRPGQAIC 61

Query:   204 SNYSMYGICKFGPTCRFDH 222
              +YS +GIC+ GPTC+FDH
Sbjct:    62 PHYSRFGICRSGPTCKFDH 80

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|C9K0K2 CPSF4 "Cleavage and polyadenylation-specificity factor subunit 4" [Homo sapiens (taxid:9606)]

 Score = 91 (37.1 bits), Expect = 6.4e-07, Sum P(2) = 6.4e-07
 Identities = 23/73 (31%), Positives = 32/73 (43%)

Query:   155 PDCRYYMNTGTCKYGADCKFHH--PKERIAQS-----AASNIGPLGLPSRPGQAICSNYS 207
             P+C +Y   G C    +C F H  P+ +I             GPL       + IC NY 
Sbjct:    41 PECYFYSKFGECS-NKECPFLHIDPESKIKDCPWYDRGFCKHGPLCRHRHTRRVICVNY- 98

Query:   208 MYGICKFGPTCRF 220
             + G C  GP+C+F
Sbjct:    99 LVGFCPEGPSCKF 111

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_Genewise1_v1.C_LG_XIV3517 hypothetical protein (446 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	319
pfam00642	27	pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H t	4e-09
pfam00642	27	pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H t	7e-08
pfam00642	27	pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H t	1e-06
smart00356	27	smart00356, ZnF_C3H1, zinc finger	3e-05
smart00356	27	smart00356, ZnF_C3H1, zinc finger	6e-04
smart00356	27	smart00356, ZnF_C3H1, zinc finger	0.001

>gnl|CDD|144294 pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H type (and similar)

 Score = 50.6 bits (122), Expect = 4e-09
 Identities = 13/27 (48%), Positives = 16/27 (59%)

Query: 152 PDQPDCRYYMNTGTCKYGADCKFHHPK 178
                CR++  TGTCKYG  CKF H +
Sbjct: 1   YKTELCRFFSRTGTCKYGDRCKFAHGQ 27

Length = 27

>gnl|CDD|144294 pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H type (and similar)

 Score = 47.6 bits (114), Expect = 7e-08
 Identities = 12/22 (54%), Positives = 16/22 (72%)

Query: 8  CPYYMRTGSCKFGVACKFHHPQ 29
          C ++ RTG+CK+G  CKF H Q
Sbjct: 6  CRFFSRTGTCKYGDRCKFAHGQ 27

Length = 27

>gnl|CDD|144294 pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H type (and similar)

 Score = 44.1 bits (105), Expect = 1e-06
 Identities = 9/26 (34%), Positives = 13/26 (50%)

Query: 198 PGQAICSNYSMYGICKFGPTCRFDHP 223
               +C  +S  G CK+G  C+F H 
Sbjct: 1   YKTELCRFFSRTGTCKYGDRCKFAHG 26

Length = 27

>gnl|CDD|214632 smart00356, ZnF_C3H1, zinc finger

 Score = 40.3 bits (95), Expect = 3e-05
 Identities = 9/25 (36%), Positives = 12/25 (48%), Gaps = 1/25 (4%)

Query: 154 QPDCRYYMNTGTCKYGADCKFHHPK 178
              C+++   G C  G  CKF HP 
Sbjct: 4   TELCKFFK-RGYCPRGDRCKFAHPL 27

Length = 27

>gnl|CDD|214632 smart00356, ZnF_C3H1, zinc finger

 Score = 36.5 bits (85), Expect = 6e-04
 Identities = 8/28 (28%), Positives = 12/28 (42%), Gaps = 1/28 (3%)

Query: 197 RPGQAICSNYSMYGICKFGPTCRFDHPY 224
           +    +C  +   G C  G  C+F HP 
Sbjct: 1   KYKTELCKFF-KRGYCPRGDRCKFAHPL 27

Length = 27

>gnl|CDD|214632 smart00356, ZnF_C3H1, zinc finger

 Score = 35.7 bits (83), Expect = 0.001
 Identities = 9/21 (42%), Positives = 12/21 (57%), Gaps = 1/21 (4%)

Query: 8  CPYYMRTGSCKFGVACKFHHP 28
          C ++ + G C  G  CKF HP
Sbjct: 7  CKFF-KRGYCPRGDRCKFAHP 26

Length = 27

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	319
KOG1677	332	consensus CCCH-type Zn-finger protein [General fun	99.74
KOG1677	332	consensus CCCH-type Zn-finger protein [General fun	99.43
PF00642	27	zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and si	98.56
PF00642	27	zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and si	98.36
KOG1763	343	consensus Uncharacterized conserved protein, conta	98.15
COG5063	351	CTH1 CCCH-type Zn-finger protein [General function	98.13
KOG1040	325	consensus Polyadenylation factor I complex, subuni	98.08
KOG2494	331	consensus C3H1-type Zn-finger protein [Transcripti	98.06
smart00356	27	ZnF_C3H1 zinc finger.	97.99
KOG2333	614	consensus Uncharacterized conserved protein [Gener	97.82
KOG1492	377	consensus C3H1-type Zn-finger protein [General fun	97.79
smart00356	27	ZnF_C3H1 zinc finger.	97.76
COG5252	299	Uncharacterized conserved protein, contains CCCH-t	97.56
KOG1040	325	consensus Polyadenylation factor I complex, subuni	97.06
KOG4791	667	consensus Uncharacterized conserved protein [Funct	96.97
COG5063	351	CTH1 CCCH-type Zn-finger protein [General function	96.97
KOG1595	528	consensus CCCH-type Zn-finger protein [General fun	96.92
COG5084	285	YTH1 Cleavage and polyadenylation specificity fact	96.73
KOG2185	486	consensus Predicted RNA-processing protein, contai	96.72
KOG2185	486	consensus Predicted RNA-processing protein, contai	96.46
PF14608	19	zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type	96.43
COG5084	285	YTH1 Cleavage and polyadenylation specificity fact	96.25
PF14608	19	zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type	95.74
KOG1595	528	consensus CCCH-type Zn-finger protein [General fun	95.62
COG5152	259	Uncharacterized conserved protein, contains RING a	94.52
COG5152	259	Uncharacterized conserved protein, contains RING a	93.91
KOG2494	331	consensus C3H1-type Zn-finger protein [Transcripti	93.75
KOG2202	260	consensus U2 snRNP splicing factor, small subunit,	93.71
KOG1039	344	consensus Predicted E3 ubiquitin ligase [Posttrans	93.42
KOG1039	344	consensus Predicted E3 ubiquitin ligase [Posttrans	92.25
KOG1813	313	consensus Predicted E3 ubiquitin ligase [Posttrans	90.67
KOG1763	343	consensus Uncharacterized conserved protein, conta	90.62
KOG2333	614	consensus Uncharacterized conserved protein [Gener	90.09
KOG1813	313	consensus Predicted E3 ubiquitin ligase [Posttrans	89.85
KOG2202	260	consensus U2 snRNP splicing factor, small subunit,	87.79
KOG3702	681	consensus Nuclear polyadenylated RNA binding prote	87.05
KOG1492	377	consensus C3H1-type Zn-finger protein [General fun	80.05

>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]

Probab=99.74  E-value=3.6e-18  Score=162.29  Aligned_cols=79  Identities=34%  Similarity=0.777  Sum_probs=67.7

Q ss_pred             CCCCCCCCcccccccccCcCCC-CCCCCCCCcchhhhccccccCCCCCCCCCCCCcccccccccccCCCCCCCCCCCCCC
Q 020994          147 NLPERPDQPDCRYYMNTGTCKY-GADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYA  225 (319)
Q Consensus       147 ~fPerpgq~lCryF~ktG~CKf-G~~CrFsH~~~~~~~~~~~~ls~~glP~r~~~~~C~~y~r~G~CkfG~~CkF~Hp~~  225 (319)
                      ..+++.++++|++|.++|.|+| |++|+|+|..++.+...  .+...+++.+.++++|.+|.++|.|+||.+|+|.|+..
T Consensus       125 ~~p~~~kt~lc~~~~~~g~c~y~ge~crfah~~~e~r~~~--~~~~~~~~~~~kt~lC~~f~~tG~C~yG~rC~F~H~~~  202 (332)
T KOG1677|consen  125 RKPERYKTPLCRSFRKSGTCKYRGEQCRFAHGLEELRLPS--SENQVGNPPKYKTKLCPKFQKTGLCKYGSRCRFIHGEP  202 (332)
T ss_pred             cCcccccCCcceeeecCccccccCchhhhcCCcccccccc--cchhhcCCCCCCCcCCCccccCCCCCCCCcCeecCCCc
Confidence            3478899999999999999999 99999999998876321  23345677889999999999999999999999999987


Q ss_pred             CC
Q 020994          226 GY  227 (319)
Q Consensus       226 ~l  227 (319)
                      ..
T Consensus       203 ~~  204 (332)
T KOG1677|consen  203 ED  204 (332)
T ss_pred             cc
Confidence            43

>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]

Probab=99.43  E-value=7.7e-13  Score=125.95  Aligned_cols=159  Identities=31%  Similarity=0.634  Sum_probs=87.9

Q ss_pred             CCCCCCcccccccCCCCCCCCCccCCCCCCCcCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCC
Q 020994            2 RQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQYAGSLPTWSLQRAPYLSSRLQG   81 (319)
Q Consensus         2 R~~e~~C~~y~~tg~C~fG~~Ckf~Hp~~~~~~~~~~~~~~~~y~~~~s~~~p~~~~~y~~~~~~w~~~R~p~~~~~~q~   81 (319)
                      +.++++|.+|++||.||||.+|+|+|+........  ..  . + .+..  .+ ..++|+   -.|.  |.-++......
T Consensus       174 ~~kt~lC~~f~~tG~C~yG~rC~F~H~~~~~~~~~--~~--~-~-~~~~--~~-~~~~~~---~~~~--~~~~~~~~~~~  239 (332)
T KOG1677|consen  174 KYKTKLCPKFQKTGLCKYGSRCRFIHGEPEDRASN--RH--P-Y-PVSR--NP-QPQSYG---LTAS--RSSLLNQQSKL  239 (332)
T ss_pred             CCCCcCCCccccCCCCCCCCcCeecCCCccccccc--cC--C-c-cccc--cc-cccccc---hhhc--chhhccccccc
Confidence            67899999999999999999999999988543211  10  1 1 1111  11 223443   1232  22222210011


Q ss_pred             CCCCccceeCCCCCccCCCCCCCccccCCCCCCCccCCCCccccccCCCCCccchhhccccccccCCCCCCCCccccccc
Q 020994           82 TQSYMPLIVSPSQGIVPAPGWNTYMGNIGPLSPTSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYM  161 (319)
Q Consensus        82 p~~y~p~~~~ps~g~~p~~gw~~Y~~~~~~~~p~~~~~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~fPerpgq~lCryF~  161 (319)
                      ...|.+..++  ++++|...             .+.+....++........   +  .......+.|++++.+++|++ +
T Consensus       240 ~~~~~~~~~~--~~~~p~~~-------------~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~p~~~~~~~-~  298 (332)
T KOG1677|consen  240 QQPFAPSGLS--ESVLPRSS-------------QQNLLPQGLRSSSSSHPS---G--SQENVNENGFRARPEQPECRS-M  298 (332)
T ss_pred             cccccccccc--cccCcCCc-------------cccccccccccccccccc---c--chhccccccCcCCCCCCccch-h
Confidence            1112222222  55555111             111111111111100000   0  011224677899999999999 9


Q ss_pred             ccCcCCCCCCCCCCCcchhhhccccccCCCCCCCCCCCCcccccccccccCCCCCCCCC
Q 020994          162 NTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRF  220 (319)
Q Consensus       162 ktG~CKfG~~CrFsH~~~~~~~~~~~~ls~~glP~r~~~~~C~~y~r~G~CkfG~~CkF  220 (319)
                      ++|             .++        |    ++.+++...|..|.++|+|+||..|+|
T Consensus       299 ~~~-------------~~~--------l----~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (332)
T KOG1677|consen  299 KSG-------------ENR--------L----LPLRPGPGACTLFSRYGSCKFGPLCKF  332 (332)
T ss_pred             ccc-------------ccc--------c----cCCCCCcccccccccccccCCCCcCCC
Confidence            988             111        1    567888999999999999999999997

>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.56  E-value=1.4e-08  Score=65.19  Aligned_cols=27  Identities=41%  Similarity=1.038  Sum_probs=21.8

Q ss_pred             CCCcccccccccCcCCCCCCCCCCCcc
Q 020994          152 PDQPDCRYYMNTGTCKYGADCKFHHPK  178 (319)
Q Consensus       152 pgq~lCryF~ktG~CKfG~~CrFsH~~  178 (319)
                      +++.+|++|+++|.|++|++|+|+|++
T Consensus         1 ~k~~~C~~f~~~g~C~~G~~C~f~H~~   27 (27)
T PF00642_consen    1 YKTKLCRFFMRTGTCPFGDKCRFAHGE   27 (27)
T ss_dssp             TTSSB-HHHHHTS--TTGGGSSSBSSG
T ss_pred             CccccChhhccCCccCCCCCcCccCCC
Confidence            467899999999999999999999974

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....

>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.36  E-value=8e-08  Score=61.65  Aligned_cols=27  Identities=44%  Similarity=1.084  Sum_probs=21.6

Q ss_pred             CCCCCcccccccCCCCCCCCCccCCCC
Q 020994            3 QDEKSCPYYMRTGSCKFGVACKFHHPQ   29 (319)
Q Consensus         3 ~~e~~C~~y~~tg~C~fG~~Ckf~Hp~   29 (319)
                      ++.+.|.+|+++|.|+||++|+|.|++
T Consensus         1 ~k~~~C~~f~~~g~C~~G~~C~f~H~~   27 (27)
T PF00642_consen    1 YKTKLCRFFMRTGTCPFGDKCRFAHGE   27 (27)
T ss_dssp             TTSSB-HHHHHTS--TTGGGSSSBSSG
T ss_pred             CccccChhhccCCccCCCCCcCccCCC
Confidence            367899999999999999999999973

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....

>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only]

Probab=98.15  E-value=3.4e-07  Score=88.31  Aligned_cols=77  Identities=25%  Similarity=0.579  Sum_probs=56.0

Q ss_pred             CCCCCCCcccccccccCcCCCCCCCCCCCcchhhhccccccC-------------------CCCCCCCCCCCcccccccc
Q 020994          148 LPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNI-------------------GPLGLPSRPGQAICSNYSM  208 (319)
Q Consensus       148 fPerpgq~lCryF~ktG~CKfG~~CrFsH~~~~~~~~~~~~l-------------------s~~glP~r~~~~~C~~y~r  208 (319)
                      --+.|+..+|-||.. |.|..|+.|+|+|+....+....-.|                   +..+-+......+|+||+.
T Consensus        86 ~gvDPKSvvCafFk~-g~C~KG~kCKFsHdl~~~~k~eK~dly~d~rdemWD~~kl~~vv~~K~~k~k~~tdiVCKfFLe  164 (343)
T KOG1763|consen   86 KGVDPKSVVCAFFKQ-GTCTKGDKCKFSHDLAVERKKEKIDLYPDTRDEMWDEEKLEEVVLKKHGKPKPTTDIVCKFFLE  164 (343)
T ss_pred             cCCCchHHHHHHHhc-cCCCCCCcccccchHHHhhhccchhccccchhhhhhHHHHHHHHHhhccCCCCchhHHHHHHHH
Confidence            356788999999998 99999999999999887765432111                   1112222223469999985


Q ss_pred             ------ccc---CCCC-CCCCCCCCCC
Q 020994          209 ------YGI---CKFG-PTCRFDHPYA  225 (319)
Q Consensus       209 ------~G~---CkfG-~~CkF~Hp~~  225 (319)
                            ||+   |++| +.|.|.|-+.
T Consensus       165 AvE~~kYGWfW~CPnGg~~C~YrHaLP  191 (343)
T KOG1763|consen  165 AVENGKYGWFWECPNGGDKCIYRHALP  191 (343)
T ss_pred             HHhcCCccceeECCCCCCeeeeeecCC
Confidence                  666   9997 6999999864

>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]

Probab=98.13  E-value=6.5e-06  Score=79.93  Aligned_cols=64  Identities=27%  Similarity=0.625  Sum_probs=54.0

Q ss_pred             cccccccccCcCCC---CCCCCCC---CcchhhhccccccCCCCCCCCCCCCcccccccccccCCCCCCCCCCCCCCC
Q 020994          155 PDCRYYMNTGTCKY---GADCKFH---HPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAG  226 (319)
Q Consensus       155 ~lCryF~ktG~CKf---G~~CrFs---H~~~~~~~~~~~~ls~~glP~r~~~~~C~~y~r~G~CkfG~~CkF~Hp~~~  226 (319)
                      .+|.-|...|.|++   |++|-|+   |+..++....        .-..+++..|.+|.+-|.|+||.+|.|.|....
T Consensus       231 ~lc~~ft~kg~~p~~~sG~~~q~a~~~HGlN~l~~k~--------k~~~frTePcinwe~sGyc~yg~Rc~F~hgd~~  300 (351)
T COG5063         231 ELCESFTRKGTCPYWISGVKCQFACRGHGLNELKSKK--------KKQNFRTEPCINWEKSGYCPYGLRCCFKHGDDS  300 (351)
T ss_pred             HHhhccCcCCCCccccccccccccccccccccccccc--------cccccccCCccchhhcccCccccccccccCChh
Confidence            79999999999999   9999999   9977664322        223467899999999999999999999999764

>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]

Probab=98.08  E-value=1.7e-06  Score=84.67  Aligned_cols=76  Identities=22%  Similarity=0.542  Sum_probs=55.5

Q ss_pred             CCCCCcccccccccCcCCCCCCCCCCCcchhhhcccccc-CCCCCC------------CCCCCCcccccccccccCCCCC
Q 020994          150 ERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASN-IGPLGL------------PSRPGQAICSNYSMYGICKFGP  216 (319)
Q Consensus       150 erpgq~lCryF~ktG~CKfG~~CrFsH~~~~~~~~~~~~-ls~~gl------------P~r~~~~~C~~y~r~G~CkfG~  216 (319)
                      +..++.+|+||++ |.|++|+.|-|+|.. ++.+.+.|. +...|.            .-....+.|.+|.+ |+|+-|+
T Consensus        73 ~~~~~~vcK~~l~-glC~kgD~C~Flhe~-~~~k~rec~ff~~~g~c~~~~~c~y~h~dpqt~~k~c~~~~~-g~c~~g~  149 (325)
T KOG1040|consen   73 DSRGKVVCKHWLR-GLCKKGDQCEFLHEY-DLTKMRECKFFSLFGECTNGKDCPYLHGDPQTAIKKCKWYKE-GFCRGGP  149 (325)
T ss_pred             ccCCceeehhhhh-hhhhccCcCcchhhh-hhcccccccccccccccccccCCcccCCChhhhhhccchhhh-ccCCCcc
Confidence            3567889999999 999999999999987 443333222 111111            10124578999999 9999999


Q ss_pred             CCCCCCCCCCCC
Q 020994          217 TCRFDHPYAGYP  228 (319)
Q Consensus       217 ~CkF~Hp~~~l~  228 (319)
                      .|++.|....+-
T Consensus       150 ~c~~~h~~~~~c  161 (325)
T KOG1040|consen  150 SCKKRHERKVLC  161 (325)
T ss_pred             hhhhhhhcccCC
Confidence            999999987653

>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]

Probab=98.06  E-value=1.8e-06  Score=84.06  Aligned_cols=58  Identities=29%  Similarity=0.629  Sum_probs=46.4

Q ss_pred             CcccccccccCcCCCCCC-CCCCCcchhhhccccccCCCCCCCCCCCCcccccccccccCCCCCCCCCCCCCCC
Q 020994          154 QPDCRYYMNTGTCKYGAD-CKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAG  226 (319)
Q Consensus       154 q~lCryF~ktG~CKfG~~-CrFsH~~~~~~~~~~~~ls~~glP~r~~~~~C~~y~r~G~CkfG~~CkF~Hp~~~  226 (319)
                      ..+||-|++ |.|+.|+. |||+|+......            ++-+-..|.-|.+ |.|.. ++|||.|+...
T Consensus        37 ~eVCReF~r-n~C~R~d~~CkfaHP~~~~~V------------~~g~v~aC~Ds~k-grCsR-~nCkylHpp~h   95 (331)
T KOG2494|consen   37 LEVCREFLR-NTCSRGDRECKFAHPPKNCQV------------SNGRVIACFDSQK-GRCSR-ENCKYLHPPQH   95 (331)
T ss_pred             HHHHHHHHh-ccccCCCccccccCCCCCCCc------------cCCeEEEEecccc-CccCc-ccceecCCChh
Confidence            369999999 99999999 999998764311            1223478999999 99995 66999999754

>smart00356 ZnF_C3H1 zinc finger

Probab=97.99  E-value=4.2e-06  Score=52.20  Aligned_cols=26  Identities=38%  Similarity=1.021  Sum_probs=22.2

Q ss_pred             CCCcccccccccCcCCCCCCCCCCCcc
Q 020994          152 PDQPDCRYYMNTGTCKYGADCKFHHPK  178 (319)
Q Consensus       152 pgq~lCryF~ktG~CKfG~~CrFsH~~  178 (319)
                      .++.+|++| ++|.|++|++|+|+|+.
T Consensus         2 ~k~~~C~~~-~~g~C~~g~~C~~~H~~   27 (27)
T smart00356        2 YKTELCKFF-KRGYCPYGDRCKFAHPL   27 (27)
T ss_pred             CCCCcCcCc-cCCCCCCCCCcCCCCcC
Confidence            356789999 55999999999999963

>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]

Probab=97.82  E-value=9.2e-06  Score=83.14  Aligned_cols=62  Identities=24%  Similarity=0.597  Sum_probs=49.6

Q ss_pred             CCccccccccc--CcCCCCCCCCCCCcchhhhccccccCCCCCCCCCCCCcccccccccccCCCCCCCCCCCCC
Q 020994          153 DQPDCRYYMNT--GTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPY  224 (319)
Q Consensus       153 gq~lCryF~kt--G~CKfG~~CrFsH~~~~~~~~~~~~ls~~glP~r~~~~~C~~y~r~G~CkfG~~CkF~Hp~  224 (319)
                      ...+|.-.+..  ..|.||++|||.||.+........         .. ...|.+|..+|.|.||-+|||.-.+
T Consensus        75 ~n~LCPsli~g~~~~C~f~d~Crf~HDi~ayLatK~~---------Di-g~~Cp~f~s~G~Cp~G~~CRFl~aH  138 (614)
T KOG2333|consen   75 QNRLCPSLIQGDISKCSFGDNCRFVHDIEAYLATKAP---------DI-GPSCPVFESLGFCPYGFKCRFLGAH  138 (614)
T ss_pred             hhccChHhhcCCCccCcccccccccccHHHHHhccCc---------cc-CCccceeeccccCCccceeehhhcc
Confidence            35799999985  479999999999999987433211         11 3789999999999999999998554

>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]

Probab=97.79  E-value=1.3e-05  Score=75.84  Aligned_cols=81  Identities=30%  Similarity=0.633  Sum_probs=59.0

Q ss_pred             CCCCCCcccccccccCcCCCCCCCCCCCcchhhhcc-----------ccccCCCCCCCCC--------------------
Q 020994          149 PERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQS-----------AASNIGPLGLPSR--------------------  197 (319)
Q Consensus       149 Perpgq~lCryF~ktG~CKfG~~CrFsH~~~~~~~~-----------~~~~ls~~glP~r--------------------  197 (319)
                      -..+...-||||..+|.|..|..|||.|...+....           .+|+|+..--|.|                    
T Consensus       201 gnspsavycryynangicgkgaacrfvheptrkticpkflngrcnkaedcnlsheldprripacryfllgkcnnpncryv  280 (377)
T KOG1492|consen  201 GNSPSAVYCRYYNANGICGKGAACRFVHEPTRKTICPKFLNGRCNKAEDCNLSHELDPRRIPACRYFLLGKCNNPNCRYV  280 (377)
T ss_pred             CCCCceeEEEEecCCCcccCCceeeeeccccccccChHHhcCccCchhcCCcccccCccccchhhhhhhccCCCCCceEE
Confidence            345667789999999999999999999987665432           3455442211211                    


Q ss_pred             -----CCCcccccccccccCCCCCCCCCCCCCCCCCC
Q 020994          198 -----PGQAICSNYSMYGICKFGPTCRFDHPYAGYPI  229 (319)
Q Consensus       198 -----~~~~~C~~y~r~G~CkfG~~CkF~Hp~~~l~y  229 (319)
                           ...++|..|+++|+|..|..|+-.|-..-..|
T Consensus       281 hihysenapicfefakygfcelgtscknqhilqctdy  317 (377)
T KOG1492|consen  281 HIHYSENAPICFEFAKYGFCELGTSCKNQHILQCTDY  317 (377)
T ss_pred             EEeecCCCceeeeehhcceeccccccccceeeeecch
Confidence                 13578888999999999999999998875544

>smart00356 ZnF_C3H1 zinc finger

Probab=97.76  E-value=2e-05  Score=49.11  Aligned_cols=25  Identities=32%  Similarity=1.008  Sum_probs=21.7

Q ss_pred             CCcccccccccccCCCCCCCCCCCCC
Q 020994          199 GQAICSNYSMYGICKFGPTCRFDHPY  224 (319)
Q Consensus       199 ~~~~C~~y~r~G~CkfG~~CkF~Hp~  224 (319)
                      ++.+|++|. .|.|++|++|+|.|..
T Consensus         3 k~~~C~~~~-~g~C~~g~~C~~~H~~   27 (27)
T smart00356        3 KTELCKFFK-RGYCPYGDRCKFAHPL   27 (27)
T ss_pred             CCCcCcCcc-CCCCCCCCCcCCCCcC
Confidence            467999995 5999999999999973

>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]

Probab=97.56  E-value=2.2e-05  Score=74.22  Aligned_cols=76  Identities=29%  Similarity=0.649  Sum_probs=54.8

Q ss_pred             CCCCCCcccccccccCcCCCCCCCCCCCcchhhhccccccC------CCCCCCC--CC---CCcccccccc------ccc
Q 020994          149 PERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNI------GPLGLPS--RP---GQAICSNYSM------YGI  211 (319)
Q Consensus       149 Perpgq~lCryF~ktG~CKfG~~CrFsH~~~~~~~~~~~~l------s~~glP~--r~---~~~~C~~y~r------~G~  211 (319)
                      -+.+++.+|-.|.. +.|-.|+.|+|+|+.++.+......|      ....+|+  ++   ...+|+||..      ||+
T Consensus        80 gvdpK~~vcalF~~-~~c~kg~~ckF~h~~ee~r~~eK~DLYsDvRd~~ed~pl~krP~intd~VCkffieA~e~GkYgw  158 (299)
T COG5252          80 GVDPKTVVCALFLN-KTCAKGDACKFAHGKEEARKTEKPDLYSDVRDKEEDVPLGKRPWINTDRVCKFFIEAMESGKYGW  158 (299)
T ss_pred             ccCchhHHHHHhcc-CccccCchhhhhcchHHHhhhcccchhhhhhhhhccCCcccCCCCChhHHHHHHHHHHhcCCccc
Confidence            45688999999997 99999999999999887765432211      1111222  22   3468999975      554


Q ss_pred             ---CCCC-CCCCCCCCCC
Q 020994          212 ---CKFG-PTCRFDHPYA  225 (319)
Q Consensus       212 ---CkfG-~~CkF~Hp~~  225 (319)
                         |++| .+|.|.|...
T Consensus       159 ~W~CPng~~~C~y~H~Lp  176 (299)
T COG5252         159 GWTCPNGNMRCSYIHKLP  176 (299)
T ss_pred             eeeCCCCCceeeeeeccC
Confidence               9997 8999999865

>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]

Probab=97.06  E-value=0.00035  Score=68.63  Aligned_cols=82  Identities=23%  Similarity=0.562  Sum_probs=57.3

Q ss_pred             ccCCCCCCCCcccccccccCcCCCCCCCCCCCcchhhhccccccCCCCCC--------CCCCCCcccccccccccCCCCC
Q 020994          145 SQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGL--------PSRPGQAICSNYSMYGICKFGP  216 (319)
Q Consensus       145 ~~~fPerpgq~lCryF~ktG~CKfG~~CrFsH~~~~~~~~~~~~ls~~gl--------P~r~~~~~C~~y~r~G~CkfG~  216 (319)
                      .++| +-.+.++|.||...|.|..|.+|-|.|..-..... .|.+-..|.        -......+|..|.. |+|.-|.
T Consensus        97 lhe~-~~~k~rec~ff~~~g~c~~~~~c~y~h~dpqt~~k-~c~~~~~g~c~~g~~c~~~h~~~~~c~~y~~-gfC~~g~  173 (325)
T KOG1040|consen   97 LHEY-DLTKMRECKFFSLFGECTNGKDCPYLHGDPQTAIK-KCKWYKEGFCRGGPSCKKRHERKVLCPPYNA-GFCPKGP  173 (325)
T ss_pred             hhhh-hhcccccccccccccccccccCCcccCCChhhhhh-ccchhhhccCCCcchhhhhhhcccCCCchhh-hhccCCC
Confidence            4555 45667899999999999999999999977322211 121111111        01122479999998 9999998


Q ss_pred             C-CCCCCCCCCCCC
Q 020994          217 T-CRFDHPYAGYPI  229 (319)
Q Consensus       217 ~-CkF~Hp~~~l~y  229 (319)
                      . |.+.|+...+.-
T Consensus       174 q~c~~~hp~~~~~~  187 (325)
T KOG1040|consen  174 QRCDMLHPEFQQPP  187 (325)
T ss_pred             CcccccCCCCCCCh
Confidence            8 999999987653

>KOG4791 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.97  E-value=0.00054  Score=70.29  Aligned_cols=96  Identities=17%  Similarity=0.339  Sum_probs=61.4

Q ss_pred             cccccccccCcCCCCCCCCCCCcchhhhccccccCCCCCCC-------------CCCCCccccccccccc-CCCCCCCCC
Q 020994          155 PDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLP-------------SRPGQAICSNYSMYGI-CKFGPTCRF  220 (319)
Q Consensus       155 ~lCryF~ktG~CKfG~~CrFsH~~~~~~~~~~~~ls~~glP-------------~r~~~~~C~~y~r~G~-CkfG~~CkF  220 (319)
                      ..|.||.. -.|||++.|.|.|..+.+....+|.+=..+++             +......|-++.+ +. |. -++|-|
T Consensus         4 ~dcyff~y-s~cKk~d~c~~rh~E~al~n~t~C~~w~~~~~C~k~C~YRHSe~~~kr~e~~CYwe~~-p~gC~-k~~Cgf   80 (667)
T KOG4791|consen    4 EDCYFFFY-STCKKGDSCPFRHCEAALGNETVCTLWQEGRCCRKVCRYRHSEIDKKRSEIPCYWENQ-PTGCQ-KLNCGF   80 (667)
T ss_pred             ccchhhhh-hhhhccCcCcchhhHHHhcCcchhhhhhhcCcccccccchhhHHhhhcCcccceeecC-CCccC-CCcccc
Confidence            46999987 88999999999998877765555543211221             1113578999998 77 87 699999


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCcCCCCCC
Q 020994          221 DHPYAGYPINYGLSLPPLSILDSSLMNHQAISATHSIETSPD  262 (319)
Q Consensus       221 ~Hp~~~l~y~~~~S~p~~S~~d~p~~py~~~s~~~~~~~~~~  262 (319)
                      .|....|.         -.+-.||.+|--..+....+|+.++
T Consensus        81 RH~~pPLk---------g~l~~~p~~pe~ev~~~~~SAq~~s  113 (667)
T KOG4791|consen   81 RHNRPPLK---------GVLPTVPESPEEEVKASQLSAQQNS  113 (667)
T ss_pred             ccCCCchh---------hhccCCCCCcccccccccccCCCcc
Confidence            99554331         1345566665444444444555544

>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]

Probab=96.97  E-value=0.00069  Score=66.19  Aligned_cols=70  Identities=16%  Similarity=0.204  Sum_probs=55.0

Q ss_pred             CCCcccccccccCcCCCCCCCCCCCcchhhhccccccCCCCCCC-CCCCCcccccccccccCCCCCCCCCCCCCCCCC
Q 020994          152 PDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLP-SRPGQAICSNYSMYGICKFGPTCRFDHPYAGYP  228 (319)
Q Consensus       152 pgq~lCryF~ktG~CKfG~~CrFsH~~~~~~~~~~~~ls~~glP-~r~~~~~C~~y~r~G~CkfG~~CkF~Hp~~~l~  228 (319)
                      .+++.|..|.+.|.|++|.+|-|.|+.++......       .+ +......|+-++++|.|+.|.+|.|.|....+.
T Consensus       272 frTePcinwe~sGyc~yg~Rc~F~hgd~~~ie~~~-------~~~~~y~~~~crt~~~~g~~p~g~~~c~~~dkkn~~  342 (351)
T COG5063         272 FRTEPCINWEKSGYCPYGLRCCFKHGDDSDIEMYE-------EASLGYLDGPCRTRAKGGAFPSGGAVCKSFDKKNLD  342 (351)
T ss_pred             cccCCccchhhcccCccccccccccCChhhccccc-------cccccccccccccccccCccCCCCchhhccccchhh
Confidence            45678999999999999999999998776532110       01 123457899999999999999999999987654

>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]

Probab=96.92  E-value=0.00082  Score=69.43  Aligned_cols=59  Identities=24%  Similarity=0.520  Sum_probs=50.5

Q ss_pred             CcccccccccCcCCCCCCCCCCCcchhhhccccccCCCCCCCCCCCCcccccccccccCCCCCCCCCCCCCCCC
Q 020994          154 QPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGY  227 (319)
Q Consensus       154 q~lCryF~ktG~CKfG~~CrFsH~~~~~~~~~~~~ls~~glP~r~~~~~C~~y~r~G~CkfG~~CkF~Hp~~~l  227 (319)
                      -..|.-|.| |.|+.||.|-|+|+.-|.          .-+|.++++..|+--   |.|+. .-|-|+|....|
T Consensus       236 ~tpCPefrk-G~C~rGD~CEyaHgvfEc----------wLHPa~YRT~~CkDg---~~C~R-rvCfFAH~~eqL  294 (528)
T KOG1595|consen  236 STPCPEFRK-GSCERGDSCEYAHGVFEC----------WLHPARYRTRKCKDG---GYCPR-RVCFFAHSPEQL  294 (528)
T ss_pred             CccCccccc-CCCCCCCccccccceehh----------hcCHHHhccccccCC---CCCcc-ceEeeecChHHh
Confidence            457999999 999999999999988654          235678899999986   89998 999999998766

>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]

Probab=96.73  E-value=0.0014  Score=63.44  Aligned_cols=79  Identities=27%  Similarity=0.634  Sum_probs=56.6

Q ss_pred             CCCcccccccccCcCCCCCCCCCCCcchhhh--cccc--------ccCCC-----CCCCCCCCCcccccccc--cccCCC
Q 020994          152 PDQPDCRYYMNTGTCKYGADCKFHHPKERIA--QSAA--------SNIGP-----LGLPSRPGQAICSNYSM--YGICKF  214 (319)
Q Consensus       152 pgq~lCryF~ktG~CKfG~~CrFsH~~~~~~--~~~~--------~~ls~-----~glP~r~~~~~C~~y~r--~G~Ckf  214 (319)
                      .....|++|.. |.|+.|..|-|.|..+...  ..+.        |.+.+     ..+| ......|.+|.+  +|+|..
T Consensus       102 ~s~V~c~~~~~-g~c~s~~~c~~lh~~d~~~s~~~~c~~Fs~~G~cs~g~~c~~~h~dp-~~~~~~~~~~~~~~~~f~p~  179 (285)
T COG5084         102 SSSVVCKFFLR-GLCKSGFSCEFLHEYDLRSSQGPPCRSFSLKGSCSSGPSCGYSHIDP-DSFAGNCDQYSGATYGFCPL  179 (285)
T ss_pred             cCCcccchhcc-ccCcCCCccccccCCCcccccCCCcccccccceeccCCCCCccccCc-ccccccccccCcccccccCC
Confidence            34568999998 9999999999999887654  1111        11211     1112 223567999985  699999


Q ss_pred             CCCCCCCCCCCCCCCCCC
Q 020994          215 GPTCRFDHPYAGYPINYG  232 (319)
Q Consensus       215 G~~CkF~Hp~~~l~y~~~  232 (319)
                      |..|+|.|.....+|+.+
T Consensus       180 g~~c~~~H~~~~~~~~~~  197 (285)
T COG5084         180 GASCKFSHTLKRVSYGSS  197 (285)
T ss_pred             CCcccccccccccccccc
Confidence            999999999988877755

>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]

Probab=96.72  E-value=0.00076  Score=68.02  Aligned_cols=57  Identities=26%  Similarity=0.555  Sum_probs=37.0

Q ss_pred             CCCCCCCCCcchhhhc---cccccC-CC------CCCCCCCCCcccccccccccCCCCCCCCCCCCCC
Q 020994          168 YGADCKFHHPKERIAQ---SAASNI-GP------LGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYA  225 (319)
Q Consensus       168 fG~~CrFsH~~~~~~~---~~~~~l-s~------~glP~r~~~~~C~~y~r~G~CkfG~~CkF~Hp~~  225 (319)
                      -|.+|.+-|.-.+..-   .--+.+ ..      +-.|-....++|+||+. |.|+||.+|||.|...
T Consensus        98 ~GsKcsaph~ss~gl~yHna~I~g~E~sarvRVlfl~PTh~sMkpC~ffLe-g~CRF~enCRfSHG~~  164 (486)
T KOG2185|consen   98 DGSKCSAPHTSSRGLYYHNARIIGFEGSARVRVLFLTPTHESMKPCKFFLE-GRCRFGENCRFSHGLD  164 (486)
T ss_pred             cCCcccccccCCccceecceeEEeeccccceEEEeecCcchhhccchHhhc-cccccCcccccccCcc
Confidence            4888988886554311   000000 00      11233345689999999 9999999999999875

>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]

Probab=96.46  E-value=0.0011  Score=66.82  Aligned_cols=32  Identities=25%  Similarity=0.948  Sum_probs=26.4

Q ss_pred             CCCCCCCcccccccccCcCCCCCCCCCCCcchh
Q 020994          148 LPERPDQPDCRYYMNTGTCKYGADCKFHHPKER  180 (319)
Q Consensus       148 fPerpgq~lCryF~ktG~CKfG~~CrFsH~~~~  180 (319)
                      +|.-.....|.||+. |.||||++|||+|+.+-
T Consensus       134 ~PTh~sMkpC~ffLe-g~CRF~enCRfSHG~~V  165 (486)
T KOG2185|consen  134 TPTHESMKPCKFFLE-GRCRFGENCRFSHGLDV  165 (486)
T ss_pred             cCcchhhccchHhhc-cccccCcccccccCccc
Confidence            355555668999998 99999999999998653

>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type

Probab=96.43  E-value=0.0018  Score=38.62  Aligned_cols=19  Identities=42%  Similarity=1.156  Sum_probs=17.1

Q ss_pred             ccccccccCcCCCCCCCCCCCc
Q 020994          156 DCRYYMNTGTCKYGADCKFHHP  177 (319)
Q Consensus       156 lCryF~ktG~CKfG~~CrFsH~  177 (319)
                      .|+||..   |++|++|.|.|+
T Consensus         1 ~Ck~~~~---C~~~~~C~f~HP   19 (19)
T PF14608_consen    1 PCKFGPN---CTNGDNCPFSHP   19 (19)
T ss_pred             CCcCcCC---CCCCCcCccCCc
Confidence            4998886   999999999996

>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]

Probab=96.25  E-value=0.0042  Score=60.18  Aligned_cols=34  Identities=26%  Similarity=0.666  Sum_probs=25.0

Q ss_pred             ccCCCCCC-CCcccccccccCcCCCCCCCCCCCcc
Q 020994          145 SQNLPERP-DQPDCRYYMNTGTCKYGADCKFHHPK  178 (319)
Q Consensus       145 ~~~fPerp-gq~lCryF~ktG~CKfG~~CrFsH~~  178 (319)
                      .+++..+. -...|++|-..|.|..|..|.|.|..
T Consensus       124 lh~~d~~~s~~~~c~~Fs~~G~cs~g~~c~~~h~d  158 (285)
T COG5084         124 LHEYDLRSSQGPPCRSFSLKGSCSSGPSCGYSHID  158 (285)
T ss_pred             ccCCCcccccCCCcccccccceeccCCCCCccccC
Confidence            44443332 34789999666999999999999963

>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type

Probab=95.74  E-value=0.0067  Score=36.20  Aligned_cols=19  Identities=37%  Similarity=0.819  Sum_probs=16.5

Q ss_pred             ccccccccccCCCCCCCCCCCC
Q 020994          202 ICSNYSMYGICKFGPTCRFDHP  223 (319)
Q Consensus       202 ~C~~y~r~G~CkfG~~CkF~Hp  223 (319)
                      .|+||..   |++|+.|.|.|+
T Consensus         1 ~Ck~~~~---C~~~~~C~f~HP   19 (19)
T PF14608_consen    1 PCKFGPN---CTNGDNCPFSHP   19 (19)
T ss_pred             CCcCcCC---CCCCCcCccCCc
Confidence            5888764   999999999997

>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]

Probab=95.62  E-value=0.0097  Score=61.73  Aligned_cols=55  Identities=22%  Similarity=0.523  Sum_probs=41.2

Q ss_pred             CcCCCCCCCCCCCcchhhhccccccCCCCCCCCCCCCcccccccccccCCCCCCCCCCCCCCC
Q 020994          164 GTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAG  226 (319)
Q Consensus       164 G~CKfG~~CrFsH~~~~~~~~~~~~ls~~glP~r~~~~~C~~y~r~G~CkfG~~CkF~Hp~~~  226 (319)
                      +.|.-+-.|-|.|+.+..+...     |...  .+...+|..|.+ |.|+-|+.|.|.|...+
T Consensus       207 ~~shDwteCPf~HpgEkARRRD-----PRky--hYs~tpCPefrk-G~C~rGD~CEyaHgvfE  261 (528)
T KOG1595|consen  207 PRSHDWTECPFAHPGEKARRRD-----PRKY--HYSSTPCPEFRK-GSCERGDSCEYAHGVFE  261 (528)
T ss_pred             ccCCCcccCCccCCCcccccCC-----cccc--cccCccCccccc-CCCCCCCccccccceeh
Confidence            4677789999999776654322     1111  134689999999 99999999999999754

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=94.52  E-value=0.013  Score=54.78  Aligned_cols=28  Identities=39%  Similarity=0.902  Sum_probs=25.4

Q ss_pred             CcccccccccCcCCCCCCCCCCCcchhh
Q 020994          154 QPDCRYYMNTGTCKYGADCKFHHPKERI  181 (319)
Q Consensus       154 q~lCryF~ktG~CKfG~~CrFsH~~~~~  181 (319)
                      ..+|+-|..||.|.||+.|+|.|+++..
T Consensus       141 pdVCKdyk~TGYCGYGDsCKflH~R~D~  168 (259)
T COG5152         141 PDVCKDYKETGYCGYGDSCKFLHDRSDF  168 (259)
T ss_pred             cccccchhhcccccCCchhhhhhhhhhh
Confidence            3589999999999999999999998855

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=93.91  E-value=0.019  Score=53.72  Aligned_cols=29  Identities=28%  Similarity=0.868  Sum_probs=25.9

Q ss_pred             CcccccccccccCCCCCCCCCCCCCCCCC
Q 020994          200 QAICSNYSMYGICKFGPTCRFDHPYAGYP  228 (319)
Q Consensus       200 ~~~C~~y~r~G~CkfG~~CkF~Hp~~~l~  228 (319)
                      ..+|+-|..+|+|-||+.|+|.|....+.
T Consensus       141 pdVCKdyk~TGYCGYGDsCKflH~R~D~K  169 (259)
T COG5152         141 PDVCKDYKETGYCGYGDSCKFLHDRSDFK  169 (259)
T ss_pred             cccccchhhcccccCCchhhhhhhhhhhh
Confidence            46899999999999999999999987543

>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]

Probab=93.75  E-value=0.019  Score=56.55  Aligned_cols=26  Identities=27%  Similarity=0.773  Sum_probs=23.7

Q ss_pred             CcccccccccccCCCCCC-CCCCCCCCC
Q 020994          200 QAICSNYSMYGICKFGPT-CRFDHPYAG  226 (319)
Q Consensus       200 ~~~C~~y~r~G~CkfG~~-CkF~Hp~~~  226 (319)
                      ..+||-|+| |.|+.|++ |||.||...
T Consensus        37 ~eVCReF~r-n~C~R~d~~CkfaHP~~~   63 (331)
T KOG2494|consen   37 LEVCREFLR-NTCSRGDRECKFAHPPKN   63 (331)
T ss_pred             HHHHHHHHh-ccccCCCccccccCCCCC
Confidence            469999999 99999999 999999864

>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]

Probab=93.71  E-value=0.019  Score=54.93  Aligned_cols=28  Identities=29%  Similarity=0.557  Sum_probs=24.8

Q ss_pred             CCCCcccccccccccCCCCCCCCCCCCCC
Q 020994          197 RPGQAICSNYSMYGICKFGPTCRFDHPYA  225 (319)
Q Consensus       197 r~~~~~C~~y~r~G~CkfG~~CkF~Hp~~  225 (319)
                      +++..+|..|.+ +.|..|..|-|.|...
T Consensus       149 ~~rea~C~~~e~-~~C~rG~~CnFmH~k~  176 (260)
T KOG2202|consen  149 DFREAICGQFER-TECSRGGACNFMHVKR  176 (260)
T ss_pred             chhhhhhccccc-ccCCCCCcCcchhhhh
Confidence            446779999999 7999999999999984

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.42  E-value=0.026  Score=56.11  Aligned_cols=24  Identities=38%  Similarity=1.039  Sum_probs=22.7

Q ss_pred             cccccccccCcCCCCCCCCCCCcch
Q 020994          155 PDCRYYMNTGTCKYGADCKFHHPKE  179 (319)
Q Consensus       155 ~lCryF~ktG~CKfG~~CrFsH~~~  179 (319)
                      .+|+||.+ |.|+||+.|||.|.+.
T Consensus         9 tic~~~~~-g~c~~g~~cr~~h~~~   32 (344)
T KOG1039|consen    9 TICKYYQK-GNCKFGDLCRLSHSLP   32 (344)
T ss_pred             hhhhhccc-ccccccceeeeeccCc
Confidence            69999999 9999999999999876

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=92.25  E-value=0.057  Score=53.71  Aligned_cols=24  Identities=46%  Similarity=1.067  Sum_probs=23.2

Q ss_pred             cccccccccccCCCCCCCCCCCCCC
Q 020994          201 AICSNYSMYGICKFGPTCRFDHPYA  225 (319)
Q Consensus       201 ~~C~~y~r~G~CkfG~~CkF~Hp~~  225 (319)
                      .+|+||.+ |.|+||+.|||.|...
T Consensus         9 tic~~~~~-g~c~~g~~cr~~h~~~   32 (344)
T KOG1039|consen    9 TICKYYQK-GNCKFGDLCRLSHSLP   32 (344)
T ss_pred             hhhhhccc-ccccccceeeeeccCc
Confidence            89999999 9999999999999987

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=90.67  E-value=0.076  Score=51.96  Aligned_cols=29  Identities=38%  Similarity=0.851  Sum_probs=25.7

Q ss_pred             CCcccccccccCcCCCCCCCCCCCcchhh
Q 020994          153 DQPDCRYYMNTGTCKYGADCKFHHPKERI  181 (319)
Q Consensus       153 gq~lCryF~ktG~CKfG~~CrFsH~~~~~  181 (319)
                      -.-+|+-|..||.|-||+.|+|.|++...
T Consensus       185 qpDicKdykeTgycg~gdSckFlh~r~Dy  213 (313)
T KOG1813|consen  185 QPDICKDYKETGYCGYGDSCKFLHDRSDY  213 (313)
T ss_pred             CchhhhhhHhhCcccccchhhhhhhhhhc
Confidence            34589999999999999999999998744

>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only]

Probab=90.62  E-value=0.07  Score=52.32  Aligned_cols=29  Identities=31%  Similarity=0.801  Sum_probs=26.3

Q ss_pred             CCCCcccccccccccCCCCCCCCCCCCCCC
Q 020994          197 RPGQAICSNYSMYGICKFGPTCRFDHPYAG  226 (319)
Q Consensus       197 r~~~~~C~~y~r~G~CkfG~~CkF~Hp~~~  226 (319)
                      .+++.+|.||.+ |.|.-|+.|+|.|....
T Consensus        89 DPKSvvCafFk~-g~C~KG~kCKFsHdl~~  117 (343)
T KOG1763|consen   89 DPKSVVCAFFKQ-GTCTKGDKCKFSHDLAV  117 (343)
T ss_pred             CchHHHHHHHhc-cCCCCCCcccccchHHH
Confidence            567889999999 99999999999999864

>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]

Probab=90.09  E-value=0.12  Score=53.93  Aligned_cols=21  Identities=33%  Similarity=0.928  Sum_probs=19.3

Q ss_pred             ccccccccCcCCCCCCCCCCC
Q 020994          156 DCRYYMNTGTCKYGADCKFHH  176 (319)
Q Consensus       156 lCryF~ktG~CKfG~~CrFsH  176 (319)
                      .|..|...|.|.+|-+|||.-
T Consensus       116 ~Cp~f~s~G~Cp~G~~CRFl~  136 (614)
T KOG2333|consen  116 SCPVFESLGFCPYGFKCRFLG  136 (614)
T ss_pred             ccceeeccccCCccceeehhh
Confidence            599999999999999999963

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=89.85  E-value=0.1  Score=51.10  Aligned_cols=28  Identities=36%  Similarity=0.949  Sum_probs=25.3

Q ss_pred             CcccccccccccCCCCCCCCCCCCCCCC
Q 020994          200 QAICSNYSMYGICKFGPTCRFDHPYAGY  227 (319)
Q Consensus       200 ~~~C~~y~r~G~CkfG~~CkF~Hp~~~l  227 (319)
                      ..+|+-|..||+|-||+.|+|.|....+
T Consensus       186 pDicKdykeTgycg~gdSckFlh~r~Dy  213 (313)
T KOG1813|consen  186 PDICKDYKETGYCGYGDSCKFLHDRSDY  213 (313)
T ss_pred             chhhhhhHhhCcccccchhhhhhhhhhc
Confidence            3589999999999999999999998754

>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]

Probab=87.79  E-value=0.17  Score=48.66  Aligned_cols=34  Identities=32%  Similarity=0.802  Sum_probs=29.2

Q ss_pred             CCCCcccccccCCCCCCCCCccCCCCCCCcCccc
Q 020994            4 DEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTAL   37 (319)
Q Consensus         4 ~e~~C~~y~~tg~C~fG~~Ckf~Hp~~~~~~~~~   37 (319)
                      ++..|.||+|||-|++|+.|.-.|-.|.-..+++
T Consensus        14 dKv~c~fy~k~gacR~gdrcsR~h~kpt~s~t~l   47 (260)
T KOG2202|consen   14 DKVNCSFYFKIGACRHGDRCSRLHEKPTFSQTVL   47 (260)
T ss_pred             cccccchHHhhcccccccHHHHhhcccccchHHH
Confidence            4568999999999999999999999998665443

>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]

Probab=87.05  E-value=0.82  Score=48.99  Aligned_cols=23  Identities=26%  Similarity=0.713  Sum_probs=17.2

Q ss_pred             CcccccccccccCCCCCCCCCCCCCCC
Q 020994          200 QAICSNYSMYGICKFGPTCRFDHPYAG  226 (319)
Q Consensus       200 ~~~C~~y~r~G~CkfG~~CkF~Hp~~~  226 (319)
                      ..+|+|+   |.|+ -..|+|.||...
T Consensus       625 ~~~CrY~---pnCr-nm~C~F~HPk~c  647 (681)
T KOG3702|consen  625 RGLCRYR---PNCR-NMQCKFYHPKTC  647 (681)
T ss_pred             cccceec---cCcC-CccccccCCccc
Confidence            4577776   5677 478999999864

>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]

Probab=80.05  E-value=1  Score=43.18  Aligned_cols=26  Identities=38%  Similarity=0.850  Sum_probs=22.4

Q ss_pred             CCCCcccccccCCCCCCCCCccCCCC
Q 020994            4 DEKSCPYYMRTGSCKFGVACKFHHPQ   29 (319)
Q Consensus         4 ~e~~C~~y~~tg~C~fG~~Ckf~Hp~   29 (319)
                      ...-|.||--+|-|.-|..|||-|-.
T Consensus       205 savycryynangicgkgaacrfvhep  230 (377)
T KOG1492|consen  205 SAVYCRYYNANGICGKGAACRFVHEP  230 (377)
T ss_pred             ceeEEEEecCCCcccCCceeeeeccc
Confidence            34569999999999999999999853

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	319
1rgo_A	70	Structural Basis For Recognition Of The Mrna Class		7e-04

>pdb|1RGO|A Chain A, Structural Basis For Recognition Of The Mrna Class Ii Au- Rich Element By The Tandem Zinc Finger Domain Of Tis11d Length = 70

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 8/66 (12%)
Query: 157 CRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGP 216
           CR +  +GTCKYG  C+F H            +  L    +    +C  +   G C +GP
Sbjct: 9   CRPFEESGTCKYGEKCQFAH--------GFHELRSLTRHPKYKTELCRTFHTIGFCPYGP 60
Query: 217 TCRFDH 222
            C F H
Sbjct: 61  RCHFIH 66

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	319
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	6e-15
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	3e-06
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	1e-05
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	1e-04
2cqe_A	98	KIAA1064 protein; CCCH zinc-finger, structural gen	3e-08
2rhk_C	72	Cleavage and polyadenylation specificity factor su	3e-05
2d9n_A	77	Cleavage and polyadenylation specificity factor, 3	5e-05
3d2q_A	70	Muscleblind-like protein 1; tandem zinc finger dom	2e-04

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Length = 77

 Score = 68.1 bits (166), Expect = 6e-15
 Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 8/67 (11%)

Query: 157 CRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGP 216
           CR Y  +G C+YGA C+F H            +       +    +C  + + G C +G 
Sbjct: 15  CRTYSESGRCRYGAKCQFAHGLG--------ELRQANRHPKYKTELCHKFKLQGRCPYGS 66

Query: 217 TCRFDHP 223
            C F H 
Sbjct: 67  RCHFIHN 73

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Length = 77

 Score = 43.4 bits (102), Expect = 3e-06
 Identities = 8/23 (34%), Positives = 10/23 (43%)

Query: 157 CRYYMNTGTCKYGADCKFHHPKE 179
           C  +   G C YG+ C F H   
Sbjct: 53  CHKFKLQGRCPYGSRCHFIHNPT 75

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Length = 77

 Score = 41.9 bits (98), Expect = 1e-05
 Identities = 7/29 (24%), Positives = 11/29 (37%)

Query: 1  MRQDEKSCPYYMRTGSCKFGVACKFHHPQ 29
           +   + C  +   G C +G  C F H  
Sbjct: 46 PKYKTELCHKFKLQGRCPYGSRCHFIHNP 74

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Length = 77

 Score = 39.2 bits (91), Expect = 1e-04
 Identities = 8/22 (36%), Positives = 12/22 (54%)

Query: 8  CPYYMRTGSCKFGVACKFHHPQ 29
          C  Y  +G C++G  C+F H  
Sbjct: 15 CRTYSESGRCRYGAKCQFAHGL 36

>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1 Length = 98

 Score = 49.7 bits (118), Expect = 3e-08
 Identities = 17/81 (20%), Positives = 25/81 (30%), Gaps = 24/81 (29%)

Query: 142 SASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQA 201
           S+ S     +  +  C++Y+ TG C    +C + H                         
Sbjct: 2   SSGSSGELPKKREL-CKFYI-TGFCARAENCPYMHG----------------------DF 37

Query: 202 ICSNYSMYGICKFGPTCRFDH 222
            C  Y   G C  G  C F H
Sbjct: 38  PCKLYHTTGNCINGDDCMFSH 58

>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens} Length = 72

 Score = 40.6 bits (95), Expect = 3e-05
 Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 19/67 (28%)

Query: 157 CRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGP 216
           C++++  G CK G  C+F H  +                ++   + C  YS +G C    
Sbjct: 19  CKHWLR-GLCKKGDQCEFLHEYD---------------MTK--MSECYFYSKFGECS-NK 59

Query: 217 TCRFDHP 223
            C F H 
Sbjct: 60  ECPFLHI 66

>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 77

 Score = 40.3 bits (94), Expect = 5e-05
 Identities = 16/66 (24%), Positives = 22/66 (33%), Gaps = 19/66 (28%)

Query: 157 CRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGP 216
           C++++  G CK G  C+F H                          C  YS +G C    
Sbjct: 13  CKHWLR-GLCKKGDQCEFLHE-----------------YDMTKMPECYFYSKFGEC-SNK 53

Query: 217 TCRFDH 222
            C F H
Sbjct: 54  ECPFLH 59

>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A Length = 70

 Score = 38.5 bits (89), Expect = 2e-04
 Identities = 18/75 (24%), Positives = 28/75 (37%), Gaps = 15/75 (20%)

Query: 151 RPDQPD-CRYYMNTGTCKYG-ADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSM 208
           R D+ + CR Y   G C  G  DC+F HP +                +     +C +Y  
Sbjct: 2   RTDRLEVCREYQR-GNCNRGENDCRFAHPADSTMID----------TNDNTVTVCMDYIK 50

Query: 209 YGICKFGPTCRFDHP 223
               +    C++ HP
Sbjct: 51  GRCSR--EKCKYFHP 63

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	319
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	99.6
2cqe_A	98	KIAA1064 protein; CCCH zinc-finger, structural gen	99.41
2d9n_A	77	Cleavage and polyadenylation specificity factor, 3	99.34
2rhk_C	72	Cleavage and polyadenylation specificity factor su	99.31
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	99.11
3d2q_A	70	Muscleblind-like protein 1; tandem zinc finger dom	99.09
2e5s_A	98	Otthump00000018578; ZF-CCCHX2 domain, muscleblind-	99.06
2cqe_A	98	KIAA1064 protein; CCCH zinc-finger, structural gen	98.93
2d9n_A	77	Cleavage and polyadenylation specificity factor, 3	98.84
3d2n_A	83	Muscleblind-like protein 1; tandem zinc finger dom	98.84
2rpp_A	89	Muscleblind-like protein 2; zinc finger domain, C3	98.65
2rhk_C	72	Cleavage and polyadenylation specificity factor su	98.41
3d2q_A	70	Muscleblind-like protein 1; tandem zinc finger dom	97.91
2d9m_A	69	Zinc finger CCCH-type domain containing protein 7A	97.89
2e5s_A	98	Otthump00000018578; ZF-CCCHX2 domain, muscleblind-	97.84
3d2n_A	83	Muscleblind-like protein 1; tandem zinc finger dom	97.55
3u9g_A	229	Zinc finger CCCH-type antiviral protein 1; zinc fi	97.33
3u9g_A	229	Zinc finger CCCH-type antiviral protein 1; zinc fi	97.15
2d9m_A	69	Zinc finger CCCH-type domain containing protein 7A	97.02
2fc6_A	50	Nuclear, target of EGR1, member 1; structure genom	96.53
2fc6_A	50	Nuclear, target of EGR1, member 1; structure genom	95.95
2rpp_A	89	Muscleblind-like protein 2; zinc finger domain, C3	95.37
2lhn_A	80	Nuclear polyadenylated RNA-binding protein NAB2; n	93.98
3u1l_A	240	PRE-mRNA-splicing factor CWC2; CSMP, zinc finger;	93.9
2lhn_A	80	Nuclear polyadenylated RNA-binding protein NAB2; n	92.59
3u1l_A	240	PRE-mRNA-splicing factor CWC2; CSMP, zinc finger;	92.06
3v33_A	223	Ribonuclease ZC3H12A; rossmann-like sandwich fold,	80.46

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A

Probab=99.60  E-value=2.7e-16  Score=119.88  Aligned_cols=68  Identities=31%  Similarity=0.759  Sum_probs=30.5

Q ss_pred             CCCCCcccccccccCcCCCCCCCCCCCcchhhhccccccCCCCCCCCCCCCcccccccccccCCCCCCCCCCCCCC
Q 020994          150 ERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYA  225 (319)
Q Consensus       150 erpgq~lCryF~ktG~CKfG~~CrFsH~~~~~~~~~~~~ls~~glP~r~~~~~C~~y~r~G~CkfG~~CkF~Hp~~  225 (319)
                      .+.++.+|++|+++|.|++|++|+|+|+.++++...       ..| +.++.+|++|..+|.|++|++|+|.|...
T Consensus         8 ~~~kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~~~~-------~~~-~~k~~~C~~f~~~G~C~~G~~C~f~H~~~   75 (77)
T 1m9o_A            8 SRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQAN-------RHP-KYKTELCHKFKLQGRCPYGSRCHFIHNPT   75 (77)
T ss_dssp             SCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGGTC----------------------------------------
T ss_pred             CCccchhCHHhhhCCCcCCCCCccCCCCChhhcccc-------ccc-cccCCcccchhhCcCCCCcCcCCCCCCCC
Confidence            456889999998789999999999999998875422       112 34578999888789999999999999865

>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1

Probab=99.41  E-value=1.5e-13  Score=111.12  Aligned_cols=57  Identities=25%  Similarity=0.579  Sum_probs=49.6

Q ss_pred             cCCCCCCCCcccccccccCcCCCCCCCCCCCcchhhhccccccCCCCCCCCCCCCcccccccccccCCCCCCCCCCCCCC
Q 020994          146 QNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYA  225 (319)
Q Consensus       146 ~~fPerpgq~lCryF~ktG~CKfG~~CrFsH~~~~~~~~~~~~ls~~glP~r~~~~~C~~y~r~G~CkfG~~CkF~Hp~~  225 (319)
                      +.+..+.++.+|+||++ |.|++|++|+|+|+                      +.+|++|++.|.|++|++|+|.|...
T Consensus         5 H~~~~~~k~~lC~~f~~-G~C~~G~~C~f~H~----------------------~~~C~~f~~~G~C~~G~~C~f~H~~~   61 (98)
T 2cqe_A            5 SSGELPKKRELCKFYIT-GFCARAENCPYMHG----------------------DFPCKLYHTTGNCINGDDCMFSHDPL   61 (98)
T ss_dssp             CCCCCSCCCSBCTTTTT-TCCSCSTTCSSBSS----------------------SSBCSHHHHTSCCSSCTTCSSBCCCC
T ss_pred             ccCCCCCCCccCccccc-CcCCCCCCCCCCCC----------------------CCcCcCcccCCcCCCCCCCcccCCCC
Confidence            34556678999999985 99999999999997                      36899997669999999999999964

>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.34  E-value=4.1e-13  Score=103.76  Aligned_cols=57  Identities=28%  Similarity=0.613  Sum_probs=49.5

Q ss_pred             CCCCcccccccccCcCCCCCCCCCCCcchhhhccccccCCCCCCCCCCCCcccccccccccCCCCCCCCCCCCCCC
Q 020994          151 RPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAG  226 (319)
Q Consensus       151 rpgq~lCryF~ktG~CKfG~~CrFsH~~~~~~~~~~~~ls~~glP~r~~~~~C~~y~r~G~CkfG~~CkF~Hp~~~  226 (319)
                      ..++.+|+||++ |.|++|++|+|+|+.+..                 +.++|+||+++|.|. |++|+|.|....
T Consensus         7 ~~k~~~C~~fl~-G~C~~G~~C~fsH~~~~~-----------------~~~~C~~f~~~G~C~-~~~C~f~H~~~~   63 (77)
T 2d9n_A            7 GEKTVVCKHWLR-GLCKKGDQCEFLHEYDMT-----------------KMPECYFYSKFGECS-NKECPFLHIDPE   63 (77)
T ss_dssp             CCTTSBCHHHHT-TCCSCTTSSSSBCSCCTT-----------------TSCBCHHHHHTCCCC-CSSCSSBCCCTT
T ss_pred             CCcceeCHhHcc-CcCCCCCCCCCccccccC-----------------cCCCCcccCCCCccC-CCCeeccCCCcc
Confidence            356789999999 999999999999987531                 256899999999999 999999999864

>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}

Probab=99.31  E-value=4.4e-13  Score=102.85  Aligned_cols=59  Identities=27%  Similarity=0.565  Sum_probs=50.7

Q ss_pred             CCCCCCcccccccccCcCCCCCCCCCCCcchhhhccccccCCCCCCCCCCCCcccccccccccCCCCCCCCCCCCCCC
Q 020994          149 PERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAG  226 (319)
Q Consensus       149 Perpgq~lCryF~ktG~CKfG~~CrFsH~~~~~~~~~~~~ls~~glP~r~~~~~C~~y~r~G~CkfG~~CkF~Hp~~~  226 (319)
                      ....++.+|+||++ |.|++|++|+|+|+.+..                 +.++|+||+++|.|.+ ++|+|.|....
T Consensus        11 ~~~~k~~vCk~fl~-G~C~~G~~C~fsH~~~~~-----------------~~~~C~~f~~~G~C~~-~~C~y~H~~p~   69 (72)
T 2rhk_C           11 MSGEKTVVCKHWLR-GLCKKGDQCEFLHEYDMT-----------------KMSECYFYSKFGECSN-KECPFLHIDPE   69 (72)
T ss_dssp             SSCCCCSBCHHHHT-TCCCCGGGSSSBCSCCTT-----------------SCCBCHHHHHHSCCSB-TTCCSBCCCCC
T ss_pred             CCCCcCeeCHHHhc-CCCCCCCCCCCccccccc-----------------cCCcccccCCCCCCCC-CCeeccCCCcc
Confidence            34567889999999 999999999999986421                 3579999999999999 99999999764

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A

Probab=99.11  E-value=2.8e-11  Score=92.03  Aligned_cols=26  Identities=31%  Similarity=0.903  Sum_probs=23.8

Q ss_pred             CCCCcccccccCCCCCCCCCccCCCC
Q 020994            4 DEKSCPYYMRTGSCKFGVACKFHHPQ   29 (319)
Q Consensus         4 ~e~~C~~y~~tg~C~fG~~Ckf~Hp~   29 (319)
                      ..+.|.+|+++|.|+||+.|+|.|..
T Consensus        11 kt~~C~~f~~~G~C~~G~~C~f~H~~   36 (77)
T 1m9o_A           11 KTELCRTYSESGRCRYGAKCQFAHGL   36 (77)
T ss_dssp             CSCCCSGGGGTSCCTTTTTCSSCSSS
T ss_pred             cchhCHHhhhCCCcCCCCCccCCCCC
Confidence            45789999999999999999999975

>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A

Probab=99.09  E-value=1.9e-11  Score=92.88  Aligned_cols=61  Identities=31%  Similarity=0.730  Sum_probs=48.8

Q ss_pred             CCcccccccccCcCCCCC-CCCCCCcchhhhccccccCCCCCCCCCCCCcccccccccccCCCCCCCCCCCCCCC
Q 020994          153 DQPDCRYYMNTGTCKYGA-DCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAG  226 (319)
Q Consensus       153 gq~lCryF~ktG~CKfG~-~CrFsH~~~~~~~~~~~~ls~~glP~r~~~~~C~~y~r~G~CkfG~~CkF~Hp~~~  226 (319)
                      +..+|++|++ |.|+.|+ .|+|+|+.+.....          +...+..+|.+|++ |.|..| .|+|.|+...
T Consensus         5 k~~vC~~f~~-G~C~rg~~~C~f~H~~~~~~~~----------~~~~~~~vC~~flk-G~C~r~-~C~y~H~~~~   66 (70)
T 3d2q_A            5 RLEVCREYQR-GNCNRGENDCRFAHPADSTMID----------TNDNTVTVCMDYIK-GRCSRE-KCKYFHPPAH   66 (70)
T ss_dssp             EEEBCHHHHT-TCCSSCTTTCSSBCCCTTSCCB----------TTTTEEEBCHHHHT-TCCCCT-TCCSBCCCHH
T ss_pred             cchhCHHHhc-CCCCCCCCCCCCccCccccccc----------ccCCcceeccccCc-CCCCCC-CcCeeCCHHH
Confidence            3468999987 9999999 59999988654211          11234789999999 999999 9999998754

>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.06  E-value=1.7e-11  Score=99.37  Aligned_cols=65  Identities=29%  Similarity=0.654  Sum_probs=51.9

Q ss_pred             CCCCCCcccccccccCcCCCCC-CCCCCCcchhhhccccccCCCCCCCCCCCCcccccccccccCCCCCCCCCCCCCCC
Q 020994          149 PERPDQPDCRYYMNTGTCKYGA-DCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAG  226 (319)
Q Consensus       149 Perpgq~lCryF~ktG~CKfG~-~CrFsH~~~~~~~~~~~~ls~~glP~r~~~~~C~~y~r~G~CkfG~~CkF~Hp~~~  226 (319)
                      ....+..+|++|++ |.|+.|+ .|+|+|+.+.....          +......+|.+|++ |.|..| .|+|.|+...
T Consensus        15 ~~~~k~~VCr~Flr-G~C~rgd~~C~FsH~~~~~~~~----------~~~~~~~vC~~flk-G~C~r~-~C~y~H~~~~   80 (98)
T 2e5s_A           15 LRTDKLEVCREFQR-GNCARGETDCRFAHPADSTMID----------TSDNTVTVCMDYIK-GRCMRE-KCKYFHPPAH   80 (98)
T ss_dssp             CCSSEEEBCSHHHH-TCCSSHHHHCSSBCCSSCCSCC----------TTTCEEEBCHHHHH-TCCCCT-TCCSBCCCHH
T ss_pred             cChhhhhhhHHHhc-CcCCCCCCCCCCcCCchhcccc----------ccCCccccchhhcc-CCCCCC-CcCccCChHH
Confidence            34445679999999 9999999 79999998754211          11235689999999 999999 9999999754

>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1

Probab=98.93  E-value=2.1e-10  Score=92.64  Aligned_cols=56  Identities=20%  Similarity=0.352  Sum_probs=38.2

Q ss_pred             ccccccccCcCCCCCCCCCCCcchhhhccc--cccCCCCCCCCCCCCccccccccccc
Q 020994          156 DCRYYMNTGTCKYGADCKFHHPKERIAQSA--ASNIGPLGLPSRPGQAICSNYSMYGI  211 (319)
Q Consensus       156 lCryF~ktG~CKfG~~CrFsH~~~~~~~~~--~~~ls~~glP~r~~~~~C~~y~r~G~  211 (319)
                      +|++|+.+|.|++|++|+|+|+........  ...|...+.+.+.+++.|..+.++|+
T Consensus        38 ~C~~f~~~G~C~~G~~C~f~H~~~~~~~~~~l~~~l~~~~~~~~~~e~e~~~~~k~~~   95 (98)
T 2cqe_A           38 PCKLYHTTGNCINGDDCMFSHDPLTEETRELLDKMLADDAEAGAEDEKEVEELKKSGP   95 (98)
T ss_dssp             BCSHHHHTSCCSSCTTCSSBCCCCCHHHHHHHHHHHHHHHHSCCCCCCCCCCSCCCCC
T ss_pred             cCcCcccCCcCCCCCCCcccCCCCcccchhHHhhhcchhhhhccCCcHHHHHHHHcCC
Confidence            599997669999999999999854321110  01122223355777899999998775

>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.84  E-value=1.8e-09  Score=83.19  Aligned_cols=36  Identities=22%  Similarity=0.566  Sum_probs=30.7

Q ss_pred             ccccccccCcCCCCCCCCCCCcchhhhccccccCCCCCCCCCCCCcccccccccc
Q 020994          156 DCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYG  210 (319)
Q Consensus       156 lCryF~ktG~CKfG~~CrFsH~~~~~~~~~~~~ls~~glP~r~~~~~C~~y~r~G  210 (319)
                      +|+||+++|.|. |++|+|.|....                 .++.+|.+|++ |
T Consensus        40 ~C~~f~~~G~C~-~~~C~f~H~~~~-----------------~~~~~C~~f~~-g   75 (77)
T 2d9n_A           40 ECYFYSKFGECS-NKECPFLHIDPE-----------------SKIKDCPWSGP-S   75 (77)
T ss_dssp             BCHHHHHTCCCC-CSSCSSBCCCTT-----------------SSCSSSSCCTT-T
T ss_pred             CCcccCCCCccC-CCCeeccCCCcc-----------------ccCCCCccccc-C
Confidence            799999989999 999999997632                 24689999998 5

>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}

Probab=98.84  E-value=1.1e-09  Score=86.34  Aligned_cols=59  Identities=27%  Similarity=0.581  Sum_probs=48.0

Q ss_pred             CCcccccccccCcCCCCC-CCCCCCcchhhhccccccCCCCCCCCCCCCcccccccccccCCCCCCCCCCCCCCC
Q 020994          153 DQPDCRYYMNTGTCKYGA-DCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAG  226 (319)
Q Consensus       153 gq~lCryF~ktG~CKfG~-~CrFsH~~~~~~~~~~~~ls~~glP~r~~~~~C~~y~r~G~CkfG~~CkF~Hp~~~  226 (319)
                      +..+|++|++ |.|+.|+ .|+|+|+.......            .-...+|.+|++ |.|..+ .|+|.|+...
T Consensus         8 ~~~VCr~Flr-G~C~r~d~~C~f~H~~~~~~~~------------~~~~~vC~dflk-G~C~r~-~C~y~H~~~~   67 (83)
T 3d2n_A            8 TLEVCREFQR-GTCSRPDTECKFAHPSKSCQVE------------NGRVIACFDSLK-GRCSRE-NCKYLHPPPH   67 (83)
T ss_dssp             EEEBCTTGGG-TCCCSCTTTCSSBCCCTTCCEE------------TTEEECCHHHHT-TCCCCS-SCSSCCCCHH
T ss_pred             cchhcHHHhc-CCCCCCCCCCCCcCCCcccccc------------CCceeehhHhhh-ccccCC-CcceeCChHH
Confidence            4568999999 9999997 99999998643110            123689999999 999999 9999999753

>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}

Probab=98.65  E-value=6.5e-09  Score=83.06  Aligned_cols=59  Identities=27%  Similarity=0.591  Sum_probs=48.1

Q ss_pred             CCcccccccccCcCCCCC-CCCCCCcchhhhccccccCCCCCCCCCCCCcccccccccccCCCCCCCCCCCCCCC
Q 020994          153 DQPDCRYYMNTGTCKYGA-DCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAG  226 (319)
Q Consensus       153 gq~lCryF~ktG~CKfG~-~CrFsH~~~~~~~~~~~~ls~~glP~r~~~~~C~~y~r~G~CkfG~~CkF~Hp~~~  226 (319)
                      +.++|+.|++ |.|+.|+ .|+|+|+.+....           . .-...+|..|++ |.|..+ .|+|.|+...
T Consensus        16 ~~~VCrdFlr-G~C~r~d~~CrfsH~~~~~~v-----------~-~~~~~vC~dflk-G~C~r~-~Cky~H~~~h   75 (89)
T 2rpp_A           16 TLEVCRQFQR-GTCSRSDEECKFAHPPKSCQV-----------E-NGRVIACFDSLK-GRCSRE-NCKYLHPPTH   75 (89)
T ss_dssp             EECBCHHHHH-TCCCCCTTTSSSBCCCSSSCC-----------B-TTBEEBCHHHHH-TCCCCT-TCCSBCCCHH
T ss_pred             hhhhchHHhc-CCCCCCCCCCCCcCCCccccc-----------c-CCceeeehhhhh-CcCCCC-CcceecCHHH
Confidence            3579999999 9999998 9999998865311           0 123689999999 999998 9999999753

>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}

Probab=98.41  E-value=8.4e-08  Score=73.39  Aligned_cols=26  Identities=35%  Similarity=0.787  Sum_probs=23.5

Q ss_pred             CCCCCCcccccccCCCCCCCCCccCCC
Q 020994            2 RQDEKSCPYYMRTGSCKFGVACKFHHP   28 (319)
Q Consensus         2 R~~e~~C~~y~~tg~C~fG~~Ckf~Hp   28 (319)
                      +.....|.|||+ |.|+.|++|+|.|.
T Consensus        13 ~~k~~vCk~fl~-G~C~~G~~C~fsH~   38 (72)
T 2rhk_C           13 GEKTVVCKHWLR-GLCKKGDQCEFLHE   38 (72)
T ss_dssp             CCCCSBCHHHHT-TCCCCGGGSSSBCS
T ss_pred             CCcCeeCHHHhc-CCCCCCCCCCCccc
Confidence            356789999999 99999999999997

>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A

Probab=97.91  E-value=4.8e-06  Score=62.96  Aligned_cols=26  Identities=31%  Similarity=0.843  Sum_probs=23.1

Q ss_pred             CcccccccccCcCCCCCCCCCCCcchhh
Q 020994          154 QPDCRYYMNTGTCKYGADCKFHHPKERI  181 (319)
Q Consensus       154 q~lCryF~ktG~CKfG~~CrFsH~~~~~  181 (319)
                      .++|++|++ |.|.+| +|+|.|....+
T Consensus        42 ~~vC~~flk-G~C~r~-~C~y~H~~~~L   67 (70)
T 3d2q_A           42 VTVCMDYIK-GRCSRE-KCKYFHPPAHL   67 (70)
T ss_dssp             EEBCHHHHT-TCCCCT-TCCSBCCCHHH
T ss_pred             ceeccccCc-CCCCCC-CcCeeCCHHHH
Confidence            358999999 999999 99999988765

>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.89  E-value=3.7e-06  Score=64.53  Aligned_cols=30  Identities=40%  Similarity=0.787  Sum_probs=26.7

Q ss_pred             CCcccccccccCcCCCCCCCCCCCcchhhhc
Q 020994          153 DQPDCRYYMNTGTCKYGADCKFHHPKERIAQ  183 (319)
Q Consensus       153 gq~lCryF~ktG~CKfG~~CrFsH~~~~~~~  183 (319)
                      +..+|++|++ |.|+||++|.|+|+.++++.
T Consensus        19 k~~LC~~~~~-G~C~~G~~C~FAHG~~ELr~   48 (69)
T 2d9m_A           19 YFSICDRYMN-GTCPEGNSCKFAHGNAELHE   48 (69)
T ss_dssp             CCSBCHHHHH-SCCSSCSSCSSBSSHHHHHH
T ss_pred             CcccCcccCc-CCCCCCCccCCcCCHHHHhh
Confidence            4589999965 99999999999999999865

>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.84  E-value=3e-06  Score=68.43  Aligned_cols=25  Identities=32%  Similarity=0.877  Sum_probs=22.6

Q ss_pred             cccccccccCcCCCCCCCCCCCcchhh
Q 020994          155 PDCRYYMNTGTCKYGADCKFHHPKERI  181 (319)
Q Consensus       155 ~lCryF~ktG~CKfG~~CrFsH~~~~~  181 (319)
                      .+|++|++ |.|.+| +|+|.|....+
T Consensus        57 ~vC~~flk-G~C~r~-~C~y~H~~~~l   81 (98)
T 2e5s_A           57 TVCMDYIK-GRCMRE-KCKYFHPPAHL   81 (98)
T ss_dssp             EBCHHHHH-TCCCCT-TCCSBCCCHHH
T ss_pred             ccchhhcc-CCCCCC-CcCccCChHHH
Confidence            48999999 999999 99999988765

>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}

Probab=97.55  E-value=4.4e-05  Score=59.98  Aligned_cols=25  Identities=28%  Similarity=0.743  Sum_probs=22.2

Q ss_pred             cccccccccCcCCCCCCCCCCCcchhh
Q 020994          155 PDCRYYMNTGTCKYGADCKFHHPKERI  181 (319)
Q Consensus       155 ~lCryF~ktG~CKfG~~CrFsH~~~~~  181 (319)
                      .+|.+|++ |.|..+ +|+|.|+...+
T Consensus        44 ~vC~dflk-G~C~r~-~C~y~H~~~~l   68 (83)
T 3d2n_A           44 IACFDSLK-GRCSRE-NCKYLHPPPHL   68 (83)
T ss_dssp             ECCHHHHT-TCCCCS-SCSSCCCCHHH
T ss_pred             eehhHhhh-ccccCC-CcceeCChHHH
Confidence            47999999 999999 89999987655

>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}

Probab=97.33  E-value=7.2e-05  Score=68.83  Aligned_cols=28  Identities=21%  Similarity=0.422  Sum_probs=22.4

Q ss_pred             CCcccccccccCcCC----CCCCCCCCCcchhh
Q 020994          153 DQPDCRYYMNTGTCK----YGADCKFHHPKERI  181 (319)
Q Consensus       153 gq~lCryF~ktG~CK----fG~~CrFsH~~~~~  181 (319)
                      .-.+|++|+. |.|+    .+..|||+|+....
T Consensus        88 ~LHLCK~~l~-G~C~~~~~~~~~Ck~SHdi~s~  119 (229)
T 3u9g_A           88 SLHLCKLNLL-GRCHYAQSQRNLCKYSHDVLSE  119 (229)
T ss_dssp             SBCCCHHHHT-TCCGGGTCCSSCCSSCSCTTCH
T ss_pred             ceeechhhhc-CcCCcccCCCCCcccccccCch
Confidence            3579999998 9993    35789999998654

>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}

Probab=97.15  E-value=0.00022  Score=65.61  Aligned_cols=43  Identities=28%  Similarity=0.685  Sum_probs=37.1

Q ss_pred             ccccccccc----CcCCCCCCCCCCCcchhhhccccccCCCCCCCCCCCCcccccccccccCCCCCCCCCCCCCC
Q 020994          155 PDCRYYMNT----GTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYA  225 (319)
Q Consensus       155 ~lCryF~kt----G~CKfG~~CrFsH~~~~~~~~~~~~ls~~glP~r~~~~~C~~y~r~G~CkfG~~CkF~Hp~~  225 (319)
                      ++|.+| +.    |.|+++++|...|                         +|++|++ |.|+| .+||..|...
T Consensus       152 eiC~~Y-kG~g~~g~C~~~~~C~kLH-------------------------IC~~Fl~-G~C~f-~~CkRsH~~~  198 (229)
T 3u9g_A          152 EICKSY-KGEGRKQTCGQPQPCERLH-------------------------ICEHFTR-GNCSY-LNCLRSHNLM  198 (229)
T ss_dssp             CBCTTC-CCSSSCCSCSSSSCCCSBC-------------------------SCHHHHT-TCCCC-SSCSSCCCTT
T ss_pred             hHHHHh-CCCCCCCcCCCCCCCccee-------------------------ccchhhc-CCcCC-CCccCccCcc
Confidence            489999 72    5799999887666                         8999999 99999 8999999974

>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.02  E-value=5.9e-05  Score=57.85  Aligned_cols=28  Identities=36%  Similarity=0.723  Sum_probs=24.0

Q ss_pred             CCcccccccccccCCCCCCCCCCCCCCCC
Q 020994          199 GQAICSNYSMYGICKFGPTCRFDHPYAGY  227 (319)
Q Consensus       199 ~~~~C~~y~r~G~CkfG~~CkF~Hp~~~l  227 (319)
                      +..+|++|.. |.|+||++|.|+|...+|
T Consensus        19 k~~LC~~~~~-G~C~~G~~C~FAHG~~EL   46 (69)
T 2d9m_A           19 YFSICDRYMN-GTCPEGNSCKFAHGNAEL   46 (69)
T ss_dssp             CCSBCHHHHH-SCCSSCSSCSSBSSHHHH
T ss_pred             CcccCcccCc-CCCCCCCccCCcCCHHHH
Confidence            3589999955 999999999999987654

>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1

Probab=96.53  E-value=0.00085  Score=48.44  Aligned_cols=28  Identities=43%  Similarity=1.028  Sum_probs=25.9

Q ss_pred             CCcccccccccccCCCCCCCCCCCCCCC
Q 020994          199 GQAICSNYSMYGICKFGPTCRFDHPYAG  226 (319)
Q Consensus       199 ~~~~C~~y~r~G~CkfG~~CkF~Hp~~~  226 (319)
                      .+.+|..|..+|+|+.|.+|.|.|....
T Consensus        19 ~~~iC~~FSayGwCp~G~~Cp~SHDiDl   46 (50)
T 2fc6_A           19 PTSICDNFSAYGWCPLGPQCPQSHDISG   46 (50)
T ss_dssp             CSCBCSHHHHTCCCTTGGGCSSBCCCCC
T ss_pred             ccchhhhccccccCCCCCCCCccccCCC
Confidence            5789999999999999999999999864

>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1

Probab=95.95  E-value=0.0019  Score=46.67  Aligned_cols=28  Identities=21%  Similarity=0.470  Sum_probs=26.0

Q ss_pred             CCCcccccccccCcCCCCCCCCCCCcch
Q 020994          152 PDQPDCRYYMNTGTCKYGADCKFHHPKE  179 (319)
Q Consensus       152 pgq~lCryF~ktG~CKfG~~CrFsH~~~  179 (319)
                      .++.+|+.|...|.|++|.+|.++|+.+
T Consensus        18 ~~~~iC~~FSayGwCp~G~~Cp~SHDiD   45 (50)
T 2fc6_A           18 HPTSICDNFSAYGWCPLGPQCPQSHDIS   45 (50)
T ss_dssp             CCSCBCSHHHHTCCCTTGGGCSSBCCCC
T ss_pred             cccchhhhccccccCCCCCCCCccccCC
Confidence            4678999999999999999999999886

>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}

Probab=95.37  E-value=0.0065  Score=48.28  Aligned_cols=26  Identities=27%  Similarity=0.801  Sum_probs=23.8

Q ss_pred             CcccccccccccCCCCC-CCCCCCCCCC
Q 020994          200 QAICSNYSMYGICKFGP-TCRFDHPYAG  226 (319)
Q Consensus       200 ~~~C~~y~r~G~CkfG~-~CkF~Hp~~~  226 (319)
                      ..+|+.|++ |.|+.|+ .|+|.|+...
T Consensus        17 ~~VCrdFlr-G~C~r~d~~CrfsH~~~~   43 (89)
T 2rpp_A           17 LEVCRQFQR-GTCSRSDEECKFAHPPKS   43 (89)
T ss_dssp             ECBCHHHHH-TCCCCCTTTSSSBCCCSS
T ss_pred             hhhchHHhc-CCCCCCCCCCCCcCCCcc
Confidence            569999999 9999998 9999999864

>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}

Probab=93.98  E-value=0.0042  Score=48.68  Aligned_cols=22  Identities=23%  Similarity=0.815  Sum_probs=18.6

Q ss_pred             CcccccccccCcCCCCCCCCCCCcch
Q 020994          154 QPDCRYYMNTGTCKYGADCKFHHPKE  179 (319)
Q Consensus       154 q~lCryF~ktG~CKfG~~CrFsH~~~  179 (319)
                      .+.|+||..   |+. ..|.|.|+..
T Consensus         9 ~e~CKf~~~---Ctn-~~C~f~Hp~~   30 (80)
T 2lhn_A            9 LEQCKFGTH---CTN-KRCKYRHARS   30 (80)
Confidence            357999998   999 9999999763

>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A

Probab=93.90  E-value=0.014  Score=53.53  Aligned_cols=25  Identities=24%  Similarity=0.685  Sum_probs=22.5

Q ss_pred             CCcccccccccCcCCCCCCCCCCCcc
Q 020994          153 DQPDCRYYMNTGTCKYGADCKFHHPK  178 (319)
Q Consensus       153 gq~lCryF~ktG~CKfG~~CrFsH~~  178 (319)
                      ...+|-||.+ |.|+.|+.|.|.|..
T Consensus        69 ~~~~C~ffak-G~C~~G~~C~y~H~l   93 (240)
T 3u1l_A           69 QLFFCLFFAK-GMCCLGPKCEYLHHI   93 (240)
T ss_dssp             CCSBCHHHHT-TCCSCGGGCSSBBSC
T ss_pred             CCeEcCcccc-CCCCCCCCCCccCCC
Confidence            4569999999 999999999999964

>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}

Probab=92.59  E-value=0.013  Score=45.83  Aligned_cols=43  Identities=37%  Similarity=0.602  Sum_probs=32.5

Q ss_pred             cccccccccCcCCCCCCCCCCCcchhhhccccccCCCCCCCCCCCCcccccccccccCCCCCCCCCCCCCCC
Q 020994          155 PDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAG  226 (319)
Q Consensus       155 ~lCryF~ktG~CKfG~~CrFsH~~~~~~~~~~~~ls~~glP~r~~~~~C~~y~r~G~CkfG~~CkF~Hp~~~  226 (319)
                      ..|+|+..   |+. .+|.|.|+.                     ...|+|+.   .|+. ..|.|.|+...
T Consensus        32 ~~Cr~g~~---C~~-~~C~f~HP~---------------------~~~Crf~~---~C~n-~~C~F~Hp~g~   74 (80)
T 2lhn_A           32 IMCREGAN---CTR-IDCLFGHPI---------------------NEDCRFGV---NCKN-IYCLFRHPPGR   74 (80)
Confidence            36888776   887 679999962                     25688765   5887 89999999654

>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A

Probab=92.06  E-value=0.042  Score=50.33  Aligned_cols=28  Identities=25%  Similarity=0.725  Sum_probs=24.9

Q ss_pred             CCCCcccccccCCCCCCCCCccCCCCCCC
Q 020994            4 DEKSCPYYMRTGSCKFGVACKFHHPQPSS   32 (319)
Q Consensus         4 ~e~~C~~y~~tg~C~fG~~Ckf~Hp~~~~   32 (319)
                      ...-|.||.| |.|+.|+.|.|.|-.|..
T Consensus        69 ~~~~C~ffak-G~C~~G~~C~y~H~lPt~   96 (240)
T 3u1l_A           69 QLFFCLFFAK-GMCCLGPKCEYLHHIPDE   96 (240)
T ss_dssp             CCSBCHHHHT-TCCSCGGGCSSBBSCCCH
T ss_pred             CCeEcCcccc-CCCCCCCCCCccCCCCCc
Confidence            3458999999 999999999999998874

>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens}

Probab=80.46  E-value=0.33  Score=44.41  Aligned_cols=25  Identities=36%  Similarity=0.998  Sum_probs=0.0

Q ss_pred             CCcccccccccCcCCCCCCCCCCCcchh
Q 020994          153 DQPDCRYYMNTGTCKYGADCKFHHPKER  180 (319)
Q Consensus       153 gq~lCryF~ktG~CKfG~~CrFsH~~~~  180 (319)
                      +...|.|=.|   |.||.+|||.|++..
T Consensus       191 ~~~~~~~~~~---~~~~~~~~~~~~~~~  215 (223)
T 3v33_A          191 RKQPCPYGRK---CTYGIKCRFFHPERP  215 (223)
T ss_dssp             ----------------------------
T ss_pred             CCCCCCCCcc---cccCCcceecCCccC
Confidence            4668999776   999999999998743

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	319
d1rgoa1	36	g.66.1.1 (A:151-186) Butyrate response factor 2 (T	5e-05
d1rgoa1	36	g.66.1.1 (A:151-186) Butyrate response factor 2 (T	0.002
d1rgoa1	36	g.66.1.1 (A:151-186) Butyrate response factor 2 (T	0.003
d1rgoa2	34	g.66.1.1 (A:187-220) Butyrate response factor 2 (T	8e-05
d1rgoa2	34	g.66.1.1 (A:187-220) Butyrate response factor 2 (T	0.004
d1m9oa_	40	g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475	1e-04

>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (88), Expect = 5e-05
 Identities = 11/23 (47%), Positives = 14/23 (60%)

Query: 157 CRYYMNTGTCKYGADCKFHHPKE 179
           CR +  +GTCKYG  C+F H   
Sbjct: 9   CRPFEESGTCKYGEKCQFAHGFH 31

>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.1 bits (76), Expect = 0.002
 Identities = 8/21 (38%), Positives = 12/21 (57%)

Query: 202 ICSNYSMYGICKFGPTCRFDH 222
           +C  +   G CK+G  C+F H
Sbjct: 8   LCRPFEESGTCKYGEKCQFAH 28

>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.8 bits (75), Expect = 0.003
 Identities = 8/20 (40%), Positives = 13/20 (65%)

Query: 8  CPYYMRTGSCKFGVACKFHH 27
          C  +  +G+CK+G  C+F H
Sbjct: 9  CRPFEESGTCKYGEKCQFAH 28

>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 34

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (86), Expect = 8e-05
 Identities = 9/23 (39%), Positives = 11/23 (47%)

Query: 157 CRYYMNTGTCKYGADCKFHHPKE 179
           CR +   G C YG  C F H  +
Sbjct: 11  CRTFHTIGFCPYGPRCHFIHNAD 33

>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 34

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.3 bits (74), Expect = 0.004
 Identities = 8/21 (38%), Positives = 11/21 (52%)

Query: 202 ICSNYSMYGICKFGPTCRFDH 222
           +C  +   G C +GP C F H
Sbjct: 10  LCRTFHTIGFCPYGPRCHFIH 30

>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]} Length = 40

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Tristetraproline (ttp, tis11, nup475)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.6 bits (85), Expect = 1e-04
 Identities = 11/23 (47%), Positives = 14/23 (60%)

Query: 157 CRYYMNTGTCKYGADCKFHHPKE 179
           CR Y  +G C+YGA C+F H   
Sbjct: 12  CRTYSESGRCRYGAKCQFAHGLG 34

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	319
d1m9oa_	40	Tristetraproline (ttp, tis11, nup475) {Mouse (Mus	98.65
d1rgoa1	36	Butyrate response factor 2 (Tis11D) {Human (Homo s	98.55
d1rgoa2	34	Butyrate response factor 2 (Tis11D) {Human (Homo s	98.47
d1m9oa_	40	Tristetraproline (ttp, tis11, nup475) {Mouse (Mus	98.34
d1rgoa1	36	Butyrate response factor 2 (Tis11D) {Human (Homo s	98.26
d1rgoa2	34	Butyrate response factor 2 (Tis11D) {Human (Homo s	98.22
d2cqea2	29	Zinc finger CCCH domain-containing protein C19orf7	97.32
d2cqea2	29	Zinc finger CCCH domain-containing protein C19orf7	96.96
d2cqea1	56	Zinc finger CCCH domain-containing protein C19orf7	96.02
d2cqea1	56	Zinc finger CCCH domain-containing protein C19orf7	95.02
d2fc6a1	37	Target of EGR1 protein 1, TOE1 {Human (Homo sapien	93.12
d2fc6a1	37	Target of EGR1 protein 1, TOE1 {Human (Homo sapien	83.4

>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Tristetraproline (ttp, tis11, nup475)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.65  E-value=6.6e-09  Score=70.26  Aligned_cols=35  Identities=37%  Similarity=0.811  Sum_probs=31.8

Q ss_pred             CCCCCCcccccccccCcCCCCCCCCCCCcchhhhc
Q 020994          149 PERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQ  183 (319)
Q Consensus       149 Perpgq~lCryF~ktG~CKfG~~CrFsH~~~~~~~  183 (319)
                      ..+.|+.+|++|.++|.|.+|++|+|+|+.++++.
T Consensus         4 ~~~yKT~lC~~~~~~g~C~~G~~C~FAHg~~ELr~   38 (40)
T d1m9oa_           4 SSRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQ   38 (40)
T ss_dssp             SSCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGG
T ss_pred             CCccccccChhhhcCCcCCCCCCCCCCCCHHHhcC
Confidence            56789999999999999999999999999998864

>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=5.3e-09  Score=69.27  Aligned_cols=33  Identities=36%  Similarity=0.789  Sum_probs=30.0

Q ss_pred             CCCCCcccccccccCcCCCCCCCCCCCcchhhh
Q 020994          150 ERPDQPDCRYYMNTGTCKYGADCKFHHPKERIA  182 (319)
Q Consensus       150 erpgq~lCryF~ktG~CKfG~~CrFsH~~~~~~  182 (319)
                      .+.|+.+|++|..+|.|.+|++|.|+|+.++++
T Consensus         2 ~kyKT~lC~~~~~~g~C~~G~~C~FAHg~~ELr   34 (36)
T d1rgoa1           2 TRYKTELCRPFEESGTCKYGEKCQFAHGFHELR   34 (36)
T ss_dssp             TTTTSSBCHHHHHHSCCTTGGGCSSBSSGGGCC
T ss_pred             CCcchhhCcchhcCCcCCCCCcCCCcCCHHHcc
Confidence            367899999999889999999999999999875

>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=9.6e-09  Score=67.28  Aligned_cols=30  Identities=30%  Similarity=0.755  Sum_probs=27.7

Q ss_pred             CCCCcccccccccCcCCCCCCCCCCCcchh
Q 020994          151 RPDQPDCRYYMNTGTCKYGADCKFHHPKER  180 (319)
Q Consensus       151 rpgq~lCryF~ktG~CKfG~~CrFsH~~~~  180 (319)
                      +.|+.+|++|.++|.|.||++|.|+|+.++
T Consensus         5 kyKT~lC~~f~~~g~C~yG~~C~FaHg~~E   34 (34)
T d1rgoa2           5 KYKTELCRTFHTIGFCPYGPRCHFIHNADE   34 (34)
T ss_dssp             TTTCSBCHHHHHHSCCTTGGGCSSBCCSCC
T ss_pred             CccchhccccCCCCcCCCCCcccCcCCCCC
Confidence            689999999999999999999999998753

>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Tristetraproline (ttp, tis11, nup475)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.34  E-value=1.3e-07  Score=63.75  Aligned_cols=33  Identities=33%  Similarity=0.776  Sum_probs=29.8

Q ss_pred             CCCCCcccccccccccCCCCCCCCCCCCCCCCC
Q 020994          196 SRPGQAICSNYSMYGICKFGPTCRFDHPYAGYP  228 (319)
Q Consensus       196 ~r~~~~~C~~y~r~G~CkfG~~CkF~Hp~~~l~  228 (319)
                      .+.++++|++|.+.|.|+||++|.|+|...+|.
T Consensus         5 ~~yKT~lC~~~~~~g~C~~G~~C~FAHg~~ELr   37 (40)
T d1m9oa_           5 SRYKTELCRTYSESGRCRYGAKCQFAHGLGELR   37 (40)
T ss_dssp             SCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGG
T ss_pred             CccccccChhhhcCCcCCCCCCCCCCCCHHHhc
Confidence            467899999999989999999999999988764

>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=5.6e-08  Score=64.21  Aligned_cols=32  Identities=28%  Similarity=0.769  Sum_probs=29.1

Q ss_pred             CCCCcccccccccccCCCCCCCCCCCCCCCCC
Q 020994          197 RPGQAICSNYSMYGICKFGPTCRFDHPYAGYP  228 (319)
Q Consensus       197 r~~~~~C~~y~r~G~CkfG~~CkF~Hp~~~l~  228 (319)
                      +.++++|++|.++|.|+||++|.|+|...+|.
T Consensus         3 kyKT~lC~~~~~~g~C~~G~~C~FAHg~~ELr   34 (36)
T d1rgoa1           3 RYKTELCRPFEESGTCKYGEKCQFAHGFHELR   34 (36)
T ss_dssp             TTTSSBCHHHHHHSCCTTGGGCSSBSSGGGCC
T ss_pred             CcchhhCcchhcCCcCCCCCcCCCcCCHHHcc
Confidence            57899999999889999999999999988764

>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=1e-07  Score=62.26  Aligned_cols=29  Identities=28%  Similarity=0.829  Sum_probs=26.8

Q ss_pred             CCCCcccccccccccCCCCCCCCCCCCCC
Q 020994          197 RPGQAICSNYSMYGICKFGPTCRFDHPYA  225 (319)
Q Consensus       197 r~~~~~C~~y~r~G~CkfG~~CkF~Hp~~  225 (319)
                      +.++.+|++|.+.|.|+||++|.|+|...
T Consensus         5 kyKT~lC~~f~~~g~C~yG~~C~FaHg~~   33 (34)
T d1rgoa2           5 KYKTELCRTFHTIGFCPYGPRCHFIHNAD   33 (34)
T ss_dssp             TTTCSBCHHHHHHSCCTTGGGCSSBCCSC
T ss_pred             CccchhccccCCCCcCCCCCcccCcCCCC
Confidence            46899999999999999999999999865

>d2cqea2 g.66.1.1 (A:429-457) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.32  E-value=5.5e-05  Score=47.11  Aligned_cols=24  Identities=25%  Similarity=0.876  Sum_probs=22.0

Q ss_pred             CCcccccccccCcCCCCCCCCCCCc
Q 020994          153 DQPDCRYYMNTGTCKYGADCKFHHP  177 (319)
Q Consensus       153 gq~lCryF~ktG~CKfG~~CrFsH~  177 (319)
                      ++.+|+||+. |.|..|++|.|-|.
T Consensus         5 kkelCKfYvq-GyCtrgenC~ymH~   28 (29)
T d2cqea2           5 KRELCKFYIT-GFCARAENCPYMHG   28 (29)
T ss_dssp             CCSBCTTTTT-TCCSCSTTCSSBSS
T ss_pred             hhhhhhhhee-eeecCCcCcccccC
Confidence            4679999998 99999999999996

>d2cqea2 g.66.1.1 (A:429-457) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.96  E-value=0.00026  Score=44.01  Aligned_cols=24  Identities=25%  Similarity=0.697  Sum_probs=22.2

Q ss_pred             CCcccccccccccCCCCCCCCCCCC
Q 020994          199 GQAICSNYSMYGICKFGPTCRFDHP  223 (319)
Q Consensus       199 ~~~~C~~y~r~G~CkfG~~CkF~Hp  223 (319)
                      +..+|+||.+ |+|..|+.|.|.|.
T Consensus         5 kkelCKfYvq-GyCtrgenC~ymH~   28 (29)
T d2cqea2           5 KRELCKFYIT-GFCARAENCPYMHG   28 (29)
T ss_dssp             CCSBCTTTTT-TCCSCSTTCSSBSS
T ss_pred             hhhhhhhhee-eeecCCcCcccccC
Confidence            4579999999 99999999999996

>d2cqea1 g.66.1.1 (A:458-513) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.02  E-value=0.0009  Score=47.56  Aligned_cols=22  Identities=45%  Similarity=1.079  Sum_probs=20.1

Q ss_pred             ccccccccCcCCCCCCCCCCCc
Q 020994          156 DCRYYMNTGTCKYGADCKFHHP  177 (319)
Q Consensus       156 lCryF~ktG~CKfG~~CrFsH~  177 (319)
                      .|+||-..+.|..|++|+|+|.
T Consensus         2 PCK~yHtg~kCy~gd~C~FSH~   23 (56)
T d2cqea1           2 PCKLYHTTGNCINGDDCMFSHD   23 (56)
T ss_dssp             BCSHHHHTSCCSSCTTCSSBCC
T ss_pred             CcceeecCCcccCCCcccccCC
Confidence            4999998779999999999995

>d2cqea1 g.66.1.1 (A:458-513) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.02  E-value=0.004  Score=44.13  Aligned_cols=23  Identities=35%  Similarity=0.676  Sum_probs=20.7

Q ss_pred             ccccccccccCCCCCCCCCCCCC
Q 020994          202 ICSNYSMYGICKFGPTCRFDHPY  224 (319)
Q Consensus       202 ~C~~y~r~G~CkfG~~CkF~Hp~  224 (319)
                      +|+||...+.|..|+.|+|.|..
T Consensus         2 PCK~yHtg~kCy~gd~C~FSH~p   24 (56)
T d2cqea1           2 PCKLYHTTGNCINGDDCMFSHDP   24 (56)
T ss_dssp             BCSHHHHTSCCSSCTTCSSBCCC
T ss_pred             CcceeecCCcccCCCcccccCCc
Confidence            69999987899999999999954

>d2fc6a1 g.66.1.1 (A:8-44) Target of EGR1 protein 1, TOE1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Target of EGR1 protein 1, TOE1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.12  E-value=0.012  Score=38.26  Aligned_cols=26  Identities=42%  Similarity=1.008  Sum_probs=23.6

Q ss_pred             CCcccccccccccCCCCCCCCCCCCC
Q 020994          199 GQAICSNYSMYGICKFGPTCRFDHPY  224 (319)
Q Consensus       199 ~~~~C~~y~r~G~CkfG~~CkF~Hp~  224 (319)
                      .+.+|..|..||+|+.|..|...|.+
T Consensus        12 ~~~iC~~FsAyGWCP~G~qCp~SHdi   37 (37)
T d2fc6a1          12 PTSICDNFSAYGWCPLGPQCPQSHDI   37 (37)
T ss_dssp             CSCBCSHHHHTCCCTTGGGCSSBCCC
T ss_pred             ccchhhhhhhccccCCCCCCcccCcC
Confidence            46899999999999999999999964

>d2fc6a1 g.66.1.1 (A:8-44) Target of EGR1 protein 1, TOE1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Target of EGR1 protein 1, TOE1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.40  E-value=0.24  Score=31.83  Aligned_cols=27  Identities=22%  Similarity=0.485  Sum_probs=24.1

Q ss_pred             CCCcccccccccCcCCCCCCCCCCCcc
Q 020994          152 PDQPDCRYYMNTGTCKYGADCKFHHPK  178 (319)
Q Consensus       152 pgq~lCryF~ktG~CKfG~~CrFsH~~  178 (319)
                      -.+.+|..|...|.|..|.+|.-+|+.
T Consensus        11 ~~~~iC~~FsAyGWCP~G~qCp~SHdi   37 (37)
T d2fc6a1          11 HPTSICDNFSAYGWCPLGPQCPQSHDI   37 (37)
T ss_dssp             CCSCBCSHHHHTCCCTTGGGCSSBCCC
T ss_pred             CccchhhhhhhccccCCCCCCcccCcC
Confidence            346799999999999999999999973