Citrus Sinensis ID: 021040

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------32
Protein Sequence
MTSSTVMNYDIENDDSFTQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQVISLKLYSMHT
Secondary Structure (PSIPRED)
cccccccccccccccccccccccHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccEEEEEEccccccccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHcccEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccccEEEcccccccccccccccccEEEEEcHcHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccEEEEEcccccccccEEEEEHEEHEEEHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
mtsstvmnydienddsftqpvgRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFghfkiwhgAGSVLVAVSFSSvfggcmpcrilststlkvETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVStakthadleNQYRWIAYSSIFIGCCFVgiflsrteeprlkmglrgnshARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQVISLKLYSMHT
Flexible Loop (DISEMBL)
mtsstvmnydienddsftqpvGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQVISLKLYSMHT
Low Complexity Region (SEG)
MTSSTVMNYDIENDDSFTQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHgagsvlvavsfssvfggCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQVISLKLYSMHT
Disordered region (IsUnstruct)
**************DSFTQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQVISLKLY****
Disordered Region (DISOPRED)
************************SVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRT******************WAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQVISLKLYSMH*
Disordered Region (DISEMBL)
MTSSTVMNYDIENDDSFTQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQVISLKLYSMHT
Disordered Region (DISPRO)
**********IENDDSFTQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEE**********SHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQVISLKLYSMHT
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTSSTVMNYDIENDDSFTQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQVISLKLYSMHT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	318	2.2.26 [Sep-21-2011]
Q3U481	476	Major facilitator superfa	yes	no	0.943	0.630	0.327	2e-40
Q6NUT3	480	Major facilitator superfa	yes	no	0.915	0.606	0.317	2e-39
P94488	463	Uncharacterized symporter	yes	no	0.628	0.431	0.263	7e-06
P74168	544	Uncharacterized symporter	N/A	no	0.449	0.262	0.290	0.0006

>sp|Q3U481|MFS12_MOUSE Major facilitator superfamily domain-containing protein 12 OS=Mus musculus GN=Mfsd12 PE=2 SV=1

 Score =  166 bits (420), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 109/333 (32%), Positives = 174/333 (52%), Gaps = 33/333 (9%)

Query: 12  ENDDSFTQPVGRWSV---LYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLS 67
            +DD+   P    S+   L +  GH LND+ A  WFTYLLLFL  + G S RGA  ++L 
Sbjct: 4   PSDDAGPGPPRTLSLAARLSFAVGHFLNDLCAGMWFTYLLLFLHSVRGYSSRGAGLLLLL 63

Query: 68  GQIADGFATIFIGELIDRF-----GHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTL 122
           GQ+ADG  T  +G   DR      G  K WH AG+V V +SF  +F  C+ C     +  
Sbjct: 64  GQVADGLCTPLVGYEADRASCVRCGPRKAWHLAGTVCVLLSFPFIFSPCLGCG--EATPE 121

Query: 123 KVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAI 182
               + Y  F  +F  GWAATQ+AH+S++  +  +   +V LT+ R AFT+VAN+++Y  
Sbjct: 122 WAALLYYGPFIVVFQFGWAATQIAHLSLIPELVTSDHEKVELTALRYAFTVVANITVYGA 181

Query: 183 AFIVFSVS-TAKTHADLE--NQ--------YRWIAYSSIFIGCCFVGIFLSRTEEPRLKM 231
           A+++  +  +A    D+   +Q        +R +A   + +G  F  +F   T+E     
Sbjct: 182 AWLLLHLQGSAHGEQDISVGDQLGVQDVPVFRNLALLVVGVGAIFSLLFHLGTKEGHRSQ 241

Query: 232 --GLRGNSHARIS---------WAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVIND 280
             G   N H  +          W +W ++  +YQV ++YM TRL+VN+SQ Y+A Y+   
Sbjct: 242 HWGNEPNEHTPLVAPAAQPLLLWKHWLREPAFYQVGMLYMTTRLIVNLSQTYIAMYLTYS 301

Query: 281 LRMGQSAKALVPAIIYICSFIVSILLQVISLKL 313
           L + +   A +P ++Y+  F  S L++ ++ ++
Sbjct: 302 LSLPKKFIATIPLVMYLSGFFSSFLMKPVNRRI 334

Mus musculus (taxid: 10090)

>sp|Q6NUT3|MFS12_HUMAN Major facilitator superfamily domain-containing protein 12 OS=Homo sapiens GN=MFSD12 PE=2 SV=2

 Score =  163 bits (412), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 103/324 (31%), Positives = 169/324 (52%), Gaps = 33/324 (10%)

Query: 18  TQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFAT 76
            +P+   + L Y  GH LND+ A+ WFTYLLL+L  +   S RGA  ++L GQ+ADG  T
Sbjct: 14  PRPLSLVARLSYAVGHFLNDLCASMWFTYLLLYLHSVRAYSSRGAGLLLLLGQVADGLCT 73

Query: 77  IFIGELIDR-------FGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISY 129
             +G   DR       +G  K WH  G+V V +SF  +F  C+ C   + +      + Y
Sbjct: 74  PLVGYEADRAASCCARYGPRKAWHLVGTVCVLLSFPFIFSPCLGCG--AATPEWAALLYY 131

Query: 130 CVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSV 189
             F  IF  GWA+TQ++H+S++  +  N   +V LT+ R AFT+VAN+++Y  A+++  +
Sbjct: 132 GPFIVIFQFGWASTQISHLSLIPELVTNDHEKVELTALRYAFTVVANITVYGAAWLLLHL 191

Query: 190 ---STAKTHADLE--NQ--------YRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGN 236
              S  +   D+   +Q        +R ++   + +G  F  +F   T E R        
Sbjct: 192 QGSSRVEPTQDISISDQLGGQDVPVFRNLSLLVVGVGAVFSLLFHLGTRERRRPHAEEPG 251

Query: 237 SHARIS----------WAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQS 286
            H  +           W +W ++  +YQV ++YM TRL+VN+SQ Y+A Y+   L + + 
Sbjct: 252 EHTPLLAPATAQPLLLWKHWLREPAFYQVGILYMTTRLIVNLSQTYMAMYLTYSLHLPKK 311

Query: 287 AKALVPAIIYICSFIVSILLQVIS 310
             A +P ++Y+  F+ S L++ I+
Sbjct: 312 FIATIPLVMYLSGFLSSFLMKPIN 335

Homo sapiens (taxid: 9606)

>sp|P94488|YNAJ_BACSU Uncharacterized symporter YnaJ OS=Bacillus subtilis (strain 168) GN=ynaJ PE=3 SV=2

 Score = 51.6 bits (122), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 62/235 (26%), Positives = 99/235 (42%), Gaps = 35/235 (14%)

Query: 29  YGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELID--- 84
           Y SG    ++  A   TYLL F TD+ GLS   A  + L  +I D  A  FIG ++D   
Sbjct: 17  YASGDFACNLIYATVSTYLLFFYTDVFGLSAAAAGTMFLVVRIIDALADPFIGTIVDRTN 76

Query: 85  -RFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILST---STLKVETISYCVFAAIFNVGW 140
            RFG F+ +              +  G  P  IL+    +T     +   ++A I  VG 
Sbjct: 77  SRFGRFRPY--------------LLFGAFPFVILAILCFTTPDFSDMGKLIYAYITYVGL 122

Query: 141 AAT----QVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHA 196
           + T     V + ++ + +T N+   V +TS R  F   ANL    +AF V  ++   +  
Sbjct: 123 SLTYTTINVPYGALTSAMTRNNQEVVSITSVRMLF---ANLGGLVVAFFVPLLAAYLSDT 179

Query: 197 DLENQYRWIAYSSIF--IGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKK 249
                  W     I   IG C + IF  ++ + R+ +     S  +I +   F++
Sbjct: 180 SGNESLGWQLTMGILGMIGGCLL-IFCFKSTKERVTL---QKSEEKIKFTDIFEQ 230

Bacillus subtilis (strain 168) (taxid: 224308)

>sp|P74168|Y1374_SYNY3 Uncharacterized symporter sll1374 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll1374 PE=3 SV=1

 Score = 45.1 bits (105), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 70/155 (45%), Gaps = 12/155 (7%)

Query: 27  LYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELID- 84
           L YG+G     ITA     YLL FLTD+ G+    A +V++ G+I D      IG L D 
Sbjct: 16  LAYGAGDFGPAITANILVFYLLFFLTDVAGIPAALAGSVLMIGKIFDAINDPIIGLLSDR 75

Query: 85  ---RFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVE---TISYCVFAAIFNV 138
              R+G    W   G +  A+ +++ +   +P    S   L  +    I Y   A  FN+
Sbjct: 76  TRSRWGRRLPWMLGGMIPFALFYTAQW--LIPH--FSDDRLTNQWGLFIYYVAIAMAFNL 131

Query: 139 GWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTM 173
            +    + + ++   +T N   R  L S R AF++
Sbjct: 132 CYTTVNLPYTALTPELTQNYNERTRLNSFRFAFSI 166

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	318
356557090	452	PREDICTED: uncharacterized MFS-type tran	0.955	0.672	0.782	1e-142
255542273	454	conserved hypothetical protein [Ricinus	0.955	0.669	0.792	1e-141
224106589	442	predicted protein [Populus trichocarpa]	0.946	0.680	0.784	1e-139
356525698	452	PREDICTED: uncharacterized MFS-type tran	0.955	0.672	0.773	1e-139
357451101	453	MFS-type transporter, putative [Medicago	0.959	0.673	0.767	1e-138
255646539	452	unknown [Glycine max]	0.955	0.672	0.769	1e-138
224120942	457	predicted protein [Populus trichocarpa]	0.955	0.665	0.755	1e-134
359487445	453	PREDICTED: uncharacterized MFS-type tran	0.933	0.655	0.767	1e-134
145331127	462	major facilitator protein [Arabidopsis t	0.971	0.668	0.734	1e-134
297828147	461	hypothetical protein ARALYDRAFT_903845 [	0.968	0.668	0.747	1e-134

>gi|356557090|ref|XP_003546851.1| PREDICTED: uncharacterized MFS-type transporter C19orf28-like [Glycine max]

 Score =  509 bits (1310), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 238/304 (78%), Positives = 272/304 (89%)

Query: 7   MNYDIENDDSFTQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVML 66
           M   +E DD++T+ +GRW V YYG GHMLNDITAACWFTYLLLFLTDIGLSPR AAAVML
Sbjct: 1   MGTIVEADDTYTKILGRWPVFYYGMGHMLNDITAACWFTYLLLFLTDIGLSPRNAAAVML 60

Query: 67  SGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVET 126
           SGQ+ADGFATI +GELIDRFGHFKIWHGAGS+LVA+SFSSVFGGC+PC++ S+++   ET
Sbjct: 61  SGQVADGFATILVGELIDRFGHFKIWHGAGSLLVAISFSSVFGGCLPCKLFSSNSCTFET 120

Query: 127 ISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIV 186
           +SY VFAAIFN+GWAATQV+HMSMV+CITLNSTSRV L SCRNAFTMVANLSLYA+A IV
Sbjct: 121 VSYSVFAAIFNLGWAATQVSHMSMVSCITLNSTSRVALASCRNAFTMVANLSLYAVALIV 180

Query: 187 FSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYW 246
           FSV   KTH D+ENQYRWIAY SIFIGCCFVG+FL  T+EPRLK+G+ G  HARISW YW
Sbjct: 181 FSVINGKTHDDVENQYRWIAYFSIFIGCCFVGVFLLATKEPRLKLGVHGMVHARISWDYW 240

Query: 247 FKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILL 306
           FK+ILYYQVALVY+LTRLV+N+SQAYLAF+VINDL+M QSAKALVPA+IYICSF+VSI L
Sbjct: 241 FKRILYYQVALVYVLTRLVLNISQAYLAFFVINDLQMAQSAKALVPALIYICSFVVSIAL 300

Query: 307 QVIS 310
           Q I+
Sbjct: 301 QEIA 304

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542273|ref|XP_002512200.1| conserved hypothetical protein [Ricinus communis] gi|223548744|gb|EEF50234.1| conserved hypothetical protein [Ricinus communis]

 Score =  506 bits (1304), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 241/304 (79%), Positives = 269/304 (88%)

Query: 7   MNYDIENDDSFTQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVML 66
           M  DIE+D+S+ +PVGRW V YYG GHMLNDITAACWFTYLLLFLTDIGLSPR AA VML
Sbjct: 1   MGDDIEDDNSYPKPVGRWPVFYYGVGHMLNDITAACWFTYLLLFLTDIGLSPRDAATVML 60

Query: 67  SGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVET 126
           SGQIADGFATIF GELIDRFGHFK+WHGAGSVLVA+SFSSVFGGC PC+IL T++  +ET
Sbjct: 61  SGQIADGFATIFAGELIDRFGHFKVWHGAGSVLVAISFSSVFGGCFPCKILGTNSSTIET 120

Query: 127 ISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIV 186
           +SY +FAAIFNVGWAATQV+HMSMVNCI+LNSTSRVV+ SCRNAFTMVANLSLYAIA  +
Sbjct: 121 VSYSIFAAIFNVGWAATQVSHMSMVNCISLNSTSRVVMASCRNAFTMVANLSLYAIALTI 180

Query: 187 FSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYW 246
           F+VS A+THAD++NQYRWIAY SI  GCCFVGIF   T+EPRLK+ L   S ARISW YW
Sbjct: 181 FNVSKAETHADIQNQYRWIAYLSICFGCCFVGIFHLGTKEPRLKISLHEISCARISWTYW 240

Query: 247 FKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILL 306
           FKKILYYQV LVY+LTRLV NVSQAYLAFYVINDLRM QSAKALVPAIIYI SF++S+++
Sbjct: 241 FKKILYYQVGLVYVLTRLVQNVSQAYLAFYVINDLRMAQSAKALVPAIIYISSFVISVIM 300

Query: 307 QVIS 310
           Q IS
Sbjct: 301 QEIS 304

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224106589|ref|XP_002314218.1| predicted protein [Populus trichocarpa] gi|222850626|gb|EEE88173.1| predicted protein [Populus trichocarpa]

 Score =  501 bits (1290), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 236/301 (78%), Positives = 268/301 (89%)

Query: 7   MNYDIENDDSFTQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVML 66
           M  D+E+DDS  +PVGR SV YYG GHMLNDITAACWFTYLLLFLT+IGLSPR AA VML
Sbjct: 1   MVNDVEDDDSCPKPVGRSSVFYYGVGHMLNDITAACWFTYLLLFLTEIGLSPRDAAIVML 60

Query: 67  SGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVET 126
           +GQIADGFAT+F GELIDRFGHFKIWHGAGS+L A+SFSSVFGGC+PC+IL++S+  +ET
Sbjct: 61  AGQIADGFATVFAGELIDRFGHFKIWHGAGSILAAISFSSVFGGCLPCKILASSSPIIET 120

Query: 127 ISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIV 186
           ISY   AAIFNVGWAATQV+HMSMVNCI+LNSTSRVV+TSCRNAFTMVANLSLYA+A +V
Sbjct: 121 ISYSTSAAIFNVGWAATQVSHMSMVNCISLNSTSRVVMTSCRNAFTMVANLSLYAVALVV 180

Query: 187 FSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYW 246
           FS + A TH+D+ENQY WIAY+SIFIGCCFVGIF   T+EPRLK+ + G S+ARISWAYW
Sbjct: 181 FSTTKATTHSDIENQYHWIAYTSIFIGCCFVGIFHLGTKEPRLKIRVHGTSYARISWAYW 240

Query: 247 FKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILL 306
           FKK+LYYQV LVYMLTRL  NVSQAYLAFYVI D+RM +SAKALVPAIIYI SFIVSI++
Sbjct: 241 FKKVLYYQVGLVYMLTRLAQNVSQAYLAFYVIEDMRMAKSAKALVPAIIYISSFIVSIIM 300

Query: 307 Q 307
           Q
Sbjct: 301 Q 301

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356525698|ref|XP_003531460.1| PREDICTED: uncharacterized MFS-type transporter C19orf28-like [Glycine max]

 Score =  500 bits (1287), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 235/304 (77%), Positives = 270/304 (88%)

Query: 7   MNYDIENDDSFTQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVML 66
           M   +E D+++T+ +GRW V YYG GHMLNDITAACWFTYLLLFLTDIGLSPR AA VML
Sbjct: 1   MGTIVEADNTYTKILGRWPVFYYGMGHMLNDITAACWFTYLLLFLTDIGLSPRNAAVVML 60

Query: 67  SGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVET 126
           SGQ+ADGF TIF+GELIDRFGHFKIWHGAGS+LVA+SFSSVFGGC+PC++ S+++   ET
Sbjct: 61  SGQVADGFVTIFVGELIDRFGHFKIWHGAGSLLVAISFSSVFGGCLPCKLFSSNSGTFET 120

Query: 127 ISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIV 186
           +SY ++AAIFNVGWAATQV+HMSMV+CITLNSTSRV L SCRNAFTMVANLSLYA+A IV
Sbjct: 121 LSYSMYAAIFNVGWAATQVSHMSMVSCITLNSTSRVALASCRNAFTMVANLSLYAVALIV 180

Query: 187 FSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYW 246
           FSV   KTH D+ENQYRWIAY SIFIGCCFVG+F   T+EPRLK+G+ G  HARISW YW
Sbjct: 181 FSVINGKTHDDVENQYRWIAYLSIFIGCCFVGVFHLATKEPRLKVGVHGMVHARISWDYW 240

Query: 247 FKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILL 306
           FK+ILYYQVALVY+LTRLV+NVSQAYLAF+VINDL+M QSAKALVPA+IYICSF+VSI L
Sbjct: 241 FKRILYYQVALVYVLTRLVLNVSQAYLAFFVINDLQMAQSAKALVPALIYICSFVVSIAL 300

Query: 307 QVIS 310
           Q I+
Sbjct: 301 QEIA 304

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357451101|ref|XP_003595827.1| MFS-type transporter, putative [Medicago truncatula] gi|124360106|gb|ABN08122.1| C19orf28 protein, related [Medicago truncatula] gi|355484875|gb|AES66078.1| MFS-type transporter, putative [Medicago truncatula]

 Score =  498 bits (1282), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 234/305 (76%), Positives = 268/305 (87%)

Query: 6   VMNYDIENDDSFTQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVM 65
           +M   IE DD+FT+ +GR  + YYG GHMLNDIT+ACWFTYLLLFLTDIG SPR AA VM
Sbjct: 1   MMGTVIEEDDTFTKALGRGPIFYYGMGHMLNDITSACWFTYLLLFLTDIGFSPRNAAIVM 60

Query: 66  LSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVE 125
           LSGQ+AD FAT+F+GELIDRFGHFKIWHGAGS+LVA+SFSSVFGGC+PC I ++ ++  E
Sbjct: 61  LSGQVADAFATVFVGELIDRFGHFKIWHGAGSLLVAISFSSVFGGCLPCTIFTSDSITFE 120

Query: 126 TISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFI 185
           T+SY VFAAIFNVGWAATQV+HMSMV+CITLNSTSRV L SCRNAFTMVANLSLYAIA I
Sbjct: 121 TVSYSVFAAIFNVGWAATQVSHMSMVSCITLNSTSRVALASCRNAFTMVANLSLYAIALI 180

Query: 186 VFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAY 245
           VFSV   KT+A++ENQYRWIAY SIFIGCCFVGIFL  T+EPRL+M + G +  RISWAY
Sbjct: 181 VFSVVNGKTYANVENQYRWIAYVSIFIGCCFVGIFLLATKEPRLQMDVHGKARGRISWAY 240

Query: 246 WFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSIL 305
           WFK++LYYQVAL+Y+LTRL+VN+SQAYLAFYVINDL+M QSAKALVPAIIYI SFIVSI 
Sbjct: 241 WFKRVLYYQVALIYVLTRLIVNISQAYLAFYVINDLQMAQSAKALVPAIIYISSFIVSIA 300

Query: 306 LQVIS 310
           LQ I+
Sbjct: 301 LQEIA 305

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255646539|gb|ACU23744.1| unknown [Glycine max]

 Score =  498 bits (1281), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 234/304 (76%), Positives = 269/304 (88%)

Query: 7   MNYDIENDDSFTQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVML 66
           M   +E D+++T+ +GRW V YYG GHMLNDITAACWFTYLLLFLTDIGLSPR AA VML
Sbjct: 1   MGTIVEADNTYTKILGRWPVFYYGMGHMLNDITAACWFTYLLLFLTDIGLSPRNAAVVML 60

Query: 67  SGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVET 126
           SGQ+ADGF TIF+GELI RFGHFKIWHGAGS+LVA+SFSSVFGGC+PC++ S+++   ET
Sbjct: 61  SGQVADGFVTIFVGELIGRFGHFKIWHGAGSLLVAISFSSVFGGCLPCKLFSSNSGTFET 120

Query: 127 ISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIV 186
           +SY ++AAIFNVGWAATQV+HMSMV+CITLNSTSRV L SCRNAFTMVANLSLYA+A IV
Sbjct: 121 LSYSMYAAIFNVGWAATQVSHMSMVSCITLNSTSRVALASCRNAFTMVANLSLYAVALIV 180

Query: 187 FSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYW 246
           FSV   KTH D+ENQYRWIAY SIFIGCCFVG+F   T+EPRLK+G+ G  HARISW YW
Sbjct: 181 FSVIIGKTHDDVENQYRWIAYLSIFIGCCFVGVFRLATKEPRLKVGVHGMVHARISWGYW 240

Query: 247 FKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILL 306
           FK+ILYYQVALVY+LTRLV+NVSQAYLAF+VINDL+M QSAKALVPA+IYICSF+VSI L
Sbjct: 241 FKRILYYQVALVYVLTRLVLNVSQAYLAFFVINDLQMAQSAKALVPALIYICSFVVSIAL 300

Query: 307 QVIS 310
           Q I+
Sbjct: 301 QEIA 304

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224120942|ref|XP_002330864.1| predicted protein [Populus trichocarpa] gi|222872686|gb|EEF09817.1| predicted protein [Populus trichocarpa]

 Score =  485 bits (1248), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 232/307 (75%), Positives = 269/307 (87%), Gaps = 3/307 (0%)

Query: 7   MNYDIENDD---SFTQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAA 63
           M  D+ENDD   S+ +PVGR  V YYG GHMLNDITAACWFTYLLLFLT+IGLSPR AA 
Sbjct: 1   MRNDVENDDDDDSYPKPVGRRCVFYYGVGHMLNDITAACWFTYLLLFLTEIGLSPRDAAI 60

Query: 64  VMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLK 123
            ML+GQIADGFAT+F GELIDRFGHFK+WHGAGS+LVA+SFSSVFGGC+PC+IL++ +  
Sbjct: 61  AMLAGQIADGFATVFAGELIDRFGHFKVWHGAGSILVAISFSSVFGGCLPCKILASCSSV 120

Query: 124 VETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIA 183
           VET+SY   AAIFNVGWAATQV+HMSMVNCI+LNS+SRVV+TSCRNAFTMVANLSLYA+A
Sbjct: 121 VETVSYSTSAAIFNVGWAATQVSHMSMVNCISLNSSSRVVMTSCRNAFTMVANLSLYAVA 180

Query: 184 FIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISW 243
            +VFS   A THAD+ENQYRWIAY+SIFIGCCFVGIF   T+EPRLK+ + G S+ARISW
Sbjct: 181 LVVFSSIKATTHADIENQYRWIAYTSIFIGCCFVGIFHLGTKEPRLKICVHGTSNARISW 240

Query: 244 AYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVS 303
           AYWFKK+LYYQV LVYMLTRLV NVSQ YLAFYV++DL+M +SAKALVPAIIY+ SF VS
Sbjct: 241 AYWFKKVLYYQVGLVYMLTRLVQNVSQVYLAFYVMDDLQMAKSAKALVPAIIYMSSFFVS 300

Query: 304 ILLQVIS 310
           +++Q +S
Sbjct: 301 VIMQEMS 307

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359487445|ref|XP_002270525.2| PREDICTED: uncharacterized MFS-type transporter C19orf28-like [Vitis vinifera] gi|297741204|emb|CBI32155.3| unnamed protein product [Vitis vinifera]

 Score =  485 bits (1248), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 228/297 (76%), Positives = 262/297 (88%)

Query: 11  IENDDSFTQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQI 70
           +E+DD+FT+P+GR +V YYG GHMLNDIT+ACWFTYLL+FLTDIGL  R AA VMLSGQI
Sbjct: 5   MEDDDAFTKPLGRQAVFYYGVGHMLNDITSACWFTYLLVFLTDIGLPSRDAATVMLSGQI 64

Query: 71  ADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYC 130
           ADGF TIF GELIDRFGHFKIWHGAGS+LVAVSFSSVFGGC+PC+I  +++  ++T+ Y 
Sbjct: 65  ADGFTTIFAGELIDRFGHFKIWHGAGSILVAVSFSSVFGGCLPCKIFGSNSSTLQTVGYS 124

Query: 131 VFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVS 190
           +FAAIFNVGWAATQV+HMSMVNCITLNSTSRVVL SCRNAFTMVANLSLYA+AF+VF+ S
Sbjct: 125 MFAAIFNVGWAATQVSHMSMVNCITLNSTSRVVLASCRNAFTMVANLSLYAVAFVVFNSS 184

Query: 191 TAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKI 250
              T  D+ENQYRWIAY SI IGCCFV IFL  T+EPRLK G  G  +ARI W++WF+K+
Sbjct: 185 KPHTLVDIENQYRWIAYLSIAIGCCFVAIFLLGTKEPRLKKGAHGKGYARILWSHWFRKV 244

Query: 251 LYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQ 307
           LYYQVALVY+LTRLV NVSQA+LAFYVINDL+M QS+KALVPAIIYICSFIVSI+LQ
Sbjct: 245 LYYQVALVYVLTRLVTNVSQAFLAFYVINDLQMSQSSKALVPAIIYICSFIVSIILQ 301

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145331127|ref|NP_001078055.1| major facilitator protein [Arabidopsis thaliana] gi|145360981|ref|NP_181957.2| major facilitator protein [Arabidopsis thaliana] gi|22135824|gb|AAM91098.1| AT3g60070/T2O9_50 [Arabidopsis thaliana] gi|27363300|gb|AAO11569.1| At3g60070/T2O9_50 [Arabidopsis thaliana] gi|330255307|gb|AEC10401.1| major facilitator protein [Arabidopsis thaliana] gi|330255308|gb|AEC10402.1| major facilitator protein [Arabidopsis thaliana]

 Score =  484 bits (1247), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 227/309 (73%), Positives = 268/309 (86%)

Query: 1   MTSSTVMNYDIENDDSFTQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRG 60
           MTSS ++  + E +D  T+P+GR SV YYG GHMLNDITA+CWFTYLLLFLT IGLSPR 
Sbjct: 1   MTSSVIVGMEEEEEDPSTKPLGRLSVFYYGVGHMLNDITASCWFTYLLLFLTQIGLSPRD 60

Query: 61  AAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTS 120
           AA VMLSGQ+ADGFATIFIGELIDRFGHFKIWH AGS+LVA+SFSSVFGGC+PC +L  +
Sbjct: 61  AAIVMLSGQVADGFATIFIGELIDRFGHFKIWHAAGSLLVAISFSSVFGGCLPCSLLHNN 120

Query: 121 TLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLY 180
           +  +ET+SY +FAAIFN+GWAATQV+HM+MVNCITLNSTSRV LTS RNAF+MVANL LY
Sbjct: 121 SSTIETLSYSMFAAIFNIGWAATQVSHMAMVNCITLNSTSRVALTSSRNAFSMVANLGLY 180

Query: 181 AIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHAR 240
           AIA +VF VS A T  + E+QYRWIAYSSI +GCCFV IFL  T+EPRL++ LR  S AR
Sbjct: 181 AIALVVFGVSEAVTKENTESQYRWIAYSSITVGCCFVVIFLMGTKEPRLRINLRETSRAR 240

Query: 241 ISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSF 300
           I W+YWF+KILYYQVA+VY+LTRLV+NVSQAYLAF+VI+DL+M QSAKAL+PAIIY+CSF
Sbjct: 241 IPWSYWFRKILYYQVAMVYLLTRLVLNVSQAYLAFFVIDDLQMAQSAKALIPAIIYVCSF 300

Query: 301 IVSILLQVI 309
           +VS++LQ I
Sbjct: 301 VVSVMLQEI 309

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297828147|ref|XP_002881956.1| hypothetical protein ARALYDRAFT_903845 [Arabidopsis lyrata subsp. lyrata] gi|297327795|gb|EFH58215.1| hypothetical protein ARALYDRAFT_903845 [Arabidopsis lyrata subsp. lyrata]

 Score =  484 bits (1246), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 231/309 (74%), Positives = 267/309 (86%), Gaps = 1/309 (0%)

Query: 1   MTSSTVMNYDIENDDSFTQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRG 60
           MTSS  +  + E D S T+P+GR SV YYG GHMLNDITA+CWFTYLLLFLT IGLSPR 
Sbjct: 1   MTSSVTVGMEEEEDPS-TKPLGRLSVFYYGVGHMLNDITASCWFTYLLLFLTQIGLSPRD 59

Query: 61  AAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTS 120
           AA VMLSGQ+ADGFATIFIGELIDRFGHFKIWH AGS+LVA+SFSSVFGGC PC +L ++
Sbjct: 60  AAIVMLSGQVADGFATIFIGELIDRFGHFKIWHAAGSLLVAISFSSVFGGCFPCSLLHSN 119

Query: 121 TLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLY 180
           +  VET+SYC+FAAIFNVGWAATQV+HM+MVNCITLNSTSRV LTS RNAF+MVANL LY
Sbjct: 120 SSTVETLSYCMFAAIFNVGWAATQVSHMAMVNCITLNSTSRVALTSSRNAFSMVANLGLY 179

Query: 181 AIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHAR 240
           AIA +VF VS A T  + E QYRWIAYSSI +GCCFV IFL  T+EPR+K+ LR  S +R
Sbjct: 180 AIALVVFGVSKAVTKENTETQYRWIAYSSITVGCCFVVIFLMGTKEPRMKINLRETSRSR 239

Query: 241 ISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSF 300
           I W+YWF+KILYYQVA+VY+LTRLV+NVSQAYLAF+VI+DL+M QSAKAL+PAIIYICSF
Sbjct: 240 IPWSYWFRKILYYQVAMVYLLTRLVLNVSQAYLAFFVIDDLQMAQSAKALIPAIIYICSF 299

Query: 301 IVSILLQVI 309
           +VS++LQ I
Sbjct: 300 VVSVMLQEI 308

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	318
TAIR|locus:2050626	462	AT2G44280 "AT2G44280" [Arabido	0.971	0.668	0.689	9.1e-116
TAIR|locus:2101442	458	AT3G60070 "AT3G60070" [Arabido	0.930	0.646	0.712	1.5e-113
UNIPROTKB|Q6NUT3	480	MFSD12 "Major facilitator supe	0.522	0.345	0.346	1.4e-37
MGI|MGI:3604804	476	Mfsd12 "major facilitator supe	0.528	0.352	0.350	2e-37
ZFIN|ZDB-GENE-030131-4642	507	mfsd12a "major facilitator sup	0.622	0.390	0.331	1e-35
WB|WBGene00017530	501	F16H11.1 [Caenorhabditis elega	0.701	0.445	0.302	1.2e-25

TAIR|locus:2050626 AT2G44280 "AT2G44280" [Arabidopsis thaliana (taxid:3702)]

 Score = 1141 (406.7 bits), Expect = 9.1e-116, P = 9.1e-116
 Identities = 213/309 (68%), Positives = 252/309 (81%)

Query:     1 MTSSTVMNYDIENDDSFTQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRG 60
             MTSS ++  + E +D  T+P+GR SV YYG GHMLNDITA+CWFTYLLLFLT IGLSPR 
Sbjct:     1 MTSSVIVGMEEEEEDPSTKPLGRLSVFYYGVGHMLNDITASCWFTYLLLFLTQIGLSPRD 60

Query:    61 AAAVMLSGQIADGFATIFIGELIDRFGHFKIWHXXXXXXXXXXXXXXXXXCMPCRILSTS 120
             AA VMLSGQ+ADGFATIFIGELIDRFGHFKIWH                 C+PC +L  +
Sbjct:    61 AAIVMLSGQVADGFATIFIGELIDRFGHFKIWHAAGSLLVAISFSSVFGGCLPCSLLHNN 120

Query:   121 TLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLY 180
             +  +ET+SY +FAAIFN+GWAATQV+HM+MVNCITLNSTSRV LTS RNAF+MVANL LY
Sbjct:   121 SSTIETLSYSMFAAIFNIGWAATQVSHMAMVNCITLNSTSRVALTSSRNAFSMVANLGLY 180

Query:   181 AIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHAR 240
             AIA +VF VS A T  + E+QYRWIAYSSI +GCCFV IFL  T+EPRL++ LR  S AR
Sbjct:   181 AIALVVFGVSEAVTKENTESQYRWIAYSSITVGCCFVVIFLMGTKEPRLRINLRETSRAR 240

Query:   241 ISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSF 300
             I W+YWF+KILYYQVA+VY+LTRLV+NVSQAYLAF+VI+DL+M QSAKAL+PAIIY+CSF
Sbjct:   241 IPWSYWFRKILYYQVAMVYLLTRLVLNVSQAYLAFFVIDDLQMAQSAKALIPAIIYVCSF 300

Query:   301 IVSILLQVI 309
             +VS++LQ I
Sbjct:   301 VVSVMLQEI 309

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2101442 AT3G60070 "AT3G60070" [Arabidopsis thaliana (taxid:3702)]

 Score = 1120 (399.3 bits), Expect = 1.5e-113, P = 1.5e-113
 Identities = 211/296 (71%), Positives = 240/296 (81%)

Query:    14 DDSFTQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADG 73
             +D FT+P+GRWSV +YG GHMLNDITA+CWFTYLLLFLT IGLSPR AA VMLSGQ+AD 
Sbjct:     7 EDPFTKPIGRWSVFFYGVGHMLNDITASCWFTYLLLFLTQIGLSPRDAAIVMLSGQVADA 66

Query:    74 FATIFIGELIDRFGHFKIWHXXXXXXXXXXXXXXXXXCMPCRILSTSTLKVETISYCVFA 133
             FATIF GELIDRFGHFKIWH                 C+PC IL   +L +ET SY +FA
Sbjct:    67 FATIFTGELIDRFGHFKIWHAAGSLLVAISFSSVFGGCLPCSILHNDSLTLETFSYSMFA 126

Query:   134 AIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAK 193
             AIFN+GWAATQV+HM+MVNCI+LNSTSRV LTS RNAFTMVANL LYAIA +VF V  A 
Sbjct:   127 AIFNIGWAATQVSHMAMVNCISLNSTSRVALTSSRNAFTMVANLGLYAIALVVFGVIKAG 186

Query:   194 THADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYY 253
             +  D E QYRWIAYSSI IGCCFV IFL  T+EPRL++ L+  S ARI W YWF+KILYY
Sbjct:   187 SKEDTETQYRWIAYSSITIGCCFVVIFLMGTKEPRLRIDLKETSRARIPWVYWFRKILYY 246

Query:   254 QVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQVI 309
             QVA+VY+LTRLV+NVSQAYLAF+VI+DL+M QSAKALVPAIIYICSF+VS+LLQ I
Sbjct:   247 QVAMVYLLTRLVLNVSQAYLAFFVIDDLQMDQSAKALVPAIIYICSFVVSVLLQEI 302

GO:0003674 "molecular_function" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016020 "membrane" evidence=ISS

UNIPROTKB|Q6NUT3 MFSD12 "Major facilitator superfamily domain-containing protein 12" [Homo sapiens (taxid:9606)]

 Score = 274 (101.5 bits), Expect = 1.4e-37, Sum P(2) = 1.4e-37
 Identities = 61/176 (34%), Positives = 93/176 (52%)

Query:    19 QPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATI 77
             +P+   + L Y  GH LND+ A+ WFTYLLL+L  +   S RGA  ++L GQ+ADG  T 
Sbjct:    15 RPLSLVARLSYAVGHFLNDLCASMWFTYLLLYLHSVRAYSSRGAGLLLLLGQVADGLCTP 74

Query:    78 FIGELIDR-------FGHFKIWHXXXXXXXXXXXXXXXXXCMPCRILSTSTLKVETISYC 130
              +G   DR       +G  K WH                 C+ C   +     +  + Y 
Sbjct:    75 LVGYEADRAASCCARYGPRKAWHLVGTVCVLLSFPFIFSPCLGCGAATPEWAAL--LYYG 132

Query:   131 VFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIV 186
              F  IF  GWA+TQ++H+S++  +  N   +V LT+ R AFT+VAN+++Y  A+++
Sbjct:   133 PFIVIFQFGWASTQISHLSLIPELVTNDHEKVELTALRYAFTVVANITVYGAAWLL 188

GO:0006810 "transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

MGI|MGI:3604804 Mfsd12 "major facilitator superfamily domain containing 12" [Mus musculus (taxid:10090)]

 Score = 275 (101.9 bits), Expect = 2.0e-37, Sum P(2) = 2.0e-37
 Identities = 62/177 (35%), Positives = 91/177 (51%)

Query:    27 LYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDR 85
             L +  GH LND+ A  WFTYLLLFL  + G S RGA  ++L GQ+ADG  T  +G   DR
Sbjct:    22 LSFAVGHFLNDLCAGMWFTYLLLFLHSVRGYSSRGAGLLLLLGQVADGLCTPLVGYEADR 81

Query:    86 F-----GHFKIWHXXXXXXXXXXXXXXXXXCMPCRILSTSTLKVETISYCVFAAIFNVGW 140
                   G  K WH                 C+ C   +     +  + Y  F  +F  GW
Sbjct:    82 ASCVRCGPRKAWHLAGTVCVLLSFPFIFSPCLGCGEATPEWAAL--LYYGPFIVVFQFGW 139

Query:   141 AATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHAD 197
             AATQ+AH+S++  +  +   +V LT+ R AFT+VAN+++Y  A+++  +     H +
Sbjct:   140 AATQIAHLSLIPELVTSDHEKVELTALRYAFTVVANITVYGAAWLLLHLQ-GSAHGE 195

GO:0003674 "molecular_function" evidence=ND

GO:0006810 "transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

ZFIN|ZDB-GENE-030131-4642 mfsd12a "major facilitator superfamily domain containing 12a" [Danio rerio (taxid:7955)]

 Score = 274 (101.5 bits), Expect = 1.0e-35, Sum P(2) = 1.0e-35
 Identities = 71/214 (33%), Positives = 105/214 (49%)

Query:    27 LYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDR 85
             L Y  GH LND+ A+ WFTYLL+F   + G     A  ++L GQIADG  T  IG   DR
Sbjct:    15 LSYSVGHFLNDLCASMWFTYLLVFYHSVLGFENTYAGVLLLVGQIADGVCTPLIGYESDR 74

Query:    86 ------FGHFKIWHXXXXXXXXXXXXXXXXXCMPCRILSTSTLKVETISYCVFAAIFNVG 139
                   +G  K WH                 C+ C  L+T    V    +  F  IF  G
Sbjct:    75 TPGCGSYGKRKTWHLVGTISVLLSFPFIFNQCLGCD-LNTPQW-VSVTYFAPFIIIFQFG 132

Query:   140 WAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLE 199
             WAATQ++H+S++  +      +V LT+ R AFT++AN+++YA+A+++F        A ++
Sbjct:   133 WAATQISHLSLIPELVSCEHEKVELTAYRYAFTVIANITVYAVAWLLFHFQEGDDPAVMD 192

Query:   200 NQ-------YRWIAYSSIFIGCCFVGIFLSRTEE 226
             N        +R ++   + IG  F  +F   T E
Sbjct:   193 NLGSVDIPVFRNLSLIVVGIGAVFTFLFHLGTRE 226

GO:0003674 "molecular_function" evidence=ND

WB|WBGene00017530 F16H11.1 [Caenorhabditis elegans (taxid:6239)]

 Score = 295 (108.9 bits), Expect = 1.2e-25, P = 1.2e-25
 Identities = 73/241 (30%), Positives = 123/241 (51%)

Query:    84 DRFGHFKIWHXXXXXXXXXXXXXXXXXCMPCRILSTSTLKVETISYCVFAAIFNVGWAAT 143
             D+ G    WH                 C  C+  ++  LKV  + +  F  +F  GWA+ 
Sbjct:   105 DKIGRRMSWHLIGTVLVSLSFPMIFNKCFLCKSTTSEWLKV--LWFVPFIMVFQFGWASV 162

Query:   144 QVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLY-AIAFIVFSVSTAKTHA---DLE 199
             Q++H++++  ++    SR  + S R AFT++ANLS+Y A+A+++ S ST  T     D  
Sbjct:   163 QISHLALIPELSSVPASRATMNSLRYAFTVIANLSVYFALAWLL-SESTGHTSIGPWDFS 221

Query:   200 NQYRWIAYSSIFIGCCFVGIFLSRTEEP-RLKMGLRGNSHA-------RISWAYWFKKIL 251
             + +R   +  + +G     +F + T EP   +   R NS +       R+ W  WF  + 
Sbjct:   222 H-FRLAGWLVVVLGITVAFVFYAFTREPTNYRRFSRLNSFSSDASELVRMHWTSWFGHVQ 280

Query:   252 YYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSIL--LQVI 309
             +YQ+AL+YML+RL +N+SQ Y  FY+       +   A++P + Y+ SF VS++  L V+
Sbjct:   281 FYQIALLYMLSRLYINISQVYFPFYITMTQNYEKKYVAILPMVAYLSSFSVSMVNSLPVV 340

Query:   310 S 310
             S
Sbjct:   341 S 341

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	318
pfam13347	425	pfam13347, MFS_2, MFS/sugar transport protein	1e-36
COG2211	467	COG2211, MelB, Na+/melibiose symporter and related	7e-13
PRK09848	448	PRK09848, PRK09848, glucuronide transporter; Provi	6e-08
TIGR00792	437	TIGR00792, gph, sugar (Glycoside-Pentoside-Hexuron	4e-07

>gnl|CDD|222060 pfam13347, MFS_2, MFS/sugar transport protein

 Score =  135 bits (343), Expect = 1e-36
 Identities = 64/293 (21%), Positives = 114/293 (38%), Gaps = 16/293 (5%)

Query: 27  LYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELID- 84
           + YG G + N+I  A   TYLL F TD+ GLS      + L  +I D F    +G +ID 
Sbjct: 2   IGYGLGDLGNNIIYALLSTYLLYFYTDVLGLSAAAVGTIFLVARIWDAFTDPIVGAIIDR 61

Query: 85  ---RFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWA 141
              R+G F+ W   G++ +A+S   +F    P  +  T+ L    I+Y     +  + + 
Sbjct: 62  TRTRWGKFRPWLLIGAIPLAISLVLLFAT--PFGLSMTAKLIYAFITYI----LLGLAYT 115

Query: 142 ATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQ 201
              + + S++  +T +   R  L S R     +  L +  IA  + ++       +    
Sbjct: 116 FVNIPYWSLIPVLTRDPKERTSLASYRRIGATIGGLLVAVIAPPLVALLGGG---NGAKG 172

Query: 202 YRWIAYSSIFIGCCFVGIFLSRT-EEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYM 260
           Y   A     +      I  + T E   +    +     R  +   FK      + L+Y+
Sbjct: 173 YFLAALIIAILAVVGFLICFAGTKERVSVPPEQKEKVSLRDMFKALFKNRPLLILLLLYL 232

Query: 261 LTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQVISLKL 313
           L  L + V    L +Y    L        L+     I + + + L   ++ + 
Sbjct: 233 LNALAMAVRNGLLLYYFTYVLGNAGLFSVLLLIGT-IAAILGAPLWPWLAKRF 284

This family is part of the major facilitator superfamily of membrane transport proteins. Length = 425

>gnl|CDD|225121 COG2211, MelB, Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

 Score = 68.4 bits (168), Expect = 7e-13
 Identities = 57/287 (19%), Positives = 107/287 (37%), Gaps = 21/287 (7%)

Query: 29  YGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELID--- 84
           YG G   ++        YLL F TD+ GLS   A  + L  +I D      +G ++D   
Sbjct: 17  YGLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTR 76

Query: 85  -RFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAAT 143
            R+G F+ W   G++  A+    +F       I    ++  + I   V   +  +G+   
Sbjct: 77  SRWGRFRPWLLWGAIPFAIVAVLLF-------ITPDFSMTGKLIYALVTYMLLGLGYTLV 129

Query: 144 QVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYR 203
            + + ++   IT +   R  LTS R  F  +  L L A+ F             L   Y+
Sbjct: 130 NIPYGALGPEITQDPQERASLTSWRMVFASLGGL-LVAVLFPPLVKLFGGGDKAL--GYQ 186

Query: 204 WIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKIL----YYQVALVY 259
             A     IG   +       +E  ++      +  ++     F  I        + L+ 
Sbjct: 187 GTALVLGVIGVILLLFCFFNVKERVVETQ-PTKTGVKLKLKDSFLLIFKNRPLLLLLLMN 245

Query: 260 MLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILL 306
           +L  +  N+  + + +YV   L   +    L+  +      ++ ++L
Sbjct: 246 LLLFIAFNIRGSIMVYYVTYVLGDPELFAYLL-LLASGAGLLIGLIL 291

Length = 467

>gnl|CDD|182109 PRK09848, PRK09848, glucuronide transporter; Provisional

 Score = 53.3 bits (128), Expect = 6e-08
 Identities = 55/281 (19%), Positives = 112/281 (39%), Gaps = 35/281 (12%)

Query: 19  QPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATI 77
           Q +   +++ Y  G + N+   A    +LL + TD+ G+    A  ++L  ++ D FA +
Sbjct: 3   QQLSWRTIVGYSLGDVANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADV 62

Query: 78  FIGELID----RFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFA 133
           F G ++D    R+G F+ +   G+  + +    VF   +P     +S +    ++Y    
Sbjct: 63  FAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVF--WVPTDWSHSSKVVYAYLTY---- 116

Query: 134 AIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAK 193
               + ++   + + S+   +T    SR  L + R    + A+L+   +AF++       
Sbjct: 117 MGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAAR---GIAASLTFVCLAFLIGPSIKNS 173

Query: 194 THADLENQYRWIAYSSIFIGCCFVGIFLSRTEE--------PRLKMG---LRGNSHARIS 242
           +  ++ + Y +        G     I    T E        P LK+    L+ N      
Sbjct: 174 SPEEMVSVYHFWTIVLAIAGMVLYFICFKSTRENVVRIVAQPSLKISLQTLKRNR----- 228

Query: 243 WAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRM 283
                   +    AL  +++   V+ S  +   YV+ND  +
Sbjct: 229 -----PLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGL 264

Length = 448

>gnl|CDD|233128 TIGR00792, gph, sugar (Glycoside-Pentoside-Hexuronide) transporter

 Score = 50.7 bits (122), Expect = 4e-07
 Identities = 44/167 (26%), Positives = 67/167 (40%), Gaps = 23/167 (13%)

Query: 29  YGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELID--- 84
           YG G   N+   A   TYLL F TD+ GLS      + L  +I D      +G ++D   
Sbjct: 4   YGFGDFGNNFIFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTR 63

Query: 85  -RFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAAT 143
            R+G F+ W     +L+     S+        +L  +T         V+A I  +     
Sbjct: 64  TRWGKFRPW-----LLIGAIPFSIVL------VLLFTTPDFSATGKLVYAYITYILLGLF 112

Query: 144 ----QVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIV 186
                + + S+V  ITL+   R  L++ R      A L    +A IV
Sbjct: 113 YSFVNIPYWSLVPAITLDPRERESLSTFRRFG---ATLGGLLVAVIV 156

The Glycoside-Pentoside-Hexuronide (GPH):Cation Symporter Family (TC 2.A.2) GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 437

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	318
COG2211	467	MelB Na+/melibiose symporter and related transport	100.0
PRK11462	460	putative transporter; Provisional	100.0
PRK10429	473	melibiose:sodium symporter; Provisional	99.98
PRK09669	444	putative symporter YagG; Provisional	99.98
PF13347	428	MFS_2: MFS/sugar transport protein	99.97
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.97
PRK09848	448	glucuronide transporter; Provisional	99.96
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.9
PRK03545	390	putative arabinose transporter; Provisional	99.9
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.9
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.9
TIGR00900	365	2A0121 H+ Antiporter protein.	99.9
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.89
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.89
PRK11663	434	regulatory protein UhpC; Provisional	99.89
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.88
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.88
PRK10133	438	L-fucose transporter; Provisional	99.88
PRK11902	402	ampG muropeptide transporter; Reviewed	99.88
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.88
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.87
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.87
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.87
PLN00028	476	nitrate transmembrane transporter; Provisional	99.87
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.87
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.87
TIGR00893	399	2A0114 d-galactonate transporter.	99.87
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.87
TIGR00901	356	2A0125 AmpG-related permease.	99.87
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.87
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.87
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.87
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.86
PRK11010	491	ampG muropeptide transporter; Validated	99.86
TIGR00891	405	2A0112 putative sialic acid transporter.	99.86
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.86
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.86
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.86
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.86
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.85
PRK10091	382	MFS transport protein AraJ; Provisional	99.85
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.85
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.85
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.85
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.85
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.84
PRK09705	393	cynX putative cyanate transporter; Provisional	99.84
PRK10504	471	putative transporter; Provisional	99.84
PRK10054	395	putative transporter; Provisional	99.84
PRK10489	417	enterobactin exporter EntS; Provisional	99.83
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.83
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.83
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.83
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.83
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.83
PRK09874	408	drug efflux system protein MdtG; Provisional	99.83
PRK12307	426	putative sialic acid transporter; Provisional	99.82
PRK03699	394	putative transporter; Provisional	99.82
PRK11043	401	putative transporter; Provisional	99.82
TIGR00895	398	2A0115 benzoate transport.	99.81
PRK03633	381	putative MFS family transporter protein; Provision	99.81
PRK09528	420	lacY galactoside permease; Reviewed	99.81
PRK15011	393	sugar efflux transporter B; Provisional	99.81
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.81
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.81
PRK10642	490	proline/glycine betaine transporter; Provisional	99.8
KOG2532	466	consensus Permease of the major facilitator superf	99.79
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.79
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.79
PRK05122	399	major facilitator superfamily transporter; Provisi	99.79
PRK15075	434	citrate-proton symporter; Provisional	99.79
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.78
PRK09952	438	shikimate transporter; Provisional	99.78
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.78
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.78
PRK12382	392	putative transporter; Provisional	99.78
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.77
TIGR00805	633	oat sodium-independent organic anion transporter.	99.76
PRK03893	496	putative sialic acid transporter; Provisional	99.75
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.75
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.75
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.74
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.74
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.74
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.72
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.72
KOG4830	412	consensus Predicted sugar transporter [Carbohydrat	99.71
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.7
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.7
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.7
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.69
TIGR00898	505	2A0119 cation transport protein.	99.68
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.67
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.66
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.65
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	99.62
KOG2533	495	consensus Permease of the major facilitator superf	99.61
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.61
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.6
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.56
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.56
KOG0569	485	consensus Permease of the major facilitator superf	99.51
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.51
KOG0637	498	consensus Sucrose transporter and related proteins	99.49
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.46
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.45
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.45
PTZ00207	591	hypothetical protein; Provisional	99.38
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.36
KOG0254	513	consensus Predicted transporter (major facilitator	99.35
PRK09705	393	cynX putative cyanate transporter; Provisional	99.34
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	99.33
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	99.31
KOG2325	488	consensus Predicted transporter/transmembrane prot	99.28
KOG2615	451	consensus Permease of the major facilitator superf	99.24
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.23
PRK10642	490	proline/glycine betaine transporter; Provisional	99.23
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.19
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.19
PRK15011	393	sugar efflux transporter B; Provisional	99.17
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.16
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.16
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.16
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.15
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.14
PRK10504	471	putative transporter; Provisional	99.14
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.13
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.13
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.13
PRK03633	381	putative MFS family transporter protein; Provision	99.12
PRK11663	434	regulatory protein UhpC; Provisional	99.12
KOG2563	480	consensus Permease of the major facilitator superf	99.12
PRK03699	394	putative transporter; Provisional	99.12
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.12
PRK05122	399	major facilitator superfamily transporter; Provisi	99.11
PRK03545	390	putative arabinose transporter; Provisional	99.09
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.09
PRK09528	420	lacY galactoside permease; Reviewed	99.09
TIGR00893	399	2A0114 d-galactonate transporter.	99.09
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.09
PRK10489	417	enterobactin exporter EntS; Provisional	99.08
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.07
PRK09952	438	shikimate transporter; Provisional	99.05
PRK09874	408	drug efflux system protein MdtG; Provisional	99.05
PRK12382	392	putative transporter; Provisional	99.05
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.03
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	99.02
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.0
KOG3626	735	consensus Organic anion transporter [Secondary met	98.99
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	98.97
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	98.97
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.97
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	98.96
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	98.96
PRK03893	496	putative sialic acid transporter; Provisional	98.96
PRK11010	491	ampG muropeptide transporter; Validated	98.94
PRK10091	382	MFS transport protein AraJ; Provisional	98.94
TIGR00892	455	2A0113 monocarboxylate transporter 1.	98.93
PRK15075	434	citrate-proton symporter; Provisional	98.93
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	98.92
PRK12307	426	putative sialic acid transporter; Provisional	98.92
TIGR00896	355	CynX cyanate transporter. This family of proteins	98.91
TIGR00891	405	2A0112 putative sialic acid transporter.	98.91
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	98.88
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.87
PRK10406	432	alpha-ketoglutarate transporter; Provisional	98.87
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	98.87
PRK09848	448	glucuronide transporter; Provisional	98.86
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	98.86
TIGR00900	365	2A0121 H+ Antiporter protein.	98.85
PLN00028	476	nitrate transmembrane transporter; Provisional	98.84
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	98.84
KOG0569	485	consensus Permease of the major facilitator superf	98.82
PRK14995	495	methyl viologen resistance protein SmvA; Provision	98.82
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	98.81
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	98.81
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	98.81
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	98.8
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	98.79
PF12832	77	MFS_1_like: MFS_1 like family	98.79
PF13347	428	MFS_2: MFS/sugar transport protein	98.77
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	98.77
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	98.77
TIGR00895	398	2A0115 benzoate transport.	98.75
PRK10054	395	putative transporter; Provisional	98.68
KOG2816	463	consensus Predicted transporter ADD1 (major facili	98.67
TIGR00898	505	2A0119 cation transport protein.	98.67
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	98.66
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	98.65
PRK09669	444	putative symporter YagG; Provisional	98.65
PRK11902	402	ampG muropeptide transporter; Reviewed	98.65
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	98.64
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.63
PRK10213	394	nepI ribonucleoside transporter; Reviewed	98.63
PRK11195	393	lysophospholipid transporter LplT; Provisional	98.61
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	98.61
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	98.59
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	98.59
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	98.58
TIGR00901	356	2A0125 AmpG-related permease.	98.58
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	98.57
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	98.55
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	98.54
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	98.54
PRK11646	400	multidrug resistance protein MdtH; Provisional	98.54
PRK10473	392	multidrug efflux system protein MdtL; Provisional	98.53
PRK10429	473	melibiose:sodium symporter; Provisional	98.53
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	98.5
KOG2532	466	consensus Permease of the major facilitator superf	98.49
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.42
PRK10133	438	L-fucose transporter; Provisional	98.39
PRK11043	401	putative transporter; Provisional	98.39
PRK11462	460	putative transporter; Provisional	98.35
COG2211	467	MelB Na+/melibiose symporter and related transport	98.35
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	98.32
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	98.31
COG2270	438	Permeases of the major facilitator superfamily [Ge	98.22
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	98.2
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	98.15
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	98.14
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	98.14
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.14
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.1
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	98.06
TIGR00788	468	fbt folate/biopterin transporter. The only functio	97.96
PRK10207	489	dipeptide/tripeptide permease B; Provisional	97.87
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	97.83
KOG0254	513	consensus Predicted transporter (major facilitator	97.79
KOG2533	495	consensus Permease of the major facilitator superf	97.78
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	97.75
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	97.75
KOG3098	461	consensus Uncharacterized conserved protein [Funct	97.7
PRK15403	413	multidrug efflux system protein MdtM; Provisional	97.69
KOG3762	618	consensus Predicted transporter [General function	97.65
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	97.59
COG0477	338	ProP Permeases of the major facilitator superfamil	97.58
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	97.54
KOG3764	464	consensus Vesicular amine transporter [Intracellul	97.52
PRK09584	500	tppB putative tripeptide transporter permease; Rev	97.41
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	97.12
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	96.95
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	96.71
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	96.68
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	96.49
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	96.45
KOG3762	618	consensus Predicted transporter [General function	96.37
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	96.2
PF12832	77	MFS_1_like: MFS_1 like family	96.09
TIGR00805	633	oat sodium-independent organic anion transporter.	95.86
PRK15462	493	dipeptide/tripeptide permease D; Provisional	95.68
PRK03612	521	spermidine synthase; Provisional	95.58
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	95.38
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	95.35
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	95.1
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	94.43
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	94.22
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	93.84
KOG2563	480	consensus Permease of the major facilitator superf	93.52
KOG2816	463	consensus Predicted transporter ADD1 (major facili	92.57
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	91.61
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	90.02
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	89.81
KOG2615	451	consensus Permease of the major facilitator superf	88.09
PTZ00207	591	hypothetical protein; Provisional	84.57
KOG3098	461	consensus Uncharacterized conserved protein [Funct	80.23

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=100.00  E-value=2e-33  Score=259.30  Aligned_cols=289  Identities=20%  Similarity=0.253  Sum_probs=239.6

Q ss_pred             CCCCCCCCchhhhhhcccchHHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhh----hccCc
Q 021040           15 DSFTQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELID----RFGHF   89 (318)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsD----r~Grr   89 (318)
                      |+.++|++.++++.|++|++++.+.....+.|++.|++++ |+++..+|.++.+..+.|++.+|+.|.++|    |||||
T Consensus         3 ~~~~~kLs~~eki~Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~Grf   82 (467)
T COG2211           3 NSSSKKLSLKEKIGYGLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRF   82 (467)
T ss_pred             CcccCcccHHHHHhhcchhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccc
Confidence            4456899999999999999999999999999999999998 999999999999999999999999999999    69999


Q ss_pred             hHHHHHHHHHHHHHHHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHH
Q 021040           90 KIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRN  169 (318)
Q Consensus        90 ~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~  169 (318)
                      |||+++|.++.++...++|.  .|. ++.+.+..+..++    ..+++++++..+.|+.++.+++++|++||.+..++|+
T Consensus        83 RP~lL~g~ip~~i~~~l~F~--~p~-~~~~~k~~ya~vt----Y~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~  155 (467)
T COG2211          83 RPWLLWGAIPFAIVAVLLFI--TPD-FSMTGKLIYALVT----YMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRM  155 (467)
T ss_pred             cHHHHHHhHHHHHHHHHHHc--CCC-cccCcchHHHHHH----HHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHH
Confidence            99999999999999888885  331 1112222333333    3568899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhcccccccccc-cC--CCCchHHHHHHH
Q 021040          170 AFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMG-LR--GNSHARISWAYW  246 (318)
Q Consensus       170 ~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~-~~--~~~~~~~~~~~~  246 (318)
                      .+.++|.++...+..|++..+++   +|...+|+....+.++++++..+.+++.+||+..+.+ .+  .+.+.++++..+
T Consensus       156 ~~~~~g~~l~~~~~~plv~~~g~---~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~~~~~~~~~~~~~~~~~~~  232 (467)
T COG2211         156 VFASLGGLLVAVLFPPLVKLFGG---GDKALGYQGTALVLGVIGVILLLFCFFNVKERVVETQPTKTGVKLKLKDSFLLI  232 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCC---CcchhhHHHHHHHHHHHHHHHHHHHHHHhhcccCccccCcccccccHHHHHHHH
Confidence            99999999988888899887663   2335788888889999999999999999999865332 12  345667778889


Q ss_pred             HhcHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 021040          247 FKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQVISLKL  313 (318)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~v~~~i~~~~~~~i~~~~  313 (318)
                      +|||+++.+++.+++...+.+...+.+++|.++++|-+.............+.+++..+.+++.||+
T Consensus       233 ~~Nrp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~  299 (467)
T COG2211         233 FKNRPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKF  299 (467)
T ss_pred             HccchHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence            9999999999999999999999999999999999987765544444444555555566666666664

>PRK11462 putative transporter; Provisional

Probab=100.00  E-value=6.7e-31  Score=248.98  Aligned_cols=281  Identities=15%  Similarity=0.196  Sum_probs=216.5

Q ss_pred             CCCCchhhhhhcccchHHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhh----hccCchHHH
Q 021040           19 QPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELID----RFGHFKIWH   93 (318)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsD----r~Grr~~~l   93 (318)
                      +|+++++++.|++|+++....+.....|++.|+++. |+++..+|.++.+..++|++.+|+.|+++|    ||||||||+
T Consensus         4 ~~l~~~~k~~Yg~g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~i   83 (460)
T PRK11462          4 EVLSVKEKIGYGMGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWV   83 (460)
T ss_pred             CcccHhHHHhhccchhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhH
Confidence            689999999999999999999999999999999997 999999999999999999999999999999    589999999


Q ss_pred             HHHHHHHHHHHHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHH
Q 021040           94 GAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTM  173 (318)
Q Consensus        94 ~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~  173 (318)
                      ++|.++.++++.++|.  .| ..+.    ....+++.+..+++..+++..++|+.++.+|+++|++||+++.++|+.+.+
T Consensus        84 l~g~i~~~i~~~llf~--~p-~~s~----~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~  156 (460)
T PRK11462         84 LFGALPFGIVCVLAYS--TP-DLSM----NGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLAT  156 (460)
T ss_pred             hHHHHHHHHHHHHHHh--CC-CCCc----chHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence            9999999999888885  34 1111    112333444445678999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCCCchHHHHHHHHhcHHHH
Q 021040          174 VANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYY  253 (318)
Q Consensus       174 ~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (318)
                      +|..+++.+..|++..++.   .+...+|++...+.+++++++..+++...||+++++  +++.+.++.++.++|||+++
T Consensus       157 iG~~~~~~~~~plv~~~g~---~~~~~g~~~~~~i~~ii~~i~~~i~~~~~kE~~~~~--~~~~~~~~~l~~~~~Nk~~~  231 (460)
T PRK11462        157 AGGMLSTVLMMPLVNLIGG---DNKPLGFQGGIAVLSVVAFMMLAFCFFTTKERVEAP--PTTTSMREDLRDIWQNDQWR  231 (460)
T ss_pred             HHHHHHHHHHHHHHHHhCC---CchhhhHHHHHHHHHHHHHHHHHHHHhcceeccCCC--ccCCCHHHHHHHHhCChHHH
Confidence            9998888887787765542   122357888778888888888777777788864332  23345778889999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 021040          254 QVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQVISLK  312 (318)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~v~~~i~~~~~~~i~~~  312 (318)
                      .++...++.............+|.++..|.+.. ...+..+..++++++..+.++++||
T Consensus       232 ~l~~~~~~~~~~~~~~~~~~~y~~~y~~g~~~~-~~~~l~~~~i~~iig~~l~~~l~~r  289 (460)
T PRK11462        232 IVGLLTIFNILAVCVRGGAMMYYVTWILGTPEV-FVAFLTTYCVGNLIGSALAKPLTDW  289 (460)
T ss_pred             HHHHHHHHHHHHHHHHHhHhhhhhhhhcCChHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888777777766655555555555555554332 2222233345555555555665554

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.98  E-value=2.9e-30  Score=245.73  Aligned_cols=283  Identities=16%  Similarity=0.205  Sum_probs=216.1

Q ss_pred             CCCchhhhhhcccchHHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhh----hccCchHHHH
Q 021040           20 PVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELID----RFGHFKIWHG   94 (318)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsD----r~Grr~~~l~   94 (318)
                      |++.++++.|++|+++.++.+.+..+|++.|+++. |+++.++|.++.+..+++++.+|+.|+++|    ||||||||++
T Consensus         2 ~l~~~~~~~yg~g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il   81 (473)
T PRK10429          2 SISMTTKLSYGFGAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWIL   81 (473)
T ss_pred             CCchhHHHhhccchhHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHh
Confidence            78899999999999999999999999999999998 999999999999999999999999999999    6799999999


Q ss_pred             HHHHHHHHHHHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHH
Q 021040           95 AGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMV  174 (318)
Q Consensus        95 ~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~  174 (318)
                      ++.++.++++.++|.  .| ...    ....++.+.+..++++++++...+|+.++.+|+++|++||.++.+++..+.++
T Consensus        82 ~g~i~~~i~~~llf~--~p-~~~----~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~i  154 (473)
T PRK10429         82 IGTLANSVVLFLLFS--AH-LFE----GTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASL  154 (473)
T ss_pred             hhhHHHHHHHHHHHc--CC-CCC----ccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHH
Confidence            999999999877774  23 111    11123333444456788999999999999999998899999999998888888


Q ss_pred             HHHHHHHHHHHHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhcccccccccc----cCCCCchHHHHHHHHhcH
Q 021040          175 ANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMG----LRGNSHARISWAYWFKKI  250 (318)
Q Consensus       175 g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~----~~~~~~~~~~~~~~~~~~  250 (318)
                      |+.+.+.+..+++..++.   .+...+|++...+.+++..++.+++++.+||++.+++    ++++.+.++.++.++|||
T Consensus       155 g~~~~~~~~~~~~~~~g~---~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~n~  231 (473)
T PRK10429        155 AGFVTAGFTLPFVNYVGG---GDRGFGFQMFTLVLIAFFIVSTIITLRNVHEVYSSDNQVSAEGSHLTLKDIVALIYKND  231 (473)
T ss_pred             HHHHHHHHHHHHHHHhCC---CchhhhHHHHHHHHHHHHHHHHHHHHcCceecCCccccccccccCCCHHHHHHHHhcCH
Confidence            877776666666654432   1223568888888888877777777788888643211    123445778888899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 021040          251 LYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQVISLKL  313 (318)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~v~~~i~~~~~~~i~~~~  313 (318)
                      +++.++...++.+...+....+.+.|.++..+. ......+..+..++++++.++.++++||.
T Consensus       232 ~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~~-~~~~~~~~~~~~i~~ii~~~~~~~l~~r~  293 (473)
T PRK10429        232 QLSCLLGMALAYNIASNIINGFAIYYFTYVIGD-ADLFPYYLSYAGAANLVTLILFPRLVKSL  293 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhheeeEEEEECCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            999999888888888887777877777776553 33333333333345555555555555543

>PRK09669 putative symporter YagG; Provisional

Probab=99.98  E-value=4.9e-30  Score=242.31  Aligned_cols=284  Identities=19%  Similarity=0.196  Sum_probs=215.7

Q ss_pred             CCCCCCchhhhhhcccchHHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhh----ccCchH
Q 021040           17 FTQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDR----FGHFKI   91 (318)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr----~Grr~~   91 (318)
                      |++|+++++++.|++|+++....+.....|+++|+++. |+|++++|.++.+..+++++.+|+.|+++||    ||||||
T Consensus         2 ~~~~l~~~~~~~yg~g~~~~~~~~~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp   81 (444)
T PRK09669          2 NTSQLTTKDKIGYGLGDTACNLVWQTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRP   81 (444)
T ss_pred             CCCcccHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcch
Confidence            34789999999999999999988888899999999997 9999999999999999999999999999996    999999


Q ss_pred             HHHHHHHHHHHHHHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHH
Q 021040           92 WHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAF  171 (318)
Q Consensus        92 ~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~  171 (318)
                      |++++.++.+++..++|.  .|. .+..    ...+.+.+...+++.+++...+|+.++.+|+++|++||++..+++..+
T Consensus        82 ~il~~~~~~~i~~~l~f~--~p~-~~~~----~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~  154 (444)
T PRK09669         82 YLLWFAIPFGVVCLLTFY--TPD-FGAT----GKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFAL  154 (444)
T ss_pred             hHHHHHHHHHHHHHHHHh--CCC-CCcc----hHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHH
Confidence            999998888888776664  341 1111    122333333345677888899999999999998889999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCCCchHHHHHHHHhcHH
Q 021040          172 TMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKIL  251 (318)
Q Consensus       172 ~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~  251 (318)
                      .++|..+++.+..|+...++.   ++...+|+..+.+.++++.++.+++++..||+++++ ++++.+.++++++++|||+
T Consensus       155 ~~~G~~i~~~~~~pl~~~~~~---~~~~~g~~~~~~i~~ii~~v~~~~~~~~~~e~~~~~-~~~~~~~~~~~~~~~~n~~  230 (444)
T PRK09669        155 SFIGGLIVSVIALPLVDILGK---GDEQKGYFYAMMVMGLLGVVLFFCCFFMTKERYTPE-VDNSSSVWKDLKLLLGNSQ  230 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHhCC---CchhhhHHHHHHHHHHHHHHHHHHHhCCeEEecCCC-CcCCCCHHHHHHHHhCCch
Confidence            999998888877777765542   122457888888888888777777777788864332 2234456788999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 021040          252 YYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQVISLK  312 (318)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~v~~~i~~~~~~~i~~~  312 (318)
                      ++.++..+++............++|.++..+... ....+.....+.++++..+.+++.||
T Consensus       231 ~~~l~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~-~~~~~~~~~~i~~ii~~~~~~~l~~r  290 (444)
T PRK09669        231 WRIMFIFNVVLLTAVVTRGGATLYYVNYVLLRPD-LATLFLVTGMIAGLFGALLSERLLGK  290 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhheeeeeecCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999888887777776666666666666554322 22223333445555666666666665

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.97  E-value=1.2e-30  Score=245.39  Aligned_cols=280  Identities=26%  Similarity=0.393  Sum_probs=227.9

Q ss_pred             hhhhhcccchHHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhh----hccCchHHHHHHHHH
Q 021040           25 SVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELID----RFGHFKIWHGAGSVL   99 (318)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsD----r~Grr~~~l~~g~~~   99 (318)
                      ++.+|++|+++.++.+.....|+++|+++. |+++..+|++..+..+++++.+|+.|.++|    ||||||||+++|.++
T Consensus         2 ~~~ay~~g~~~~~~~~~~~~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~   81 (428)
T PF13347_consen    2 KKLAYGIGDLGYNMIWSLLSSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAIL   81 (428)
T ss_pred             cEEEeeHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHH
Confidence            345699999999999999999999999998 999999999999999999999999999999    899999999999999


Q ss_pred             HHHHHHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHH
Q 021040          100 VAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSL  179 (318)
Q Consensus       100 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~  179 (318)
                      .++++.++|. ..|...+...    ..+...+..+++.++++..+.|+.++.+|+++|++||.+..++++.+..+|.++.
T Consensus        82 ~~~~~~llf~-~~p~~~~~~~----~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~  156 (428)
T PF13347_consen   82 LALSFFLLFS-PPPAGLSFTA----KLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLA  156 (428)
T ss_pred             HHHHHHHhhc-cccchhhhhh----HHHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHH
Confidence            9999988884 1132222111    1222233345678999999999999999999999999999999999999999877


Q ss_pred             HHHHHHHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhccccccc-ccccCCCCchHHHHHHHHhcHHHHHHHHH
Q 021040          180 YAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRL-KMGLRGNSHARISWAYWFKKILYYQVALV  258 (318)
Q Consensus       180 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (318)
                      +.+.++++..++.   ++...+|++...+.++++.++.++..+.+||+++ .++++++.+.++.+++++|||+++.++..
T Consensus       157 ~~~~~~l~~~~g~---~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke~~~~~~~~~~~~~~~~~~~~~~~nr~~~~l~~~  233 (428)
T PF13347_consen  157 SFLAPILVSWFGG---GDTSNGYRWMALVLAIVGLVFFLITFFFVKERSVEVTEQEKKISLRDSLRSLFRNRPFRILLLA  233 (428)
T ss_pred             HHHhhhhhhhhcc---CccchHHHHHHHHHHHHHHHHhhhhhheeeeccccccccccccccccchhhhcccchHHHHHHH
Confidence            7777777765542   1112389999999999999999999999999322 22334455678889999999999999999


Q ss_pred             HHHHHHHHHHHHHHhHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 021040          259 YMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQVISLKL  313 (318)
Q Consensus       259 ~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~v~~~i~~~~~~~i~~~~  313 (318)
                      +++.++......+..++|.++..|.+. ....+..+..+.++++.++.++++||+
T Consensus       234 ~~~~~~~~~~~~~~~~y~~~~vl~~~~-~~~~~~~~~~~~~~v~~~~~~~l~~r~  287 (428)
T PF13347_consen  234 FFLQWLAFALMNTFLPYYFTYVLGNEG-LISIFMLIFFVASIVGSPLWGRLSKRF  287 (428)
T ss_pred             HHHHHhhhhhhhhHHHHHHHHHhcCch-hhHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            999999998888889999999888773 444555566778888888888888886

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.97  E-value=2.2e-28  Score=230.13  Aligned_cols=277  Identities=21%  Similarity=0.303  Sum_probs=209.6

Q ss_pred             hhhhcccchHHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhh----ccCchHHHHHHHHHH
Q 021040           26 VLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDR----FGHFKIWHGAGSVLV  100 (318)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr----~Grr~~~l~~g~~~~  100 (318)
                      ++.|++|+++.+..+.+..+|+++|+++. |+++.++|+++++..+.+++.+|+.|+++||    +||||+++..+.++.
T Consensus         1 ~~~yg~g~~~~~~~~~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~   80 (437)
T TIGR00792         1 KLSYGFGDFGNNFIFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPF   80 (437)
T ss_pred             CeeeecchHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHH
Confidence            36799999999999999999999999986 9999999999999999999999999999996    899999999998888


Q ss_pred             HHHHHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHH
Q 021040          101 AVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLY  180 (318)
Q Consensus       101 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~  180 (318)
                      +++..+++.  .|. ..    ....+..+.+...+.+++++...+|+.++.+|++++++||++..++++.+.++|.++++
T Consensus        81 ~i~~~~~~~--~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~  153 (437)
T TIGR00792        81 SIVLVLLFT--TPD-FS----ATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVA  153 (437)
T ss_pred             HHHHHHHHh--CCC-CC----cchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888777764  331 11    11112223333345778888888999999999988889999999999999999988888


Q ss_pred             HHHHHHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhcccccccccc--cCCCCchHHHHHHHHhcHHHHHHHHH
Q 021040          181 AIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMG--LRGNSHARISWAYWFKKILYYQVALV  258 (318)
Q Consensus       181 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (318)
                      .+.+++...++.   ++...+|++.+.+.+++++++.++.++.+||++++++  ++++.+.++.+++++|||+++.++..
T Consensus       154 ~~~~~l~~~~~~---~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  230 (437)
T TIGR00792       154 VIVLPLVSYFGG---GDDKFGWFMFALVLALIGVVSLIICFFGTKERYSEIPKNIEKKLSLKQIFKALFKNDQLLILCLA  230 (437)
T ss_pred             HHHHHHHHHhCC---CcccccHHHHHHHHHHHHHHHHHHHHcCCEecCCCCCcccccCCCHHHHHHHHhCCHHHHHHHHH
Confidence            777777765431   1124579999988888888888777788888753311  12234567788999999999999888


Q ss_pred             HHHHHHHHHHHHHHhHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 021040          259 YMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQVISLKL  313 (318)
Q Consensus       259 ~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~v~~~i~~~~~~~i~~~~  313 (318)
                      .++.+.+......+.+.|.++..+ +....+.+..+..++++++.++.+++.||.
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~  284 (437)
T TIGR00792       231 YLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKF  284 (437)
T ss_pred             HHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            888888877776777777777666 333333333344555555555555555554

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK09848 glucuronide transporter; Provisional

Probab=99.96  E-value=1.7e-26  Score=218.39  Aligned_cols=285  Identities=17%  Similarity=0.215  Sum_probs=202.7

Q ss_pred             CCCCCchhhhhhcccchHHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhh----ccCchHH
Q 021040           18 TQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDR----FGHFKIW   92 (318)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr----~Grr~~~   92 (318)
                      .+|+++++++.|+++++++.+...+..+|+++|+++. |+++.++|.++.+..+++++.+|+.|+++||    +||||+|
T Consensus         2 ~~~~~~~~~~~yg~g~~~~~~~~~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~   81 (448)
T PRK09848          2 NQQLSWRTIVGYSLGDVANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPF   81 (448)
T ss_pred             CCcccHHHHHhhccchHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHH
Confidence            3689999999999999999999999999999999997 9999999999999999999999999999997    5999999


Q ss_pred             HHHHHHHHHHHHHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHH
Q 021040           93 HGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFT  172 (318)
Q Consensus        93 l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~  172 (318)
                      +.++.++..+...+++.  .|........    .....+...+.+++++...+|+.++..+++.|++||.+..++|+.+.
T Consensus        82 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~  155 (448)
T PRK09848         82 LLFGTAPLMIFSVLVFW--VPTDWSHSSK----VVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAA  155 (448)
T ss_pred             HHHHHHHHHHHHHHHHh--CcCCCCcchH----HHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHH
Confidence            88888777766665553  3322211111    12222223456788899999999999999988899999999998877


Q ss_pred             HHHHHHHHHHHHHHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCCCchHHHHHHHHhcHHH
Q 021040          173 MVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILY  252 (318)
Q Consensus       173 ~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (318)
                      +++........+|++....+   ++....|.....+.+++++++.++.....||+.+++  +++.+.++.+++++|||++
T Consensus       156 ~~~~~~~~~~~~p~i~~~~g---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~e~~~~~--~~~~~~~~~~~~l~~n~~f  230 (448)
T PRK09848        156 SLTFVCLAFLIGPSIKNSSP---EEMVSVYHFWTIVLAIAGMVLYFICFKSTRENVVRI--VAQPSLKISLQTLKRNRPL  230 (448)
T ss_pred             HHHHHHHHHHHHHHHHHhCC---CchhhhHHHHHHHHHHHHHHHHHHHHcCcEeccCCC--ccCCCHHHHHHHHhCCchH
Confidence            77655444444565543321   111123322224445555555556666677764332  2234567778999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 021040          253 YQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQVISLKL  313 (318)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~v~~~i~~~~~~~i~~~~  313 (318)
                      +...+..++............|.|+++.+|.++...........++.+++..+.+|+.+|.
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~  291 (448)
T PRK09848        231 FMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARI  291 (448)
T ss_pred             HHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9998888888888887778889999998887654322222222344555555555555553

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.90  E-value=2.9e-21  Score=181.83  Aligned_cols=293  Identities=15%  Similarity=0.054  Sum_probs=201.1

Q ss_pred             CCchhhhhhcccchHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhh----hccCchHHHHHH
Q 021040           21 VGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELID----RFGHFKIWHGAG   96 (318)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsD----r~Grr~~~l~~g   96 (318)
                      +|+|+.+..+...++.|+.+.+..+++++|++++|+++.+.+++..+..+.+.+.+|+.|+++|    |+||||+++..+
T Consensus         1 ~~~~~li~~~~~~~Giq~~~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g   80 (477)
T TIGR01301         1 VPLRKLLRVASVAAGVQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAG   80 (477)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHH
Confidence            3688999999999999999999999999999888999999999999999999999999999999    599999998777


Q ss_pred             HHHHHHHHHHHhC-CCCCCcccC---ccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccch-hHHHHHHHHH
Q 021040           97 SVLVAVSFSSVFG-GCMPCRILS---TSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSR-VVLTSCRNAF  171 (318)
Q Consensus        97 ~~~~~i~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R-~~~~~~~~~~  171 (318)
                      .+..++++.++.+ +.+...+..   ..+.......+.+...+.+++.+..+.|+.++++|++++++|| +.+.++.+.+
T Consensus        81 ~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~  160 (477)
T TIGR01301        81 AALVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFF  160 (477)
T ss_pred             HHHHHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHH
Confidence            7777777665532 100000000   0011111122222223466788888999999999999865554 5788999999


Q ss_pred             HHHHHHHHHHHHHHH--HHhhccC---cccchhHHHHHHHHHHHHHHHHHHHHHHhccccccccccc---------CCCC
Q 021040          172 TMVANLSLYAIAFIV--FSVSTAK---THADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGL---------RGNS  237 (318)
Q Consensus       172 ~~~g~~~~~~~~~~l--~~~~~~~---~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~~---------~~~~  237 (318)
                      .++|+++++.+++..  ...++..   ..+....++++.|++.+++.+++.++.++.+||++..+++         .++.
T Consensus       161 ~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~~~~~~~~~~  240 (477)
T TIGR01301       161 MAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFINSEAAPPSKH  240 (477)
T ss_pred             HHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchhhhccccccc
Confidence            999999998877643  1111100   0011124789999988888888888888999997531110         0111


Q ss_pred             ----chHHHHHHHHhc-HHHHHHHHHHHHHHHHHHHHHHHhHHhhhh-ccccccc---------hhhHHHH-HHHHHHHH
Q 021040          238 ----HARISWAYWFKK-ILYYQVALVYMLTRLVVNVSQAYLAFYVIN-DLRMGQS---------AKALVPA-IIYICSFI  301 (318)
Q Consensus       238 ----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~-~~g~~~~---------~~~~~~~-~~~v~~~i  301 (318)
                          .+++-++.+.+- |+++.++.++++.+++...+..|...|+-+ .++-++.         ..+.... +..+.+.+
T Consensus       241 ~~~~~~~~i~~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i  320 (477)
T TIGR01301       241 GEEAFFGELFGAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGI  320 (477)
T ss_pred             chhhhHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence                122333343333 559999999999999999999999888774 4443321         1233332 33355566


Q ss_pred             HHHHHHHHHHhh
Q 021040          302 VSILLQVISLKL  313 (318)
Q Consensus       302 ~~~~~~~i~~~~  313 (318)
                      .+++.+++.||+
T Consensus       321 ~s~~l~~l~~~~  332 (477)
T TIGR01301       321 TSIGMEKLCRGW  332 (477)
T ss_pred             HHHHHHHHHHHh
Confidence            677777776654

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PRK03545 putative arabinose transporter; Provisional

Probab=99.90  E-value=3.4e-21  Score=178.90  Aligned_cols=262  Identities=10%  Similarity=-0.035  Sum_probs=180.8

Q ss_pred             CchhhhhhcccchHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHH
Q 021040           22 GRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVA  101 (318)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~  101 (318)
                      +|...+...++.+..........+.+|.+.++.|+|+.++|++.+.+.+...+.+++.|.++||+||||. +..+.++.+
T Consensus         7 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~-~~~~~~~~~   85 (390)
T PRK03545          7 AWLRVVTLALAAFIFNTTEFVPVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKL-LIGLFVLFI   85 (390)
T ss_pred             chHHHHHHHHHHHHHHhHHHHHHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHH-HHHHHHHHH
Confidence            3444555566655443333334445666666679999999999999999999999999999999999998 566777777


Q ss_pred             HHHHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHH
Q 021040          102 VSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYA  181 (318)
Q Consensus       102 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~  181 (318)
                      ++.....       +.+  +.+...+.    +++.+++.+...+...+++.|..+ ++||+++.++.+.+.++|..+++.
T Consensus        86 ~~~~~~~-------~~~--~~~~l~~~----r~~~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~g~~~~~~~~g~~ig~~  151 (390)
T PRK03545         86 ASHVLSA-------LAW--NFTVLLIS----RIGIAFAHAIFWSITASLAIRVAP-AGKKAQALSLLATGTALAMVLGLP  151 (390)
T ss_pred             HHHHHHH-------Hhc--cHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhCC-hhhhhhHHHHHHHHHHHHHHHHhh
Confidence            6654332       111  23322222    234566666666666778888875 578999999998888888877766


Q ss_pred             HHHHHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCCCchHHHHHHHHhcHHHHHHHHHHHH
Q 021040          182 IAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYML  261 (318)
Q Consensus       182 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (318)
                      +++.+.+          ..+||+.+++.++++++..+......||+++++     ++..++.++.+|||+++......++
T Consensus       152 l~~~l~~----------~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~  216 (390)
T PRK03545        152 LGRVIGQ----------YLGWRTTFLAIGGGALITLLLLIKLLPLLPSEH-----SGSLKSLPLLFRRPALVSLYLLTVV  216 (390)
T ss_pred             HHHHHHH----------HhcHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC-----cchHHHHHHHHhCcHHHHHHHHHHH
Confidence            5544432          257999998888777776666555566643221     1223456788999998877666666


Q ss_pred             HHHHHHHHHHHhHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 021040          262 TRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQVISLKL  313 (318)
Q Consensus       262 ~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~v~~~i~~~~~~~i~~~~  313 (318)
                      .........++.+.|++++.|.+....+.+.....++++++.++.+|++||.
T Consensus       217 ~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~  268 (390)
T PRK03545        217 VVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRH  268 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            6666666678889999988888876665555555566777777777777764

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.90  E-value=2.6e-21  Score=178.58  Aligned_cols=253  Identities=13%  Similarity=0.029  Sum_probs=180.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCc
Q 021040           36 NDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCR  115 (318)
Q Consensus        36 ~~~~~~~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~  115 (318)
                      .........+.+|.+.++.|.|+.++|++.++..+...+++++.|+++||+||||. +..+.++.+++......      
T Consensus        17 ~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~-~~~~~~~~~~~~~~~~~------   89 (385)
T TIGR00710        17 GPLGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPV-LLLGLFIFALSSLGLAL------   89 (385)
T ss_pred             HHHHHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHH-HHHHHHHHHHHHHHHHH------
Confidence            33444555566666666779999999999999999999999999999999999988 56677776666554421      


Q ss_pred             ccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcc
Q 021040          116 ILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTH  195 (318)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~  195 (318)
                       .+  +.+...    +.+++.+++.+...++..+++.|..+ +++|++..+..+....+|..+++.+++.+..       
T Consensus        90 -~~--~~~~~~----~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~-------  154 (385)
T TIGR00710        90 -SN--NIETLL----VLRFVQAFGASAGSVISQALVRDIYP-GEELSRIYSILMPVLALAPAVAPLLGGYILV-------  154 (385)
T ss_pred             -Hc--cHHHHH----HHHHHHHcchhHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence             11  122222    22345677777777778888899876 5789999999988888888877766654442       


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 021040          196 ADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAF  275 (318)
Q Consensus       196 ~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (318)
                         ..+|++.+++.+++.++..+...+..||++++++++++++..+.+++++|||+++...+...+..........+.|.
T Consensus       155 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (385)
T TIGR00710       155 ---WLSWHAIFAFLSLAGILLSALIFFILPETLPYEARIQISTYFETFLLLLKSKMFWGYALIYGASFGGFFAFFSGAPF  231 (385)
T ss_pred             ---HcCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccCCHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHcChH
Confidence               24688888877777666666666667776543322222334566788899999988887777777777777888899


Q ss_pred             hhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 021040          276 YVINDLRMGQSAKALVPAIIYICSFIVSILLQVISLKL  313 (318)
Q Consensus       276 yl~~~~g~~~~~~~~~~~~~~v~~~i~~~~~~~i~~~~  313 (318)
                      ++++++|.++...+.+.....++++++..+.+++.||.
T Consensus       232 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~  269 (385)
T TIGR00710       232 VYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKW  269 (385)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99988999887666555555556666666666666554

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.90  E-value=5.8e-21  Score=176.05  Aligned_cols=250  Identities=9%  Similarity=-0.017  Sum_probs=172.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCC
Q 021040           34 MLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMP  113 (318)
Q Consensus        34 ~~~~~~~~~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~  113 (318)
                      +.++..+....+.+|...+|.|+|+.+.|++.+.+.+..++++++.|.++||+|||+. +..+......+.....     
T Consensus         1 ~~~~~~~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~-~~~~~~~~~~~~~~~~-----   74 (368)
T TIGR00903         1 FASQAIWVTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWF-LFGSLATFAAAAGRLL-----   74 (368)
T ss_pred             ChhhHHHHHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHH-HHHHHHHHHHHHHHHH-----
Confidence            3567788878888888888889999999999999999999999999999999998876 4433333323221111     


Q ss_pred             CcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 021040          114 CRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAK  193 (318)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~  193 (318)
                         .. .+.....    +.+++.+++.+.. .+.....+|..+ ++||+++.++.+.+..+|.++++.++..+..     
T Consensus        75 ---~~-~~~~~l~----~~R~l~G~g~~~~-~~~~~~~~~~~~-~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~-----  139 (368)
T TIGR00903        75 ---DP-FNYEWLL----ACQLLAALGQPFL-LNAFAPAASQIR-EERRDLVISLLSFAMYLGIIFALAAGLKIYT-----  139 (368)
T ss_pred             ---Hh-ccHHHHH----HHHHHHHhHhHHH-HHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence               10 1222222    2234566666543 333444567776 5899999999999999999888777655543     


Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCC-CchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHH
Q 021040          194 THADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGN-SHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAY  272 (318)
Q Consensus       194 ~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (318)
                           ..+||+.+++.++++++..++..+.+||+++.++++.+ ++..+++++++|||.++.+...+++.....+...+|
T Consensus       140 -----~~gWr~~f~~~~~l~~~~~~~~~~~lp~~p~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~w  214 (368)
T TIGR00903       140 -----AGGLQLLIIPIAAVAAAGIILVLAALPALPFQAAEGFGFKDAVKEFGALAGRKDLWIIGAILGFGVALFDNLAIW  214 (368)
T ss_pred             -----ccchHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcchHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHH
Confidence                 25799999888888888877777888987543221111 112346789999999999999999999999999999


Q ss_pred             hHHhhhhccccccchhhHHHHHHH-HHHHHHHHHHHHHHH
Q 021040          273 LAFYVINDLRMGQSAKALVPAIIY-ICSFIVSILLQVISL  311 (318)
Q Consensus       273 ~~~yl~~~~g~~~~~~~~~~~~~~-v~~~i~~~~~~~i~~  311 (318)
                      +|.|+++ .|++.. .+....+.. .+.+..+++.||..|
T Consensus       215 lp~~L~~-~g~s~~-~~~~~~l~~~~g~~g~~~~~d~~~r  252 (368)
T TIGR00903       215 LEAALRP-AGLEDI-AGDAVALAILAGLIGVAVIPDRVAR  252 (368)
T ss_pred             HHHHHHH-CCCChH-HHHHHHHHHHHHHHHHHHhhHHhhh
Confidence            9999976 567653 233222222 233444566666643

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.90  E-value=1.4e-20  Score=171.88  Aligned_cols=263  Identities=16%  Similarity=0.114  Sum_probs=180.2

Q ss_pred             ccchHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCC
Q 021040           31 SGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGG  110 (318)
Q Consensus        31 ~~~~~~~~~~~~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~  110 (318)
                      .+.+...+...+....+|.|..+.+.++.++|++.++..+...+.+|+.|.++||+||||.+ ..+.++..++...... 
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~-~~~~~~~~~~~~~~~~-   83 (365)
T TIGR00900         6 AAQLISLIGTAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVM-IGADLIRAVLVAVLPF-   83 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHH-HHHHHHHHHHHHHHHH-
Confidence            34455666667777788888888899999999999999999999999999999999999985 5565555554433221 


Q ss_pred             CCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021040          111 CMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVS  190 (318)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~  190 (318)
                       .+  ..+..+.+...    +...+.+++.+...++..++++|..+ ++||++..++.+....+|.++++.+++.+..  
T Consensus        84 -~~--~~~~~~~~~~~----~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~--  153 (365)
T TIGR00900        84 -VA--LLGGLNIWQVY----VLAGILAIAQAFFTPAYQAMLPDLVP-EEQLTQANSLSQAVRSLFYIVGPGIGGLMYA--  153 (365)
T ss_pred             -HH--HcCCCcHHHHH----HHHHHHHHHHHHHHHHHHHHHHhcCC-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH--
Confidence             00  00111222222    22345677778778888899999986 5799999999999999999888777665553  


Q ss_pred             ccCcccchhHHHHHHHHHHHHHHHHHHHHHHh-cccccccccccCCC----CchHHHHHHHHhcHHHHHHHHHHHHHHHH
Q 021040          191 TAKTHADLENQYRWIAYSSIFIGCCFVGIFLS-RTEEPRLKMGLRGN----SHARISWAYWFKKILYYQVALVYMLTRLV  265 (318)
Q Consensus       191 ~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~-~~~e~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (318)
                              ..+|++.+++.++..++..+.... ..||++++++++.+    ++.++.+++++|||.++......++....
T Consensus       154 --------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (365)
T TIGR00900       154 --------TLGIKWAIWVDAVGFAISALLIVSVRIPELAASEIQALSNAVLRDTREGIKFVLKNPLLRTLLLLALLFNLV  225 (365)
T ss_pred             --------HhhHHHHHHHHHHHHHHHHHHHHhcccccCCCccccccchhHHHHHHhHHHHHHcCcHHHHHHHHHHHHHHH
Confidence                    257888887766555444333322 22333221111111    12345577888999998888777777776


Q ss_pred             HHHHH-HHhHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 021040          266 VNVSQ-AYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQVISLKL  313 (318)
Q Consensus       266 ~~~~~-~~~~~yl~~~~g~~~~~~~~~~~~~~v~~~i~~~~~~~i~~~~  313 (318)
                      ..... .+.|.|.++.+|.+..+.+.+.....++++++.++.+++.||.
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  274 (365)
T TIGR00900       226 FAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYF  274 (365)
T ss_pred             HHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            66555 7889999888888887666666666666677777777776664

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.89  E-value=1.4e-20  Score=170.98  Aligned_cols=269  Identities=11%  Similarity=-0.022  Sum_probs=211.3

Q ss_pred             CCCCCCCchhhhhhcccchHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHH
Q 021040           16 SFTQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGA   95 (318)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~   95 (318)
                      +.+++..+.+.+...++.|.......+..+.+|+.-+|+|+|..++|...+++.+..+++.|+...+.||+.|||. ++.
T Consensus         5 ~~~~~~~~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~l-Ll~   83 (394)
T COG2814           5 ATARKPMWLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRL-LLG   83 (394)
T ss_pred             ccccccchHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH-HHH
Confidence            3447777888999999999988888888899999999999999999999999999999999999999999999998 566


Q ss_pred             HHHHHHHHHHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHH
Q 021040           96 GSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVA  175 (318)
Q Consensus        96 g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g  175 (318)
                      ...+++++-....       ++++  ...+.+.+    ++.++..+.......+..+++.| +++|+++.+....+..++
T Consensus        84 ~l~lFi~~n~l~a-------lAp~--f~~Ll~aR----~~~g~a~G~f~~i~~~~a~~lvp-p~~~~~Aiaiv~~G~tlA  149 (394)
T COG2814          84 LLALFIVSNLLSA-------LAPS--FAVLLLAR----ALAGLAHGVFWSIAAALAARLVP-PGKRGRALALVFTGLTLA  149 (394)
T ss_pred             HHHHHHHHHHHHH-------Hhcc--HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHcC-ccchhhHHHHHHHHHHHH
Confidence            7777777755443       2222  33334444    44556666655556677788886 578999999888877777


Q ss_pred             HHHHHHHHHHHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCCCchHHHHHHHHhcHHHHHH
Q 021040          176 NLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQV  255 (318)
Q Consensus       176 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (318)
                      .++|    .|+-.++++      ..+||+.|+..+.+++++.+..+..+| +++.+  ++++....+..+++|+|..+..
T Consensus       150 ~v~G----vPLGt~ig~------~~GWR~~F~~ia~l~ll~~~~~~~~lP-~~~~~--~~~~~~~~~~~~~l~~p~v~~~  216 (394)
T COG2814         150 TVLG----VPLGTFLGQ------LFGWRATFLAIAVLALLALLLLWKLLP-PSEIS--GSLPGPLRTLLRLLRRPGVLLG  216 (394)
T ss_pred             HHHh----ccHHHHHHH------HhhHHHHHHHHHHHHHHHHHHHHHhCC-CccCC--CCCCcchhHHHHHhcCchHHHH
Confidence            6654    455555442      478999999999999988888888888 21111  1222333445678999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 021040          256 ALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQVISLK  312 (318)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~v~~~i~~~~~~~i~~~  312 (318)
                      ....++...+++...+|+..+++|..|++.+.+..+-.+.-+++++++.+.+|+.||
T Consensus       217 l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr  273 (394)
T COG2814         217 LLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR  273 (394)
T ss_pred             HHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence            999999999999999999999999999999888877777778888888888888887

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.89  E-value=2.2e-20  Score=173.86  Aligned_cols=261  Identities=13%  Similarity=0.014  Sum_probs=179.3

Q ss_pred             CchhhhhhcccchHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHH
Q 021040           22 GRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVA  101 (318)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~  101 (318)
                      .|+..+...++.+..........+.+|++.++.|.+++++|+..++..+...+++|+.|.++||+||||. +..+.++.+
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~-~~~~~~~~~   96 (394)
T PRK10213         18 NWSAVFSVAFCVACLIIVEFLPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYV-VILFAVLLT   96 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHH-HHHHHHHHH
Confidence            4444455555544444443344556777777789999999999999999999999999999999999998 566777777


Q ss_pred             HHHHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHH
Q 021040          102 VSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYA  181 (318)
Q Consensus       102 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~  181 (318)
                      ++.....       +.+  +.+..+    +.+.+.+++.+...+...++++|..+ +++|+++.+....+.++|..+++.
T Consensus        97 ~~~~~~~-------~~~--~~~~l~----~~r~l~G~~~g~~~~~~~~~i~~~~~-~~~~~~a~~~~~~~~~~g~~ig~~  162 (394)
T PRK10213         97 LSCLLVS-------FAN--SFSLLL----IGRACLGLALGGFWAMSASLTMRLVP-PRTVPKALSVIFGAVSIALVIAAP  162 (394)
T ss_pred             HHHHHHH-------HHC--hHHHHH----HHHHHHHHhhHHHHHHHHHHHHHHcC-HhHHHHHHHHHHHHHHHHHHHHHH
Confidence            7654332       111  223222    23345677777777777888888875 578999999988888888887776


Q ss_pred             HHHHHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCCCchHHHHHHHHhcHHHHHHHHHHHH
Q 021040          182 IAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYML  261 (318)
Q Consensus       182 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (318)
                      +++.+..          ..+|++.+++.+++++++.+......||+++++     ++..+..++.+|+|+++......++
T Consensus       163 l~~~l~~----------~~gw~~~f~~~~~l~~~~~l~~~~~~p~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~~~  227 (394)
T PRK10213        163 LGSFLGE----------LIGWRNVFNAAAVMGVLCIFWIIKSLPSLPGEP-----SHQKQNTFRLLQRPGVMAGMIAIFM  227 (394)
T ss_pred             HHHHHHh----------hcCHHHHHHHHHHHHHHHHHHHHHHCCCCCccc-----ccchhHHHHHhcCHHHHHHHHHHHH
Confidence            6654442          247999988877766665555444566643221     1122345678899999887766666


Q ss_pred             HHHHHHHHHHHhHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 021040          262 TRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQVISLK  312 (318)
Q Consensus       262 ~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~v~~~i~~~~~~~i~~~  312 (318)
                      .........++++.++.++.|.+....+..-....+++++++++.+++.||
T Consensus       228 ~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r  278 (394)
T PRK10213        228 SFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKR  278 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            666666666777444456678887666665555556777888888888777

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.89  E-value=7.8e-21  Score=179.12  Aligned_cols=257  Identities=14%  Similarity=0.053  Sum_probs=173.0

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCC
Q 021040           32 GHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGC  111 (318)
Q Consensus        32 ~~~~~~~~~~~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~  111 (318)
                      +.+...+.......+++.+.++.|+|..+.|++.+...+...+++++.|+++||+|||+. +.++.++.+++.....   
T Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~-~~~~~~~~~~~~~~~~---  106 (434)
T PRK11663         31 GYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYF-MGIGLIATGIINILFG---  106 (434)
T ss_pred             HHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchh-HHHHHHHHHHHHHHHH---
Confidence            333333333345566777777789999999999999999999999999999999999987 5677777777655332   


Q ss_pred             CCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 021040          112 MPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVST  191 (318)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~  191 (318)
                          +.+  +.+...+.    .++.+++.+...++..+++.+..+ +++|+++.++.+.+..+|..+++.+.+.+..   
T Consensus       107 ----~~~--~~~~l~~~----~~l~g~~~g~~~~~~~~~~~~~~~-~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~---  172 (434)
T PRK11663        107 ----FSS--SLWAFALL----WVLNAFFQGWGWPVCAKLLTAWYS-RTERGGWWAIWNTAHNVGGALIPLVVGAIAL---  172 (434)
T ss_pred             ----HHh--HHHHHHHH----HHHHHHHHHccchHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence                111  12222222    233455555555556677788775 5789999999998888888877665554432   


Q ss_pred             cCcccchhHHHHHHHHHHHHHHHHHHHHHHhccccccccc---c----c-------CCC----CchHHHHH-HHHhcHHH
Q 021040          192 AKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKM---G----L-------RGN----SHARISWA-YWFKKILY  252 (318)
Q Consensus       192 ~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~---~----~-------~~~----~~~~~~~~-~~~~~~~~  252 (318)
                             ..+||+.+++.++++++..+...+..||++++.   +    +       +++    .+.++.++ ..+|+|.+
T Consensus       173 -------~~gw~~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (434)
T PRK11663        173 -------HYGWRYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRHDALELAQQQEGAGLSRKEILTKYVLLNPYI  245 (434)
T ss_pred             -------cccHHHHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCcccccccccccchhccccCCChhhhHHHHHhcChHH
Confidence                   247999988877776665555555666654211   0    0       000    01112222 36678888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 021040          253 YQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQVISLKL  313 (318)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~v~~~i~~~~~~~i~~~~  313 (318)
                      +......++.........+|+|.|+++.+|++....+....+..+++.++.++.++++||+
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~  306 (434)
T PRK11663        246 WLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKL  306 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHh
Confidence            8888777777777777888999999988999876555555555566666677777776665

>TIGR00897 2A0118 polyol permease family

Probab=99.88  E-value=3e-20  Score=173.38  Aligned_cols=272  Identities=14%  Similarity=0.113  Sum_probs=168.8

Q ss_pred             CCCCchhhhhhc-ccchHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHH
Q 021040           19 QPVGRWSVLYYG-SGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGS   97 (318)
Q Consensus        19 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~   97 (318)
                      +|..+++.+... ++.+.........++++++++++.|.|+++.|++.+.+.+...+++|+.|+++||+||||. +..+.
T Consensus         7 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~-l~~~~   85 (402)
T TIGR00897         7 QKIGIPLNLLWGYIGVVVFMTGDGLEQGWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKT-MMIGL   85 (402)
T ss_pred             HHcCCCchhhHHHHHHHHHHHhhhhHHHhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHH-HHHHH
Confidence            677777765444 4556666776777889999998889999999999999999999999999999999999998 45677


Q ss_pred             HHHHHHHHHH-hCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHH
Q 021040           98 VLVAVSFSSV-FGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVAN  176 (318)
Q Consensus        98 ~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~  176 (318)
                      .+.+++.... ..     +... .+.+...+    .+.+.+++.+.......+.+.+..+ +++|+++.+..+.+.++|.
T Consensus        86 ~~~~~~~~~~~~~-----~~~~-~~~~~l~~----~~~i~G~g~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~~g~  154 (402)
T TIGR00897        86 LLWCVGHAAFIVF-----GLGH-ANYPLILL----FYGIRGLGYPLFAYSFLVWVVYNTK-QDNLSSAVGWFWAVYSIGI  154 (402)
T ss_pred             HHHHHHHHHHHHH-----hccC-ccHHHHHH----HHHHHHcchHHHHhHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHH
Confidence            7666664322 10     0111 11221122    2234556655554445556666654 5789999999888887775


Q ss_pred             -HHHHHHHHHHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhccccccccccc---CCCCchHHHHHHHHhcHHH
Q 021040          177 -LSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGL---RGNSHARISWAYWFKKILY  252 (318)
Q Consensus       177 -~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~~---~~~~~~~~~~~~~~~~~~~  252 (318)
                       +.++.+++.+...++     .....|++.+.     ..+..++..+..+|+++++++   ++..+.++.+++++|||.+
T Consensus       155 ~~~g~~~~~~l~~~~g-----~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (402)
T TIGR00897       155 GVFGSYYSSYAIPAFG-----EMNTLWSALAF-----VLTGGVIALFSNKDIFTPQHMQTREKFSELGKAATILFTNPNV  224 (402)
T ss_pred             HHHHHHHHHhcccccc-----hHHHHHHHHHH-----HHHHHHHHHhccCCCCCcccccCCcchhhHHHHHHHHHcChhH
Confidence             344444333322111     00112332221     112223333344443222111   1112234457788999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 021040          253 YQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQVISLKL  313 (318)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~v~~~i~~~~~~~i~~~~  313 (318)
                      +...+..++.........+|.|.|+++ +|++..+.+.+.....+++.++.+..++++||+
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~  284 (402)
T TIGR00897       225 LLGGMVRIINTIGLFGFAVFLPMFVAE-LGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKL  284 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            988888888777788888999999865 788876554444444455555555555555554

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.88  E-value=5.9e-20  Score=170.71  Aligned_cols=254  Identities=14%  Similarity=0.080  Sum_probs=172.3

Q ss_pred             chHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCC
Q 021040           33 HMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCM  112 (318)
Q Consensus        33 ~~~~~~~~~~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~  112 (318)
                      ............+.+|.+.++.|.|+.+.+++.++..+...+++++.|.++||+||||. +..+.+..+++......   
T Consensus        17 ~~~~~~~~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~-~~~~~~~~~~~~~~~~~---   92 (394)
T PRK11652         17 VAVGQMAQTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPV-ILVGMSIFILGTLVALF---   92 (394)
T ss_pred             HHHHHHHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHH-HHHHHHHHHHHHHHHHH---
Confidence            33444444555566677777789999999999999999999999999999999999987 55677666666543321   


Q ss_pred             CCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 021040          113 PCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTA  192 (318)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~  192 (318)
                          .+  +.....+    .+.+.+++.+...+....+..|..+ +++|+++.+..+.+..++..+++.+++.+.+    
T Consensus        93 ----~~--~~~~l~~----~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~----  157 (394)
T PRK11652         93 ----AH--SLTVLIA----ASAIQGLGTGVGGVMARTLPRDLYE-GTQLRHANSLLNMGILVSPLLAPLIGGLLTT----  157 (394)
T ss_pred             ----Hc--cHHHHHH----HHHHHHhhhhHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----
Confidence                11  1222222    2234555555544444556667654 4678888887777777776666555443332    


Q ss_pred             CcccchhHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHH
Q 021040          193 KTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAY  272 (318)
Q Consensus       193 ~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (318)
                            ..+|++.+++.++..++..++..++.||++++++  ++.+.++.+++++|||+++......+....+......+
T Consensus       158 ------~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (394)
T PRK11652        158 ------LFGWRACYLFLLLLGAGVTFSMARWMPETRPADA--RRTRVLASYRTLLSNRRFNCYLLMLIGTLAGIAVFEAC  229 (394)
T ss_pred             ------ccChHHHHHHHHHHHHHHHHHHHHhCCccCcccc--chhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHh
Confidence                  2468988887776666665555566787643322  22235677889999999887766666666566666777


Q ss_pred             hHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 021040          273 LAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQVISLKL  313 (318)
Q Consensus       273 ~~~yl~~~~g~~~~~~~~~~~~~~v~~~i~~~~~~~i~~~~  313 (318)
                      .+.++++.+|.++...+.+.....++.++++++.+|++||.
T Consensus       230 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~  270 (394)
T PRK11652        230 SGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF  270 (394)
T ss_pred             ChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88899988898877666665556677777888888887775

>PRK10133 L-fucose transporter; Provisional

Probab=99.88  E-value=1.6e-19  Score=170.33  Aligned_cols=295  Identities=12%  Similarity=-0.007  Sum_probs=186.0

Q ss_pred             cccccccCCCCCCCCCchhhhhhcccchHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhc
Q 021040            7 MNYDIENDDSFTQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRF   86 (318)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~   86 (318)
                      -+|.+.|+|+..+|-...-.....+..+...+.......++|.+-++.|+|+.+.|++.+.+.+...+++++.|.++||+
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~   88 (438)
T PRK10133          9 QSYRAVDKDAGQSRSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL   88 (438)
T ss_pred             hhhhccCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            35788878876666555554444555555556666666666666444699999999999999999999999999999999


Q ss_pred             cCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHH
Q 021040           87 GHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTS  166 (318)
Q Consensus        87 Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~  166 (318)
                      ||||. +..+.++.+++.....    +....+  +....    .+.+++.+++.+...+..++++.|.. ++++|....+
T Consensus        89 G~r~~-l~~g~~~~~~~~~l~~----~~~~a~--~~~~l----l~~r~l~G~g~g~~~~~~~~~v~~~~-~~~~~~~~~s  156 (438)
T PRK10133         89 SYKAG-IITGLFLYALGAALFW----PAAEIM--NYTLF----LVGLFIIAAGLGCLETAANPFVTVLG-PESSGHFRLN  156 (438)
T ss_pred             CcHHH-HHHHHHHHHHHHHHHH----HHHhcC--CHHHH----HHHHHHHHHHHHHHHhhHHHHHHHhC-ChhhHHHHHH
Confidence            99998 6778888888765431    101111  22222    22234677888888888888888764 4456666677


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccC----c---c-cch--------hHHHHHHHHHHH-HHHHHHHHHHHhccccccc
Q 021040          167 CRNAFTMVANLSLYAIAFIVFSVSTAK----T---H-ADL--------ENQYRWIAYSSI-FIGCCFVGIFLSRTEEPRL  229 (318)
Q Consensus       167 ~~~~~~~~g~~~~~~~~~~l~~~~~~~----~---~-~~~--------~~~~~~~~~i~~-~~~~l~~~~~~~~~~e~~~  229 (318)
                      ..+....+|..+++.++.++.......    .   . .+.        ..+|++.++... +...+..++.....||.++
T Consensus       157 ~~~~~~~~G~~~g~~~g~~l~~~~~~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~  236 (438)
T PRK10133        157 LAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQS  236 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCcccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence            778888888888887766554111000    0   0 000        024555554333 3333333333333454322


Q ss_pred             ccccC-CCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhHHhh-hhccccccchhhHHHHHHHHHHHHHHHHHH
Q 021040          230 KMGLR-GNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYV-INDLRMGQSAKALVPAIIYICSFIVSILLQ  307 (318)
Q Consensus       230 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl-~~~~g~~~~~~~~~~~~~~v~~~i~~~~~~  307 (318)
                      +++++ ++.+..+.+++++|||.++...+..++..........|.+.|+ ++.+|+++...+.......++.+++.++.+
T Consensus       237 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g  316 (438)
T PRK10133        237 DNHSDAKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGT  316 (438)
T ss_pred             cccccccccchhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11111 1223345678899999988777777777777777778889886 567899887666555555556666666666


Q ss_pred             HHHHhh
Q 021040          308 VISLKL  313 (318)
Q Consensus       308 ~i~~~~  313 (318)
                      ++.||.
T Consensus       317 ~l~~r~  322 (438)
T PRK10133        317 WLISRF  322 (438)
T ss_pred             HHHHHc
Confidence            666553

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.88  E-value=9.1e-20  Score=170.10  Aligned_cols=252  Identities=13%  Similarity=0.052  Sum_probs=171.1

Q ss_pred             HHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhc-----cCchHHHHHHHHHHHHHHHHHhCCC
Q 021040           37 DITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRF-----GHFKIWHGAGSVLVAVSFSSVFGGC  111 (318)
Q Consensus        37 ~~~~~~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~-----Grr~~~l~~g~~~~~i~~~~~~~~~  111 (318)
                      .+.......-+|.|+++.|+|.+++|++..+...  .+.+|++|+++||+     ||||+++.++.++.++++..+..  
T Consensus        12 ~~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~--   87 (402)
T PRK11902         12 GLPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAF--   87 (402)
T ss_pred             hhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHh--
Confidence            3444556677899999999999999999877776  48999999999999     99998888888888777665542  


Q ss_pred             CCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 021040          112 MPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVST  191 (318)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~  191 (318)
                      .+    +..+.+..+    +..++.+++.+..+++.+++++|..+ ++||+++.+++..+..+|.++++.++..+.+.  
T Consensus        88 ~~----~~~~~~~l~----~~~~~~~~~~~~~~~~~~al~~~~~~-~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~--  156 (402)
T PRK11902         88 CP----PHAALWPLA----GLAVLVAFLSASQDIVFDAYSTDVLH-PEERGAGAAVKVLGYRLAMLVSGGLALWLADR--  156 (402)
T ss_pred             cC----ccchHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhcC-hhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhc--
Confidence            11    111222111    11233456677788889999999975 57899999999988888888776655444321  


Q ss_pred             cCcccchhHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCC--CCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHH
Q 021040          192 AKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRG--NSHARISWAYWFKKILYYQVALVYMLTRLVVNVS  269 (318)
Q Consensus       192 ~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (318)
                             ..+||+.+++.+++.++..+. .++.||+++++++++  +++.++++++++|||.++..+...++........
T Consensus       157 -------~~gw~~~f~i~a~~~l~~~l~-~~~~~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~~~~~~~  228 (402)
T PRK11902        157 -------VLGWGNTYLLMAGLMLAGALT-TLWAPEPEVPARPPRSLGEAVVGPLRDFFSRRGAWALLLLIVLYKLGDAFA  228 (402)
T ss_pred             -------ccCHHHHHHHHHHHHHHHHHH-HHhcCCCcccccccchhHHHHHHHHHHHHhCcCHHHHHHHHHHHHhHHHHH
Confidence                   136898888877766555443 456677644322111  1234567889999999988777666666554444


Q ss_pred             HHHhHHhhhhccccccchhhHHHHH-----HHHHHHHHHHHHHHHHH
Q 021040          270 QAYLAFYVINDLRMGQSAKALVPAI-----IYICSFIVSILLQVISL  311 (318)
Q Consensus       270 ~~~~~~yl~~~~g~~~~~~~~~~~~-----~~v~~~i~~~~~~~i~~  311 (318)
                      ..+.+.++.+++|.++...+.+...     ..+++.+++.+.||+++
T Consensus       229 ~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~  275 (402)
T PRK11902        229 GSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGL  275 (402)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhH
Confidence            4566677888889887666554322     23455556666666654

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.88  E-value=3.9e-20  Score=169.73  Aligned_cols=266  Identities=10%  Similarity=0.035  Sum_probs=170.3

Q ss_pred             ccchHHHHHHHHHHHHHHHHHHH-hCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhC
Q 021040           31 SGHMLNDITAACWFTYLLLFLTD-IGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFG  109 (318)
Q Consensus        31 ~~~~~~~~~~~~~~~~l~~~l~~-~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~  109 (318)
                      ++.+.....+....+++|.++++ .|+|+.+.|++.++..+..++.+++.|.++||+||||. +..+.++.+++......
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~-~~~~~~~~~i~~~~~~~   86 (366)
T TIGR00886         8 FGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYT-TTLSLLLLAIPCLWAGL   86 (366)
T ss_pred             HHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHH-HHHHHHHHHHHHHHHHH
Confidence            33344445556666777766665 59999999999999999999999999999999999998 56777777777554321


Q ss_pred             CCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021040          110 GCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSV  189 (318)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~  189 (318)
                             .+. +.+...+.    +++.+++.+.. .+..+++.|..+ +++|+++.++.....++|..+++.+++++...
T Consensus        87 -------~~~-~~~~~~~~----~~~~g~~~~~~-~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~  152 (366)
T TIGR00886        87 -------AVQ-SYSVLLLL----RLFIGIAGGSF-ASCMPWISFFFP-KKIQGTALGLAAGWGNMGGGVAQFVMPPIIGS  152 (366)
T ss_pred             -------Hhh-hHHHHHHH----HHHHHHhchhh-HhHHHHHHHhcC-HhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence                   110 22222222    23455554433 345667788775 57899999998888888888887777666653


Q ss_pred             hccCcccchhHHHHHHH-HHHHHHHHHHHHHHHhcccccccccccCCC-----------CchHHHHHHHHhcHHHHHHHH
Q 021040          190 STAKTHADLENQYRWIA-YSSIFIGCCFVGIFLSRTEEPRLKMGLRGN-----------SHARISWAYWFKKILYYQVAL  257 (318)
Q Consensus       190 ~~~~~~~~~~~~~~~~~-~i~~~~~~l~~~~~~~~~~e~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~  257 (318)
                      +......+...+|+|.+ ++.+++..+..++.....+|++++++++++           ++..+..++.+++|+++...+
T Consensus       153 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (366)
T TIGR00886       153 LIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFVGADTPPGKPATGKLSFKGARWSVGTGALGDQLKVFRDRHTWILAL  232 (366)
T ss_pred             HHhcccccccccccchhHHHHHHHHHHHHHHHHHhcccCCcccccchhcccccccccccchhHHHHHHHHhccchhhHHH
Confidence            32100000123788888 444555555555555555554322111110           011125677889999988888


Q ss_pred             HHHHHHHHHHHHHHHhHHhhhhccccccchhhHHHHHHHHHHH----HHHHHHHHHHH
Q 021040          258 VYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSF----IVSILLQVISL  311 (318)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~v~~~----i~~~~~~~i~~  311 (318)
                      ..++.........++.|.|+++.+|.++...+.+..+..+.++    +++.+.||+++
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~  290 (366)
T TIGR00886       233 LYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGG  290 (366)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhcc
Confidence            7777777777888999999999999887655544433334444    44555555544

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.87  E-value=1.5e-19  Score=170.19  Aligned_cols=295  Identities=11%  Similarity=0.117  Sum_probs=174.6

Q ss_pred             CCcccccccccccCCCCCCCCCchhhhhhcccchHHHHHHHHHHHHHHHHHHHh----CCChhH---HHHHHHHHHHHHH
Q 021040            1 MTSSTVMNYDIENDDSFTQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDI----GLSPRG---AAAVMLSGQIADG   73 (318)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----gls~~~---~g~i~~~~~i~~~   73 (318)
                      |..+||-.|..-.-.+  ++.+++....-.++.+........ .++..+++.+.    +.+..+   .+.+++...+...
T Consensus         1 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (432)
T PRK10406          1 MAESTVTADSKLTSSD--TRRRIWAIVGASSGNLVEWFDFYV-YSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRP   77 (432)
T ss_pred             CCccccccccccCCCC--cHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHH
Confidence            5677776654432333  333333333333444443333333 45666666653    355554   3445555566666


Q ss_pred             HHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccch--hHHHHHHHHHHHHHHHHHhhhHHhHhhhc
Q 021040           74 FATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTL--KVETISYCVFAAIFNVGWAATQVAHMSMV  151 (318)
Q Consensus        74 i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  151 (318)
                      ++++++|+++||+||||. +..+.++++++......  .|     +...  ......+.+.+++.|++.+...+...+++
T Consensus        78 ig~~~~G~l~Dr~Grr~~-l~~~~~~~~~~~~~~~~--~~-----~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i  149 (432)
T PRK10406         78 IGGWLFGRIADKHGRKKS-MLISVCMMCFGSLVIAC--LP-----GYETIGTWAPALLLLARLFQGLSVGGEYGTSATYM  149 (432)
T ss_pred             HHHHHHHHHHHhcCcHHH-HHHHHHHHHHHHHHHhh--cC-----CchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHH
Confidence            999999999999999998 56788877777654421  12     1100  01112233444567788877777778888


Q ss_pred             cccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhccccccccc
Q 021040          152 NCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKM  231 (318)
Q Consensus       152 ~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~  231 (318)
                      .|..| +++|++..+..+.+...|.+++..+...+.....+..  ....+||+.|++.++++++.. ......||+++.+
T Consensus       150 ~e~~p-~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~--~~~~gWr~~F~i~~~~~ll~~-~~~~~~~e~~~~~  225 (432)
T PRK10406        150 SEVAV-EGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAE--LREWGWRIPFALGAVLAVVAL-WLRRQLDETSQQE  225 (432)
T ss_pred             HHhCC-CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH--HhccchHHHHHHHHHHHHHHH-HHHhcCCCCchHH
Confidence            99876 5789998888887777777766555433222111000  012579999987766665543 3334566654322


Q ss_pred             ccCCCCchHHHHHHHHhcHHHHHHHHHHHHH-HHHHHHHHHHhHHhhhhccccccchhhHHHH----HHHHHHHHHHHHH
Q 021040          232 GLRGNSHARISWAYWFKKILYYQVALVYMLT-RLVVNVSQAYLAFYVINDLRMGQSAKALVPA----IIYICSFIVSILL  306 (318)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~----~~~v~~~i~~~~~  306 (318)
                      +++  .+...++++++|||+++.......+. ....+...+|+|.|+++..|.+..+.+....    ...++..+.+.+.
T Consensus       226 ~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~  303 (432)
T PRK10406        226 TRA--LKEAGSLKGLWRNRRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALS  303 (432)
T ss_pred             Hhh--hcccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            111  11123577889999887766555543 5667778899999999988887644433222    2334445556666


Q ss_pred             HHHHHh
Q 021040          307 QVISLK  312 (318)
Q Consensus       307 ~~i~~~  312 (318)
                      ||++||
T Consensus       304 Dr~grr  309 (432)
T PRK10406        304 DKIGRR  309 (432)
T ss_pred             HHcCch
Confidence            666554

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.87  E-value=9.6e-20  Score=168.01  Aligned_cols=250  Identities=12%  Similarity=0.056  Sum_probs=175.0

Q ss_pred             HHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCccc
Q 021040           38 ITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRIL  117 (318)
Q Consensus        38 ~~~~~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~  117 (318)
                      +...+..+.++.+.++.|+|+.+++++.++..+...+++++.|.++||+|||+. +..+.++.+++......       .
T Consensus         5 ~~~~~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~-~~~~~~~~~i~~~~~~~-------~   76 (377)
T PRK11102          5 LAIDMYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPV-ILGGTLVFALAAVACAL-------A   76 (377)
T ss_pred             hHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHH-HHHHHHHHHHHHHHHHH-------H
Confidence            344566688888888889999999999999999999999999999999999887 56777777776554421       1


Q ss_pred             CccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccc
Q 021040          118 STSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHAD  197 (318)
Q Consensus       118 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~  197 (318)
                      +  +....    .+..++.+++.+...++..+++.|..+ +++|++..++.+....+|..+++.+++.+..         
T Consensus        77 ~--~~~~~----~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~---------  140 (377)
T PRK11102         77 Q--TIDQL----IYMRFLHGLAAAAASVVINALMRDMFP-KEEFSRMMSFVTLVMTIAPLLAPIIGGWLLV---------  140 (377)
T ss_pred             c--cHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence            1  12221    222345677777777777888888875 5789999999988888888777666544442         


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCC--CCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 021040          198 LENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRG--NSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAF  275 (318)
Q Consensus       198 ~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (318)
                       ..+|++.+++.+++.++..++..+..||+++++++++  .++..+++++++|+|+++..++...+...+......+.|.
T Consensus       141 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (377)
T PRK11102        141 -WFSWHAIFWVLALAAILAAALVFFFIPETLPKERRQPFHLRTTIRNFASLFRHKRVLGYMLASGFSFAGMFSFLTAGPF  219 (377)
T ss_pred             -HcChHHHHHHHHHHHHHHHHHHHHhCCccCcccccCCCChHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHcCHH
Confidence             2468888888777777666666666777643322111  1123456678889999888777777766666777778888


Q ss_pred             hhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 021040          276 YVINDLRMGQSAKALVPAIIYICSFIVSILLQVISLK  312 (318)
Q Consensus       276 yl~~~~g~~~~~~~~~~~~~~v~~~i~~~~~~~i~~~  312 (318)
                      ++.+..|.++.+.+.+-....++.+++..+.+++.||
T Consensus       220 ~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r  256 (377)
T PRK11102        220 VYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRR  256 (377)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888889887665554444444444444444444444

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.87  E-value=7.8e-20  Score=171.17  Aligned_cols=273  Identities=10%  Similarity=-0.025  Sum_probs=177.7

Q ss_pred             CCCchhhhhhcccchHHHHHHHHHHHHHHHHHH-HhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHH
Q 021040           20 PVGRWSVLYYGSGHMLNDITAACWFTYLLLFLT-DIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSV   98 (318)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~   98 (318)
                      |++|+..+...++.+.+......... ..+.++ |.|++++++|++.+++.+..++++++.|+++||+||||. +..+.+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~-~~~~~~   81 (412)
T TIGR02332         4 KLFRRLIIFLFILFIFSFLDRINIGF-AGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRW-IAGIMV   81 (412)
T ss_pred             eehhHHHHHHHHHHHHHHhhhhhHHH-HHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHH-HHHHHH
Confidence            44555555555554443444444443 344554 459999999999999999999999999999999999998 567777


Q ss_pred             HHHHHHHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHH
Q 021040           99 LVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLS  178 (318)
Q Consensus        99 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~  178 (318)
                      +.+++.....       +.++  .....+.    +.+.+++.+...+...+++.|..+ +++|+++.+..+.+..+|..+
T Consensus        82 ~~~~~~~~~~-------~~~~--~~~l~~~----r~l~G~~~~~~~~~~~~~~~~~~~-~~~rg~~~~~~~~~~~~g~~~  147 (412)
T TIGR02332        82 LWGIASTATM-------FATG--PESLYLL----RILVGIAEAGFLPGILLYLTFWFP-AYFRARANALFMIAMPVTMAL  147 (412)
T ss_pred             HHHHHHHHHH-------HhcC--HHHHHHH----HHHHHHHHhhHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHH
Confidence            7777655432       1222  2222222    345667777665555567788775 578999999999888888888


Q ss_pred             HHHHHHHHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhcccccccccc-----c-C---------------CC-
Q 021040          179 LYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMG-----L-R---------------GN-  236 (318)
Q Consensus       179 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~-----~-~---------------~~-  236 (318)
                      ++.+++.+...-.    .....+||+.+.+.++++++..++..+++||++++.+     + +               ++ 
T Consensus       148 ~~~~~~~l~~~~~----~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  223 (412)
T TIGR02332       148 GLILSGYILALDG----LMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKWLDEEDKKALKEMIDNDQLTLEQPEG  223 (412)
T ss_pred             HHHHHHHHHhCCC----CCCccchhHHHHHHHHHHHHHHHHHhhccCCCcccCCCCCHHHHHHHHHHHHhcccccccccc
Confidence            7776655542100    0002479999988888877776667777888653210     0 0               00 


Q ss_pred             ---C---chHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhc-cccccchhhHHHHHHHHHHHHHHHHHHHH
Q 021040          237 ---S---HARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVIND-LRMGQSAKALVPAIIYICSFIVSILLQVI  309 (318)
Q Consensus       237 ---~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~-~g~~~~~~~~~~~~~~v~~~i~~~~~~~i  309 (318)
                         .   ..++.+++++ +|.++...+.+++.........+|+|.|+++. .|.+....+.......++++++.++.+++
T Consensus       224 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l  302 (412)
T TIGR02332       224 AFAHAAMPQRSMLREIF-TPAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRH  302 (412)
T ss_pred             ccccccccHHHHHHHhc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHH
Confidence               0   0122344443 57788888888888888888999999999883 35665444444444455555555555555


Q ss_pred             HHhh
Q 021040          310 SLKL  313 (318)
Q Consensus       310 ~~~~  313 (318)
                      +||+
T Consensus       303 ~dr~  306 (412)
T TIGR02332       303 SDRL  306 (412)
T ss_pred             hccc
Confidence            5554

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.87  E-value=2.2e-19  Score=171.14  Aligned_cols=254  Identities=10%  Similarity=0.018  Sum_probs=162.8

Q ss_pred             HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccc
Q 021040           42 CWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTST  121 (318)
Q Consensus        42 ~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~  121 (318)
                      .+.++++.+.++.|++.++.|++.+...+...+++++.|+++||+|||+. +..+.+..+++.....       +.+  +
T Consensus        54 ~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~-~~~~~~~~~~~~~~~~-------~~~--s  123 (476)
T PLN00028         54 AAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYG-SAFLLMLTAPAVFCMS-------LVS--S  123 (476)
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHH-HHHHHHHHHHHHHHHH-------Hhc--C
Confidence            34455566666679999999999999999999999999999999999988 5667776666654332       111  2


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchhHH
Q 021040          122 LKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQ  201 (318)
Q Consensus       122 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~  201 (318)
                      .....+.    +++.+++.+... +...++.+..+ +++|+++.++.+...++|..+++.+.+.+...+...+ .+...+
T Consensus       124 ~~~l~~~----r~l~G~~~~~~~-~~~~~i~~~~~-~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~-~~~~~g  196 (476)
T PLN00028        124 ATGFIAV----RFFIGFSLATFV-SCQYWMSTMFN-GKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAG-APSFTA  196 (476)
T ss_pred             HHHHHHH----HHHHHHHHHhhH-HHHHHHHHhcC-hhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-Ccchhh
Confidence            2222222    234555554432 33445677775 5789999999887777787777666533333221100 001247


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhccccccccc--c--cC---CCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhH
Q 021040          202 YRWIAYSSIFIGCCFVGIFLSRTEEPRLKM--G--LR---GNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLA  274 (318)
Q Consensus       202 ~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~--~--~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (318)
                      ||+.+++.++++++..++..++.+++++++  +  ++   ++.+..+.+++.+++++++.+.+.+++.........+++|
T Consensus       197 Wr~~f~i~g~l~l~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  276 (476)
T PLN00028        197 WRIAFFVPGLLHIIMGILVLTLGQDLPDGNYRELKKSGTMPKDSFSKVLRYGVTNYRTWILALTYGYSFGVELTMDNIIA  276 (476)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHcCcCCCCchhhHHhcCccccccHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHhHHH
Confidence            999999888887777666655544433211  0  01   1112234567788899988887777666666666778899


Q ss_pred             HhhhhccccccchhhHHHH----HHHHHHHHHHHHHHHHHHh
Q 021040          275 FYVINDLRMGQSAKALVPA----IIYICSFIVSILLQVISLK  312 (318)
Q Consensus       275 ~yl~~~~g~~~~~~~~~~~----~~~v~~~i~~~~~~~i~~~  312 (318)
                      .|+.+..|++....+.+..    ...++.++++++.||+++|
T Consensus       277 ~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r  318 (476)
T PLN00028        277 EYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARR  318 (476)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh
Confidence            9999988998755444443    3445556666666666654

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.87  E-value=1.1e-19  Score=170.20  Aligned_cols=253  Identities=11%  Similarity=0.043  Sum_probs=173.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCC
Q 021040           34 MLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMP  113 (318)
Q Consensus        34 ~~~~~~~~~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~  113 (318)
                      +...+...+..+-+|..-++.|.+.++.++..+++.+..++++++.|.++||+||||. +..+..+.+++.....     
T Consensus        26 ~~~~~~~~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~-l~~~~~~~~~~~~~~~-----   99 (413)
T PRK15403         26 FAAYLTTDLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPV-LITGALIFTLACAATL-----   99 (413)
T ss_pred             HHHHHHHHhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHH-HHHHHHHHHHHHHHHH-----
Confidence            3333444444455555445569999999999999999999999999999999999998 5667777776654332     


Q ss_pred             CcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 021040          114 CRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAK  193 (318)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~  193 (318)
                        +.+  +.....+.    +++.+++.+.......+.+.|..+ +++|++..++.+....+|..+++.+++.+..     
T Consensus       100 --~a~--~~~~l~~~----r~l~Gi~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~-----  165 (413)
T PRK15403        100 --FTT--SMTQFLIA----RFIQGTSICFIATVGYVTVQEAFG-QTKGIKLMAIITSIVLVAPIIGPLSGAALMH-----  165 (413)
T ss_pred             --HcC--CHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence              122  22322222    234555555444444566677764 5778888888888878887777666544432     


Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHhcccccccccccC-CCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHH
Q 021040          194 THADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLR-GNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAY  272 (318)
Q Consensus       194 ~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (318)
                           ..+|++.+++.++++++..+...+..||++++++++ ++.+..+++++++|||.++...+...+..........+
T Consensus       166 -----~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~  240 (413)
T PRK15403        166 -----FVHWKVLFAIIAVMGLIAFVGLLLAMPETVKRGAVPFSAKSVLRDFRNVFRNRLFLTGAATLSLSYIPMMSWVAV  240 (413)
T ss_pred             -----hcCHHHHHHHHHHHHHHHHHHHHHhCCCCccccCCCCChHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHh
Confidence                 247999998888777776665556678864332211 12234567889999999999888888877777777788


Q ss_pred             hHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 021040          273 LAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQVISL  311 (318)
Q Consensus       273 ~~~yl~~~~g~~~~~~~~~~~~~~v~~~i~~~~~~~i~~  311 (318)
                      .|.++++..|.+....+........++++++.+.+|+.+
T Consensus       241 ~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~  279 (413)
T PRK15403        241 SPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVK  279 (413)
T ss_pred             ChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            899999999998876666554455666666666666553

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.87  E-value=1.1e-19  Score=167.12  Aligned_cols=253  Identities=11%  Similarity=-0.022  Sum_probs=158.7

Q ss_pred             chHHHHHHHHHHHHHHHHHHH-hCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCC
Q 021040           33 HMLNDITAACWFTYLLLFLTD-IGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGC  111 (318)
Q Consensus        33 ~~~~~~~~~~~~~~l~~~l~~-~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~  111 (318)
                      .+...+...+..+++++|+++ .|.|+.++|++.+++.+...+.+|+.|.++||+||||+++..+.+..+++.....   
T Consensus         6 ~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~---   82 (375)
T TIGR00899         6 AFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFA---   82 (375)
T ss_pred             HHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHH---
Confidence            445566677788999999876 5999999999999999999999999999999999999865555555444433222   


Q ss_pred             CCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHH--HHHHHHHHHHHHHHHHHHHHHHHHh
Q 021040          112 MPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVL--TSCRNAFTMVANLSLYAIAFIVFSV  189 (318)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~--~~~~~~~~~~g~~~~~~~~~~l~~~  189 (318)
                          +++  +.+...+.    ..+.+.+.+...+...++..|..+ +++|...  .+....+.++|..+++.+++.+.+ 
T Consensus        83 ----~~~--~~~~l~~~----~~~~g~~~~~~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~-  150 (375)
T TIGR00899        83 ----WNR--NYFLLLVL----GVLLSSFASTANPQLFALAREHAD-RTGREAVMFSSVMRAQISLAWVIGPPLAFWLAL-  150 (375)
T ss_pred             ----hcc--hHHHHHHH----HHHHHhhhhhhHHHHHHHHHHHhh-hcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHH-
Confidence                111  22222211    223333334444445566666654 3445432  455566666777766655444432 


Q ss_pred             hccCcccchhHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHH
Q 021040          190 STAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVS  269 (318)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (318)
                               ..+|++.+++.+++.++..++..+.+||+++++++++   ...+.++.+|+|+++......++........
T Consensus       151 ---------~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (375)
T TIGR00899       151 ---------GFGFTVMFLTAALAFVLCGVLVWLFLPSYPRGAPGAL---TRLEVRGLLASRDTRLLFVACTLMWGCNILY  218 (375)
T ss_pred             ---------hcccHHHHHHHHHHHHHHHHHHHHhCCCcccCccccc---CcchhhhhhcCcchHHHHHHHHHHHHHHHHH
Confidence                     2479999988887777666666666787644322111   1233456778888877666666655555566


Q ss_pred             HHHhHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 021040          270 QAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQVISLK  312 (318)
Q Consensus       270 ~~~~~~yl~~~~g~~~~~~~~~~~~~~v~~~i~~~~~~~i~~~  312 (318)
                      ..++|.|++++.|.++...+.+.....+...++..+.+++.||
T Consensus       219 ~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r  261 (375)
T TIGR00899       219 IINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKR  261 (375)
T ss_pred             HhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            6788999999889887655544333333333344444444444

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.87  E-value=1e-19  Score=167.37  Aligned_cols=241  Identities=13%  Similarity=0.098  Sum_probs=169.6

Q ss_pred             HHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccchhHHH
Q 021040           47 LLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVET  126 (318)
Q Consensus        47 l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  126 (318)
                      .|.+.++.|++..+.|++.++..+...+++++.|.++||+||||. +..+.++.+++......       .+  +.+.. 
T Consensus        17 ~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~-~~~~~~~~~~~~~~~~~-------~~--~~~~~-   85 (399)
T TIGR00893        17 APMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKT-LAVFIVIWGVFTGLQAF-------AG--AYVSL-   85 (399)
T ss_pred             HHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCccee-eHHHHHHHHHHHHHHHH-------Hc--CHHHH-
Confidence            344444459999999999999999999999999999999999998 45677666666543321       11  12222 


Q ss_pred             HHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchhHHHHHHH
Q 021040          127 ISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIA  206 (318)
Q Consensus       127 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  206 (318)
                         .+.+++.+++.+...+...+++.|..+ +++|++..++.+....+|.++++.+++.+..          ..+|++.+
T Consensus        86 ---~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~----------~~~~~~~~  151 (399)
T TIGR00893        86 ---YILRVLLGAAEAPFFPGIILIVASWFP-ASERATAVSIFNSAQGLGGIIGGPLVGWILI----------HFSWQWAF  151 (399)
T ss_pred             ---HHHHHHHHHHHHhhhhHHHHHHHHhCC-HHHHHHHHHHHHHhchHHHHHHHHHHHHHHH----------hCCchHHH
Confidence               222345777777777777888888875 5789999999999988888877666544432          24688888


Q ss_pred             HHHHHHHHHHHHHHHhcccccccccc-----cC---------------CCCchHHHHHHHHhcHHHHHHHHHHHHHHHHH
Q 021040          207 YSSIFIGCCFVGIFLSRTEEPRLKMG-----LR---------------GNSHARISWAYWFKKILYYQVALVYMLTRLVV  266 (318)
Q Consensus       207 ~i~~~~~~l~~~~~~~~~~e~~~~~~-----~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (318)
                      .+.+++.++..++..+..||++++++     ++               +++..++..++.+|+|+++......++.....
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (399)
T TIGR00893       152 IIEGVLGIIWGVLWLKFIPDPPQKAKWLTEEEKYIVVGGLLAEQQGKGPSTPKKYQIKELLKDRRVWGLALGQFLVNIGL  231 (399)
T ss_pred             HHHHHHHHHHHHHhhheecCCCCccccCCHHHHhhcchhhccccccccccCCCccchHHHhcCHHHHHHHHHHHHHHhHH
Confidence            88777777666666666666543210     00               00112334678899999999988888888888


Q ss_pred             HHHHHHhHHhhhhccccccchhhHHHHH----HHHHHHHHHHHHHHHHHh
Q 021040          267 NVSQAYLAFYVINDLRMGQSAKALVPAI----IYICSFIVSILLQVISLK  312 (318)
Q Consensus       267 ~~~~~~~~~yl~~~~g~~~~~~~~~~~~----~~v~~~i~~~~~~~i~~~  312 (318)
                      .....++|.|+++..|.+....+.+...    ..++..+++.+.||+++|
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  281 (399)
T TIGR00893       232 GFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRR  281 (399)
T ss_pred             HHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            8999999999999999886554444333    334555666666666665

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.87  E-value=1e-19  Score=169.85  Aligned_cols=261  Identities=11%  Similarity=0.054  Sum_probs=173.4

Q ss_pred             hhcccchHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHH
Q 021040           28 YYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSV  107 (318)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~  107 (318)
                      ...++.+.+.....+..+.++.+.++.|.|+.+.++..+.+.+...+.+++.|.++||+||||. +..+.+..+++....
T Consensus        17 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~-l~~~~~~~~~~~~~~   95 (406)
T PRK15402         17 CLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPV-MLAGVAFFILTCLAI   95 (406)
T ss_pred             HHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHH-HHHHHHHHHHHHHHH
Confidence            3334444444556666677777667779999999999999999999999999999999999998 566776666665543


Q ss_pred             hCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021040          108 FGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVF  187 (318)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~  187 (318)
                      ..       .+  +......    .+.+.+++.+...+...+.+.|..+ +++|.+..+.......++..+++.+++.+.
T Consensus        96 ~~-------~~--~~~~l~~----~~~l~G~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~  161 (406)
T PRK15402         96 LL-------AQ--SIEQFTL----LRFLQGIGLCFIGAVGYAAIQESFE-EADAIKITALMANVALLAPLLGPLVGAALI  161 (406)
T ss_pred             HH-------Hc--cHHHHHH----HHHHHHhHhhhHHHHHHHHHHHHhC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            21       11  1222222    2234555555555555666777765 467777777766665666665555443333


Q ss_pred             HhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhcccccccccccC-CCCchHHHHHHHHhcHHHHHHHHHHHHHHHHH
Q 021040          188 SVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLR-GNSHARISWAYWFKKILYYQVALVYMLTRLVV  266 (318)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (318)
                      +          ..+|++.+++.+++..+..+...+..||++++++++ +.++..+++++++|||+++...+...+.....
T Consensus       162 ~----------~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (406)
T PRK15402        162 H----------VLPWRGMFVLFAALAALSFFGLWRAMPETAGRVGEKLSLKELGRDYKLVLKNRRFVAGALALGLVSLPL  231 (406)
T ss_pred             H----------ccCccHHHHHHHHHHHHHHHHHHHhCCCCCccccccccHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH
Confidence            2          246888888877777666665556667764332111 11234567788999999988877776666666


Q ss_pred             HHHHHHhHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 021040          267 NVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQVISLKL  313 (318)
Q Consensus       267 ~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~v~~~i~~~~~~~i~~~~  313 (318)
                      ....++.|.|+.+.+|.++.+.+.......++++++..+.++++||.
T Consensus       232 ~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~  278 (406)
T PRK15402        232 LAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRR  278 (406)
T ss_pred             HHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            66677789999888898876655554444556666666777776664

>TIGR00901 2A0125 AmpG-related permease

Probab=99.87  E-value=1.5e-19  Score=165.61  Aligned_cols=254  Identities=14%  Similarity=0.088  Sum_probs=171.0

Q ss_pred             HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhc-----cCchHHHHHHHHHHHHHHHHHhCCCCCCccc
Q 021040           43 WFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRF-----GHFKIWHGAGSVLVAVSFSSVFGGCMPCRIL  117 (318)
Q Consensus        43 ~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~-----Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~  117 (318)
                      ..+.+|.+.+|.|+|.+++|+.... .+...+ ++++|.++||+     ||||+++..+.+..++++..+.+  .+    
T Consensus         7 ~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~--~~----   78 (356)
T TIGR00901         7 VGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSF--LV----   78 (356)
T ss_pred             HHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHc--CC----
Confidence            4456778888889999999999766 344444 99999999997     99999877777777776544422  11    


Q ss_pred             CccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccc
Q 021040          118 STSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHAD  197 (318)
Q Consensus       118 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~  197 (318)
                      +..+.+...    ...++.+.+.+...++..++++|.++ +|+|+++.+++..+..+|.++++.+++.+....+..+.  
T Consensus        79 ~~~~l~~l~----~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~--  151 (356)
T TIGR00901        79 PSTDLPLLA----GLAFLIAFFSATQDIALDAWRLEILS-DEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTG--  151 (356)
T ss_pred             cchhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhCC-HhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc--
Confidence            111222111    11233456667778889999999985 58999999999999999998887777665544331100  


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhcccccccccccC--CCCchHHHHHHHHhcHH---HHHHHHHHHHHHHHHHHHHHH
Q 021040          198 LENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLR--GNSHARISWAYWFKKIL---YYQVALVYMLTRLVVNVSQAY  272 (318)
Q Consensus       198 ~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~~~--~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~  272 (318)
                      ...+||+.+++.++..++..++.++..||++++++++  ++++.++.+++++|||.   ++...+..++.........++
T Consensus       152 ~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (356)
T TIGR00901       152 LITLWGYIFFWTALLILPGLLVTLFLAKEPQEDASVPKPLTQAVLKPIREFFQRKNMIQALLLLLLIVLYKLGDSAATVL  231 (356)
T ss_pred             cccccHHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHH
Confidence            1234898888877766665555554567754321111  11223456788888875   777777777778888888899


Q ss_pred             hHHhhhhccccccchhhHHHH-----HHHHHHHHHHHHHHHHHHh
Q 021040          273 LAFYVINDLRMGQSAKALVPA-----IIYICSFIVSILLQVISLK  312 (318)
Q Consensus       273 ~~~yl~~~~g~~~~~~~~~~~-----~~~v~~~i~~~~~~~i~~~  312 (318)
                      +|.|+++ .|.++.+.+.+-.     ...++.++++.+.||+++|
T Consensus       232 ~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~  275 (356)
T TIGR00901       232 TTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNIL  275 (356)
T ss_pred             HHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence            9999998 8888765543332     2335667777777777754

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.87  E-value=3.1e-19  Score=166.55  Aligned_cols=252  Identities=13%  Similarity=0.028  Sum_probs=171.2

Q ss_pred             ccchHHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhC
Q 021040           31 SGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFG  109 (318)
Q Consensus        31 ~~~~~~~~~~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~  109 (318)
                      ..++..........++++.|+++. |.|+.++|++.+...+...+.+|+.|+++||+||||. +..+.++.+++......
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~-l~~~~~~~~~~~~~~~~   95 (400)
T PRK11646         17 IDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPM-IVTGMLMRAAGFATMAI   95 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHH-HHHHHHHHHHHHHHHHH
Confidence            444555666677889999998775 9999999999999999999999999999999999888 56787777777654421


Q ss_pred             CCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021040          110 GCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSV  189 (318)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~  189 (318)
                             .+  +.+...+    ..++.+++.+...++..+++.|..+ +++|+++.++.+...++|..+++.+++.+.  
T Consensus        96 -------~~--~~~~l~~----~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~--  159 (400)
T PRK11646         96 -------AH--EPWLLWL----SCILSGLGGTLFDPPRTALVIKLIR-PHQRGRFFSLLMMQDSAGAVIGALLGSWLL--  159 (400)
T ss_pred             -------hc--cHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence                   11  2232222    2234566666666777788888875 578999999999999999888877765554  


Q ss_pred             hccCcccchhHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHH
Q 021040          190 STAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVS  269 (318)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (318)
                               ..+|++.+++.++..++..++.....||+++++   .+++.++++++++|||+++..+...+.........
T Consensus       160 ---------~~g~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (400)
T PRK11646        160 ---------QYDFRLVCATGAVLFVLAAAFNAWLLPAYKLST---VRTPVREGMTRVLRDKRFVTYVLTLTGYYMLAVQV  227 (400)
T ss_pred             ---------HhhHHHHHHHHHHHHHHHHHHHHHhCCcccccc---cchhhHHHHHHHHcCchHHHHHHHHHHHHHHHHHH
Confidence                     147888888777666665555445556542211   12234567788999999887665555444444445


Q ss_pred             HHHhHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 021040          270 QAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQVISLK  312 (318)
Q Consensus       270 ~~~~~~yl~~~~g~~~~~~~~~~~~~~v~~~i~~~~~~~i~~~  312 (318)
                      ..++|.|+++..+ ++...+.+..+..+.+.......+++.+|
T Consensus       228 ~~~~p~~~~~~~~-~~~~~g~l~~~~~~~~~~~~~~~~~~~~~  269 (400)
T PRK11646        228 MLMLPIMVNDIAG-SPSAVKWMYAIEACLSLTLLYPIARWSEK  269 (400)
T ss_pred             HHhhhhhHHhhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6788999988766 44444444333333344333334444433

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.87  E-value=3.4e-19  Score=165.52  Aligned_cols=252  Identities=12%  Similarity=0.066  Sum_probs=170.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCc
Q 021040           36 NDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCR  115 (318)
Q Consensus        36 ~~~~~~~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~  115 (318)
                      .........+.+|.+.++.|.+..+.+++.+.+.+...+++|+.|+++||+||||. +..+.++.+++......      
T Consensus        15 ~~~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~-l~~~~~~~~i~~~~~~~------   87 (392)
T PRK10473         15 YPAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPV-AIPGAALFIIASLLCSL------   87 (392)
T ss_pred             HHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHH-HHHHHHHHHHHHHHHHH------
Confidence            34444555566777777789999999999999999999999999999999999887 56777777777654431      


Q ss_pred             ccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcc
Q 021040          116 ILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTH  195 (318)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~  195 (318)
                       .+  +.....+.    +++.+++.+...+...+++.|..+ +++|++..+..+....+|..+++.+++.+..       
T Consensus        88 -~~--~~~~~~~~----~~l~g~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~-------  152 (392)
T PRK10473         88 -AE--TSSLFLAG----RFLQGIGAGCCYVVAFAILRDTLD-DRRRAKVLSLLNGITCIIPVLAPVLGHLIML-------  152 (392)
T ss_pred             -hC--cHHHHHHH----HHHHHhhhhHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------
Confidence             11  12222222    234566666666666778888775 5789999999888877777666555443332       


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 021040          196 ADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAF  275 (318)
Q Consensus       196 ~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (318)
                         ..+|++.+++.++++.+..++.....||++++++ +++.+..+..++.+|||+++.......+..........+.|.
T Consensus       153 ---~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (392)
T PRK10473        153 ---KFPWQSLFYTMAAMGILVLLLSLFILKETRPARA-PAASSKPRENSESLLNRFFLSRLVITTLSVTVILTFVNTSPV  228 (392)
T ss_pred             ---CcChHHHHHHHHHHHHHHHHHHHHHcCCCCCccc-CCccchHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCHH
Confidence               2468888888887777777766677787654322 222233455677889998877666555555555556667788


Q ss_pred             hhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 021040          276 YVINDLRMGQSAKALVPAIIYICSFIVSILLQVISLKL  313 (318)
Q Consensus       276 yl~~~~g~~~~~~~~~~~~~~v~~~i~~~~~~~i~~~~  313 (318)
                      ++.+++|.++...+.+.....+.++++..+.+++.||+
T Consensus       229 ~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~  266 (392)
T PRK10473        229 LLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIF  266 (392)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            88888898876555444444455555555555555553

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.87  E-value=1.7e-20  Score=178.40  Aligned_cols=252  Identities=12%  Similarity=0.012  Sum_probs=164.7

Q ss_pred             HHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccchhH
Q 021040           45 TYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKV  124 (318)
Q Consensus        45 ~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~  124 (318)
                      ...+...+|+|++.++.|++.+.+.+..++++|+.|+++||+||||. +..+.+..++.......  .+++..+  +...
T Consensus        50 ~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~-l~~~~~~~~~~~~~~~~--~~~~~~~--~~~~  124 (467)
T PRK09556         50 AAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQF-LPFLLILSAICMLGFGA--SLGSGSV--SLGL  124 (467)
T ss_pred             hhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccch-HHHHHHHHHHHHHHHHH--HHhcccc--hHHH
Confidence            34566566679999999999999999999999999999999999998 45566665555432211  2222221  2222


Q ss_pred             HHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchhHHHHH
Q 021040          125 ETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRW  204 (318)
Q Consensus       125 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  204 (318)
                      ..    +.+++.|++.+...++..+++.+..+ ++||+++.++.+.+.++|.++++.+...+.....       ..+|+.
T Consensus       125 l~----~~r~l~G~~~~~~~~~~~~~i~~~~~-~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~-------~~~~~~  192 (467)
T PRK09556        125 MI----ALWALSGFFQSTGGPCSYSTITRWTP-RRKRGRFLGFWNISHNLGGAGAGGVALWGANYFF-------DGHVIG  192 (467)
T ss_pred             HH----HHHHHHHHHHhccchHHHHHHHHHcC-ccceeeeEEeeecccchhhhHHHHHHHHHHHhhc-------cCcchh
Confidence            22    22345667666666666778888876 5789999999888888888877665433332211       024777


Q ss_pred             HHHHHHHHHHHHHHHHHhccccccccc-----c-----c---CC----C--CchHHHH-HHHHhcHHHHHHHHHHHHHHH
Q 021040          205 IAYSSIFIGCCFVGIFLSRTEEPRLKM-----G-----L---RG----N--SHARISW-AYWFKKILYYQVALVYMLTRL  264 (318)
Q Consensus       205 ~~~i~~~~~~l~~~~~~~~~~e~~~~~-----~-----~---~~----~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  264 (318)
                      .+.+.++++++.+++.++..+|++++.     +     +   ++    +  .+..+.+ ++.+|||.++...+..++...
T Consensus       193 ~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  272 (467)
T PRK09556        193 MFIFPSIIALIIGFIGLRYGSDSPEELGWGKAEEIFGEPISEEDKETESTDMTKWQIFVEYVLKNPVIWLLCFANIFLYI  272 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCChhhcCCCChhhcccCccchhhhccccccCcHHHHHHHHHHcChHHHHHHHHHHHHHH
Confidence            777777777766666666665543210     0     0   00    0  0111222 347899999999888888888


Q ss_pred             HHHHHHHHhHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 021040          265 VVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQVISLKL  313 (318)
Q Consensus       265 ~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~v~~~i~~~~~~~i~~~~  313 (318)
                      ......+|+|.|+++.+|++....+.......++++++..+.++++||+
T Consensus       273 ~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~  321 (467)
T PRK09556        273 VRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLA  321 (467)
T ss_pred             HHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8878889999999999999876554444444444555555555555543

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.86  E-value=9.6e-20  Score=172.57  Aligned_cols=247  Identities=14%  Similarity=0.067  Sum_probs=156.7

Q ss_pred             HHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccchhHH
Q 021040           46 YLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVE  125 (318)
Q Consensus        46 ~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  125 (318)
                      +..+++.+.|+++.+.|++.+...+..++++|+.|+++||+||||. +.++.++.+++......  .+.   ...+....
T Consensus        50 ~~~p~l~~~g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~-l~~~~~~~~i~~~~~~~--~~~---~~~~~~~~  123 (452)
T PRK11273         50 LAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVF-LPAGLILAAAVMLFMGF--VPW---ATSSIAVM  123 (452)
T ss_pred             HhhHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchh-HHHHHHHHHHHHHHHHh--hhc---ccccHHHH
Confidence            3445565559999999999999999999999999999999999997 56677776666553321  110   01112211


Q ss_pred             HHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH-hhccCcccchhHHHHH
Q 021040          126 TISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFS-VSTAKTHADLENQYRW  204 (318)
Q Consensus       126 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~  204 (318)
                      .+.    ..+.+++.+...++....+.+..+ +++|+++.++.+.+.++|..+.    +++.. ...      ...+|++
T Consensus       124 ~~~----~~l~gi~~g~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~----~~l~~~~~~------~~~gw~~  188 (452)
T PRK11273        124 FVL----LFLCGWFQGMGWPPCGRTMVHWWS-QKERGGIVSVWNCAHNVGGGLP----PLLFLLGMA------WFNDWHA  188 (452)
T ss_pred             HHH----HHHHHHHHhccchHHHHHHHHhCC-hHHHHHHHHHHHHHHHhhhhHH----HHHHHHHHH------HhccHHH
Confidence            222    234555555555555556667665 5789999998888777765332    22221 111      0247999


Q ss_pred             HHHHHHHHHHHHHHHHHhccccccccc----cc-----------C---CCCchHHHH-HHHHhcHHHHHHHHHHHHHHHH
Q 021040          205 IAYSSIFIGCCFVGIFLSRTEEPRLKM----GL-----------R---GNSHARISW-AYWFKKILYYQVALVYMLTRLV  265 (318)
Q Consensus       205 ~~~i~~~~~~l~~~~~~~~~~e~~~~~----~~-----------~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  265 (318)
                      .+++.+++.++..++..++.||++++.    ++           +   ++.+.++.+ +.++|||.++...+..++.+..
T Consensus       189 ~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  268 (452)
T PRK11273        189 ALYMPAFAAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKHEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLL  268 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHccCCHhhcCCCChhhhhhccccccccccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHH
Confidence            998887777776666667777754320    00           0   001112222 3477899999988888888887


Q ss_pred             HHHHHHHhHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 021040          266 VNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQVISLKL  313 (318)
Q Consensus       266 ~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~v~~~i~~~~~~~i~~~~  313 (318)
                      .+...+|+|.|++++.|++....+....+..++++++.++.++++||.
T Consensus       269 ~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~  316 (452)
T PRK11273        269 RYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV  316 (452)
T ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            788889999999999888865544433333344444444444444444

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.86  E-value=5.1e-19  Score=169.21  Aligned_cols=265  Identities=14%  Similarity=0.081  Sum_probs=176.0

Q ss_pred             hhhhhhcccchHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhc-----cCchHHHHHHHH
Q 021040           24 WSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRF-----GHFKIWHGAGSV   98 (318)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~-----Grr~~~l~~g~~   98 (318)
                      ++.+.+....+...+......+.++.++++.|.|..++|....+....  +.++++|.++||+     ||||+|+..+.+
T Consensus        12 ~~~~~~~~l~~~~gl~~~~~~~~l~~~l~~~g~~~~~ig~~~~~~~~~--~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i   89 (491)
T PRK11010         12 PNSAILLILGFASGLPLALTSGTLQAWMTVENIDLKTIGFFSLVGQAY--VFKFLWSPLMDRYTPPFLGRRRGWLLATQL   89 (491)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHcccccCCCCchHHHHHHHH
Confidence            334444444445556666777888999999999999999974444432  6899999999998     999998888887


Q ss_pred             HHHHHHHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHH
Q 021040           99 LVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLS  178 (318)
Q Consensus        99 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~  178 (318)
                      ..+++...+..  .+    +..+......    ..++.+++.+..+++..++..|..+ ++||++..++...+..+|.++
T Consensus        90 ~~~~~~~~~a~--~~----~~~~l~~l~~----~~~l~~~~~a~~~i~~~a~~~~~~~-~~~rg~~~~i~~~g~~lG~ll  158 (491)
T PRK11010         90 LLLVAIAAMGF--LE----PGTQLRWLAA----LAVVIAFCSASQDIVFDAWKTDVLP-AEERGAGAAISVLGYRLAMLV  158 (491)
T ss_pred             HHHHHHHHHHH--cC----CcchHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhcC-hhhhHHHHHHHHHHHHHHHHH
Confidence            77776544421  11    1122222222    2234567777888889999999976 578999999999988888887


Q ss_pred             HHHHHHHHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCC--CCchHHHHHHHHhcHHHHHHH
Q 021040          179 LYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRG--NSHARISWAYWFKKILYYQVA  256 (318)
Q Consensus       179 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  256 (318)
                      ++.+...+.+.         ..+||+.+++.++++++..+..+ +.||+++++++++  +++..+++++.+++|..+...
T Consensus       159 g~~l~~~l~~~---------~~GWr~~f~i~a~l~ll~~l~~~-~~~e~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l  228 (491)
T PRK11010        159 SGGLALWLADR---------YLGWQGMYWLMAALLIPCIIATL-LAPEPTDTIPVPKTLEQAVVAPLRDFFGRNNAWLIL  228 (491)
T ss_pred             HHHHHHHHHhc---------ccCHHHHHHHHHHHHHHHHHHHH-hcCCCccccccccchhhhHHHHHHHHHcCcCHHHHH
Confidence            76655444321         13799999888877666644443 4788643321111  112235677888888777666


Q ss_pred             HHHHHHHHHHHHHHHHhHHhhhhccccccchhhHHH-HHHH----HHHHHHHHHHHHHHH
Q 021040          257 LVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVP-AIIY----ICSFIVSILLQVISL  311 (318)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~-~~~~----v~~~i~~~~~~~i~~  311 (318)
                      ...++..........+.+.|+.++.|++..+.+... ....    +++++++.+.||+++
T Consensus       229 l~~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~  288 (491)
T PRK11010        229 LLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSL  288 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            555666666666677888898888899887665543 2333    455555666666654

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.86  E-value=3.5e-19  Score=165.23  Aligned_cols=268  Identities=14%  Similarity=0.056  Sum_probs=165.2

Q ss_pred             CchhhhhhcccchHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHH
Q 021040           22 GRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVA  101 (318)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~  101 (318)
                      +|+......++.+.............+.+.++.|++.+++|++.++..+...+++|+.|.++||+||||++ ..+.++.+
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~-~~~~~~~~   88 (405)
T TIGR00891        10 QWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPM-VTSIVLFS   88 (405)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH-HHHHHHHH
Confidence            34444555566666666666666666666566799999999999999999999999999999999999984 56776666


Q ss_pred             HHHHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHH
Q 021040          102 VSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYA  181 (318)
Q Consensus       102 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~  181 (318)
                      ++......       .+  +.....    +.+++.+++.+...+...+++.|..+ +++|+++.++.+.+..+|..+++.
T Consensus        89 ~~~~~~~~-------~~--~~~~l~----~~~~l~G~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~  154 (405)
T TIGR00891        89 AGTLACGF-------AP--GYITMF----IARLVIGIGMGGEYGSSAAYVIESWP-KHLRNKASGLLISGYAVGAVVAAQ  154 (405)
T ss_pred             HHHHHHHH-------hc--cHHHHH----HHHHHHHhhhhhhhHHHHHHHHHhCC-hhhhhHHHHHHHHHHHHHHHHHHH
Confidence            66544321       11  222222    22345677777777777788888876 478999999999888888888776


Q ss_pred             HHHHHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhccccccccccc-CCCCchHHHHHHHHh------------
Q 021040          182 IAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGL-RGNSHARISWAYWFK------------  248 (318)
Q Consensus       182 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~~-~~~~~~~~~~~~~~~------------  248 (318)
                      +++.+....+        .+|++.+.+.++..++ .++.....||+++.+++ ++++...+..++..+            
T Consensus       155 l~~~l~~~~~--------~~w~~~f~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (405)
T TIGR00891       155 VYSLVVPVWG--------DGWRALFFISILPIIF-ALWLRKNIPEAEDWKEKHAGKALVRTMVDILYGGEHRIANIVMTL  225 (405)
T ss_pred             HHHHHHHhcC--------ccHHHHHHHHHHHHHH-HHHHHHhCCCChhHHHHhhhhhhhhhHHHHHhccchhhhhhhhhh
Confidence            6555443211        3588888765544433 33444556775421110 000000011111110            


Q ss_pred             ---------c--HHHHHHHHHHHHHHHHHHHHHHHhHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 021040          249 ---------K--ILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQVISLKL  313 (318)
Q Consensus       249 ---------~--~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~v~~~i~~~~~~~i~~~~  313 (318)
                               +  +.+........+..........++|.|+.++.|.+..+.+.+.....++++++..+.++++||+
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~  301 (405)
T TIGR00891       226 AAAMVQSAGKRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWL  301 (405)
T ss_pred             hHHhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                     0  0122223333334444456667889999999998876655554444455555555555555554

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.86  E-value=4e-19  Score=170.23  Aligned_cols=265  Identities=11%  Similarity=0.021  Sum_probs=183.0

Q ss_pred             chhhhhhcccchHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHH
Q 021040           23 RWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAV  102 (318)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i  102 (318)
                      |......+++.+...+..++.+.-+|....++|.+..+.+++.+.+.+..+..+|+.|+++||+||||. +..+.++.++
T Consensus         5 ~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~-l~~~~~~~~~   83 (495)
T PRK14995          5 WLTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRL-LMLGGTLFGL   83 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH-HHHHHHHHHH
Confidence            444566667777777777788888888888889999999999999999999999999999999999998 5678877777


Q ss_pred             HHHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHH
Q 021040          103 SFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAI  182 (318)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~  182 (318)
                      +.....       ..+  +.+..++.    +.+.+++.+...+.....+.+..+++++|+++.++......+|..+++.+
T Consensus        84 ~~~~~~-------~a~--~~~~li~~----r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~l  150 (495)
T PRK14995         84 ASLAAA-------FSP--TASWLIAT----RALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLV  150 (495)
T ss_pred             HHHHHH-------HcC--CHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            755432       122  22322222    34566776665555555555555456889999999988888888887776


Q ss_pred             HHHHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCC----------------------C---
Q 021040          183 AFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGN----------------------S---  237 (318)
Q Consensus       183 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~~~~~----------------------~---  237 (318)
                      ++.+..          ..+|||.+++...++++..++..+..||++++++++.+                      .   
T Consensus       151 gg~l~~----------~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~  220 (495)
T PRK14995        151 GGILLE----------HFYWGSVFLINVPIVLVVMGLTARYVPRQAGRRDQPLNLGHALMLIVAILLLVYSAKTALKGFL  220 (495)
T ss_pred             HHHhhc----------cCChHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCChHhHHHHHHHHHHHHHHHHhccccCC
Confidence            655543          25799999887777777666666677775432211100                      0   


Q ss_pred             ch------------------HHHH--------HHHHhcHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhccccccchhhHH
Q 021040          238 HA------------------RISW--------AYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALV  291 (318)
Q Consensus       238 ~~------------------~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~  291 (318)
                      ..                  ..+.        .+++|||.+.......++..........++|.|+++.+|.++.+.+..
T Consensus       221 ~~~~~~~~~~~~~~~l~~f~~~e~~~~~p~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~  300 (495)
T PRK14995        221 SLWVTSLTLLTGALLLGLFIRTQLAASRPMIDMRLFTHRIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMF  300 (495)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCHHHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence            00                  0000        257788888877777777777777788899999999999998655544


Q ss_pred             HHHHHH----HHHHHHHHHHHHHH
Q 021040          292 PAIIYI----CSFIVSILLQVISL  311 (318)
Q Consensus       292 ~~~~~v----~~~i~~~~~~~i~~  311 (318)
                      .....+    ++.+++.+.||+++
T Consensus       301 ~~~~~~~~~~~~~~~g~l~~r~g~  324 (495)
T PRK14995        301 MLPVMVASGFSGPIAGILVSRLGL  324 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCc
Confidence            443334    44555555555543

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.86  E-value=3.6e-19  Score=163.12  Aligned_cols=244  Identities=11%  Similarity=-0.015  Sum_probs=153.1

Q ss_pred             HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccc
Q 021040           42 CWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTST  121 (318)
Q Consensus        42 ~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~  121 (318)
                      .+.++.|...++.|+|.+++|++.++..+...+++|+.|.++||+||||++ ..+.++.+++.....       +.+  +
T Consensus        21 ~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~-~~~~~~~~~~~~~~~-------~~~--~   90 (377)
T TIGR00890        21 TWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVA-MLGGILYGLGFTFYA-------IAD--S   90 (377)
T ss_pred             hhhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchh-HHhHHHHHHHHHHHH-------HHH--H
Confidence            344444554455699999999999999999999999999999999999984 567777777654332       111  2


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchhHH
Q 021040          122 LKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQ  201 (318)
Q Consensus       122 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~  201 (318)
                      .+...+.    +.+.+++.+...........+..  +++|+++.+....+..+|..++    +|+...+..      ..+
T Consensus        91 ~~~~~~~----~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~----~~~~~~~~~------~~~  154 (377)
T TIGR00890        91 LAALYLT----YGLASAGVGIAYGIALNTAVKWF--PDKRGLASGIIIGGYGLGSFIL----SPLITSVIN------LEG  154 (377)
T ss_pred             HHHHHHH----HHHHhHHHHHHHHhHHHHHHHHc--CcccHHHHHHHHHhcchhHhHH----HHHHHHHHh------ccc
Confidence            2222222    23455555544333344444544  3579999998888777776543    344333221      257


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcccccccccccC--CCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhHHhhhh
Q 021040          202 YRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLR--GNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVIN  279 (318)
Q Consensus       202 ~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~  279 (318)
                      ||+.+++.+++..+..+...+.+||++++++++  +..+...+.++.+|||+++......++..........+.+.|.++
T Consensus       155 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (377)
T TIGR00890       155 VPAAFIYMGIIFLLVIVLGAFLIGYPPGQLIKTNIEVSVKDYTVWEMLRTPQFWVLYLSFFLNAVSGLLLIGLYKPYGQS  234 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHheecCchhccccCcccchhhhhHHHHHcCccHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            999998888877777766666676654332111  111223356788899998877776666666655566677777644


Q ss_pred             ccccccchhhHHHHH----HHHHHHHHHHHHHHHHHh
Q 021040          280 DLRMGQSAKALVPAI----IYICSFIVSILLQVISLK  312 (318)
Q Consensus       280 ~~g~~~~~~~~~~~~----~~v~~~i~~~~~~~i~~~  312 (318)
                       .|.++...+.+..+    ..++..+++.+.||+++|
T Consensus       235 -~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~  270 (377)
T TIGR00890       235 -LGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQ  270 (377)
T ss_pred             -cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence             67665444333333    334555555666665554

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.86  E-value=2.7e-20  Score=167.74  Aligned_cols=247  Identities=15%  Similarity=0.065  Sum_probs=182.5

Q ss_pred             HHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccchhH
Q 021040           46 YLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKV  124 (318)
Q Consensus        46 ~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~  124 (318)
                      +-.+++.|. |+|++|.|++.+.+.+...++..+.|.++||.+.|+- +..|+++.++..+++-       ++  .+...
T Consensus        50 ~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~f-m~~gLilsai~nil~G-------fs--~s~~~  119 (448)
T COG2271          50 LAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYF-MAFGLILSAIVNILFG-------FS--PSLFL  119 (448)
T ss_pred             hccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcee-ehHHHHHHHHHHHHHh-------hh--hHHHH
Confidence            345666665 7999999999999999999999999999999999876 7889999888876542       12  12222


Q ss_pred             HHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchhHHHHH
Q 021040          125 ETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRW  204 (318)
Q Consensus       125 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  204 (318)
                      ..    ++-.+.+..-+...+|....+....+ ++|||+..++.+..-|+|+.+.+.+...  +.+..      ..+||.
T Consensus       120 ~~----~l~~lng~fQg~Gwpp~~~~i~~Wfs-r~eRG~~~siWn~shNiGGal~~~~~~l--a~~~~------~~~w~~  186 (448)
T COG2271         120 FA----VLWVLNGWFQGMGWPPCARTITHWFS-RKERGTWWSIWNTSHNIGGALAPLVALL--AFFAF------HGGWRA  186 (448)
T ss_pred             HH----HHHHHHHHHhcCCCcHHHHHHHHHcC-ccccCceEEEehhhhhcccchHHHHHHH--HHHHh------ccchhH
Confidence            12    22234555556666666677777765 6899999999999999998776554411  32221      247999


Q ss_pred             HHHHHHHHHHHHHHHHHhcccccccccc---------------cCCCC----chH-HHHHHHHhcHHHHHHHHHHHHHHH
Q 021040          205 IAYSSIFIGCCFVGIFLSRTEEPRLKMG---------------LRGNS----HAR-ISWAYWFKKILYYQVALVYMLTRL  264 (318)
Q Consensus       205 ~~~i~~~~~~l~~~~~~~~~~e~~~~~~---------------~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~  264 (318)
                      .|++.++++++.+++.++..||+|++..               +++++    +.+ .-++.++|||..|.+++++++...
T Consensus       187 ~f~~pgiiaiival~~~~~~rd~Pqs~GLP~ie~~~~d~~e~~~~~~~~~~ls~~~i~~~YVL~Nk~iW~la~a~vfvYi  266 (448)
T COG2271         187 AFYFPGIIAIIVALILLFLLRDRPQSEGLPPIEEYRGDPLEIYEEEKENEGLTAWQIFVKYVLKNKLIWLLALANVFVYV  266 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCccccCCCCHHHhhcCchhhhhhhccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHH
Confidence            9999999999999999888888764310               01111    112 236788999999999999999999


Q ss_pred             HHHHHHHHhHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021040          265 VVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQVISLKLYS  315 (318)
Q Consensus       265 ~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~v~~~i~~~~~~~i~~~~~~  315 (318)
                      .=+....|.|.|+.|..|++...........=++++.++++.+.+|||++.
T Consensus       267 vR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfk  317 (448)
T COG2271         267 VRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFK  317 (448)
T ss_pred             HHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc
Confidence            999999999999999999997655444444446777777777777777764

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.86  E-value=6.9e-20  Score=166.61  Aligned_cols=255  Identities=18%  Similarity=0.177  Sum_probs=172.2

Q ss_pred             chHHHHHHHHHHHHHHHHHHH-hCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCC
Q 021040           33 HMLNDITAACWFTYLLLFLTD-IGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGC  111 (318)
Q Consensus        33 ~~~~~~~~~~~~~~l~~~l~~-~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~  111 (318)
                      .+..........+.++.++.+ .|.|+.++|++.++..+...+.+++.|.++||+||||. +..+.++.+++.....   
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~-l~~~~~~~~~~~~~~~---   80 (352)
T PF07690_consen    5 FFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRV-LIIGLLLFALGSLLLA---   80 (352)
T ss_dssp             HHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHH-HHHHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeee-EeehhhhhhhHHHHhh---
Confidence            344455556666667745555 59999999999999999999999999999999999996 6778888777733222   


Q ss_pred             CCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 021040          112 MPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVST  191 (318)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~  191 (318)
                          +.++  .+..    .+..++.+++.+...+...+++.|..++ ++|++..+..+....+|.++++.+++.+..   
T Consensus        81 ----~~~~--~~~~----~~~~~l~g~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~---  146 (352)
T PF07690_consen   81 ----FASN--FWLL----LIARFLLGIGSGFFSPASNALIADWFPP-EERGRAFGILSAGFSLGSILGPLLGGFLIS---  146 (352)
T ss_dssp             ----HHCC--HHHH----HHHHHHHHHHHHHHHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHHHHHHHCCC---
T ss_pred             ----hhhh--HHHH----hhhccccccccccccccccccccccchh-hhhhhccccccchhhhhhhcccchhhhhhh---
Confidence                1111  2222    2233467788788888888999999864 799999999999888888776555433221   


Q ss_pred             cCcccchhHHHHHHHHHHHHHHHHHHHHHHhccccccccccc--CCCC-----chH-HHHHHHHhcHHHHHHHHHHHHHH
Q 021040          192 AKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGL--RGNS-----HAR-ISWAYWFKKILYYQVALVYMLTR  263 (318)
Q Consensus       192 ~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~~--~~~~-----~~~-~~~~~~~~~~~~~~~~~~~~~~~  263 (318)
                             ..+|++.+++.+++.++..++...+.+|+++++++  ++++     +.. +.++.++++|.++......++..
T Consensus       147 -------~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (352)
T PF07690_consen  147 -------YFGWRWAFLISAILSLIAAILFILFLPEPPPPRERESPKESESKKPKPLKPGFKSLFKNPVLWILLIAFFLFF  219 (352)
T ss_dssp             -------HCHHCCHHHHHHHHHHHHHHHHHCCC---STTTT--SSTTTT--HHHCCCH-CTHHHHHHCCHHHHHHHHHHH
T ss_pred             -------ccccccccccccchhhhhhhhHhhhhhhcccccccccccccccccccccccccccccccchhhhhhhhhhHHH
Confidence                   35788898888888777766544455544332211  1111     111 23677888887775555556666


Q ss_pred             HHHHHHHHHhHHhhhhccccc-cchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 021040          264 LVVNVSQAYLAFYVINDLRMG-QSAKALVPAIIYICSFIVSILLQVISLK  312 (318)
Q Consensus       264 ~~~~~~~~~~~~yl~~~~g~~-~~~~~~~~~~~~v~~~i~~~~~~~i~~~  312 (318)
                      ........+.|.|+.+.+|.+ ....+.+..+..+.+.++..+.+++.||
T Consensus       220 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  269 (352)
T PF07690_consen  220 FVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDR  269 (352)
T ss_dssp             HHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            677778899999999999999 5555555555555665556666666665

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.85  E-value=1.7e-18  Score=161.18  Aligned_cols=255  Identities=9%  Similarity=-0.047  Sum_probs=175.3

Q ss_pred             hhcccchHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHH
Q 021040           28 YYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSV  107 (318)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~  107 (318)
                      .+.++.+...+.........++..++.+.++.+.+++.+.+.+...+.+|+.|+++||+||||. +.++.++.+++...+
T Consensus         7 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~v-l~~~~~~~~~~~~~~   85 (393)
T PRK11195          7 AIMAAQFFSALADNALLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRV-MFIANGIKLLGCLLM   85 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchh-hHHHHHHHHHHHHHH
Confidence            4555666656655555555566667779999999999999999999999999999999999998 566777766654432


Q ss_pred             hCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021040          108 FGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVF  187 (318)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~  187 (318)
                      ..       ..  + .  .+    .+++.+++.+...+...++++|+.+ ++||+++.++.+....+|.++++.+++.+.
T Consensus        86 ~~-------~~--~-~--~~----~r~l~G~~~a~~~pa~~a~i~~~~~-~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~  148 (393)
T PRK11195         86 LF-------GI--H-P--LL----AYGLVGIGAAAYSPAKYGILTELLP-GEKLVKANGWMEGSTIAAILLGTVLGGALA  148 (393)
T ss_pred             HH-------HH--H-H--HH----HHHHHHHHHHHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            21       11  1 1  12    2245678888888888999999986 579999999999888888888877776665


Q ss_pred             HhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCC--C----CchHHHHHHHHhcHHHHHHHHHHHH
Q 021040          188 SVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRG--N----SHARISWAYWFKKILYYQVALVYML  261 (318)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~  261 (318)
                      +           ..|+..+.+.+....+ ..+..+.+||+++++++++  +    .+.++.++.++|+|.++.......+
T Consensus       149 ~-----------~~~~~~~~i~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  216 (393)
T PRK11195        149 D-----------PHAEAALAVCALIYLL-AALFNLFIPRLGARRPGQSWNPIALLRDFFHACRVLWRDKLGRFSLAGTTL  216 (393)
T ss_pred             H-----------HHHHHHHHHHHHHHHH-HHHHHhcCCCCcccccccCCCHHHHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence            3           1244444444333322 2334456777543221111  1    1123445778889887766555555


Q ss_pred             HHHHHHHHHHHhHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 021040          262 TRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQVISLK  312 (318)
Q Consensus       262 ~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~v~~~i~~~~~~~i~~~  312 (318)
                      .+.........+|.|+++.+|.++.+.+.+.....+++++++++.+|+.||
T Consensus       217 ~~~~~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~  267 (393)
T PRK11195        217 FWGAGATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTL  267 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            555555566677888888899998877777777778888889988888775

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.85  E-value=7e-19  Score=163.04  Aligned_cols=258  Identities=11%  Similarity=0.040  Sum_probs=174.3

Q ss_pred             hhhhcccchHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHH
Q 021040           26 VLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFS  105 (318)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~  105 (318)
                      ...+.++.+..........+.+|.+.+|.|.+.++.|++.+...+...+++|+.|+++||+||||. +..+.++.+++..
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~-~~~~~~~~~~~~~   83 (382)
T PRK10091          5 ILSLALGTFGLGMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHI-LLFLVALCVIGNA   83 (382)
T ss_pred             HHHHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHH-HHHHHHHHHHHHH
Confidence            344555666666666677788888777789999999999999999999999999999999999988 5677777777755


Q ss_pred             HHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 021040          106 SVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFI  185 (318)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~  185 (318)
                      ...       +.+  +.+...+.    +++.+++.+...+...+.+.+..+ +++|+++.+....+..+|..+++.+++.
T Consensus        84 l~~-------~~~--~~~~l~~~----r~l~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~g~~l~~~  149 (382)
T PRK10091         84 MFT-------LSS--SYLMLAIG----RLVSGFPHGAFFGVGAIVLSKIIK-PGKVTAAVAGMVSGMTVANLLGIPLGTY  149 (382)
T ss_pred             HHH-------HhC--cHHHHHHH----HHHHHhhhHHHHHHHHHHHHHhCC-hHHhhHHHHHHHHHHHHHHHHhccHHHH
Confidence            432       122  22322222    345666666655555666677664 5678888888777777776665544333


Q ss_pred             HHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHH
Q 021040          186 VFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLV  265 (318)
Q Consensus       186 l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (318)
                      +..          ..+||+.+.+.+++..+..+...+..||+++++    +.+.++.+ +.+|+++.+......++....
T Consensus       150 l~~----------~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  214 (382)
T PRK10091        150 LSQ----------EFSWRYTFLLIAVFNIAVLASIYFWVPDIRDEA----KGGLREQF-HFLRSPAPWLIFAATMFGNAG  214 (382)
T ss_pred             Hhh----------hccHHHHHHHHHHHHHHHHHHHHHhCCCCCccc----ccCHHHHH-HHhcChHHHHHHHHHHHHHHH
Confidence            321          247999998888776666655556677754321    11223333 456788777666555555555


Q ss_pred             HHHHHHHhHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 021040          266 VNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQVISLKL  313 (318)
Q Consensus       266 ~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~v~~~i~~~~~~~i~~~~  313 (318)
                      .....+|.+.|+++..|.++...+.+.....++.+++.++.+++.||+
T Consensus       215 ~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~  262 (382)
T PRK10091        215 VFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRY  262 (382)
T ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheecccc
Confidence            555667888888888898887666655555566666666766666664

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.85  E-value=1.3e-18  Score=162.26  Aligned_cols=257  Identities=14%  Similarity=0.086  Sum_probs=162.0

Q ss_pred             ccchHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCC
Q 021040           31 SGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGG  110 (318)
Q Consensus        31 ~~~~~~~~~~~~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~  110 (318)
                      +..+.............|.+.++.|.++.+.|++.+...+...+++++.|+++||+||||.+ ..+.++..++...... 
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~-~~~~~~~~~~~~~~~~-   99 (406)
T PRK11551         22 LVALLEGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRIL-IVSVALFGLFSLATAQ-   99 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhH-HHHHHHHHHHHHHHHH-
Confidence            34444444444455556666666799999999999999999999999999999999999984 5566666665443321 


Q ss_pred             CCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021040          111 CMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVS  190 (318)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~  190 (318)
                            .+  +.....+    .+++.+++.+...+...+++.|..+ +++|+++.++.+.+..+|..+++.++..+..  
T Consensus       100 ------~~--~~~~~~~----~~~l~G~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~--  164 (406)
T PRK11551        100 ------AW--DFPSLLV----ARLLTGVGLGGALPNLIALTSEAVG-PRLRGTAVSLMYCGVPFGGALASVIGVLAAG--  164 (406)
T ss_pred             ------hc--cHHHHHH----HHHHHHhhHHHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--
Confidence                  11  2222222    2345677777666677788888875 5789999999888888887766554422211  


Q ss_pred             ccCcccchhHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCC-CCchHHHHHHHHhc---HHHHHHHHHHHHHHHHH
Q 021040          191 TAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRG-NSHARISWAYWFKK---ILYYQVALVYMLTRLVV  266 (318)
Q Consensus       191 ~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~  266 (318)
                              ..+|++.+++.+++.++..++...+.||+++++++++ +++..+..+..+++   +..+......++.....
T Consensus       165 --------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (406)
T PRK11551        165 --------DAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQRAPVLRALFGEGRATATLLLWISYFFTLIVL  236 (406)
T ss_pred             --------ccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchhhhhhHHHHhhhhhhhHHHHHHHHHHHHHHHH
Confidence                    2468888877766655555555566788654322111 11111122233332   33444444455555556


Q ss_pred             HHHHHHhHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 021040          267 NVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQVISLKL  313 (318)
Q Consensus       267 ~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~v~~~i~~~~~~~i~~~~  313 (318)
                      +....|+|.|+++ .|.+....+.......++++++.++.+++.||+
T Consensus       237 ~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~  282 (406)
T PRK11551        237 YFLLNWLPSLLVG-QGLSRSQAGLVQIAFNIGGALGSLLIGALMDRL  282 (406)
T ss_pred             HHHHHHHHHHHHh-CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6777889999887 588776555555555555566666666655554

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.85  E-value=2.1e-19  Score=164.83  Aligned_cols=242  Identities=16%  Similarity=0.133  Sum_probs=169.1

Q ss_pred             HHHHHH-hCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccchhHHH
Q 021040           48 LLFLTD-IGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVET  126 (318)
Q Consensus        48 ~~~l~~-~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  126 (318)
                      .+++.+ .|+|..+.|++.++..+...+++++.|+++||+|||+. +..+.++.+++......       .+  +.+...
T Consensus        18 ~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~-~~~~~~~~~~~~~~~~~-------~~--~~~~~~   87 (379)
T TIGR00881        18 MPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVF-LPIGLILCAIVNLFFGF-------ST--SLWVMA   87 (379)
T ss_pred             hHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeeh-hHHHHHHHHHHHHHHHH-------hh--hHHHHH
Confidence            344555 59999999999999999999999999999999999998 56677777776554431       11  122222


Q ss_pred             HHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHH-HHHHHHHHhhccCcccchhHHHHHH
Q 021040          127 ISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLY-AIAFIVFSVSTAKTHADLENQYRWI  205 (318)
Q Consensus       127 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~  205 (318)
                          +..++.+++.+...+...+++.|..+ +++|++..++.+....+|..+++ .++..+..          ..+|++.
T Consensus        88 ----~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~----------~~~~~~~  152 (379)
T TIGR00881        88 ----ALWALNGIFQGMGWPPCGRTVTKWFS-RSERGTWVSFWNCSHNVGGGLLPPLVLFGIAE----------LYSWHWV  152 (379)
T ss_pred             ----HHHHHHHhhccccCCchHHHHHHhcC-HhhheeeEeehhccchhHHHHHHHHHHHHHHh----------cCCchhH
Confidence                22345667777666777788888875 57899999988888888877765 23222211          2468888


Q ss_pred             HHHHHHHHHHHHHHHHhcccccccccc---------cC-------C---CCchHHHHHHHHhcHHHHHHHHHHHHHHHHH
Q 021040          206 AYSSIFIGCCFVGIFLSRTEEPRLKMG---------LR-------G---NSHARISWAYWFKKILYYQVALVYMLTRLVV  266 (318)
Q Consensus       206 ~~i~~~~~~l~~~~~~~~~~e~~~~~~---------~~-------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (318)
                      +++.+++.++..++..+..||++++++         ++       +   ....+...++++|+|.++...+..++.....
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (379)
T TIGR00881       153 FIVPGIIAIIVSLICFLLLRDSPQSCGLPPAEEMPNEEPDGDAEKKEEELTKKQIFLQYVLLNKVLWYISLGYVFVYVVR  232 (379)
T ss_pred             HHHHHHHHHHHHHHHheeeCCCccccccCccccCcccccccccccccccccchHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence            887777776666666666666432110         00       0   0112234677889999998888888888888


Q ss_pred             HHHHHHhHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021040          267 NVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQVISLKLY  314 (318)
Q Consensus       267 ~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~v~~~i~~~~~~~i~~~~~  314 (318)
                      .....+.|.|+.+..|.++...+.......++++++.++.+++.||.+
T Consensus       233 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~  280 (379)
T TIGR00881       233 TGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLF  280 (379)
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHc
Confidence            888999999999999998766665555556666677777777776643

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.85  E-value=4.5e-19  Score=167.28  Aligned_cols=248  Identities=13%  Similarity=0.059  Sum_probs=164.0

Q ss_pred             HHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccchhHH
Q 021040           46 YLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVE  125 (318)
Q Consensus        46 ~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  125 (318)
                      +..+++++.|+++++.|++.+++.+...+++++.|+++||+|||+. +..+.++.+++......  .+.  . ..+....
T Consensus        48 ~~~p~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~-~~~~~~~~~~~~~~~~~--~~~--~-~~~~~~l  121 (438)
T TIGR00712        48 LAMPYLVEQGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVF-LPAGLILSAAVMLLMGF--VPW--A-TSSIAIM  121 (438)
T ss_pred             hhhHHHHHcCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCcee-hHHHHHHHHHHHHHHhc--ccc--c-cchHHHH
Confidence            3456777779999999999999999999999999999999999987 56677776666543321  110  0 0111111


Q ss_pred             HHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchhHHHHHH
Q 021040          126 TISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWI  205 (318)
Q Consensus       126 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  205 (318)
                          .+...+.+++.+...++....+.|..+ +++|+++.++.+.+..+|..+++.+.+.....         ..+||+.
T Consensus       122 ----~~~~~l~g~~~g~~~~~~~~~i~~~~~-~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~---------~~~w~~~  187 (438)
T TIGR00712       122 ----FVLLFLNGWFQGMGWPPCGRTMVHWWS-QSERGTIVSIWNCAHNIGGGIPPLLVLLGMAW---------FNDWHAA  187 (438)
T ss_pred             ----HHHHHHHHHHhhcchHHHHHHHHHhcC-cccchhHHHHHHHHHHhHhHHHHHHHHHHHHH---------hhhhHHH
Confidence                122234566666655566667778775 57899999998888877776654443222211         2479998


Q ss_pred             HHHHHHHHHHHHHHHHhccccccccc---c-c---C-------C--C--CchHHH-HHHHHhcHHHHHHHHHHHHHHHHH
Q 021040          206 AYSSIFIGCCFVGIFLSRTEEPRLKM---G-L---R-------G--N--SHARIS-WAYWFKKILYYQVALVYMLTRLVV  266 (318)
Q Consensus       206 ~~i~~~~~~l~~~~~~~~~~e~~~~~---~-~---~-------~--~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  266 (318)
                      +++.++++++..++..+.+||+++++   + +   +       +  +  .+.++. .+.++|||.++......++.....
T Consensus       188 f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (438)
T TIGR00712       188 LYFPAICAIIVALFAFAMMRDTPQSCGLPPIEEYRNDYPDDYNEKAEQELTAKEIFMQYVLPNKLLWYIAIANVFVYLLR  267 (438)
T ss_pred             HHHHHHHHHHHHHHHHHhccCCHHhcCCCCchhcccccccccccccccccchHHHHHHHHccCchHHHHHHHHHHHHHHH
Confidence            88888777776666666677754321   0 0   0       0  0  011111 234778999988877777777777


Q ss_pred             HHHHHHhHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 021040          267 NVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQVISLKL  313 (318)
Q Consensus       267 ~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~v~~~i~~~~~~~i~~~~  313 (318)
                      +...+|+|.|+++..|+++.+.+.......+.++++.++.+++.||.
T Consensus       268 ~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~  314 (438)
T TIGR00712       268 YGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV  314 (438)
T ss_pred             HHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            78889999999998898876655555445555555555555555554

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.85  E-value=2.7e-18  Score=162.56  Aligned_cols=282  Identities=13%  Similarity=0.068  Sum_probs=209.1

Q ss_pred             CchhhhhhcccchHHHHHH-HHHHHHHHHHHHHh----CCC--------------------------hhHHHHHHHHHHH
Q 021040           22 GRWSVLYYGSGHMLNDITA-ACWFTYLLLFLTDI----GLS--------------------------PRGAAAVMLSGQI   70 (318)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~----gls--------------------------~~~~g~i~~~~~i   70 (318)
                      ++|+.+.|.+.+++|+... .+...++|+|++++    |.+                          .+..+...+++.+
T Consensus         2 tr~~i~~W~lyd~ans~f~~~i~t~~~p~~~~~~a~~~g~~~~~~~~~c~~~~~~c~~~~~g~~~~~~s~~~~~~sis~l   81 (477)
T PF11700_consen    2 TRREIWSWALYDWANSPFATVIVTFFFPPYFQSLAREAGVLPGDPTQPCSDSDDDCVVPFFGSWIDTSSLWLYANSISGL   81 (477)
T ss_pred             chhHHHHHHHhHhhcccchhhhHHHHHHHHHHHHHHhcccccccccCcccccCCccccccccccccHhHHHHHHHHHHHH
Confidence            4688899999999988643 34556788998874    211                          3456788999999


Q ss_pred             HHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhh
Q 021040           71 ADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSM  150 (318)
Q Consensus        71 ~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  150 (318)
                      ..++..|+.|.++|+.|+||.++.+...+..++...+++  +    .+ . .++...   ++.++..+++....+.++++
T Consensus        82 ~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~--v----~~-~-~~~~~~---~l~iia~v~~~~~~vfyna~  150 (477)
T PF11700_consen   82 LQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWF--V----SP-G-QWWLAL---VLFIIANVGYEASNVFYNAY  150 (477)
T ss_pred             HHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHH--h----Cc-c-hHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999887777776666665543  1    11 1 222211   11234567888889999999


Q ss_pred             ccccccCccc-------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchhHHHHHH
Q 021040          151 VNCITLNSTS-------------------------RVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWI  205 (318)
Q Consensus       151 ~~~~~~~~~~-------------------------R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  205 (318)
                      .+|+.+++++                         |+++++.....+++|+++...+...++...+..  .+...+.|+.
T Consensus       151 LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~--~~~~~~~r~~  228 (477)
T PF11700_consen  151 LPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGST--ASNTWAIRVA  228 (477)
T ss_pred             hHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCc--cccchhhhHH
Confidence            9999876433                         288999888888888887766554433322211  1123567888


Q ss_pred             HHHHHHHHHHHHHHHHhccccccccc-ccCCC-------CchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhHHhh
Q 021040          206 AYSSIFIGCCFVGIFLSRTEEPRLKM-GLRGN-------SHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYV  277 (318)
Q Consensus       206 ~~i~~~~~~l~~~~~~~~~~e~~~~~-~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl  277 (318)
                      +.+.++..++..+..++++||++.++ .++.+       ++.++.+|++.|+|+...+++++++..-+.+........|.
T Consensus       229 ~~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~t~k~~~~~~~~~~fLia~~l~~dg~~ti~~~~~i~a  308 (477)
T PF11700_consen  229 FLIVALWWLVFSIPLFLWLPDRPGPRPLPSGSSYLRFGFKRLWRTFKEIRKLRQLFLFLIAYFLYSDGVNTIISFAGIYA  308 (477)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888888899999999986522 11111       23345667788889999999999999999999999999999


Q ss_pred             hhccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 021040          278 INDLRMGQSAKALVPAIIYICSFIVSILLQVISLKLYSM  316 (318)
Q Consensus       278 ~~~~g~~~~~~~~~~~~~~v~~~i~~~~~~~i~~~~~~~  316 (318)
                      .+++|++..++..+.++..+.+++++++.+++.||+=..
T Consensus       309 ~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k  347 (477)
T PF11700_consen  309 TEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPK  347 (477)
T ss_pred             HHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence            999999998888888888888999998888888887543

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.84  E-value=1.6e-18  Score=160.62  Aligned_cols=257  Identities=13%  Similarity=0.002  Sum_probs=166.2

Q ss_pred             cccchHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhC
Q 021040           30 GSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFG  109 (318)
Q Consensus        30 ~~~~~~~~~~~~~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~  109 (318)
                      .++.+..-....+..+++|.|+++.|.|.+++|++.+++.+...+.+|++|.++||+|||+...........+...... 
T Consensus        10 ~~~~~~~~~~~~~~~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~~~~-   88 (382)
T TIGR00902        10 ALGFFGYFCAYGIFLPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAAAFS-   88 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH-
Confidence            3444555566678889999999999999999999999999999999999999999999854422111111111111111 


Q ss_pred             CCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021040          110 GCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSV  189 (318)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~  189 (318)
                        .   ..  ++.+..++.+    .+.+.+.+...+...++..+.   ++||++..+.......+|.++++.+++.+.+.
T Consensus        89 --~---~~--~~~~~l~~~~----~l~~~~~~~~~p~~~al~~~~---~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~  154 (382)
T TIGR00902        89 --A---GA--HNAWLLFIAI----GLFALFFSAGMPIGDALANTW---QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGM  154 (382)
T ss_pred             --H---hh--hhHHHHHHHH----HHHHHHHccchhHHHHHHHHH---HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence              0   11  1233222222    335555555555555555432   35677777877777778887776665555432


Q ss_pred             hccCcccchhHHHHHHHHHHHHHHHHHHHHHHhcccccccccc-cCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHH
Q 021040          190 STAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMG-LRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNV  268 (318)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (318)
                                .+|++.+.+.+++.. +.++.....|+.+++++ ++++.+..+++++++|||+++...+..++.+.....
T Consensus       155 ----------~g~~~~f~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~l~~~~~~~  223 (382)
T TIGR00902       155 ----------FDEQNILAILTAGLA-FMLIGFLIKPTIPPKDAIPEDESQGDSAFIALLKNPMNLRFLAAVCLIQGAHAA  223 (382)
T ss_pred             ----------cChhHHHHHHHHHHH-HHHHHHHcCCCCCCCccccccccccchhHHHHHcChHHHHHHHHHHHHHHHHHH
Confidence                      467877766544422 22233333333222211 111122234578899999999999888888888888


Q ss_pred             HHHHhHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 021040          269 SQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQVISLKL  313 (318)
Q Consensus       269 ~~~~~~~yl~~~~g~~~~~~~~~~~~~~v~~~i~~~~~~~i~~~~  313 (318)
                      ..++.|.|++| .|.+....+....+..++.+++..+.+|+.||.
T Consensus       224 ~~~~~~~~l~~-~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~  267 (382)
T TIGR00902       224 YYGFSAIYWQA-AGISASATGLLWGIGVLAEIIIFAFSNKLFQNC  267 (382)
T ss_pred             HHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhC
Confidence            89999999987 788887777666666677777788888887775

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.84  E-value=1.6e-18  Score=161.26  Aligned_cols=240  Identities=11%  Similarity=-0.054  Sum_probs=163.8

Q ss_pred             HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccch
Q 021040           43 WFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTL  122 (318)
Q Consensus        43 ~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~  122 (318)
                      ..+.+|...+|+|+|.++.|++.+.+.+...+++|+.|+++||+||||+ +..+..+++++......       .++  .
T Consensus        28 ~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~-l~~~~~l~~~~~~~~~~-------a~~--~   97 (393)
T PRK09705         28 VGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRS-VAISLLLIAVGALMREL-------YPQ--S   97 (393)
T ss_pred             cchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHH-HHHHHHHHHHHHHHHHH-------Ccc--h
Confidence            4466677777789999999999999999999999999999999999999 57788888888764431       222  2


Q ss_pred             hHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchhHHH
Q 021040          123 KVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQY  202 (318)
Q Consensus       123 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~  202 (318)
                      ...+    +.+++.+++.+...+...+++.+..+  ++|+++.+..+.+...|..+++.+++.+.+..         .+|
T Consensus        98 ~~ll----~~r~l~Gig~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~---------~~w  162 (393)
T PRK09705         98 ALLL----SSALLGGVGIGIIQAVMPSVIKRRFQ--QRTPLVMGLWSAALMGGGGLGAAITPWLVQHS---------ETW  162 (393)
T ss_pred             HHHH----HHHHHHHhHHHHHhhhhhHHHHHHcc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhc---------CCH
Confidence            2222    22345677777766666677777653  67899999988888888888777665444321         257


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcccccccccccCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhccc
Q 021040          203 RWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLR  282 (318)
Q Consensus       203 ~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g  282 (318)
                      |+.+.+.++..++.........+++++++ ++++.    ..++.+|+|+.+.....+.+....+....+|+|.|+++ .|
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~-~g  236 (393)
T PRK09705        163 YQTLAWWALPAVVALFAWWWQSAREVASS-HKTTT----TPVRVVFTPRAWTLGVYFGLINGGYASLIAWLPAFYIE-IG  236 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCccc-cCCCc----CCcccccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cC
Confidence            87765555444433322222222222111 11111    12445678888877777777777778888999999987 68


Q ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 021040          283 MGQSAKALVPAIIYICSFIVSILLQVISLKL  313 (318)
Q Consensus       283 ~~~~~~~~~~~~~~v~~~i~~~~~~~i~~~~  313 (318)
                      .+....+....+..++++++..+.++++||.
T Consensus       237 ~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~  267 (393)
T PRK09705        237 ASAQYSGSLLALMTLGQAAGALLMPAMARHQ  267 (393)
T ss_pred             CChhhhhHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            8876666555566667777777777777764

>PRK10504 putative transporter; Provisional

Probab=99.84  E-value=2.5e-18  Score=163.60  Aligned_cols=265  Identities=15%  Similarity=0.076  Sum_probs=178.5

Q ss_pred             chhhhhhcccchHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHH
Q 021040           23 RWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAV  102 (318)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i  102 (318)
                      +++.+...++.+.........++.+|.+.++.|.++.+.|++.+.+.+...++.|+.|+++||+||||.+ ..+.++.++
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~-~~~~~~~~~   87 (471)
T PRK10504          9 RWQLWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIF-FTAIVLFTL   87 (471)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHH-HHHHHHHHH
Confidence            3445556666677677777788888998888899999999999999999999999999999999999984 566666666


Q ss_pred             HHHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHH
Q 021040          103 SFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAI  182 (318)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~  182 (318)
                      +.....       +.+  +.....    +.+++.+++.+...+...+.+.|..+ +++|+++.+..+...++|..+++.+
T Consensus        88 ~~~~~~-------~~~--~~~~l~----~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~g~~~  153 (471)
T PRK10504         88 GSLFCA-------LSG--TLNELL----LARVLQGVGGAMMVPVGRLTVMKIVP-REQYMAAMTFVTLPGQVGPLLGPAL  153 (471)
T ss_pred             HHHHHH-------HhC--CHHHHH----HHHHHHHhhhHHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHhhhHH
Confidence            554332       111  122222    22345677777766666777778775 5788999888888878888777666


Q ss_pred             HHHHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhcccccccccccC---------------------CCC----
Q 021040          183 AFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLR---------------------GNS----  237 (318)
Q Consensus       183 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~~~---------------------~~~----  237 (318)
                      ++.+.+          ..+|+|.+.+...+..+..+......||.+.++++.                     ++.    
T Consensus       154 ~g~l~~----------~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (471)
T PRK10504        154 GGLLVE----------YASWHWIFLINIPVGIIGAIATLMLMPNYTMQTRRFDLSGFLLLAVGMATLTLALDGSKGLGLS  223 (471)
T ss_pred             HHHHHh----------hccHHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCChHHHHHHHHHHHHHHHHHhcCCcCCcc
Confidence            555543          247999988776666666555555555432211100                     000    


Q ss_pred             --------------------------chHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhccccccchhhHH
Q 021040          238 --------------------------HARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALV  291 (318)
Q Consensus       238 --------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~  291 (318)
                                                +...+ .+++|||+++..+...++.+........+.|.|+++..|.++...+..
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~  302 (471)
T PRK10504        224 PLAIAGLVAVGVVALLLYLLHARNNNRALFS-LKLFRTRTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLM  302 (471)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhcCCCCccC-HHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence                                      00011 247899999988888888888877777888999998888887555544


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhh
Q 021040          292 PAIIYICSFIVSILLQVISLKL  313 (318)
Q Consensus       292 ~~~~~v~~~i~~~~~~~i~~~~  313 (318)
                      .....++.+++..+.+|+.||+
T Consensus       303 ~~~~~~~~~~~~~~~~~l~~r~  324 (471)
T PRK10504        303 MIPMVLGSMGMKRIVVQVVNRF  324 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHc
Confidence            4444444555545555555554

>PRK10054 putative transporter; Provisional

Probab=99.84  E-value=1.4e-18  Score=161.86  Aligned_cols=229  Identities=10%  Similarity=0.044  Sum_probs=154.9

Q ss_pred             hhhhcccchHHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHH
Q 021040           26 VLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSF  104 (318)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~  104 (318)
                      .....+..+.....+....+++++|+++. |+++.++|++.++..+...+.+|+.|+++||+||||. +.++.+..+++.
T Consensus         9 ~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~-~~~~~~~~~~~~   87 (395)
T PRK10054          9 TSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRY-MLLAITAFASGF   87 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchh-HHHHHHHHHHHH
Confidence            34455566667777888889999999875 9999999999999999999999999999999999987 566776666665


Q ss_pred             HHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHH
Q 021040          105 SSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAF  184 (318)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~  184 (318)
                      ....       +.+  +.+...+.    ..+.+.+.+.......++.+|..+ +++|+++.++.+...++|.++++.+++
T Consensus        88 ~~~~-------~~~--~~~~~~~~----~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~lg~~igp~l~~  153 (395)
T PRK10054         88 IAIP-------LVN--NVTLVVLF----FALINCAYSVFSTVLKAWFADNLS-STSKTKIFSLNYTMLNIGWTVGPPLGT  153 (395)
T ss_pred             HHHH-------HHh--HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhcC-HhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4332       111  12211211    123444445555556777788875 568999999998888888888776655


Q ss_pred             HHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCCCchHHHHHHHHhcHHHHHHHHHHHHHHH
Q 021040          185 IVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRL  264 (318)
Q Consensus       185 ~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (318)
                      .+..           .+|++.+.+.+++.++..+...+.+||++++++++ +++ ....++++|||+++......++..+
T Consensus       154 ~l~~-----------~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~l~~~  220 (395)
T PRK10054        154 LLVM-----------QSINLPFWLAAICSAFPLVFIQIWVQRSEKAIATE-TGS-VWSPSVLLQDKALLWFTCSGFLASF  220 (395)
T ss_pred             HHHH-----------hccCcHHHHHHHHHHHHHHHHHHHHhccccccccc-hhh-hhhhhhhccCceehHHHHHHHHHHH
Confidence            4431           35777777666665555444445455543222111 111 1224778899999888887777777


Q ss_pred             HHHHHHHHhHHhhhhccc
Q 021040          265 VVNVSQAYLAFYVINDLR  282 (318)
Q Consensus       265 ~~~~~~~~~~~yl~~~~g  282 (318)
                      .......+.+.|+.+..+
T Consensus       221 ~~~~~~~~~~~~~~~~~~  238 (395)
T PRK10054        221 VSGAFASCISQYVMVVAD  238 (395)
T ss_pred             HHHHhhhhHHHHHHHhcc
Confidence            766666677777765433

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.83  E-value=1.4e-18  Score=162.89  Aligned_cols=259  Identities=9%  Similarity=-0.048  Sum_probs=173.5

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCC
Q 021040           32 GHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGC  111 (318)
Q Consensus        32 ~~~~~~~~~~~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~  111 (318)
                      +.+.+.+...+....+|.+.++.+.++.+.|++.+...+...+.+++.|.++||+||||. +..+.++.+++...+..  
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~-l~~~~~~~~~~~~~~~~--  101 (417)
T PRK10489         25 ARFISIFGLGLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKL-ILLARGTCGLGFIGLAL--  101 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceE-EEehHHHHHHHHHHHHH--
Confidence            345555666667777888888887899999999999999999999999999999999998 45566655555433210  


Q ss_pred             CCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 021040          112 MPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVST  191 (318)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~  191 (318)
                       . .+....+.+...    +..++.+++.+...++..+.++|..+ +++|+++.+..+....+|..+++.+++.+..   
T Consensus       102 -~-~~~~~~~~~~l~----~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~---  171 (417)
T PRK10489        102 -N-AFLPEPSLLAIY----LLGLWDGFFGSLGVTALLAATPALVG-RENLMQAGAITMLTVRLGSVISPALGGLLIA---  171 (417)
T ss_pred             -H-HHcCCCcHHHHH----HHHHHHHHHHHHHHHHHhhhhhhccC-HHHHHHHHHHHHHHHhHHHHhHHHHHHHHHH---
Confidence             0 001111222212    22234556666666666778888875 5788999998888888888887777665553   


Q ss_pred             cCcccchhHHHHHHHHHHHHHHHHHHHHHHhcccccccccccC--CCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHH
Q 021040          192 AKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLR--GNSHARISWAYWFKKILYYQVALVYMLTRLVVNVS  269 (318)
Q Consensus       192 ~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (318)
                             ..+|+|.+++.++..++..+ .....||++++++++  +.++.++.++.++|+|.++...+...+... ....
T Consensus       172 -------~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  242 (417)
T PRK10489        172 -------AGGVAWNYGLAAAGTFITLL-PLLRLPALPPPPQPREHPLRSLLAGFRFLLASPVVGGIALLGGLLTM-ASAV  242 (417)
T ss_pred             -------HHhhHHHHHHHHHHHHHHHH-HHHhCCCCCCCCcccccchHHHHHHHHHHHcChHHHHHHHHHHHHHH-HHhH
Confidence                   24678887766655544433 334556643322111  112334567778889887766555444333 3456


Q ss_pred             HHHhHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 021040          270 QAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQVISLK  312 (318)
Q Consensus       270 ~~~~~~yl~~~~g~~~~~~~~~~~~~~v~~~i~~~~~~~i~~~  312 (318)
                      ..++|.|.++..|.+....+.+.....++++++.++.+++.||
T Consensus       243 ~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~  285 (417)
T PRK10489        243 RVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHS  285 (417)
T ss_pred             HHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            7789999999899988777766666677888888888888876

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.83  E-value=3.3e-19  Score=169.43  Aligned_cols=239  Identities=12%  Similarity=0.114  Sum_probs=169.1

Q ss_pred             HhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccchhHHHHHHHHH
Q 021040           53 DIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVF  132 (318)
Q Consensus        53 ~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (318)
                      |.++++.+.|++.+.+.+...+++++.|+++||+|||+. +..+.++.+++..+...       ....+...    +.+.
T Consensus        70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~-l~~~~~~~~~~~~~~~~-------~~~~~~~~----l~~~  137 (465)
T TIGR00894        70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWS-IGIGMFLSSVISIVIPW-------AAGGGIAL----VVFC  137 (465)
T ss_pred             CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchh-hHHHHHHHHHHHHHHHH-------HHHcCchH----HHHH
Confidence            347899999999999999999999999999999999998 56676666665443210       00111121    2233


Q ss_pred             HHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchhHHHHHHHHHHHHH
Q 021040          133 AAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFI  212 (318)
Q Consensus       133 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~  212 (318)
                      +++.|++.+...+....+++|..+ +++|+++.++.+.+..+|.++++.+.+.+...         ..+|++.+++.+++
T Consensus       138 r~~~G~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~---------~~gw~~~f~i~~~~  207 (465)
T TIGR00894       138 RVIQGLAQGSVSPATHKIIVKWAP-PKERSRLLGMSTSGFQLGTFIFLPISGWLCES---------WGGWPMIFYVFGIV  207 (465)
T ss_pred             HHHHHHhcccchhhHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------cCCCCeehhhhhHH
Confidence            356778888777777788888875 58999999999988888887776655443321         02789888888887


Q ss_pred             HHHHHHHHHhccccccccccc-------------CC---CCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhHHh
Q 021040          213 GCCFVGIFLSRTEEPRLKMGL-------------RG---NSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFY  276 (318)
Q Consensus       213 ~~l~~~~~~~~~~e~~~~~~~-------------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y  276 (318)
                      +++..++.+...+|+++.+++             ++   +.+.+..+++++++|+++...+.+++.....+...+|+|.|
T Consensus       208 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~  287 (465)
T TIGR00894       208 GCAWSLLWFVFPADDPSIHPCISKFEKKYINSSLQGQKGSTRQSLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTF  287 (465)
T ss_pred             HHHHHHHHHHHhcCCcccCCCCCHHHHHHHHhhcccccCCCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777766666666654322110             00   01112358899999999999999999998888999999999


Q ss_pred             hhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 021040          277 VINDLRMGQSAKALVPAIIYICSFIVSILLQVISLKL  313 (318)
Q Consensus       277 l~~~~g~~~~~~~~~~~~~~v~~~i~~~~~~~i~~~~  313 (318)
                      +++.+|.+....+....+..+++++++.+.++++||+
T Consensus       288 l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~  324 (465)
T TIGR00894       288 ISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFL  324 (465)
T ss_pred             HHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999876666555555555566666666555554

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.83  E-value=1.3e-18  Score=165.78  Aligned_cols=260  Identities=15%  Similarity=0.072  Sum_probs=176.6

Q ss_pred             hhcccchHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHH
Q 021040           28 YYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSV  107 (318)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~  107 (318)
                      ...++.+.......+....+|.+.++.|.+..+.+++.+.+.+...++.|+.|+++||+||||. +..+.++.+++....
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~-~~~~~~~~~~~~~~~   84 (485)
T TIGR00711         6 VLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRL-FLISTFAFTLGSLLC   84 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHH-HHHHHHHHHHHHHHH
Confidence            3444555556666667777777777789999999999999999999999999999999999998 566777777765543


Q ss_pred             hCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021040          108 FGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVF  187 (318)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~  187 (318)
                      .       ..+  +.....    +.+++.+++.+...+...+++.|..+ +++|+++.++.+....+|..+++.+++.+.
T Consensus        85 ~-------~~~--~~~~l~----~~~~~~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  150 (485)
T TIGR00711        85 G-------VAP--NLELMI----IFRVIQGFGGGPLIPLSFSTLLNIYP-PEKRGRAMAIWGLTVLVAPALGPTLGGWII  150 (485)
T ss_pred             h-------CcC--CHHHHH----HHHHHHHhhhhhHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHHhhhhhccHhHhc
Confidence            2       122  222222    22345677777777777888889875 578999999988888888777665554433


Q ss_pred             HhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhcccccccccccC-----------------------CCC---chH-
Q 021040          188 SVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLR-----------------------GNS---HAR-  240 (318)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~~~-----------------------~~~---~~~-  240 (318)
                      .          ..+|+|.+++.+.++++..++..+..||++++++++                       ++.   +.. 
T Consensus       151 ~----------~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~  220 (485)
T TIGR00711       151 E----------NYHWRWIFLINVPIGIIVVVVAFFILPRDKPAASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNE  220 (485)
T ss_pred             c----------CcCceehhhhhhHHHHHHHHHHHHHcCCccccccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchH
Confidence            2          257899888877776666666656666643221100                       000   000 


Q ss_pred             -----------------------H--HHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhccccccchhhHHHHHH
Q 021040          241 -----------------------I--SWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAII  295 (318)
Q Consensus       241 -----------------------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~  295 (318)
                                             +  .-.+++|+|+++..++..++..+.......++|.|+++..|.++.+.+......
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~  300 (485)
T TIGR00711       221 ILILSITGLVAIIAFVVWELTDDNPLVDLRLFKYRNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPV  300 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCCccCHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence                                   0  012467888888888888888888888888999999999999876555444444


Q ss_pred             HHHHHHHHHHHHHHHHh
Q 021040          296 YICSFIVSILLQVISLK  312 (318)
Q Consensus       296 ~v~~~i~~~~~~~i~~~  312 (318)
                      .++.++++++.+++.||
T Consensus       301 ~~~~~~~~~~~g~l~~r  317 (485)
T TIGR00711       301 GLAPMLSSPIAGRMGDK  317 (485)
T ss_pred             HHHHHHHHHHHHHHHhh
Confidence            44444444444444444

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.83  E-value=4.8e-18  Score=157.45  Aligned_cols=250  Identities=10%  Similarity=0.015  Sum_probs=160.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHH---HHHHHHHHHHHHHHHhCC
Q 021040           34 MLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIW---HGAGSVLVAVSFSSVFGG  110 (318)
Q Consensus        34 ~~~~~~~~~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~---l~~g~~~~~i~~~~~~~~  110 (318)
                      ++......+..+++|.|++|.|.|..++|++.+++.+...+++|+.|.++||+|||+..   +.++.....+.  ...  
T Consensus        14 ~~~~~~~g~~~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~--~~~--   89 (382)
T PRK11128         14 FGYFFAYGVFLPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLFAVA--FWF--   89 (382)
T ss_pred             HHHHHHHHHHhhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHHHHH--HHH--
Confidence            33445567788999999999999999999999999999999999999999999995321   22222211111  111  


Q ss_pred             CCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021040          111 CMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVS  190 (318)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~  190 (318)
                            . .++.+..++    ...+.+++.+...+...++..+.   +++|++..+.......+|..+++.+++.+.+. 
T Consensus        90 ------~-~~~~~~l~i----~~~l~g~~~~~~~~~~~a~~~~~---~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~-  154 (382)
T PRK11128         90 ------G-AHSFWLLFV----AIGLFNLFFSPLVPLTDALANTW---QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSW-  154 (382)
T ss_pred             ------h-cccHHHHHH----HHHHHHHHHcccccHHHHHHHHH---HhhccCCcchHHHHHHHHHHHHHHHHHHHHHH-
Confidence                  1 112332222    22345555555555555666554   24566666666677778877776666555432 


Q ss_pred             ccCcccchhHHHHHHHHHHHHHHHHHHHHHHhccccccccccc-CCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHH
Q 021040          191 TAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGL-RGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVS  269 (318)
Q Consensus       191 ~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (318)
                               .+|+..+++.++..++. .+..+..||+++++++ +++++..+++++++|||+++......++........
T Consensus       155 ---------~g~~~~f~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~  224 (382)
T PRK11128        155 ---------FGEQAILWILTAGVASM-LLGQLLRPTIMPQGESRQQESAGWPAWKALLKEPTVWRFLLCVSLLQGSHAAY  224 (382)
T ss_pred             ---------cChhHHHHHHHHHHHHH-HHHHHccCCCCCccccccccccccchHHHHHcChhHHHHHHHHHHHHHHhHhH
Confidence                     36787776655443333 3333444554322111 111122456889999999998888888877777778


Q ss_pred             HHHhHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 021040          270 QAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQVISLKL  313 (318)
Q Consensus       270 ~~~~~~yl~~~~g~~~~~~~~~~~~~~v~~~i~~~~~~~i~~~~  313 (318)
                      .+++|.|++| .|.+....+..-.+..++.++..++.+|+.||.
T Consensus       225 ~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~  267 (382)
T PRK11128        225 YGFSAIYWQA-AGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRW  267 (382)
T ss_pred             HHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            8899999966 788876666655555567777777777777763

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.83  E-value=3.6e-18  Score=158.97  Aligned_cols=266  Identities=12%  Similarity=0.078  Sum_probs=153.9

Q ss_pred             hhcccchHHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHH
Q 021040           28 YYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSS  106 (318)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~  106 (318)
                      .+....+.....+....++++.|+++. |+++.++|++.++..+...+.+|+.|+++||+||||.+ ..+....+++...
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~-~~~~~~~~~~~~~   84 (396)
T TIGR00882         6 MFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHL-LWIISGLLVLFAP   84 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHH-HHHHHHHHHHHHH
Confidence            334444555666777889999999985 99999999999999999999999999999999999985 4444443333221


Q ss_pred             HhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 021040          107 VFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIV  186 (318)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l  186 (318)
                      .+.  ..  ..+... ........+..++.+++.+...+...++..|..   ++++...+......++|.++++.+++.+
T Consensus        85 ~~~--~~--~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~---~~~~~~~g~~~~~~~~g~~~g~~~~g~l  156 (396)
T TIGR00882        85 FFI--YV--FGPLLQ-SNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVS---RNSNFEYGKARMFGCVGWALCASIAGIL  156 (396)
T ss_pred             HHH--HH--hhhHHH-HHHHHHHHHHHHHHHHHhccchhhHHHHHHHhh---hhcccccchhhhhcccHHHHHHHHHhhh
Confidence            110  00  000000 001111122223345555555555555555532   2233344444455567766665554332


Q ss_pred             HHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhccccccccccc------CCCCchHHHHHHHHhcHHHHHHHHHHH
Q 021040          187 FSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGL------RGNSHARISWAYWFKKILYYQVALVYM  260 (318)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (318)
                      .           ..+|++.+++.++++++..++.+...+|+++++++      +++++..++.++++|||+++..+...+
T Consensus       157 ~-----------~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~  225 (396)
T TIGR00882       157 F-----------SIDPQIVFWLGSGFALILMLLLMFAKPKAPSSATVANALGANASAFSLKLALELFRQRKFWMFVLYVV  225 (396)
T ss_pred             h-----------ccCchHHHHHHHHHHHHHHHHHHHhCCCCchhhhhhcccccccCCCCHHHHHHHHcCCcHHHHHHHHH
Confidence            2           13688888877777776665554444554322110      111223356789999999887776666


Q ss_pred             HHHHHHHHHHHHhHHhhhhccc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 021040          261 LTRLVVNVSQAYLAFYVINDLR---MGQSAKALVPAIIYICSFIVSILLQVISLKL  313 (318)
Q Consensus       261 ~~~~~~~~~~~~~~~yl~~~~g---~~~~~~~~~~~~~~v~~~i~~~~~~~i~~~~  313 (318)
                      +..........+++.|+++..+   .+....+....+..+...++....+++.||.
T Consensus       226 ~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~  281 (396)
T TIGR00882       226 GVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRI  281 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            6666666666678888887653   3333334333333344444444444444443

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.83  E-value=1.6e-17  Score=155.43  Aligned_cols=266  Identities=11%  Similarity=0.002  Sum_probs=174.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCC
Q 021040           34 MLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMP  113 (318)
Q Consensus        34 ~~~~~~~~~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~  113 (318)
                      +...+...+..+.+|.+.++.|+|+.+.|++.+...+...+++++.|++.||+||||. +..+.++++++......  .+
T Consensus        13 ~~~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~-~~~g~~l~~~g~~l~~~--~~   89 (410)
T TIGR00885        13 ALWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAG-ILLGLFLYALGAFLFWP--AA   89 (410)
T ss_pred             HHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHH-HHHHHHHHHHHHHHHHH--HH
Confidence            3334445555666666655669999999999999999999999999999999999998 67788887777654321  00


Q ss_pred             CcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 021040          114 CRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAK  193 (318)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~  193 (318)
                          ...+...    +++..++.++|.+..+++.++++.+..+ +++|++..+..+...++|..+++.++..+.......
T Consensus        90 ----~~~~~~~----~l~~~~l~G~g~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~  160 (410)
T TIGR00885        90 ----EIMNYTL----FLVGLFILTAGLGFLETAANPYILVMGP-ESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPH  160 (410)
T ss_pred             ----hhccHHH----HHHHHHHHHhhHHHHHhhhhHHHHHHCC-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence                0112221    2223346778888888888888877764 467888889989999999998888876665321000


Q ss_pred             ccc----------------chhHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCCCchHHHHHHHHhcHHHHHHHH
Q 021040          194 THA----------------DLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVAL  257 (318)
Q Consensus       194 ~~~----------------~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (318)
                      ...                ....+||+.+++.+++.++..++.. +.|+++.+++++++.+..++.++++|+|.++..++
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  239 (410)
T TIGR00885       161 QSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIM-LTKMPALNHSDAKQISFSASLSRLARIRHYREGVI  239 (410)
T ss_pred             chhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCCccccccccchhhHHHHHhChhHHHHHH
Confidence            000                0124689988877776665544332 23333211111122233445678899999988887


Q ss_pred             HHHHHHHHHHHHHHHhHHhhhhcc-ccccc----hhhHHHHHHHHHHHHHHHHHHHHHHh
Q 021040          258 VYMLTRLVVNVSQAYLAFYVINDL-RMGQS----AKALVPAIIYICSFIVSILLQVISLK  312 (318)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~yl~~~~-g~~~~----~~~~~~~~~~v~~~i~~~~~~~i~~~  312 (318)
                      ..++.........+|++.|.++.. +.+..    .....-....++-++++.+.||++++
T Consensus       240 ~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~  299 (410)
T TIGR00885       240 AQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAH  299 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH
Confidence            777777777778899999997643 33322    12222234456778888888887775

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.83  E-value=1.2e-17  Score=155.65  Aligned_cols=266  Identities=9%  Similarity=0.002  Sum_probs=164.5

Q ss_pred             CCchhh-hhhcccchHHHHHHHHHHHHHHHHHHHhCCChhH-----HHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHH
Q 021040           21 VGRWSV-LYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRG-----AAAVMLSGQIADGFATIFIGELIDRFGHFKIWHG   94 (318)
Q Consensus        21 ~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~l~~~gls~~~-----~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~   94 (318)
                      .+|.+. ....++.+..........+++|.|+++.|++..+     .|++.++..+...+.+|+.|+++||+||||. +.
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~-~~   88 (408)
T PRK09874         10 INWKRNLTVAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIM-LL   88 (408)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHH-HH
Confidence            334443 3334566777777778889999999988887544     5899999999999999999999999999988 45


Q ss_pred             HHHHHHHHHHHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHH
Q 021040           95 AGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMV  174 (318)
Q Consensus        95 ~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~  174 (318)
                      .+.++.+++......       .  .+.+...+.+    .+.+++.+. .....+.+.+..+ +++|+++.+..+....+
T Consensus        89 ~~~~~~~~~~~~~~~-------~--~~~~~~~~~~----~~~g~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  153 (408)
T PRK09874         89 RSALGMGIVMVLMGL-------A--QNIWQFLILR----ALLGLLGGF-VPNANALIATQVP-RNKSGWALGTLSTGGVS  153 (408)
T ss_pred             HHHHHHHHHHHHHHH-------H--hhHHHHHHHH----HHHHHhhhh-HHhHHHHHHHhcC-HhhhhHHHHHHHHHHHH
Confidence            677666666543321       1  1222222222    234444333 3344566667664 57889999988888888


Q ss_pred             HHHHHHHHHHHHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCCCchHHHHHHHHhcHHHHH
Q 021040          175 ANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQ  254 (318)
Q Consensus       175 g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (318)
                      |..+++.+++.+.+          ..+|++.+++.+++.++..+...+..||++++++++++.+ .++..+.+|+|+++.
T Consensus       154 g~~~~~~~~~~l~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  222 (408)
T PRK09874        154 GALLGPLAGGLLAD----------SYGLRPVFFITASVLFLCFLVTLFCIRENFQPVSKKEMLH-MREVVTSLKNPKLVL  222 (408)
T ss_pred             HHHHHHHHHHHHHH----------HhCHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhH-HHHHHHhCcCCchHH
Confidence            87777666554432          2468888888777776666666666777543322111112 223345567777654


Q ss_pred             H-HHHHHHHHHHHHHHHHHhHHhhhhccccccc---hhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 021040          255 V-ALVYMLTRLVVNVSQAYLAFYVINDLRMGQS---AKALVPAIIYICSFIVSILLQVISLKL  313 (318)
Q Consensus       255 ~-~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~---~~~~~~~~~~v~~~i~~~~~~~i~~~~  313 (318)
                      . ....++..........+++.|..+..+....   ..+.+..+..++++++....++++||+
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~  285 (408)
T PRK09874        223 SLFVTTLIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRI  285 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            3 3333444445555667788888876443221   122233333455556665566666654

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.82  E-value=8.9e-18  Score=157.57  Aligned_cols=263  Identities=12%  Similarity=0.065  Sum_probs=154.9

Q ss_pred             chhhhhhcccchHHHHHHHHHHHHHHHHHH-HhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHH
Q 021040           23 RWSVLYYGSGHMLNDITAACWFTYLLLFLT-DIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVA  101 (318)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~  101 (318)
                      ++..+...++.+......... .+..+.+. +.|+|+.+.+++.++..+...+++|+.|+++||+|||+. +..+.++.+
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~-l~~~~~~~~   94 (426)
T PRK12307         17 KNALFSAWLGYVFDGFDFMLI-FYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPL-MMWSIVAYS   94 (426)
T ss_pred             HHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHH-HHHHHHHHH
Confidence            333333334444333333333 33444444 469999999999999999999999999999999999988 567777777


Q ss_pred             HHHHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHH
Q 021040          102 VSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYA  181 (318)
Q Consensus       102 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~  181 (318)
                      ++......       .+  +.+...    +.+.+.+++.+...+...+++.|..+ +++|+++.++.+.+..+|.++++.
T Consensus        95 ~~~~~~~~-------~~--~~~~l~----~~r~l~G~g~g~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~lg~~~~~~  160 (426)
T PRK12307         95 VGTGLSGL-------AS--GVIMLT----LSRFIVGMGMAGEYACASTYAVESWP-KHLKSKASAFLVSGFGIGNIIAAY  160 (426)
T ss_pred             HHHHHHHH-------Hh--HHHHHH----HHHHHHHHHHhhHHHHHHHHHHHhCC-HhHhhHhhhHHHHHHhHHHHHHHH
Confidence            76543321       11  122222    22345677777666666778888875 578999999988887888776654


Q ss_pred             HHHHHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhcccccccccc----cCC--CC----chHHHHHHHHhcHH
Q 021040          182 IAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMG----LRG--NS----HARISWAYWFKKIL  251 (318)
Q Consensus       182 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~----~~~--~~----~~~~~~~~~~~~~~  251 (318)
                      +.+.+..          ..+|++.+++.++. .+..+......||+++.++    +++  ++    .....+++++|+|.
T Consensus       161 l~~~l~~----------~~~w~~~f~i~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (426)
T PRK12307        161 FMPSFAE----------AYGWRAAFFVGLLP-VLLVIYIRARAPESKEWEEAKLSGKGKHSQSAWSVFSLSMKGLFNRAQ  229 (426)
T ss_pred             HHHHHcc----------cCCHHHHHHHHHHH-HHHHHHHHHHCCCChHHHHhhhhccccccccchhhhhHHHHHHHhhch
Confidence            4333221          24789888764332 2222222223455422110    000  00    01235778888888


Q ss_pred             HHHHHHHHHHHH---HHHHHHHHHhHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 021040          252 YYQVALVYMLTR---LVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQVISLKL  313 (318)
Q Consensus       252 ~~~~~~~~~~~~---~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~v~~~i~~~~~~~i~~~~  313 (318)
                      ++..........   ........++|.|+++. |.++...+....+..++.+++.++.+++.||+
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~  293 (426)
T PRK12307        230 FPLTLCVFIVLFSIFGANWPIFGLLPTYLAGE-GFDTGVVSNLMTAAAFGTVLGNIVWGLCADRI  293 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            765443332222   22234567889998874 77765544444444445555555555555543

>PRK03699 putative transporter; Provisional

Probab=99.82  E-value=1.4e-17  Score=155.05  Aligned_cols=251  Identities=9%  Similarity=-0.008  Sum_probs=154.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCC
Q 021040           34 MLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMP  113 (318)
Q Consensus        34 ~~~~~~~~~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~  113 (318)
                      +............++.+.++.|+|.++.|++.+...+...+++++.|+++||+||||. +..+.++.+++......    
T Consensus        17 ~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~-~~~~~~~~~i~~~l~~~----   91 (394)
T PRK03699         17 ALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQ-LIFGFALMILAVAGLMF----   91 (394)
T ss_pred             HHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-HHHHHHHHHHHHHHHHH----
Confidence            3333444445556666666679999999999999999999999999999999999998 56677776666553321    


Q ss_pred             CcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 021040          114 CRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAK  193 (318)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~  193 (318)
                         .+  +.....    +.+.+.+++.+...+...+.+.|..+ +++|++..+..+....+|..+++.+.+.+...    
T Consensus        92 ---~~--~~~~~~----~~~~l~G~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~----  157 (394)
T PRK03699         92 ---SH--SLALFS----IAMFVLGVVSGITMSIGTFLITHVYE-GKQRGSRLLFTDSFFSMAGMIFPIIAAYLLAR----  157 (394)
T ss_pred             ---cc--hHHHHH----HHHHHHHHhhHhhccchhHHhhhhcc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----
Confidence               11  122222    22234556655555555667778774 46788888777666666666555444333321    


Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHhc-ccccccccccCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHH
Q 021040          194 THADLENQYRWIAYSSIFIGCCFVGIFLSR-TEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAY  272 (318)
Q Consensus       194 ~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (318)
                           ..+||+.+.+.+++.++..++.+.. .||.+++ +++++++   ..++ ..+|.++...+..++..........|
T Consensus       158 -----~~gw~~~f~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (394)
T PRK03699        158 -----SIEWYWVYACIGLVYVAIFILTLFSEFPALGKH-APKADKP---VAKE-KWGIGVLFLAIAALLYILAQLTFISW  227 (394)
T ss_pred             -----cccHHHHHHHHHHHHHHHHHHHHhcCCcccccc-CccccCc---cccc-cCChHHHHHHHHHHHHHHHHHHHHHH
Confidence                 2479999887776665554433321 1221111 1111111   1111 23566666666667776777788899


Q ss_pred             hHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 021040          273 LAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQVISLKL  313 (318)
Q Consensus       273 ~~~yl~~~~g~~~~~~~~~~~~~~v~~~i~~~~~~~i~~~~  313 (318)
                      +|.|+++++|++..+.+.+.....++..++..+.++++||+
T Consensus       228 ~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~  268 (394)
T PRK03699        228 VPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFF  268 (394)
T ss_pred             HHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999876555544444445555555555555553

>PRK11043 putative transporter; Provisional

Probab=99.82  E-value=4.1e-17  Score=152.04  Aligned_cols=244  Identities=11%  Similarity=0.056  Sum_probs=154.5

Q ss_pred             HHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCccc
Q 021040           38 ITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRIL  117 (318)
Q Consensus        38 ~~~~~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~  117 (318)
                      ....+..+.++.+.++.|.+++++|++.++..+...+++++.|+++||+||||. +..+..+.+++......       .
T Consensus        20 ~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~-~~~~~~~~~~~~~~~~~-------~   91 (401)
T PRK11043         20 LATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPV-LLAGLSLFALGSLGMLW-------V   91 (401)
T ss_pred             HHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHH-HHHHHHHHHHHHHHHHH-------h
Confidence            444455555555566679999999999999999999999999999999999998 56677666666543321       1


Q ss_pred             CccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccc
Q 021040          118 STSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHAD  197 (318)
Q Consensus       118 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~  197 (318)
                      +  +.....+.    +.+.+++.+...+...+++.|..+ +++|++..+..+....++..+++.+++.+.+         
T Consensus        92 ~--~~~~l~~~----~~l~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~---------  155 (401)
T PRK11043         92 E--SAAQLLVL----RFVQAVGVCSAAVIWQALVIDRYP-AQKANRVFATIMPLVALSPALAPLLGAWLLN---------  155 (401)
T ss_pred             c--CHHHHHHH----HHHHHhhhHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------
Confidence            1  22222222    234555555555555677778765 4567777666666666666666555544432         


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhHHhh
Q 021040          198 LENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYV  277 (318)
Q Consensus       198 ~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl  277 (318)
                       ..+|++.+++.+++.++..++... .+|+++++   ++++.+.++++++|+|+++.......+.........++.|.++
T Consensus       156 -~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  230 (401)
T PRK11043        156 -HFGWQAIFATLFAITLLLILPTLR-LKPSKKAR---KQSQDALTFKQLLKSKTYLGNVLIFAACSAAFFAWLTGSPFIL  230 (401)
T ss_pred             -cCChHHHHHHHHHHHHHHHHHHHH-cCCCCCcc---ccchHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence             246888887777666665554433 44433221   1122345788899999988776666666666666777889888


Q ss_pred             hhccccccchhhHHHHH----HHHHHHHHHHHHHHHHH
Q 021040          278 INDLRMGQSAKALVPAI----IYICSFIVSILLQVISL  311 (318)
Q Consensus       278 ~~~~g~~~~~~~~~~~~----~~v~~~i~~~~~~~i~~  311 (318)
                      ++ .|.+....+..-..    ..+++++++.+.+|+++
T Consensus       231 ~~-~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~  267 (401)
T PRK11043        231 EQ-MGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGG  267 (401)
T ss_pred             HH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH
Confidence            65 68877555443322    23344444555555543

>TIGR00895 2A0115 benzoate transport

Probab=99.81  E-value=5.5e-18  Score=156.54  Aligned_cols=248  Identities=15%  Similarity=0.077  Sum_probs=153.6

Q ss_pred             HHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCc
Q 021040           40 AACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILST  119 (318)
Q Consensus        40 ~~~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~  119 (318)
                      ......+.|.+.++.|.++.+.|++.++..+...+++++.|+++||+|||+. +..+.++.+++......       .+ 
T Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~-~~~~~~~~~~~~~~~~~-------~~-  103 (398)
T TIGR00895        33 LAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRV-LLWSILLFSVFTLLCAL-------AT-  103 (398)
T ss_pred             HHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHH-HHHHHHHHHHHHHHHHH-------cc-
Confidence            3334444455555569999999999999999999999999999999999887 56677666666554331       11 


Q ss_pred             cchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchh
Q 021040          120 STLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLE  199 (318)
Q Consensus       120 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~  199 (318)
                       +.....    +..++.+++.+...+...+++.|..+ +++|+++.++.+.+..+|..+++.+++.+..          .
T Consensus       104 -~~~~~~----~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~----------~  167 (398)
T TIGR00895       104 -NVTQLL----ILRFLAGLGLGGLMPNLNALVSEYAP-KRFRGTAVGLMFCGYPIGAAVGGFLAGWLIP----------V  167 (398)
T ss_pred             -chHHHH----HHHHHHhcccccchhhHHHHHHHHcC-HHhhchhHhhHhhHHHHHHHHHHHHHHHHhh----------c
Confidence             122222    22245667777777777888888875 5789999999888888888877666544432          2


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccccccc---c--c---------------------cC--CC-CchHHHHHHHHhc-
Q 021040          200 NQYRWIAYSSIFIGCCFVGIFLSRTEEPRLK---M--G---------------------LR--GN-SHARISWAYWFKK-  249 (318)
Q Consensus       200 ~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~---~--~---------------------~~--~~-~~~~~~~~~~~~~-  249 (318)
                      .+|++.+++.+++..+..++.....||+++.   +  +                     ++  ++ +..++.++.++++ 
T Consensus       168 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (398)
T TIGR00895       168 FGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSKRPETVRRIVNAIAPQMQAEAQSALPEQKATQGTKRSVFKALFQGK  247 (398)
T ss_pred             ccceeehhhhhhHHHHHHHHHHHhCCCCChHHHhcCHHHHHHHHHHHHHhccccccccccccccccchhhHHHHHHhcch
Confidence            4677777766655555555555666664321   0  0                     00  00 1111223333333 


Q ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHhHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 021040          250 --ILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQVISLKL  313 (318)
Q Consensus       250 --~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~v~~~i~~~~~~~i~~~~  313 (318)
                        +..+......++..........++| ++.+..|.+....+.......++.+++.++.+++.||+
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  312 (398)
T TIGR00895       248 TARITVLLWLLYFMLLVGVYFLTNWLP-KLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRL  312 (398)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence              3344444555555666667777888 55666788776555444444445555555555555443

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.81  E-value=1.2e-17  Score=154.70  Aligned_cols=255  Identities=14%  Similarity=0.104  Sum_probs=157.8

Q ss_pred             hhhhcccchHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHH
Q 021040           26 VLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFS  105 (318)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~  105 (318)
                      .+....+.+...+......+++|.+.++.|.|..++|++.+.+.+...+++|+.|+++||+||||. +..+.++.+++..
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~-~~~~~~~~~~~~~   86 (381)
T PRK03633          8 VLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRS-YYLASLIFAAGCA   86 (381)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence            344556666777788888899999999999999999999999999999999999999999999998 4567777776654


Q ss_pred             HHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 021040          106 SVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFI  185 (318)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~  185 (318)
                      ...       +.+  +.+...+    .+++.+++.+...+...+.+.+..+ +++|++..+..+.+.++|..+++.+++.
T Consensus        87 ~~~-------~~~--~~~~l~~----~~~l~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~g~~~~~~  152 (381)
T PRK03633         87 GLG-------LMV--GFWSWLA----WRFVAGIGCAMIWVVVESALMCSGT-SRNRGRLLAAYMMVYYLGTVLGQLLVSK  152 (381)
T ss_pred             HHH-------Hhc--cHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            332       111  2222222    2345667766665555555556654 4689999999888888888776665544


Q ss_pred             HHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHH
Q 021040          186 VFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLV  265 (318)
Q Consensus       186 l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (318)
                      +.....        ....|..   +........+.+...+|++  ++++    ..++.++.+|||.++......++....
T Consensus       153 l~~~~~--------~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (381)
T PRK03633        153 VSTELM--------SVLPWVT---GLVLAAILPLLFTRILNQQ--AENH----DSTSIWPMLKLRQARLGVNGCIISGIV  215 (381)
T ss_pred             cccccc--------chHHHHH---HHHHHHHHHHHHhcccCCC--CCCC----CCCCHHHHHHhcchHHHHHHHHHHHHH
Confidence            332110        1112221   1111111111112222221  1111    112346678898887655444444455


Q ss_pred             HHHHHHHhHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 021040          266 VNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQVISLKL  313 (318)
Q Consensus       266 ~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~v~~~i~~~~~~~i~~~~  313 (318)
                      .....+++|.|+++ .|.+....+..-....++++++....+++.||.
T Consensus       216 ~~~~~~~lp~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~  262 (381)
T PRK03633        216 LGSLYGLMPLYLNH-QGMSDASIGFWMALLVSAGILGQWPIGRLADRF  262 (381)
T ss_pred             HHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHc
Confidence            55666788999987 477765555444444455555555555555553

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.81  E-value=5.4e-18  Score=159.05  Aligned_cols=267  Identities=11%  Similarity=0.060  Sum_probs=146.2

Q ss_pred             hhhhhcccchHHHHHHHHHHHHHHHHHHH-hCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHH
Q 021040           25 SVLYYGSGHMLNDITAACWFTYLLLFLTD-IGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVS  103 (318)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~  103 (318)
                      +.+...+..+.....++...++++.|+++ .|+|+.++|++.++..+...+++|+.|.++||+||||.. .++....++.
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~-~~~~~~~~~~   89 (420)
T PRK09528         11 NYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHL-LWIISGLLVL   89 (420)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHH-HHHHHHHHHH
Confidence            33334445555566677788999999998 499999999999999999999999999999999999984 4444333333


Q ss_pred             HHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHH
Q 021040          104 FSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIA  183 (318)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~  183 (318)
                      ....+.  ..  ..+.. .........+..+..+.+..........+..+.   .++|+...+..+...++|..+++.++
T Consensus        90 ~~~~~~--~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~g~~~g~~~~~~~~g~~i~~~~~  161 (420)
T PRK09528         90 FGPFFI--YV--FAPLL-QYNILLGAIVGGIYLGFGFLAGAGAIEAYIERV---SRRSGFEYGRARMWGSLGWALCAFIA  161 (420)
T ss_pred             HHHHHH--HH--HHHHH-HHHHHHHHHHHHHHhhhhhccchhhhhhHHHHH---HhhccccchhhHHhhhHHHHHHHHHH
Confidence            211110  00  00000 000000011101111222222111122222111   23455566666666677777766555


Q ss_pred             HHHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhccccccccc---c-c--CCCCchHHHHHHHHhcHHHHHHHH
Q 021040          184 FIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKM---G-L--RGNSHARISWAYWFKKILYYQVAL  257 (318)
Q Consensus       184 ~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~---~-~--~~~~~~~~~~~~~~~~~~~~~~~~  257 (318)
                      +.+..           .+|++.+++.+++++++.++.++..+|+++++   + +  ++++...+..++.+|||+++.+.+
T Consensus       162 g~l~~-----------~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~l  230 (420)
T PRK09528        162 GILFN-----------INPQINFWLGSGSALILLVLLFFAKPDAPSTAKVANALGANASAVSLKDALALLKLPKFWFLVL  230 (420)
T ss_pred             HHHHh-----------cCchHhHHHHHHHHHHHHHHHhcccccccchhhhccchhcccccccHHHHHHHccCCCeEeehH
Confidence            44431           35777887777666666555544444443221   1 1  112223455667889998877666


Q ss_pred             HHHHHHHHHHHHHHHhHHhhhhcc---ccccchhhHHHHHHH----HHHHHHHHHHHHHHH
Q 021040          258 VYMLTRLVVNVSQAYLAFYVINDL---RMGQSAKALVPAIIY----ICSFIVSILLQVISL  311 (318)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~yl~~~~---g~~~~~~~~~~~~~~----v~~~i~~~~~~~i~~  311 (318)
                      ...+..........++|.|+.+..   +.+....+.+..+..    ++..+++.+.||+++
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~  291 (420)
T PRK09528        231 YVIGVACFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGA  291 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence            555555555555667788877654   233333344333333    344455555555544

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.81  E-value=4.5e-17  Score=151.52  Aligned_cols=265  Identities=11%  Similarity=0.005  Sum_probs=152.7

Q ss_pred             CCCCCchhhhhhcccchHHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHH
Q 021040           18 TQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAG   96 (318)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g   96 (318)
                      .++++.+ ...+-++.+...+..+...+++++|+++. |+|.+++|++.+...+...+.+++.|.++||+||||.++..+
T Consensus        10 ~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~dr~g~r~~~~~~~   88 (393)
T PRK15011         10 AKSFDLT-STAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGRSDKRGDRKSLIVFC   88 (393)
T ss_pred             chhccch-hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHH
Confidence            3444333 33444556777778888889999999875 999999999988887777777777766799999999865555


Q ss_pred             HHHHHHHHHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccch--hHHHHHHHHHHHH
Q 021040           97 SVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSR--VVLTSCRNAFTMV  174 (318)
Q Consensus        97 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R--~~~~~~~~~~~~~  174 (318)
                      .+..+++.....       +.  .+.+..++    ...+.+...+...+...++..|..+ +++|  +...+..+.+.++
T Consensus        89 ~~~~~~~~~~~~-------~~--~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l  154 (393)
T PRK15011         89 CLLGVLACTLFA-------WN--RNYFVLLF----VGVFLSSFGSTANPQMFALAREHAD-KTGREAVMFSSFLRAQVSL  154 (393)
T ss_pred             HHHHHHHHHHHH-------Hh--hHHHHHHH----HHHHHHHHHHhhHHHHHHHHHHHhh-hccchHHHHHHHHHHHHHH
Confidence            554444433221       11  12222111    1122333333334444555555443 3334  2345677777777


Q ss_pred             HHHHHHHHHHHHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCCCchHHHHHHHHhcH-HHH
Q 021040          175 ANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKI-LYY  253 (318)
Q Consensus       175 g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~-~~~  253 (318)
                      |.++++.+++.+..          ..+||+.+++.++++++..+......||.++++++++  +..+   ...+++ +.+
T Consensus       155 g~~~g~~i~~~l~~----------~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~~~  219 (393)
T PRK15011        155 AWVIGPPLAYALAM----------GFSFTVMYLSAAVAFIVCGVMVWLFLPSMRKELPLAT--GTLE---APRRNRRDTL  219 (393)
T ss_pred             HHHHhhHHHHHHHH----------hcChHHHHHHHHHHHHHHHHHHHhhcCccCCCCcccc--cccc---ccccccccHH
Confidence            87776665544432          2479988888887777777776677787643322111  1111   112332 233


Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 021040          254 QVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQVISLK  312 (318)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~v~~~i~~~~~~~i~~~  312 (318)
                      .........+........+.|.|+++.+|.++...+.+..+..++++++.++.++++||
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr  278 (393)
T PRK15011        220 LLFVICTLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKR  278 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333444444455566789999999889887655444333334444444444444444

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.81  E-value=3.2e-17  Score=153.68  Aligned_cols=258  Identities=7%  Similarity=-0.046  Sum_probs=167.1

Q ss_pred             HHHHHHHHHHHHHHH-HhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcc
Q 021040           38 ITAACWFTYLLLFLT-DIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRI  116 (318)
Q Consensus        38 ~~~~~~~~~l~~~l~-~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~  116 (318)
                      ..+.++.+..+..-+ ++|+|++|.+++.++..+..++.+++.|.+.||+|.||. +.++.++.++....... .+.   
T Consensus        48 ~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v-~~~~~ll~~i~~~~~~~-a~~---  122 (462)
T PRK15034         48 CVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRW-TVFSTAILIIPCVWLGI-AVQ---  122 (462)
T ss_pred             HHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHH-HHHHHHHHHHHHHHHHH-HHc---
Confidence            345555554444444 469999999999999999999999999999999999998 45676666666543321 000   


Q ss_pred             cCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhc
Q 021040          117 LSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFS-----VST  191 (318)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~-----~~~  191 (318)
                      ....+....    .+.+++.+++ +...++....+++..+ ++||+++.++.....++|..+++.+.++++.     .++
T Consensus       123 ~~~~s~~~l----li~r~l~Gig-g~~f~~~~~~vs~wfp-~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G  196 (462)
T PRK15034        123 NPNTPFGIF----IVIALLCGFA-GANFASSMGNISFFFP-KAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLG  196 (462)
T ss_pred             ccCCCHHHH----HHHHHHHHHH-HHhHHHHHHHHHHHCC-HhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhc
Confidence            001122322    2223455555 3344455666777765 5789999999887788888877777655443     121


Q ss_pred             cCcc---cchhHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHH
Q 021040          192 AKTH---ADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNV  268 (318)
Q Consensus       192 ~~~~---~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (318)
                      ....   .....+|+...++.+.+.++..++.+++.+|.++.      +...+++++++|||..|.+++.+++.+.++..
T Consensus       197 ~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~~------~~~~~~~~~vlk~~~~Wllslly~~tFG~fvg  270 (462)
T PRK15034        197 VNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIASS------RASIADQLPVLQRLHLWLLSLLYLATFGSFIG  270 (462)
T ss_pred             cccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCcccc------ccCHHHHHHHhCCCchhHHHHHHHHHHHHHHH
Confidence            1000   00134577777777766666666666655443221      12245677899999999999999888888888


Q ss_pred             HHHHhHHhhhhcccccc-ch-hhHHHHHHHHHHHHHHHHHHHHHHh
Q 021040          269 SQAYLAFYVINDLRMGQ-SA-KALVPAIIYICSFIVSILLQVISLK  312 (318)
Q Consensus       269 ~~~~~~~yl~~~~g~~~-~~-~~~~~~~~~v~~~i~~~~~~~i~~~  312 (318)
                      +..++|.|.++.++-.. .. ....+.+..+...+++++.||++++
T Consensus       271 ~s~~lp~~~~~~~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~  316 (462)
T PRK15034        271 FSAGFAMLAKTQFPDVNILRLAFFGPFIGAIARSVGGAISDKFGGV  316 (462)
T ss_pred             HHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCch
Confidence            88899999988663221 11 1222445556667888888887655

>TIGR00896 CynX cyanate transporter

Probab=99.81  E-value=3.2e-17  Score=150.27  Aligned_cols=241  Identities=13%  Similarity=0.064  Sum_probs=158.8

Q ss_pred             HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccch
Q 021040           43 WFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTL  122 (318)
Q Consensus        43 ~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~  122 (318)
                      ..+.+|.+.++.|+|.++.|++.++..+...+++++.|+++||+||||. +.++.+...++.....        .+  +.
T Consensus        19 ~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~-~~~~~~~~~~~~~~~~--------~~--~~   87 (355)
T TIGR00896        19 VGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERS-VAAGLLLIAAGILIRS--------AP--GT   87 (355)
T ss_pred             CcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHH-HHHHHHHHHHHHHHHH--------hc--cH
Confidence            3456677777779999999999999999999999999999999999998 5667666655544321        11  12


Q ss_pred             hHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchhHHH
Q 021040          123 KVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQY  202 (318)
Q Consensus       123 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~  202 (318)
                      ...+    +.+++.+++.+.........+.|..  +++|+++.+..+.+.++|..+++.+++++.+..+        .+|
T Consensus        88 ~~l~----~~~~~~g~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~--------~~w  153 (355)
T TIGR00896        88 ALLF----AGTALIGVGIAIINVLLPSLIKRDF--PQRVGLMTGLYSMALMGGAALAAAATVPLAQHSG--------GHW  153 (355)
T ss_pred             HHHH----HHHHHHHHHHHHHhccchHHHHHhC--cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--------hhH
Confidence            2222    2223455665555544555666655  3578999999988888888887777666654311        248


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcccccccccccCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhccc
Q 021040          203 RWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLR  282 (318)
Q Consensus       203 ~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g  282 (318)
                      ++.+.+.++..++...   ...+|.+++++++ +...+...++++|||.++.......+....+....+|+|.|+++ .|
T Consensus       154 ~~~f~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~g  228 (355)
T TIGR00896       154 QQALAWWALPALLALL---AWIPQVRRRVAAN-QTTTRLTPVRIWRSPLAWQVTVFFGLQSGLYYSLIGWLPAILIS-HG  228 (355)
T ss_pred             HHHHHHHHHHHHHHHH---HHhhhhccccCCC-CCCCCCCCchhhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cC
Confidence            8777665544333322   2234432221111 11112235677899998877776666667777788899999987 58


Q ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 021040          283 MGQSAKALVPAIIYICSFIVSILLQVISLKL  313 (318)
Q Consensus       283 ~~~~~~~~~~~~~~v~~~i~~~~~~~i~~~~  313 (318)
                      .+....+.+..+..++.+++.++.+++.||.
T Consensus       229 ~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~  259 (355)
T TIGR00896       229 ASAATAGSLLALMQLAQAASALLIPALARRV  259 (355)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhHHHHHhhh
Confidence            8876666666666667777777777777665

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.80  E-value=7.5e-17  Score=154.37  Aligned_cols=273  Identities=11%  Similarity=0.085  Sum_probs=158.6

Q ss_pred             hhhcccchHHHHHHHHHHHHHHHHHHHh-C--CChh--HHHH--HHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHH
Q 021040           27 LYYGSGHMLNDITAACWFTYLLLFLTDI-G--LSPR--GAAA--VMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVL   99 (318)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g--ls~~--~~g~--i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~   99 (318)
                      +.-.++.+....-. ....+..+++.+. +  .++.  .++.  +.++..+...+++++.|+++||+||||. +.++.++
T Consensus        19 ~~~~~g~~~~~~d~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~-l~~~~~l   96 (490)
T PRK10642         19 TAASLGNAMEWFDF-GVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKI-LAITIVI   96 (490)
T ss_pred             HHHHHHHHHHHHHH-HHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHH-HHHHHHH
Confidence            33345554433333 3445566666653 3  3332  1222  2466778899999999999999999998 5678888


Q ss_pred             HHHHHHHHhCCCCCCcccCccch--hHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHH
Q 021040          100 VAVSFSSVFGGCMPCRILSTSTL--KVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANL  177 (318)
Q Consensus       100 ~~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~  177 (318)
                      ++++......       .++...  .+....+++.+++.|++.+...++..+++.|..| +++|+++.++.+.+..+|..
T Consensus        97 ~~i~~~~~a~-------~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p-~~~Rg~~~~~~~~~~~~G~~  168 (490)
T PRK10642         97 MSISTFCIGL-------IPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSP-DRKRGFMGSWLDFGSIAGFV  168 (490)
T ss_pred             HHHHHHHHHh-------cccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCC-CCCCcHHHHHHHHHHHHHHH
Confidence            8877654431       222110  0111123344456778888877778888999886 47899999988888778877


Q ss_pred             HHHHHHHHHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhcccccccccc-----cC-CC----CchHHHHHHHH
Q 021040          178 SLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMG-----LR-GN----SHARISWAYWF  247 (318)
Q Consensus       178 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~-----~~-~~----~~~~~~~~~~~  247 (318)
                      +++.+...+...+....  ....+||+.+++.++++++ .++....+||+++..+     ++ ++    ++.+.++++++
T Consensus       169 lg~~~~~~~~~~~~~~~--~~~~gWR~~f~i~~~~~l~-~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (490)
T PRK10642        169 LGAGVVVLISTIVGEAN--FLDWGWRIPFFIALPLGII-GLYLRHALEETPAFQQHVDKLEQGDREGLQDGPKVSFKEIA  245 (490)
T ss_pred             HHHHHHHHHHHhcCHHH--hcCccHHHHHHHHHHHHHH-HHHHHHcCCCChhHHHHHHhhhhhccccccccccCCHHHHH
Confidence            77655433333221000  0125799999876655443 3444456788643110     00 00    01123456666


Q ss_pred             hc-HH-HHHHHHHHHHHHHHHHHHHHHhHHhhhhccccccchhhHHHHH----HHHHHHHHHHHHHHHHHh
Q 021040          248 KK-IL-YYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAI----IYICSFIVSILLQVISLK  312 (318)
Q Consensus       248 ~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~----~~v~~~i~~~~~~~i~~~  312 (318)
                      ++ ++ +.......++....++...+|+|.|+++.+|.+..........    ..+++.+++.+.||+++|
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr  316 (490)
T PRK10642        246 TKHWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRR  316 (490)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence            53 22 2222233344556677788899999998888876433322222    234445566666776665

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.79  E-value=1.6e-17  Score=156.42  Aligned_cols=235  Identities=12%  Similarity=0.104  Sum_probs=174.6

Q ss_pred             CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccchhHHHHHHHHHHH
Q 021040           55 GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAA  134 (318)
Q Consensus        55 gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (318)
                      +.++.+-|++++....+..+++.+.|+++||+|-||++ ..+.++.+++.++.     |.+.  ..+..    ..++.++
T Consensus        69 ~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~-~~~~~~sa~~t~l~-----P~aa--~~~~~----~~~~~R~  136 (466)
T KOG2532|consen   69 DWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVF-FISGLISALLTLLT-----PLAA--SIGFY----LLLVLRF  136 (466)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHH-HHHHHHHHHHHHHH-----HHHH--Hhcch----hhHHHHH
Confidence            66888999999999999999999999999999999994 56777777765543     2111  11112    2234456


Q ss_pred             HHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchhHHHHHHHHHHHHHHH
Q 021040          135 IFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGC  214 (318)
Q Consensus       135 l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~  214 (318)
                      +.|++.+...+....+.....| ++||++..+....+..+|.+++..+++.+...         ..+|++.|++.+++++
T Consensus       137 lqGl~~g~~~pa~~~i~~~W~P-~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s---------~~GW~sifY~~g~~g~  206 (466)
T KOG2532|consen  137 LQGLGQGVLFPAIGSILAKWAP-PNERSTFIAILTAGSQLGTIITMPVSGLLCES---------SLGWPSIFYVFGIVGL  206 (466)
T ss_pred             HhHHHHhHHHhhhhceeeeECC-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcc---------CCCCchHHHHHHHHHH
Confidence            7788888888788888888776 68999999999888888877654333333321         2579999999999999


Q ss_pred             HHHHHHHhcccccccccc-----c-----C----C--CCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhHHhhh
Q 021040          215 CFVGIFLSRTEEPRLKMG-----L-----R----G--NSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVI  278 (318)
Q Consensus       215 l~~~~~~~~~~e~~~~~~-----~-----~----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~  278 (318)
                      +..++++.+..|+|.+++     |     +    +  +++...+|+++++++++|...+..++...+.+...+|.|.|++
T Consensus       207 i~~~~w~~~~~d~P~~h~~is~~El~~I~~~k~~~~~~~~~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~  286 (466)
T KOG2532|consen  207 IWFILWFLFYSDSPSKHPNISEKELKYIEKGKSEAHVKKKPPVPYKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLK  286 (466)
T ss_pred             HHHHHHHHHhcCCcccCCCCCHHHHHHHHhcccccccCCCCCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence            999988888877654421     0     0    0  1113457999999999999999999999999999999999999


Q ss_pred             hccccccchhhHHHHHHH----HHHHHHHHHHHHHHH
Q 021040          279 NDLRMGQSAKALVPAIIY----ICSFIVSILLQVISL  311 (318)
Q Consensus       279 ~~~g~~~~~~~~~~~~~~----v~~~i~~~~~~~i~~  311 (318)
                      +.+|++..+.+.+..+-+    +..++++.+.||+..
T Consensus       287 ~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~  323 (466)
T KOG2532|consen  287 EVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTF  323 (466)
T ss_pred             HHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            999999765554444333    555666666666554

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.79  E-value=8.5e-17  Score=148.27  Aligned_cols=255  Identities=15%  Similarity=0.049  Sum_probs=151.7

Q ss_pred             HHHHHHHHh---CCChhHHHHHHHH-----HHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCccc
Q 021040           46 YLLLFLTDI---GLSPRGAAAVMLS-----GQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRIL  117 (318)
Q Consensus        46 ~l~~~l~~~---gls~~~~g~i~~~-----~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~  117 (318)
                      +..+++.+.   +.++.+.+.+.+.     ..+...+++|+.|+++||+||||. +..+.++..++......  .+    
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~-l~~~~~~~~~~~~~~~~--~~----   86 (394)
T TIGR00883        14 FAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKT-LVITLLMMGIGTLLIGL--LP----   86 (394)
T ss_pred             HHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHH-HHHHHHHHHHHHHHHhh--CC----
Confidence            444555443   3556777765543     334445788999999999999998 45677777777554432  11    


Q ss_pred             Cccch--hHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcc
Q 021040          118 STSTL--KVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTH  195 (318)
Q Consensus       118 ~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~  195 (318)
                       +...  .+....+.+.+++.+++.+...+...+++.|..+ +++|++..+..+.+..+|.++++.++..+...++..  
T Consensus        87 -~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~--  162 (394)
T TIGR00883        87 -SYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAP-PGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDD--  162 (394)
T ss_pred             -ChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCC-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH--
Confidence             1100  0111122333345667766666666778888875 578999999999888888888776654333222110  


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHhcccccccccc-cCCCCchHHHHHHHHhcHH--HHHHHHHHHHHHHHHHHHHHH
Q 021040          196 ADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMG-LRGNSHARISWAYWFKKIL--YYQVALVYMLTRLVVNVSQAY  272 (318)
Q Consensus       196 ~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  272 (318)
                      .....+|++.+.+.+++.++.. ......||+++.++ ++++++.++++++.+|+++  ++......++.........++
T Consensus       163 ~~~~~~w~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (394)
T TIGR00883       163 ALLEWGWRIPFLVSAVLVLIGL-YLRRNLEETPVFEKAQEKHKKKRGPIRETLTKHRKPFLLGLGLVIATTTTFYLITTY  241 (394)
T ss_pred             HhhccchHHHHHHHHHHHHHHH-HHHHhcCCChhHHHHHhccccccCCHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            0012468888776655544433 33344566543221 1112222345667777765  766667777777777788899


Q ss_pred             hHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 021040          273 LAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQVISLK  312 (318)
Q Consensus       273 ~~~yl~~~~g~~~~~~~~~~~~~~v~~~i~~~~~~~i~~~  312 (318)
                      +|.|++++.|.+....+.......+.+.++..+.++++||
T Consensus       242 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr  281 (394)
T TIGR00883       242 LPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDR  281 (394)
T ss_pred             HHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999888887655544444444444444444444444

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.79  E-value=2.5e-16  Score=146.34  Aligned_cols=256  Identities=12%  Similarity=0.004  Sum_probs=161.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhCCChhHHHHH--HHHHHHHHHHHhhhhHH-HhhhccCchHHHHHHHHHHHHHHHHHhCC
Q 021040           34 MLNDITAACWFTYLLLFLTDIGLSPRGAAAV--MLSGQIADGFATIFIGE-LIDRFGHFKIWHGAGSVLVAVSFSSVFGG  110 (318)
Q Consensus        34 ~~~~~~~~~~~~~l~~~l~~~gls~~~~g~i--~~~~~i~~~i~~p~~G~-lsDr~Grr~~~l~~g~~~~~i~~~~~~~~  110 (318)
                      +...+......+++|.|++|.|.|.+++|+.  .....+...+.+|+.+. .+||+||||.|++...++.+++...+.. 
T Consensus        11 ~~~g~~~~~~~p~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~~~~~~~-   89 (390)
T TIGR02718        11 LSQGIPIGLAMDALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSACLASLAL-   89 (390)
T ss_pred             HHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHHHHHHHHc-
Confidence            5556667788899999999999999999997  46778889899999955 7999999999765443333322222210 


Q ss_pred             CCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021040          111 CMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVS  190 (318)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~  190 (318)
                      ..+   . .....+...    ......+..+..++..+++..|..+ +++++...+.+..+..+|.+++....+.+.+  
T Consensus        90 ~~~---~-~~~~~~~~~----~~~~~~~~~a~~d~~~d~~~~~~~~-~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~--  158 (390)
T TIGR02718        90 VGP---D-VAGAGWAVG----LLACASLASATQDIATDGMAAEHFN-GRTLAKGNAVQIAGVMIGFFGGGAGTLVLFG--  158 (390)
T ss_pred             CCc---c-hhhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhCC-HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence            011   1 111111111    1123445566666667777666543 4566777777777767777766554434433  


Q ss_pred             ccCcccchhHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH
Q 021040          191 TAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQ  270 (318)
Q Consensus       191 ~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (318)
                              ..+|+..+++.+++..+..+...+..||++++ + +++++..+++++.+|+|.++......++.........
T Consensus       159 --------~~gw~~~f~~~a~l~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~  228 (390)
T TIGR02718       159 --------KFGQRPAFLLVACVPLASLVCVLWLKDRAVAS-P-EAPLARRASLFRFFRRPLAWSLLALALLSAMTAVSGF  228 (390)
T ss_pred             --------HhCHHHHHHHHHHHHHHHHHHHHHcCCCCcCc-c-ccchhhHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHH
Confidence                    24788888888777666555544443333211 1 1112234557889999998888877788877777788


Q ss_pred             HHhHHhhhhccccccchhhHHHHHH-----HHHHHHHHHHHHHHHHh
Q 021040          271 AYLAFYVINDLRMGQSAKALVPAII-----YICSFIVSILLQVISLK  312 (318)
Q Consensus       271 ~~~~~yl~~~~g~~~~~~~~~~~~~-----~v~~~i~~~~~~~i~~~  312 (318)
                      ++.+.|++| .|.++++.+.+-.+.     .++..+++.+.||+++|
T Consensus       229 ~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~  274 (390)
T TIGR02718       229 GLSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLW  274 (390)
T ss_pred             HHhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            899999988 598887666543322     23344555555555543

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.79  E-value=1.4e-16  Score=148.28  Aligned_cols=235  Identities=9%  Similarity=-0.008  Sum_probs=142.5

Q ss_pred             chhhhhhcccchHHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHH
Q 021040           23 RWSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVA  101 (318)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~  101 (318)
                      +++.....+..+...+...+..++++.++++. |.|+.++|++.++..+..++.+|+.|+++||+||||. +..+.++.+
T Consensus        14 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~-l~~~~~~~~   92 (399)
T PRK05122         14 TLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKA-VVFGLCGCA   92 (399)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcch-HHHHHHHHH
Confidence            33445566666777777888888999988764 9999999999999999999999999999999999998 566766665


Q ss_pred             HHHHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHH
Q 021040          102 VSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYA  181 (318)
Q Consensus       102 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~  181 (318)
                      ++......  ..  +.++. ....+..+.+.+++.+++.+...+...++..|..+ +++|+++.++.+....+|..+++.
T Consensus        93 ~~~~~~~~--~~--~~~~~-~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~  166 (399)
T PRK05122         93 LSGLLYLL--AG--LLAAW-PVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVG-ALHTGRVISWNGIATYGALAIGAP  166 (399)
T ss_pred             HHHHHHHH--hh--hhhcc-chhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcC-hhhhccchhhhhhhhhHHHHHHHH
Confidence            54332211  00  11110 01111222333456777777776666777778764 578999999888877777777666


Q ss_pred             HHHHHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCCCchHHHHHHHHhcHHHHHHHHHHHH
Q 021040          182 IAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYML  261 (318)
Q Consensus       182 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (318)
                      +++.+...          .+|++.+++.++++++..+. ....||+++  +++++    .++++.+|+  ++.......+
T Consensus       167 l~~~l~~~----------~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~----~~~~~~~~~--~~~~~~~~~~  227 (399)
T PRK05122        167 LGVLLYHW----------GGLAGLGLLIMLLALLGLLL-ARPRPAVPP--VKGER----LPFRRVLGR--VWPYGMGLAL  227 (399)
T ss_pred             HHHHHHHc----------ccHHHHHHHHHHHHHHHHHH-HhcCCCCCC--CCccc----hhHHHHHHH--HHHHHHHHHH
Confidence            65544432          45777766555444332222 222222211  11111    123333332  2222223334


Q ss_pred             HHHHHHHHHHHhHHhhhhccccc
Q 021040          262 TRLVVNVSQAYLAFYVINDLRMG  284 (318)
Q Consensus       262 ~~~~~~~~~~~~~~yl~~~~g~~  284 (318)
                      ..+.......+.|.|+++. |.+
T Consensus       228 ~~~~~~~~~~~~~~~~~~~-~~~  249 (399)
T PRK05122        228 ASIGFGTIATFITLYYAAR-GWD  249 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHc-ccc
Confidence            4445556667888887763 543

>PRK15075 citrate-proton symporter; Provisional

Probab=99.79  E-value=1.7e-16  Score=149.66  Aligned_cols=275  Identities=13%  Similarity=0.054  Sum_probs=151.9

Q ss_pred             hhhcccchHHHHHHHHHHHHHHHHHHHhCCChhHHHHH-HHH-----HHHHHHHHhhhhHHHhhhccCchHHHHHHHHHH
Q 021040           27 LYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAV-MLS-----GQIADGFATIFIGELIDRFGHFKIWHGAGSVLV  100 (318)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~gls~~~~g~i-~~~-----~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~  100 (318)
                      ....++.+.............|...+|.+.++.+.+.. .+.     ..+...+++++.|.++||+||||.+ ..+.++.
T Consensus        18 ~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l-~~~~~~~   96 (434)
T PRK15075         18 LRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGL-IVTLSIM   96 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHH-HHHHHHH
Confidence            44445555444445555555555555668777665433 222     2333357789999999999999984 5677777


Q ss_pred             HHHHHHHhCCCCCCcccCccchh--HHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHH
Q 021040          101 AVSFSSVFGGCMPCRILSTSTLK--VETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLS  178 (318)
Q Consensus       101 ~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~  178 (318)
                      .++......       .++....  ......++.+++.+++.+...+....+++|..| +++|++..++.+.+.++|..+
T Consensus        97 ~~~~~l~~~-------~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p-~~~rg~~~~~~~~~~~~g~~~  168 (434)
T PRK15075         97 ASGTLLIAF-------VPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIAT-PGRKGFYTSWQSASQQVAVVF  168 (434)
T ss_pred             HHHHHHHHh-------CCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCC-cccchHHHHHHHHHHHHHHHH
Confidence            666554321       2211100  000112333455677777666666678889886 579999999988888888777


Q ss_pred             HHHHHHHHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCCCchHHHHHHHHhcHHHHHHH-H
Q 021040          179 LYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVA-L  257 (318)
Q Consensus       179 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  257 (318)
                      ++.++..+...+...  .....+||+.+++.+... ..........||+++..+++++.+.++.+++..|+++.+... .
T Consensus       169 g~~~g~~l~~~~~~~--~~~~~gWr~~f~~~~~~~-~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (434)
T PRK15075        169 AALLGYLLNQWLSPA--QMAEWGWRIPFLIGCLIV-PFIFLIRRSLEETEEFLARKHRPSMREIFRSLAANWRIVLAGML  245 (434)
T ss_pred             HHHHHHHHHHhCCHH--HHhccchHHHHHHHHHHH-HHHHHHHHhcCCCHHHHHhhhccccccHHHHHHHhHHHHHHHHH
Confidence            776665544322100  001357888887643322 222222223344322111111112233455556666655443 3


Q ss_pred             HHHHHHHHHHHHHHHhHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 021040          258 VYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQVISLKL  313 (318)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~v~~~i~~~~~~~i~~~~  313 (318)
                      ..++..........|.|.|+++..|++..+.........++++++.++.++++||+
T Consensus       246 ~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~  301 (434)
T PRK15075        246 MVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRI  301 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33444555667888999999998999865444433333344444444444444443

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.78  E-value=8.8e-17  Score=145.19  Aligned_cols=243  Identities=13%  Similarity=0.072  Sum_probs=165.5

Q ss_pred             HHHHHHHH-hCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHH-hCCCCCCcccCccchh
Q 021040           46 YLLLFLTD-IGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSV-FGGCMPCRILSTSTLK  123 (318)
Q Consensus        46 ~l~~~l~~-~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~-~~~~~~~~~~~~~~~~  123 (318)
                      .+.+++++ .|+|+.|.+++.++..+..++...+.|.+.||+|.||.+. .+.++..+-.+.+ +.       .+..+.+
T Consensus        35 ~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~-~s~~l~~IP~~~~~~a-------~~~~~~~  106 (417)
T COG2223          35 PLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTI-LSMLLLLIPCLGLAFA-------VTYPSTW  106 (417)
T ss_pred             HHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHH-HHHHHHHHHHHHHHHH-------ccCCchH
Confidence            34555555 4999999999999999999999999999999999988864 4555544443322 21       0111122


Q ss_pred             HHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchhHHHH
Q 021040          124 VETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYR  203 (318)
Q Consensus       124 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~  203 (318)
                      . +   ++...+.|++-+... ...+.++...| +|+++.+.++.. ..|+|..+...++++++...+       ...|+
T Consensus       107 ~-l---l~~gll~G~~GasFa-v~m~~~s~~fP-~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g-------~~~w~  172 (417)
T COG2223         107 Q-L---LVIGLLLGLAGASFA-VGMPNASFFFP-KEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFG-------FLAWR  172 (417)
T ss_pred             H-H---HHHHHHHhcccceeh-cccccccccCC-hhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHh-------hHHHH
Confidence            2 2   222234554444333 23445566665 578899999988 789999998888766665432       11377


Q ss_pred             HHHHHHHHHHHHHHHHHHhcccccccccccCCCCchH-HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhccc
Q 021040          204 WIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHAR-ISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLR  282 (318)
Q Consensus       204 ~~~~i~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g  282 (318)
                      ....+.....++..+..++..+|.++.++  ..++.+ .+++.++|||+.|.+.+.|+...-++..+..++|.|++++++
T Consensus       173 ~~~~i~~~~l~v~~v~~~~~~~d~p~~r~--~~~~~~~~~~~~v~~~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg  250 (417)
T COG2223         173 NVAGIYVVALAIAAVLAWLGMNDVPEHRA--SVKPQLPAQLKAVFSNKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFG  250 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCChhhhc--cccccchhHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            77777777777777777788877655322  112222 678899999999999999999999999999999999999999


Q ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 021040          283 MGQSAKALVPAIIYICSFIVSILLQVISLK  312 (318)
Q Consensus       283 ~~~~~~~~~~~~~~v~~~i~~~~~~~i~~~  312 (318)
                      .++...+.........+.+.-.+.++++||
T Consensus       251 ~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR  280 (417)
T COG2223         251 LSPVTAGLIAFLFPLIGALARPLGGWLSDR  280 (417)
T ss_pred             CChhhHHHHHHHHHHHHHHHHhccchhhhh
Confidence            998665544443333343444444444444

>PRK09952 shikimate transporter; Provisional

Probab=99.78  E-value=2.5e-16  Score=148.64  Aligned_cols=256  Identities=10%  Similarity=0.011  Sum_probs=148.6

Q ss_pred             HHHH-HHHHHH-h--CCChhHHHHHH-----HHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCC
Q 021040           44 FTYL-LLFLTD-I--GLSPRGAAAVM-----LSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPC  114 (318)
Q Consensus        44 ~~~l-~~~l~~-~--gls~~~~g~i~-----~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~  114 (318)
                      ..++ +.+..+ .  +.++. .+++.     ++..+...+++++.|+++||+||||. +..+.++++++......  .  
T Consensus        41 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~-l~~~~~~~~~~~~~~~~--~--  114 (438)
T PRK09952         41 YGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRM-LMLTVWMMGIATALIGL--L--  114 (438)
T ss_pred             HHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHH-HHHHHHHHHHHHHHHhc--C--
Confidence            3444 344544 3  67766 35443     34556677888999999999999998 56687777777654432  1  


Q ss_pred             cccCccch--hHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 021040          115 RILSTSTL--KVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTA  192 (318)
Q Consensus       115 ~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~  192 (318)
                         ++...  .+....+.+.+.+.|++.+...+....++.|..| +++|++..+..+.+..+|.+++..+...+...+..
T Consensus       115 ---~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p-~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~  190 (438)
T PRK09952        115 ---PSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAP-KNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTD  190 (438)
T ss_pred             ---CcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCC-CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH
Confidence               22110  1111223344556778887776666778888876 57899888888888777777665544333322210


Q ss_pred             CcccchhHHHHHHHHHHHHHHHHHHHHHHhcccccccccc---c-CCCCchHHHHHHHHhcHHHHHHHH-HHHHHHHHHH
Q 021040          193 KTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMG---L-RGNSHARISWAYWFKKILYYQVAL-VYMLTRLVVN  267 (318)
Q Consensus       193 ~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  267 (318)
                      ..  ....+||+.+++.+++.++. +......||+++..+   + +++++.....+.++|+|+.+.... ..++..+..+
T Consensus       191 ~~--~~~~gWr~~f~~~~~~~l~~-~~l~~~~~es~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  267 (438)
T PRK09952        191 EQ--FLSWGWRIPFLFSIVLVLIA-LWVRNGMEESAEFEQQQHEQAAAKKRIPVIEALLRHPGAFLKIIALRLCELLTMY  267 (438)
T ss_pred             HH--hhccChHHHHHHHHHHHHHH-HHHHHhCCCChhHHHHHhhcccccccCCHHHHHHHchHHHHHHHHHHHHHHHHHH
Confidence            00  01257998887766654432 333344566543211   1 111111122345677877665543 4455556667


Q ss_pred             HHHHHhHHhhhhccccccchhhHHHH----HHHHHHHHHHHHHHHHHHh
Q 021040          268 VSQAYLAFYVINDLRMGQSAKALVPA----IIYICSFIVSILLQVISLK  312 (318)
Q Consensus       268 ~~~~~~~~yl~~~~g~~~~~~~~~~~----~~~v~~~i~~~~~~~i~~~  312 (318)
                      ...+|.|.|+++..|++......+..    ...++..+.+.+.||++||
T Consensus       268 ~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr  316 (438)
T PRK09952        268 IVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRR  316 (438)
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch
Confidence            78889999999999988753322222    2234445556666666554

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.78  E-value=2.4e-19  Score=163.08  Aligned_cols=271  Identities=10%  Similarity=0.033  Sum_probs=186.8

Q ss_pred             CCCchhhhhhcccchHHHHHHHHHHHHHHHHHHH-hCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHH
Q 021040           20 PVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTD-IGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSV   98 (318)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~   98 (318)
                      +-+++......+.+..|-.-.+.+....+ =.++ ++++++..|++.+...+...+++|++|+++||+.||+. +..|..
T Consensus        29 ~~~~~~l~il~~vnlmny~Dr~~iagv~~-~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v-~~vG~~  106 (493)
T KOG1330|consen   29 KSPTLTLVILCLVNLMNYADRYTIAGVLK-EVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRV-IAVGIF  106 (493)
T ss_pred             ccchHHHHHHHHHHHHHHhhhhhhhhhhH-HHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceE-EeeHHH
Confidence            33344444455555544444333322111 1122 39999999999999999999999999999999999998 678999


Q ss_pred             HHHHHHHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHH
Q 021040           99 LVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLS  178 (318)
Q Consensus        99 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~  178 (318)
                      ++.++.+..-       +.  ...+ .   +.+.+.+.|+|.+.+.+...++++|++++ ++|+++.++.+...++|..+
T Consensus       107 iW~~Av~~~~-------fs--~~Fw-q---~~l~R~~vGiGeAs~~~ia~s~IaD~f~~-~~Rs~~~~ify~~ipvGsgl  172 (493)
T KOG1330|consen  107 IWTLAVFASG-------FS--NHFW-Q---VLLCRGFVGIGEASYSPIAPSLIADSFPD-DKRSRVLGIFYFAIPVGSGL  172 (493)
T ss_pred             HHHHHHHHHH-------HH--HHHH-H---HHHHHHHhccchhhhcccchhHhhhcCcc-hhhhHHHHHhhhhcccccce
Confidence            9888866432       22  1122 2   23334568899999998899999999864 79999999999999999877


Q ss_pred             HHHHHHHHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhcccccccccccC---------CCCchHHHHHHHHhc
Q 021040          179 LYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLR---------GNSHARISWAYWFKK  249 (318)
Q Consensus       179 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~~~---------~~~~~~~~~~~~~~~  249 (318)
                      |..++.. ++..        ...|||.+.+.++++++++++.+++++|+++++.++         +..+..++.+.+.|+
T Consensus       173 G~vvgs~-va~~--------~~~Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~~~~~~~~~~~~~ts~~kDl~~l~~~  243 (493)
T KOG1330|consen  173 GYVVGSV-VASL--------TFWWRWAFRGSAVLGVIVGLLVFLFVREPERGARDEVDGENKMVKPFTSVWKDLKVLAKI  243 (493)
T ss_pred             eEEeeee-eccC--------ccceEEEEEeehHHHHHHHHHHHhhccCcccccccccccCCcCCCCccchHHHHHHHHcc
Confidence            6655422 2211        234999999999999999999999999987532211         122345666777788


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHhhhhccccc---cchh----hHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021040          250 ILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMG---QSAK----ALVPAIIYICSFIVSILLQVISLKLYS  315 (318)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~---~~~~----~~~~~~~~v~~~i~~~~~~~i~~~~~~  315 (318)
                      |.+....+.+...++....+.-+.|.++.+.+.+.   ....    ++.-....++.+.++++.||++++...
T Consensus       244 ~v~v~~sl~~~a~~fv~Gs~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~  316 (493)
T KOG1330|consen  244 KVFVLSSLGIIAAQFVIGSLSWWAPAFIYYSYELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPN  316 (493)
T ss_pred             CceeeehHHHHHHHHhccccchhhhhHHHHHHHHhCCccccchhhhhHHHhhchhhheehHHHHHHHHHhccc
Confidence            88777777777777776666667777777665443   2211    222334557778888888888885544

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.78  E-value=2.2e-16  Score=142.95  Aligned_cols=233  Identities=18%  Similarity=0.182  Sum_probs=172.4

Q ss_pred             ccchHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCC
Q 021040           31 SGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGG  110 (318)
Q Consensus        31 ~~~~~~~~~~~~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~  110 (318)
                      +..+..........+..+.+.++.|.++.+.+++.+...+...+.+|+.|.++||+||||. +..+.+...++...... 
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~-~~~~~~~~~~~~~~~~~-   83 (352)
T cd06174           6 LGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRV-LLLGLLLFALGSLLLAF-   83 (352)
T ss_pred             HHHHHHHHhhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchh-hHHHHHHHHHHHHHHHH-
Confidence            3445556666677788888888889999999999999999999999999999999999997 66787777777654431 


Q ss_pred             CCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021040          111 CMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVS  190 (318)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~  190 (318)
                            .+  +.....    +.+.+.+++.+...++..++..|..+ +|+|++..+..+....+|..+++.+++.+..  
T Consensus        84 ------~~--~~~~~~----~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--  148 (352)
T cd06174          84 ------AS--SLWLLL----VGRFLLGLGGGALYPAAAALIAEWFP-PKERGRALGLFSAGFGLGALLGPLLGGLLAE--  148 (352)
T ss_pred             ------hc--cHHHHH----HHHHHHHcccccccHhHHHHHHHhCC-ccchhhhhhHHHHHHHHHHHHHHHHHHHHHH--
Confidence                  11  122222    22345677777777888889999886 4799999999999999998888777655543  


Q ss_pred             ccCcccchhHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH
Q 021040          191 TAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQ  270 (318)
Q Consensus       191 ~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (318)
                              ..+|++.+.+.+++.++..+...+. +                        |.++......++.........
T Consensus       149 --------~~~~~~~~~~~~~~~~~~~~~~~~~-~------------------------~~~~~~~~~~~~~~~~~~~~~  195 (352)
T cd06174         149 --------SLGWRWLFLILAILGLLLALLLLFL-L------------------------RLLLLLALAFFLLSFGYYGLL  195 (352)
T ss_pred             --------HhhHHHHHHHHHHHHHHHHHHHHHH-H------------------------HHHHHHHHHHHHHHhHHHHHH
Confidence                    2458888877766666555444322 2                        667777777888888888899


Q ss_pred             HHhHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 021040          271 AYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQVISLKL  313 (318)
Q Consensus       271 ~~~~~yl~~~~g~~~~~~~~~~~~~~v~~~i~~~~~~~i~~~~  313 (318)
                      .+.|.+.++..|.++.+.+.......++..++..+.+++.||.
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  238 (352)
T cd06174         196 TYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRL  238 (352)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999998888877666666666666666666666555554

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK12382 putative transporter; Provisional

Probab=99.78  E-value=6.7e-16  Score=143.41  Aligned_cols=257  Identities=10%  Similarity=0.065  Sum_probs=145.5

Q ss_pred             hhhcccchHHHHHHHHHHHHHHHHHHH-hCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHH
Q 021040           27 LYYGSGHMLNDITAACWFTYLLLFLTD-IGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFS  105 (318)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~l~~~l~~-~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~  105 (318)
                      ....++.+...+...+..+.+|.++.+ +|+|.+++|++.+++.+...+.+|+.|+++||+||||+ +..+.+...++..
T Consensus        18 ~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~-l~~~~~~~~~~~~   96 (392)
T PRK12382         18 FRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRS-ALQGMLACGLAGL   96 (392)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHH-HHHHHHHHHHHHH
Confidence            334445566666677777888888765 59999999999999999999999999999999999998 4566665555432


Q ss_pred             HHhC-CCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHH
Q 021040          106 SVFG-GCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAF  184 (318)
Q Consensus       106 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~  184 (318)
                      .... ...+..  ...+..    ...+.+.+.+++.+...+...+++.|..+ +|+|+++.++.+.+...|..+++.+++
T Consensus        97 ~~~~~~~~~~~--~~~~~~----~l~~~r~l~G~~~~~~~~~~~~~~~~~~~-~~~r~~a~~~~~~~~~~g~~~g~~~~~  169 (392)
T PRK12382         97 AYLLAAILPVS--APFKFA----LLVVGRLILGFGESQLLTGALTWGLGLVG-PKHSGKVMSWNGMAMYGALAAGAPLGL  169 (392)
T ss_pred             HHHhhhccccc--hhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhCC-ccccchhhhHHHHHHHHHHHHHHHHHH
Confidence            1110 001100  001112    12233345677777666666677778775 588999999888877777776665544


Q ss_pred             HHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCCCchHHHHHHHHhcHHHHHHHHHHHHHHH
Q 021040          185 IVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRL  264 (318)
Q Consensus       185 ~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (318)
                      .+..          ..+|++.+.+..+..++.. ......||.+++  ++++.+.++..+..      +.......+...
T Consensus       170 ~l~~----------~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~------~~~~~~~~l~~~  230 (392)
T PRK12382        170 LLHS----------HFGFAALALTTMVLPLLAW-AFNGTVRKVPAH--AGERPSLWSVVGLI------WKPGLGLALQGV  230 (392)
T ss_pred             HHHh----------ccChHHHHHHHHHHHHHHH-HHHHhccCCCCC--cccCchHHHHHHHH------HHhHHHHHHHHH
Confidence            4332          2357766554433332222 222233332211  11112222222222      211122223334


Q ss_pred             HHHHHHHHhHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 021040          265 VVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQVISLKL  313 (318)
Q Consensus       265 ~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~v~~~i~~~~~~~i~~~~  313 (318)
                      .......+.|.|+++. |.+.....  .....++.+++.++.+++.||.
T Consensus       231 ~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~g~l~~r~  276 (392)
T PRK12382        231 GFAVIGTFVSLYFASK-GWAMAGFT--LTAFGGAFVLMRVLFGWMPDRF  276 (392)
T ss_pred             HHhHHHHHHHHHHHhc-CCchhHHH--HHHHHHHHHHHHHHHHHHHHhc
Confidence            4445667778888763 54432221  1222344455555566666654

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.77  E-value=1.5e-16  Score=166.71  Aligned_cols=275  Identities=13%  Similarity=-0.028  Sum_probs=173.6

Q ss_pred             hhhcccchHHHHHHHHHHHHHHHHHHH-hCCC--hhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHH
Q 021040           27 LYYGSGHMLNDITAACWFTYLLLFLTD-IGLS--PRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVS  103 (318)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~l~~~l~~-~gls--~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~  103 (318)
                      ..+.+..+...+........+..++.+ .+.+  ....+++.+++.+...+++|+.|.++||+||||.+ .++.++.++.
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l-~~~~~~~~~~   90 (1146)
T PRK08633         12 LPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVI-RIVKLFEVGL   90 (1146)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHH-HHHHHHHHHH
Confidence            333344444444433333334444433 4443  45678999999999999999999999999999984 4555443333


Q ss_pred             HHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHH
Q 021040          104 FSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIA  183 (318)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~  183 (318)
                      ..+...   . ...  .+.+.+    .+..++.+++.+...++..++++|.++ +++|+++.++.+.+..+|.++++.++
T Consensus        91 ~~~~~~---~-~~~--~~~~~l----~~~r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~ig~~lg~~l~  159 (1146)
T PRK08633         91 TLLIVL---A-YYL--GWFWLA----FAVTFLLGAQSAIYSPAKYGIIPELVG-KENLSRANGLLEAFTIVAILAGTALF  159 (1146)
T ss_pred             HHHHHH---H-HHH--ccHHHH----HHHHHHHHHHHHhhchHHHhhhHHhcC-cccchhhhhHHHHHHHHHHHHHHHHH
Confidence            222210   0 001  112222    223345677778777788889999986 47899999999999999999888887


Q ss_pred             HHHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhccccccccccc---CC----CCchHHHHHHHHhcHHHHHHH
Q 021040          184 FIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGL---RG----NSHARISWAYWFKKILYYQVA  256 (318)
Q Consensus       184 ~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~~---~~----~~~~~~~~~~~~~~~~~~~~~  256 (318)
                      +.+.......+ .+....+.|.+.+.++...++.++..+..||.+..+..   ++    ....++.++.++++|.++..+
T Consensus       160 ~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  238 (1146)
T PRK08633        160 SFLFESVNGNT-PSEILGRIAPAGLVLLAVAVLGLIFAYRLPKVPAAAPEVFDKKKYLFPKLLWRNLKLLRSDRVLWLAI  238 (1146)
T ss_pred             HHHHHhhcccc-ccccccchHHHHHHHHHHHHHHHHHHhcCcCCCCCCcccccccccccHHHHHHHHHHHhcCcHHHHHH
Confidence            66654311000 00001233443333333333333444455665432211   11    112345677888999988887


Q ss_pred             HHHHHHHHHHHHHHHHhHHhhhhccccccc-hhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021040          257 LVYMLTRLVVNVSQAYLAFYVINDLRMGQS-AKALVPAIIYICSFIVSILLQVISLKLY  314 (318)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~-~~~~~~~~~~v~~~i~~~~~~~i~~~~~  314 (318)
                      +..++.+........++|.|+.+.+|.+.. ..+.+.....+++++++++.+++++|.-
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~  297 (1146)
T PRK08633        239 IGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHI  297 (1146)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCce
Confidence            777777777777888999999999999887 6777766777888889999999988853

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.76  E-value=1.4e-17  Score=163.38  Aligned_cols=264  Identities=11%  Similarity=0.060  Sum_probs=175.6

Q ss_pred             HHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCccc-------
Q 021040           45 TYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRIL-------  117 (318)
Q Consensus        45 ~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~-------  117 (318)
                      ..++..-++++++.++.|++.+.+.+..++..++.|+++||+||||. +.+|.++++++.++..   +|..+.       
T Consensus        54 ~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~-i~~g~ll~~lg~ll~a---lphf~~~~y~~~~  129 (633)
T TIGR00805        54 SSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIV-IGIGCAIMGLGSFLLS---LPHFLSGRYSYST  129 (633)
T ss_pred             hhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceE-EEecHHHHHHHHHHHh---ChHHhcCCccccc
Confidence            33444444569999999999999999999999999999999999887 6788888888866543   231000       


Q ss_pred             ------------------C----------------ccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhH
Q 021040          118 ------------------S----------------TSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVV  163 (318)
Q Consensus       118 ------------------~----------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~  163 (318)
                                        .                ..+....+..+++.+++.|+|.+...+...+++.|..+ +++|+.
T Consensus       130 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~-~~~~~~  208 (633)
T TIGR00805       130 TVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAK-SKNSPL  208 (633)
T ss_pred             cccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCC-ccccHH
Confidence                              0                00000011223344466788888777777788888875 578999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhccC----------cccchh--HHHHHHHHHHHHHHHHHHHHHHhccccccccc
Q 021040          164 LTSCRNAFTMVANLSLYAIAFIVFSVSTAK----------THADLE--NQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKM  231 (318)
Q Consensus       164 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~----------~~~~~~--~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~  231 (318)
                      ..++.+.+..+|.+++..+++.+...+.+.          ++.|..  ..|+..|++.++++++.+++.+++.++.++++
T Consensus       209 ~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~~p~~lp~~~  288 (633)
T TIGR00805       209 YIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFFFPKALPKEG  288 (633)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCcc
Confidence            999999999999988888877766533211          011111  13666677777777776655444433322110


Q ss_pred             --c-----cC------CC----------CchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhccccccchh
Q 021040          232 --G-----LR------GN----------SHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAK  288 (318)
Q Consensus       232 --~-----~~------~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~  288 (318)
                        +     ++      ++          ++..+.+++++|||.++...+..++.......+.+|+|.|+++++|+++...
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~n~~f~~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~a  368 (633)
T TIGR00805       289 KRVNVDVHETEKLEKSEDKSRKKNSDITKDFPKIIKRLLCNPIYMLVILAQVIDSLAFNGYITFLPKYLENQYGISSAEA  368 (633)
T ss_pred             cccchhhhhhhcccccccccchhhhhhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH
Confidence              0     00      00          0122457789999999999999999999999999999999999999998766


Q ss_pred             hHHHHHHHH-HHHHHHHHHHHHHHhh
Q 021040          289 ALVPAIIYI-CSFIVSILLQVISLKL  313 (318)
Q Consensus       289 ~~~~~~~~v-~~~i~~~~~~~i~~~~  313 (318)
                      +.+.....+ +++++.++.+++.||+
T Consensus       369 g~l~~~~~i~~~~vG~~l~G~l~~r~  394 (633)
T TIGR00805       369 NFLIGVVNLPAAGLGYLIGGFIMKKF  394 (633)
T ss_pred             HHHhhhhhhhHHHHHHhhhhheeeee
Confidence            554433222 3445555555555544

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.75  E-value=1.2e-15  Score=146.06  Aligned_cols=178  Identities=14%  Similarity=0.048  Sum_probs=117.9

Q ss_pred             hhhhhhcccchHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHH
Q 021040           24 WSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVS  103 (318)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~  103 (318)
                      +......++.+...+......+.++.+.++.|+|+.+.+++.+...+...+++++.|.++||+||||. +..+.+..+++
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~-~~~~~~~~~~~   98 (496)
T PRK03893         20 KAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLA-MVISIVLFSVG   98 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH-HHHHHHHHHHH
Confidence            33345555555555555555555666556679999999999999999999999999999999999987 55677776666


Q ss_pred             HHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHH
Q 021040          104 FSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIA  183 (318)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~  183 (318)
                      ......       .+  +.+..    .+..++.+++.+.......+++.|..+ +++|++..+....+..+|..+++.+.
T Consensus        99 ~~~~~~-------~~--~~~~l----~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~  164 (496)
T PRK03893         99 TLACGF-------AP--GYWTL----FIARLVIGMGMAGEYGSSATYVIESWP-KHLRNKASGFLISGFSIGAVVAAQVY  164 (496)
T ss_pred             HHHHHH-------Hh--HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            554321       11  12222    222345666666666666777888875 57899999988888888877766655


Q ss_pred             HHHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 021040          184 FIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEP  227 (318)
Q Consensus       184 ~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~  227 (318)
                      +.+..          ..+|++.+++.+. ..+..++.....||+
T Consensus       165 ~~l~~----------~~~w~~~f~~~~~-~~~~~~~~~~~~p~~  197 (496)
T PRK03893        165 SLVVP----------VWGWRALFFIGIL-PIIFALWLRKNLPEA  197 (496)
T ss_pred             HHHhc----------cCCHHHHHHHHHH-HHHHHHHHHHhCCCc
Confidence            44332          2468888765433 233333333445654

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.75  E-value=6.4e-16  Score=146.61  Aligned_cols=243  Identities=12%  Similarity=-0.043  Sum_probs=154.7

Q ss_pred             HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccchh
Q 021040           44 FTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLK  123 (318)
Q Consensus        44 ~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~  123 (318)
                      ..+++.+..+.|.+.++.+++.+...+...++.|+.|+++||+|||+. +..+.++.+++.....       +.+  +.+
T Consensus        39 ~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~-l~~~~~~~~~~~~~~~-------~~~--~~~  108 (455)
T TIGR00892        39 TVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPV-VIAGGLLASLGMILAS-------FSS--NVI  108 (455)
T ss_pred             hhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHH-HHhhHHHHHHHHHHHH-------Hhh--hHH
Confidence            344555556679999999999999999999999999999999999997 5567666666544331       111  122


Q ss_pred             HHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchhHHHH
Q 021040          124 VETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYR  203 (318)
Q Consensus       124 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~  203 (318)
                      ......   +++.+++.+....+..+++.+..  +++|+++.++.+.+..+|..+++.+.+.+..          ..+||
T Consensus       109 ~l~~~~---~~l~G~~~~~~~~~~~~~~~~~~--~~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~----------~~gwr  173 (455)
T TIGR00892       109 ELYLTA---GFITGLGLAFNFQPSLTMLGKYF--YRRRPLANGLAMAGSPVFLSTLAPLNQYLFE----------SFGWR  173 (455)
T ss_pred             HHHHHH---HHHHHhcchhhhhHHHHHHHHHH--HhhHHHHHHHHHhcccHHHHHHHHHHHHHHH----------HhChH
Confidence            211111   13345565554445556666665  3689999999988888887766555444332          35799


Q ss_pred             HHHHHHHHHHHHHHHHHHhccccccc----ccc--c----C---CC---CchHH---HH--HHHHhcHHHHHHHHHHHHH
Q 021040          204 WIAYSSIFIGCCFVGIFLSRTEEPRL----KMG--L----R---GN---SHARI---SW--AYWFKKILYYQVALVYMLT  262 (318)
Q Consensus       204 ~~~~i~~~~~~l~~~~~~~~~~e~~~----~~~--~----~---~~---~~~~~---~~--~~~~~~~~~~~~~~~~~~~  262 (318)
                      +.+++.+++.+++.+..++..++++.    +++  +    +   ++   .+..+   ..  .+++|+|+++..+...++.
T Consensus       174 ~~f~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  253 (455)
T TIGR00892       174 GSFLILGGLLLHCCVCGALMRPVGPSQRVSKSKSKEGLPPDGSTKKLSKKSTAEKINRFLDFSLFTHRGFLVYLSGNVIM  253 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCcccccccccccccCCCCCccccccccchhhhhhhhcchHHhcCchHHHHHHHHHHH
Confidence            99988887766554444333332211    000  0    0   00   00011   11  2578899999888877777


Q ss_pred             HHHHHHHHHHhHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 021040          263 RLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQVISLK  312 (318)
Q Consensus       263 ~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~v~~~i~~~~~~~i~~~  312 (318)
                      .++.....+++|.|+++ .|.+....+.+-.+..++.+++.++.++++||
T Consensus       254 ~~~~~~~~~~l~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~  302 (455)
T TIGR00892       254 FLGFFAPIIFLVPYAKD-KGVDEYEAAFLLSIIGFVDIFARPSCGLIAGL  302 (455)
T ss_pred             HHHccchHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            77777778899999876 58887666555555556666665555555543

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.75  E-value=4.9e-16  Score=162.82  Aligned_cols=231  Identities=11%  Similarity=-0.065  Sum_probs=162.3

Q ss_pred             hhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHH--HHHHHHHHHHHHHhCCCCCCcccCccchhHHHHHHHHHHHH
Q 021040           58 PRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHG--AGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAI  135 (318)
Q Consensus        58 ~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~--~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  135 (318)
                      ....+++.+++.+..++.+|+.|.++||+||||.+..  .+.+...+.....+       ..  .+.+.+    .+..++
T Consensus        51 ~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~-------~~--~s~~~l----~~~~~l  117 (1140)
T PRK06814         51 NALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGF-------HL--NSVPLL----FAALFL  117 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHH-------HH--hhHHHH----HHHHHH
Confidence            3568888999999999999999999999999987322  12122111111111       01  122322    223356


Q ss_pred             HHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchhHHHHHHHHHHHHHHHH
Q 021040          136 FNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCC  215 (318)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l  215 (318)
                      .+++.+...+...++++++.+ +++|++++++.+.+..+|.++++.+++.+...          .+|++.++..+ +..+
T Consensus       118 ~gi~~a~~~p~~~a~l~~~~~-~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~----------~~~~~~~~~~~-~~~~  185 (1140)
T PRK06814        118 MGIHSALFGPIKYSILPDHLN-KDELLGANALVEAGTFIAILLGTIIGGLATIS----------GNFVILVALLM-GIAV  185 (1140)
T ss_pred             HHHHHHhhchHHHHhhHhhcC-ccccchhhHHHHHHHHHHHHHHHHHHHHHHhc----------cccHHHHHHHH-HHHH
Confidence            778888888888899999986 57899999999999999999988887766642          45777763333 3333


Q ss_pred             HHHHHHhccccccccccc-CCC----CchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhccccccchhhH
Q 021040          216 FVGIFLSRTEEPRLKMGL-RGN----SHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKAL  290 (318)
Q Consensus       216 ~~~~~~~~~~e~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~  290 (318)
                      .+++..+.++|++.+++. +.+    ....+.++.+.++|.++...+..++.++......+++|.|+++.+|.+....+.
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~  265 (1140)
T PRK06814        186 LGWLASLFIPKTGNAAPDLKIDRNIIRSTITLLKYAKADKRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATL  265 (1140)
T ss_pred             HHHHHHhhCCCCCCCCCCCeeccchHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHH
Confidence            344444556665332211 111    123456788999999999988888888888888899999999999998877777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhh
Q 021040          291 VPAIIYICSFIVSILLQVISLKL  313 (318)
Q Consensus       291 ~~~~~~v~~~i~~~~~~~i~~~~  313 (318)
                      +.....++.++++++.++++++.
T Consensus       266 ~~~~~~~g~~ig~~~~g~l~~~~  288 (1140)
T PRK06814        266 FLAVFSVGVAVGSFLASKLSEGR  288 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCc
Confidence            77777788889999999988654

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.74  E-value=1.5e-15  Score=145.46  Aligned_cols=264  Identities=17%  Similarity=0.088  Sum_probs=181.3

Q ss_pred             ccchHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCC
Q 021040           31 SGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGG  110 (318)
Q Consensus        31 ~~~~~~~~~~~~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~  110 (318)
                      ++.+..++...+...-++-++.+..-|+.++|++..+..+-..+.+|+.|.++||+.|||. ++.+-+..++....+.. 
T Consensus        17 ~a~~iS~lG~~~~~va~~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrri-li~~~~~~~~~~~~L~~-   94 (524)
T PF05977_consen   17 IAQLISNLGDWMQTVALAWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRI-LILSQLLRALVALLLAV-   94 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHH-HHHHHHHHHHHHHHHHH-
Confidence            4444444544444444566666767789999999999999999999999999999999998 45555544433222210 


Q ss_pred             CCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021040          111 CMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVS  190 (318)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~  190 (318)
                        . ...+..+.+. +   .+..++.+.+.+...+...+.++++.+ +++-.+++++.+...+++.++|+.+++.++..+
T Consensus        95 --l-~~~~~~~~~~-L---l~~~fl~g~~~a~~~PA~~A~ip~lV~-~~~L~~A~al~s~~~niar~iGPalgG~Lva~~  166 (524)
T PF05977_consen   95 --L-AFFGLLSPWL-L---LILTFLLGIGSAFFNPAWQAIIPELVP-KEDLPAANALNSISFNIARIIGPALGGILVAFF  166 (524)
T ss_pred             --H-HHhCcCCHHH-H---HHHHHHHHHHHHHHHHHHHHHHHHhcc-HhhHHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence              0 0011122221 1   222346778888888899999999986 467788999999999999999999988887653


Q ss_pred             ccCcccchhHHHHHHHHHHHHHHHHHHHHHHhccccccccccc-C--CCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHH
Q 021040          191 TAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGL-R--GNSHARISWAYWFKKILYYQVALVYMLTRLVVN  267 (318)
Q Consensus       191 ~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (318)
                                +..+.+.+.++..+ ..+......|++.++++. +  -.+..++.++.+.++|..+..+...++..+...
T Consensus       167 ----------G~~~~f~inalsfl-~~i~~l~~~~~~~~~~~~~~e~~~~~l~~G~ryv~~~~~l~~~l~~~~~~~l~~~  235 (524)
T PF05977_consen  167 ----------GAAAAFLINALSFL-ISILALLRWKPPPPPSSLPRERFFSALREGLRYVRSSPPLRSVLLRSFLFNLFAS  235 (524)
T ss_pred             ----------HHHHHHHHHHHHHH-HHHHHHHHccccccccccchhhhhhhHHHHHHHHhcchHHHHHHHHHHHHHHhhh
Confidence                      34556655543333 333333444433222111 1  123456777888888887777665666666555


Q ss_pred             HHHHHhHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021040          268 VSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQVISLKLYS  315 (318)
Q Consensus       268 ~~~~~~~~yl~~~~g~~~~~~~~~~~~~~v~~~i~~~~~~~i~~~~~~  315 (318)
                      .....+|.+..+.+|.++...+.+.....+++++++++.+|+.+++-.
T Consensus       236 a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~  283 (524)
T PF05977_consen  236 AVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSS  283 (524)
T ss_pred             HHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCc
Confidence            666778999999999999888988888899999999999999987643

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.74  E-value=1.3e-16  Score=144.31  Aligned_cols=285  Identities=12%  Similarity=0.068  Sum_probs=206.2

Q ss_pred             CCCCchhhhhhcccchHHHHHHHHHH-HHHHHHHHHh-C---CC----hhHHHHHHHHHHHHHHHHhhhhHHHhhhccCc
Q 021040           19 QPVGRWSVLYYGSGHMLNDITAACWF-TYLLLFLTDI-G---LS----PRGAAAVMLSGQIADGFATIFIGELIDRFGHF   89 (318)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~~-g---ls----~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr   89 (318)
                      ++...+....|.+-+.+++....++. .++|+|+++. +   .+    .+..|...+++.+..++..|+.|.++|+.|+|
T Consensus         9 ~~~~~~~~~sWilyD~~~~p~~~ivtt~ifply~~~~~~~~g~~~~~~~a~~gy~~aia~llia~LapiLG~iaD~~g~R   88 (438)
T COG2270           9 MPKLRKGIKSWILYDWGSSPFFAIVTTFIFPLYFTSVAGAGGVDPASSTAYWGYASAIAGLLIALLAPILGTIADYPGPR   88 (438)
T ss_pred             cccccccceeEEEeeccCCceeeeeeeehhHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccCCCc
Confidence            33445556778888877776655544 5789999984 2   23    36788899999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHH
Q 021040           90 KIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRN  169 (318)
Q Consensus        90 ~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~  169 (318)
                      |+++.....+..++...+|+  +|     +.+.++..+.+   .++..+++...++.++++.+++++ +++-++.++...
T Consensus        89 k~~~~~f~~i~i~~~~~L~~--i~-----~~s~~~~~l~~---~il~~i~~~~s~Vfyds~L~~~~~-k~~~~riS~lg~  157 (438)
T COG2270          89 KKFFGFFTAIGIISTFLLWF--IP-----PGSYLLLLLLF---LILASIGFEFSNVFYDSMLPRLTT-KDNMGRISGLGW  157 (438)
T ss_pred             chHHHHHHHHHHHHHHHHHH--hC-----CCchHHHHHHH---HHHHHHhcchhheehhhHhhhhcC-ccccCccccccc
Confidence            99887777777777776664  33     21233332222   245667888889999999999875 345566666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhc---------cCcccchhHHHHHHHHHHHHHHHHHHHHHHhccccccccc-cc-----C
Q 021040          170 AFTMVANLSLYAIAFIVFSVST---------AKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKM-GL-----R  234 (318)
Q Consensus       170 ~~~~~g~~~~~~~~~~l~~~~~---------~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~-~~-----~  234 (318)
                      ...++|+.+..++........+         +.+++| ...-|..+.+.++...+..+..+..+||.++.. ++     +
T Consensus       158 ~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~ri~~~l~A~W~li~~iPm~~~v~~~~~~~~~~~~~l~~  236 (438)
T COG2270         158 ALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPAD-GEDVRITGLLAALWWLLFALPMILNVHDAEKISSPPPTALRN  236 (438)
T ss_pred             ccccccchHHHHHHHHHHhcccccceeEEeeccCccc-cccchhHHHHHHHHHHHHHhHHHhcccccccccccchHHHHH
Confidence            6667776654443311111100         011122 245677778888888888888888888865332 11     1


Q ss_pred             CCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021040          235 GNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQVISLKLY  314 (318)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~v~~~i~~~~~~~i~~~~~  314 (318)
                      .-++.++++|++.+++++...++++++.+-+.+...+.-..|..+.+|++..++..+.....+.+++++++.+++.+|+-
T Consensus       237 g~k~L~~t~k~i~~~~~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg  316 (438)
T COG2270         237 GFKELKSTFKEIRGRKNLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFG  316 (438)
T ss_pred             HHHHHHHHHHHHhcccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            12345577888889999999999999999999999999999999999999999999999999999999999999999875


Q ss_pred             h
Q 021040          315 S  315 (318)
Q Consensus       315 ~  315 (318)
                      +
T Consensus       317 ~  317 (438)
T COG2270         317 S  317 (438)
T ss_pred             C
Confidence            4

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.74  E-value=1.9e-15  Score=144.37  Aligned_cols=178  Identities=10%  Similarity=-0.069  Sum_probs=126.6

Q ss_pred             hhhhhhcccchHHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhh-ccCchHHHHHHHHHHH
Q 021040           24 WSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDR-FGHFKIWHGAGSVLVA  101 (318)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr-~Grr~~~l~~g~~~~~  101 (318)
                      +..+...+..+.....++...++++.|+++. |++.++.+++...+.....+..++.|+++|| +||||. +.+|.++++
T Consensus        14 ~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~-~~~g~~~~~   92 (489)
T PRK10207         14 RPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRT-IVLGAIVLA   92 (489)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHH-HHHHHHHHH
Confidence            3344444556777788888999999999875 9999999999999999999999999999999 999999 567888888


Q ss_pred             HHHHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCcc-chhHHHHHHHHHHHHHHHHHH
Q 021040          102 VSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNST-SRVVLTSCRNAFTMVANLSLY  180 (318)
Q Consensus       102 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~R~~~~~~~~~~~~~g~~~~~  180 (318)
                      ++...++.       ..+ .....++.    ..+.++|.+...+...+++.|..++++ +|++..++.+.+.++|..+++
T Consensus        93 ~g~~~~~~-------~~~-~~~ll~~~----~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~  160 (489)
T PRK10207         93 IGYFMTGM-------SLL-KPDLIFIA----LGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISL  160 (489)
T ss_pred             HHHHHHHH-------hcc-chhHHHHH----HHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHH
Confidence            88665542       111 11111111    234567777777777788999886544 457788889999999998887


Q ss_pred             HHHHHHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhccc
Q 021040          181 AIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTE  225 (318)
Q Consensus       181 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~  225 (318)
                      .+++.+...          .+|+|.|++.++ +.+..++.+...+
T Consensus       161 ~l~g~l~~~----------~gw~~~F~i~~i-~~~~~~~~~~~~~  194 (489)
T PRK10207        161 SLAPVIADK----------FGYSVTYNLCGA-GLIIALLVYFACR  194 (489)
T ss_pred             HHHHHHHHh----------hChHHHHHHHHH-HHHHHHHHHHHcc
Confidence            776555432          468988877543 3444443333333

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.72  E-value=6.8e-16  Score=145.76  Aligned_cols=153  Identities=15%  Similarity=-0.014  Sum_probs=103.3

Q ss_pred             CChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccchhHHHHHHHHHHHH
Q 021040           56 LSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAI  135 (318)
Q Consensus        56 ls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  135 (318)
                      .+..+.|++.+++.+...+++|+.|+++||+||||. +..+.++.+++..+...  .+    ...+.+..    ++.+++
T Consensus        68 ~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~-~~~~~~~~~~~~~~~~~--~~----~~~~~~~~----~~~r~l  136 (481)
T TIGR00879        68 YSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKS-LLIIALLFVIGAILMGL--AA----FALSVEML----IVGRVL  136 (481)
T ss_pred             CChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHH-HHHHHHHHHHHHHHHHH--hc----cccchHHH----HHHHHH
Confidence            448999999999999999999999999999999988 45677777666554421  11    11111112    222345


Q ss_pred             HHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchhHHHHHHHHHHHHHHHH
Q 021040          136 FNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCC  215 (318)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l  215 (318)
                      .+++.+...+...+++.|..+ +++|+++.++.+.+..+|..+++.++ .......      ...+||+.+++.++..++
T Consensus       137 ~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~------~~~~w~~~f~~~~~~~~~  208 (481)
T TIGR00879       137 LGIGVGIASALVPMYLSEIAP-KALRGALTSLYQLAITFGILVAYGFG-SGKVSLN------NTLGWRIPLGLQLIPAGL  208 (481)
T ss_pred             HHhhhhHHHhHHHHHHHccCC-hhhhhhhhhHHHHHHHHHHHHHHHHH-HHhhcCC------CCccHHHHHHHHHHHHHH
Confidence            777777777777888899876 57899999998888888887766554 0001111      135799998775544443


Q ss_pred             HHHHHHhcccccc
Q 021040          216 FVGIFLSRTEEPR  228 (318)
Q Consensus       216 ~~~~~~~~~~e~~  228 (318)
                       .++..+++||++
T Consensus       209 -~~~~~~~l~~~~  220 (481)
T TIGR00879       209 -LFLGLFFLPESP  220 (481)
T ss_pred             -HHHHHhcCCCCh
Confidence             344445667753

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.72  E-value=4.8e-15  Score=141.16  Aligned_cols=166  Identities=14%  Similarity=0.067  Sum_probs=110.5

Q ss_pred             CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCC--CCCcccCccchhHHHHHHHHH
Q 021040           55 GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGC--MPCRILSTSTLKVETISYCVF  132 (318)
Q Consensus        55 gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  132 (318)
                      |.++.+.|++.+++.+..++++++.|+++||+||||++ ..+.++.+++......+.  ......++   ......+.+.
T Consensus        51 ~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~-~~~~~l~~i~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~  126 (479)
T PRK10077         51 SAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSL-KIAAVLFFISALGSAWPEFGFTSIGPDN---TGYVPEFVIY  126 (479)
T ss_pred             cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH-HHHHHHHHHHHHHHHhhccccccccccc---hhHHHHHHHH
Confidence            78899999999999999999999999999999999995 567666666654332100  00000011   1112223344


Q ss_pred             HHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchhHHHHHHHHHHHHH
Q 021040          133 AAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFI  212 (318)
Q Consensus       133 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~  212 (318)
                      +++.|++.+...+...++++|.++ +++|+++.+..+.+..+|.++++.++..+......  ......+|||.+++.++.
T Consensus       127 R~l~G~~~g~~~~~~~~~i~e~~~-~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~--~~~~~~gWr~~f~~~~~~  203 (479)
T PRK10077        127 RIIGGIGVGLASMLSPMYIAEIAP-AHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDA--SWLNTDGWRYMFASEAIP  203 (479)
T ss_pred             HHHHhhhHhHHhhHHHHHHHhhCC-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcc--cccccCChHHHHHHHHHH
Confidence            456788888888888889999986 47899999998888888877765544333211000  000125799998877766


Q ss_pred             HHHHHHHHHhcccccc
Q 021040          213 GCCFVGIFLSRTEEPR  228 (318)
Q Consensus       213 ~~l~~~~~~~~~~e~~  228 (318)
                      .++..+ ..+++||++
T Consensus       204 ~~~~~~-~~~~l~~s~  218 (479)
T PRK10077        204 ALLFLM-LLYFVPETP  218 (479)
T ss_pred             HHHHHH-HHHcCCCCc
Confidence            666544 356678865

>KOG4830 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.71  E-value=1e-18  Score=147.16  Aligned_cols=241  Identities=45%  Similarity=0.806  Sum_probs=172.6

Q ss_pred             CCCCCCCCCchhhhhhcccchHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhh---------
Q 021040           14 DDSFTQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELID---------   84 (318)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsD---------   84 (318)
                      -||..++.++++.+.||.|++.|++..+.+.+|+..|++++|+++....+++.++.+.+++..|+.|..+|         
T Consensus         7 eDPstkPigr~svf~yGvGHmlNDitAScWFTYlllfltqiglsp~~~AmlML~GQVtda~st~ftGi~~d~nll~~~id   86 (412)
T KOG4830|consen    7 EDPSTKPIGRTSVFAYGVGHMLNDITASCWFTYLLLFLTQIGLSPSSRAMLMLIGQVTDAISTPFTGIFSDSNLLPACID   86 (412)
T ss_pred             CCCCCCcccceeeeeechhHHHhhHHHHHHHHHHHHHHHHhcCCcchhHHHHHhhHHHHHHhcccccccccccccHHHhh
Confidence            45788899999999999999999999999999999999999999999999999999999999999997776         


Q ss_pred             hccCchHHHHHHHHHHHHHHHHHhC--CCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchh
Q 021040           85 RFGHFKIWHGAGSVLVAVSFSSVFG--GCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRV  162 (318)
Q Consensus        85 r~Grr~~~l~~g~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~  162 (318)
                      |+|||+.|..+|.++..+++...|.  .+..|...  .+.+.....|.+...++|++++.                    
T Consensus        87 r~G~~~~wh~~gt~lVslSf~~ifg~a~iF~~~~~--~s~vanlglyaialvVFgv~~A~--------------------  144 (412)
T KOG4830|consen   87 RIGRRMSWHLIGTVLVSLSFPMIFGFAKIFLCKST--TSEVANLGLYAIALVVFGVGWAS--------------------  144 (412)
T ss_pred             hhcceeeeeecccEEEEEechhhcCceeEEeeccH--HHHHHHhHHHHHHhheeeeeeec--------------------
Confidence            9999999988887766555443331  00000000  00111111111100111111110                    


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCCCchHHH
Q 021040          163 VLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARIS  242 (318)
Q Consensus       163 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~  242 (318)
                                                     ...+....+||..+....+++..+++.+.+.||++..-..++....+-.
T Consensus       145 -------------------------------~ke~tea~~R~~~~~~v~lG~~~~~vF~~~TrEP~~~~~~~~s~~~Rm~  193 (412)
T KOG4830|consen  145 -------------------------------VKESTEALIRLAGWLVVVLGITVAFVFYAFTREPTNSFSSDASELVRMH  193 (412)
T ss_pred             -------------------------------ccccHHHHHHHhhhheeeeceeEEEEEeecccCcccccCcchhhhhccc
Confidence                                           0112234466666554445554555556677887643222233334556


Q ss_pred             HHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhccccccchhhHHHHHHHHHHHHHHHHHH
Q 021040          243 WAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQ  307 (318)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~v~~~i~~~~~~  307 (318)
                      |...+++-.+.+....|++.....+..+.|+++|..+..+++++..+++|++.+++++..+.+..
T Consensus       194 W~~WF~~v~~YQiAllYmLsRL~iNiSQaYlaFfviddlqm~qsakAllP~v~Yl~SF~VS~v~~  258 (412)
T KOG4830|consen  194 WTSWFGHVQFYQIALLYMLSRLYINISQAYLAFFVIDDLQMEQSAKALLPMVAYLSSFSVSMVNS  258 (412)
T ss_pred             chhhhhhhHHHHHHHHHHHHHHHhhhhhhheeeEEeehhhHHHHHhhhhHHHHHHhhhhHHhhcc
Confidence            77789999999999999999999999999999999999999999999999999999998887654

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.70  E-value=2.8e-14  Score=136.06  Aligned_cols=165  Identities=12%  Similarity=-0.058  Sum_probs=121.3

Q ss_pred             hhhcccchHHHHHHHHHHHHHHHHHHH---hCCChhHHHHHHHHHHHHHHHHhhhhHHHhhh-ccCchHHHHHHHHHHHH
Q 021040           27 LYYGSGHMLNDITAACWFTYLLLFLTD---IGLSPRGAAAVMLSGQIADGFATIFIGELIDR-FGHFKIWHGAGSVLVAV  102 (318)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~l~~~l~~---~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr-~Grr~~~l~~g~~~~~i  102 (318)
                      +...+..+.+...++...++++.|+++   .|++..++|++.+.+.+...+++++.|+++|| +||||. +.++.++.++
T Consensus        13 ~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~-l~~~~~~~~~   91 (475)
T TIGR00924        13 FTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKT-MVLGGIVLML   91 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHH-HHHHHHHHHH
Confidence            344456677788888899999999986   59999999999999999999999999999999 899998 5678888777


Q ss_pred             HHHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCcc--chhHHHHHHHHHHHHHHHHHH
Q 021040          103 SFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNST--SRVVLTSCRNAFTMVANLSLY  180 (318)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~R~~~~~~~~~~~~~g~~~~~  180 (318)
                      +...+..       .+  +.....+.    ..+.+++.+...+...++++|..++++  +|+++.++.+...++|.++++
T Consensus        92 g~~~~~~-------~~--~~~~~~~~----~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~  158 (475)
T TIGR00924        92 GHFMLAM-------SI--YPDLIFYG----LGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISP  158 (475)
T ss_pred             HHHHHHh-------cc--cHhHHHHH----HHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHH
Confidence            7654431       11  12211221    134566777666677788888876432  488888999999999998887


Q ss_pred             HHHHHHHHhhccCcccchhHHHHHHHHHHHHHHHH
Q 021040          181 AIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCC  215 (318)
Q Consensus       181 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l  215 (318)
                      .+++.+..          ..+|++.+.+.++..++
T Consensus       159 ~l~g~l~~----------~~g~~~~f~~~~~~~~~  183 (475)
T TIGR00924       159 LLAGVIAE----------NYGYHVGFNLAAVGMVI  183 (475)
T ss_pred             HHHHHHHH----------hcChHHHHHHHHHHHHH
Confidence            76654432          24688888776644433

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.70  E-value=1.7e-14  Score=138.57  Aligned_cols=164  Identities=17%  Similarity=0.132  Sum_probs=108.9

Q ss_pred             CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccchhHHHHHHHHHHH
Q 021040           55 GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAA  134 (318)
Q Consensus        55 gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (318)
                      ..+..+.+++.+...+...+++++.|+++||+|||+. +.++.++..++......  .+     +.........+.+.++
T Consensus        52 ~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~-~~~~~~~~~v~~~~~~~--~~-----~~~~~~~~~~~~~~r~  123 (502)
T TIGR00887        52 PLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRV-YGMELIIMIIATVASGL--SP-----GSSPKSVMATLCFWRF  123 (502)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHH-HHHHHHHHHHHHHHHHH--cc-----CcccchHHHHHHHHHH
Confidence            3566788999999999999999999999999999998 45676666666544321  11     1111000112333345


Q ss_pred             HHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-ccc------------chhHH
Q 021040          135 IFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAK-THA------------DLENQ  201 (318)
Q Consensus       135 l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~-~~~------------~~~~~  201 (318)
                      +.+++.+...+....++.|.+| +++|+++.+..+....+|.++++.++..+...+... +..            ....+
T Consensus       124 l~G~~~g~~~~~~~~~~~e~~p-~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (502)
T TIGR00887       124 WLGVGIGGDYPLSAIITSEFAT-KKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYM  202 (502)
T ss_pred             HHHHHHhhhhHHHHHHHHHhcC-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhccc
Confidence            6778888877777889999886 589999999998888888888777665444322110 000            00136


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcccccc
Q 021040          202 YRWIAYSSIFIGCCFVGIFLSRTEEPR  228 (318)
Q Consensus       202 ~~~~~~i~~~~~~l~~~~~~~~~~e~~  228 (318)
                      ||+.+.+.++.+++ .++..+++||++
T Consensus       203 WR~~~~~~~ip~~i-~~~~~~~lpESp  228 (502)
T TIGR00887       203 WRILIGFGAVPALL-ALYFRLTIPETP  228 (502)
T ss_pred             HHHHHHHHHHHHHH-HHHHHHhCCCCH
Confidence            88888666555544 344456789874

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR00889 2A0110 nucleoside transporter

Probab=99.70  E-value=1.2e-14  Score=136.32  Aligned_cols=248  Identities=9%  Similarity=0.002  Sum_probs=140.0

Q ss_pred             chHHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCC
Q 021040           33 HMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGC  111 (318)
Q Consensus        33 ~~~~~~~~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~  111 (318)
                      .+..-..+.++.+++++++++. |++..++|++.++..+...+++|+.|.++||+||||+.+.++.+...++.....   
T Consensus        11 ~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~---   87 (418)
T TIGR00889        11 SFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAA---   87 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH---
Confidence            3444456777889999999885 999999999999999999999999999999998766556666665555443222   


Q ss_pred             CCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhh----cc----ccccCccchhHHHHHHHHHHHHHHHHHHHHH
Q 021040          112 MPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSM----VN----CITLNSTSRVVLTSCRNAFTMVANLSLYAIA  183 (318)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~----~~----~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~  183 (318)
                          +.+  +.+..+..+    ++.+++.+...+..+++    ..    |... ...|.+..+      .+|.++++.++
T Consensus        88 ----~~~--~~~~~~~~~----~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~-~~~~~r~~G------~lG~~ig~~l~  150 (418)
T TIGR00889        88 ----QVT--TPAGMFPVL----LANSLAYMPTIALTNSISYANLPQAGLDVVT-DFPPIRVMG------TIGFIAAMWAV  150 (418)
T ss_pred             ----Hhc--CHHHHHHHH----HHHHHHHccHHHHHHHHHHHHHhhcCCCchh-cCCCeeeeh------hHHHHHHHHHH
Confidence                111  122222222    23344443332222222    21    2222 223333332      34555554443


Q ss_pred             HHHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCCC---chHHHHHHHHhcHHHHHHHHHHH
Q 021040          184 FIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNS---HARISWAYWFKKILYYQVALVYM  260 (318)
Q Consensus       184 ~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~  260 (318)
                      +.+    ..      ...|. .+++.+++.++..++ .+.+||++++++++++.   ....+.++++|+|+++.+.+..+
T Consensus       151 g~l----~~------~~~~~-~f~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~  218 (418)
T TIGR00889       151 SLL----DI------ELSNI-QLYITAGSSALLGVF-ALTLPDIPVAKSTAKMSIKVMLGLDAFILFKNKRMAIFFFFSM  218 (418)
T ss_pred             HHh----cc------cchhH-HHHHHHHHHHHHHHH-HhcCCCCCCCccccccCHHHHhhhhHHHHhcCCCeeeHHHHHH
Confidence            322    11      11233 244444444444433 45678764322111111   11123467889999888887777


Q ss_pred             HHHHHHHHHHHHhHHhhhhcccccc--------chhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 021040          261 LTRLVVNVSQAYLAFYVINDLRMGQ--------SAKALVPAIIYICSFIVSILLQVISLKL  313 (318)
Q Consensus       261 ~~~~~~~~~~~~~~~yl~~~~g~~~--------~~~~~~~~~~~v~~~i~~~~~~~i~~~~  313 (318)
                      +..........+++.|+++. |.++        +..+....+..+..+++.+..+++.||.
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~  278 (418)
T TIGR00889       219 LLGAPLQITNIFGNGFLHEF-GRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRF  278 (418)
T ss_pred             HHHhHHHHHHHhHHHHHHHh-cccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            77776666778888888763 4332        2334444444555556666666666654

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.69  E-value=3.1e-14  Score=132.34  Aligned_cols=254  Identities=13%  Similarity=0.049  Sum_probs=148.5

Q ss_pred             HHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcc
Q 021040           37 DITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRI  116 (318)
Q Consensus        37 ~~~~~~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~  116 (318)
                      -..+..+.+|++.|+++.|+|..|+|.++++..+...+.+|++|.++||++++|..+.+..++.++.+.....       
T Consensus        15 f~~~G~~~p~~~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~-------   87 (400)
T PF03825_consen   15 FFAYGAFLPYLPLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAF-------   87 (400)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHH-------
Confidence            3456667799999999999999999999999999999999999999999987666565555555554433221       


Q ss_pred             cCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccc
Q 021040          117 LSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHA  196 (318)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~  196 (318)
                      .  .+.+..+...    .++.+.+....+-.+++.-+...  +++......|.++ .+|.++++......+....+    
T Consensus        88 ~--~~f~~~~~~~----~l~~~~~~p~~pl~dsi~~~~~~--~~~~~YG~iRlwG-SiGf~~~~~~~~~~~~~~~~----  154 (400)
T PF03825_consen   88 S--SSFWWLFVIM----LLFSFFFSPTMPLSDSIALSYLG--DRGKDYGRIRLWG-SIGFIVAALAFGGLLGGYLG----  154 (400)
T ss_pred             h--ccHHHHHHHH----HHHHHHHccHHHHHHHHHHHHcc--cccCCCCcchhhh-hHHHHHHHHHHHHHHHhhhc----
Confidence            1  1223222221    23445555544445555544332  2233334445444 34554443321111211110    


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHhcccccccccccC--CCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhH
Q 021040          197 DLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLR--GNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLA  274 (318)
Q Consensus       197 ~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (318)
                        .....+.+++.+....+..... +..|+.+.+++++  .++....+..+++|||+++...+..++.+.......+|.+
T Consensus       155 --~~~~~~~~~i~~~~~~ll~~~~-l~lp~~~~~~~~~~~~~~~~~~~~~~llk~~~~~~Fll~~~l~~~~~~~~~~f~~  231 (400)
T PF03825_consen  155 --ISGTSLIFYIAAILSLLLAGFA-LFLPKTPPKRSAKESVKKLLGLDALKLLKNPRFLVFLLAAFLIGISHAAYYTFFS  231 (400)
T ss_pred             --cccccHHHHHHHHHHHHHHHHH-HhCCCCccccccCCCcccccchHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence              1122233444444443333222 3345543221111  1122223445799999999988888888888889999999


Q ss_pred             HhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 021040          275 FYVINDLRMGQSAKALVPAIIYICSFIVSILLQVISLKL  313 (318)
Q Consensus       275 ~yl~~~~g~~~~~~~~~~~~~~v~~~i~~~~~~~i~~~~  313 (318)
                      .|+++.-|.+....+..-.+..++=++.-...+|+-+|.
T Consensus       232 ~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~  270 (400)
T PF03825_consen  232 IYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRF  270 (400)
T ss_pred             HHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999998666554444333343445556666667776665

>TIGR00898 2A0119 cation transport protein

Probab=99.68  E-value=8.2e-15  Score=140.67  Aligned_cols=233  Identities=15%  Similarity=0.111  Sum_probs=145.4

Q ss_pred             HHHhCCC---hhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccchhHHHH
Q 021040           51 LTDIGLS---PRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETI  127 (318)
Q Consensus        51 l~~~gls---~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  127 (318)
                      .+|.+++   +.+.+++.+++.++..+++++.|.++||+||||. +.++.++.+++......       .+  +....  
T Consensus       116 ~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~-~~~~~~~~~i~~~~~~~-------~~--~~~~~--  183 (505)
T TIGR00898       116 VTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKV-LLLSTLVTAVSGVLTAF-------SP--NYTVF--  183 (505)
T ss_pred             EEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHH-HHHHHHHHHHHHHHHHH-------cc--cHHHH--
Confidence            3445888   8999999999999999999999999999999998 45677766666543321       22  12222  


Q ss_pred             HHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchhHHHHHHHH
Q 021040          128 SYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAY  207 (318)
Q Consensus       128 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  207 (318)
                        .+.+++.+++.+...+...+++.|..+ +++|+.+.++.+.+..+|.++++.+     +.+.        .+||+.++
T Consensus       184 --~~~r~l~G~~~~~~~~~~~~~~~e~~~-~~~r~~~~~~~~~~~~~g~~~~~~~-----~~~~--------~~wr~~~~  247 (505)
T TIGR00898       184 --LVFRLLVGMGIGGIWVQAVVLNTEFLP-KKQRAIVGTLIQVFFSLGLVLLPLV-----AYFI--------PDWRWLQL  247 (505)
T ss_pred             --HHHHHHHHhhccchHHHHHHHhheecC-hhhhHHHHHHHHHHHHHHHHHHHHH-----HHHh--------hHHHHHHH
Confidence              233345777777777777888899886 5789888888777766666554433     2211        24999988


Q ss_pred             HHHHHHHHHHHHHHhcccccccc-----c-cc-------------------------CC---CCchHHHHHHHHhcHHHH
Q 021040          208 SSIFIGCCFVGIFLSRTEEPRLK-----M-GL-------------------------RG---NSHARISWAYWFKKILYY  253 (318)
Q Consensus       208 i~~~~~~l~~~~~~~~~~e~~~~-----~-~~-------------------------~~---~~~~~~~~~~~~~~~~~~  253 (318)
                      +.+++.++..+.. +++||+++.     + ++                         ++   ++..+..+++++|+|.++
T Consensus       248 ~~~i~~~~~~~~~-~~~~esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  326 (505)
T TIGR00898       248 AVSLPTFLFFLLS-WFVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLR  326 (505)
T ss_pred             HHHHHHHHHHHHH-HhcCCChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHH
Confidence            8877766655544 667876420     0 00                         00   000113567888999888


Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHhhhhccccccchh-hHHHHHHHHHHHHHHHHHHHHHHhh
Q 021040          254 QVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAK-ALVPAIIYICSFIVSILLQVISLKL  313 (318)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~-~~~~~~~~v~~~i~~~~~~~i~~~~  313 (318)
                      ...+...+.++........++. ..+..+.+.... ........++.++++.+.||+++|.
T Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~dr~grr~  386 (505)
T TIGR00898       327 KTTLCLMMLWFTTAFSYYGLVL-DLGNLGGNIYLDLFISGLVELPAKLITLLLIDRLGRRY  386 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhc-cccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence            7766655555443332222222 233334443222 2223344456777778888877663

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.67  E-value=1.4e-14  Score=133.14  Aligned_cols=269  Identities=10%  Similarity=0.064  Sum_probs=144.2

Q ss_pred             chhhhhhcccchHHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHH-
Q 021040           23 RWSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLV-  100 (318)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~-  100 (318)
                      .+..+.++...+..-..+++..+|++.|++|. |+|++++|.++++..+...+.+|+.|.++||.|.||..+..-.++. 
T Consensus         6 ~~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~   85 (412)
T PF01306_consen    6 NKNYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLL   85 (412)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHH
Confidence            33445556666666677889999999999985 9999999999999999999999999999999997776443322222 


Q ss_pred             HHHHHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccC-ccchhHHHHHHHHHHHHHHHHH
Q 021040          101 AVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLN-STSRVVLTSCRNAFTMVANLSL  179 (318)
Q Consensus       101 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~R~~~~~~~~~~~~~g~~~~  179 (318)
                      ..+-.+.|. ..|  +-+. +.   .+..++..+..++++....+...++..+.... .-|-|+   .|.++ .+|.+++
T Consensus        86 l~~pff~~v-~~p--ll~~-n~---~lg~iig~i~l~~~f~~~~~~~Ea~~er~sr~~~feYG~---~R~wG-Sig~ai~  154 (412)
T PF01306_consen   86 LFGPFFIYV-FGP--LLQS-NF---WLGAIIGGIYLGLVFNAGVPLSEAYAERVSRRNGFEYGR---ARMWG-SIGFAIA  154 (412)
T ss_dssp             TCHHHHHHT-HHH--HHHT-T----HHHHHHTTTTTTTTTTTHHHHHHHHHHHHHHHHSS-HHH---HHHHH-HHHHHHH
T ss_pred             HHHHHHHHH-HHH--HHHH-HH---HHHHHHHHHHHHHHHcccchHHHHHHHHHHHHhcCCcch---HHHHh-hHHHHHH
Confidence            122222221 011  0001 11   11111111112333333344444454333211 112233   34444 3455566


Q ss_pred             HHHHHHHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhccccccccc---c-cC--CCCchHHHHHHHHhcHHHH
Q 021040          180 YAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKM---G-LR--GNSHARISWAYWFKKILYY  253 (318)
Q Consensus       180 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~---~-~~--~~~~~~~~~~~~~~~~~~~  253 (318)
                      +.+++.+.+.           +-...+++....+++..++..+.-||.+++.   + ++  +++...++..+++|+|++|
T Consensus       155 s~~~G~L~~i-----------~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~k~~~fw  223 (412)
T PF01306_consen  155 SLLAGILFNI-----------NPNIIFWIASAAAIILLLLLLLLKPDVPPQAEVADALGAKKDKVSLKDVLSLFKMRNFW  223 (412)
T ss_dssp             HHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHSS---SSSSS-SSTTSSS------HHHHHHHTTSHHHH
T ss_pred             HHHhheeeee-----------CccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhhcccccCCCCCcHHHHHHHhcchhHH
Confidence            6666666642           1233444444444444333333322322111   1 11  1111234567899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHhhhhccccc---cchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 021040          254 QVALVYMLTRLVVNVSQAYLAFYVINDLRMG---QSAKALVPAIIYICSFIVSILLQVISLKL  313 (318)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~---~~~~~~~~~~~~v~~~i~~~~~~~i~~~~  313 (318)
                      .+++........++..+..++.|.....+-.   +...+.+-.+.-+.=++.-.+.|++-+|+
T Consensus       224 ~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~ri  286 (412)
T PF01306_consen  224 FFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRI  286 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9888777777788888888888888765533   23344444444444455555555555553

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.66  E-value=7.5e-14  Score=138.29  Aligned_cols=170  Identities=13%  Similarity=-0.024  Sum_probs=115.0

Q ss_pred             HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccch
Q 021040           43 WFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTL  122 (318)
Q Consensus        43 ~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~  122 (318)
                      ....+|....+.|++..+.+++.++..++.+++++++|+++||+|||+.+ +++.++.+++.++..       +.+  +.
T Consensus       186 is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~l-ii~lil~~i~~ll~a-------fa~--s~  255 (742)
T TIGR01299       186 VGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCL-LICLSVNGFFAFFSS-------FVQ--GY  255 (742)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHH-HHHHHHHHHHHHHHH-------HHh--hH
Confidence            33344444455699999999999999999999999999999999999984 556666665544332       111  12


Q ss_pred             hHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC---cccchh
Q 021040          123 KVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAK---THADLE  199 (318)
Q Consensus       123 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~---~~~~~~  199 (318)
                      ..+    .+.+++.+++.+...+...+++.|..+ +++|++..++.+.+..+|.++++.++..++..++-.   +.....
T Consensus       256 ~~l----lv~R~l~G~g~g~~~p~~~~~isE~~p-~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~  330 (742)
T TIGR01299       256 GFF----LFCRLLSGFGIGGAIPIVFSYFAEFLA-QEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQF  330 (742)
T ss_pred             HHH----HHHHHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhcccccccc
Confidence            222    223346777777777777888899886 578999999888888888888777665554322100   000012


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 021040          200 NQYRWIAYSSIFIGCCFVGIFLSRTEEPR  228 (318)
Q Consensus       200 ~~~~~~~~i~~~~~~l~~~~~~~~~~e~~  228 (318)
                      .+||+.+++.++.+++. ++..+++||++
T Consensus       331 ~gWR~l~~i~~lp~ll~-ll~~~~lPESP  358 (742)
T TIGR01299       331 HSWRVFVIVCAFPCVFA-IGALTFMPESP  358 (742)
T ss_pred             ccHHHHHHHHHHHHHHH-HHHHHHcCCCH
Confidence            47998887766555443 45556788874

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.65  E-value=3.7e-13  Score=121.25  Aligned_cols=255  Identities=12%  Similarity=0.048  Sum_probs=166.6

Q ss_pred             HHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccch
Q 021040           44 FTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTL  122 (318)
Q Consensus        44 ~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~  122 (318)
                      +-.+.|.+++. +++..+++++...+..+..+.+.+.|++.+|+|+|+. +..|..+.+++....|    |.+  .... 
T Consensus        32 ~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~g-i~lgL~l~avg~~lF~----pAa--~~~~-  103 (422)
T COG0738          32 NDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAG-IVLGLLLYAVGAALFW----PAA--SSKS-  103 (422)
T ss_pred             chhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHH-HHHHHHHHHHHHHHHh----hhh--hhhh-
Confidence            34566777776 9999999999999999999999999999999999999 6789999999866443    211  1111 


Q ss_pred             hHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh--hccCcc-----
Q 021040          123 KVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSV--STAKTH-----  195 (318)
Q Consensus       123 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~--~~~~~~-----  195 (318)
                      .   ..++...++.+.|.+..++..++++..+.++ ++...-....+.++.+|+++++.++..++..  ....+.     
T Consensus       104 y---~~FL~~lFila~Gi~~LetaaNp~v~~lg~~-~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~  179 (422)
T COG0738         104 Y---GFFLVALFILASGIGLLETAANPYVTLLGKP-ESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILA  179 (422)
T ss_pred             H---HHHHHHHHHHHhhhHHHHhccchHHHHhCCc-hhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHH
Confidence            1   1222222456677788888889999888754 3333445667788889999888887766641  100000     


Q ss_pred             --cchhHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCCCchH-HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHH
Q 021040          196 --ADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHAR-ISWAYWFKKILYYQVALVYMLTRLVVNVSQAY  272 (318)
Q Consensus       196 --~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (318)
                        +.....+++++...+...+++++.. ...|-++.+++++++.+.. ....+++|||.++...+..++.-.......++
T Consensus       180 ~~~~~~~~v~~pYl~~~~~lvll~v~~-~~~k~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~gvl~~FlYVG~Eva~gsf  258 (422)
T COG0738         180 IKGADASSVQFPYLILAGLLVLLAVLI-LLSKLPDLQVAAPSLGASGSAGLSSLFQNKHLRLGVLAIFLYVGAEVAIGSF  258 (422)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHHH-HhccCCcCCcccccccccccchHHHHHhChHHHHHHHHHHHHHhHHHHHHHH
Confidence              0012346667766665555554433 2233222222111111111 15678999999999999999888888999999


Q ss_pred             hHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 021040          273 LAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQVISL  311 (318)
Q Consensus       273 ~~~yl~~~~g~~~~~~~~~~~~~~v~~~i~~~~~~~i~~  311 (318)
                      ++.|++|..|.+..+.........++.+++-++..++-+
T Consensus       259 l~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~  297 (422)
T COG0738         259 LVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMS  297 (422)
T ss_pred             HHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999998888765544444444444444444333333

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=99.62  E-value=2.5e-13  Score=123.24  Aligned_cols=250  Identities=10%  Similarity=0.051  Sum_probs=167.7

Q ss_pred             HHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhcc-----CchHHHHHHHHHHHHHHHHHhCCCCCCcccC-----cc
Q 021040           51 LTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFG-----HFKIWHGAGSVLVAVSFSSVFGGCMPCRILS-----TS  120 (318)
Q Consensus        51 l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~G-----rr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~-----~~  120 (318)
                      ..|++++...++..++...+. ....|.+|+.||+.+     ||.||++.|.++...+....-.  ....+..     +.
T Consensus         7 IvEL~vpA~lv~~lval~~~~-ap~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~--a~~~l~~~~~~~~~   83 (403)
T PF03209_consen    7 IVELGVPAWLVALLVALHYLV-APLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPF--ALLLLAESGQQSSG   83 (403)
T ss_pred             HHHhccHHHHHHHHHHHHHHH-HHHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHH--HHHHHccccccccc
Confidence            456799999999998777665 457999999999988     9999999998887775432210  0000111     01


Q ss_pred             chhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchhH
Q 021040          121 TLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLEN  200 (318)
Q Consensus       121 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~  200 (318)
                      +.+.-.....+...++|+|.+....++.++..|.++ +|+|+++.++.+.+..+|.++++.+.+.++..+.       ..
T Consensus        84 ~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~-e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s-------~~  155 (403)
T PF03209_consen   84 PFWLGLALAALAFLLYGLGVHASGTSFLALLADLAP-EERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFS-------PE  155 (403)
T ss_pred             ccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCC-HhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccC-------HH
Confidence            111111222222346889999999999999999986 5899999999999989998888776665553221       12


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhccccccccc---ccCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhHHhh
Q 021040          201 QYRWIAYSSIFIGCCFVGIFLSRTEEPRLKM---GLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYV  277 (318)
Q Consensus       201 ~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl  277 (318)
                      .....+-..+++.++..++..+.++.+..+.   +++++.++++.++++.++|+-+.+...-++..++++.=+..+-+|-
T Consensus       156 rL~~v~~~~a~i~~~l~~ia~wg~E~r~~~~~~~~~~~~~~f~~a~~~~~~~~~a~~f~~fl~l~t~a~~~QD~iLEPyg  235 (403)
T PF03209_consen  156 RLIQVIQGVALIALLLNLIALWGQEPRRSRRAAAAERPRPPFREAWRQVWASPQARRFFVFLFLGTLAFFMQDVILEPYG  235 (403)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccCCcccccCCCCCCccHHHHHHHHHhCCChhHHHHHHHHHHHHHHhhHHHcCCch
Confidence            2222333333444444455545443222211   2345567889999999999988887777778888888888899999


Q ss_pred             hhccccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 021040          278 INDLRMGQSAKALVPAIIYICSFIVSILLQVISL  311 (318)
Q Consensus       278 ~~~~g~~~~~~~~~~~~~~v~~~i~~~~~~~i~~  311 (318)
                      -+.+|++..+..-+....-.+.+++-.+.+++..
T Consensus       236 g~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~  269 (403)
T PF03209_consen  236 GEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLS  269 (403)
T ss_pred             hHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999877666665555555555555554433

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.61  E-value=4.4e-14  Score=133.69  Aligned_cols=236  Identities=12%  Similarity=0.029  Sum_probs=164.5

Q ss_pred             hCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccchhHHHHHHHHHH
Q 021040           54 IGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFA  133 (318)
Q Consensus        54 ~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (318)
                      .++...+.+.+.+++.++.++++++.|.+.||+.-.+. +....+.+.+..++..       ..  .+...    +++.+
T Consensus        76 l~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~-l~~~~~~w~~~~~~~~-------~~--~s~~~----~ialr  141 (495)
T KOG2533|consen   76 LKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKG-LSVSGILWGLFGFLTA-------AV--HSFPG----LIALR  141 (495)
T ss_pred             cchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHH-HHHHHHHHHHHHHHHH-------HH--hhhHH----HHHHH
Confidence            36778899999999999999999999999999995444 3322233222221111       01  11222    23334


Q ss_pred             HHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchhHHHHHHHHHHHHHH
Q 021040          134 AIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIG  213 (318)
Q Consensus       134 ~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~  213 (318)
                      ++.|+.-+..-++...++..... ++||+...++.+....+|++.++.+...+...-+    .....+|||.|++.|++.
T Consensus       142 ~llGl~es~~wP~~~~~lg~wy~-~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~----~~~~~gW~~~FiI~G~i~  216 (495)
T KOG2533|consen  142 FLLGLFESGGWPGVVAILGNWYG-KSERGLRMGIWYASASLGNIFGGLIAYGVFKLNG----SGGLAGWRWLFIIEGVIT  216 (495)
T ss_pred             HHHHHHhcccchHHHHHHHhhcC-hhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcC----CCCcCCceeehhHHHHHH
Confidence            55777777777677777776664 6899999999999999999888777654433111    112468999999999999


Q ss_pred             HHHHHHHHhccccccccc-----cc----------C-----CCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHh
Q 021040          214 CCFVGIFLSRTEEPRLKM-----GL----------R-----GNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYL  273 (318)
Q Consensus       214 ~l~~~~~~~~~~e~~~~~-----~~----------~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (318)
                      ++..+++++++|+.+.+.     ++          +     +++..+..+++.+|+|..|.+.+.+++.....++..+|+
T Consensus       217 ~~~gi~~f~~lp~~P~~~~fl~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~a~~dp~vw~~~l~~~~~~lv~~~~~~~l  296 (495)
T KOG2533|consen  217 LVLGIVVFFFLPDNPSKAWFLTDEEKELVVERLRESPSGGIENKFKWKGFKEALKDPGVWPFSLCYFFLKLVNYGFSYWL  296 (495)
T ss_pred             HHHHheEEEEecCChhhccccchHHHHHHHHHHHhccCCCcccccCHHHHHHHHhchhHHHHHHHHHHHhhccccHHHHH
Confidence            999999988888765411     10          0     011345678999999999999999999999999999999


Q ss_pred             HHhhhhccccccchhhHHHHHHH----HHHHHHHHHHHH
Q 021040          274 AFYVINDLRMGQSAKALVPAIIY----ICSFIVSILLQV  308 (318)
Q Consensus       274 ~~yl~~~~g~~~~~~~~~~~~~~----v~~~i~~~~~~~  308 (318)
                      |.|+++..|.+......++....    ++.++++++.||
T Consensus       297 pl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr  335 (495)
T KOG2533|consen  297 PLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDR  335 (495)
T ss_pred             HHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHH
Confidence            99999977787654444443334    455555555555

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.61  E-value=3.9e-15  Score=133.29  Aligned_cols=229  Identities=13%  Similarity=0.055  Sum_probs=165.1

Q ss_pred             CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccchhHHHHHHHHHHH
Q 021040           55 GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAA  134 (318)
Q Consensus        55 gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (318)
                      +-+.+++|++++...+.+.+.+|+.|.+.||.|+|-| +++|...+..+..+..       +.  ++...+++    .+.
T Consensus       102 ~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ip-m~~Gl~vmf~sTilFa-------fg--~sy~~l~v----AR~  167 (464)
T KOG3764|consen  102 DRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIP-MVAGLFVMFLSTILFA-------FG--NSYPMLFV----ARS  167 (464)
T ss_pred             cccccchhHHHHHHHHHHHHhcccchhhHHHhccccH-HHHHHHHHHHHHHHHH-------Hc--chhHHHHH----HHH
Confidence            5678899999999999999999999999999999999 6788888777765332       11  23333333    335


Q ss_pred             HHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchhHHHHHHHHHHHHHHH
Q 021040          135 IFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGC  214 (318)
Q Consensus       135 l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~  214 (318)
                      +.++|.+...+...++++|..++++||+++.|..-.+..+|-++++-+++.+...          .+++..|++.+++.+
T Consensus       168 LQgvgsA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~----------~Gk~aPFlVL~~v~L  237 (464)
T KOG3764|consen  168 LQGVGSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEF----------AGKSAPFLVLAIVLL  237 (464)
T ss_pred             HhhhhHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhh----------cCCcCcHHHHHHHHH
Confidence            6778999888888999999999999999999999888888888877776666543          356778889888887


Q ss_pred             HHHHHHHhcccccccccccCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhccccccch--hhHHH
Q 021040          215 CFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSA--KALVP  292 (318)
Q Consensus       215 l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~--~~~~~  292 (318)
                      +-..+-++.++.++..+++   ......+++++++|..+....+--.++........-++.+..|.+..+..+  ...+|
T Consensus       238 ld~~L~l~vi~p~~~~~~~---~~~~~~~~~Ll~dP~I~~~agai~~~n~~lafLePtlslwm~e~m~~p~w~~G~~fLp  314 (464)
T KOG3764|consen  238 LDGALQLLVIEPTEMDPDS---TEQGTPMWSLLMDPYILLIAGAITFSNSSLAFLEPTLSLWMLETMFTPGWEVGLAFLP  314 (464)
T ss_pred             HHHHHHHheeCccccCccc---cccCccHHHHHhCchHhhhhcchhhccchHHHhCcccHHHHHHhccCCCcceeeeecc
Confidence            7776665555443322211   112234788999998887777777777777777888888888888844423  33444


Q ss_pred             HHHHHHHHHHHHHHHHHHHh
Q 021040          293 AIIYICSFIVSILLQVISLK  312 (318)
Q Consensus       293 ~~~~v~~~i~~~~~~~i~~~  312 (318)
                      .  .+..+++..+.+++.+|
T Consensus       315 ~--~~~y~ig~~lfg~la~k  332 (464)
T KOG3764|consen  315 A--SLSYAIGTNLFGKLADK  332 (464)
T ss_pred             c--ccchhccCchHHHHHHh
Confidence            3  33444445555555544

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.60  E-value=1.6e-12  Score=123.34  Aligned_cols=158  Identities=14%  Similarity=0.005  Sum_probs=111.7

Q ss_pred             ccchHHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhc-cCchHHHHHHHHHHHHHHHHHh
Q 021040           31 SGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRF-GHFKIWHGAGSVLVAVSFSSVF  108 (318)
Q Consensus        31 ~~~~~~~~~~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~-Grr~~~l~~g~~~~~i~~~~~~  108 (318)
                      +..+......+....+++.|+++. |+++.+.+.+...+.....+..+++|+++||+ ||||. +.+|.++.+++...+.
T Consensus        16 ~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~-iliG~il~~lg~lll~   94 (493)
T PRK15462         16 ALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMA-VMLGALLMAIGHVVLG   94 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHH-HHHHHHHHHHHHHHHH
Confidence            344566677777888999999885 99999999999999999999999999999999 99998 5678887777754332


Q ss_pred             CCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCc-cchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021040          109 GGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNS-TSRVVLTSCRNAFTMVANLSLYAIAFIVF  187 (318)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~R~~~~~~~~~~~~~g~~~~~~~~~~l~  187 (318)
                      .       ... ......+..    .+..+|.+...+...++++|..+++ ++|++..++.+.+.++|+.+++.+++.+.
T Consensus        95 ~-------~~~-~~~~~~l~l----~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~  162 (493)
T PRK15462         95 A-------SEI-HPSFLYLSL----AIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQ  162 (493)
T ss_pred             H-------hhc-chhHHHHHH----HHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHH
Confidence            1       111 111111111    1222445555555667888988654 36888899999888888887776665543


Q ss_pred             HhhccCcccchhHHHHHHHHHHHH
Q 021040          188 SVSTAKTHADLENQYRWIAYSSIF  211 (318)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~i~~~  211 (318)
                      .          ..+|++.|.+.++
T Consensus       163 ~----------~~Gw~~~F~iaai  176 (493)
T PRK15462        163 E----------EYSWAMGFGLAAV  176 (493)
T ss_pred             h----------hhChHHHHHHHHH
Confidence            2          2468888876554

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.56  E-value=6.2e-12  Score=116.96  Aligned_cols=260  Identities=9%  Similarity=0.004  Sum_probs=153.4

Q ss_pred             CCchhhhhhccc--chHHHHHHHHHHHHHHHHHHH-hCCChhH-HHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHH
Q 021040           21 VGRWSVLYYGSG--HMLNDITAACWFTYLLLFLTD-IGLSPRG-AAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAG   96 (318)
Q Consensus        21 ~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~l~~-~gls~~~-~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g   96 (318)
                      ++.|++..+-++  .|..++=  .-.++..+++.+ .|+|+.+ .|.+..++....++.+++.|.++||+|.|+. +..+
T Consensus        22 ~~~W~~~~~~lC~fGF~~e~R--~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~v-L~l~   98 (511)
T TIGR00806        22 LKSWRVLVLYLCFYGFMAQFR--PGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPV-LVLQ   98 (511)
T ss_pred             hcchhHHHHHHHHHHHHHHhh--chHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHH-HHHH
Confidence            345555544333  3333222  223566677775 5999999 9999999999999999999999999999987 5667


Q ss_pred             HHHHHHHHHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHH
Q 021040           97 SVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVAN  176 (318)
Q Consensus        97 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~  176 (318)
                      .+..++...++.+       .  .+    +..+.+.++++|++.+... ++..++...+| ++||++++++.+.+..+|.
T Consensus        99 ~l~Wsl~t~L~~f-------a--~S----l~~L~i~R~llGvaEA~~~-A~~syI~~WfP-~kER~ratsi~~sg~~vG~  163 (511)
T TIGR00806        99 ALSFVCVWLLLLL-------G--TS----VWHMQLMEVFYSVTMAARI-AYSSYIFSLVP-PSRYQRAAAYSRAAVLLGV  163 (511)
T ss_pred             HHHHHHHHHHHHH-------H--HH----HHHHHHHHHHHHHHHHHHH-HHHHHHHHHCC-HHHHHHHHHHHHHHHHHHH
Confidence            7777776654421       1  11    2233444567888888777 77778888775 6899999999999999999


Q ss_pred             HHHHHHHHHHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhccccccc------c-----------cc--cC-C-
Q 021040          177 LSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRL------K-----------MG--LR-G-  235 (318)
Q Consensus       177 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~------~-----------~~--~~-~-  235 (318)
                      ++++.+++.+. .++       ...|+...++.. ...+++++.-+++|.+++      +           +.  ++ . 
T Consensus       164 ~Ia~~L~qll~-s~g-------Wr~y~~Ln~Isl-~s~~~a~~~a~~LP~~~~sl~f~~~~~~~~~~~~~~~~~~~~~~~  234 (511)
T TIGR00806       164 FLSSVLGQLLV-TLG-------WISYSTLNIISL-VFMTFSVFLALFLKRPKRSLFFNRLEDVRGALPCELDQMVPGPGG  234 (511)
T ss_pred             HHHHHHHHHHH-hcC-------chhHHHHHHHHH-HHHHHHHHHHHhCCCCchhhhhccccccccccccccccCCCCCcc
Confidence            88877765522 111       122333333322 233333333344442211      0           00  00 0 


Q ss_pred             -C----C--------chHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhccccccchhhHHHHHHHHHHHHH
Q 021040          236 -N----S--------HARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIV  302 (318)
Q Consensus       236 -~----~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~v~~~i~  302 (318)
                       +    +        .....+++..+||.++.-.+-..+...+++...+|.-.--++.-+-.+...+.+-.+..+.+.++
T Consensus       235 ~~~~~~~~~~~~~~~~l~~~~~~~y~n~~vl~WSlWwa~a~~g~~qv~~Y~Q~LW~~v~~~~~~yNG~veA~~tllga~~  314 (511)
T TIGR00806       235 KLEDYLGTCRDSFLVRMLSELVTIYRNPQLLLWSLWWVFNSAGYYLITYYVHTLWGTLDESLNKYNGAVDAASTLLGAIT  314 (511)
T ss_pred             ccchhhhhhhhHHHHHHHHHHHHHhcCcchhhhhHHHHHHhhHHHHHHHHHHHHHHHcCCCccccCCHHHHHHHHHHHHH
Confidence             0    0        01234556678888777666677777777777666643333332211224444433333333334


Q ss_pred             HHHHH
Q 021040          303 SILLQ  307 (318)
Q Consensus       303 ~~~~~  307 (318)
                      ++..+
T Consensus       315 a~~ag  319 (511)
T TIGR00806       315 SFIAG  319 (511)
T ss_pred             HHHHH
Confidence            44433

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.56  E-value=3.6e-12  Score=122.36  Aligned_cols=162  Identities=10%  Similarity=-0.023  Sum_probs=110.8

Q ss_pred             cccchHHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhh-ccCchHHHHHHHHHHHHHHHHH
Q 021040           30 GSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDR-FGHFKIWHGAGSVLVAVSFSSV  107 (318)
Q Consensus        30 ~~~~~~~~~~~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr-~Grr~~~l~~g~~~~~i~~~~~  107 (318)
                      .+..+......+...++++.|+++. |++.++.+.+...+........++.|+++|| +|||+. +..+.++.+++...+
T Consensus        27 ~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~-~~~g~~~~~ig~~l~  105 (500)
T PRK09584         27 FSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRV-IMLGAIVLAIGYALV  105 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHH-HHHHHHHHHHHHHHH
Confidence            3445667777788888999999775 9999999998888777777777899999999 599998 567877777775544


Q ss_pred             hCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCcc-chhHHHHHHHHHHHHHHHHHHHHHHHH
Q 021040          108 FGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNST-SRVVLTSCRNAFTMVANLSLYAIAFIV  186 (318)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~R~~~~~~~~~~~~~g~~~~~~~~~~l  186 (318)
                      ..       +++ ......+.    ..+.+++.+...+...+++.|..++++ +|+++.++.+.+.++|..+++.+++.+
T Consensus       106 ~~-------~~~-~~~~l~~~----~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l  173 (500)
T PRK09584        106 AW-------SGH-DAGIVYMG----MATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWL  173 (500)
T ss_pred             HH-------hcc-cHHHHHHH----HHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHH
Confidence            21       111 11111111    134556666666666678888876433 345677778888888888877666555


Q ss_pred             HHhhccCcccchhHHHHHHHHHHHHHHH
Q 021040          187 FSVSTAKTHADLENQYRWIAYSSIFIGC  214 (318)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~  214 (318)
                      .+          ..+|++.|.+.++...
T Consensus       174 ~~----------~~g~~~~F~i~~i~~~  191 (500)
T PRK09584        174 AA----------KYGWSVAFALSVVGML  191 (500)
T ss_pred             HH----------hhCHHHHHHHHHHHHH
Confidence            43          2478988877664333

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.51  E-value=3.5e-12  Score=119.68  Aligned_cols=233  Identities=9%  Similarity=0.012  Sum_probs=150.5

Q ss_pred             HHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHH
Q 021040           60 GAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVG  139 (318)
Q Consensus        60 ~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  139 (318)
                      ..+.+.+++.++.++++.+.|.++||+|||.. ++...++..++...... +-   ..  .+.....+.    +++.|+.
T Consensus        61 lwS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~-l~~~~~l~~~~~~~~~~-s~---~~--~~~e~li~G----R~i~Gl~  129 (485)
T KOG0569|consen   61 LWSLIVSIFFIGGMIGSFSSGLLADRFGRKNA-LLLSNLLAVLAALLMGL-SK---SA--PSFEMLILG----RLIVGLA  129 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcchHH-HHHHHHHHHHHHHHHHH-HH---Hh--hhHHHHHHH----HHHHHHH
Confidence            46677889999999999999999999999977 45565555554433211 00   01  112222333    3456666


Q ss_pred             HhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHH
Q 021040          140 WAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGI  219 (318)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~  219 (318)
                      .+........++.|.+| .+-||......+.+..+|.+++..++.|-+  +|.      ...|.+.+.+..+++++. ++
T Consensus       130 ~gl~~~~~pmyl~E~sP-~~~RG~~g~~~~~~~~~g~ll~~~~~l~~i--lGt------~~~W~~l~~~~~i~~~~~-l~  199 (485)
T KOG0569|consen  130 CGLSTGLVPMYLTEISP-KNLRGALGTLLQIGVVIGILLGQVLGLPSL--LGT------EDLWPYLLAFPLIPALLQ-LA  199 (485)
T ss_pred             hHHHHHHHHHHHhhcCh-hhhccHHHHHHHHHHHHHHHHHHHHccHHh--cCC------CcchHHHHHHHHHHHHHH-HH
Confidence            66666667778899987 478999999999998999888877665533  221      357888877766665544 44


Q ss_pred             HHhccccccc------cccc------------C---------------CC--CchHHHHHHHHhcHHHHHHHHHHHHH--
Q 021040          220 FLSRTEEPRL------KMGL------------R---------------GN--SHARISWAYWFKKILYYQVALVYMLT--  262 (318)
Q Consensus       220 ~~~~~~e~~~------~~~~------------~---------------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--  262 (318)
                      ...++||+|+      ++++            +               ++  +....++++++|||..+......+..  
T Consensus       200 ~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~  279 (485)
T KOG0569|consen  200 LLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLREIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSF  279 (485)
T ss_pred             HHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHHHHHhccccccCCcHHHHhcCcchhHHHHHHHHHHH
Confidence            4577898853      1110            0               00  01223578899988766654333333  


Q ss_pred             --HHHHHHHHHHhHHhhhhccccccch--h--hHHHHHHHHHHHHHHHHHHHHHHhh
Q 021040          263 --RLVVNVSQAYLAFYVINDLRMGQSA--K--ALVPAIIYICSFIVSILLQVISLKL  313 (318)
Q Consensus       263 --~~~~~~~~~~~~~yl~~~~g~~~~~--~--~~~~~~~~v~~~i~~~~~~~i~~~~  313 (318)
                        ++.......++...+.+..|++...  .  .....+..+.++++.++.||.+||-
T Consensus       280 ~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRp  336 (485)
T KOG0569|consen  280 AQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRP  336 (485)
T ss_pred             HHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcH
Confidence              3333345556667777777887642  2  2334566689999999999999873

>TIGR00788 fbt folate/biopterin transporter

Probab=99.51  E-value=2.6e-12  Score=122.33  Aligned_cols=252  Identities=12%  Similarity=-0.006  Sum_probs=151.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhcc----CchHHHHHHHHHHH-HHHHHH
Q 021040           34 MLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFG----HFKIWHGAGSVLVA-VSFSSV  107 (318)
Q Consensus        34 ~~~~~~~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~G----rr~~~l~~g~~~~~-i~~~~~  107 (318)
                      +...+. ......+++++++. |+|+++++...+...+...+ .|++|.++||++    |||.|+.++.++.. +++..+
T Consensus        36 ~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~-K~l~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l  113 (468)
T TIGR00788        36 FVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWAL-KPFAGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLL  113 (468)
T ss_pred             HHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhc
Confidence            444444 55666778888875 99999999988888888777 677999999984    46777777766652 332211


Q ss_pred             hCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhH---HHHHHHHHHHHHHHHHHHHHH
Q 021040          108 FGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVV---LTSCRNAFTMVANLSLYAIAF  184 (318)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~---~~~~~~~~~~~g~~~~~~~~~  184 (318)
                           +  ..++ ... ...   +...+.+++.+..+++..+++.|..+  ++++.   ..++.+....+|.++++.+++
T Consensus       114 -----~--~~~~-~~~-~~~---~~~~l~~~~~a~~dv~~da~~~e~~~--~~~~~~~~~~s~~~~~~~~G~~vg~~l~G  179 (468)
T TIGR00788       114 -----P--GKVS-SAK-VAA---AFIFLAALAKALYDVLVDSLYSERIR--ESPSAGPSLVSWMWGASATGGLISSLLGG  179 (468)
T ss_pred             -----c--cccc-hHH-HHH---HHHHHHHHHHHHHHHhHHHHHhhhhh--cCCCcCCCeeeHHHHHHHHHHHHHHHHHH
Confidence                 1  1111 111 111   11235667788888899999999876  23322   333333334567777777666


Q ss_pred             HHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhccccccc--ccccCCC----------------CchHHHHHHH
Q 021040          185 IVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRL--KMGLRGN----------------SHARISWAYW  246 (318)
Q Consensus       185 ~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~--~~~~~~~----------------~~~~~~~~~~  246 (318)
                      .+...          .+|+..+++.+++.++. .+...+.||++.  .++.+++                ++...+.++.
T Consensus       180 ~l~~~----------~~~~~~f~~~a~l~ll~-~~~~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  248 (468)
T TIGR00788       180 PLLDK----------TLTRILFLITAALLLLQ-LFVSNLSKERRAFVRPRIGTYLEMNMALLTLGVLANVKVQILGLRGA  248 (468)
T ss_pred             HHHHh----------cCcchHHHHHHHHHHHH-HHHHHhcccccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHH
Confidence            65532          35777777777666655 444566788641  1110010                1112245566


Q ss_pred             HhcHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 021040          247 FKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQVISLK  312 (318)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~v~~~i~~~~~~~i~~~  312 (318)
                      +|+|+++..+...++.+..........-.+..+..|.++...+.+-....++++++..+.+|+.+|
T Consensus       249 l~~~~i~~~l~fifl~~~~~~~~~~~~f~~~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~  314 (468)
T TIGR00788       249 IQLLEIAKPLIFIFLSYANLPGASGSVFCATTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKT  314 (468)
T ss_pred             HhcHHHHHHHHHHHHHHhhcCCCCceeEEEEcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence            788888775554444111111111111123345678888888877777778889999988888764

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=99.49  E-value=6.2e-13  Score=121.24  Aligned_cols=160  Identities=17%  Similarity=0.175  Sum_probs=119.4

Q ss_pred             hhhhhhcccchHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhh----hccCchHHHHHHHHH
Q 021040           24 WSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELID----RFGHFKIWHGAGSVL   99 (318)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsD----r~Grr~~~l~~g~~~   99 (318)
                      ++.+......++.++.++...+|++||++++|++..+.+.+...+.+...+.||+.|..||    |||||||++..+.+.
T Consensus        32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~  111 (498)
T KOG0637|consen   32 RKLISVASIAAGVQFGWALELSYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLL  111 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHH
Confidence            5566777778899999999999999999999999999999999999999999999999999    699999999988888


Q ss_pred             HHHHHHHHhC-CCCCCcccCccch---hHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHH
Q 021040          100 VAVSFSSVFG-GCMPCRILSTSTL---KVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVA  175 (318)
Q Consensus       100 ~~i~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g  175 (318)
                      .+++...+-+ .-+-..+.++...   ......+++-..+.+++....+.|..++..|+..+++++.+++++...+..+|
T Consensus       112 i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avG  191 (498)
T KOG0637|consen  112 IAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVG  191 (498)
T ss_pred             HHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhc
Confidence            8887654311 0000001111111   11122222222367788878888999999999865444444889888898999


Q ss_pred             HHHHHHHH
Q 021040          176 NLSLYAIA  183 (318)
Q Consensus       176 ~~~~~~~~  183 (318)
                      +.+|...+
T Consensus       192 nvLGY~~g  199 (498)
T KOG0637|consen  192 NVLGYALG  199 (498)
T ss_pred             ceeeeecc
Confidence            98877654

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.46  E-value=9.7e-12  Score=118.77  Aligned_cols=241  Identities=16%  Similarity=0.079  Sum_probs=167.2

Q ss_pred             HHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccchhHHHH
Q 021040           48 LLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETI  127 (318)
Q Consensus        48 ~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  127 (318)
                      ..+.++++-+.++++++.++..-...+..|+.+.+.||+|.|.+ ++.|.++..+++.+..+       ..  +.+.+++
T Consensus        70 ~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v-~i~G~~v~~~g~~lssF-------~~--~i~~l~l  139 (509)
T KOG2504|consen   70 EELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTV-MIAGGLVAALGLLLSSF-------AT--SLWQLYL  139 (509)
T ss_pred             HHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHH-HHHHHHHHHHHHHHHHH-------Hh--hHHHHHH
Confidence            33334458899999999999999999999999999999999988 67888888888765432       21  2343444


Q ss_pred             HHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchhHHHHHHHH
Q 021040          128 SYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAY  207 (318)
Q Consensus       128 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  207 (318)
                      .+   .++.|+|.++...|....+...+  +++|+.++++...++.+|..+-+    ++...+..      ..+||+..+
T Consensus       140 t~---gvi~G~G~~~~~~paiviv~~YF--~kkR~lA~Gia~~GsG~G~~~~~----~l~~~l~~------~~G~r~~~l  204 (509)
T KOG2504|consen  140 TF---GVIGGLGLGLIYLPAVVILGTYF--EKKRALATGIAVSGTGVGTVVFP----PLLKYLLS------KYGWRGALL  204 (509)
T ss_pred             HH---HHHhhccchhhhcchhhhhhhHh--HHHHHHHHhhhhccCCcceeeHH----HHHHHHHH------HhCcHHHHH
Confidence            44   34677888887777766666554  47899999999888888876543    33333221      367899888


Q ss_pred             HHHHHHHHHHHHHHhcccccccc------------------------c---c----cC-----------CCC-----chH
Q 021040          208 SSIFIGCCFVGIFLSRTEEPRLK------------------------M---G----LR-----------GNS-----HAR  240 (318)
Q Consensus       208 i~~~~~~l~~~~~~~~~~e~~~~------------------------~---~----~~-----------~~~-----~~~  240 (318)
                      +.+.+.+-+.......-|.....                        .   +    .+           .+.     ..+
T Consensus       205 ~~~~~~l~~~~~~~~~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (509)
T KOG2504|consen  205 IFGGISLNVLVAGALLRPLSPPKKPNEEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPDKWRNSPLQ  284 (509)
T ss_pred             HHHHHHHHHHHHHHHcCCCCcCCCchhhhhhccccccccccccccccccccCCCCCCcccccchhhhhhCCccccccchh
Confidence            88777765555554433300000                        0   0    00           000     111


Q ss_pred             HHH----HHHHhcHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021040          241 ISW----AYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQVISLKLY  314 (318)
Q Consensus       241 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~v~~~i~~~~~~~i~~~~~  314 (318)
                      ...    .+++|+|.|+.+.+...+..+++.....++|.|.+ ..+.++.....+..+..+...++-++.+.+.|+-+
T Consensus       285 ~~~~~~d~~ll~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~-~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~  361 (509)
T KOG2504|consen  285 AFLSMLDLSLLKDPKFLLLALSNLFAYLGFNVPFVYLPSYAK-SLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPG  361 (509)
T ss_pred             hhhhhhhHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccc
Confidence            112    58899999999999999999999999999999999 67888876666666666666777666666666544

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.45  E-value=1.1e-10  Score=103.93  Aligned_cols=240  Identities=15%  Similarity=0.102  Sum_probs=165.9

Q ss_pred             HHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccchhH
Q 021040           45 TYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKV  124 (318)
Q Consensus        45 ~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~  124 (318)
                      +.++-.-.|.|+|.+.+|++.++..++-.+.+|+...++.|+|.+|. +..+.++.+++...=-   .       .+...
T Consensus        33 PLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~-l~~~Llli~~G~~iR~---~-------~~~~~  101 (395)
T COG2807          33 PLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERS-LFLALLLIAAGILIRS---L-------GGLPL  101 (395)
T ss_pred             hhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHH-HHHHHHHHHHHHHHHh---c-------ccHHH
Confidence            33434434459999999999999999999999999999999999888 5677777777754221   0       01111


Q ss_pred             HHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchhHHHHH
Q 021040          125 ETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRW  204 (318)
Q Consensus       125 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  204 (318)
                      ++.    -..+.+.+.+..++-..+++.+-+  +|+-+.+++.+.....+|+.+++.+..|+....         .+|+.
T Consensus       102 L~~----gt~l~G~gIav~nVLLPslIK~~F--pk~~~~mtglYs~sl~~~aaLaa~lavpla~~~---------~gW~~  166 (395)
T COG2807         102 LFL----GTLLAGAGIAVINVLLPSLIKRDF--PKRVGLMTGLYSTSLGAGAALAAALAVPLAQHS---------GGWRG  166 (395)
T ss_pred             HHH----HHHHHHhhHHHHHHhhhHHHHhhc--ccchhhHHhHHHHHHHHHHHHHhhhhhHHHHhh---------ccHHH
Confidence            111    123455666666776777776654  356678889988888899998888887877542         36888


Q ss_pred             HHHHHHHHHHHHHHHHHhc-ccccccccccCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhcccc
Q 021040          205 IAYSSIFIGCCFVGIFLSR-TEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRM  283 (318)
Q Consensus       205 ~~~i~~~~~~l~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~  283 (318)
                      ...+-+.++++..++++.- .+|.  .+.   .+....+-.++.|||.-|.+.+..-++++.++....|+|.++.|. |+
T Consensus       167 aL~~WAl~allAl~~WlPq~~r~~--~~~---~~~~~~~~~~vw~~~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~~-G~  240 (395)
T COG2807         167 ALGFWALLALLALLIWLPQALREQ--AAS---IATKLVSVRKVWRSPLAWQVTLFMGLQSLLYYIVIGWLPAILIDR-GL  240 (395)
T ss_pred             HHHHHHHHHHHHHHHHhhhccccc--ccc---cccccccccccccCchhHHHHHHHHhhHHHHHHHHHHHHHHHHHc-CC
Confidence            7766666666665554332 1221  111   111122224678999999998888889999999999999999985 99


Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 021040          284 GQSAKALVPAIIYICSFIVSILLQVISLKLYSM  316 (318)
Q Consensus       284 ~~~~~~~~~~~~~v~~~i~~~~~~~i~~~~~~~  316 (318)
                      +.++.+.+-....+.++..++..+-+.+|-.|.
T Consensus       241 sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~  273 (395)
T COG2807         241 SAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQ  273 (395)
T ss_pred             CHHHhhhHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            987776665566666677777777776665443

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.45  E-value=6.7e-11  Score=113.85  Aligned_cols=240  Identities=14%  Similarity=0.097  Sum_probs=133.3

Q ss_pred             HHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccchhHHH
Q 021040           47 LLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVET  126 (318)
Q Consensus        47 l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  126 (318)
                      ++....|+|-+ ...+|+.+...+..++..|+.|++||.||||.. .+.+.++..++.+...       .+++  ..   
T Consensus        67 l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~-~i~g~~l~vvG~Iv~a-------tA~~--~~---  132 (599)
T PF06609_consen   67 LPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYF-FIIGSLLGVVGSIVCA-------TAQN--MN---  132 (599)
T ss_pred             HHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHhcchHH-HHHHHHHHHhHHHHhh-------cCCc--HH---
Confidence            34444456544 556677778889999999999999999999987 5678888888866442       1222  11   


Q ss_pred             HHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-hccCcccchhHHHHHH
Q 021040          127 ISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSV-STAKTHADLENQYRWI  205 (318)
Q Consensus       127 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~  205 (318)
                       .++.-..+.++|.+..... ...++|+.+ .|.|.....+...    ..++...+ ++.+.. +.      ...+|||.
T Consensus       133 -~~iag~~l~GvgaG~~~~~-~~~isEl~p-~k~R~~~~~~~~~----~~i~~~~~-~~~ia~~~~------~~~~WRw~  198 (599)
T PF06609_consen  133 -TFIAGMVLYGVGAGVQELA-ALAISELVP-NKWRGLGLAIASI----PFIITTWI-SPLIAQLFA------AHSGWRWI  198 (599)
T ss_pred             -HHHHHHHHHHHhhHHHHHH-HHHHHHhcc-cchhhhHhHHHHH----HHHhhhcc-cHHHHHHhc------cCCCcchH
Confidence             1222224567776555433 444788886 4677554433332    22222212 233332 22      13589999


Q ss_pred             HHHHHHHHHHHHHHHHhcccccc-cc---cc---c------------------------------CC-C-C---------
Q 021040          206 AYSSIFIGCCFVGIFLSRTEEPR-LK---MG---L------------------------------RG-N-S---------  237 (318)
Q Consensus       206 ~~i~~~~~~l~~~~~~~~~~e~~-~~---~~---~------------------------------~~-~-~---------  237 (318)
                      +++.+++..+..+..+++-+.++ ++   ++   +                              .+ + +         
T Consensus       199 ~~~~~i~~~i~~vl~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lv  278 (599)
T PF06609_consen  199 FYIFIIWSGIALVLIFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLV  278 (599)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHH
Confidence            98877766655544433332221 10   00   0                              00 0 0         


Q ss_pred             ----------------chHHH--HHHHHhc-HHHHHHHHHHHHHHHHHHHHHHHhHHhhhhccccccc---hhhHHHHHH
Q 021040          238 ----------------HARIS--WAYWFKK-ILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQS---AKALVPAII  295 (318)
Q Consensus       238 ----------------~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~---~~~~~~~~~  295 (318)
                                      ..++.  -.+++|+ |.+...++..++....++....++|......++-+..   ..+......
T Consensus       279 iG~~~Lv~F~~wE~~~~~~~Pl~P~~Lf~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~  358 (599)
T PF06609_consen  279 IGFVLLVAFVVWEWFGAPKDPLFPHRLFKDRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPV  358 (599)
T ss_pred             HHHHHHHHHHHhhhhccCCCCcCCHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhH
Confidence                            00111  1367777 5566666666666666677778889988887766542   233333333


Q ss_pred             HHHHHHHHHHHHHHHHhhh
Q 021040          296 YICSFIVSILLQVISLKLY  314 (318)
Q Consensus       296 ~v~~~i~~~~~~~i~~~~~  314 (318)
                      .++...++.+.+.+.+|+.
T Consensus       359 ~fg~~~g~~i~g~l~~~ir  377 (599)
T PF06609_consen  359 GFGSCAGAVILGLLFSKIR  377 (599)
T ss_pred             HHHHHHHHHHHHHHHHHcc
Confidence            3444555555555555443

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PTZ00207 hypothetical protein; Provisional

Probab=99.38  E-value=3e-10  Score=109.81  Aligned_cols=162  Identities=9%  Similarity=0.054  Sum_probs=104.5

Q ss_pred             HHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccchhH
Q 021040           45 TYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKV  124 (318)
Q Consensus        45 ~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~  124 (318)
                      .+.+....++|+|.++++++.+++.. ..+.+++.|+++||+|||+. +.++.++..++....+. +.. .... .+.+.
T Consensus        48 v~s~~L~~~lgls~~~l~~i~svg~~-~g~~~lp~G~L~Dr~G~R~v-llig~ll~~iG~ll~al-a~~-~~i~-~s~~~  122 (591)
T PTZ00207         48 LISGAMQARYNLTQRDLSTITTVGIA-VGYFLLPYSFIYDYLGPRPI-FVLSMTVFCLGTLLFAL-TFQ-EVIE-GSVVR  122 (591)
T ss_pred             HHHHHHHHHhCcCHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCcHHH-HHHHHHHHHHHHHHHHH-Hhc-cccc-CcHHH
Confidence            33344334459999999999887544 45678889999999999998 56788888888765542 110 0000 12222


Q ss_pred             HHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchhHHHHH
Q 021040          125 ETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRW  204 (318)
Q Consensus       125 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  204 (318)
                      +    .+..++.++|.+.........+.+.+  +++|+.+.++...+..+|.++.+.    +...+.       ..+|++
T Consensus       123 l----~l~r~l~G~G~~~~~~~~~~~i~~~F--p~~RG~a~Gi~~~~~gLGsaI~~~----l~~~l~-------~~~~~~  185 (591)
T PTZ00207        123 L----SVYNGLMTLGCMLFDLGAVVTVLSVF--PSNRGAVVAIMKTFTGLGSAILGS----IQLAFF-------SDNTSA  185 (591)
T ss_pred             H----HHHHHHHHHHHHHHHHHHHHHHHHhC--hhhhHHHHHHHHHHHHHHHHHHHH----HHHHHH-------HHhHHH
Confidence            2    22223456666555555555556665  368999999999888888765332    222111       135777


Q ss_pred             HHHHHHHHHHHHHHHHHhcccccc
Q 021040          205 IAYSSIFIGCCFVGIFLSRTEEPR  228 (318)
Q Consensus       205 ~~~i~~~~~~l~~~~~~~~~~e~~  228 (318)
                      .+++.+++++++.++...++++++
T Consensus       186 ~fl~l~vl~~vv~ll~~~~vr~p~  209 (591)
T PTZ00207        186 YFFFLMSFALVVGILAIVFMRLPP  209 (591)
T ss_pred             HHHHHHHHHHHHHHHHHhheeCCc
Confidence            778888888888887777777664

>TIGR00889 2A0110 nucleoside transporter

Probab=99.36  E-value=7.7e-11  Score=110.70  Aligned_cols=183  Identities=13%  Similarity=-0.004  Sum_probs=123.1

Q ss_pred             ccchHHHHHHHHHHHHHHHHHHHhCCC--------hhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHH
Q 021040           31 SGHMLNDITAACWFTYLLLFLTDIGLS--------PRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAV  102 (318)
Q Consensus        31 ~~~~~~~~~~~~~~~~l~~~l~~~gls--------~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i  102 (318)
                      +..+..+........+++.|+++.|.+        .++.|.+.++..+...+..++.|+++||+||||. +..+.+..++
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~-l~~~~~~~~v  293 (418)
T TIGR00889       215 FFSMLLGAPLQITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKV-MLLSLVAWAL  293 (418)
T ss_pred             HHHHHHHhHHHHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH-HHHHHHHHHH
Confidence            334444444445557788888877644        3677999999999999999999999999999988 5667777666


Q ss_pred             HHHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHH-HHHHHHHHHHHH
Q 021040          103 SFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRN-AFTMVANLSLYA  181 (318)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~-~~~~~g~~~~~~  181 (318)
                      ++.....       .......  .....+..++.+++.+...+....++.|..+ +++|+++.++.+ ....+|.++++.
T Consensus       294 ~~~l~~~-------~~~~~~~--~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p-~~~~g~~~g~~~~~~~~lg~~iGp~  363 (418)
T TIGR00889       294 RFGFFAY-------GDPEYFG--YALLFLSMIVYGCAFDFFNISGSVFVEKEVP-VHIRASAQGLFTLMCNGFGSLLGYI  363 (418)
T ss_pred             HHHHHHH-------cCcchhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            6543321       0111100  1111122244666666666666677788775 578999999986 556788888888


Q ss_pred             HHHHHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 021040          182 IAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPR  228 (318)
Q Consensus       182 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~  228 (318)
                      +++.+.+..+..    ...+|++.+.+.+++.+++.++..++.||+.
T Consensus       364 l~G~l~~~~g~~----~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~  406 (418)
T TIGR00889       364 LSGVMVEKMFAY----GTFDWQTMWLFFAGYIAILAVLFMIFFKYSH  406 (418)
T ss_pred             HHHHHHHHhccc----cCCchHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence            877777654310    0136888888888787778787778888763

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.35  E-value=1.7e-10  Score=111.28  Aligned_cols=145  Identities=14%  Similarity=0.059  Sum_probs=105.0

Q ss_pred             hHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHH
Q 021040           59 RGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNV  138 (318)
Q Consensus        59 ~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  138 (318)
                      ++.+++.+...++.++++++.|+++||+|||+. ++.+.++..++.+....       ++  +...+...+    ++.|+
T Consensus        89 ~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~-l~~~~~~~~iG~ii~~~-------a~--~~~~l~~GR----~l~G~  154 (513)
T KOG0254|consen   89 VRQGLLTSILNLGALVGSLLAGRLGDRIGRKKT-LLLAVVLFLIGAIIIAL-------AP--SWYQLIVGR----ILTGL  154 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-HHHHHHHHHHHHHHHHH-------hh--hHHHHHHHH----HHhcc
Confidence            456999999999999999999999999999998 56788888888765431       22  233333333    56778


Q ss_pred             HHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchhHHHHHHHHHHHHHHHHHHH
Q 021040          139 GWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVG  218 (318)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~  218 (318)
                      |.+........+++|+.| ++.|+...+..+....+|..++..++     ....    +...+||+.+.+..+.+++..+
T Consensus       155 g~G~~~~~~piy~sEiap-~~~RG~l~~~~~l~~~~Gi~~~~~~~-----~~~~----~~~~~Wr~~~~~~~i~~~~~~~  224 (513)
T KOG0254|consen  155 GVGGASVLAPVYISEIAP-AHIRGTLVSLYQLFITIGILLGYCIN-----YGTS----KVYAGWRIPLGLALIPAVILAL  224 (513)
T ss_pred             chhhhhhcchhhHhhcCC-hhhhHHHHHHHHHHHHHHHHHHHHHh-----hhhc----cCCccHHHHHHHHHHHHHHHHH
Confidence            888777777788899876 57999999998888887777653322     1110    0003688887777777777666


Q ss_pred             HHHhcccccc
Q 021040          219 IFLSRTEEPR  228 (318)
Q Consensus       219 ~~~~~~~e~~  228 (318)
                      . .++.||++
T Consensus       225 ~-~~~~pesp  233 (513)
T KOG0254|consen  225 G-MLFLPESP  233 (513)
T ss_pred             H-HHhCCCCh
Confidence            6 78888875

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.34  E-value=2e-10  Score=106.90  Aligned_cols=180  Identities=13%  Similarity=0.047  Sum_probs=115.1

Q ss_pred             hhhcccchHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHH
Q 021040           27 LYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSS  106 (318)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~  106 (318)
                      +...+..+.....+.....++++|+.+.|.+..+.|...++..+...+++++.|+++||+|||+. +..+..+.+++...
T Consensus       208 ~~l~~~~~~~~~~~~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~-~~~~~~l~~~~~~~  286 (393)
T PRK09705        208 WTLGVYFGLINGGYASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKL-LMLALVLQLVGFCG  286 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHH-HHHHHHHHHHHHHH
Confidence            33333333334445556678899998889999999999999999999999999999999999987 45566665555443


Q ss_pred             HhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 021040          107 VFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIV  186 (318)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l  186 (318)
                      +..  .+     .. ... . ..    .+.+++.+...+.......+..+++++|++..+..+....++..+++.+.+.+
T Consensus       287 ~~~--~~-----~~-~~~-~-~~----~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l  352 (393)
T PRK09705        287 FIW--LP-----LQ-LPV-L-WA----MVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVL  352 (393)
T ss_pred             HHH--cc-----ch-HHH-H-HH----HHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            321  11     11 111 1 11    12344444444334444445554456789999988888888887777777666


Q ss_pred             HHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Q 021040          187 FSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLK  230 (318)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~  230 (318)
                      .+..+         +|...+.+.++.+++...+...+.||++++
T Consensus       353 ~~~~g---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (393)
T PRK09705        353 RSISG---------NYLMDWAFHALCVVGLMIITLRFAPARFPQ  387 (393)
T ss_pred             HHHhC---------CchHHHHHHHHHHHHHHHHHHHhccccccc
Confidence            65432         355555555555555555556667776554

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=99.33  E-value=5.3e-10  Score=100.19  Aligned_cols=261  Identities=14%  Similarity=0.056  Sum_probs=136.2

Q ss_pred             CCCCchhhhhhcccchHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHH
Q 021040           19 QPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSV   98 (318)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~   98 (318)
                      .|..++=...|.+..    ...-+..+|+-..+++.|+++.|++.+...+....++..++.|.++||+||||..+. -.+
T Consensus        33 ~~Fqr~yl~vY~La~----~aDWLQGpY~Y~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~-~ci  107 (354)
T PF05631_consen   33 RRFQRKYLLVYLLAM----AADWLQGPYLYALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLL-FCI  107 (354)
T ss_pred             HHHHHHHHHHHHHHH----HHHHhhcchhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHH-HHH
Confidence            333333345555543    333445567655556679999999999999999999999999999999999999654 444


Q ss_pred             HHHHHHHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhc-cccccCccchhHHHHHHHHHHHHHH-
Q 021040           99 LVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMV-NCITLNSTSRVVLTSCRNAFTMVAN-  176 (318)
Q Consensus        99 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~R~~~~~~~~~~~~~g~-  176 (318)
                      +.+++.+..-        .+  +...+++.+    ++.|++.+....+..+++ .|-....-++.........++.+++ 
T Consensus       108 ly~~scl~k~--------~~--~~~~L~~GR----vlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~  173 (354)
T PF05631_consen  108 LYSLSCLTKH--------SS--NYPVLLLGR----VLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNG  173 (354)
T ss_pred             HHHHHHHHHh--------cc--ccHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhH
Confidence            4445433221        11  123233333    456677777666666554 3321111111222222211111222 


Q ss_pred             ---HHHHHHHHHHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhccccccccccc--CCCCchHHHHHHHHhcHH
Q 021040          177 ---LSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGL--RGNSHARISWAYWFKKIL  251 (318)
Q Consensus       177 ---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~~--~~~~~~~~~~~~~~~~~~  251 (318)
                         +.++.++-.+++..+        .+-..+|.....+..++.++....=+|...++.+  +..+..++.++.+++||+
T Consensus       174 ~vAI~aGv~a~~l~~~~~--------~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg~~~~~~~~~~~~~~a~~~i~~d~r  245 (354)
T PF05631_consen  174 VVAIGAGVVANVLADWFG--------FGPVAPFDAAIVLLAVAAVLILKTWPENYGDTSSSSSLSGSFREAWRAILSDPR  245 (354)
T ss_pred             HHHHHHhHHHHHHHHHhC--------CCCcchHHHHHHHHHHHHHHHHhcccccCCCcccccchHHHHHHHHHHHHcCch
Confidence               222222222222221        1113344333333333433333333454322111  112345667888899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHhhh-hccccccchhhHHHHHHHHHHHHHHHHHHHH
Q 021040          252 YYQVALVYMLTRLVVNVSQAYLAFYVI-NDLRMGQSAKALVPAIIYICSFIVSILLQVI  309 (318)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~yl~-~~~g~~~~~~~~~~~~~~v~~~i~~~~~~~i  309 (318)
                      .+.+..++.+.....+.+...-.+-++ +..+.   -.+.+-...+++.++|+-+.+++
T Consensus       246 il~LG~~qslFE~smy~FVflWtPaL~~~~~~~---P~GlIFssFM~a~MlGS~lf~~l  301 (354)
T PF05631_consen  246 ILLLGLIQSLFEGSMYLFVFLWTPALDPDDEEL---PLGLIFSSFMVAMMLGSSLFSRL  301 (354)
T ss_pred             hHHHHHHHHHHHHHHHHheeeeeceecCCCCCC---CchHHHHHHHHHHHHHHHHHHHH
Confidence            999999998888877765444333333 11111   12333233445555666555443

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=99.31  E-value=1.9e-10  Score=108.35  Aligned_cols=247  Identities=19%  Similarity=0.114  Sum_probs=150.6

Q ss_pred             HHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhh---cc-CchHHHHHHHHHHHHHHHHHhCCCCCCcccCc
Q 021040           45 TYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDR---FG-HFKIWHGAGSVLVAVSFSSVFGGCMPCRILST  119 (318)
Q Consensus        45 ~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr---~G-rr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~  119 (318)
                      .-..+|+++. |+++++......+..+-. ...|+.|.++|-   +| |||+|+.++.++.+++...+..  .|..   .
T Consensus        10 ~~~~~~l~~~l~ls~~~~~~~~~~~~lPw-~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~--~~~~---~   83 (433)
T PF03092_consen   10 LAIYPFLKDDLGLSPAQLQRLSSLASLPW-SIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLAL--LPAS---E   83 (433)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHhCch-HHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHh--cccc---c
Confidence            3355677774 999999998887777654 458999999994   56 8999999888777655443331  3311   1


Q ss_pred             cchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccC-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccch
Q 021040          120 STLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLN-STSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADL  198 (318)
Q Consensus       120 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~  198 (318)
                      .+.....    +...+..+|.+..++...+++.|...+ +++|+...+.......+|.+++..+.+++...         
T Consensus        84 ~s~~~~~----~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~---------  150 (433)
T PF03092_consen   84 SSAAIAV----VLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDS---------  150 (433)
T ss_pred             chhhhHH----HHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhc---------
Confidence            1122111    111346788888999999999888753 34467777777777788888887777776643         


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhcccccccccc-------cCCC-------CchHHHHHHHHhcHHHHHHHH-HHHHHH
Q 021040          199 ENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMG-------LRGN-------SHARISWAYWFKKILYYQVAL-VYMLTR  263 (318)
Q Consensus       199 ~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~-------~~~~-------~~~~~~~~~~~~~~~~~~~~~-~~~~~~  263 (318)
                       .++++.+.+.+++..+..+...+..+|++..++       +++.       ++.....++.+++|..+.... ..++..
T Consensus       151 -~~~~~~f~i~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~  229 (433)
T PF03092_consen  151 -FGPQGVFLISAALPLLMLIVALFLLEERKVRPADEVFSFGKEEVPCLFGSFREQLSELWRALQQRAIWQPILFFIFFFN  229 (433)
T ss_pred             -CCCeEEehHHHHHHHHHHHHHHHhhhhccccccchhhcccccccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence             234555666665555555555555555211110       0100       112234566777888777666 333332


Q ss_pred             HHHHHHHHHhHHhhhhccc---cccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 021040          264 LVVNVSQAYLAFYVINDLR---MGQSAKALVPAIIYICSFIVSILLQVISL  311 (318)
Q Consensus       264 ~~~~~~~~~~~~yl~~~~g---~~~~~~~~~~~~~~v~~~i~~~~~~~i~~  311 (318)
                      ........-.-.+..+..+   +++...+.+..+..++++++..+..+.-+
T Consensus       230 ~~~~~~~a~~fy~~~~~~~gp~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~  280 (433)
T PF03092_consen  230 LPPSISSASSFYFQTDALGGPHFSPSFYGTLSIVGSIASLLGILLYRKYFS  280 (433)
T ss_pred             hccCCCCccEEEEEeccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            2222111111223334445   77777777777778888888888877644

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=99.28  E-value=2.1e-10  Score=107.17  Aligned_cols=257  Identities=8%  Similarity=0.013  Sum_probs=154.1

Q ss_pred             CCCCchhhhhhcccchHHHHHHHHHHHHHHHHHHHh--CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccC-chHHHHH
Q 021040           19 QPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDI--GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGH-FKIWHGA   95 (318)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Gr-r~~~l~~   95 (318)
                      +|-+|+....-.+.++....-.++..+-.-+|++++  +.+.+..|++.++..++.++.+|++|+++.|.|+ ||| ++.
T Consensus        29 ~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~P-li~  107 (488)
T KOG2325|consen   29 RKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKP-LIV  107 (488)
T ss_pred             cCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccC-HHH
Confidence            445566665555556665555555555556899985  8889999999999999999999999999999986 888 567


Q ss_pred             HHHHHHHHHHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHH
Q 021040           96 GSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVA  175 (318)
Q Consensus        96 g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g  175 (318)
                      |.++.+++-++-.  ++.  ..+++..+..++.+    ++.|+|.+... ...+++++-+. .++|.++.+....+..+|
T Consensus       108 s~ii~~~g~llY~--~l~--~~~~~~~y~mL~~R----~l~Gvg~~n~a-~lR~Y~a~~s~-~~dR~rA~a~~~~~~vlg  177 (488)
T KOG2325|consen  108 SFLIAIIGNLLYL--ALA--YVPNGVKYLMLVAR----ILTGVGVGNFA-VLRAYIADAST-VEDRPRAFAATSGGFVLG  177 (488)
T ss_pred             HHHHHHHHHHHHH--HHH--hcccchHHHHHHHH----HHcCcCcccHH-HHHHHHHhccC-ccchHHHHHHhhhHHHHH
Confidence            7777777644221  011  11222233333333    45666655433 45778877664 478888888777777788


Q ss_pred             HHHHHHHHHHHHHhhccCcc----cchhHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCC------CCchHHHHHH
Q 021040          176 NLSLYAIAFIVFSVSTAKTH----ADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRG------NSHARISWAY  245 (318)
Q Consensus       176 ~~~~~~~~~~l~~~~~~~~~----~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~~~~------~~~~~~~~~~  245 (318)
                      .++|+.+. +.+..+++.|.    +...+.|....++.+++.++..++..++.+|.+.+..+++      ++...+..+.
T Consensus       178 ~ilGp~~q-~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~~~~~~~~~~~~~~~~~~~~~  256 (488)
T KOG2325|consen  178 IILGPTIQ-LAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRGIIDKKKRSVEEEKSDIEKVKK  256 (488)
T ss_pred             HHHhHHHH-HHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccCccccccccchhhccchhhhcc
Confidence            88887764 44554443321    1122445666677777777777777777888754432111      1111111111


Q ss_pred             HHhcHH-HHHHHHHHHHHHHHHHHHHHHhHHhhhhccccccch
Q 021040          246 WFKKIL-YYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSA  287 (318)
Q Consensus       246 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~  287 (318)
                      ..-+.. .+.+.+..+...+......+..+......++...++
T Consensus       257 ~~~d~~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~  299 (488)
T KOG2325|consen  257 PKLDWVAVLVCIFLRFVVNFIATTIETLSSALTMVMYGWTGSE  299 (488)
T ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHhccccch
Confidence            111111 222234444444454555666677777777776543

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.24  E-value=5.7e-10  Score=99.96  Aligned_cols=116  Identities=14%  Similarity=-0.007  Sum_probs=84.5

Q ss_pred             ChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccchhHHHHHHHHHHHHH
Q 021040           57 SPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIF  136 (318)
Q Consensus        57 s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  136 (318)
                      +....|.+-+.+++.+++++|.+|.+|||+|||.+ +.+|.+..++... +|.      .+  .+    +..+++-+++.
T Consensus        66 ~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpv-ll~c~~~va~s~l-l~~------~S--~~----F~afv~aR~l~  131 (451)
T KOG2615|consen   66 SVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPV-LLACLIGVALSYL-LWA------LS--RN----FAAFVLARFLG  131 (451)
T ss_pred             cchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHH-HHHHHHHHHHHHH-HHH------HH--HH----HHHHHHHHHhh
Confidence            45678999999999999999999999999999866 7788877777543 441      11  11    11222223344


Q ss_pred             HHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021040          137 NVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFS  188 (318)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~  188 (318)
                      |+..+ ......++++|+.++ |+|+...+.......+|.++|+++++-+..
T Consensus       132 Gi~kg-nl~v~rAiisdV~se-k~r~l~ms~v~~a~~lGfilGPmIGgyla~  181 (451)
T KOG2615|consen  132 GIFKG-NLSVIRAIISDVVSE-KYRPLGMSLVGTAFGLGFILGPMIGGYLAQ  181 (451)
T ss_pred             hhccC-chHHHHHHHHhhcCh-hhccceeeeeehhhhcchhhcchhhhHHHh
Confidence            44444 334567899999874 889999998888889999999998876654

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.23  E-value=6.3e-10  Score=105.96  Aligned_cols=177  Identities=8%  Similarity=-0.049  Sum_probs=98.7

Q ss_pred             ccchHHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhC
Q 021040           31 SGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFG  109 (318)
Q Consensus        31 ~~~~~~~~~~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~  109 (318)
                      +..+...........++|.|+++. |+|..+.++...+..+...++.++.|+++||+||||.. ..+.....++..... 
T Consensus       265 ~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~-~~~~~~~~~~~~~~~-  342 (467)
T PRK09556        265 FANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRAL-VACIALALIIFTLGV-  342 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchH-HHHHHHHHHHHHHHH-
Confidence            333333334444567889999885 99999999999999999999999999999999999874 333322222221111 


Q ss_pred             CCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 021040          110 GCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMV-ANLSLYAIAFIVFS  188 (318)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~-g~~~~~~~~~~l~~  188 (318)
                        .+    ...+.....+..    ++.+++.............|..| +++|+++.++.+...++ |..+++.+.+.+.+
T Consensus       343 --~~----~~~~~~~~~~~~----~~~G~~~~~~~~~~~~~~~~~~p-~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~  411 (467)
T PRK09556        343 --YQ----HATSEYMYLASL----FALGFLVFGPQLLIGVAAVGFVP-KKAIGVANGIKGTFAYLFGDSFAKVGLGMIAD  411 (467)
T ss_pred             --HH----hcCcHHHHHHHH----HHHHHHHhhHHHHHHHHHHhhcc-hhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhc
Confidence              00    011122111211    12332221111122244557765 57899999998877675 54555555444443


Q ss_pred             -hhccCc-ccchhHHHHHHHHHHHHHHHHHHHHH
Q 021040          189 -VSTAKT-HADLENQYRWIAYSSIFIGCCFVGIF  220 (318)
Q Consensus       189 -~~~~~~-~~~~~~~~~~~~~i~~~~~~l~~~~~  220 (318)
                       ...+.. .+....+|+..+.+.++..++..+..
T Consensus       412 ~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~  445 (467)
T PRK09556        412 PTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLM  445 (467)
T ss_pred             ccccccccccccccChHHHHHHHHHHHHHHHHHH
Confidence             000000 00002458888866655555544433

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.23  E-value=2e-09  Score=103.22  Aligned_cols=171  Identities=15%  Similarity=0.093  Sum_probs=95.0

Q ss_pred             HHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCc
Q 021040           37 DITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCR  115 (318)
Q Consensus        37 ~~~~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~  115 (318)
                      ....+....++|.|+++. |.+..+.++......+...++.++.|.++||+|||+.+ ..+.+...+....++.  .   
T Consensus       263 ~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~-~~~~~~~~~~~~~~~~--~---  336 (490)
T PRK10642        263 NVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFV-ILGSVALFVLAIPAFI--L---  336 (490)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH-HHHHHHHHHHHHHHHH--H---
Confidence            344555667889999775 99998888888888888999999999999999999874 4555433322221110  0   


Q ss_pred             ccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcc
Q 021040          116 ILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTH  195 (318)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~  195 (318)
                       ....+........    ++.+++.+..........+++.| ++.|++..+..+....+++.+++.+.+.+...      
T Consensus       337 -~~~~~~~~~~~~~----~~~g~~~~~~~g~~~~~~~~~~p-~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~------  404 (490)
T PRK10642        337 -INSNVIGLIFAGL----LMLAVILNCFTGVMASTLPAMFP-THIRYSALAAAFNISVLVAGLTPTLAAWLVES------  404 (490)
T ss_pred             -HhCCCHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence             0011112112222    22333333333344556677776 57899888763333333444444333333321      


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHhccccccc
Q 021040          196 ADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRL  229 (318)
Q Consensus       196 ~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~  229 (318)
                         ..+|+..++...+.++++.+. .++.||++.
T Consensus       405 ---~~~~~~~~~~~~~~~~i~~~~-~~~~pes~~  434 (490)
T PRK10642        405 ---TQNLMMPAYYLMVVAVIGLIT-GVTMKETAN  434 (490)
T ss_pred             ---hCCchHHHHHHHHHHHHHHHH-HHHhccccC
Confidence               113444444444444444333 345688754

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.19  E-value=5.1e-10  Score=102.41  Aligned_cols=151  Identities=16%  Similarity=0.077  Sum_probs=102.0

Q ss_pred             HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccc
Q 021040           42 CWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTST  121 (318)
Q Consensus        42 ~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~  121 (318)
                      ....+.++|.++.|.+..+.+.+.+...+...+++++.|+++||+|||+. +..+.+..+++...+..  .     ++..
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~-~~~~~~~~~~~~~~~~~--~-----~~~~  294 (377)
T TIGR00890       223 LLIGLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKT-MSIVFGISAVGMAAMLF--I-----PMLN  294 (377)
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hhHHHHHHHHHHHHHHH--c-----ccch
Confidence            34456677777779999999999999999999999999999999999987 45666666666544331  1     1111


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchhHH
Q 021040          122 LKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQ  201 (318)
Q Consensus       122 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~  201 (318)
                      ... .   .....+.+++.+.......++..|..+ +++|++..+..+....+|..+++.+.+.+.+          ..+
T Consensus       295 ~~~-~---~~~~~~~g~~~g~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~----------~~g  359 (377)
T TIGR00890       295 DVL-F---LATVALVFFTWGGTISLFPSLVSDIFG-PANSAANYGFLYTAKAVAGIFGGLIASHALT----------EIG  359 (377)
T ss_pred             hHH-H---HHHHHHHHHHhccchhccHHHHHHHhh-hhhhhhHhHHHHHHHHHHHHHHHHHHHHHHh----------hhc
Confidence            111 1   111123445555544455667778775 5789999999988888888877766655543          246


Q ss_pred             HHHHHHHHHHHHHH
Q 021040          202 YRWIAYSSIFIGCC  215 (318)
Q Consensus       202 ~~~~~~i~~~~~~l  215 (318)
                      |++.+.+.+++.++
T Consensus       360 ~~~~f~~~~~~~~~  373 (377)
T TIGR00890       360 FEYTFIVTGAFALT  373 (377)
T ss_pred             hhhHHHHHHHHHHH
Confidence            77777666655544

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.19  E-value=1.5e-09  Score=101.22  Aligned_cols=134  Identities=13%  Similarity=0.077  Sum_probs=92.5

Q ss_pred             HHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccC
Q 021040           39 TAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILS  118 (318)
Q Consensus        39 ~~~~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~  118 (318)
                      .......++|.|+++.|.+..+.+.+.....+...++.++.|+++||+|||+.. ..+.+...++...+..       .+
T Consensus       235 ~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~-~~~~~~~~~~~~~~~~-------~~  306 (406)
T PRK11551        235 VLYFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVV-LLIYAGILASLAALAA-------AP  306 (406)
T ss_pred             HHHHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHh-------cC
Confidence            333455677888888899999999999999999999999999999999998874 4444444444332221       11


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021040          119 TSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVF  187 (318)
Q Consensus       119 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~  187 (318)
                        +.....    +..++.+++.+.......++..|..+ +++|++..++.+....+|..+++.+.+.+.
T Consensus       307 --~~~~~~----~~~~~~g~~~~~~~~~~~~~~~~~~p-~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~  368 (406)
T PRK11551        307 --SFAGML----LAGFAAGLFVVGGQSVLYALAPLFYP-TQVRGTGVGAAVAVGRLGSMAGPLLAGQLL  368 (406)
T ss_pred             --cHHHHH----HHHHHHHHHHHhHHHHHHHHHHHHcc-hhhhhhhhhHHHHhhhHHHHHHhhhHhhhh
Confidence              122111    11233445554455556677788875 578999999998888888887776665554

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.17  E-value=8.8e-09  Score=95.88  Aligned_cols=160  Identities=11%  Similarity=0.056  Sum_probs=98.5

Q ss_pred             HHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccC
Q 021040           40 AACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILS  118 (318)
Q Consensus        40 ~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~  118 (318)
                      ......++|.|+++. |++..+.|.+.+...+...++.++.|+++||+||||. +..+.+...+......       ..+
T Consensus       232 ~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~-~~~~~~~~~~~~~~~~-------~~~  303 (393)
T PRK15011        232 NSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFL-MRVAAVAGVCFYAGML-------MAH  303 (393)
T ss_pred             HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHH-HHHHHHHHHHHHHHHH-------HHh
Confidence            334456788888775 9999999999888888888899999999999999987 4455544443332221       111


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccch
Q 021040          119 TSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADL  198 (318)
Q Consensus       119 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~  198 (318)
                        +........    .+.+++.+...........|..|  ++|+++.+..+...++|..+++.+++.+.+.         
T Consensus       304 --~~~~~l~~~----~l~~~~~g~~~~~~~~~~~~~~p--~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~---------  366 (393)
T PRK15011        304 --SPAILLGLQ----LLNAIYIGILGGIGMLYFQDLMP--GQAGSATTLYTNTSRVGWIIAGSLAGIVAEI---------  366 (393)
T ss_pred             --hHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhCC--CCcchHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence              122111111    12222333322233345566654  4688888888777888888887776665532         


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 021040          199 ENQYRWIAYSSIFIGCCFVGIFLSRTEE  226 (318)
Q Consensus       199 ~~~~~~~~~i~~~~~~l~~~~~~~~~~e  226 (318)
                       .+|++.+.+.+++.++.. +..++.||
T Consensus       367 -~g~~~~~~~~~~~~~~~~-~~~~~~~~  392 (393)
T PRK15011        367 -WNYHAVFWFALVMIIATL-FCLLRIKD  392 (393)
T ss_pred             -hhhHHHHHHHHHHHHHHH-HHHHhhcC
Confidence             367777766555555443 33445555

>TIGR00897 2A0118 polyol permease family

Probab=99.16  E-value=4.5e-09  Score=98.14  Aligned_cols=168  Identities=13%  Similarity=0.117  Sum_probs=103.2

Q ss_pred             ccchHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCC
Q 021040           31 SGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGG  110 (318)
Q Consensus        31 ~~~~~~~~~~~~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~  110 (318)
                      +..+..........+++|.|+++.|.+..+.+.+.....+...++.+..|+++||+||||+....+.+..+++...+.. 
T Consensus       229 ~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~-  307 (402)
T TIGR00897       229 MVRIINTIGLFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYY-  307 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH-
Confidence            3334444445556678888887779999999999999999999999999999999999887433333333332221110 


Q ss_pred             CCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021040          111 CMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVS  190 (318)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~  190 (318)
                       .+.. .. .+.....    +...+.+++.+.. .+..+...+..  +++|+++.++.+....+|+.+++.+.+.+.+. 
T Consensus       308 -~~~~-~~-~~~~~~~----~~~~~~G~~~~~~-~~~~~~~~~~~--~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~-  376 (402)
T TIGR00897       308 -IPQH-FG-HSFAVAL----IIAIALGIFLAGY-VPLAAVFPTLA--PKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGF-  376 (402)
T ss_pred             -HHHc-cC-CcHHHHH----HHHHHHHHHHHHH-HHHHHHHHhhC--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-
Confidence             1100 01 1122111    1123345444443 23444555643  45899999999999999988887777666643 


Q ss_pred             ccCcccchhHHHHHHHHHHHHHHHHHHHH
Q 021040          191 TAKTHADLENQYRWIAYSSIFIGCCFVGI  219 (318)
Q Consensus       191 ~~~~~~~~~~~~~~~~~i~~~~~~l~~~~  219 (318)
                               .++...+++.+++.++..++
T Consensus       377 ---------~g~~~~~~~~a~~~~i~~~~  396 (402)
T TIGR00897       377 ---------FGAIGVVWIFAALYVVSAFL  396 (402)
T ss_pred             ---------cchHHHHHHHHHHHHHHHHH
Confidence                     34566666666555444433

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.16  E-value=3.7e-09  Score=96.73  Aligned_cols=172  Identities=16%  Similarity=0.097  Sum_probs=112.1

Q ss_pred             chhhhhhcccchHHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHH
Q 021040           23 RWSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVA  101 (318)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~  101 (318)
                      +++.+..-+..+.........++|+.|+++|+ |++.+.+++++.++.+...+++.+.|+++|| +.|+. +.....+.+
T Consensus       210 ~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~-l~~~~~l~a  287 (394)
T COG2814         210 RPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRA-LIAALLLLA  287 (394)
T ss_pred             CchHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhH-HHHHHHHHH
Confidence            33333333333333444556779999999998 9999999999999999999999999999999 87777 455555555


Q ss_pred             HHHHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHH
Q 021040          102 VSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYA  181 (318)
Q Consensus       102 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~  181 (318)
                      +....+..       .++ +.......    ..++++..+..........++.  .++.++.+.++.....|+|..+|+.
T Consensus       288 ~~~l~l~~-------~~~-~~~~~~~~----~~~wg~a~~~~~~~~~~~~a~~--~p~~~~~a~sl~~aa~nlgia~GA~  353 (394)
T COG2814         288 LALLALTF-------TGA-SPALALAL----LFLWGFAFSPALQGLQTRLARL--APDAADLAGSLNVAAFNLGIALGAA  353 (394)
T ss_pred             HHHHHHHH-------hcc-hHHHHHHH----HHHHHHHhhhhhhHHHHHhccc--CCCchHHHHHHHHHHHHHHHHHHHH
Confidence            55543321       111 12211111    1234444444444444444442  2467889999999999999999999


Q ss_pred             HHHHHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHH
Q 021040          182 IAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIF  220 (318)
Q Consensus       182 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~  220 (318)
                      +++.+++..          ++....++.+++..+...+.
T Consensus       354 lGG~v~~~~----------g~~~~~~~~a~l~~~a~~~~  382 (394)
T COG2814         354 LGGLVLDAL----------GYAATGWVGAALLLLALLLA  382 (394)
T ss_pred             HHHHHHHhh----------chHHHHHHHHHHHHHHHHHH
Confidence            998888652          44545555555555444444

>TIGR01272 gluP glucose/galactose transporter

Probab=99.16  E-value=6e-09  Score=93.95  Aligned_cols=181  Identities=10%  Similarity=-0.046  Sum_probs=110.5

Q ss_pred             HHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccc-------chhHHH
Q 021040          130 CVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHA-------DLENQY  202 (318)
Q Consensus       130 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~-------~~~~~~  202 (318)
                      ++..++.+.|.+..++..+++++++.+ +|++++..++.+.+..+|.++++.+++.+...-.. +..       .....|
T Consensus        14 l~~~f~~g~G~~~lq~~~n~~v~~~~~-~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~-~~~~~~~~~~~~~~~~   91 (310)
T TIGR01272        14 LGALFVLASGLTILQVAANPYVSILGP-IETAASRLALTQAFNKLGTTVAPLFGGSLILSGAG-DLSMQVATANAEAAKV   91 (310)
T ss_pred             HHHHHHHHhhHHHHHhhHHHHHHHHCC-cchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCc-chhhhhhhhhHHHHHH
Confidence            333356788899999999999999875 46788888999999999999888877665532100 000       012468


Q ss_pred             HHHHHHHHHHHHHHHHHH-HhcccccccccccCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhc-
Q 021040          203 RWIAYSSIFIGCCFVGIF-LSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVIND-  280 (318)
Q Consensus       203 ~~~~~i~~~~~~l~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~-  280 (318)
                      ++.+++.+++..+..++. +...||.+++++++...+.....++++|+|.++...+..++..........|++.|+.+. 
T Consensus        92 ~~~yl~ia~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~  171 (310)
T TIGR01272        92 HTPYLLLAGALAVLAIIFAFLPLPELQEADVARVSSGDTTQKTSAFQFTHLVLGALGIFVYVGAEVSAGSFLVNFLSDPH  171 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccCCCCCcccccccccccccchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            888876665544444333 333454322221111111111234577888888777777776667888999999999865 


Q ss_pred             -cccccchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 021040          281 -LRMGQSAKALVPAIIYICSFIVSILLQVISLK  312 (318)
Q Consensus       281 -~g~~~~~~~~~~~~~~v~~~i~~~~~~~i~~~  312 (318)
                       +|+++...+........+..++.++.+++.+|
T Consensus       172 ~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r  204 (310)
T TIGR01272       172 ALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPM  204 (310)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             57776554444444444444444444444444

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.15  E-value=7.4e-09  Score=95.16  Aligned_cols=160  Identities=11%  Similarity=0.027  Sum_probs=100.4

Q ss_pred             HHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccC
Q 021040           40 AACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILS  118 (318)
Q Consensus        40 ~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~  118 (318)
                      ......+++.|+++. |.++.+.|++.........++.++.|+++||+||||. +..+.+...+.......       . 
T Consensus       215 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~-~~~~~~~~~~~~~~~~~-------~-  285 (375)
T TIGR00899       215 NILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRL-MLLAALAGVAFYTGLAA-------D-  285 (375)
T ss_pred             HHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhH-HHHHHHHHHHHHHHHHH-------H-
Confidence            334455678888765 9999999999888888888889999999999999987 44555444443322210       1 


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccch
Q 021040          119 TSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADL  198 (318)
Q Consensus       119 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~  198 (318)
                       .+.+...    +...+.+++.+...+....+..|..+  ++|+++.+..+...++|..+++.+.+.+.+.         
T Consensus       286 -~~~~~~~----~~~~~~g~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~---------  349 (375)
T TIGR00899       286 -NSLWALL----MLQLLNAIFIGILAGIGMLYFQDLMP--GRAGAATTLYTNTGRVGWIIAGSVGGILAER---------  349 (375)
T ss_pred             -HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhCc--chhhHHHHHHHHHHHHHHHHHHHHHHHHHHh---------
Confidence             1122111    11223455555544455566677654  4566888888888888888777766655532         


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 021040          199 ENQYRWIAYSSIFIGCCFVGIFLSRTEE  226 (318)
Q Consensus       199 ~~~~~~~~~i~~~~~~l~~~~~~~~~~e  226 (318)
                       .+|++.+.+.+++.++..+.. ..+||
T Consensus       350 -~g~~~~~~~~~~~~~~~~~~~-~~~~~  375 (375)
T TIGR00899       350 -WSYHAVYWFAIVMLIVALFCL-LLIKD  375 (375)
T ss_pred             -ccchhHHHHHHHHHHHHHHHH-heecC
Confidence             356777766665555444433 44554

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.14  E-value=5.6e-09  Score=100.82  Aligned_cols=146  Identities=15%  Similarity=0.090  Sum_probs=101.9

Q ss_pred             hCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccchhHHHHHHHHHH
Q 021040           54 IGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFA  133 (318)
Q Consensus        54 ~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (318)
                      +..+.....+..+++.++..++..++|.++||+|||+++ +.+.++.+++-....       ++++  ..    .+.+.+
T Consensus       113 ~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~-~~~~~~~~i~~~~~a-------~a~~--~~----~~~~~R  178 (521)
T KOG0255|consen  113 VCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVL-LVSLLLFIIFGILTA-------FAPN--YW----MFLIFR  178 (521)
T ss_pred             eeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHH-HHHHHHHHHHHHHHH-------HhCc--HH----HHHHHH
Confidence            378889999999999999999999999999999999985 567666666543322       2222  22    234445


Q ss_pred             HHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchhHHHHHHHHHHHHHH
Q 021040          134 AIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIG  213 (318)
Q Consensus       134 ~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~  213 (318)
                      ++.|++.+........+..|+.. +++|+.+..+ ......++.+++    +..+.+.        .+|||..++..+++
T Consensus       179 fl~G~~~~~~~~~~~~~~~E~~~-~~~R~~~~~~-~~~~~~~~~~~~----~~~a~~~--------~~Wr~~~~~~~~~~  244 (521)
T KOG0255|consen  179 FLSGFFGSGPLTVGFGLVAEIVS-PKQRGLALTL-GGFFFVGGLMLP----AGAAYIT--------RDWRWLFWIISIPS  244 (521)
T ss_pred             HHHHhhccchhHHhHhhheeecC-cchhhHHHHH-HHHHHHHHHHHH----HHHHHHH--------hhHHHHHHHHHHHH
Confidence            66777777777777788899985 5899988887 444444444332    3333322        48999998888777


Q ss_pred             HHHHHHHHhcccccc
Q 021040          214 CCFVGIFLSRTEEPR  228 (318)
Q Consensus       214 ~l~~~~~~~~~~e~~  228 (318)
                      .+..+. .+..+|++
T Consensus       245 ~~~~~~-~~l~~Es~  258 (521)
T KOG0255|consen  245 GLFLLL-WFLPPESP  258 (521)
T ss_pred             HHHHHH-HHccCcCh
Confidence            766555 45556764

>PRK10504 putative transporter; Provisional

Probab=99.14  E-value=9.3e-09  Score=97.88  Aligned_cols=146  Identities=11%  Similarity=-0.023  Sum_probs=99.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCC
Q 021040           34 MLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCM  112 (318)
Q Consensus        34 ~~~~~~~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~  112 (318)
                      +...........+.|.|+++. |.++.+.++......+...+..++.|+++||+|||+. +..+....++....+..  .
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~-~~~~~~~~~~~~~~~~~--~  347 (471)
T PRK10504        271 FAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRV-LVATTLGLALVSLLFML--V  347 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHH-HHHHHHHHHHHHHHHHh--c
Confidence            333444444445567777765 9999999999998889888999999999999999988 45666666655443321  1


Q ss_pred             CCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 021040          113 PCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVST  191 (318)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~  191 (318)
                      +    ..........    ...+.+++.+....+.+.+..+..+ +++|+...+..+....+|..+++.+++.+++..+
T Consensus       348 ~----~~~~~~~~~~----~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~g  417 (471)
T PRK10504        348 A----LLGWYYLLPF----VLFLQGMVNSTRFSSMNTLTLKDLP-DNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLFG  417 (471)
T ss_pred             c----ccccHHHHHH----HHHHHHHHHHHHHHHHHHHHHHcCC-HHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            1    1111111111    1123445555555566667777665 4788999999999999999998888887776544

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.13  E-value=7.5e-10  Score=86.46  Aligned_cols=136  Identities=15%  Similarity=0.024  Sum_probs=90.5

Q ss_pred             HHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHH
Q 021040           66 LSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQV  145 (318)
Q Consensus        66 ~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  145 (318)
                      +...+...+.+++.|+++||+||||.+ ..+.....++......       .+  +.+...    +...+.+++.+...+
T Consensus         5 ~~~~~~~~~~~~~~g~~~d~~g~~~~~-~~~~~~~~~~~~~~~~-------~~--~~~~~~----~~~~~~g~~~~~~~~   70 (141)
T TIGR00880         5 AGYALGQLIYSPLSGLLTDRFGRKPVL-LVGLFIFVLSTAMFAL-------SS--NITVLI----IARFLQGFGAAFALV   70 (141)
T ss_pred             EeehhHHHHHHhhHHHHHhhcchhHHH-HHHHHHHHHHHHHHHH-------hc--cHHHHH----HHHHHHHHHHHHHHH
Confidence            345677788999999999999999984 5566666665443321       11  122111    122346666666666


Q ss_pred             hHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhccc
Q 021040          146 AHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTE  225 (318)
Q Consensus       146 ~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~  225 (318)
                      ...++..|..+ +++|++..+..+....+|..+++.+.+.+.+          ..+|++.+.+.+++..+..+...+..|
T Consensus        71 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (141)
T TIGR00880        71 AGAALIADIYP-PEERGVALGLMSAGIALGPLLGPPLGGVLAQ----------FLGWRAPFLFLAILALAAFILLAFLLP  139 (141)
T ss_pred             hHHHHHHHHCC-hhhhhHHHHHHHHhHHHHHHHhHHhHHHHhc----------ccchHHHHHHHHHHHHHHHHHHhhcCC
Confidence            67778888875 5789999999888888888877666544432          246777877777666666666655555


Q ss_pred             c
Q 021040          226 E  226 (318)
Q Consensus       226 e  226 (318)
                      |
T Consensus       140 ~  140 (141)
T TIGR00880       140 E  140 (141)
T ss_pred             C
Confidence            5

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.13  E-value=5.9e-09  Score=98.88  Aligned_cols=171  Identities=9%  Similarity=-0.048  Sum_probs=96.4

Q ss_pred             hcccchHHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhc--cCchHHHHHHHHHHHHHHH
Q 021040           29 YGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRF--GHFKIWHGAGSVLVAVSFS  105 (318)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~--Grr~~~l~~g~~~~~i~~~  105 (318)
                      ..+..+...........++|.|+++. |.+..+.+.+..+..+...++.++.|+++||+  |||+........+..++..
T Consensus       258 ~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~  337 (452)
T PRK11273        258 IAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATI  337 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHH
Confidence            33443333444455667899999986 99999999999999999999999999999999  4554322222222233322


Q ss_pred             HHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHH-HHHHHH
Q 021040          106 SVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLS-LYAIAF  184 (318)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~-~~~~~~  184 (318)
                      ..+.  .+     ..+.......  .  .+.+.+.........+...|..| +++|+++.++.+...++|+.+ ++.+.+
T Consensus       338 ~~~~--~~-----~~~~~~~~~~--~--~~~g~~~~~~~~~~~~~~~~~~p-~~~~g~~~g~~~~~~~~g~~~~g~~v~g  405 (452)
T PRK11273        338 VYWL--NP-----AGNPTVDMAC--M--IVIGFLIYGPVMLIGLHALELAP-KKAAGTAAGFTGLFGYLGGSVAASAIVG  405 (452)
T ss_pred             HHHH--hc-----ccChHHHHHH--H--HHHHHHHHhHHHHHHHHHHHHcC-hhhhhhHHHHHHHHHHHHHHHhhhhhHH
Confidence            2221  11     1111111111  1  11222211111122234456664 578999999888777776543 454444


Q ss_pred             HHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHH
Q 021040          185 IVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFL  221 (318)
Q Consensus       185 ~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~  221 (318)
                      .+.+          ..+|++.+.+.++.++++.+...
T Consensus       406 ~l~~----------~~g~~~~f~~~~~~~~~~~~~~~  432 (452)
T PRK11273        406 YTVD----------FFGWDGGFMVMIGGSILAVILLI  432 (452)
T ss_pred             HHHH----------HhcchHHHHHHHHHHHHHHHHHH
Confidence            4443          24577777666666555554443

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.13  E-value=1.4e-08  Score=94.51  Aligned_cols=156  Identities=17%  Similarity=0.052  Sum_probs=111.3

Q ss_pred             CCCCchhhhhhccc-chHHHHHHHHHHHHHHHHHHHh-C----CChhHHHHHHHHHHHHHHHHhhhhHHHhhh-ccCchH
Q 021040           19 QPVGRWSVLYYGSG-HMLNDITAACWFTYLLLFLTDI-G----LSPRGAAAVMLSGQIADGFATIFIGELIDR-FGHFKI   91 (318)
Q Consensus        19 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~-g----ls~~~~g~i~~~~~i~~~i~~p~~G~lsDr-~Grr~~   91 (318)
                      +..+-++.+.+.+. .+-.-..++.....+..|++.. +    +|++++--+...+.-.--++..++|+++|| +|+||+
T Consensus        15 ~~f~~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~t   94 (498)
T COG3104          15 KFFGQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRT   94 (498)
T ss_pred             ccCCCCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHH
Confidence            33333444444443 4667777888888888888764 6    999999999999988888999999999999 899999


Q ss_pred             HHHHHHHHHHHHHHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccC-ccchhHHHHHHHH
Q 021040           92 WHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLN-STSRVVLTSCRNA  170 (318)
Q Consensus        92 ~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~R~~~~~~~~~  170 (318)
                       +..|.++.+++...+..   +    ...+...+++..    .+..+|.+..-+...+++.|..++ +.+|....+..+.
T Consensus        95 -I~lGail~~iGh~~L~~---~----~~~~~~gl~i~L----~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~  162 (498)
T COG3104          95 -IVLGAILMAIGHLVLAI---S----SVSGPGGLYIGL----ALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYM  162 (498)
T ss_pred             -HHHHHHHHHHHHHHHhc---c----ccccccHHHHHH----HHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEE
Confidence             67899999999887753   1    001112223322    224478888877788888888764 3446777888888


Q ss_pred             HHHHHHHHHHHHHHHH
Q 021040          171 FTMVANLSLYAIAFIV  186 (318)
Q Consensus       171 ~~~~g~~~~~~~~~~l  186 (318)
                      +.|+|+++++.+++.+
T Consensus       163 ~iNiGsl~~p~i~~~~  178 (498)
T COG3104         163 GINIGSLIAPIITGLL  178 (498)
T ss_pred             EeehHHHHHHHHHHHH
Confidence            8899988776665443

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.12  E-value=8.2e-09  Score=95.61  Aligned_cols=154  Identities=13%  Similarity=0.071  Sum_probs=99.4

Q ss_pred             HHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccC
Q 021040           39 TAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILS  118 (318)
Q Consensus        39 ~~~~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~  118 (318)
                      .......++|.|+++.|.+..+.|...+...+...+++++.|+++||+|||+. +..+....+++.....         .
T Consensus       215 ~~~~~~~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~-l~~~~~~~~~~~~~~~---------~  284 (381)
T PRK03633        215 VLGSLYGLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLV-LRVQVFVVILGSIAML---------S  284 (381)
T ss_pred             HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHH-HHHHHHHHHHHHHHHh---------h
Confidence            34445577888888889999999999999999999999999999999999887 5556666555543221         0


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccch
Q 021040          119 TSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADL  198 (318)
Q Consensus       119 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~  198 (318)
                      .  .. .....    .+.+.+.....+...+...|..+ +++++...+..+...++|.++++.+++.+.+.         
T Consensus       285 ~--~~-~~~~~----~l~g~~~~~~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~---------  347 (381)
T PRK03633        285 Q--AA-MAPAL----FILGAAGFTLYPVAMAWACEKVE-HHELVAMNQALLLSYTVGSLLGPSFTAMLMQN---------  347 (381)
T ss_pred             h--HH-HHHHH----HHHHHHHHhHHHHHHHHHHccCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence            0  01 11111    12333333334445566666654 34556666666667778888877776666543         


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHH
Q 021040          199 ENQYRWIAYSSIFIGCCFVGIF  220 (318)
Q Consensus       199 ~~~~~~~~~i~~~~~~l~~~~~  220 (318)
                       .++++.+.+.+.+.++..+..
T Consensus       348 -~g~~~~f~~~~~~~l~~~~~~  368 (381)
T PRK03633        348 -YSDNLLFIMIASVSFIYLLML  368 (381)
T ss_pred             -hCccHHHHHHHHHHHHHHHHH
Confidence             356777777666665444333

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.12  E-value=5.9e-09  Score=98.37  Aligned_cols=173  Identities=10%  Similarity=-0.002  Sum_probs=101.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhc--cCchHHHHHHHHHHHHHHHHHhCC
Q 021040           34 MLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRF--GHFKIWHGAGSVLVAVSFSSVFGG  110 (318)
Q Consensus        34 ~~~~~~~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~--Grr~~~l~~g~~~~~i~~~~~~~~  110 (318)
                      +..........+++|.|+++. |++..+.+...+...+...++.++.|+++||+  ++|+.......+...+....++. 
T Consensus       253 ~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~-  331 (434)
T PRK11663        253 VLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWL-  331 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHH-
Confidence            333344445567889999775 99999999999999999999999999999998  33333211111111112111111 


Q ss_pred             CCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021040          111 CMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVS  190 (318)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~  190 (318)
                       .+     ..+........    ...+++.............|..+ +++|++..++.+....+|..+++.+.+.+.+. 
T Consensus       332 -~~-----~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~-  399 (434)
T PRK11663        332 -MP-----FASYVMQAACF----FTIGFFVFGPQMLIGMAAAECSH-KEAAGAATGFVGLFAYLGAALSGYPLAKVLEI-  399 (434)
T ss_pred             -cc-----cccHHHHHHHH----HHHHHHHhhHHHHHHHHHHhccc-HhhHHhHHHHHHHHHHHHHHHhcccHHHHHHh-
Confidence             11     11111111111    11222111111122234456654 57899999999999999988877666555532 


Q ss_pred             ccCcccchhHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 021040          191 TAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPR  228 (318)
Q Consensus       191 ~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~  228 (318)
                               .+|+..+.+.++++++.++...+..|+++
T Consensus       400 ---------~g~~~~f~~~~~~~~~~~~~~~~~~~~~~  428 (434)
T PRK11663        400 ---------WHWTGFFVVISIAAGISALLLLPFLNAQA  428 (434)
T ss_pred             ---------cccHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence                     45777777777776666665555555543

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.12  E-value=1.1e-08  Score=93.72  Aligned_cols=270  Identities=12%  Similarity=0.061  Sum_probs=148.1

Q ss_pred             hhhcccchHHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHH
Q 021040           27 LYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFS  105 (318)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~  105 (318)
                      +.+++-++.|.+.|.-+ .-+.-+.++. | +...+-+...++++........+-|+.||+|=|.+ .+.+..+..++-+
T Consensus        48 l~~slL~~SN~~qWI~y-a~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a-~llgt~ln~iGa~  124 (480)
T KOG2563|consen   48 LAFSLLNFSNGMQWIQY-APINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTA-LLLGTVLNGIGAW  124 (480)
T ss_pred             HHHHHHHhcCcchheee-hhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHH-HHHHHHHHHHHHH
Confidence            45555555554443221 2233444444 6 77777788899999999999999999999999888 5678777777754


Q ss_pred             HHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHH---hHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHH
Q 021040          106 SVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQV---AHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAI  182 (318)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~  182 (318)
                      .=.....|  +.++  ..+    +.+. ..-+...+..++   ...+.+++...+++||+.+......++.+|.+++..+
T Consensus       125 Ir~iss~p--~v~~--~f~----~~l~-~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~ll  195 (480)
T KOG2563|consen  125 IRLISSLP--FVPP--LFR----RPLT-HTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLL  195 (480)
T ss_pred             HhhhccCc--cccc--cch----hhhh-HHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhc
Confidence            32110111  0011  111    1110 111222222222   1223444544557899999999988999999888777


Q ss_pred             HHHHHHhhccCcccchhHHHHH--HHHHHHHHHHHHHHHHHhcccccccccc-----cCCCCchHHHHHHHHhcHHHHHH
Q 021040          183 AFIVFSVSTAKTHADLENQYRW--IAYSSIFIGCCFVGIFLSRTEEPRLKMG-----LRGNSHARISWAYWFKKILYYQV  255 (318)
Q Consensus       183 ~~~l~~~~~~~~~~~~~~~~~~--~~~i~~~~~~l~~~~~~~~~~e~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~  255 (318)
                      .+.++..-.    .+....|.-  .++..++++.+...+..+.-+|+++.+.     ++++.+..++.++.+||++|..+
T Consensus       196 ppilV~~~~----~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~s~~~~~~~~f~~si~~~~~n~~F~il  271 (480)
T KOG2563|consen  196 PPILVPSSK----DSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPSASQAALQDASFPKSIKSCFKNRQFIIL  271 (480)
T ss_pred             cceecCCCC----CcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHhhhhcCcHHHHHHHHHcCccHHHH
Confidence            544543210    011233332  3343444444333333333344322211     12234588899999999999998


Q ss_pred             HHHHHHHHHHHHHHHHHhHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 021040          256 ALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQVISLKL  313 (318)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~v~~~i~~~~~~~i~~~~  313 (318)
                      ++++-+....++...+.+-.-+... |.++...+.......+++.+++.+.+.+.||.
T Consensus       272 ~~~ygi~~g~F~~l~~~l~~~l~~s-gY~~~~aG~ig~l~iv~Gmlga~~~gii~Dkt  328 (480)
T KOG2563|consen  272 AICYGIGLGLFNSLSTLLNLALCPS-GYEGVFAGYIGALMIVAGMLGALASGIIADKT  328 (480)
T ss_pred             HHHHhhhHHHHHHHHHHhhhccccc-cCCccccchhHHHHHHHHHHHHHHHHhhhhhh
Confidence            8888777766665555443333332 34433334444444455555555555555544

>PRK03699 putative transporter; Provisional

Probab=99.12  E-value=8.2e-09  Score=96.07  Aligned_cols=163  Identities=7%  Similarity=-0.030  Sum_probs=97.4

Q ss_pred             cccchHHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHh
Q 021040           30 GSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVF  108 (318)
Q Consensus        30 ~~~~~~~~~~~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~  108 (318)
                      .+..+...........++|.|++|. |+|+.+.+.+.+...+...++.++.|+++||+||||..+ ......++......
T Consensus       211 ~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~-~~~~~~~~~~~~~~  289 (394)
T PRK03699        211 AIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILT-VLAGLALVLMYLFV  289 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHH-HHHHHHHHHHHHHH
Confidence            3333444444555668899999886 999999999999999999999999999999999998743 34443333322221


Q ss_pred             CCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021040          109 GGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFS  188 (318)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~  188 (318)
                      .       .++  .......    .++.+++.+...+...+...+..+  +++++..+.......+|..+++.+.+.+.+
T Consensus       290 ~-------~~~--~~~~~~~----~~~~G~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~  354 (394)
T PRK03699        290 N-------TDD--PSHLLYA----ILGLGFFSSAIYTTIITLGSQQTK--VASPKLVNFILTCGTIGTMLTFVVTSPIVA  354 (394)
T ss_pred             H-------cCC--chHHHHH----HHHHHHHHHHHHHHHHHHHHHHcc--CCCHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            1       111  1111111    123444444333333444455443  345566666666667777777666665554


Q ss_pred             hhccCcccchhHHHHHHHHHHHHHHHHHHH
Q 021040          189 VSTAKTHADLENQYRWIAYSSIFIGCCFVG  218 (318)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~  218 (318)
                      .          .+++..+++.+++..++.+
T Consensus       355 ~----------~g~~~~~~~~~~~~~~~~~  374 (394)
T PRK03699        355 H----------FGLQAALLTANGLYAVVFV  374 (394)
T ss_pred             H----------hCchhhhhhhHHHHHHHHH
Confidence            3          3455565555544444433

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.12  E-value=1.6e-09  Score=102.32  Aligned_cols=167  Identities=15%  Similarity=-0.025  Sum_probs=103.9

Q ss_pred             HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCcc---
Q 021040           44 FTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTS---  120 (318)
Q Consensus        44 ~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~---  120 (318)
                      ..+.+.++.+.|.+..+.++......+...++.++.|+++||+|||+. +..+.++.+++...+..+..+  .....   
T Consensus       304 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  380 (481)
T TIGR00879       304 MYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPL-LLIGAAGMAICLFVLGILGAS--FVTGSSKS  380 (481)
T ss_pred             HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH-HHHHHHHHHHHHHHHHHHhhc--ccCCcccc
Confidence            344555656669999888999999999999999999999999999988 455666666554433210000  01100   


Q ss_pred             chhHHHHHHHHHHHHHHHHHhhh-HHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchh
Q 021040          121 TLKVETISYCVFAAIFNVGWAAT-QVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLE  199 (318)
Q Consensus       121 ~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~  199 (318)
                      .........    .+...+.+.. .+....+..|..+ +++|++..+..+...++|.++++.+.+.+...          
T Consensus       381 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~----------  445 (481)
T TIGR00879       381 SGNVAIVFI----LLFIAFFAMGWGPVPWVIVSEIFP-LSLRPKGISIAVAANWLANFIVGFLFPTMLES----------  445 (481)
T ss_pred             hhHHHHHHH----HHHHHHHHccccCeehhhhhccCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------
Confidence            011111111    1122222221 2223445577765 57899999999888888888776655444432          


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 021040          200 NQYRWIAYSSIFIGCCFVGIFLSRTEEPR  228 (318)
Q Consensus       200 ~~~~~~~~i~~~~~~l~~~~~~~~~~e~~  228 (318)
                      .+|++.+++.++++++..++.+++.||++
T Consensus       446 ~~~~~~f~~~~~~~~~~~i~~~~~~~~~~  474 (481)
T TIGR00879       446 IGVGGVFIFFGGLNVLGLIFVYFFLPETK  474 (481)
T ss_pred             cCccceehhHHHHHHHHHHHHheecccCC
Confidence            35777777777777777777666677754

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.11  E-value=9.8e-09  Score=95.51  Aligned_cols=158  Identities=16%  Similarity=0.075  Sum_probs=100.2

Q ss_pred             HHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCccc
Q 021040           38 ITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRIL  117 (318)
Q Consensus        38 ~~~~~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~  117 (318)
                      .......++++.|+++.|.+  +.++......+...++.++.|++.||+||||. +..+....+++...+..       .
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~-~~~~~~~~~~~~~~~~~-------~  299 (399)
T PRK05122        230 IGFGTIATFITLYYAARGWD--GAALALTLFGVAFVGARLLFGNLINRLGGLRV-AIVSLLVEILGLLLLWL-------A  299 (399)
T ss_pred             HHHHHHHHHHHHHHHHcccc--cchHHHHHHHHHHHHHHHHHHHHHHHhccHHH-HHHHHHHHHHHHHHHHH-------h
Confidence            34445557788888877663  44566677788888999999999999999887 45566666665543321       1


Q ss_pred             CccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccc
Q 021040          118 STSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHAD  197 (318)
Q Consensus       118 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~  197 (318)
                      +  +.....    +..++.+++.+...+.......|..+ +++|+++.+..+....+|..+++.+.+.+.+         
T Consensus       300 ~--~~~~~~----~~~~l~G~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~---------  363 (399)
T PRK05122        300 P--SPWMAL----IGAALTGFGFSLVFPALGVEAVKRVP-PQNRGAALGAYSVFLDLSLGITGPLAGLVAS---------  363 (399)
T ss_pred             c--cHHHHH----HHHHHHHHhHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence            1  122111    12234566666555444455556654 5789999999888888887766555544443         


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHh
Q 021040          198 LENQYRWIAYSSIFIGCCFVGIFLS  222 (318)
Q Consensus       198 ~~~~~~~~~~i~~~~~~l~~~~~~~  222 (318)
                       ..+|++.+.+.+++.++..++..+
T Consensus       364 -~~g~~~~~~~~~~~~~~~~~~~~~  387 (399)
T PRK05122        364 -WFGYPSIFLAAALAALLGLALTWL  387 (399)
T ss_pred             -HcCHHHHHHHHHHHHHHHHHHHHH
Confidence             235777777766666655544443

>PRK03545 putative arabinose transporter; Provisional

Probab=99.09  E-value=8e-09  Score=95.93  Aligned_cols=158  Identities=12%  Similarity=0.011  Sum_probs=101.0

Q ss_pred             HHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCcc
Q 021040           42 CWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTS  120 (318)
Q Consensus        42 ~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~  120 (318)
                      ....++++|+++. |.|..+.+++.....+...+++++.|+++||+|||+.  ..+.....++...+..      ..  .
T Consensus       223 ~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~--~~~~~~~~~~~~~l~~------~~--~  292 (390)
T PRK03545        223 TAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFL--LIAIALLLVCLLLLLP------AA--N  292 (390)
T ss_pred             HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHH--HHHHHHHHHHHHHHHH------Hh--c
Confidence            3456788888886 9999999999999999999999999999999998764  3344444444332210      01  1


Q ss_pred             chhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchhH
Q 021040          121 TLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLEN  200 (318)
Q Consensus       121 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~  200 (318)
                      +.....    +..++.+++.........+.+.+..+  ++|+++.+..+....+|..+++.+++.+.+.          .
T Consensus       293 ~~~~~~----~~~~l~g~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~----------~  356 (390)
T PRK03545        293 SEWHLS----VLSIFWGIAIMCIGLAMQVKVLKLAP--DATDVAMALFSGIFNIGIGAGALLGNQVSLH----------L  356 (390)
T ss_pred             hHHHHH----HHHHHHHHHHhcchHHHHHHHHHhCC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------c
Confidence            122111    11234555554444444555556543  5788888888887888888777766655532          4


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhccc
Q 021040          201 QYRWIAYSSIFIGCCFVGIFLSRTE  225 (318)
Q Consensus       201 ~~~~~~~i~~~~~~l~~~~~~~~~~  225 (318)
                      +++..+.+.+.+.++..+......|
T Consensus       357 g~~~~~~~~~~~~~~~~~~~~~~~~  381 (390)
T PRK03545        357 GLSSIGYVGAALALAALVWSILIFR  381 (390)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHcc
Confidence            5666776666666655555544444

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.09  E-value=6.5e-09  Score=93.97  Aligned_cols=165  Identities=16%  Similarity=0.159  Sum_probs=118.0

Q ss_pred             ccchHHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCch-HHHHHHHHHHHHHHHHHh
Q 021040           31 SGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFK-IWHGAGSVLVAVSFSSVF  108 (318)
Q Consensus        31 ~~~~~~~~~~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~-~~l~~g~~~~~i~~~~~~  108 (318)
                      +..+...........+.+.+.++. |.++.+.+.......+...++.++.|+++||+|||+ . +..+.+...++.....
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~  260 (352)
T cd06174         182 LAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLL-LLIGLLLAALGLLLLA  260 (352)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH-HHHHHHHHHHHHHHHH
Confidence            333444445555667888888887 999999999999999999999999999999999998 6 5667776666655432


Q ss_pred             CCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021040          109 GGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFS  188 (318)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~  188 (318)
                      .       .+  +.....    +...+.+++.+...+...++..|..+ +++|++..+..+....+|..+++.+.+.+.+
T Consensus       261 ~-------~~--~~~~~~----~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~  326 (352)
T cd06174         261 L-------AP--SLALLL----VALLLLGFGLGFAFPALLTLASELAP-PEARGTASGLFNTFGSLGGALGPLLAGLLLD  326 (352)
T ss_pred             H-------hc--cHHHHH----HHHHHHHHHHhccchhHHHHHHhhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            1       11  122112    22245667777777777888888875 5899999999999999998887766655543


Q ss_pred             hhccCcccchhHHHHHHHHHHHHHHHHHHHHH
Q 021040          189 VSTAKTHADLENQYRWIAYSSIFIGCCFVGIF  220 (318)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~  220 (318)
                                ..+|++.+.+.+++.++..+..
T Consensus       327 ----------~~~~~~~~~~~~~~~~i~~i~~  348 (352)
T cd06174         327 ----------TGGYGGVFLILAALALLAALLL  348 (352)
T ss_pred             ----------ccCcchHHHHHHHHHHHHHHHh
Confidence                      2467777777776666555443

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.09  E-value=3.4e-09  Score=99.47  Aligned_cols=164  Identities=10%  Similarity=-0.061  Sum_probs=101.1

Q ss_pred             HHHHHHHHHHHHHHh----CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCc
Q 021040           40 AACWFTYLLLFLTDI----GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCR  115 (318)
Q Consensus        40 ~~~~~~~l~~~l~~~----gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~  115 (318)
                      .......++.|+.+.    +.+..+.|.+.++..+...+++++.|+++||+||||. +..+.++.+++......      
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~-~~~~~~l~~~~~~l~~~------  311 (420)
T PRK09528        239 YDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNA-LLLAGTIMAVRIIGSGF------  311 (420)
T ss_pred             HHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchh-hHHHHHHHHHHHHHHHh------
Confidence            333444566666653    5677889999999999999999999999999999998 45566666665543321      


Q ss_pred             ccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHH-HHHHHHHHHHHHHHHHHHHHHhhccCc
Q 021040          116 ILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSC-RNAFTMVANLSLYAIAFIVFSVSTAKT  194 (318)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~-~~~~~~~g~~~~~~~~~~l~~~~~~~~  194 (318)
                       .+  +.+.....    ..+.+++.+........++.+..+ ++.|+...+. .+....+|.++++.+.+.+.+      
T Consensus       312 -~~--~~~~~~~~----~~l~g~~~~~~~~~~~~~~~~~~~-~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~------  377 (420)
T PRK09528        312 -AT--GPLEVSIL----KLLHAFEVPFLLVGVFKYITLNFD-VRLSATIYLVGFQFAKQLGAVFLSTLAGNLYD------  377 (420)
T ss_pred             -cc--cHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHcC-ccceeeeeeehHHHHHHHHHHHHHHHHHHHHH------
Confidence             11  12222211    223445555444444556666664 4566655443 344556676666655555543      


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 021040          195 HADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPR  228 (318)
Q Consensus       195 ~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~  228 (318)
                          ..+|+..+.+.+++.++..++..+..++++
T Consensus       378 ----~~G~~~~f~~~~~~~~i~~~~~~~~~~~~~  407 (420)
T PRK09528        378 ----SIGFQGTYLILGGIVLLFTLISVFTLSGDR  407 (420)
T ss_pred             ----hhCchHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence                245787887777666666666656655543

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.09  E-value=3.6e-09  Score=97.09  Aligned_cols=173  Identities=11%  Similarity=0.011  Sum_probs=105.3

Q ss_pred             hhhhcccchHHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHH-
Q 021040           26 VLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVS-  103 (318)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~-  103 (318)
                      .+...+..+...........+++.|+++. |.+..+.+++.....+...++.++.|+++||+|||+..+........++ 
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  296 (399)
T TIGR00893       217 VWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAG  296 (399)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHH
Confidence            34444445555556666778889999886 9999999999999999999999999999999999862111111111111 


Q ss_pred             ---HHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHH
Q 021040          104 ---FSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLY  180 (318)
Q Consensus       104 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~  180 (318)
                         ....+.  .    . ..+.........   .+...+.+ ..+...++..|..+ +++|++..+..+....+|..+++
T Consensus       297 ~~~~~~~~~--~----~-~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~g~~~~~  364 (399)
T TIGR00893       297 LVLSLLMFA--T----N-YVNIPYAALALV---ALGFFGLG-AGAIGWALISDNAP-GNIAGLTGGLINSLGNLGGIVGP  364 (399)
T ss_pred             HHHHHHHHH--h----c-cchhHHHHHHHH---HHHHhchh-hhhHHHHHHHhhcC-hhHHHHHHHHHHHHHHHhhhhhh
Confidence               111110  0    0 011111111111   11222222 45556677888875 57899999999988888888776


Q ss_pred             HHHHHHHHhhccCcccchhHH-HHHHHHHHHHHHHHHHHHH
Q 021040          181 AIAFIVFSVSTAKTHADLENQ-YRWIAYSSIFIGCCFVGIF  220 (318)
Q Consensus       181 ~~~~~l~~~~~~~~~~~~~~~-~~~~~~i~~~~~~l~~~~~  220 (318)
                      .+.+.+.+.          .+ |++.+.+.++..++..+..
T Consensus       365 ~i~g~l~~~----------~g~~~~~~~~~~~~~~~~~~~~  395 (399)
T TIGR00893       365 IVIGAIAAT----------TGSFAGALMVVAALALIGALSY  395 (399)
T ss_pred             HHhhhhccC----------CCchhHHHHHHHHHHHHHHHHH
Confidence            655444422          23 6777766665555554443

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.09  E-value=4.1e-09  Score=97.00  Aligned_cols=144  Identities=17%  Similarity=0.080  Sum_probs=91.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCC
Q 021040           34 MLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCM  112 (318)
Q Consensus        34 ~~~~~~~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~  112 (318)
                      +..........++++.|+++. |.+..+.+.+.....+...+.+++.|+++||+|||+.++..+.+....+......  .
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~--~  306 (394)
T TIGR00883       229 IATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMA--L  306 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHH--H
Confidence            344444555667889999775 9999999999999999999999999999999999987543333332222111110  0


Q ss_pred             CCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 021040          113 PCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCR-NAFTMVANLSLYAIAFIVFS  188 (318)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~-~~~~~~g~~~~~~~~~~l~~  188 (318)
                          ....+... ..   ....+.+++.+....+..+.++|..| +++|+++.+.. +....+|..+++.+++.+.+
T Consensus       307 ----~~~~~~~~-~~---~~~~~~g~~~~~~~~~~~~~~~~~~p-~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~  374 (394)
T TIGR00883       307 ----LDSGSFTL-FF---FLVLGLALIGGMYTGPMGSFLPELFP-TEVRYTGASLAYNLAGAIFGGFAPYIAAALVA  374 (394)
T ss_pred             ----hcCCchHH-HH---HHHHHHHHHHHHHhhhHHHHHHHhCC-ccceeeEeeehhHhHHHHHhhHHHHHHHHHHH
Confidence                01111121 11   11133555566666677788889886 46788877763 44445666666666655554

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.08  E-value=1.5e-08  Score=95.06  Aligned_cols=162  Identities=9%  Similarity=-0.077  Sum_probs=108.5

Q ss_pred             HHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCcc
Q 021040           42 CWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTS  120 (318)
Q Consensus        42 ~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~  120 (318)
                      ....++|.|.++. |.+..+.|++.+...+...++.++.|+++||.++++. +..+.+..++++.....       .+  
T Consensus       241 ~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~-l~~~~~~~~~~~~~~~~-------~~--  310 (417)
T PRK10489        241 AVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLL-MLLSTLGSFLAVGLFGL-------MP--  310 (417)
T ss_pred             hHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchH-HHHHHHHHHHHHHHHHc-------cc--
Confidence            3456788899984 9999999999999999999999999999999777766 45566665555543321       11  


Q ss_pred             chhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchhH
Q 021040          121 TLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLEN  200 (318)
Q Consensus       121 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~  200 (318)
                      +.....+    ..++.+++.+...+...+++.+..| ++.|+++.+..+....+|..+++.+.+.+.+..          
T Consensus       311 ~~~~~~~----~~~~~g~~~~~~~~~~~~~~~~~~p-~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~----------  375 (417)
T PRK10489        311 MWILAVL----CLALFGYLSAISSLLQYTLLQTQTP-DEMLGRINGLWTAQNVTGDAIGAALLGGLGAMM----------  375 (417)
T ss_pred             hHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhCC-HHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHh----------
Confidence            1111111    1134555555555555567777765 567999999998888888888887777666432          


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccccc
Q 021040          201 QYRWIAYSSIFIGCCFVGIFLSRTEEPR  228 (318)
Q Consensus       201 ~~~~~~~i~~~~~~l~~~~~~~~~~e~~  228 (318)
                      +++..+++.++...+...+....++|.+
T Consensus       376 g~~~~~~~~~~~~~~~~~~~~~~~~~~~  403 (417)
T PRK10489        376 TPVASASASGFGLLIIGVLLLLVLGELR  403 (417)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHhccccc
Confidence            3444555555555555555555666654

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.07  E-value=1.8e-08  Score=100.29  Aligned_cols=140  Identities=15%  Similarity=-0.032  Sum_probs=92.1

Q ss_pred             HHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHh
Q 021040           62 AAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWA  141 (318)
Q Consensus        62 g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  141 (318)
                      .+...+..+...++.++.|+++||+|||+. +.++.++.+++.+++..       .++  ....++..    ++.+++.+
T Consensus       598 ~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~-l~~~~~lsai~~ll~~~-------~~s--~~~ll~~~----~l~g~~~~  663 (742)
T TIGR01299       598 YFVNFLGTLAVLPGNIVSALLMDKIGRLRM-LAGSMVLSCISCFFLSF-------GNS--ESAMIALL----CLFGGLSI  663 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCHHH-HHHHHHHHHHHHHHHHH-------Hcc--HHHHHHHH----HHHHHHHH
Confidence            444667778889999999999999999988 56677777776554321       111  12112111    23444444


Q ss_pred             hhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHH
Q 021040          142 ATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFL  221 (318)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~  221 (318)
                      .......++++|+.| .++|+++.++.+....+|.++++.+++.+..           ......+++.+++.++.+++. 
T Consensus       664 ~~~~~~~a~~aEl~P-t~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~-----------~~~~~pf~i~a~~lll~~ll~-  730 (742)
T TIGR01299       664 AAWNALDVLTVELYP-SDKRATAFGFLNALCKAAAVLGILIFGSFVG-----------ITKAAPILFASAALACGGLLA-  730 (742)
T ss_pred             HHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------hhhHHHHHHHHHHHHHHHHHH-
Confidence            444456678899886 4789999999999999999988877655542           123445566666555555444 


Q ss_pred             hcccccc
Q 021040          222 SRTEEPR  228 (318)
Q Consensus       222 ~~~~e~~  228 (318)
                      .++||++
T Consensus       731 ~~LPET~  737 (742)
T TIGR01299       731 LKLPDTR  737 (742)
T ss_pred             HhCCCCc
Confidence            3558864

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK09952 shikimate transporter; Provisional

Probab=99.05  E-value=2.8e-08  Score=93.96  Aligned_cols=171  Identities=13%  Similarity=0.012  Sum_probs=99.0

Q ss_pred             HHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCc
Q 021040           37 DITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCR  115 (318)
Q Consensus        37 ~~~~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~  115 (318)
                      ........++.+.|+++. |.+......+..+..+...++.++.|+++||+||||.. ..+.++.+++....+.   .  
T Consensus       263 ~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~-~~~~~~~~~~~~~~~~---~--  336 (438)
T PRK09952        263 LLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVY-ITGALIGTLSAFPFFM---A--  336 (438)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHH-HHHHHHHHHHHHHHHH---H--
Confidence            344455667888888775 99888776666667777888999999999999999874 4555544443322211   0  


Q ss_pred             ccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHH-HHHHHHHHHHHHHHHHHhhccCc
Q 021040          116 ILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAF-TMVANLSLYAIAFIVFSVSTAKT  194 (318)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~-~~~g~~~~~~~~~~l~~~~~~~~  194 (318)
                      ........ ..+   +..++.+++.+.......++.+|..+. +.|+...++.+.. ..+|+.+++.+.+.+.+..+   
T Consensus       337 ~~~~~~~~-~~~---~~~~l~~~~~~~~~~~~~~~~~e~~p~-~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~---  408 (438)
T PRK09952        337 LEAQSIFW-IVF---FSIMLANIAHDMVVCVQQPMFTEMFGA-SYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFG---  408 (438)
T ss_pred             HHcCChHH-HHH---HHHHHHHHHHHHHHHHHHHHHHHHCCc-chhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcC---
Confidence            00111111 111   111234455555555667888898864 6788777765433 33565555555544443211   


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 021040          195 HADLENQYRWIAYSSIFIGCCFVGIFLSRTEEP  227 (318)
Q Consensus       195 ~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~  227 (318)
                           .+|...+...++.+++..+.. +.+||+
T Consensus       409 -----~~~~~~~~~~~~~~~i~~v~~-~~~~~~  435 (438)
T PRK09952        409 -----GSWHSVAIYLLAGCLISAMTA-LLMKDN  435 (438)
T ss_pred             -----CCchHHHHHHHHHHHHHHHHH-HHcccc
Confidence                 236666555555555444443 445664

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.05  E-value=1.4e-08  Score=94.48  Aligned_cols=165  Identities=10%  Similarity=0.043  Sum_probs=104.4

Q ss_pred             HHHHHHHHHHHHHHHHHhCCChh----HHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCC
Q 021040           37 DITAACWFTYLLLFLTDIGLSPR----GAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCM  112 (318)
Q Consensus        37 ~~~~~~~~~~l~~~l~~~gls~~----~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~  112 (318)
                      ........++++.|..+.+.+..    ..+.+..+..+...+..+..|+++||+|||+. +..+.....++.....    
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~-~~~~~~~~~~~~~~~~----  306 (408)
T PRK09874        232 QVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKI-LITALIFSVLLLIPMS----  306 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchh-HHHHHHHHHHHHHHHH----
Confidence            33344455677888887622222    35666777788888999999999999999988 4556555554443221    


Q ss_pred             CCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 021040          113 PCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTA  192 (318)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~  192 (318)
                         ..+  +.+...    +...+.+++.+...+...+...+..+ +++|++..+..+....+|..+++.+++.+.+    
T Consensus       307 ---~~~--~~~~~~----~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~----  372 (408)
T PRK09874        307 ---FVQ--TPLQLG----ILRFLLGAADGALLPAVQTLLVYNSS-NQIAGRIFSYNQSFRDIGNVTGPLMGAAISA----  372 (408)
T ss_pred             ---Hhc--cHHHHH----HHHHHHHhhhHhhHHHHHHHHHHhCC-cccceeeehHHHHHHHHHHHhhHHHHHHHHh----
Confidence               111  122111    11234566666666666666666554 5678888888888888888887777665543    


Q ss_pred             CcccchhHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 021040          193 KTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEE  226 (318)
Q Consensus       193 ~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e  226 (318)
                            ..+|++.+.+.+++.++..+...+..++
T Consensus       373 ------~~g~~~~f~~~~~~~l~~~~~~~~~~~~  400 (408)
T PRK09874        373 ------NYGFRAVFLVTAGVVLFNAVYSWNSLRR  400 (408)
T ss_pred             ------hcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  2468888887777777666655544444

>PRK12382 putative transporter; Provisional

Probab=99.05  E-value=2.2e-08  Score=92.96  Aligned_cols=157  Identities=17%  Similarity=0.039  Sum_probs=102.9

Q ss_pred             HHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCc
Q 021040           40 AACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILST  119 (318)
Q Consensus        40 ~~~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~  119 (318)
                      ......+.+.|+++.|.+.  .+.......+...+++++.|++.||+||||. +..+..+.++++.....       .+ 
T Consensus       232 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~-~~~~~~~~~~~~~~~~~-------~~-  300 (392)
T PRK12382        232 FAVIGTFVSLYFASKGWAM--AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKV-AIVSLLVETVGLLLLWL-------AP-  300 (392)
T ss_pred             HhHHHHHHHHHHHhcCCch--hHHHHHHHHHHHHHHHHHHHHHHHhcCCCee-hHHHHHHHHHHHHHHHH-------cc-
Confidence            3445567788888777654  4556667778888999999999999999988 55666666666543321       11 


Q ss_pred             cchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchh
Q 021040          120 STLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLE  199 (318)
Q Consensus       120 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~  199 (318)
                       +.....+    ...+.+++.+...+...+...+..+ +++|++..+..+....+|..+++.+.+.+.+.          
T Consensus       301 -~~~~~~~----~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~----------  364 (392)
T PRK12382        301 -TAWVALA----GAALTGAGCSLIFPALGVEVVKRVP-SQVRGTALGGYAAFQDIAYGVSGPLAGMLATS----------  364 (392)
T ss_pred             -cHHHHHH----HHHHHHHHHHhHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Confidence             1221111    1234556666555555566666654 57899999999888888888777666555532          


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhc
Q 021040          200 NQYRWIAYSSIFIGCCFVGIFLSR  223 (318)
Q Consensus       200 ~~~~~~~~i~~~~~~l~~~~~~~~  223 (318)
                      .+|++.+.+.+.+.++..++..+.
T Consensus       365 ~g~~~~~~~~~~~~~~~~~~~~~~  388 (392)
T PRK12382        365 FGYPSVFLAGAISAVLGIIVTILS  388 (392)
T ss_pred             hCchHHHHHHHHHHHHHHHHHHhh
Confidence            467878777766665555544433

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.03  E-value=4.6e-09  Score=100.06  Aligned_cols=167  Identities=12%  Similarity=0.008  Sum_probs=102.4

Q ss_pred             HHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccchhHH
Q 021040           46 YLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVE  125 (318)
Q Consensus        46 ~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  125 (318)
                      +.|.++.+.|.+....++......+...++.++.|+++||+|||+. +..+.++.+++...+..  ..   ..+......
T Consensus       293 ~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~-~i~~~~~~~v~~~~l~~--~~---~~~~~~~~~  366 (479)
T PRK10077        293 YAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPL-QIIGALGMAIGMFSLGT--AF---YTQAPGIVA  366 (479)
T ss_pred             HHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHH-HHHhHHHHHHHHHHHHH--HH---hcCcccHHH
Confidence            3455555568887777777777888889999999999999999987 56677776666544321  10   001111111


Q ss_pred             HHHHHHHHHHHHHHHhh-hHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH--hhccCcccchhHHH
Q 021040          126 TISYCVFAAIFNVGWAA-TQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFS--VSTAKTHADLENQY  202 (318)
Q Consensus       126 ~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~--~~~~~~~~~~~~~~  202 (318)
                      ..  .+  ++++++.+. ..+...++++|..+ +++|+++.++.+....+|.++++.+.+.+..  ...      ...++
T Consensus       367 ~~--~~--~~~~~~~~~~~~~~~~~~~~e~~p-~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~------~~~~~  435 (479)
T PRK10077        367 LL--SM--LFYVAAFAMSWGPVCWVLLSEIFP-NAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLV------AHFHN  435 (479)
T ss_pred             HH--HH--HHHHHHHhccccchhHHHhHhhCC-hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchh------hhccC
Confidence            11  11  123333332 22334677788875 5789999999998888888887665533221  111      02345


Q ss_pred             HHHHHHHHHHHHHHHHHHHhccccccc
Q 021040          203 RWIAYSSIFIGCCFVGIFLSRTEEPRL  229 (318)
Q Consensus       203 ~~~~~i~~~~~~l~~~~~~~~~~e~~~  229 (318)
                      ++.+++.+++++++.++.+++.||+++
T Consensus       436 ~~~~~~~~~~~~~~~~~~~~~~~e~~~  462 (479)
T PRK10077        436 GFSYWIYGCMGVLAALFMWKFVPETKG  462 (479)
T ss_pred             ccHHHHHHHHHHHHHHHHHhccccCCC
Confidence            566666666666666666666777643

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=99.02  E-value=2.9e-11  Score=116.39  Aligned_cols=253  Identities=9%  Similarity=0.084  Sum_probs=1.6

Q ss_pred             HhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCc-------------
Q 021040           53 DIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILST-------------  119 (318)
Q Consensus        53 ~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~-------------  119 (318)
                      +.+++.++.|++.+.+-+...+..++..++.+|. +|-.|+.+|.++++++.++..   +|.-+.+.             
T Consensus        32 RF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~-hrprwig~g~~~~~~g~~l~~---lPhf~~~~y~~~~~~~~~~~~  107 (539)
T PF03137_consen   32 RFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRG-HRPRWIGIGALLMGLGSLLFA---LPHFLSGPYSYEEASNSNGNS  107 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCcceeeecHHHHHHHHHHHh---ccHhhcCCCcccccccccccc
Confidence            3599999999999999999999999999999885 556678889999888866443   33221100             


Q ss_pred             ---------------------------cchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHH
Q 021040          120 ---------------------------STLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFT  172 (318)
Q Consensus       120 ---------------------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~  172 (318)
                                                 .+....+..+++..++.|+|.+...+...+++-|.++ +++-+...++.+...
T Consensus       108 ~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~-~~~splYiGi~~~~~  186 (539)
T PF03137_consen  108 SISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVS-KKNSPLYIGILYAMS  186 (539)
T ss_dssp             --------------------------------------------SSS---------------------------------
T ss_pred             ccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccc-cccCccchhhhhHHh
Confidence                                       0000011122222234455555444444556666553 344556667777777


Q ss_pred             HHHHHHHHHHHHHHHHhhccCc----------ccch--hHHHHHHHHHHHHHHHHHHHHHHhcccccccc---------c
Q 021040          173 MVANLSLYAIAFIVFSVSTAKT----------HADL--ENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLK---------M  231 (318)
Q Consensus       173 ~~g~~~~~~~~~~l~~~~~~~~----------~~~~--~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~---------~  231 (318)
                      .+|-++|.++++..+..+-+.+          +.|.  .-.|..-+++.+++.++.++..+.+-|+-+..         +
T Consensus       187 ~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~lp~~~~~~~~~~~~  266 (539)
T PF03137_consen  187 ILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPKKLPGTSERQEEKESS  266 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCcccccchhhhh
Confidence            7777777777666554322211          1111  01232233556666666666555443332211         0


Q ss_pred             c-c----------CCC---------CchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhccccccchhhHH
Q 021040          232 G-L----------RGN---------SHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALV  291 (318)
Q Consensus       232 ~-~----------~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~  291 (318)
                      + +          +++         +.+....+++++||.|+...++..+..+...++.++.|.|++.+++.+++....+
T Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l  346 (539)
T PF03137_consen  267 ERKEEDSDKDSFKDPKSKKSFGKSIKDFPKALKRLLTNPVFMCLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLL  346 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hcchhhhhhhcccccccccchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence            0 0          000         1233456788999999999999999999999999999999999999987544333


Q ss_pred             H-HH----HHHHHHHHHHHHHHHH
Q 021040          292 P-AI----IYICSFIVSILLQVIS  310 (318)
Q Consensus       292 ~-~~----~~v~~~i~~~~~~~i~  310 (318)
                      . .+    ..++.++++++.+|..
T Consensus       347 ~G~v~ip~~~~G~llGG~ivkk~k  370 (539)
T PF03137_consen  347 TGIVSIPGAALGILLGGYIVKKFK  370 (539)
T ss_dssp             ------------------------
T ss_pred             HhhhhcchhheehheEEEEEEEec
Confidence            2 22    2345555555555553

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.00  E-value=8e-09  Score=94.07  Aligned_cols=169  Identities=11%  Similarity=0.024  Sum_probs=103.5

Q ss_pred             hhcccchHHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhh--ccCchHHHHHHHHHHHHHH
Q 021040           28 YYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDR--FGHFKIWHGAGSVLVAVSF  104 (318)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr--~Grr~~~l~~g~~~~~i~~  104 (318)
                      ..++.++..=+....+..+.|.|+.|. |.|...+++..+.+-.+...+.+++|++|||  -|||.|.-++..++..++.
T Consensus       256 ~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~  335 (448)
T COG2271         256 LLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASL  335 (448)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHH
Confidence            344444444445555667889999998 9999999999999999999999999999998  3899996666666666666


Q ss_pred             HHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhH--HhHhhhccccccCccchhHHHHHHHHHHHH-HHHHHHH
Q 021040          105 SSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQ--VAHMSMVNCITLNSTSRVVLTSCRNAFTMV-ANLSLYA  181 (318)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~-g~~~~~~  181 (318)
                      ...|.  .     ++.+.....+.      ++.+|+-.+.  .-......|..| ++--+++.|....++.+ |...+. 
T Consensus       336 ~~~w~--~-----~~~~~~l~~~~------l~~iGf~IyGPqmLiGl~a~e~~p-K~AaGtA~Gf~Glf~Yl~Ga~~a~-  400 (448)
T COG2271         336 VLYWL--A-----PNGSYLLDAIL------LFIIGFLIYGPQMLIGLAAAEFVP-KKAAGTATGFVGLFAYLIGAALAG-  400 (448)
T ss_pred             HHHHc--C-----CCccHHHHHHH------HHHHHHHHhhHHHHHHHHHhcccc-HhhccchhchhhhHHHHhhHHhcC-
Confidence            65553  2     22222221211      1222222222  122334457665 45678888888888777 444332 


Q ss_pred             HHHHHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHH
Q 021040          182 IAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIF  220 (318)
Q Consensus       182 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~  220 (318)
                         ..++...     | ..+|...|.+..+.++++.+..
T Consensus       401 ---~~~g~i~-----d-~~gW~g~Fi~~~~~a~l~~lll  430 (448)
T COG2271         401 ---LPLGYIA-----D-TWGWDGGFIVLSIAALLAILLL  430 (448)
T ss_pred             ---CcceeeE-----e-cCCCcchHHHHHHHHHHHHHHH
Confidence               2233221     1 2467666655544444444433

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.99  E-value=1.2e-08  Score=99.44  Aligned_cols=255  Identities=11%  Similarity=0.061  Sum_probs=166.6

Q ss_pred             hCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcc----------------c
Q 021040           54 IGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRI----------------L  117 (318)
Q Consensus        54 ~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~----------------~  117 (318)
                      .+++.++.|++...+-+...+...+..+..-|..|-| |+.+|.++++++.++...   |.-+                .
T Consensus       127 F~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr-~Ig~G~~~m~lgsll~al---PHf~~~~y~~~~~~~~~~~~~  202 (735)
T KOG3626|consen  127 FKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPR-WIGIGLVLMGLGSLLFAL---PHFFSGPYEYELEVIKQSVEN  202 (735)
T ss_pred             cCCCCCcceeEeeecccchhhhhHhHHHhccccCccc-eeeechhHHHHHHHHHhC---hHHhcCcchhhhhhhhccccC
Confidence            3999999999999999999999999999999876655 588899999888765543   3111                0


Q ss_pred             C--------------------------ccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHH
Q 021040          118 S--------------------------TSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAF  171 (318)
Q Consensus       118 ~--------------------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~  171 (318)
                      +                          ..+....++.+++-.++.|+|.+...+.-.+++-|... +++-....++.+.+
T Consensus       203 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk-~~~SplYlgi~~~~  281 (735)
T KOG3626|consen  203 PSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVK-KKNSPLYLGILYSM  281 (735)
T ss_pred             CccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCcccccccc-ccCCcHHHHHHHHH
Confidence            0                          00001112233333345666666555555566666553 34445667777777


Q ss_pred             HHHHHHHHHHHHHHHHHhhccC-------cccch--hHHHHHHHHHHHHHHHHHHHHHHhcccccccccc----------
Q 021040          172 TMVANLSLYAIAFIVFSVSTAK-------THADL--ENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMG----------  232 (318)
Q Consensus       172 ~~~g~~~~~~~~~~l~~~~~~~-------~~~~~--~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~----------  232 (318)
                      ..+|-++|.++++.......+.       ++.|.  .-.|..-|++.+.+.++.++..+++-||.++..+          
T Consensus       282 ~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk~lp~~~~~~~~~~~~~~  361 (735)
T KOG3626|consen  282 AILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPKELPKSQKRKRARDLHVL  361 (735)
T ss_pred             HHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCcccCccccccchhhhhccc
Confidence            7788777777766665543222       11221  1235445677888888888777776665443210          


Q ss_pred             --cC----CC-------CchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhccccccchhhHHH-HHHHHH
Q 021040          233 --LR----GN-------SHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVP-AIIYIC  298 (318)
Q Consensus       233 --~~----~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~-~~~~v~  298 (318)
                        ++    ++       +.+.+..+++++||-|+..+++..+......++.+|+|.|++.++|.+++....+. .+...+
T Consensus       362 k~~~~~~~~~~~~~~~ikdfp~s~~~ll~N~if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~  441 (735)
T KOG3626|consen  362 KTESGGAKSDKTFGKKIKDFPKSIKRLLSNPIFMLVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPA  441 (735)
T ss_pred             ccccccccCCcchhhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhh
Confidence              00    01       12446678999999999999999999999999999999999999999986443333 344445


Q ss_pred             HHHHHHHHHHHHHhh
Q 021040          299 SFIVSILLQVISLKL  313 (318)
Q Consensus       299 ~~i~~~~~~~i~~~~  313 (318)
                      +.++.++.+.+.||+
T Consensus       442 ~~~Gi~lGG~iikkf  456 (735)
T KOG3626|consen  442 AAVGIFLGGLIIKKF  456 (735)
T ss_pred             hhhhhhccceeeeee
Confidence            555555555555554

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=98.97  E-value=2.6e-08  Score=90.74  Aligned_cols=130  Identities=18%  Similarity=0.143  Sum_probs=82.4

Q ss_pred             HHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCccc
Q 021040           39 TAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRIL  117 (318)
Q Consensus        39 ~~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~  117 (318)
                      ....+..+++.|+++. |+++.++|.....+.+...+..|+.|++|||+|.+|. +.+....++++...+..  .+....
T Consensus       233 ~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv-~~~~f~~~~~~~~~l~~--~~~~~~  309 (417)
T COG2223         233 GFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRV-TLAVFVGMALAAALLSL--FLTGFG  309 (417)
T ss_pred             HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhH-HHHHHHHHHHHHHHHHc--cccccc
Confidence            3444667899999986 9999999999999999999999999999999998888 45555555565544432  111111


Q ss_pred             CccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHH
Q 021040          118 STSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANL  177 (318)
Q Consensus       118 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~  177 (318)
                      ...+....+..++......++|.+    ....+++.+.+  +|-+.+.++.....++|+.
T Consensus       310 ~~~~~~~~~~~~l~l~~~~G~GnG----svfk~Ip~if~--~~~G~v~G~vga~G~lGGf  363 (417)
T COG2223         310 HGGSFVVFVAVFLALFVFAGLGNG----SVFKMIPVIFP--KETGAVTGIVGAIGGLGGF  363 (417)
T ss_pred             cCcchHHHHHHHHHHHHHhccCcc----hheeechHHHH--hhhhHHHHHHHHhcccccc
Confidence            011122222222222222334433    44556666653  4667778877777666654

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=98.97  E-value=3e-08  Score=93.32  Aligned_cols=144  Identities=11%  Similarity=0.135  Sum_probs=93.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCC
Q 021040           34 MLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCM  112 (318)
Q Consensus        34 ~~~~~~~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~  112 (318)
                      +...........+.+.|.++. + +..+.+.+..+..+...++.++.|+++||+|||+.+ ..+.++.+++....+.   
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~-~~~~~~~~~~~~~~~~---  306 (437)
T TIGR00792       232 LFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILF-AGGILLMVLGYLIFFF---  306 (437)
T ss_pred             HHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHH-HHHHHHHHHHHHHHHH---
Confidence            333333333333334444444 5 566778888888899999999999999999999884 5677666666554431   


Q ss_pred             CCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccC------ccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 021040          113 PCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLN------STSRVVLTSCRNAFTMVANLSLYAIAFIV  186 (318)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~------~~~R~~~~~~~~~~~~~g~~~~~~~~~~l  186 (318)
                          .++ +.....    +..++.+++.+.......++++|..+.      +++++...+..+....+|..+++.+.+.+
T Consensus       307 ----~~~-~~~~~~----~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~l  377 (437)
T TIGR00792       307 ----AGS-NLPLIL----VLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLI  377 (437)
T ss_pred             ----cch-hHHHHH----HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                111 112111    112345666666666667777776531      23467888999899999999888888777


Q ss_pred             HHhhc
Q 021040          187 FSVST  191 (318)
Q Consensus       187 ~~~~~  191 (318)
                      .+..+
T Consensus       378 l~~~G  382 (437)
T TIGR00792       378 LGIIG  382 (437)
T ss_pred             HHHcC
Confidence            76544

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=98.97  E-value=5.6e-13  Score=126.07  Aligned_cols=234  Identities=13%  Similarity=0.111  Sum_probs=138.0

Q ss_pred             hhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCcc-chhHHHHHHHHHHHHH
Q 021040           58 PRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTS-TLKVETISYCVFAAIF  136 (318)
Q Consensus        58 ~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~  136 (318)
                      ..+.+++.+...++..+++++.|.++||+|||+.+ ..+.++..++.....       +++.. +....    .+.+++.
T Consensus        45 ~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~-~~~~~~~~i~~~~~~-------~~~~~~~~~~~----~~~R~~~  112 (451)
T PF00083_consen   45 SLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPAL-IISALLMIIGSILIA-------FAPSYNNFWML----LIGRFLI  112 (451)
T ss_pred             HHHHHHHHHHHHhhhcccccccccccccccccccc-ccccccccccccccc-------ccccccccccc----ccccccc
Confidence            35678999999999999999999999999999985 567776666654332       22200 12222    2233457


Q ss_pred             HHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchhHHHHHHHHHHHHHHHHH
Q 021040          137 NVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCF  216 (318)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~  216 (318)
                      |++.+........++.|..+ ++.|++..++.+....+|.+++..++... ....      ....||+.+.+.++++++.
T Consensus       113 G~~~g~~~~~~~~~~~E~~~-~~~R~~~~~~~~~~~~~G~~~~~~~~~~~-~~~~------~~~~Wr~~~~~~~~~~l~~  184 (451)
T PF00083_consen  113 GFGIGGAYVVSPIYISEIAP-PKHRGFLSSLFQLFWALGILLASLIGYIV-SYYS------DNWGWRILLIFGAIPSLLV  184 (451)
T ss_pred             cccccccccccccccccccc-ccccccccccccccccccccccccccccc-cccc------ccccccccccccccccccc
Confidence            77777777777788889886 57889988888888777777665443222 1111      0245887776666555544


Q ss_pred             HHHHHhccccccc-----c--ccc-----C---------C----CCch------HHHHHHHHhcHHH----HHHHHHHHH
Q 021040          217 VGIFLSRTEEPRL-----K--MGL-----R---------G----NSHA------RISWAYWFKKILY----YQVALVYML  261 (318)
Q Consensus       217 ~~~~~~~~~e~~~-----~--~~~-----~---------~----~~~~------~~~~~~~~~~~~~----~~~~~~~~~  261 (318)
                       ++...++||+|.     +  ++.     +         +    .++.      +..++++++++..    ...+....+
T Consensus       185 -~~~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~  263 (451)
T PF00083_consen  185 -LLLRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEIEDEEIEEIKAEKKESQESKASWRDLFRNKKYRKRLLIALLLQFF  263 (451)
T ss_pred             -cccccccccccceecccccccccccccccccccccccccccccccccccccccceeeeecccccccccccccccccccc
Confidence             334467788742     1  000     0         0    0000      1235566666442    222222222


Q ss_pred             HHHHHHHHHHHhHHhhhhccccccc-hh-hHHHHHHHHHHHHHHHHHHHHHHh
Q 021040          262 TRLVVNVSQAYLAFYVINDLRMGQS-AK-ALVPAIIYICSFIVSILLQVISLK  312 (318)
Q Consensus       262 ~~~~~~~~~~~~~~yl~~~~g~~~~-~~-~~~~~~~~v~~~i~~~~~~~i~~~  312 (318)
                      ..+.......++..++.+..+.++. .. ........++.+++.++.||++||
T Consensus       264 ~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GRr  316 (451)
T PF00083_consen  264 QQFSGINFIFYYSPSIFENAGISNSFLATLILGLVNFLGTLLAIFLIDRFGRR  316 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            2222223334455555566676654 22 222334556777888999999998

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=98.96  E-value=5.1e-08  Score=90.57  Aligned_cols=166  Identities=16%  Similarity=0.046  Sum_probs=99.1

Q ss_pred             chHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHH-HHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCC
Q 021040           33 HMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQI-ADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGC  111 (318)
Q Consensus        33 ~~~~~~~~~~~~~~l~~~l~~~gls~~~~g~i~~~~~i-~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~  111 (318)
                      .+..........++.++|++|.|.++.++|++.....+ ...++.++.|++.||+|+||.. ..+.+..++.....+.  
T Consensus       217 ~~l~~~~~~~~~~~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l-~~~~~~~~~~~~~~~~--  293 (390)
T TIGR02718       217 ALLSAMTAVSGFGLSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTF-ILGVGLAGSLALLWFA--  293 (390)
T ss_pred             HHHHHHHHHHHHHHhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHH-HHHHHHHHHHHHHHHH--
Confidence            34445555566678899999999999999999888765 4556688999999999998874 4454443222211110  


Q ss_pred             CCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 021040          112 MPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVST  191 (318)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~  191 (318)
                      ...... ...... .  +. ...+.+++.+...+...+...+..+++++|++..+..+...++|..+++.+++.+.+.  
T Consensus       294 ~~~~~~-~~~~~~-~--~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~--  366 (390)
T TIGR02718       294 QAAFWL-APGIAV-A--WS-CSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDR--  366 (390)
T ss_pred             HHHccc-CCcHHH-H--HH-HHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence            000000 001111 1  11 1112233444444444455444444446788998998888899988888777766643  


Q ss_pred             cCcccchhHHHHHHHHHHHHHHHHH
Q 021040          192 AKTHADLENQYRWIAYSSIFIGCCF  216 (318)
Q Consensus       192 ~~~~~~~~~~~~~~~~i~~~~~~l~  216 (318)
                              .+|+..+.+.+++.++.
T Consensus       367 --------~G~~~~f~~~~~~~l~a  383 (390)
T TIGR02718       367 --------FGYAGGFLSGTVLAVLA  383 (390)
T ss_pred             --------HccHHHHHHHHHHHHHH
Confidence                    34555665555444443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=98.96  E-value=1.2e-07  Score=87.90  Aligned_cols=148  Identities=11%  Similarity=0.103  Sum_probs=105.0

Q ss_pred             hhhhcccchHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHH
Q 021040           26 VLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFS  105 (318)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~  105 (318)
                      .+.+.+..+..+.......++.++|+++.|.+..++|.+..+..+...+..++.|++.||+|+|+. +.++.+...+.+.
T Consensus       207 ~~~~l~~~~l~~~~~~~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~-l~~~~~~~~~~~~  285 (382)
T TIGR00902       207 NLRFLAAVCLIQGAHAAYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDL-LLISAIACVGRWA  285 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHH-HHHHHHHHHHHHH
Confidence            345555556566777778889999998889999999999999999999999999999999999887 5678887777765


Q ss_pred             HHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHH-HHHHHHHHHHHHHHH
Q 021040          106 SVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRN-AFTMVANLSLYAIAF  184 (318)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~-~~~~~g~~~~~~~~~  184 (318)
                      ...       +.+  +.+..    .....+.++.++...++...++.+. + +++|++..+..+ ....+|..+++.+++
T Consensus       286 ~~~-------~~~--~~~~~----~~~q~l~g~~~~~~~~~~~~~i~~~-~-~~~~~~~q~~~~~~~~g~g~~~g~~~~G  350 (382)
T TIGR00902       286 IIG-------AIE--AFPLI----FLLQILHCGTFAVCHLAAMRYIAAQ-P-GSEIAKLQALYNALAMGGLIAIFTAFAG  350 (382)
T ss_pred             HHH-------hHh--hHHHH----HHHHHHHHHHHHHHHHHHHHHHHhC-C-HhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            432       111  12211    1223456677777766666677765 4 466777777654 345677777777776


Q ss_pred             HHHHh
Q 021040          185 IVFSV  189 (318)
Q Consensus       185 ~l~~~  189 (318)
                      .+.+.
T Consensus       351 ~l~~~  355 (382)
T TIGR00902       351 FIYPT  355 (382)
T ss_pred             HHHHh
Confidence            66654

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK03893 putative sialic acid transporter; Provisional

Probab=98.96  E-value=2.4e-08  Score=95.60  Aligned_cols=132  Identities=11%  Similarity=0.045  Sum_probs=85.3

Q ss_pred             HHHHHHHHHHH-hCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccc
Q 021040           43 WFTYLLLFLTD-IGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTST  121 (318)
Q Consensus        43 ~~~~l~~~l~~-~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~  121 (318)
                      ...++|.|+++ .|.+..++|++.+...+...++.++.|+++||+|||+.+ ..+..+..+....+..  .     .+..
T Consensus       294 ~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~-~~~~~~~~~~~~~~~~--~-----~~~~  365 (496)
T PRK03893        294 IQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAY-VCSLLISQLLIIPVFA--I-----GGAN  365 (496)
T ss_pred             HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH-HHHHHHHHHHHHHHhh--c-----cccH
Confidence            44678899975 499999999999999999999999999999999999884 4454444444332221  1     1111


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021040          122 LKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVF  187 (318)
Q Consensus       122 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~  187 (318)
                      .. ......   .+.+...........+++.|..+ +++|++..++.+....+|..+++.+++.+.
T Consensus       366 ~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~  426 (496)
T PRK03893        366 VW-VLGLLL---FFQQMLGQGISGLLPKLIGGYFD-TEQRAAGLGFTYNVGALGGALAPILGALIA  426 (496)
T ss_pred             HH-HHHHHH---HHHHHHhcccchhhHHHHHhhCC-HHHhhcccchhhhhhhHHHHHHHHHHHHHh
Confidence            11 111111   11221111222344556677765 578999999888888888877766665554

>PRK11010 ampG muropeptide transporter; Validated

Probab=98.94  E-value=7.6e-07  Score=85.47  Aligned_cols=162  Identities=14%  Similarity=0.082  Sum_probs=92.5

Q ss_pred             HHHHHHHHHHHHHHHHh-CCChhHHHHHH-HHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCc
Q 021040           38 ITAACWFTYLLLFLTDI-GLSPRGAAAVM-LSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCR  115 (318)
Q Consensus        38 ~~~~~~~~~l~~~l~~~-gls~~~~g~i~-~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~  115 (318)
                      ........+.++|+.+. |.+..++|++. ....+...++.++.|+++||+||||.. ..+.++.++.....+.  ..  
T Consensus       236 ~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l-~i~~~l~~l~~l~~~~--l~--  310 (491)
T PRK11010        236 LGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRAL-MIFGILQGVSNAGYWL--LS--  310 (491)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHH--HH--
Confidence            33344455677887764 99999999997 466788999999999999999998874 4444443433221110  00  


Q ss_pred             ccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcc
Q 021040          116 ILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTH  195 (318)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~  195 (318)
                      ... .+........    ++..++.+....+..+...++.+ ++.+++..+..+...++|..+++.+.+.+.+.      
T Consensus       311 ~~~-~~~~~l~~~~----~l~~~~~g~~~~~~~a~~~~l~~-~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~------  378 (491)
T PRK11010        311 ITD-KNLYSMGAAV----FFENLCGGMGTAAFVALLMTLCN-KSFSATQFALLSALSAVGRVYVGPVAGWFVEA------  378 (491)
T ss_pred             hcc-ccHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHcC-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence            111 1121111111    12222223233334555566664 35667777777777777766555444444432      


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHH
Q 021040          196 ADLENQYRWIAYSSIFIGCCFVGIF  220 (318)
Q Consensus       196 ~~~~~~~~~~~~i~~~~~~l~~~~~  220 (318)
                          .+|+..+.+.++++++..++.
T Consensus       379 ----~G~~~~f~~~~~~~l~~l~~~  399 (491)
T PRK11010        379 ----HGWPTFYLFSVAAAVPGLLLL  399 (491)
T ss_pred             ----hChHHHHHHHHHHHHHHHHHH
Confidence                357766666655555544443

>PRK10091 MFS transport protein AraJ; Provisional

Probab=98.94  E-value=8.5e-08  Score=88.89  Aligned_cols=151  Identities=12%  Similarity=0.166  Sum_probs=87.2

Q ss_pred             HHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCcc
Q 021040           42 CWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTS  120 (318)
Q Consensus        42 ~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~  120 (318)
                      ...+++++++++. |.++.+.++..+...+...++.++.|+++||+||||. +..+..+.+++...+..       ..+.
T Consensus       217 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~-~~~~~~~~~i~~~~~~~-------~~~~  288 (382)
T PRK10091        217 AWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRI-AAVTDFIIVLALLMLFF-------FGGM  288 (382)
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhH-HHHHHHHHHHHHHHHHH-------HHhh
Confidence            3456778888875 9999999999999999999999999999999999887 45566666666543321       0111


Q ss_pred             chhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchhH
Q 021040          121 TLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLEN  200 (318)
Q Consensus       121 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~  200 (318)
                       .....+..    ++.+.+......+......+..+++++++...  .+....+|..+++.+++.+.+.         ..
T Consensus       289 -~~~~~~~~----~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~Gp~~~G~l~~~---------~~  352 (382)
T PRK10091        289 -KTASLIFA----FICCAGLFALSAPLQILLLQNAKGGELLGAAG--GQIAFNLGSAIGAYCGGMMLTL---------GL  352 (382)
T ss_pred             -HHHHHHHH----HHHHHHHHhhhHHHHHHHHHhCCcchHHHHHH--HHHHHHHHHHHHHHHhHHHHHc---------cc
Confidence             11111111    12333333223332222222222333344332  2445567777777666665542         13


Q ss_pred             HHHHHHHHHHHHHHHH
Q 021040          201 QYRWIAYSSIFIGCCF  216 (318)
Q Consensus       201 ~~~~~~~i~~~~~~l~  216 (318)
                      +|++.+.+.+.+..+.
T Consensus       353 ~~~~~~~~~~~~~~~~  368 (382)
T PRK10091        353 AYNYVALPAALLSFAA  368 (382)
T ss_pred             CcchHHHHHHHHHHHH
Confidence            4666665555444333

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=98.93  E-value=4.8e-09  Score=99.65  Aligned_cols=159  Identities=11%  Similarity=0.051  Sum_probs=99.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhc--cCchHHHH-HHHHHHHHHHHHHhCC
Q 021040           34 MLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRF--GHFKIWHG-AGSVLVAVSFSSVFGG  110 (318)
Q Consensus        34 ~~~~~~~~~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~--Grr~~~l~-~g~~~~~i~~~~~~~~  110 (318)
                      +...........++++|+++.|.+..+.++++++..+...+.+|+.|.++||.  ++|+..+. .+.+..+++.....  
T Consensus       251 ~l~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~--  328 (455)
T TIGR00892       251 VIMFLGFFAPIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCA--  328 (455)
T ss_pred             HHHHHHccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHH--
Confidence            33334444455788899888899999999999999999999999999999973  33333222 22222222222111  


Q ss_pred             CCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021040          111 CMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVS  190 (318)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~  190 (318)
                           ..+  +.+...    +...+.+++.+.......+++.|..+ +++|++..++.+....+|.++++.+++.+.+..
T Consensus       329 -----~~~--~~~~~~----i~~~~~G~~~g~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~  396 (455)
T TIGR00892       329 -----LAG--DYTGLV----IYCIFFGLSFGSVGALLFEVLMDLVG-AQRFSSAVGLVTIVECCAVLIGPPLAGRLVDAT  396 (455)
T ss_pred             -----Hhc--hHHHHH----HHHHHHHHHhchHHHHHHHHHHHHhh-HHHHhhHHhHHHHHHHHHHHccccceeeeehhc
Confidence                 111  122111    12235667777666666777788775 578899999998888888887766655544321


Q ss_pred             ccCcccchhHHHHHHHHHHHHHHHH
Q 021040          191 TAKTHADLENQYRWIAYSSIFIGCC  215 (318)
Q Consensus       191 ~~~~~~~~~~~~~~~~~i~~~~~~l  215 (318)
                               .+|++.+++.+++.++
T Consensus       397 ---------g~~~~~f~~~~~~~li  412 (455)
T TIGR00892       397 ---------KNYKYIFYASGSIVVS  412 (455)
T ss_pred             ---------CCcchHHHHhhHHHHH
Confidence                     1466666555444333

>PRK15075 citrate-proton symporter; Provisional

Probab=98.93  E-value=1.1e-07  Score=89.66  Aligned_cols=139  Identities=14%  Similarity=0.050  Sum_probs=80.6

Q ss_pred             HHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHH-HHHHHhCCCCCCc
Q 021040           38 ITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAV-SFSSVFGGCMPCR  115 (318)
Q Consensus        38 ~~~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i-~~~~~~~~~~~~~  115 (318)
                      ........+.|.|+++. |.+..+.++......+...++.+..|+++||+||||..+ .+....++ .......  .+  
T Consensus       252 ~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~-~~~~~~~~~~~~~~~~--~~--  326 (434)
T PRK15075        252 VSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLI-AFTVLAILTAYPALSW--LV--  326 (434)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH-HHHHHHHHHHHHHHHH--HH--
Confidence            33445667889999885 999999999988899999999999999999999999854 44333222 1111110  00  


Q ss_pred             ccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 021040          116 ILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNA-FTMVANLSLYAIAFIVFS  188 (318)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~-~~~~g~~~~~~~~~~l~~  188 (318)
                        ...+........    .+.+++.+...........|..| +++|+...++.+. +..+++.+++.+.+.+.+
T Consensus       327 --~~~~~~~~~~~~----~~~~~~~g~~~~~~~~~~~e~~p-~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~  393 (434)
T PRK15075        327 --AAPSFARMLAVE----LWLSFLYGSYNGAMVVALTEVMP-AEVRTAGFSLAYSLATAIFGGFTPAISTWLIH  393 (434)
T ss_pred             --cCCchHHHHHHH----HHHHHHHHHHHhhHHHHHHHHCC-CCccchheeHHHHHHHHHHhhhHHHHHHHHHH
Confidence              111111111111    12233444444444556778776 5788888776433 333333344444444443

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=98.92  E-value=1.1e-07  Score=88.64  Aligned_cols=133  Identities=10%  Similarity=0.019  Sum_probs=82.3

Q ss_pred             HHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCcc
Q 021040           42 CWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTS  120 (318)
Q Consensus        42 ~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~  120 (318)
                      .+..+.|.|+.+. |.++.+.|+......+...++.++.|+++||+||||. +..+.+..+++......  .+.  ....
T Consensus       233 ~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~-~~~~~~~~~~g~~~~~~--~~~--~~~~  307 (406)
T PRK15402        233 AWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSL-IRMGLWPMVAGLLLAAL--ATV--ISSH  307 (406)
T ss_pred             HHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH-HHHHHHHHHHHHHHHHH--HHH--cccc
Confidence            3445567777775 9999999998877778888999999999999999887 55676666555443321  110  0111


Q ss_pred             chhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 021040          121 TLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFI  185 (318)
Q Consensus       121 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~  185 (318)
                      +..+..+.    .++.+++.+...++....... .+ +++|+++.+..+....+|..+++.+.+.
T Consensus       308 ~~~~~~~~----~~~~g~g~~~~~~~~~~~~~~-~~-~~~~g~~~~~~~~~~~~~~~~g~~~~~~  366 (406)
T PRK15402        308 AYLWLTAG----LSLYAFGIGLANAGLYRLTLF-SS-DVSKGTVSAAMGMLSMLIFTVGIELSKH  366 (406)
T ss_pred             cHHHHHHH----HHHHHHHHHHHhhhHHHHHhh-hc-cccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence            12221111    134555555544443333322 22 3788999998888877777665544433

>PRK12307 putative sialic acid transporter; Provisional

Probab=98.92  E-value=7.9e-08  Score=90.18  Aligned_cols=131  Identities=14%  Similarity=0.082  Sum_probs=85.1

Q ss_pred             HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccch
Q 021040           43 WFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTL  122 (318)
Q Consensus        43 ~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~  122 (318)
                      ...++|.|+++.|.++.+.+...++..+...+++++.|+++||+|||+. +..+.+..++....+..  .+     ....
T Consensus       250 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~-~~~~~~~~~~~~~~~~~--~~-----~~~~  321 (426)
T PRK12307        250 IFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKT-FSIGLLMSFLFIFPLFR--IP-----QDNY  321 (426)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH-HHHHHHHHHHHHHHHHH--Hc-----cccH
Confidence            4567888888889999999999999999999999999999999999987 45565555444433321  11     1111


Q ss_pred             hHHHHHHHHHHHHHHHHH--hhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021040          123 KVETISYCVFAAIFNVGW--AATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFS  188 (318)
Q Consensus       123 ~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~  188 (318)
                      .  .+..    ++++.+.  ..........+.|..+ ++.|+++.++.+....+|+.+++.+.+.+.+
T Consensus       322 ~--~~~~----~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~  382 (426)
T PRK12307        322 L--LLGA----CLFGLMATNVGVGGLVPKFLYDYFP-LEVRGLGTGLIYNLAATSGTFNSMAATWLGI  382 (426)
T ss_pred             H--HHHH----HHHHHHHhcccHhHHHHHHHHHhCc-HHHHhhhhhHHHHHHhHHHHHHHHHHHHHHH
Confidence            1  1111    1122211  1112223455677775 5789999998887778887777666655543

>TIGR00896 CynX cyanate transporter

Probab=98.91  E-value=1.2e-07  Score=86.72  Aligned_cols=138  Identities=12%  Similarity=0.090  Sum_probs=91.2

Q ss_pred             HHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCccc
Q 021040           38 ITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRIL  117 (318)
Q Consensus        38 ~~~~~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~  117 (318)
                      ........++|.|+++.|.+..+.|.+.++..+...+++++.|+++||+|+||..+.++.++.+++...+..  .     
T Consensus       211 ~~~~~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~--~-----  283 (355)
T TIGR00896       211 GLYYSLIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLF--A-----  283 (355)
T ss_pred             HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHH--h-----
Confidence            344455678899998889999999999999999999999999999999965554455666666665543321  1     


Q ss_pred             CccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021040          118 STSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSV  189 (318)
Q Consensus       118 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~  189 (318)
                      ++.. .  .. .   ..+.+++.+...+...+...+..+++++++...++.+....++..+++.+.+.+.+.
T Consensus       284 ~~~~-~--~~-~---~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~  348 (355)
T TIGR00896       284 PMHG-L--WA-W---ALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDI  348 (355)
T ss_pred             hhhH-H--HH-H---HHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1111 1  11 1   134566666655444445444444456677888877777777777766666555543

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR00891 2A0112 putative sialic acid transporter

Probab=98.91  E-value=5.5e-08  Score=90.05  Aligned_cols=134  Identities=13%  Similarity=0.041  Sum_probs=89.2

Q ss_pred             HHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCcc
Q 021040           42 CWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTS  120 (318)
Q Consensus        42 ~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~  120 (318)
                      ....+++.|+++. |.+..+.+++.+...+...++.++.|+++||+||||.. ..+.+..++.....+.  .    .  .
T Consensus       256 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~-~~~~~~~~~~~~~~~~--~----~--~  326 (405)
T TIGR00891       256 PIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAY-VCSLLAGQLLIIPVFA--I----G--A  326 (405)
T ss_pred             hhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhh-HHHHHHHHHHHHHHHH--h----C--C
Confidence            4446678888875 99999999999999999999999999999999999884 4455444333222221  1    1  1


Q ss_pred             chhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021040          121 TLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSV  189 (318)
Q Consensus       121 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~  189 (318)
                      +.....+..    ++.+++.........+++.|..+ +++|+++.+..+....+|..+++.+.+.+.+.
T Consensus       327 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~  390 (405)
T TIGR00891       327 NVAVLGLGL----FFQQMLVQGIWGILPKHLGEYFP-TDQRAAGLGFTYQLGNLGGALAPIIGALLAQR  390 (405)
T ss_pred             chHHHHHHH----HHHHHHHccchhhHHHHHhhhCC-cchhHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            112111111    22333333333345567778775 57899999998888888888877776666543

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=98.88  E-value=1e-07  Score=90.05  Aligned_cols=168  Identities=9%  Similarity=-0.024  Sum_probs=96.5

Q ss_pred             HHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHH--HHHHhCCCCCC
Q 021040           38 ITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVS--FSSVFGGCMPC  114 (318)
Q Consensus        38 ~~~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~--~~~~~~~~~~~  114 (318)
                      ........++|.|+++. |.++.+.++...+..+...++.++.|+++||+|++|... .+.....+.  ....+.  .  
T Consensus       265 ~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~-~~~~~~~~~~~~~~~~~--~--  339 (438)
T TIGR00712       265 LLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGA-TGVFFMTLVTIAVIVYW--M--  339 (438)
T ss_pred             HHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccH-HHHHHHHHHHHHHHHHH--h--
Confidence            33345567889999986 999999999999999999999999999999997544312 232222111  111110  0  


Q ss_pred             cccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHH-HHHHHHHHHHHHhhccC
Q 021040          115 RILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVAN-LSLYAIAFIVFSVSTAK  193 (318)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~-~~~~~~~~~l~~~~~~~  193 (318)
                        .+..+.+...  ..+  +..+++.............|..+ +++|+++.++.+....+|+ ++++.+.+.+.+.    
T Consensus       340 --~~~~~~~~~~--~~~--~~~g~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~----  408 (438)
T TIGR00712       340 --NPAGNPLVDM--ICM--IVIGFLIYGPVMLIGLHALELAP-KKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF----  408 (438)
T ss_pred             --cCCCchHHHH--HHH--HHHHHHHccHHHHHHHHHHHhcC-hhheeeehhhhchHHHhhhhhhcchhHHHHHHh----
Confidence              0111112111  111  12222211111111234456665 5789999998877666653 4565555555532    


Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 021040          194 THADLENQYRWIAYSSIFIGCCFVGIFLSRTEEP  227 (318)
Q Consensus       194 ~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~  227 (318)
                            .+|.+.+.+.++..+++.+...+..||+
T Consensus       409 ------~g~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (438)
T TIGR00712       409 ------FGWDGGFMVMIGGSILAVILLIVVMIGE  436 (438)
T ss_pred             ------ccchHHHHHHHHHHHHHHHHHHHHHhhc
Confidence                  3466676666655666666666666775

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.87  E-value=4.6e-07  Score=84.49  Aligned_cols=192  Identities=14%  Similarity=0.099  Sum_probs=129.9

Q ss_pred             CchhhhhhcccchHHHHHHHHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHH
Q 021040           22 GRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIG-LSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLV  100 (318)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g-ls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~  100 (318)
                      +.++.+.+.+..+..++.....+.|.+.|++|.| .+....|.+.+++.+...+.-...+++..|+|.|+. +.++.+..
T Consensus       205 k~~~~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~l-l~~a~~~~  283 (400)
T PF03825_consen  205 KNPRFLVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWL-LLLALVAY  283 (400)
T ss_pred             cCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH-HHHHHHHH
Confidence            3455566667777788888889999999999995 888999999999999999999999999999999887 56666665


Q ss_pred             HHHHHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHH-HHHHHHHH
Q 021040          101 AVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAF-TMVANLSL  179 (318)
Q Consensus       101 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~-~~~g~~~~  179 (318)
                      ++=+.+...       ..++ .+.......+-..+.++.++........++.+..| ++.|+++.++.+.. ..+|..++
T Consensus       284 ~vR~~l~a~-------~~~~-~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p-~~~~at~Q~l~~~~~~Glg~~iG  354 (400)
T PF03825_consen  284 AVRWLLYAY-------FSDP-WPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAP-PELRATAQGLYSALSFGLGGAIG  354 (400)
T ss_pred             HHHHHHHHH-------hcCC-cHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCC-ccchHHHHHHHHHHHhhHHHHHH
Confidence            554433221       1111 11111111111124667777777666677777765 57888888876654 56888888


Q ss_pred             HHHHHHHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 021040          180 YAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEP  227 (318)
Q Consensus       180 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~  227 (318)
                      ..+++.+.+.++.    +....|...+.+.+++.++..++..++-||+
T Consensus       355 ~~igG~l~~~~g~----~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~~  398 (400)
T PF03825_consen  355 SLIGGWLYDAFGA----RGMFDWSAVFLVFAVMALVILVLFVILFKPK  398 (400)
T ss_pred             HHHHHHHHHHhcc----hhhhhHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence            8888888876653    1122344444556666666666666666665

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=98.87  E-value=3e-07  Score=86.70  Aligned_cols=126  Identities=13%  Similarity=0.070  Sum_probs=76.4

Q ss_pred             HHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCc
Q 021040           37 DITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCR  115 (318)
Q Consensus        37 ~~~~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~  115 (318)
                      ........+++|.|+++. |.+..+.+...++..+...+.+++.|+++||+||||.. .++.++.++....... ...  
T Consensus       256 ~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~-~~~~~~~~~~~~~~~~-~~~--  331 (432)
T PRK10406        256 SLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSM-LCFGSLAALFTVPILS-ALQ--  331 (432)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHH-HHHHHHHHHHHHHHHH-HHH--
Confidence            444555667899999875 99999999999888888899999999999999999874 4444333222221110 000  


Q ss_pred             ccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHH
Q 021040          116 ILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTM  173 (318)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~  173 (318)
                        ...+..... ...   .+..++.+........+.+|..| ++.|+.+.++.+...+
T Consensus       332 --~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~e~fp-~~~r~t~~g~~~~~g~  382 (432)
T PRK10406        332 --NVSSPYAAF-GLV---MCALLIVSFYTSISGILKAEMFP-AQVRALGVGLSYAVAN  382 (432)
T ss_pred             --cCCcHHHHH-HHH---HHHHHHHHHHHHHHHHHHHHHCC-CCccchhhhHHHHHHH
Confidence              011111111 111   11112222223345567788886 5789999988765433

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=98.87  E-value=1.4e-07  Score=89.82  Aligned_cols=178  Identities=13%  Similarity=0.020  Sum_probs=97.2

Q ss_pred             hhhcccchHHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHH-------HHHHHH
Q 021040           27 LYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIW-------HGAGSV   98 (318)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~-------l~~g~~   98 (318)
                      +...+..+...........++|.|+++. |.+..+.|+..++..+...++.++.|+++||+++||..       +..+..
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~  343 (465)
T TIGR00894       264 WAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIG  343 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence            4445555555566666678899999886 99999999999999999999999999999987654321       111111


Q ss_pred             HHHHHHHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHH
Q 021040           99 LVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLS  178 (318)
Q Consensus        99 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~  178 (318)
                      ....+.....   .+  ... .+........    .+.+.+.+...........|..  ++.++.+.++.+....+|..+
T Consensus       344 ~~~~~~~~~~---~~--~~~-~~~~~~~~~~----~l~~~~~~~~~~~~~~~~~~~~--~~~~g~~~g~~~~~~~l~~~i  411 (465)
T TIGR00894       344 GLGPGIFAYA---LP--YLS-AAFYLTIIIL----TLANAVSSGPLAGVLINSLDLA--PRFLGFIKGITGLPGFIGGLI  411 (465)
T ss_pred             HHHHHHHHHH---HH--HcC-CchHHHHHHH----HHHHHHhhhhhhhhhhchhhcC--hhHHHHHHHHHHHHHHHHHHH
Confidence            1111111110   00  001 1111111111    1222222222223333444544  246777777777776666655


Q ss_pred             HHHHHHHHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhc
Q 021040          179 LYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSR  223 (318)
Q Consensus       179 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~  223 (318)
                      ++.    +.+.+.+.   +...+|...+.+.++..++..++....
T Consensus       412 ~p~----l~g~~~~~---~~~~~~~~~f~~~~~~~~i~~i~~~~~  449 (465)
T TIGR00894       412 AST----LAGNILSQ---DSKNVWLIVFLIMAFVNILCVIFYLIF  449 (465)
T ss_pred             HHH----hhheeeCC---CCchHHHHHHHHHHHHHHHHHHHeeee
Confidence            443    33332210   012458888888777766665555433

>PRK09848 glucuronide transporter; Provisional

Probab=98.86  E-value=2.5e-07  Score=87.62  Aligned_cols=143  Identities=13%  Similarity=0.065  Sum_probs=92.9

Q ss_pred             HHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCc
Q 021040           37 DITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCR  115 (318)
Q Consensus        37 ~~~~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~  115 (318)
                      ...........+.|+++. |.++...++......+...++.|+.++++||+|+|+. +.+|.++.+++...++.      
T Consensus       241 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~-~~~g~~~~~i~~~~~~~------  313 (448)
T PRK09848        241 LISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNT-FLIGALLGTCGYLLFFW------  313 (448)
T ss_pred             HHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH-HHHHHHHHHHHHHHHHH------
Confidence            333334444455566665 8777766665655567778899999999999999988 46677777776554432      


Q ss_pred             ccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCc------cchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021040          116 ILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNS------TSRVVLTSCRNAFTMVANLSLYAIAFIVFSV  189 (318)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~------~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~  189 (318)
                       .+..+.+...    +...+.++|.+...+...++.+|..++.      ++++...+..+....+|..++..+.+.++..
T Consensus       314 -~~~~~~~~~~----~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~  388 (448)
T PRK09848        314 -VSVWSLPVAL----VALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGL  388 (448)
T ss_pred             -cCchhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             1111222111    1123466777777777778888876422      1247778888888889988888877776665


Q ss_pred             hc
Q 021040          190 ST  191 (318)
Q Consensus       190 ~~  191 (318)
                      .+
T Consensus       389 ~G  390 (448)
T PRK09848        389 SG  390 (448)
T ss_pred             cC
Confidence            44

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=98.86  E-value=1.7e-07  Score=89.31  Aligned_cols=142  Identities=15%  Similarity=0.081  Sum_probs=97.5

Q ss_pred             HHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCC
Q 021040           36 NDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPC  114 (318)
Q Consensus        36 ~~~~~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~  114 (318)
                      ..........++|.|+++. |.++.+.|+......+...++.++.|++.||+|||+. +..+..+.+++...+..   . 
T Consensus       267 ~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~-~~~g~~~~~~~~~~~~~---~-  341 (485)
T TIGR00711       267 LGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKL-VTIGLILYAVGFYWRAF---T-  341 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHH-HHHHHHHHHHHHHHHhc---c-
Confidence            3344444556788899886 9999999999999999999999999999999999887 56677766666554431   0 


Q ss_pred             cccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021040          115 RILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFS  188 (318)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~  188 (318)
                       ..++.+.......    ..+.+++.+....+......+..+ +++|+.+.+..+....+|+.++..+.+.+..
T Consensus       342 -~~~~~~~~~~~~~----~~l~g~g~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~  409 (485)
T TIGR00711       342 -FTPDTPFLAIALP----QFIRGFGMGCFFMPLTTIALSGLP-PHKIARGSSLSNFTRQLGGSIGTALITTILT  409 (485)
T ss_pred             -CCCCCCHHHHHHH----HHHHHHHHHHHHHHHHHHHHhcCC-HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             1111122211111    234566666655555555555554 5789999999988888888887766655543

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00900 2A0121 H+ Antiporter protein

Probab=98.85  E-value=1.6e-07  Score=85.56  Aligned_cols=130  Identities=9%  Similarity=0.029  Sum_probs=94.2

Q ss_pred             HHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccchh
Q 021040           45 TYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLK  123 (318)
Q Consensus        45 ~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~  123 (318)
                      .+.|.|.++. |.+..+.|.+.....+...++.++.|+++||+|||+. +..+....+++......       .++ +.+
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~-------~~~-~~~  302 (365)
T TIGR00900       232 ALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMAL-MTGAIFVIGLAILVVGL-------TPP-NFP  302 (365)
T ss_pred             HHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHH-HHHHHHHHHHHHHHHHh-------hch-hHH
Confidence            5667777774 9999999999999999999999999999999999887 45555555555443321       111 122


Q ss_pred             HHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021040          124 VETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFS  188 (318)
Q Consensus       124 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~  188 (318)
                      ..    .+..++.+++.+...+...+++.|..+ +++|++..+..+....+|..+++.+.+.+.+
T Consensus       303 ~~----~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~  362 (365)
T TIGR00900       303 LF----LVLWFAIGVGYGPINVPQGTLLQRRVP-AELLGRVFGAQFSLSHAAWPLGLILAGPLAD  362 (365)
T ss_pred             HH----HHHHHHHHHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11    122245667777777777788888875 5789999999999988888887777666554

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=98.84  E-value=1.3e-07  Score=90.40  Aligned_cols=153  Identities=16%  Similarity=0.033  Sum_probs=87.0

Q ss_pred             HHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCc-----hHHHH-HHHHHHHHHHHHHhCCCCCC
Q 021040           42 CWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHF-----KIWHG-AGSVLVAVSFSSVFGGCMPC  114 (318)
Q Consensus        42 ~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr-----~~~l~-~g~~~~~i~~~~~~~~~~~~  114 (318)
                      ....++|.|+.+. |++..+.+.+.++..+...++.++.|+++||+|||     |.++. ...++.++... .+    + 
T Consensus       270 ~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~-~~----~-  343 (476)
T PLN00028        270 TMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCI-WL----G-  343 (476)
T ss_pred             HHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHH-Hh----c-
Confidence            3456678888876 99999999999999999999999999999999875     22222 22222222222 11    1 


Q ss_pred             cccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCc
Q 021040          115 RILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKT  194 (318)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~  194 (318)
                       ...  +........    ++.+++.........++.+++.  +++|+...++.+.+.++|..+++    .+.+. .   
T Consensus       344 -~~~--~~~~~~~~~----~l~~~~~~~~~~~~~~~~~~~~--~~~~g~~~g~~~~~g~lg~~i~~----~l~~~-~---  406 (476)
T PLN00028        344 -RAN--SLGAAIVVM----ILFSIFVQAACGATFGIVPFVS--RRSLGVISGLTGAGGNVGAVLTQ----LLFFT-G---  406 (476)
T ss_pred             -ccc--hHHHHHHHH----HHHHHHHHHhhhhhcccCcccC--hhhchhhhhhhhccccHHHHHHH----HHHHh-c---
Confidence             111  112111111    1233333323333445555653  35788888887666555555433    22221 1   


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHH
Q 021040          195 HADLENQYRWIAYSSIFIGCCFVGIF  220 (318)
Q Consensus       195 ~~~~~~~~~~~~~i~~~~~~l~~~~~  220 (318)
                         ...+|++.+++.+++.+++.++.
T Consensus       407 ---~~~~y~~~f~~~~~~~~i~~~~~  429 (476)
T PLN00028        407 ---SSYSTETGISLMGVMIIACTLPV  429 (476)
T ss_pred             ---CCccHhhHHHHHHHHHHHHHHHH
Confidence               01357777777776666555444

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=98.84  E-value=3.1e-08  Score=91.04  Aligned_cols=164  Identities=16%  Similarity=0.175  Sum_probs=96.5

Q ss_pred             CChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccchhHHHHHHHHHHHH
Q 021040           56 LSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAI  135 (318)
Q Consensus        56 ls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  135 (318)
                      ++....+.+..+..+++.++|+++|+++||+|||+++ ...+++++++....-   .+.+..   +....+.+.+.++.+
T Consensus        81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vY-G~~liImIi~t~~~~---~s~~~~---~~~~~m~~L~~~R~~  153 (538)
T KOG0252|consen   81 YPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVY-GKELIIMIICSALSG---LSVGTT---SPLGVMMTLCFFRFL  153 (538)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhh-hHHHHHHHHHHHHhc---cCCCCC---CCcchhhHHHHHHHH
Confidence            6778889999999999999999999999999999996 456777777765332   232221   111122333445567


Q ss_pred             HHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-c-c---cchhHHHHHHHHHHH
Q 021040          136 FNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAK-T-H---ADLENQYRWIAYSSI  210 (318)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~-~-~---~~~~~~~~~~~~i~~  210 (318)
                      .|+|.+.=.+-..+..+|.+. .+.|+...+..-....+|.+.++.++..+..-+... + .   ......||..+.+.+
T Consensus       154 LGiGIGGDYPlSAtI~SE~an-~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~  232 (538)
T KOG0252|consen  154 LGIGIGGDYPLSATIMSESAN-KKTRGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGA  232 (538)
T ss_pred             hhccccCCCcchHHHhhhhhh-hccccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHH
Confidence            888887755544555666653 567876655444444445544444443333322211 0 0   011245776655544


Q ss_pred             HHHHHHHHHHHhcccccc
Q 021040          211 FIGCCFVGIFLSRTEEPR  228 (318)
Q Consensus       211 ~~~~l~~~~~~~~~~e~~  228 (318)
                      .+++ ..+..-...||++
T Consensus       233 vpa~-~~ly~Rl~M~Et~  249 (538)
T KOG0252|consen  233 VPAL-LVLYFRLKMPETA  249 (538)
T ss_pred             HHHH-HHHHhhhcCCcch
Confidence            4433 3344445567764

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.82  E-value=1.8e-07  Score=88.28  Aligned_cols=171  Identities=15%  Similarity=0.068  Sum_probs=112.4

Q ss_pred             HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccch
Q 021040           43 WFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTL  122 (318)
Q Consensus        43 ~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~  122 (318)
                      +..|-..++++.|++..++-++.....+...+.......+.||.|||+. ++.+...+.+..+.+..   ..-+......
T Consensus       289 i~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpL-ll~~~~~~~~~~~~~~~---~~~l~~~~~~  364 (485)
T KOG0569|consen  289 IFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPL-LLISLSLMAVALLLMSI---ALFLSNSFGS  364 (485)
T ss_pred             eHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHH-HHHHHHHHHHHHHHHHH---HHHHHHHhhh
Confidence            3345556666679999999999999999999999999999999999876 56677666666544321   1001111101


Q ss_pred             hHHHHHHHHHHHHHHHHHhhhHHhHh-hhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchhHH
Q 021040          123 KVETISYCVFAAIFNVGWAATQVAHM-SMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQ  201 (318)
Q Consensus       123 ~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~  201 (318)
                      +..+. .+...+++.++++....|.. -+.+|+++ ++.|..+.++....+++.+.+......|+-..++         +
T Consensus       365 ~~~y~-~i~~~~~~~~~f~~G~gpi~~fi~aELf~-~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g---------~  433 (485)
T KOG0569|consen  365 WLSYL-CIAAIFLFIISFAIGPGPIPWFIGAELFP-QSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIG---------P  433 (485)
T ss_pred             HHHHH-HHHHHHHHHHhhhcCCCchhHHHHHHhCC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------c
Confidence            11111 01111234445544433433 35688886 5789999999888888888877766655554433         1


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcccccccc
Q 021040          202 YRWIAYSSIFIGCCFVGIFLSRTEEPRLK  230 (318)
Q Consensus       202 ~~~~~~i~~~~~~l~~~~~~~~~~e~~~~  230 (318)
                        +.++++.+.+.++.+..++.+||++.+
T Consensus       434 --~~filF~i~~~~~~i~~~~~lPETkgr  460 (485)
T KOG0569|consen  434 --YVFILFVIPLAIFLIYLYRYLPETKGR  460 (485)
T ss_pred             --hhhHHHHHHHHHHHHHHHHhCcccCCC
Confidence              456677777888888888999998644

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=98.82  E-value=2.1e-07  Score=89.41  Aligned_cols=137  Identities=20%  Similarity=0.141  Sum_probs=96.0

Q ss_pred             HHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccC
Q 021040           40 AACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILS  118 (318)
Q Consensus        40 ~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~  118 (318)
                      ......++|.|+++. |.|+.+.|+.+....+...++.++.|++.||+|||+. +..|.++.+++...+..  ..    .
T Consensus       275 ~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~-~~~g~~~~~~~~~~l~~--~~----~  347 (495)
T PRK14995        275 LVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLV-ATGGMALSALSFYGLAM--TD----F  347 (495)
T ss_pred             HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHH-HHHHHHHHHHHHHHHHH--hc----C
Confidence            334446778888887 9999999999999999999999999999999999876 56677776666543321  11    1


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021040          119 TSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFS  188 (318)
Q Consensus       119 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~  188 (318)
                      ..+.+....    ..++.+++.+....+......+..+ +++++.+.+..+...++|..+|..+.+.+..
T Consensus       348 ~~~~~~~~~----~~~l~G~g~g~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~  412 (495)
T PRK14995        348 STQQWQAWG----LMALLGFSAASALLASTSAIMAAAP-PEKAAAAGAIETMAYELGAGLGIAIFGLLLS  412 (495)
T ss_pred             CCchHHHHH----HHHHHHHhHHHHHHHHHHHHHhcCC-HHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            111221111    1235677777766666666555554 5788899999888888888887776665553

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=98.81  E-value=7.7e-07  Score=82.49  Aligned_cols=144  Identities=10%  Similarity=0.075  Sum_probs=93.8

Q ss_pred             cccchHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhC
Q 021040           30 GSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFG  109 (318)
Q Consensus        30 ~~~~~~~~~~~~~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~  109 (318)
                      .+..+..+........++++|++|.|.+..+.|.+.++..+...+..++.|++.||+|+|+. +..+.+..++++.....
T Consensus       211 ~~~~~l~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~-l~~~~~~~~~~~~~~~~  289 (382)
T PRK11128        211 LLCVSLLQGSHAAYYGFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDL-LLLSAICGVVRWGLMGS  289 (382)
T ss_pred             HHHHHHHHHHhHhHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH-HHHHHHHHHHHHHHHHh
Confidence            33334444445556678889998889999999999999999999999999999999999988 56677776666543321


Q ss_pred             CCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 021040          110 GCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRN-AFTMVANLSLYAIAFIVFS  188 (318)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~-~~~~~g~~~~~~~~~~l~~  188 (318)
                             .+  +.+...    +..++.+++++...+....+..+. + ++++++..+..+ ....+|..+++.+++.+.+
T Consensus       290 -------~~--~~~~~~----~~~~l~g~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~  354 (382)
T PRK11128        290 -------TT--ALPWLI----VIQILHCGTFTVCHLAAMRYIAAR-P-GSEVIRLQALYSALAMGGSIAIMTVLSGFLYQ  354 (382)
T ss_pred             -------hh--hHHHHH----HHHHHHHHHHHHHHHHHHHHHHHC-C-HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   11  222211    222456666666655555555553 2 345566666654 3345565666666666654


Q ss_pred             h
Q 021040          189 V  189 (318)
Q Consensus       189 ~  189 (318)
                      .
T Consensus       355 ~  355 (382)
T PRK11128        355 H  355 (382)
T ss_pred             h
Confidence            3

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=98.81  E-value=1e-07  Score=89.38  Aligned_cols=159  Identities=10%  Similarity=-0.005  Sum_probs=93.9

Q ss_pred             cccchHHHHHHHHHHHHHHHHHHHh--CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHH
Q 021040           30 GSGHMLNDITAACWFTYLLLFLTDI--GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSV  107 (318)
Q Consensus        30 ~~~~~~~~~~~~~~~~~l~~~l~~~--gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~  107 (318)
                      .+..+..........+++|.|+++.  |.+..+.+.......+...++.++.|+++||+||||..+....+...+++.+.
T Consensus       248 ~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~  327 (412)
T TIGR02332       248 TLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGWLLA  327 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHHHH
Confidence            3333334444556678999999885  67889999999999999999999999999999988764433333333333221


Q ss_pred             hCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021040          108 FGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVF  187 (318)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~  187 (318)
                      .    .   ..+  ........    .+..++.............|.. ++++|+.+.++.+...++|+++++.+.+.+.
T Consensus       328 ~----~---~~~--~~~~~~~~----~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~  393 (412)
T TIGR02332       328 S----A---TDH--NLIQLLGI----IMASMGSFSAMAIFWTTPDQSI-SLQARAIAIAVINATGNIGSALSPFLIGILK  393 (412)
T ss_pred             H----h---cCC--HHHHHHHH----HHHHHHhhhhhhHHHhhccccc-chHHHHHHHHHHHHhhhhhhhhhhhhccccc
Confidence            1    0   111  11111111    1112222221222222333444 4578999999999988888877765554444


Q ss_pred             HhhccCcccchhHHHHHHHHHHHH
Q 021040          188 SVSTAKTHADLENQYRWIAYSSIF  211 (318)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~i~~~  211 (318)
                      +..         .+|++.+.+.++
T Consensus       394 ~~~---------g~~~~~~~~~~~  408 (412)
T TIGR02332       394 DAT---------GSFNSGLWFVAA  408 (412)
T ss_pred             ccC---------CCCchhHHHHHH
Confidence            321         246666655443

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=98.81  E-value=1.1e-07  Score=85.42  Aligned_cols=256  Identities=11%  Similarity=0.049  Sum_probs=149.6

Q ss_pred             HHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhh-----hccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCcc
Q 021040           46 YLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELID-----RFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTS  120 (318)
Q Consensus        46 ~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsD-----r~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~  120 (318)
                      -+|..++.-|.|-++.+....++.-.  -...++..+.|     |+||||.|+.-+..+.+..++.+-. +++.+...+.
T Consensus        52 ~iP~lL~ak~vSyt~~a~fS~ay~P~--sLKllWaPiVDs~y~k~~GrrksWvvp~q~llG~~mllLs~-~v~~~~g~ng  128 (510)
T KOG3574|consen   52 AIPLLLQAKGVSYTSQAIFSFAYWPF--SLKLLWAPIVDSVYSKRFGRRKSWVVPCQYLLGLFMLLLSY-LVDRGLGGNG  128 (510)
T ss_pred             hhHHHhcCCCcchhhhhhhhhhhhHH--HHHHHHHhhhHHHHHHhhccccceeeehHHHHHHHHHHHhh-CCCcccccCC
Confidence            34555554477777766654443322  34567888888     9999999987776665555544422 3444443121


Q ss_pred             -chhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhccCc
Q 021040          121 -TLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFS-----VSTAKT  194 (318)
Q Consensus       121 -~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~-----~~~~~~  194 (318)
                       .+...+.+..+  .+..+..+..+++...+.-.+.. +++-+-++..+..+.+.|.+++..+.-.+-.     .+..+-
T Consensus       129 ~~p~v~~lt~~f--~LLnflaAtQDIAVDgwALtmLs-~e~lgyaST~q~Vg~~~GyfL~~~ifLaL~s~dF~N~y~rs~  205 (510)
T KOG3574|consen  129 GLPNVVALTLLF--LLLNFLAATQDIAVDGWALTMLS-RENLGYASTCQSVGQTAGYFLGNVVFLALESPDFCNTYLRSI  205 (510)
T ss_pred             CCcchHHHHHHH--HHHHHHHhhhhhhhhHHHHHhcC-HhhcCchhHHHHHHHhhhHHhhcceeeEecChhhhhHHHhcC
Confidence             12112222221  34667777788888877666553 4667777777777777777766543211110     001111


Q ss_pred             ccc----hhHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCCCchHHHH---HHHHhcHHHHHHHHHHHHHHHHHH
Q 021040          195 HAD----LENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISW---AYWFKKILYYQVALVYMLTRLVVN  267 (318)
Q Consensus       195 ~~~----~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~  267 (318)
                      +.|    ...+|-|.   -+.+.++...+..+.-+|++++..+|.+.+..+.+   ++++|-|+.+.++......-+++.
T Consensus       206 P~~~g~ItL~gy~~f---wg~~~~vat~Lv~~~kke~~~~~~~e~~~~i~~~yk~l~~vLklk~v~~la~i~lt~K~gf~  282 (510)
T KOG3574|consen  206 PLDQGFITLAGYLWF---WGALFIVATTLVALLKKENDESVDEELELGIHESYKLLRDVLKLKSVRWLAGILLTGKLGFQ  282 (510)
T ss_pred             cCccceEEhhHHHHH---HHHHHHHHHHHHHHhcCCCchhhhhhhhcCHHHHHHHHHHHHcCccHHHHHHHHHHHHHHhh
Confidence            111    01223222   23333344444445555654443333444555544   577788999999998899999999


Q ss_pred             HHHHHhHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 021040          268 VSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQVISL  311 (318)
Q Consensus       268 ~~~~~~~~yl~~~~g~~~~~~~~~~~~~~v~~~i~~~~~~~i~~  311 (318)
                      ......+.-+.|. |+++...+..........++.+...+|++.
T Consensus       283 a~da~t~LkLle~-Gv~ke~Lal~~v~~~plqI~l~~~~gk~ta  325 (510)
T KOG3574|consen  283 AADALTSLKLLEH-GVPKEELALIAVPLVPLQIALPLYIGKWTA  325 (510)
T ss_pred             hhhhccchHHHHc-CCChhHheeeeeehhhHHHhhhhhheeecC
Confidence            8888888888874 888776665555555666777777777665

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.80  E-value=2.4e-07  Score=80.31  Aligned_cols=129  Identities=13%  Similarity=0.150  Sum_probs=92.3

Q ss_pred             HHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccc
Q 021040           43 WFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTST  121 (318)
Q Consensus        43 ~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~  121 (318)
                      +.+.-+.++++- |+|+...+.+.+.--...++.+|+.|.++||+||+..|+..+.+...++=..+++       . .-+
T Consensus       283 Fi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~F-------t-~ls  354 (459)
T KOG4686|consen  283 FITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFF-------T-FLS  354 (459)
T ss_pred             HhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHh-------h-hcc
Confidence            334456777775 9999999999999888999999999999999999988876666665555333332       0 011


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021040          122 LKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVF  187 (318)
Q Consensus       122 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~  187 (318)
                      ++   +..    .+.|..++...-.+...++.+.| +++-+++.+..+...|+|-.+.+++.+.+.
T Consensus       355 Py---~~m----~~lGLsysllAcslWP~va~~vp-E~qLGTaygf~qsIqNLgla~i~Iiag~i~  412 (459)
T KOG4686|consen  355 PY---TSM----TFLGLSYSLLACSLWPCVASLVP-EEQLGTAYGFIQSIQNLGLAFIPIIAGFIA  412 (459)
T ss_pred             HH---HHH----HHHhhhHHHHHHHHhhhhhhhCC-HHHhcchHHHHHHHHhhhhhHHhhhhheee
Confidence            22   111    23566676666566777777775 578899999999999999877666655544

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=98.79  E-value=1.2e-06  Score=83.57  Aligned_cols=187  Identities=13%  Similarity=0.075  Sum_probs=119.3

Q ss_pred             hhhhhcccchHHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCc--hHHHHHHHHHH-
Q 021040           25 SVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHF--KIWHGAGSVLV-  100 (318)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr--~~~l~~g~~~~-  100 (318)
                      ....|.++.+...-..+.+..+...|.++. |++..+...+..+..+..+++..++|++.||+|.|  +. +..+.+.. 
T Consensus       282 ~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~-l~~~l~~~~  360 (477)
T PF11700_consen  282 QLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRT-LLISLILWI  360 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHH-HHHHHHHHH
Confidence            344555555444444444556677888875 99999999999999999999999999999999988  66 44454443 


Q ss_pred             HHHHHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHH
Q 021040          101 AVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLY  180 (318)
Q Consensus       101 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~  180 (318)
                      .+....++. -.+.... ..+.+. +   .+..++.|++.+..+....++.+++.|+ ++.+...++.....-....+|+
T Consensus       361 ~i~~~g~~G-~~~~~~g-~~~~~~-f---~~~a~~~G~~~G~~qs~sRs~~~~LiP~-g~e~efFgly~i~gk~ss~lGP  433 (477)
T PF11700_consen  361 IIPLYGLFG-FWPSFFG-LKSPWE-F---WVLAVLIGLFMGGIQSASRSLFSRLIPP-GREAEFFGLYAITGKASSWLGP  433 (477)
T ss_pred             HHHHHHHHH-hhhcccC-cccHHH-H---HHHHHHHHHHhhhHHHHHHHHHHHhCCC-chhhHHHHHHHHHHHHHHHHHH
Confidence            223222220 0010001 112232 1   2223467788888888889999999975 5568889998888888888887


Q ss_pred             HHHHHHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhccccccc
Q 021040          181 AIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRL  229 (318)
Q Consensus       181 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~  229 (318)
                      .+.+.+....+         +.|+.+....++.+ ..++.+..+++++.
T Consensus       434 ll~g~i~~~tg---------~~r~g~~~l~~lf~-~gl~ll~~v~~~~g  472 (477)
T PF11700_consen  434 LLFGLITDATG---------SQRYGFLFLLVLFL-IGLILLFFVDVEKG  472 (477)
T ss_pred             HHHHHHHHHhC---------CchhHHHHHHHHHH-HHHHHHhhccchhh
Confidence            77666654422         34555544443333 33444466766543

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PF12832 MFS_1_like: MFS_1 like family

Probab=98.79  E-value=3.7e-08  Score=69.41  Aligned_cols=56  Identities=27%  Similarity=0.447  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHH
Q 021040           39 TAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHG   94 (318)
Q Consensus        39 ~~~~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~   94 (318)
                      ......+|++.|+++.|+|+.++|++.++..+...+++|++|.++||+||+|..+.
T Consensus        15 ~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~   70 (77)
T PF12832_consen   15 ALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILL   70 (77)
T ss_pred             HHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHH
Confidence            34567799999999999999999999999999999999999999999999998544

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.77  E-value=3.9e-07  Score=85.86  Aligned_cols=149  Identities=19%  Similarity=0.185  Sum_probs=105.1

Q ss_pred             ccchHHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhC
Q 021040           31 SGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFG  109 (318)
Q Consensus        31 ~~~~~~~~~~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~  109 (318)
                      ...+...+...+.+++.+.|.++. |.+ .+.+.+..+..+...+..|++++++||+||||.+ ..+..+.+++...++.
T Consensus       232 ~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~-~~~~~~~~~~~~~~~~  309 (428)
T PF13347_consen  232 LAFFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVY-IIGLLLAALGFLLLFF  309 (428)
T ss_pred             HHHHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeeh-hhhHHHHHHHHHHHHH
Confidence            334555566666777777777876 666 6778888889999999999999999999999985 5677777777665542


Q ss_pred             CCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCcc------chhHHHHHHHHHHHHHHHHHHHHH
Q 021040          110 GCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNST------SRVVLTSCRNAFTMVANLSLYAIA  183 (318)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~------~R~~~~~~~~~~~~~g~~~~~~~~  183 (318)
                        .     +..+.+..    .+..++.+++.+.......++.+|..+..|      +.+...+..+....++..++..+.
T Consensus       310 --~-----~~~~~~~~----~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~  378 (428)
T PF13347_consen  310 --L-----GPGSPWLV----LILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIV  378 (428)
T ss_pred             --H-----HhhhHHHH----HHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHH
Confidence              1     11122222    222345778888877777888999875322      236677888888888888888877


Q ss_pred             HHHHHhhcc
Q 021040          184 FIVFSVSTA  192 (318)
Q Consensus       184 ~~l~~~~~~  192 (318)
                      +.++...+.
T Consensus       379 g~~l~~~Gy  387 (428)
T PF13347_consen  379 GLLLALVGY  387 (428)
T ss_pred             HHHHHHhCc
Confidence            777765443

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=98.77  E-value=2.9e-07  Score=86.86  Aligned_cols=60  Identities=12%  Similarity=0.190  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHH
Q 021040           43 WFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSF  104 (318)
Q Consensus        43 ~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~  104 (318)
                      ...++|.|+++. .+.........+..+...+..|++|+++||+|+||. +.++.+..+++.
T Consensus       271 ~s~~lp~~~~~~-~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~v-l~~~~i~~~i~~  330 (462)
T PRK15034        271 FSAGFAMLAKTQ-FPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRV-TLINFIFMAIFS  330 (462)
T ss_pred             HHHHHHHHHHHH-cChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHH-HHHHHHHHHHHH
Confidence            444677777663 444444444556778899999999999999999988 455665555554

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=98.77  E-value=4.2e-07  Score=95.81  Aligned_cols=130  Identities=14%  Similarity=0.141  Sum_probs=92.0

Q ss_pred             HHHHHHHHHHHHHHh-CCChh-HHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCccc
Q 021040           40 AACWFTYLLLFLTDI-GLSPR-GAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRIL  117 (318)
Q Consensus        40 ~~~~~~~l~~~l~~~-gls~~-~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~  117 (318)
                      ......+++.|+.+. |.+.. +.|++.+...++..+++++.|+++||+++|+. +.++.++.+++...+..       .
T Consensus       248 ~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~-~~~~~~~~~~~~~~~~~-------~  319 (1146)
T PRK08633        248 SQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGL-VPLGALGLALSLFLLPT-------A  319 (1146)
T ss_pred             HHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccc-hhHHHHHHHHHHHHHHH-------h
Confidence            344556778888875 99999 99999999999999999999999999998887 45566665555443321       1


Q ss_pred             CccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHH
Q 021040          118 STSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAF  184 (318)
Q Consensus       118 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~  184 (318)
                      .  +.....    +..++.+++.+...++..+++.+..+ +++|+++.+..+....+|.+++..+++
T Consensus       320 ~--~~~~~~----~~~~~~g~~~~~~~~~~~~~~~~~~p-~~~rg~~~~~~~~~~~lg~~~~~~~~~  379 (1146)
T PRK08633        320 P--SLASVL----VLFFLFGFSAGLFIVPLNALIQFRAP-EKELGKVLAANNFLQNVGMLLFLALTT  379 (1146)
T ss_pred             h--hHHHHH----HHHHHHHHHHHHhhHHHHHHHhhcCC-ccchhhhhHHHHHHHHHHHHHHHHHHH
Confidence            1  122111    11234566667666677778777765 578999999988888888766655543

>TIGR00895 2A0115 benzoate transport

Probab=98.75  E-value=3.7e-07  Score=84.15  Aligned_cols=132  Identities=16%  Similarity=0.015  Sum_probs=87.5

Q ss_pred             HHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCccc
Q 021040           38 ITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRIL  117 (318)
Q Consensus        38 ~~~~~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~  117 (318)
                      ........++|.+.++.|.+..+.+....+..+...++.++.|+++||+|||+. +. +.....+....++.      ..
T Consensus       264 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~-~~~~~~~~~~~~~~------~~  335 (398)
T TIGR00895       264 VGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVT-AL-LLLLGAVFAVLVGS------TL  335 (398)
T ss_pred             HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHH-HH-HHHHHHHHHHHHHH------Hh
Confidence            344445566675555569999999999999999999999999999999998843 33 33333333222220      01


Q ss_pred             CccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHH
Q 021040          118 STSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAF  184 (318)
Q Consensus       118 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~  184 (318)
                      .  +.....    +..++.+++.+...+...++..|..+ +++|++..++.+....+|..+++.+.+
T Consensus       336 ~--~~~~~~----~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~~g~~~g~~~~G  395 (398)
T TIGR00895       336 F--SPTLLL----LLGAIAGFFVNGGQSGLYALMALFYP-TAIRATGVGWAIGIGRLGAIIGPILAG  395 (398)
T ss_pred             h--CHHHHH----HHHHHHHHHHHHHHHHHHHHHhhcCC-HHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            1  112111    11234666777667777788888875 578999999888888888776655443

>PRK10054 putative transporter; Provisional

Probab=98.68  E-value=1.1e-06  Score=82.00  Aligned_cols=175  Identities=9%  Similarity=0.063  Sum_probs=102.5

Q ss_pred             hcccchHHHHHHHHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHH
Q 021040           29 YGSGHMLNDITAACWFTYLLLFLTDI---GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFS  105 (318)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~l~~~l~~~---gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~  105 (318)
                      +.+..+...........+++.|+.+.   +.+...++.++....+.....+++.|.+.||+|+|+. +..+.++.+++..
T Consensus       211 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-l~~~~~~~~~~~~  289 (395)
T PRK10054        211 FTCSGFLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPL-MTAGTLCFVIGLV  289 (395)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhH-HHHHHHHHHHHHH
Confidence            33333433344444444566666542   6677888989988888888889999999999999887 5566666666554


Q ss_pred             HHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 021040          106 SVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFI  185 (318)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~  185 (318)
                      ....       .. ++.+...    +...+.+++.....+...+.+.+..| ++.|++..+..+ ...+|..+++.+++.
T Consensus       290 ~~~~-------~~-~~~~~~~----~~~~~~~~g~~~~~p~~~~~~~~~~p-~~~~~~~~~~~~-~~~~G~~~Gp~~~G~  355 (395)
T PRK10054        290 GFIF-------SG-NSLLLWG----MSAAVFTVGEIIYAPGEYMLIDHIAP-PGMKASYFSAQS-LGWLGAAINPLVSGV  355 (395)
T ss_pred             HHHH-------cc-hHHHHHH----HHHHHHHHHHHHHHhhHHHHHHHhCC-cccceehHhHHH-HHHHHHHHHHHHHHH
Confidence            3321       11 1122111    11234566665555555667777765 467777766544 455677777777767


Q ss_pred             HHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 021040          186 VFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPR  228 (318)
Q Consensus       186 l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~  228 (318)
                      +.+..          ++...+++.+....+..++.....+|++
T Consensus       356 l~~~~----------g~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (395)
T PRK10054        356 ILTTL----------PPWSLFVILALAIVAAWLLMLKGMRARP  388 (395)
T ss_pred             HHHHc----------ChhhHHHHHHHHHHHHHHHHHhccccCc
Confidence            66543          3444555544444444444444444543

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=98.67  E-value=6e-07  Score=84.83  Aligned_cols=197  Identities=13%  Similarity=0.032  Sum_probs=110.5

Q ss_pred             HHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHh
Q 021040           67 SGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVA  146 (318)
Q Consensus        67 ~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (318)
                      ...+...+.+|..|.++||||||.+ +........+.-..+-        .  .. ++.++   +  .-...++++....
T Consensus        70 ~~~~~~~i~s~~iG~lSD~~grk~~-L~~~~~~~~l~~~~~~--------~--~~-~~~~~---~--~~l~g~~~~~~s~  132 (463)
T KOG2816|consen   70 TAGLLTLISSPLIGALSDRYGRKVV-LLLPLFGTILPALCLL--------F--QG-YWFFL---L--LGLSGGFSAIFSV  132 (463)
T ss_pred             hhHHHHHHHHhhhHHhhhhhhhhhh-HHHHHHHHHHhHHHHH--------H--HH-HHHhh---h--cccccchhhhhhh
Confidence            3467788999999999999999987 4444444333321110        0  01 11111   0  1122344445556


Q ss_pred             HhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 021040          147 HMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEE  226 (318)
Q Consensus       147 ~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e  226 (318)
                      ..++++|.+. .++|....++.+.....+..+++.+++-+...          .++-..+.+.++..++..+.....+||
T Consensus       133 ~~a~vadis~-~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~----------~~~a~~f~ia~~~~~~~~~y~~~~l~E  201 (463)
T KOG2816|consen  133 GFAYVADISS-EEERSSSIGLLSGTFGAGLVIGPALGGYLVKF----------LGIALVFLIAAASGILSLLYMLLFLPE  201 (463)
T ss_pred             hhhheeeccc-hhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh----------cCchHHHHHHHHHHHHHHHHHhhcccc
Confidence            6788999986 46888888877765555555555444333322          234456667776777776677778898


Q ss_pred             cccccccC---------C---CCchHHHHHHHH---hcHHHHHHHHHHHHHHHHHHHHHH-HhHHhhhhccccccchhhH
Q 021040          227 PRLKMGLR---------G---NSHARISWAYWF---KKILYYQVALVYMLTRLVVNVSQA-YLAFYVINDLRMGQSAKAL  290 (318)
Q Consensus       227 ~~~~~~~~---------~---~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~yl~~~~g~~~~~~~~  290 (318)
                      +..++++.         .   .....+.++...   ++|..+.++...++.......-.. ..+.|+....+.++...+.
T Consensus       202 sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~  281 (463)
T KOG2816|consen  202 SLQEKERSDATLRELTPGSLDSSHVADAFQSLTKVGPDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSD  281 (463)
T ss_pred             ccCccccccccccccCCCcccchhhhhhhhhhcccCCCccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHH
Confidence            75443221         0   111222233322   345555555555555444332222 4478888888988765553


Q ss_pred             H
Q 021040          291 V  291 (318)
Q Consensus       291 ~  291 (318)
                      +
T Consensus       282 ~  282 (463)
T KOG2816|consen  282 L  282 (463)
T ss_pred             H
Confidence            3

>TIGR00898 2A0119 cation transport protein

Probab=98.67  E-value=2.4e-06  Score=82.13  Aligned_cols=149  Identities=11%  Similarity=-0.024  Sum_probs=87.1

Q ss_pred             HHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccchhHHHHHHHH
Q 021040           52 TDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCV  131 (318)
Q Consensus        52 ~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (318)
                      .+.+.+....   ..+..+...++.++.+.++||+|||+. +.++.++.+++.+.+..  .+     +..........  
T Consensus       351 ~~~~~~~~~~---~~~~~~~~i~~~~~~~~l~dr~grr~~-~~~~~~~~~~~~l~~~~--~~-----~~~~~~~~~~~--  417 (505)
T TIGR00898       351 GNLGGNIYLD---LFISGLVELPAKLITLLLIDRLGRRYT-MAASLLLAGVALLLLLF--VP-----VDLYFLRTALA--  417 (505)
T ss_pred             cccCCChHHH---HHHHHHHHHHHHHHHHHHHHHhCCHHH-HHHHHHHHHHHHHHHHH--cC-----CCchHHHHHHH--
Confidence            3345554333   334456677888899999999999988 55666666666554431  11     11112111111  


Q ss_pred             HHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchhHHHHHHHHHHHH
Q 021040          132 FAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIF  211 (318)
Q Consensus       132 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~  211 (318)
                        .+.+++.+........+.+|..| ++.|+++.++.+....+|.++++.+.+ +.           ..++...+.+.++
T Consensus       418 --~~~~~~~~~~~~~~~~~~~e~~p-~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~-----------~~~~~~~~~~~~~  482 (505)
T TIGR00898       418 --VLGKFGITSAFQMVYLYTAELYP-TVVRNLGVGVCSTMARVGSIISPFLVY-LG-----------EKWLFLPLVLFGG  482 (505)
T ss_pred             --HHHHHHHHHHHHHHHHHhccccc-HHHHhhhHhHHHHHHHHHHHHHhHHHH-HH-----------HHHHhhHHHHHHH
Confidence              22333333334445567788876 468999999888888888777665543 21           1234455666666


Q ss_pred             HHHHHHHHHHhccccccc
Q 021040          212 IGCCFVGIFLSRTEEPRL  229 (318)
Q Consensus       212 ~~~l~~~~~~~~~~e~~~  229 (318)
                      .+++..+.. +++||++.
T Consensus       483 ~~~~~~~~~-~~lpet~~  499 (505)
T TIGR00898       483 LALLAGILT-LFLPETKG  499 (505)
T ss_pred             HHHHHHHHH-HcCcCCCC
Confidence            665555444 45688654

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=98.66  E-value=1.3e-06  Score=81.24  Aligned_cols=167  Identities=11%  Similarity=-0.042  Sum_probs=96.8

Q ss_pred             ccchHHHHHHHHHHHHHHHHHHHh----CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHH
Q 021040           31 SGHMLNDITAACWFTYLLLFLTDI----GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSS  106 (318)
Q Consensus        31 ~~~~~~~~~~~~~~~~l~~~l~~~----gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~  106 (318)
                      +..+.............+.|+++.    +.+..+.|.+.++..+...+..+..|++.||+||||. +.++.++.++.+..
T Consensus       222 l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~-l~~~~~l~~l~~~~  300 (396)
T TIGR00882       222 LYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNA-LLIAGTIMSVRIIG  300 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchh-HHHHHHHHHHHHHH
Confidence            333333333334444567777764    4566788999999999999999999999999999987 45666666665543


Q ss_pred             HhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHH-HHHHHHHHHHHHHHHHHH
Q 021040          107 VFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSC-RNAFTMVANLSLYAIAFI  185 (318)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~-~~~~~~~g~~~~~~~~~~  185 (318)
                      ...       .+  +.+...+.    .++.+++.............+..+ ++.|+...+. .+....+|..+++.+.+.
T Consensus       301 ~~~-------~~--~~~~~~~~----~~l~g~~~~~~~~~~~~~~~~~~~-~~~~at~~~~~~~~~~~lg~~~~~~l~G~  366 (396)
T TIGR00882       301 SSF-------AT--TALEVVIL----KMLHAFEVPFLLVGCFKYITSQFD-VRLSATIYLIGFQFAKQLAMIFLSTLAGN  366 (396)
T ss_pred             HHh-------cC--ChHHHHHH----HHHHHHHHHHHHHHHHHHHHHhCC-cceEEEeehHHHHHHHHHHHHHHHHhHHH
Confidence            221       11  12222211    233445444333222233333332 2334443433 445667777777666666


Q ss_pred             HHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHh
Q 021040          186 VFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLS  222 (318)
Q Consensus       186 l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~  222 (318)
                      +.+.          .+|+..+.+.+++..+..++..+
T Consensus       367 l~~~----------~G~~~~f~~~~~~~~i~~~~~~~  393 (396)
T TIGR00882       367 MYDS----------IGFQGAYLVLGCIVLLFTLISVF  393 (396)
T ss_pred             HHHh----------cccHHHHHHHHHHHHHHHHHHHH
Confidence            6542          35777777777766666655543

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=98.65  E-value=2.2e-06  Score=78.95  Aligned_cols=122  Identities=18%  Similarity=0.130  Sum_probs=75.5

Q ss_pred             HHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCcc
Q 021040           42 CWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTS  120 (318)
Q Consensus        42 ~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~  120 (318)
                      ....+.|.++++. |.++.+.|.+.....+...++.++.|+++||+|||+. +..+.....++...+..  ..  ... .
T Consensus       224 ~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~--~~~-~  297 (385)
T TIGR00710       224 AFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSL-LRMGLILFAVSAVLLEI--TA--ILG-L  297 (385)
T ss_pred             HHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH-HHHHHHHHHHHHHHHHH--HH--Hhc-c
Confidence            3445667777765 9999999999999999999999999999999999887 45565555555433321  00  000 0


Q ss_pred             chhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHH
Q 021040          121 TLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMV  174 (318)
Q Consensus       121 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~  174 (318)
                      ......   .....+.+++.+...........|..  +++|+++.+..+.....
T Consensus       298 ~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~g~~~~~~~~~~~~  346 (385)
T TIGR00710       298 GSWAMI---IGPMMFVGIGNSMISSIAMAYALEDF--PHVAGTASALFGTLRLV  346 (385)
T ss_pred             chHHHH---HHHHHHHHHHHHHHHHHHHHHHhccC--cccchHHHHHHHHHHHH
Confidence            111111   11113355555555444445555543  35788888876655443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK09669 putative symporter YagG; Provisional

Probab=98.65  E-value=2e-06  Score=81.45  Aligned_cols=123  Identities=15%  Similarity=0.114  Sum_probs=79.0

Q ss_pred             hhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccchhHHHHHHHHHHHHHH
Q 021040           58 PRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFN  137 (318)
Q Consensus        58 ~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  137 (318)
                      +...+.+.....+...+..+++++++||+|||+.+ ..+.+..++....++.  .+     .++.+..    .+..++.+
T Consensus       263 ~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~-~~~~~~~~~~~~~~~~--~~-----~~~~~~~----~~~~~i~g  330 (444)
T PRK09669        263 PDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAF-KWTIVAFVILSALIFF--IP-----PSNVWLI----FALNILFN  330 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHH-HHHHHHHHHHHHHHHH--hC-----cchHHHH----HHHHHHHH
Confidence            34445566667778888899999999999999985 4555544443332221  11     1122211    12223567


Q ss_pred             HHHhhhHHhHhhhccccccCcc------chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 021040          138 VGWAATQVAHMSMVNCITLNST------SRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTA  192 (318)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~------~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~  192 (318)
                      ++.+...+...++++|..+..|      +.+...+..+....+|..+++.+++.+++..+.
T Consensus       331 ~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy  391 (444)
T PRK09669        331 FIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDY  391 (444)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            7777777777888888764211      124566778888889999988888888776554

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=98.65  E-value=6.2e-06  Score=76.96  Aligned_cols=154  Identities=16%  Similarity=0.067  Sum_probs=80.8

Q ss_pred             HHHHHHHHHh-CCChhHHHHHHHHH-HHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccch
Q 021040           45 TYLLLFLTDI-GLSPRGAAAVMLSG-QIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTL  122 (318)
Q Consensus        45 ~~l~~~l~~~-gls~~~~g~i~~~~-~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~  122 (318)
                      .+.++++.+. |+++.++|++.... .+...++.++.|+++||+||||. +..+.+..++.....+.  ..  ..++ +.
T Consensus       230 ~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~-l~~~~~~~~l~~l~~~~--~~--~~~~-~~  303 (402)
T PRK11902        230 SLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRS-LMLFGVLQAVSNLGYWV--LA--VTPK-HL  303 (402)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHHHH--HH--hcCC-cH
Confidence            3445666664 99999999998654 45678899999999999999887 44444444443222210  00  1111 12


Q ss_pred             hHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchhHHH
Q 021040          123 KVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQY  202 (318)
Q Consensus       123 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~  202 (318)
                      +.......+..+..+++.+........++.+..+ .+++    +..+....++...++.+++.+.+.          .+|
T Consensus       304 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~l~~~~~~~~~G~l~~~----------~G~  368 (402)
T PRK11902        304 WTMALAIGIENLCGGMGTAAFVALLMALCNRSFS-ATQY----ALLSALASVGRVYVGPTSGYLVEA----------YGW  368 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc-HHHH----HHHHHHHHHHHHHHHHHHHHHHHH----------hCh
Confidence            2112111111122334444444444445544432 2233    333334445555444444455432          467


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 021040          203 RWIAYSSIFIGCCFVGI  219 (318)
Q Consensus       203 ~~~~~i~~~~~~l~~~~  219 (318)
                      ++.+.+.++++++..++
T Consensus       369 ~~~f~~~~~~~~~~~~~  385 (402)
T PRK11902        369 PGFYLMTVVIALPGLAL  385 (402)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            77776666666554443

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=98.64  E-value=4.6e-07  Score=87.21  Aligned_cols=175  Identities=12%  Similarity=-0.046  Sum_probs=88.5

Q ss_pred             HHHHHHHHHHHhCCChhHHHH------------HHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCC
Q 021040           43 WFTYLLLFLTDIGLSPRGAAA------------VMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGG  110 (318)
Q Consensus        43 ~~~~l~~~l~~~gls~~~~g~------------i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~  110 (318)
                      ...+.|.++++.|.+....+.            ...+..+...++.++.++++||+|||+.. ..+.++.+++...+.. 
T Consensus       307 ~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l-~~~~~~~~~~~~~l~~-  384 (502)
T TIGR00887       307 VNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQ-LMGFFILTVLFFVLGF-  384 (502)
T ss_pred             cccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHH-HHHHHHHHHHHHHHHH-
Confidence            334566777777776432211            12233445556778899999999999874 4565555554432210 


Q ss_pred             CCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021040          111 CMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVS  190 (318)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~  190 (318)
                        .  ......... ...+.+  .....+.+. ......+.+|+.| .+.|++..++.+....+|+++++.+.+.+.+.-
T Consensus       385 --~--~~~~~~~~~-~~~~~~--~~~~~~~~~-~~~~~~~~~E~~p-~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~  455 (502)
T TIGR00887       385 --A--YNHLSTHGF-LAIYVL--AQFFANFGP-NATTFIVPGEVFP-TRYRSTAHGISAASGKAGAIIGQFGFLYLAQHG  455 (502)
T ss_pred             --H--HHhcchhHH-HHHHHH--HHHHHhcCC-CchhhhhhhccCc-hhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccc
Confidence              0  000000111 111111  111111111 1122345578876 578999999999888888887766654444311


Q ss_pred             ccCcccchhHHHHHHHHHHHHHHHHHHHHHHhccccccc
Q 021040          191 TAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRL  229 (318)
Q Consensus       191 ~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~  229 (318)
                      +.....+...++...+++.+++.++..+. .+++||++.
T Consensus       456 ~~~~~~~~~~~~~~~~~i~~~~~~~~~i~-~~~lpEt~~  493 (502)
T TIGR00887       456 DPTKGYPTGIWMGHVLEIFALFMFLGILF-TLLIPETKG  493 (502)
T ss_pred             cccccccccccchHHHHHHHHHHHHHHHH-heEeccCCC
Confidence            00000000012333456666665555443 467788754

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.63  E-value=3e-06  Score=76.13  Aligned_cols=167  Identities=13%  Similarity=0.083  Sum_probs=109.3

Q ss_pred             HHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcc
Q 021040           37 DITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRI  116 (318)
Q Consensus        37 ~~~~~~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~  116 (318)
                      +..++....++|.++.|.|+|+.+.|..++...+.........-.+++|...+|++.......+.++.+.+.+  .|   
T Consensus       221 S~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~--~P---  295 (395)
T COG2807         221 SLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLL--AP---  295 (395)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHH--hh---
Confidence            3456677789999999999999999999999999999999999999998877777666666666666554421  22   


Q ss_pred             cCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccc
Q 021040          117 LSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHA  196 (318)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~  196 (318)
                        .+..    +.+   .++.|+|.+...+-...++.+-++++++-++..++.+...++=...    ++.+++.+.     
T Consensus       296 --~~~~----~lw---~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~----GP~l~G~lh-----  357 (395)
T COG2807         296 --GQLP----ILW---ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAF----GPWLFGFLH-----  357 (395)
T ss_pred             --hhHH----HHH---HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhh----hhhhHhHHH-----
Confidence              2111    112   1346666666555556677777777777777777766544433333    334444433     


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 021040          197 DLENQYRWIAYSSIFIGCCFVGIFLSRTEE  226 (318)
Q Consensus       197 ~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e  226 (318)
                      |...+|+......+...++..+..+..-|+
T Consensus       358 Da~gsw~~~~~~l~~~~i~m~i~Gl~a~r~  387 (395)
T COG2807         358 DATGSWSAPLVLLALATLLMLIFGLRAGRN  387 (395)
T ss_pred             HhcCChHHHHHHHHHHHHHHHHHHhhcchh
Confidence            223467766655555555555555554443

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=98.63  E-value=6.6e-06  Score=76.69  Aligned_cols=152  Identities=19%  Similarity=0.053  Sum_probs=90.2

Q ss_pred             HHHHHHHHH-HHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccc
Q 021040           43 WFTYLLLFL-TDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTST  121 (318)
Q Consensus        43 ~~~~l~~~l-~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~  121 (318)
                      ...++++++ ++.|++..+.|.+.....+...++.++.|++.||.+| +..+. +..+..+....+..  .    . + +
T Consensus       235 ~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~-~~l~~-~~~~~~~~~~~l~~--~----~-~-~  304 (394)
T PRK10213        235 FFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVK-LALAG-APLVLAVSALVLTL--W----G-S-D  304 (394)
T ss_pred             HHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccch-hHHHH-HHHHHHHHHHHHHH--H----h-h-h
Confidence            445664444 4459999999999999999999999999999999644 44233 33332222222210  0    1 1 1


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchhHH
Q 021040          122 LKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQ  201 (318)
Q Consensus       122 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~  201 (318)
                      .+....    ..++.+++.+...+...+++.+..+  +++++..+.......+|..+|+.+++.+.+.          .+
T Consensus       305 ~~~~~~----~~~l~G~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~----------~g  368 (394)
T PRK10213        305 KIVATG----VAIIWGLTFALVPVGWSTWITRSLA--DQAEKAGSIQVAVIQLANTCGAAIGGYALDN----------IG  368 (394)
T ss_pred             HHHHHH----HHHHHHHHHHhhhHHHHHHHHHHCc--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------cC
Confidence            221111    1235667777777666666666554  3455666666667777888877777776643          23


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 021040          202 YRWIAYSSIFIGCCFVGIF  220 (318)
Q Consensus       202 ~~~~~~i~~~~~~l~~~~~  220 (318)
                      ++..+...+++..+..+.+
T Consensus       369 ~~~~~~~~~~~~~~~~~~~  387 (394)
T PRK10213        369 LTSPLMLSGTLMLLTALLV  387 (394)
T ss_pred             hhhHHHHHHHHHHHHHHHH
Confidence            4445445444444444444

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=98.61  E-value=3.2e-06  Score=78.77  Aligned_cols=126  Identities=10%  Similarity=-0.004  Sum_probs=84.7

Q ss_pred             HHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccchh
Q 021040           45 TYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLK  123 (318)
Q Consensus        45 ~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~  123 (318)
                      ..++.|+++. |.++.+.|.+.....+...+++++.+++.||+++|+. +..+. ..++....+.       +.  .+.+
T Consensus       226 ~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~-~~~g~-~~~~~~~~~~-------~~--~~~~  294 (393)
T PRK11195        226 FLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRV-LPAGI-LMGLVVLLMA-------LQ--HSLL  294 (393)
T ss_pred             HHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccch-HHHHH-HHHHHHHHHH-------HH--hHHH
Confidence            4456677775 9999999999999999999999999999999998876 44554 3333222111       01  1122


Q ss_pred             HHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccc-hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 021040          124 VETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTS-RVVLTSCRNAFTMVANLSLYAIAFIV  186 (318)
Q Consensus       124 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-R~~~~~~~~~~~~~g~~~~~~~~~~l  186 (318)
                      ...    +...+.+++.+...++..+...+..+ ++. ++++.+..+...+++..++..+.+.+
T Consensus       295 ~~~----~~~~~~G~~~g~~~~~~~~~~q~~~~-~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~  353 (393)
T PRK11195        295 PAY----PLLILIGALGGFFVVPMNALLQHRGH-VLVGAGHSIAVQNFNENLAMLLMLGLYSLL  353 (393)
T ss_pred             HHH----HHHHHHHHhhhhhhhhHHHHHHhhCc-ccccchhHHHHHhHHHHHHHHHHHHHHHHH
Confidence            111    11234566667667777777776543 333 68898898888888888877665533

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=98.61  E-value=3.7e-06  Score=77.72  Aligned_cols=164  Identities=12%  Similarity=-0.026  Sum_probs=90.4

Q ss_pred             hhhcccchHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhcc---CchHHHHHHHHHHHHH
Q 021040           27 LYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFG---HFKIWHGAGSVLVAVS  103 (318)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~G---rr~~~l~~g~~~~~i~  103 (318)
                      +...+..+...........++|.|+++.|.+.. .+....+..+...++.   ++++||..   ||+..+....+..++.
T Consensus       195 ~~~~~~~~~~~~~~~~~~~wlp~~L~~~g~s~~-~~~~~~l~~~~g~~g~---~~~~d~~~r~~~r~~~~~~~~~~~a~~  270 (368)
T TIGR00903       195 WIIGAILGFGVALFDNLAIWLEAALRPAGLEDI-AGDAVALAILAGLIGV---AVIPDRVARAGLRSIYIRAAALLIAAF  270 (368)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCChH-HHHHHHHHHHHHHHHH---HHhhHHhhhhhhHHHHHHHHHHHHHHH
Confidence            334444445555556667899999988788765 5666666666555554   66777654   4444333233333333


Q ss_pred             HHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHH
Q 021040          104 FSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIA  183 (318)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~  183 (318)
                      ...+.       ...  +........    .+.+++.........++.+|..| ++.|+++.++.+..+.+|+..++.+.
T Consensus       271 ~~~~~-------~~~--~~~~~~~~~----~l~~~~~~~~~~~~~~~~~~~~p-~~~rgt~~G~~~~~g~~~~~~~~~~~  336 (368)
T TIGR00903       271 FLALA-------FEL--NRLALFAFI----GIAGLLMLPAYAIIMDWIGKFCD-KELHGKAAGAIGFTSRAISVALALAA  336 (368)
T ss_pred             HHHHH-------Hcc--ccHHHHHHH----HHHHHhhhhhHHHHHHHHHHhcc-hhhcCcccchhhHHHHHHHHHHHHHH
Confidence            22111       111  111111111    22333333333345677888886 57899999999998888887766554


Q ss_pred             HHHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHH
Q 021040          184 FIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIF  220 (318)
Q Consensus       184 ~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~  220 (318)
                      +.++.            +.+..+.+.++..++.++..
T Consensus       337 ~~~~~------------~~~~~f~~~~~~~~i~~~~~  361 (368)
T TIGR00903       337 MLFIS------------SAEAYFTFLAILITIAFAIA  361 (368)
T ss_pred             HHHhc------------CHHHHHHHHHHHHHHHHHHH
Confidence            44331            23444555555555555444

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=98.59  E-value=4.3e-05  Score=75.52  Aligned_cols=170  Identities=14%  Similarity=0.061  Sum_probs=105.7

Q ss_pred             HHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhh-hccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCcc
Q 021040           43 WFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELID-RFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTS  120 (318)
Q Consensus        43 ~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsD-r~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~  120 (318)
                      +...+..|+++. |.+.+.+..+...+....-+...++|.++| ++||+|. +.++.++..++..++..+..|    +..
T Consensus         6 m~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~t-Il~~~ii~~lG~~llai~a~~----~~~   80 (654)
T TIGR00926         6 MRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKT-ILYLSIVYVVGHALLSFGAIP----SSG   80 (654)
T ss_pred             cHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-HHHHHHHHHHHHHHHHhccCc----ccc
Confidence            345567777764 999999999999998888999999999999 5899998 567777777776655321111    000


Q ss_pred             chhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccch
Q 021040          121 TLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNS--TSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADL  198 (318)
Q Consensus       121 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~  198 (318)
                      ........+.. ..+..+|.+..-+...+...|..++.  ++|.+...+.+.+.++|++++..+...+-...+..  + .
T Consensus        81 ~~~~~~~~l~g-LaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~f--g-~  156 (654)
T TIGR00926        81 HPLHDLLDLLG-LALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCF--G-C  156 (654)
T ss_pred             cchHHHHHHHH-HHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc--c-c
Confidence            01111111111 13455677777777788888876532  23567777888888888777655543332221100  0 0


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHH
Q 021040          199 ENQYRWIAYSSIFIGCCFVGIFL  221 (318)
Q Consensus       199 ~~~~~~~~~i~~~~~~l~~~~~~  221 (318)
                      ..+|.+.+.+.+++.++..++..
T Consensus       157 ~~~~~~aF~i~~i~m~ia~lvf~  179 (654)
T TIGR00926       157 QDCYPLAFGVPAILMILALIVFM  179 (654)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHH
Confidence            13577777777666665554443

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=98.59  E-value=2.1e-06  Score=90.63  Aligned_cols=150  Identities=10%  Similarity=-0.029  Sum_probs=98.2

Q ss_pred             ccchHHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhC
Q 021040           31 SGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFG  109 (318)
Q Consensus        31 ~~~~~~~~~~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~  109 (318)
                      ++.+..........+++|.|+++. |.+..+.|++++...++..+++++.|+++||.++++. +..+.++.+++...+..
T Consensus       232 ~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~-~~~~~~~~~~~~~~l~~  310 (1140)
T PRK06814        232 LGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLY-VPIGALLMGLFGLDLAF  310 (1140)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeee-ehHHHHHHHHHHHHHHh
Confidence            333333344455667889999886 9999999999999999999999999999998877665 33444444433322211


Q ss_pred             CCCCCc------------ccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHH
Q 021040          110 GCMPCR------------ILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANL  177 (318)
Q Consensus       110 ~~~~~~------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~  177 (318)
                       .....            +....+.+..    .+..++.+++.+...++..+++.+.++ +++|+++.+..+....+|..
T Consensus       311 -~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~g~~~~~~~~~~~~~~~~~~p-~~~~G~v~g~~~~~~~~~~~  384 (1140)
T PRK06814        311 -ASSSVPAEPAQLKSILVFLSKRHGWRI----LIDLFGLAAAGGLYIVPLFAALQAWAN-PAHRARVIAANNVLNAAFMV  384 (1140)
T ss_pred             -cccccccccccccchhhhhcccccHHH----HHHHHHHHHHHHHhHHHHHHHHHhhCC-cccceeeeHHHHHHHHHHHH
Confidence             00000            0000111211    122234667777777788888888876 57899999999988888888


Q ss_pred             HHHHHHHHHH
Q 021040          178 SLYAIAFIVF  187 (318)
Q Consensus       178 ~~~~~~~~l~  187 (318)
                      +++.+.+.+.
T Consensus       385 ig~~~~g~l~  394 (1140)
T PRK06814        385 AGTIILALLQ  394 (1140)
T ss_pred             HHHHHHHHHH
Confidence            7776655544

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=98.58  E-value=9.1e-06  Score=78.35  Aligned_cols=132  Identities=12%  Similarity=0.082  Sum_probs=96.5

Q ss_pred             HHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccc
Q 021040           43 WFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTST  121 (318)
Q Consensus        43 ~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~  121 (318)
                      ....+|.+.++. |.++...|++++...++..++..+.+.+.+|+++++. +..+.+..+++...+.       +.+  +
T Consensus       237 ~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~l-v~~~~~~~a~~~~~la-------l~~--~  306 (524)
T PF05977_consen  237 VWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRL-VLLASLLFALALLLLA-------LSP--S  306 (524)
T ss_pred             HHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchh-hHHHHHHHHHHHHHHh-------cch--H
Confidence            345567777775 9999999999999999999999999999999998887 5567777666654332       111  1


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021040          122 LKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSV  189 (318)
Q Consensus       122 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~  189 (318)
                      .+...+    ..++.|+++.......++.+...+| ++.|+++.+..+.....+..+|..+.+.+.+.
T Consensus       307 ~~~~~~----~l~l~G~~~~~~~~~~~t~~Q~~~P-~~~~GRv~si~~~~~~g~~~lGsll~G~la~~  369 (524)
T PF05977_consen  307 FWLALI----ALFLAGAAWIIANSSLNTLVQLSVP-DWVRGRVFSIYQMVFFGGMPLGSLLWGFLADH  369 (524)
T ss_pred             HHHHHH----HHHHHHHHHHHHHHHHHHHHHHhCC-HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            222111    1235677777777777777777665 57899999998888888888887777766654

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00901 2A0125 AmpG-related permease

Probab=98.58  E-value=1.5e-06  Score=79.47  Aligned_cols=130  Identities=12%  Similarity=0.084  Sum_probs=86.6

Q ss_pred             chHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHH-HHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCC
Q 021040           33 HMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQ-IADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGC  111 (318)
Q Consensus        33 ~~~~~~~~~~~~~~l~~~l~~~gls~~~~g~i~~~~~-i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~  111 (318)
                      .+..........+++++|+++.|.++.++|.+..+.. +...++.++.|+++||+||||. +..+.++.+++......  
T Consensus       218 ~~~~~~~~~~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~-l~~~~~~~~~~~~~~~~--  294 (356)
T TIGR00901       218 IVLYKLGDSAATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYA-LLLFGIVQALTNAGFVW--  294 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHHHHHHH--
Confidence            3334455556667889999888999999998887655 5677999999999999999888 45566665555442211  


Q ss_pred             CCCcccCc------cchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHH
Q 021040          112 MPCRILST------STLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFT  172 (318)
Q Consensus       112 ~~~~~~~~------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~  172 (318)
                      .+.  ...      .+.+.    .....++.+++.+...+...++..+.+| +++|++..+..+...
T Consensus       295 ~~~--~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~~~~~~~~~p-~~~~g~~~g~~~~~~  354 (356)
T TIGR00901       295 LAS--NGHHDGITFPHLLM----LFLTITLEAVTGGLGTVAFVAFLSKLSN-PKFGATQMALLSSLS  354 (356)
T ss_pred             HHh--cCcccccccchHHH----HHHHHHHHHHHhHHHHHHHHHHHHHhcC-CCccHHHHHHHHHHH
Confidence            100  000      11111    1111234567777778888889999886 589999888776543

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=98.57  E-value=9.5e-07  Score=80.07  Aligned_cols=134  Identities=17%  Similarity=0.193  Sum_probs=91.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHh-CCC-hhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCC
Q 021040           34 MLNDITAACWFTYLLLFLTDI-GLS-PRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGC  111 (318)
Q Consensus        34 ~~~~~~~~~~~~~l~~~l~~~-gls-~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~  111 (318)
                      +...........+++.|+.+. |.+ ..+.+.+..+..+...+..++.|+++||+|+|+.. ........+....+..  
T Consensus       216 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~--  292 (352)
T PF07690_consen  216 FLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRL-LIAILLLILGALGLLL--  292 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH-HHHHHHHHHHHHHHCC--
T ss_pred             hHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHH-HHHHHHHHHHHHHHHH--
Confidence            333345555667888886664 999 89999999999999999999999999999987774 4444444444433321  


Q ss_pred             CCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHH
Q 021040          112 MPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSL  179 (318)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~  179 (318)
                      .+    ...+..+...    ...+.+++.+...+...++..+..+ +++|+++.+..+...++|..++
T Consensus       293 ~~----~~~~~~~~~~----~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~~~~~ig  351 (352)
T PF07690_consen  293 LP----FSSSPVWLII----ALFLIGFGFGIVFPILFSLIQELVP-PEYRGTAFGLFNSIGSLGGIIG  351 (352)
T ss_dssp             SH----HHCHHHHHHH----HHHHHHHHHHHHCHHHHHHHHCCCH-TCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HH----HhhhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHC
Confidence            11    1111121111    1234667777777777888888875 5789999999988888887654

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=98.55  E-value=7.6e-06  Score=75.31  Aligned_cols=55  Identities=16%  Similarity=0.198  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHH
Q 021040           44 FTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVL   99 (318)
Q Consensus        44 ~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~   99 (318)
                      .++.+.++.+. |.++.+.|.+..+..+...++.++.|++.||+||||.. ..+...
T Consensus       214 ~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~-~~~~~~  269 (377)
T PRK11102        214 LTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNML-RFGLWI  269 (377)
T ss_pred             HHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHH-HHHHHH
Confidence            34456677775 99999999999999999999999999999999999884 455544

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=98.54  E-value=1.9e-05  Score=71.19  Aligned_cols=163  Identities=18%  Similarity=0.147  Sum_probs=99.3

Q ss_pred             HHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcc
Q 021040           38 ITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRI  116 (318)
Q Consensus        38 ~~~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~  116 (318)
                      ..+.+....+.+-+.+. |.+..|.+++.........+.+-.+|..+||+||||-+..........+...        +.
T Consensus        91 ~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is--------~~  162 (528)
T KOG0253|consen   91 AMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVIS--------GA  162 (528)
T ss_pred             HHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhh--------cC
Confidence            33444555666666777 9999999999988888999999999999999999998643222222222111        12


Q ss_pred             cCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccc
Q 021040          117 LSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHA  196 (318)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~  196 (318)
                      +++  ..+    .+++..+.++|.+. .+...++..|..|. .+|...+-+. ....+|.+....+....+..       
T Consensus       163 spn--f~~----L~~f~~l~~~g~gg-~pv~~~~yle~lp~-~~r~~~~V~~-~~waig~v~ea~law~vm~~-------  226 (528)
T KOG0253|consen  163 SPN--FAS----LCVFRALWGFGVGG-LPVDSAIYLEFLPS-SHRWLLTVMS-FFWAIGQVFEALLAWGVMSN-------  226 (528)
T ss_pred             CCC--eeh----hhHHHHHHhccCCC-ccHhHHHHHHhccC-cCCCcchhHH-HHHHHHHHHHHHHHHHHHHh-------
Confidence            222  222    13334556666665 22234555666654 4555544333 56677877776666555543       


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 021040          197 DLENQYRWIAYSSIFIGCCFVGIFLSRTEEPR  228 (318)
Q Consensus       197 ~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~  228 (318)
                         .+|||..+....+..+. ...+++++|++
T Consensus       227 ---~gwr~~l~~~~~pl~~~-a~f~~w~~ESp  254 (528)
T KOG0253|consen  227 ---FGWRYLLFTSSTPLMFA-ARFLVWVYESP  254 (528)
T ss_pred             ---hhHHHHHHHHHhHHHHH-HHHHhhcccCc
Confidence               57888876655443333 34457788875

>TIGR01272 gluP glucose/galactose transporter

Probab=98.54  E-value=6.5e-06  Score=74.23  Aligned_cols=133  Identities=9%  Similarity=-0.074  Sum_probs=83.6

Q ss_pred             ccchHHHHHHHHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHH
Q 021040           31 SGHMLNDITAACWFTYLLLFLTDI---GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSV  107 (318)
Q Consensus        31 ~~~~~~~~~~~~~~~~l~~~l~~~---gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~  107 (318)
                      ++.|...........+++.|+++.   |+++.+.+...+.+.....++..+.++++||+|+||. +.++.++.+++....
T Consensus       147 ~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~-l~~~~~l~~~~~~l~  225 (310)
T TIGR01272       147 LGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRY-LAFNAFLAVLLSIGA  225 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHH-HHHHHHHHHHHHHHH
Confidence            344555556666778899999862   8999999999999999999999999999999999887 556666655554333


Q ss_pred             hCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHH
Q 021040          108 FGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYA  181 (318)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~  181 (318)
                      ..       .+.  .. .....    .+.+++.+...+...+...+..++  +.+.+.++. ..+.+|+.+.+.
T Consensus       226 ~~-------~~~--~~-~~~~~----~l~g~~~s~i~P~~~s~a~~~~~~--~~~~asai~-~~~~~Gg~i~P~  282 (310)
T TIGR01272       226 AL-------THG--YV-AMWFV----LALGLFNSIMFPTIFSLALNALGR--HTSQGSGIL-CLAIVGGAIVPL  282 (310)
T ss_pred             HH-------cCC--HH-HHHHH----HHHHHHHHHHHHHHHHHHHhhhhh--hhhhhHHHH-HHHHhcchHHHH
Confidence            21       111  11 11111    235566666665555555554432  233344443 344455554443

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=98.54  E-value=5e-06  Score=77.63  Aligned_cols=131  Identities=14%  Similarity=0.082  Sum_probs=85.1

Q ss_pred             HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhh-ccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccch
Q 021040           44 FTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDR-FGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTL  122 (318)
Q Consensus        44 ~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr-~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~  122 (318)
                      ..++|.|+++.+.++.+.|++.++..+.........+.+.|| ++.|+. +..+.++.+++...+..       .++  .
T Consensus       228 ~~~~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~~~~~~~~l~~-------~~~--~  297 (400)
T PRK11646        228 MLMLPIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHR-LMAGLLIMSLSMFPIGM-------VSN--L  297 (400)
T ss_pred             HHhhhhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHH-HHHHHHHHHHHHHHHHH-------hhh--H
Confidence            456788888875577889998888777766666666777764 565554 45566666655443321       111  1


Q ss_pred             hHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021040          123 KVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSV  189 (318)
Q Consensus       123 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~  189 (318)
                      ....+    ...+.+.+.+...++..++..+..| +++|++..+..+....+|..+++.+++.+.+.
T Consensus       298 ~~~~~----~~~l~~~g~~~~~p~~~~~~~~~~p-~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~  359 (400)
T PRK11646        298 QQLFT----LICLFYIGSIIAEPARETLSASLAD-ARARGSYMGFSRLGLALGGAIGYIGGGWLFDL  359 (400)
T ss_pred             HHHHH----HHHHHHHHHHHHHccHHHHHHhcCC-cccchhhhhHHHHHHHHHHHhcccchHHHHHH
Confidence            21111    1123455555556666777778775 57899999999998889988888887777654

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=98.53  E-value=9.8e-06  Score=75.21  Aligned_cols=62  Identities=13%  Similarity=0.001  Sum_probs=49.2

Q ss_pred             HHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHH
Q 021040           45 TYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSV  107 (318)
Q Consensus        45 ~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~  107 (318)
                      .+.+.++.+. |.+..+.+.+.....+...++.++.|+++||+|||+. +..+.++..++...+
T Consensus       224 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~-~~~~~~~~~~~~~~~  286 (392)
T PRK10473        224 NTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTL-MLTSQVLFLAAGITL  286 (392)
T ss_pred             HhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH-HHHHHHHHHHHHHHH
Confidence            3445566655 9999999999999999999999999999999999987 456666666655443

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.53  E-value=8.5e-06  Score=77.85  Aligned_cols=150  Identities=11%  Similarity=0.093  Sum_probs=91.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCC
Q 021040           34 MLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMP  113 (318)
Q Consensus        34 ~~~~~~~~~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~  113 (318)
                      +.......+...+.+.|.+...-+....+++..+..+...++.|++++++||+|||+.+ .++.++.+++....+.  ..
T Consensus       241 ~~~~~~~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~-~~~~~~~~~~~~~~~~--~~  317 (473)
T PRK10429        241 LAYNIASNIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILW-AGASIFPVLSCGVLLL--MG  317 (473)
T ss_pred             HHHHHHHHHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHH-HHHHHHHHHHHHHHHH--Hh
Confidence            33444444555555544444433567778888877888899999999999999999985 4555554444333221  00


Q ss_pred             CcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCc------cchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021040          114 CRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNS------TSRVVLTSCRNAFTMVANLSLYAIAFIVF  187 (318)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~------~~R~~~~~~~~~~~~~g~~~~~~~~~~l~  187 (318)
                        +....+.+. +   .+...+.+++.+.......++++|..+..      ++.+...+......-+|..+++.+.+.++
T Consensus       318 --~~~~~~~~~-~---~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l  391 (473)
T PRK10429        318 --LAAPHNALL-I---VIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVL  391 (473)
T ss_pred             --ccCchhHHH-H---HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              011111221 1   12223456666666666777888875421      11244678888888888888888877777


Q ss_pred             Hhhcc
Q 021040          188 SVSTA  192 (318)
Q Consensus       188 ~~~~~  192 (318)
                      +..+.
T Consensus       392 ~~~Gy  396 (473)
T PRK10429        392 GLIGY  396 (473)
T ss_pred             HHcCC
Confidence            65543

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=98.50  E-value=5.8e-06  Score=75.54  Aligned_cols=145  Identities=11%  Similarity=0.007  Sum_probs=86.0

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHH-HHH-HHHHHHHHHHh
Q 021040           32 GHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHG-AGS-VLVAVSFSSVF  108 (318)
Q Consensus        32 ~~~~~~~~~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~-~g~-~~~~i~~~~~~  108 (318)
                      ..+...........+++.|+++. |.++.+.+.......+...++.++.|+++||+++||.... ... ....++....+
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~  303 (379)
T TIGR00881       224 GYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYW  303 (379)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHh
Confidence            33333344445667888998886 9999999999999999999999999999998643332122 111 11112211111


Q ss_pred             CCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021040          109 GGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFS  188 (318)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~  188 (318)
                      .  .     +..+.....    +...+.+...............|..+ +++|+++.++.+....+|..+++.+.+.+.+
T Consensus       304 ~--~-----~~~~~~~~~----~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~  371 (379)
T TIGR00881       304 L--N-----PAANPLMDL----ICLFALGFLVYGPQMLIGVIASELAP-KKAAGTAAGFVGFFAYLGGILAGLPLGYLAD  371 (379)
T ss_pred             c--C-----cchhHHHHH----HHHHHHHHHHhhhhHHHHHHHHHhcC-cchhHHHHHHHHHhhhhhhhhhhhhHHHHHH
Confidence            1  1     111111111    11122332222222233455667765 5789999999998888888877776666554

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.49  E-value=4.6e-06  Score=79.12  Aligned_cols=187  Identities=14%  Similarity=0.062  Sum_probs=111.7

Q ss_pred             CCCCchhh------hhhcccchHHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhcc----
Q 021040           19 QPVGRWSV------LYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFG----   87 (318)
Q Consensus        19 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~G----   87 (318)
                      ++.|++++      ++..+..++..........|+|.|++|+ |.+-.+.|+..++..+...+...+.|.++||.-    
T Consensus       247 ~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~l  326 (466)
T KOG2532|consen  247 PPVPYKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRIL  326 (466)
T ss_pred             CCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence            46676664      4556677888888888889999999997 999999999999999999999999999999653    


Q ss_pred             ----CchHHHHHHHHHHHHHHHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhH
Q 021040           88 ----HFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVV  163 (318)
Q Consensus        88 ----rr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~  163 (318)
                          +||.+=.++....++++..+-       +.+........+.+.+.....++..+.....    ..|..  ++--+.
T Consensus       327 s~t~~rkifn~i~~~~~ai~l~~l~-------~~~~~~~~~a~~~l~~~~~~~g~~~~Gf~~~----~~~~a--pq~a~~  393 (466)
T KOG2532|consen  327 SETTVRKIFNTIAFGGPAVFLLVLA-------FTSDEHRLLAVILLTIAIGLSGFNISGFYKN----HQDIA--PQHAGF  393 (466)
T ss_pred             chHhHHHHHHhHHHHHHHHHHHeee-------ecCCCcchHHHHHHHHHHHHcccchhhhHhh----hhhcc--chHHHH
Confidence                344443344444444433221       1222122222222211101111111111111    11111  233456


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhccc
Q 021040          164 LTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTE  225 (318)
Q Consensus       164 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~  225 (318)
                      +.++.+....++.++++.+.    +.+-..   +....|++.|++.+++.++..++..++.+
T Consensus       394 l~g~~~~~~~~~~~~~P~~v----g~~~~~---~t~~eW~~VF~i~a~i~~~~~i~f~~f~s  448 (466)
T KOG2532|consen  394 VMGIINFVGALAGFIAPLLV----GIIVTD---NTREEWRIVFLIAAGILIVGNIIFLFFGS  448 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHhe----eeEeCC---CCHHHHHHHHHHHHHHHHHhchheeEeec
Confidence            67777776666665544433    322211   13578999999998888887766665543

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.42  E-value=1.2e-06  Score=80.28  Aligned_cols=125  Identities=18%  Similarity=0.099  Sum_probs=77.3

Q ss_pred             HHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCccc
Q 021040           39 TAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRIL  117 (318)
Q Consensus        39 ~~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~  117 (318)
                      .......+++.|+++. |.++.+.+....+..+...++.++.|+++||+||||.+ ..+......+...+..  ..   .
T Consensus       240 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~-~~~~~~~~~~~~~~~~--~~---~  313 (366)
T TIGR00886       240 SFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKL-LMSFLGVAMGAFLVVL--GL---V  313 (366)
T ss_pred             HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhH-HHHHHHHHHHHHHHHh--cC---C
Confidence            3445567788899886 99999999999999999999999999999999998874 4444444444332221  00   1


Q ss_pred             CccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHH
Q 021040          118 STSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVA  175 (318)
Q Consensus       118 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g  175 (318)
                      .+.+........    .+..++.+.......+..++..+  ++|+.+.+..+...++|
T Consensus       314 ~~~~~~~~~~~~----~~~~~~~g~~~~~~~~~~~~~~~--~~~g~~~g~~~~~~~~g  365 (366)
T TIGR00886       314 SPLSLAVFIVLF----VALFFFSGAGNGSTFALVPHIFR--RATGAVSGLVGAIGNLG  365 (366)
T ss_pred             CcchHHHHHHHH----HHHHHHhccccchhhhcchhhch--hhcccHHHHHHHhccCC
Confidence            110122111111    12233344444445566677653  57888888766654443

>PRK10133 L-fucose transporter; Provisional

Probab=98.39  E-value=2.6e-05  Score=73.80  Aligned_cols=117  Identities=13%  Similarity=-0.009  Sum_probs=73.9

Q ss_pred             HHHHHHHHHHHHHHHHH-HHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCC
Q 021040           35 LNDITAACWFTYLLLFL-TDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCM  112 (318)
Q Consensus        35 ~~~~~~~~~~~~l~~~l-~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~  112 (318)
                      ...........+++.|+ ++. |.++.+.|+.+....+...++.++.|++.||+||||. +..+.++.++.......   
T Consensus       269 ~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~-l~~~~~~~~~~~~~~~~---  344 (438)
T PRK10133        269 CYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKV-LAAYALIAMALCLISAF---  344 (438)
T ss_pred             HHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHH-HHHHHHHHHHHHHHHHH---
Confidence            33333444456778785 455 9999999999999999999999999999999999988 45555554444332211   


Q ss_pred             CCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHH
Q 021040          113 PCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCR  168 (318)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~  168 (318)
                          .++  .. ....+    .+.+++.+...+...+...+..+  ++.+.+.++.
T Consensus       345 ----~~~--~~-~~~~~----~l~glg~~~i~P~~~s~a~~~~~--~~~~~as~l~  387 (438)
T PRK10133        345 ----AGG--HV-GLIAL----TLCSAFMSIQYPTIFSLGIKNLG--QDTKYGSSFI  387 (438)
T ss_pred             ----cCC--hH-HHHHH----HHHHHHHHHHHHHHHHHHHcccc--hhhccchhHH
Confidence                111  11 11111    34667777777666666655443  2333444444

>PRK11043 putative transporter; Provisional

Probab=98.39  E-value=2.7e-05  Score=72.43  Aligned_cols=130  Identities=15%  Similarity=0.102  Sum_probs=75.5

Q ss_pred             HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccc
Q 021040           42 CWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTST  121 (318)
Q Consensus        42 ~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~  121 (318)
                      ....+.|.++++.|.+..+.|+......+...++..+.+++.||+|+||. +..+.+..+++...++.  ..  .....+
T Consensus       221 ~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~-~~~~~~~~~~~~~~~~~--~~--~~~~~~  295 (401)
T PRK11043        221 AWLTGSPFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQL-LPWLLVLFAVSVIAIWL--AS--LLSHPS  295 (401)
T ss_pred             HHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHH-HHHHHHHHHHHHHHHHH--HH--HhccCc
Confidence            34456777777779999999998888888888899999999999998886 33444433333222210  00  000111


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHH
Q 021040          122 LKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAI  182 (318)
Q Consensus       122 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~  182 (318)
                      .....+.    ..+.+++.+...+...+...+..  +++|+++.++.+.....+...++.+
T Consensus       296 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~~g~~~~~~~~~~~~~~~~  350 (401)
T PRK11043        296 LVPLLIP----FCVMAAANGAIYPIVVAQALRPF--PQATGKAAALQNTLQLGLCFLASLL  350 (401)
T ss_pred             HHHHHHH----HHHHHHHHHHHHHHHHHHHhhhC--cccChHHHHHHHHHHHHHHHHHHHH
Confidence            1111111    12344455544444444443433  3578999888887665555544433

>PRK11462 putative transporter; Provisional

Probab=98.35  E-value=0.00015  Score=69.18  Aligned_cols=141  Identities=12%  Similarity=0.020  Sum_probs=79.5

Q ss_pred             HHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcc
Q 021040           38 ITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRI  116 (318)
Q Consensus        38 ~~~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~  116 (318)
                      +...+.......|.+.. |. +...+.++....+...++.+++++++||+|||+.+. .+....++.....+.  .+   
T Consensus       242 ~~~~~~~~~~~y~~~y~~g~-~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~-~~~~~~~~~~~~~~~--~~---  314 (460)
T PRK11462        242 LAVCVRGGAMMYYVTWILGT-PEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFW-WTNALLAVISLAMFF--VP---  314 (460)
T ss_pred             HHHHHHHhHhhhhhhhhcCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHH-HHHHHHHHHHHHHHH--hc---
Confidence            33333444445555555 43 344566777888888999999999999999988753 333323232222221  11   


Q ss_pred             cCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCc-----cch-hHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021040          117 LSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNS-----TSR-VVLTSCRNAFTMVANLSLYAIAFIVFSVS  190 (318)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-----~~R-~~~~~~~~~~~~~g~~~~~~~~~~l~~~~  190 (318)
                        ..+.....+    ..++.+++.+.......++++|..+..     ++| +...+.......+|..+++.+++.+++..
T Consensus       315 --~~~~~~~~~----~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~  388 (460)
T PRK11462        315 --MQASITMFV----FIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYG  388 (460)
T ss_pred             --hhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence              111111111    112345555555555566777765311     222 33345566778888888888887777654


Q ss_pred             c
Q 021040          191 T  191 (318)
Q Consensus       191 ~  191 (318)
                      +
T Consensus       389 G  389 (460)
T PRK11462        389 G  389 (460)
T ss_pred             C
Confidence            3

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.35  E-value=4.1e-05  Score=71.92  Aligned_cols=148  Identities=18%  Similarity=0.134  Sum_probs=99.7

Q ss_pred             chHHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCC
Q 021040           33 HMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGC  111 (318)
Q Consensus        33 ~~~~~~~~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~  111 (318)
                      .+.......+..+....|.+.. |-+..+..+.+........++.++...+++|+||||.+ .++.++.+++...+|+  
T Consensus       245 ~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~-~~~~~~~~i~~~~~~f--  321 (467)
T COG2211         245 NLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLF-LIGLLLLAVGYLLLYF--  321 (467)
T ss_pred             HHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHH-HHHHHHHHHHHHHHHh--
Confidence            3444444555555555555555 88888888888888888888899999999999999996 5678888888777764  


Q ss_pred             CCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCcc-----ch-hHHHHHHHHHHHHHHHHHHHHHHH
Q 021040          112 MPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNST-----SR-VVLTSCRNAFTMVANLSLYAIAFI  185 (318)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~R-~~~~~~~~~~~~~g~~~~~~~~~~  185 (318)
                      .|     .++....    .+..++.+++.+....-..++++|..+..|     +| |...+......=+|..++..+.+.
T Consensus       322 ~~-----~~~~~l~----~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~  392 (467)
T COG2211         322 TP-----AGSVVLI----VVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGW  392 (467)
T ss_pred             hc-----CcchHHH----HHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            22     1222221    222245678888877777889998863211     12 344566666667777777777677


Q ss_pred             HHHhhcc
Q 021040          186 VFSVSTA  192 (318)
Q Consensus       186 l~~~~~~  192 (318)
                      .++..+.
T Consensus       393 ~L~~~Gy  399 (467)
T COG2211         393 ILGAIGY  399 (467)
T ss_pred             HHHHcCC
Confidence            7776654

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=98.32  E-value=0.0033  Score=59.79  Aligned_cols=265  Identities=8%  Similarity=-0.057  Sum_probs=126.0

Q ss_pred             HHHHHHHHh-CC-----ChhHHHHHHHHHHHHHHHH-hhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCc--c
Q 021040           46 YLLLFLTDI-GL-----SPRGAAAVMLSGQIADGFA-TIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCR--I  116 (318)
Q Consensus        46 ~l~~~l~~~-gl-----s~~~~g~i~~~~~i~~~i~-~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~--~  116 (318)
                      ++..-++|. ++     ....+.++-+...+..++. .|+.+.+++|++|+|.+ .+....+...+.....--.|..  +
T Consensus        24 ~iLR~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf-~~~~~~F~~~f~lF~~vl~p~~~~~  102 (472)
T TIGR00769        24 TILRDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALF-YTVISPFLGFFALFAFVIYPLSDLL  102 (472)
T ss_pred             HHHHhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhH-HHHHHHHHHHHHHHHHHHhcchhhc
Confidence            344445563 44     3356778877776666655 89999999999999885 3333333333221110001110  0


Q ss_pred             cCcc---------c--hhHH-----HHHHHHHHHHHHHHHhhhHH-hHhhhccccccCccchhHHHHHHHHHHHHHHHHH
Q 021040          117 LSTS---------T--LKVE-----TISYCVFAAIFNVGWAATQV-AHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSL  179 (318)
Q Consensus       117 ~~~~---------~--~~~~-----~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~  179 (318)
                      -++.         +  ..+.     -..+.++.+...+-...... ...+...|++. .+|-.+..+....++++|.+++
T Consensus       103 ~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t-~~qakRfy~l~~~ganlg~i~s  181 (472)
T TIGR00769       103 HPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITT-IDEAKRFYALFGLGANVALIFS  181 (472)
T ss_pred             CCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHH
Confidence            0000         0  0000     01112222222322222222 56778889875 4666788899999989888877


Q ss_pred             HHHHHHHHHhhccCcccchhH--HHHHHHHHHHHHHHHHHHHHHhccccc---cc-------ccccCCCCchHHHHHHHH
Q 021040          180 YAIAFIVFSVSTAKTHADLEN--QYRWIAYSSIFIGCCFVGIFLSRTEEP---RL-------KMGLRGNSHARISWAYWF  247 (318)
Q Consensus       180 ~~~~~~l~~~~~~~~~~~~~~--~~~~~~~i~~~~~~l~~~~~~~~~~e~---~~-------~~~~~~~~~~~~~~~~~~  247 (318)
                      +.+...+.......+.+....  ...+...+.++.+.+...+....-++.   +.       +++++++.+..++++.++
T Consensus       182 g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~k~k~~~~es~k~i~  261 (472)
T TIGR00769       182 GRTIKYFSKLRASLGPGVDGWHVSLKNLMVIVICSGLAIILLYWWVNRNVLTDPRSYNPALKEKKVKPKMSTMESLKFLV  261 (472)
T ss_pred             HHHHHHHHHhhhccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccccchhhccccCCCCCCHHHHHHHHH
Confidence            655433332100000000011  112233333333333332322221211   10       011123445789999999


Q ss_pred             hcHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhccccccc---hhhHHHHHHHHHHHHHHHHHHHHHHh
Q 021040          248 KKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQS---AKALVPAIIYICSFIVSILLQVISLK  312 (318)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~---~~~~~~~~~~v~~~i~~~~~~~i~~~  312 (318)
                      |+|.++.+++..++.....+....-.-..+.+...-+.+   ..+.+.....+.+++...+.+++-||
T Consensus       262 ~S~yL~~ia~~vi~y~~~~nlve~~~k~~v~~~~p~~~~~~~f~g~~~~~~gi~tl~~~l~~~~l~~~  329 (472)
T TIGR00769       262 SSPYILDLALLVIAYGISINLVEVTWKSKLKAQYPSPNEYSAFMGDFSTWTGVVSVTMMLLSGNVIRK  329 (472)
T ss_pred             hCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999887777666666555554443333333443321111   23333334444444444444554444

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=98.31  E-value=3.1e-05  Score=67.22  Aligned_cols=122  Identities=17%  Similarity=0.134  Sum_probs=76.1

Q ss_pred             HHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccchhHH
Q 021040           47 LLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVE  125 (318)
Q Consensus        47 l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  125 (318)
                      .++.+++. |+|.+|...+-....++..+ .++.|.+.||+|.+-+ +.+|.+...+++..+|. +.- .-.+..+.+ .
T Consensus        24 yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~-l~iG~~~~~~GY~~~~l-~~~-~~i~~~~~~-~   98 (250)
T PF06813_consen   24 YSPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVV-LLIGAVLGFVGYGLLWL-AVS-GRIPSLPVW-L   98 (250)
T ss_pred             hhHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHH-HHHHHHHHHHHHHHHHH-HHh-CccCccchH-H
Confidence            35556664 99999999999999999876 6899999999999877 67899999999887774 111 111111222 2


Q ss_pred             HHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHH
Q 021040          126 TISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLS  178 (318)
Q Consensus       126 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~  178 (318)
                      ...+   .++.+.+.+..+.+.-....+.+  +++||.+.++.-....+++.+
T Consensus        99 ~~~~---~~l~~~s~~~~~ta~lvt~~~NF--P~~RG~vvgilk~~~GLSaai  146 (250)
T PF06813_consen   99 MCLF---LFLGGNSSCWFNTASLVTCVRNF--PRSRGTVVGILKGFFGLSAAI  146 (250)
T ss_pred             HHHH---HHHHcccHHHhhhHHHHHHHHhC--ccccCceehhhhHHHHhHHHH
Confidence            2111   12222232222222111122334  368999999877776666554

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=98.22  E-value=6.9e-05  Score=68.82  Aligned_cols=129  Identities=12%  Similarity=0.118  Sum_probs=90.3

Q ss_pred             HHHHHHHHH-hCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccchh
Q 021040           45 TYLLLFLTD-IGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLK  123 (318)
Q Consensus        45 ~~l~~~l~~-~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~  123 (318)
                      +.-..|-.. +|++..++.++.....+..+++..+.|+|.||+|.|+. +..+.++..+..+...+       ...  ..
T Consensus       273 ~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~v-l~~~lvi~~~~~~~~~~-------~~~--~~  342 (438)
T COG2270         273 AMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPV-LMIGLVILSIAALYLIF-------LEG--EL  342 (438)
T ss_pred             HHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcee-ehHHHHHHHHHHHHHHH-------ccc--cH
Confidence            445677774 59999999999999999999999999999999999877 45666555554332221       111  11


Q ss_pred             HHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021040          124 VETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFS  188 (318)
Q Consensus       124 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~  188 (318)
                       .   +.+...+.+...+..+....++.+++.|+ ++-++..++.+...-.+..+++...+.+..
T Consensus       343 -~---f~i~gll~g~s~G~~qA~SRSy~~~lvp~-~k~~~fFglyaltgra~S~~gp~lv~v~t~  402 (438)
T COG2270         343 -D---FWILGLLVGTSLGGAQASSRSYLARLVPK-GKEGRFFGLYALTGRAASFLGPFLVAVITQ  402 (438)
T ss_pred             -H---HHHHHHHHHHhcchHHHHHHHHHHHhCCC-ccccceeehhhhhhhHHHHHHHHHHHHHHH
Confidence             1   12222356677777788888899999875 455677888888877777777666544443

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=98.20  E-value=0.0053  Score=57.69  Aligned_cols=265  Identities=13%  Similarity=0.111  Sum_probs=131.4

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHH-------HHHH
Q 021040           32 GHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVL-------VAVS  103 (318)
Q Consensus        32 ~~~~~~~~~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~-------~~i~  103 (318)
                      +++......-++..-.+.|+.++ .-+--..+..-..-.+..++..|..|.+.||..|.|. +....+.       .++.
T Consensus        10 sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~-~~~~l~~Qn~sv~~s~~~   88 (432)
T PF06963_consen   10 SHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKV-IRTSLVVQNLSVAASCAL   88 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhh-HHHHHHHHHHHHHHHHHH
Confidence            33433444445656678888887 3243334444444456677899999999999988876 3333221       1112


Q ss_pred             HHHHhCCCCCCcccCccchhHHHHHHH---HHHHHHHHHHhhhHHh-Hhhhcccccc-CccchhHHHHHHHHHHHHHHHH
Q 021040          104 FSSVFGGCMPCRILSTSTLKVETISYC---VFAAIFNVGWAATQVA-HMSMVNCITL-NSTSRVVLTSCRNAFTMVANLS  178 (318)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~-~~~~~~~~~~-~~~~R~~~~~~~~~~~~~g~~~  178 (318)
                      +..++.  .+..  ...+.......+.   +..++-..+..+..+. ..=++..+.. ++++.++.++...-.-.+..++
T Consensus        89 ~~~l~~--~~~~--~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckll  164 (432)
T PF06963_consen   89 FLLLLS--YPSS--SSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLL  164 (432)
T ss_pred             HHHHHh--CCcc--ccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHH
Confidence            222221  1100  0000111111111   1111122222222111 1112222331 3344566666655566667777


Q ss_pred             HHHHHHHHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHH-------hcccccccc-----cccC--CC--------
Q 021040          179 LYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFL-------SRTEEPRLK-----MGLR--GN--------  236 (318)
Q Consensus       179 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~-------~~~~e~~~~-----~~~~--~~--------  236 (318)
                      ++.+.+.+.+..          +......+.++..++..++=+       -.+|+-+.+     ++.+  ++        
T Consensus       165 aPl~vG~l~t~~----------s~~~~~~~i~~~N~~S~~vEy~~l~~VY~~~P~L~~~~~~~~~~~~~~~~~~~~~~~~  234 (432)
T PF06963_consen  165 APLFVGLLMTFA----------SPVIAAIFIAGWNLASVFVEYFLLARVYNSVPALAVKKRSSESESSSDEESSSESSSD  234 (432)
T ss_pred             HHHHHHHHhhcc----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHhcCCCCCccccccccccccccccch
Confidence            776666655432          333344444444433332221       122221111     0000  00        


Q ss_pred             C-----------chHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhccccccchhhHHHHHHHHHHHHHHHH
Q 021040          237 S-----------HARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSIL  305 (318)
Q Consensus       237 ~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~v~~~i~~~~  305 (318)
                      .           +..++|+.-+|+|-++......++... .-.+...+..|+..+ |+++..++..-.+..+.++.+.++
T Consensus       235 ~~~~~~~~~~~~~~~~~w~~Y~~q~vflas~alalLY~T-VLsf~~lmt~yl~~~-G~s~~~igi~R~~gav~Gl~gT~~  312 (432)
T PF06963_consen  235 PSILKRLWNPLRTIIRGWRTYFRQPVFLASFALALLYFT-VLSFGGLMTAYLKSQ-GYSPSVIGIFRGLGAVFGLLGTWV  312 (432)
T ss_pred             hhHHHHHHHHHHHHhccHHHHHhCHHHHHHHHHHHHHHH-HhcCcHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence            0           112335555666655544333333322 334566677888887 999999999999999999999999


Q ss_pred             HHHHHHhh
Q 021040          306 LQVISLKL  313 (318)
Q Consensus       306 ~~~i~~~~  313 (318)
                      .+++.+|+
T Consensus       313 ~p~l~~ri  320 (432)
T PF06963_consen  313 YPWLMKRI  320 (432)
T ss_pred             HHHHHHHh
Confidence            99998875

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=98.15  E-value=0.0031  Score=58.50  Aligned_cols=240  Identities=11%  Similarity=0.004  Sum_probs=134.5

Q ss_pred             HHHHHHHHHh--CCChhHHH-HHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccc
Q 021040           45 TYLLLFLTDI--GLSPRGAA-AVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTST  121 (318)
Q Consensus        45 ~~l~~~l~~~--gls~~~~g-~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~  121 (318)
                      ||+.+|+++.  |++..|+. -+.-+..-.....-.+...+.|..|.| |.++.+.+...+.+.++-+       .+  +
T Consensus        24 Pfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Yk-pviil~~~~~i~t~~lll~-------~~--s   93 (412)
T PF01770_consen   24 PFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYK-PVIILQALSYIITWLLLLF-------GT--S   93 (412)
T ss_pred             ccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHH-------HC--c
Confidence            7899999884  88888876 334444445556677889999988765 5466666665555543321       11  1


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchhHH
Q 021040          122 LKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQ  201 (318)
Q Consensus       122 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~  201 (318)
                      ...    .-+..+.+|.+.+ ..+++.+++-... |+++..++++.......+|..+++.++..++.. +       ..+
T Consensus        94 v~~----mq~~q~~yg~~~a-~evay~sYiys~v-~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~-~-------~~s  159 (412)
T PF01770_consen   94 VLA----MQLMQFFYGLATA-AEVAYYSYIYSVV-DKEHYQKVTSYTRAATLVGRFISSLLGQLLVSF-G-------GVS  159 (412)
T ss_pred             HHH----HHHHHHHHHHHHH-HHHHHHHHheeec-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c-------CCC
Confidence            221    1222233444444 3556666664444 345666788887788888888888887766653 1       134


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhccccccc-------c-----------c---c-cCC-----------CC-------chHH
Q 021040          202 YRWIAYSSIFIGCCFVGIFLSRTEEPRL-------K-----------M---G-LRG-----------NS-------HARI  241 (318)
Q Consensus       202 ~~~~~~i~~~~~~l~~~~~~~~~~e~~~-------~-----------~---~-~~~-----------~~-------~~~~  241 (318)
                      +.....+......+..++. +++|.+++       +           +   + +++           +.       ...+
T Consensus       160 y~~L~~isl~~~~~a~~~~-~fLP~~~~S~~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~  238 (412)
T PF01770_consen  160 YFQLNYISLASVSLALLIA-LFLPMPKRSLFFHRKPPAEQDANESESDKMNESPESSSSTEKSPSTESSSRKSVLRLLWK  238 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHcCCCCcccceeccCccccccccccccccccccccccccccCcccccchHHHHHHHHHH
Confidence            5545443322222222222 22332210       0           0   0 000           00       1224


Q ss_pred             HHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhccccc--cchhhHHHHHHHHHHHHHHHHHHHH
Q 021040          242 SWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMG--QSAKALVPAIIYICSFIVSILLQVI  309 (318)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~--~~~~~~~~~~~~v~~~i~~~~~~~i  309 (318)
                      .+++..+||.++.-.+-..+...++....+|.-.--.+...-+  ....+.+-.+..+.+.++++..+.+
T Consensus       239 ~~~~~y~~~~ll~WSlWWa~atcgy~qv~nYvQ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v  308 (412)
T PF01770_consen  239 DFKSCYSNPRLLLWSLWWAFATCGYYQVINYVQSLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYV  308 (412)
T ss_pred             HHHHHhcCchHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHh
Confidence            5566678888877777777888888777777655555541111  2345666555566666666666665

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=98.14  E-value=0.00021  Score=66.96  Aligned_cols=256  Identities=10%  Similarity=0.057  Sum_probs=141.0

Q ss_pred             HHHHHHHh--CCChhHHHHHHHHHHHHHHHHhhhhHHHhh-----hccCchHHHHHHHHHHHHHHHHHhCCCCC------
Q 021040           47 LLLFLTDI--GLSPRGAAAVMLSGQIADGFATIFIGELID-----RFGHFKIWHGAGSVLVAVSFSSVFGGCMP------  113 (318)
Q Consensus        47 l~~~l~~~--gls~~~~g~i~~~~~i~~~i~~p~~G~lsD-----r~Grr~~~l~~g~~~~~i~~~~~~~~~~~------  113 (318)
                      +|..+++.  +.|-+|.|....+.---  =...++..+.|     |+||||.|++..-.+.++.++.+-. .+.      
T Consensus        23 iPflL~~~~~~~sy~q~~~fSla~~Pf--SlKlLWaPiVDs~y~~~~GRRKSWiiP~Q~l~g~~m~~l~~-~i~~~~~~~   99 (544)
T PF13000_consen   23 IPFLLQSMAKKVSYSQQAIFSLASYPF--SLKLLWAPIVDSVYSKRIGRRKSWIIPIQYLSGILMLYLSY-NISQWLLFD   99 (544)
T ss_pred             chhhhccccCCCChhHheeeeeeechh--HHHHhhhhhhhhhcccccCCcchhhhHHHHHHHHHHHHHHh-ccchhhccc
Confidence            45566662  78888777553222111  12345566666     8999999988776666666554321 120      


Q ss_pred             ---Ccc-cCccc----hhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 021040          114 ---CRI-LSTST----LKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFI  185 (318)
Q Consensus       114 ---~~~-~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~  185 (318)
                         -.. .+..+    .....++...  ++.-+-.+-.+.+...+.-.+. .+++++-+...+..+.+.|..++..+.-.
T Consensus       100 ~~~d~~~~~~~~~~~~~~i~~Lt~~F--~~L~fl~ATQDIAVDGWALT~L-s~~n~~~ASTcqtvG~~~Gyfls~tvFla  176 (544)
T PF13000_consen  100 GVDDALLGQGESTVNNITIKFLTWFF--FILVFLCATQDIAVDGWALTML-SPENVGYASTCQTVGQTAGYFLSFTVFLA  176 (544)
T ss_pred             ccchhhhcCCCCcccccchhHHHHHH--HHHHHHHccCCceeehhhhhhc-ChhhcchHHHHHHhHhhhhHHHHHHHHHh
Confidence               000 00000    0100111111  1122334445666655554443 24678888888888888887776544311


Q ss_pred             HH-----HhhccCcccc----hhHHHHHHHHHHHHHHHHHHHHHHhccccccccc-----c---------c------CC-
Q 021040          186 VF-----SVSTAKTHAD----LENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKM-----G---------L------RG-  235 (318)
Q Consensus       186 l~-----~~~~~~~~~~----~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~-----~---------~------~~-  235 (318)
                      +-     +.+.+..+.+    ...+|-   .+-|...++..+...++-+|++..+     +         +      ++ 
T Consensus       177 lns~~f~Nky~r~~p~~~glvtl~~yl---~fwg~~~l~~T~~v~~~k~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (544)
T PF13000_consen  177 LNSPDFCNKYLRSTPSDEGLVTLSGYL---KFWGWVFLIVTILVAFFKKEKPHSESLPKIEPINKSDGKSKEISIEYDES  253 (544)
T ss_pred             hCCHHHHHHhcccCCCCCCeeeHHHHH---HHHHHHHHHHHHHHheEeecccccccCccccccccccccccccceecccc
Confidence            11     0010000111    011221   2223333444444556666653110     0         0      00 


Q ss_pred             C-------CchHHHH---HHHHhcHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhccccccchhhHHHHHHHHHHHHHHHH
Q 021040          236 N-------SHARISW---AYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSIL  305 (318)
Q Consensus       236 ~-------~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~v~~~i~~~~  305 (318)
                      +       .+.++.|   .+++|.|+...+++..+.+.+++.....-...-+.| .|++++.++.+..+.....++.++.
T Consensus       254 ~~~~~~~~~~i~~~Y~~l~~ilkLp~V~~li~ilL~~KigF~a~da~T~LKLlE-kG~~KE~LAl~~li~~P~qii~~~~  332 (544)
T PF13000_consen  254 DVISTEEILSIKDVYKSLWKILKLPNVQTLIIILLTAKIGFQANDAVTSLKLLE-KGLSKEDLALLVLIDFPFQIILPYY  332 (544)
T ss_pred             cccchhhhhhHHHHHHHHHHHHcCchHHHHHHHHHHHHhccccchhhhHHHHHH-cCCCHHHhHHHHHHhhhHHHHHHHH
Confidence            0       1123333   456788999999999999999988888877777777 4999999888888888899999999


Q ss_pred             HHHHHHh
Q 021040          306 LQVISLK  312 (318)
Q Consensus       306 ~~~i~~~  312 (318)
                      .+|+++-
T Consensus       333 ~~Kws~g  339 (544)
T PF13000_consen  333 IGKWSAG  339 (544)
T ss_pred             hhhhhcC
Confidence            9998764

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=98.14  E-value=2.2e-05  Score=75.35  Aligned_cols=173  Identities=15%  Similarity=0.125  Sum_probs=107.0

Q ss_pred             hhhhhcccchHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHH-HHHHHHHHH
Q 021040           25 SVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHG-AGSVLVAVS  103 (318)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~-~g~~~~~i~  103 (318)
                      ..+.+.++.....+...+-..+++.|..+.|.+..+++.++++..+.+.++.++.|+++|+...++.++. ++.+..+++
T Consensus       299 ~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~  378 (509)
T KOG2504|consen  299 KFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLA  378 (509)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHH
Confidence            3455566655555666666677888888889999999999999999999999999999999885555443 333443344


Q ss_pred             HHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHH
Q 021040          104 FSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIA  183 (318)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~  183 (318)
                      .  ++   .|  +..  +. ..+..+.   ++++++.+....-......|+.. .++-..+.++......++.+++    
T Consensus       379 ~--~~---~p--~~~--~~-~~l~~~~---~~fG~~~g~~~~l~~~i~~~~~g-~~~l~~a~Gl~l~~~gi~~l~g----  440 (509)
T KOG2504|consen  379 R--LF---LP--FAT--TY-VGLIVFS---ILFGFCVGSFSSLTPVILVDLVG-LEKLSNAYGLLLLFQGIGALVG----  440 (509)
T ss_pred             H--HH---HH--Hhc--cH-HHHHHHH---HHHHHHHHHHHHHHHHHHHHHcC-hhhcchHHHHHHHHhHHHHHcC----
Confidence            3  22   22  111  12 2233332   34666655554444445566654 3455677788777777666654    


Q ss_pred             HHHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHH
Q 021040          184 FIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIF  220 (318)
Q Consensus       184 ~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~  220 (318)
                      +|+.+.+-     |...+|...+...++..++...++
T Consensus       441 pPiag~~~-----d~tg~Y~~~f~~~g~~~~~s~~~~  472 (509)
T KOG2504|consen  441 PPIAGLLY-----DITGNYDHAFYFCGLCFLLSAVLL  472 (509)
T ss_pred             cccceeee-----eccCCeeeehhhcChHHHHHHHHH
Confidence            45555332     222347777777666655555443

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.14  E-value=0.00024  Score=65.88  Aligned_cols=128  Identities=13%  Similarity=0.014  Sum_probs=75.4

Q ss_pred             HHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCcc
Q 021040           42 CWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTS  120 (318)
Q Consensus        42 ~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~  120 (318)
                      ....+.+.++++. |.++.+.|++.....+...++.++.+++.||+||+.. .  +.....++....+.   + ......
T Consensus       225 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~-~--~~~~~~~~~~~~~~---~-~~~~~~  297 (394)
T PRK11652        225 VFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMW-Q--SVICCLLAGLLMWI---P-GWFGVM  297 (394)
T ss_pred             HHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H--HHHHHHHHHHHHHH---H-HHhccc
Confidence            3345567788885 9999999999888888888999999999999984333 2  22222222111110   0 000011


Q ss_pred             chhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHH
Q 021040          121 TLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAI  182 (318)
Q Consensus       121 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~  182 (318)
                      +.+..    .....+.+++.+...+...+...|..+  ++++...+..+...++|..+++.+
T Consensus       298 ~~~~~----~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~g~~~~~~~~~~~lg~~~~~~~  353 (394)
T PRK11652        298 NVWTL----LVPAALFFFGAGMLFPLATSGAMEPFP--YLAGTAGALLGGLQNIGSGLAALL  353 (394)
T ss_pred             cHHHH----HHHHHHHHHHHHHHHHHHHHHHHhhcc--ccchHHHHHHHHHHHHHHHHHHHH
Confidence            11211    111234556666656666666666553  567888888877777777665443

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.10  E-value=0.00048  Score=64.06  Aligned_cols=179  Identities=9%  Similarity=0.041  Sum_probs=104.9

Q ss_pred             hhhhhcccchHHHHHHHHHHHHHHHHHHHh----CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHH
Q 021040           25 SVLYYGSGHMLNDITAACWFTYLLLFLTDI----GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLV  100 (318)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~  100 (318)
                      +.+.+.+...+....+.+....++.|+++.    +.+....|.+.++..+..++.-.+...+.+|+|.|+.. +++...+
T Consensus       221 ~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~L-llag~i~  299 (412)
T PF01306_consen  221 NFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLL-LLAGVIM  299 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH-HHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHH-HHHHHHH
Confidence            334444444444444555555567777764    45667899999999999999999999999999999984 4555555


Q ss_pred             HHHHHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHH-HHHHHHHHHHH
Q 021040          101 AVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCR-NAFTMVANLSL  179 (318)
Q Consensus       101 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~-~~~~~~g~~~~  179 (318)
                      .+=+....       +.++  .+.    ..+...+.++-.+...++..-++.+..+ ++-.+++..+. +....+|..+.
T Consensus       300 ~iRi~~~~-------~~~~--~~~----i~~~klLH~~e~~l~lva~fkYI~~~fd-~rlsAt~y~v~~~~~~~~~~~i~  365 (412)
T PF01306_consen  300 AIRIIGSG-------FATN--PWV----ISLIKLLHALEFPLLLVAAFKYITAHFD-KRLSATLYLVGFQFAKQIGIIIL  365 (412)
T ss_dssp             HHHHHHHH-------T--S--HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHS--GGGHHHHHHHHHTTTHHHHHHHH
T ss_pred             HHHHHHHh-------hhcc--hHH----HHHHHHHHHHHHHHHHHHHHHHHHHhCC-HhHHHHHHHHHHHHHHHHHHHHH
Confidence            55443332       1221  221    1222344555556666665666666543 33344444432 34445555544


Q ss_pred             HHHHHHHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 021040          180 YAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPR  228 (318)
Q Consensus       180 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~  228 (318)
                      +.+.+.+.+          ..+++..+++.+.+.+.+.++..+..++++
T Consensus       366 s~~~G~lyd----------~~G~~~tylimg~iv~~~~li~~f~l~~~~  404 (412)
T PF01306_consen  366 SPLAGYLYD----------RIGFQHTYLIMGLIVLPFTLISAFTLKKDK  404 (412)
T ss_dssp             HHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHS--SS
T ss_pred             hhhHHhhHh----------hcCcHHHHHHHHHHHHHHHHHheeeecCCC
Confidence            444444433          356777788888887777777777766543

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.06  E-value=6.6e-06  Score=71.60  Aligned_cols=244  Identities=8%  Similarity=-0.031  Sum_probs=133.1

Q ss_pred             CCChhHHHHHHHHHHHHHHHHhhhhHHHhhh-ccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccchhHHHHHHHHHH
Q 021040           55 GLSPRGAAAVMLSGQIADGFATIFIGELIDR-FGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFA  133 (318)
Q Consensus        55 gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr-~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (318)
                      +++.++.-++.++++.-+.+...++|++.|| +|-|.--++.+...+.--  +.|.  .. ++.  +..+    ....-+
T Consensus        75 ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~Gq--liFa--~G-gi~--~aFw----~M~~GR  143 (459)
T KOG4686|consen   75 NIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQ--LIFA--AG-GIS--HAFW----TMLAGR  143 (459)
T ss_pred             ccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHH--HHHH--hc-hHH--HHHH----HHHhhh
Confidence            6777788899999999999999999999995 665543222222222111  1221  00 111  1122    223333


Q ss_pred             HHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCc--ccchhHHHHHHH-HHHH
Q 021040          134 AIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKT--HADLENQYRWIA-YSSI  210 (318)
Q Consensus       134 ~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~-~i~~  210 (318)
                      +++|+|.-...++.+.+....+. -||-..+.++.....-+|..+-..+.+++.+..+..-  .+....+....+ ...+
T Consensus       144 F~FGIGgESlAVaQN~yav~wFK-GKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~~~~~~~~ghT~LG~~l~~~~~tc  222 (459)
T KOG4686|consen  144 FLFGIGGESLAVAQNKYAVYWFK-GKELNFVFGLQLSVARLGSTVNFLLMPFLYDTMGRMFPGVGHTLLGLWLCFEVKTC  222 (459)
T ss_pred             eeeccCchhhhhhhcceeEEEec-CccccchhhHHHHHHHhhceeeeeecHHHHHHHHHhcccchHHHHHHHHHHHHHHH
Confidence            56777766667777877766654 4777888888887777777654444555554433211  111111211111 2223


Q ss_pred             HHHHHHHHHHHhcccccccc--cccCC---CCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhcccccc
Q 021040          211 FIGCCFVGIFLSRTEEPRLK--MGLRG---NSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQ  285 (318)
Q Consensus       211 ~~~~l~~~~~~~~~~e~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~  285 (318)
                      ....++++.. -...++.+.  +.++.   +.....+.+.  -.|++|.+....++......-+.+.-|.++++++|+++
T Consensus       223 ~~slical~l-g~~D~rAerilh~e~g~~Ge~pkLtdv~~--f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~  299 (459)
T KOG4686|consen  223 KQSLICALSL-GLSDDRAERILHLEEGFLGEEPKLTDVNT--FYPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSA  299 (459)
T ss_pred             HHHHHHHHHh-hhhhhHHHHHHhhhcCcccCCcccccccc--cCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCCh
Confidence            3334443322 111221111  01111   1111111111  13678888888888888888888888999999999997


Q ss_pred             chhhHHH----HHHHHHHHHHHHHHHHHHHhh
Q 021040          286 SAKALVP----AIIYICSFIVSILLQVISLKL  313 (318)
Q Consensus       286 ~~~~~~~----~~~~v~~~i~~~~~~~i~~~~  313 (318)
                      .+...+.    .+..+.+-+.+.+.||.++++
T Consensus       300 ~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~  331 (459)
T KOG4686|consen  300 VSAGNILSTVYGISAVLSPVFGAISDKYGFNL  331 (459)
T ss_pred             hhccchhhhhhhhhhhhhhhHHHhHhhhccee
Confidence            5444333    344455556666666666554

>TIGR00788 fbt folate/biopterin transporter

Probab=97.96  E-value=0.00018  Score=68.70  Aligned_cols=162  Identities=9%  Similarity=-0.019  Sum_probs=102.5

Q ss_pred             hCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCc---cchhHHHHHHH
Q 021040           54 IGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILST---STLKVETISYC  130 (318)
Q Consensus        54 ~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~---~~~~~~~~~~~  130 (318)
                      .|.++.++|++.....+...++..+.+++.+|++.|+. +.++.++.+++......  ....+...   ...+. .   .
T Consensus       283 lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~-l~~~~~l~~~~~~~~~~--l~~~~~~~~gi~~~~~-~---~  355 (468)
T TIGR00788       283 LPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLL-FGVTTLLYTLSSLFDLI--LVKRWNLAFGISDEVF-V---L  355 (468)
T ss_pred             CCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHH-HHHHHHHHHHHHhCcee--eeeccccccCCCCeee-e---e
Confidence            49999999999999999999999999999999998887 56677766665432210  00000000   00111 1   1


Q ss_pred             HHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchhHHHHHHHHHHH
Q 021040          131 VFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSI  210 (318)
Q Consensus       131 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~  210 (318)
                      ...++.+++.+....+...++.+..+ ++++++..++.+...++|..++..+++.+...++..  .| ..+-.|...+.+
T Consensus       356 ~~~~l~~~~~g~~~~~~~~~~~~~~p-~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~--~~-~~~~~~~~i~i~  431 (468)
T TIGR00788       356 GDSIIAEVLAQLKFMPFLVLLARLCP-SGCESSVFALLASILHLGSSVSGFLGVLLMETIGIT--CD-NSNNLWLLILGH  431 (468)
T ss_pred             ehhHHHHHHHHHHHccHHHHHHHhCC-CCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--cc-cccchHHHHHHH
Confidence            11134556666777777888888875 578899999999999999999888887777665521  11 122233333333


Q ss_pred             HHHHHHHHHHHhcccc
Q 021040          211 FIGCCFVGIFLSRTEE  226 (318)
Q Consensus       211 ~~~~l~~~~~~~~~~e  226 (318)
                      .+.-+..+....++|+
T Consensus       432 ~~~~l~~l~~~~llP~  447 (468)
T TIGR00788       432 SLAPLLPLPLLHLLPR  447 (468)
T ss_pred             HHHHHHHHHHHHhCCC
Confidence            3333333444457785

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=97.87  E-value=0.00058  Score=65.61  Aligned_cols=172  Identities=9%  Similarity=-0.008  Sum_probs=94.3

Q ss_pred             HHHHHHHHH-hCCCh----hHHHHHHHHHHHHHHHHhhhhHHHhhhccCchH------HHHHHHHHHHHHHHHHhC-C-C
Q 021040           45 TYLLLFLTD-IGLSP----RGAAAVMLSGQIADGFATIFIGELIDRFGHFKI------WHGAGSVLVAVSFSSVFG-G-C  111 (318)
Q Consensus        45 ~~l~~~l~~-~gls~----~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~------~l~~g~~~~~i~~~~~~~-~-~  111 (318)
                      ..++.|.++ .+.+.    -..+.+..+..+...+..|+.|.+.||.|||+.      -+.+|.++.++++..+.. . .
T Consensus       290 ~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~  369 (489)
T PRK10207        290 TSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMW  369 (489)
T ss_pred             cHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            456666664 22111    022344445556677889999999999998862      135677777766542210 0 0


Q ss_pred             CCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 021040          112 MPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVST  191 (318)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~  191 (318)
                      .. ......+.++....+    ++.++|.....++..+.+.+..| ++.++.+++..+....+|+.++..++......-.
T Consensus       370 ~~-~~~~~~s~~~~i~~~----~l~g~Ge~~~~~~g~~~~~~~aP-~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~  443 (489)
T PRK10207        370 FA-DAQGLTSPWFIVLVY----LFQSLGELFISALGLAMIAALVP-QHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDN  443 (489)
T ss_pred             hc-CCCCccCHHHHHHHH----HHHHHHHHHHhHHHHHHHHHhCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            00 000112334333333    45678888888777777777665 5778999999888888888776555422110000


Q ss_pred             cCcccchhHHHHHHHHHHHHHHHHHHHHHHh
Q 021040          192 AKTHADLENQYRWIAYSSIFIGCCFVGIFLS  222 (318)
Q Consensus       192 ~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~  222 (318)
                      ..++......+.+.+...++.++++.++.+.
T Consensus       444 ~~~~~~~~~~~~~~f~~~~~~~~~~~v~~~~  474 (489)
T PRK10207        444 ITDPLETLPVYTNVFGKIGLVTLGVAVVMAL  474 (489)
T ss_pred             cccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            0000001123566666666555555554433

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=97.83  E-value=0.00082  Score=64.32  Aligned_cols=143  Identities=10%  Similarity=-0.118  Sum_probs=86.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHh-CCCh----hHHHHHHHHHHHHHHHHhhhhHH----Hhhh-ccCchHH-HHHHHHHHHHH
Q 021040           35 LNDITAACWFTYLLLFLTDI-GLSP----RGAAAVMLSGQIADGFATIFIGE----LIDR-FGHFKIW-HGAGSVLVAVS  103 (318)
Q Consensus        35 ~~~~~~~~~~~~l~~~l~~~-gls~----~~~g~i~~~~~i~~~i~~p~~G~----lsDr-~Grr~~~-l~~g~~~~~i~  103 (318)
                      .....+.-..+.++.|..+. +.+.    ...+++.++-.+...+.+|+...    +.|| .+.+.+. +.+|.++.+++
T Consensus       283 ~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~  362 (475)
T TIGR00924       283 VFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGAS  362 (475)
T ss_pred             HHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHH
Confidence            33444444556677777663 3332    22678888888888888888664    4444 2222221 25677777777


Q ss_pred             HHHHhCCCCCCcc-cCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHH
Q 021040          104 FSSVFGGCMPCRI-LSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAI  182 (318)
Q Consensus       104 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~  182 (318)
                      +..+.. .....- ....+.++..+.+    ++.++|.....+...+++.+..| ++.|++..+.......+|..+++.+
T Consensus       363 ~~~~~~-~~~~~~~~~~~s~~~~i~~~----~~~~~ge~~~~p~~~~~~~~~aP-~~~~g~~~g~~~l~~~~g~~l~~~~  436 (475)
T TIGR00924       363 FLTFAA-SIWFADAGGLTSPWFMVLIY----LFQTLGELMISPLGLSWWTKIAP-QRLMGQMLGMWFLAQAMGSLLGGYL  436 (475)
T ss_pred             HHHHHH-HHhhcCCCCccCHHHHHHHH----HHHHHHHHHHhHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            654321 000000 0012344444433    45778888888888889988876 5789999999988888887776555


Q ss_pred             H
Q 021040          183 A  183 (318)
Q Consensus       183 ~  183 (318)
                      .
T Consensus       437 ~  437 (475)
T TIGR00924       437 A  437 (475)
T ss_pred             H
Confidence            4

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=97.79  E-value=0.0002  Score=69.27  Aligned_cols=167  Identities=13%  Similarity=-0.022  Sum_probs=85.3

Q ss_pred             HHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccC-----c
Q 021040           45 TYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILS-----T  119 (318)
Q Consensus        45 ~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~-----~  119 (318)
                      .|.+.++++.|.+... .+...+..+...++..+.+.+.||+|||+. ++.+...+.++...+..  .. ....     .
T Consensus       316 ~Y~~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr~l-ll~s~~~m~~~~~~~~~--~~-~~~~~~~~~~  390 (513)
T KOG0254|consen  316 YYSTTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRRKL-LLFGAAGMSICLVILAV--VG-VFALYYPNSS  390 (513)
T ss_pred             eehHHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccHHH-HHHhHHHHHHHHHHHHH--HH-HHhccCCCcc
Confidence            4566666666665332 344444555666667777999999999987 67788877777654421  10 0000     0


Q ss_pred             cchhHHHHHHHHHHHHHHHHHhhhHHhHh-hhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccch
Q 021040          120 STLKVETISYCVFAAIFNVGWAATQVAHM-SMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADL  198 (318)
Q Consensus       120 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~  198 (318)
                      ....+..+...   +++...++....+.. .+.+|+.| .+-|++..++....+.+.+.+...........         
T Consensus       391 ~~~~~~~~~~~---~~~v~~f~~g~g~v~w~~~sEifp-~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~---------  457 (513)
T KOG0254|consen  391 KGAGWLAIVFL---CLFIFSFAIGWGPVPWVIVSEIFP-LRLRSKGASLAVAVNWLWNFLISFFFPFITEA---------  457 (513)
T ss_pred             cchhHHHHHHH---HHHHHHHhcccccchhhhhhccCc-HhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHh---------
Confidence            01111111111   122223333222333 35577775 56788887776666555544332221111111         


Q ss_pred             hHHHHHHHHHHHHHHHHHHH-HHHhcccccccc
Q 021040          199 ENQYRWIAYSSIFIGCCFVG-IFLSRTEEPRLK  230 (318)
Q Consensus       199 ~~~~~~~~~i~~~~~~l~~~-~~~~~~~e~~~~  230 (318)
                       .+....+..++..+.+... ..++++||++..
T Consensus       458 -~~~~~~f~~f~~~~~~~~~~fv~~~~pETkg~  489 (513)
T KOG0254|consen  458 -LGIGGTFGYFGGICLLSLIIFVFFFVPETKGL  489 (513)
T ss_pred             -ccccchHHHHHHHHHHHHHHHheEEcccCCCC
Confidence             1123345455555555555 566788997543

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=97.78  E-value=0.00012  Score=69.85  Aligned_cols=83  Identities=17%  Similarity=0.152  Sum_probs=64.4

Q ss_pred             hhhhhcccchHHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhh----ccCchHHHHHHHHH
Q 021040           25 SVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDR----FGHFKIWHGAGSVL   99 (318)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr----~Grr~~~l~~g~~~   99 (318)
                      +.+.+++..+...+..+....++|.|+++. |.|..+.+.+.....+..+++.++.|.++||    +.+|..+.....+.
T Consensus       274 ~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~  353 (495)
T KOG2533|consen  274 GVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLY  353 (495)
T ss_pred             hHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            355777777777788777888999999995 8999999999999999999999999999999    66666544433344


Q ss_pred             HHHHHHHH
Q 021040          100 VAVSFSSV  107 (318)
Q Consensus       100 ~~i~~~~~  107 (318)
                      ..++...+
T Consensus       354 ~~~g~~~l  361 (495)
T KOG2533|consen  354 AIIGAISL  361 (495)
T ss_pred             HHHHHHHH
Confidence            44443433

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=97.75  E-value=0.0016  Score=61.03  Aligned_cols=75  Identities=11%  Similarity=0.053  Sum_probs=52.5

Q ss_pred             cccchHHHHHHHHHHHHHHHHHHHh--CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHH
Q 021040           30 GSGHMLNDITAACWFTYLLLFLTDI--GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFS  105 (318)
Q Consensus        30 ~~~~~~~~~~~~~~~~~l~~~l~~~--gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~  105 (318)
                      .++.+..........++++.|.++.  +.+....+...+.......++..+.|++.||+++||. +.+..+..++...
T Consensus       238 ~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~-l~i~~~~~~~~~l  314 (410)
T TIGR00885       238 VIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKV-LMAYAIIGMALCL  314 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHH-HHHHHHHHHHHHH
Confidence            3344445555545668899998875  5666666666666677788999999999999999887 4455555555444

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=97.75  E-value=0.00014  Score=65.66  Aligned_cols=137  Identities=9%  Similarity=-0.017  Sum_probs=85.1

Q ss_pred             HHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhH
Q 021040           65 MLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQ  144 (318)
Q Consensus        65 ~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  144 (318)
                      +.+..+....+.++.+.+.||+||||. |-...+++++..++++. |.    ..+   ....+ .    +...++.+...
T Consensus       387 llitslaefPGlLIt~~iverlGRKkT-Mal~l~~f~iflfll~~-c~----~rn---~~tvl-l----f~arafisg~f  452 (528)
T KOG0253|consen  387 LLITSLAEFPGLLITGVIVERLGRKKT-MALSLILFGIFLFLLTT-CK----TRN---AYTVL-L----FTARAFISGAF  452 (528)
T ss_pred             HHHHHHhhCCchhHHHHHHHHhcchhH-HHHHHHHHHHHHHHHHH-hc----Ccc---hhHHH-H----HHHHHHHhchh
Confidence            345567778889999999999999999 66778888887766653 21    111   11111 1    11222222222


Q ss_pred             HhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhcc
Q 021040          145 VAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRT  224 (318)
Q Consensus       145 ~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~  224 (318)
                      .....+.+|+.|. +-|+...|..+.+.-+|+++.+.++  +...          .+-.....+++.++++..+..+++-
T Consensus       453 qvaYvYtPEVyPT-avRatgvGtcSsmaRIggI~~p~iA--~~~e----------~s~sl~i~vy~~~~ilagIavcffP  519 (528)
T KOG0253|consen  453 QVAYVYTPEVYPT-AVRATGVGTCSSMARIGGIFSPVIA--MRAE----------LSTSLPIFVYGALFILAGIAVCFFP  519 (528)
T ss_pred             eEEEEecCcccch-hhhhcchhhhhhHHhhhhhhhhHHH--HHhc----------cceeehHHHHHHHHHHHHHHheeee
Confidence            2335677888864 6898888888888888888776654  2211          1223344667777777777776665


Q ss_pred             cccc
Q 021040          225 EEPR  228 (318)
Q Consensus       225 ~e~~  228 (318)
                      -|++
T Consensus       520 iEtk  523 (528)
T KOG0253|consen  520 IETK  523 (528)
T ss_pred             eccC
Confidence            5553

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.70  E-value=0.005  Score=58.09  Aligned_cols=234  Identities=9%  Similarity=-0.053  Sum_probs=122.6

Q ss_pred             HHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhH
Q 021040           65 MLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQ  144 (318)
Q Consensus        65 ~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  144 (318)
                      .++-.....+...+.+.+.|+.|.|.. +.+|...........+.        .+  ....+    +-.++.|+|.+...
T Consensus        56 ~aiiY~~ftv~~l~~psiv~~i~~K~~-lv~ga~~y~~f~~gfl~--------~N--~y~~y----fssallG~Gaallw  120 (461)
T KOG3098|consen   56 QAIIYAFFTVSCLFAPSIVNFLGPKWA-LVIGATCYAAFPLGFLF--------PN--SYYLY----FSSALLGFGAALLW  120 (461)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHhhHHHH-HHHHhHHHHHHHHHHHh--------cc--hHHHH----HHHHHhhhhHHhee
Confidence            444455566888999999999999988 56676665554332221        12  12111    22356788888777


Q ss_pred             HhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCc----ccchh-------HHHHHH--HHHHHH
Q 021040          145 VAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKT----HADLE-------NQYRWI--AYSSIF  211 (318)
Q Consensus       145 ~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~----~~~~~-------~~~~~~--~~i~~~  211 (318)
                      .....+..+... ++.+++..++.......+.++|+++. .++.......    .++..       ......  +.+...
T Consensus       121 ~GqG~ylt~~st-~~tie~Nisi~Wai~~~~li~Ggi~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~  198 (461)
T KOG3098|consen  121 TGQGGYLTSNST-RETIERNISIFWAIGQSSLIIGGIIL-FIYFQFSSSSAIITDGTRRLVFEVLFIDFEIKVLFGVLLA  198 (461)
T ss_pred             cccceehhhcCC-hhhHHHHHHHHHHHHHHHHHhhhHhh-eeeeEecccccccccchhhhhcchhhhhHHHHHHHHHHHH
Confidence            777777777653 45667777766666666655554332 1111221110    01100       001111  111111


Q ss_pred             HHHHHHHHHHhcccccccccccCCC-CchHHHHH---HHHhcHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhccccc--c
Q 021040          212 IGCCFVGIFLSRTEEPRLKMGLRGN-SHARISWA---YWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMG--Q  285 (318)
Q Consensus       212 ~~~l~~~~~~~~~~e~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~--~  285 (318)
                      +..+.. +...+.|.++...+.+.. ....+..+   +++++|+.+.+....+...+........+|..+...++..  .
T Consensus       199 ~~~l~~-i~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~ml~L~~~f~~tG~~~Sf~~~iypt~i~ft~~~~~n~  277 (461)
T KOG3098|consen  199 ISVLSI-INFDFLPSKDVVNCKSSSETSFSELLKLTFKLLKTPKMLLLFPFFFYTGLETSFWISIYPTCISFTRKLGSNT  277 (461)
T ss_pred             HHHHHh-hheeecCccchhhhhhhccccHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHhccchhhhhhhhccCcc
Confidence            111111 111222222111111111 23333333   5567788877777666666666666667777776664433  2


Q ss_pred             c-hhhHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 021040          286 S-AKALVPAIIYICSFIVSILLQVISLKLYSM  316 (318)
Q Consensus       286 ~-~~~~~~~~~~v~~~i~~~~~~~i~~~~~~~  316 (318)
                      . ..+.......++.++++.....++||.++.
T Consensus       278 ~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~f  309 (461)
T KOG3098|consen  278 TYLIAIYSIGIGLGEVIGGLDFSILSKRIRGF  309 (461)
T ss_pred             hhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhc
Confidence            2 334444566677888888888888888763

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=97.69  E-value=0.0029  Score=59.33  Aligned_cols=50  Identities=14%  Similarity=0.133  Sum_probs=37.9

Q ss_pred             HHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchH
Q 021040           42 CWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKI   91 (318)
Q Consensus        42 ~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~   91 (318)
                      .+..+.|.++++. |.++.+.++..........++..+.+.+.+|.+++|.
T Consensus       236 ~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~  286 (413)
T PRK15403        236 SWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRF  286 (413)
T ss_pred             HHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhH
Confidence            3445567888887 9999999999877777777888888887765555444

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=97.65  E-value=6.8e-05  Score=70.68  Aligned_cols=66  Identities=17%  Similarity=0.226  Sum_probs=56.0

Q ss_pred             HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHH
Q 021040           42 CWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSV  107 (318)
Q Consensus        42 ~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~  107 (318)
                      ...+.++.|.+++|+++.++|.+...-.+..++..|++|.++||+-|||+.++.+.+....+.+++
T Consensus        29 ~l~pll~vy~kQLGl~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl~~~v~a~fll   94 (618)
T KOG3762|consen   29 SLFPLLAVYFKQLGLNPAVVGTLTGTLPLVEFLAAPLWGFLADRYRKRRPLLLGSLLLSVTATFLL   94 (618)
T ss_pred             ccchHHHHHHHHcCCCHHHhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhe
Confidence            466889999999999999999999999999999999999999999999996655555555554444

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=97.59  E-value=0.019  Score=52.93  Aligned_cols=168  Identities=12%  Similarity=0.027  Sum_probs=104.6

Q ss_pred             HHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhh-ccCchHHHHHHHHHHHHHHHHHhCCCCCCccc
Q 021040           40 AACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDR-FGHFKIWHGAGSVLVAVSFSSVFGGCMPCRIL  117 (318)
Q Consensus        40 ~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr-~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~  117 (318)
                      ..+....+=||=-|+ |+|..+...+.........++-...|++..| .++++. ..+|....++++..+.. +   +..
T Consensus       224 ~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~-a~~G~~~~~~~f~lii~-a---~~~  298 (403)
T PF03209_consen  224 FFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRT-AALGCLLGALAFALIIL-A---GPL  298 (403)
T ss_pred             HHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHH-HHHHHHHHHHHHHHHHH-H---Hhc
Confidence            334444555777776 9999999999988888888888899999884 555554 67788887777665421 1   111


Q ss_pred             CccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccc
Q 021040          118 STSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHAD  197 (318)
Q Consensus       118 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~  197 (318)
                        .+.+.+...    .+++|++.+...+..-+.+-|++. +++.+...+........+..++..+++.+.+........+
T Consensus       299 --~~~~~~~~~----~~l~G~g~G~f~vgals~mM~lt~-~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~  371 (403)
T PF03209_consen  299 --GSPWLFRPG----VFLLGLGNGLFTVGALSLMMDLTS-AGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNS  371 (403)
T ss_pred             --ccchHHHHH----HHHHHHhhhHHHHHHHHHHHhCCC-CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence              122322221    246788888888777777778875 3455666666666666666666666666554321111112


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHH
Q 021040          198 LENQYRWIAYSSIFIGCCFVGI  219 (318)
Q Consensus       198 ~~~~~~~~~~i~~~~~~l~~~~  219 (318)
                      ...+|...|.+-+.+.+++.++
T Consensus       372 ~~~aY~~VF~lEa~ll~~a~~l  393 (403)
T PF03209_consen  372 PALAYGVVFALEAVLLLAALVL  393 (403)
T ss_pred             cchHHHHHHHHHHHHHHHHHHH
Confidence            3467777776655554444433

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=97.58  E-value=0.041  Score=47.59  Aligned_cols=152  Identities=13%  Similarity=0.066  Sum_probs=86.5

Q ss_pred             HHHHHHHHHHHHhCCCh--hHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCc
Q 021040           42 CWFTYLLLFLTDIGLSP--RGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILST  119 (318)
Q Consensus        42 ~~~~~l~~~l~~~gls~--~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~  119 (318)
                      ......+.+..+.+.+.  .+.+++.....+...+.+++.|.++||+|||+. +..+.....++......  .     .+
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~-~~~~~~~~~~~~~~~~~--~-----~~   91 (338)
T COG0477          20 LLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKV-LIIGLLLFLLGTLLLAL--A-----PN   91 (338)
T ss_pred             hHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHH-HHHHHHHHHHHHHHHHh--C-----cc
Confidence            34445556666665555  588999999999999999999999999999976 44455433333222211  1     11


Q ss_pred             cchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHH-HHHHHHHHHHHHHHHHHHhhccCcccch
Q 021040          120 STLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNA-FTMVANLSLYAIAFIVFSVSTAKTHADL  198 (318)
Q Consensus       120 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~-~~~~g~~~~~~~~~~l~~~~~~~~~~~~  198 (318)
                      .......    +.....+++.+...+...++..|..++.++|+...+.... ...+|..+++.+++.+... .       
T Consensus        92 ~~~~~~~----~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------  159 (338)
T COG0477          92 VGLALLL----ILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA-L-------  159 (338)
T ss_pred             chHHHHH----HHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-------
Confidence            1112112    2222355666666666677888876430357776666655 3555555554333333222 1       


Q ss_pred             hHHHHHHHHHHHHHH
Q 021040          199 ENQYRWIAYSSIFIG  213 (318)
Q Consensus       199 ~~~~~~~~~i~~~~~  213 (318)
                      ...|++.+.+.....
T Consensus       160 ~~~~~~~~~~~~~~~  174 (338)
T COG0477         160 LWGWRAAFLLAALLG  174 (338)
T ss_pred             hcchHHHHHHHHHHH
Confidence            246777555544444

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=97.54  E-value=0.012  Score=56.27  Aligned_cols=154  Identities=11%  Similarity=0.084  Sum_probs=90.8

Q ss_pred             HHHHHHHHHHHHHhhhhHHHhhhccC-chHHHHHHHHHHHHHHHHHhC-CCCCC----------cccCccchhHHHHHHH
Q 021040           63 AVMLSGQIADGFATIFIGELIDRFGH-FKIWHGAGSVLVAVSFSSVFG-GCMPC----------RILSTSTLKVETISYC  130 (318)
Q Consensus        63 ~i~~~~~i~~~i~~p~~G~lsDr~Gr-r~~~l~~g~~~~~i~~~~~~~-~~~~~----------~~~~~~~~~~~~~~~~  130 (318)
                      +.+....+...+.+.+.-.+.+|+|+ |+.| ..+.++.++++....+ ...+.          .+.++....+.   .+
T Consensus       309 ~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~-~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~---~l  384 (477)
T TIGR01301       309 FGLMLNSVVLGITSIGMEKLCRGWGAGKRLW-GIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKAS---AL  384 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccchhHH-HHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHH---HH
Confidence            45566666666777888888999996 4554 5676677776654431 00000          00000000111   11


Q ss_pred             HHHHHHHHHHhhhHHhHhhhccccccC-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchhHHHHHHHHHH
Q 021040          131 VFAAIFNVGWAATQVAHMSMVNCITLN-STSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSS  209 (318)
Q Consensus       131 ~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~  209 (318)
                      +...+.|+.++.....=.+++++..++ .++.|...++.|.+..+.+++.+...+++...+++        +-.+.+.+.
T Consensus       385 ~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~--------~~~~~~~~~  456 (477)
T TIGR01301       385 IVFAILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGG--------GNLPAFVVG  456 (477)
T ss_pred             HHHHHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCC--------CCeeHHHHH
Confidence            222457788876544334555555543 23458889999999999999988777775555442        223455666


Q ss_pred             HHHHHHHHHHHHhcccccc
Q 021040          210 IFIGCCFVGIFLSRTEEPR  228 (318)
Q Consensus       210 ~~~~~l~~~~~~~~~~e~~  228 (318)
                      ++..++.++...+.+|+++
T Consensus       457 gv~~~~aa~~~~~~~~~~~  475 (477)
T TIGR01301       457 AVAAFVSGLLALILLPRPR  475 (477)
T ss_pred             HHHHHHHHHHHHHhCCCCC
Confidence            6677777777777777754

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.52  E-value=0.00052  Score=62.68  Aligned_cols=183  Identities=14%  Similarity=0.140  Sum_probs=100.1

Q ss_pred             CCCCCCCchhhhh-----hcccc-hHHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccC
Q 021040           16 SFTQPVGRWSVLY-----YGSGH-MLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGH   88 (318)
Q Consensus        16 ~~~~~~~~~~~~~-----~~~~~-~~~~~~~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Gr   88 (318)
                      .++++.++|+.+.     ...+. .......+..-+-++.|..|. ..+..++|++..-..+..+++.++.|.++||+++
T Consensus       256 ~~~~~~~~~~Ll~dP~I~~~agai~~~n~~lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~  335 (464)
T KOG3764|consen  256 STEQGTPMWSLLMDPYILLIAGAITFSNSSLAFLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPH  335 (464)
T ss_pred             ccccCccHHHHHhCchHhhhhcchhhccchHHHhCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhcCc
Confidence            4556666776542     22221 111223333446678888886 7677799999999999999999999999999995


Q ss_pred             chHHHHHHHHHHHHHHHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHH---hHhhhccccccCc--cchhH
Q 021040           89 FKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQV---AHMSMVNCITLNS--TSRVV  163 (318)
Q Consensus        89 r~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~--~~R~~  163 (318)
                      -| |+....-+..++.. ..  ++|  +.+  +...+.+-.    +..+++.+..+.   |......|..++.  +-.+.
T Consensus       336 ~~-wl~~~~gl~~~G~~-~~--~iP--~~~--~~~~L~vp~----~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGs  403 (464)
T KOG3764|consen  336 LR-WLLSLGGLATVGVS-SG--PIP--FAT--SIAQLWVPN----FGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGS  403 (464)
T ss_pred             hh-HHHHHHHHHHHHHH-hc--hhH--hhh--hHHHHhhhh----HHHHHHHHHHHHHHhhhhHHhcchhhccccceeee
Confidence            44 33222222222221 11  233  111  122111111    223333333333   3233333332211  13466


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHH
Q 021040          164 LTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIF  220 (318)
Q Consensus       164 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~  220 (318)
                      ..++...+..+|..+++.+++.++.          ..+|+|...+.++..++-+.+.
T Consensus       404 VyaIad~a~sla~a~GP~~gg~iv~----------~iGF~wl~~iig~~n~iyapvl  450 (464)
T KOG3764|consen  404 VYAIADAAFSLAYAIGPTFGGSLVE----------AIGFEWLMTIIGILNLIYAPVL  450 (464)
T ss_pred             HHHHHHHHHHHhhhccccccchhee----------ehhHHHHHHHHHHHHHHHHHHH
Confidence            7777777767777666655544442          3678999888877776666544

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=97.41  E-value=0.011  Score=56.95  Aligned_cols=113  Identities=12%  Similarity=0.006  Sum_probs=69.3

Q ss_pred             HHHHHHHHHHHHHHHhhhh----HHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccC---ccchhHHHHHHHHHH
Q 021040           61 AAAVMLSGQIADGFATIFI----GELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILS---TSTLKVETISYCVFA  133 (318)
Q Consensus        61 ~g~i~~~~~i~~~i~~p~~----G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~  133 (318)
                      .++..++-.+...+..|+.    +++.||.+.++. +.+|.++.++++..+..  .. ...+   ..+.++....+    
T Consensus       318 ~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~-~~~G~~l~~l~f~~l~~--~~-~~~~~~~~vs~~~~~~~~----  389 (500)
T PRK09584        318 PEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHK-FAIGMVLCSGAFLVLPL--GA-KFANDAGIVSVNWLIASY----  389 (500)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHH-HHHHHHHHHHHHHHHHH--HH-HhcCCCCccCHHHHHHHH----
Confidence            4555666666666777777    555555555455 56788888888765431  00 0000   01123333333    


Q ss_pred             HHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHH
Q 021040          134 AIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAI  182 (318)
Q Consensus       134 ~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~  182 (318)
                      ++.++|.....+...+++.+..| ++.|+++.+.......+|..+++.+
T Consensus       390 ~l~~~ge~~~~p~g~s~~~~~aP-~~~rg~~~g~~~l~~a~g~~~~g~~  437 (500)
T PRK09584        390 GLQSIGELMISGLGLAMVAQLVP-QRLMGFIMGSWFLTTAGAALIAGYV  437 (500)
T ss_pred             HHHHHHHHHHhHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677887777777888888876 5789999998776666666554433

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=97.12  E-value=1.4e-06  Score=82.34  Aligned_cols=163  Identities=13%  Similarity=-0.020  Sum_probs=83.9

Q ss_pred             HHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccc---hh
Q 021040           47 LLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTST---LK  123 (318)
Q Consensus        47 l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~---~~  123 (318)
                      .+..+++.|.+..  -.......+...++.++...+.||+|||+. ++.+....+++...+..   ......+.+   ..
T Consensus       276 ~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~-~i~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~  349 (451)
T PF00083_consen  276 SPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRKL-LIIGLLLMAICSLILGI---IFFLGVSSSSWWSI  349 (451)
T ss_pred             ccccccccccccc--cccccccccccccccccccccccccccccc-ccccccccccccccccc---cccccccccccccc
Confidence            3333344466665  111223335556677778899999999988 45676666655443310   000111110   11


Q ss_pred             HHHHHHHHHHHHHHHHHh-hhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchhHHH
Q 021040          124 VETISYCVFAAIFNVGWA-ATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQY  202 (318)
Q Consensus       124 ~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~  202 (318)
                      ......    .+...+++ ...+....+.+|+.| .+.|.+..++......+++.+++.+...+...          .+-
T Consensus       350 ~~i~~~----~l~~~~~~~g~~~~~~~~~~ElfP-t~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~----------~~~  414 (451)
T PF00083_consen  350 LSIVFL----ALFFAFFSLGWGPLPWIYTAELFP-TKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNN----------LGG  414 (451)
T ss_pred             ccceee----eecccccccccccccccccccccc-cccccccccccccccccccccccccccccccc----------ccc
Confidence            111111    11212222 122233466789886 47888888877776666665544332222211          111


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcccccccc
Q 021040          203 RWIAYSSIFIGCCFVGIFLSRTEEPRLK  230 (318)
Q Consensus       203 ~~~~~i~~~~~~l~~~~~~~~~~e~~~~  230 (318)
                      ...+.+.+.++.+..+..++++||++.+
T Consensus       415 ~~~~~i~~~~~~i~~i~~~~~lpET~g~  442 (451)
T PF00083_consen  415 WGVFLIFAGVCLIAIIFVYFFLPETKGK  442 (451)
T ss_pred             cccchhhHHHHHHHHhheeEEEeeCCCC
Confidence            2234555566666767778889998644

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=96.95  E-value=0.075  Score=49.01  Aligned_cols=138  Identities=10%  Similarity=0.005  Sum_probs=85.7

Q ss_pred             hhhcccchHHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHH
Q 021040           27 LYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFS  105 (318)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~  105 (318)
                      ....++.|...........+++.|+.|. |++..+.+..++.+....+++..+.-++..|+...|.+...+.....+...
T Consensus       239 ~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~  318 (422)
T COG0738         239 RLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLA  318 (422)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence            4455666777777777888999999995 999999999999999999999988888888998888754443333333322


Q ss_pred             HHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHH
Q 021040          106 SVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAI  182 (318)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~  182 (318)
                      ..+        .++  ..   ..+.+  .+.++..+...+...++..+..++   .++..+..-.+..+|+++.+.+
T Consensus       319 ~~l--------~~g--~v---~~~~l--~~ig~F~simfPTIfslal~~l~~---~ts~~s~~l~maivGGAiiP~l  377 (422)
T COG0738         319 VAL--------IGG--VV---ALYAL--FLIGLFNSIMFPTIFSLALKNLGE---HTSVGSGLLVMAIVGGAIIPPL  377 (422)
T ss_pred             HHH--------hcC--hH---HHHHH--HHHHHHhHHHHHHHHHHHHhccCc---cccccceeeeeheecchHHHHH
Confidence            222        111  11   11221  235566666666666665555542   2233333334445565544433

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=96.71  E-value=0.0018  Score=56.29  Aligned_cols=42  Identities=14%  Similarity=0.238  Sum_probs=35.9

Q ss_pred             HhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHH
Q 021040           53 DIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHG   94 (318)
Q Consensus        53 ~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~   94 (318)
                      ..|.-+.++|.+...+.-...+...+.|.++||-||||..+.
T Consensus        66 tYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvt  107 (454)
T KOG4332|consen   66 TYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVT  107 (454)
T ss_pred             hcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceee
Confidence            348889999999888777788889999999999999998543

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=96.68  E-value=0.0021  Score=59.91  Aligned_cols=181  Identities=13%  Similarity=-0.032  Sum_probs=93.1

Q ss_pred             chHHHHHHHHHHHHHHHHHHHhCCChhHHHH----HHHHH-----HHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHH
Q 021040           33 HMLNDITAACWFTYLLLFLTDIGLSPRGAAA----VMLSG-----QIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVS  103 (318)
Q Consensus        33 ~~~~~~~~~~~~~~l~~~l~~~gls~~~~g~----i~~~~-----~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~  103 (318)
                      .|..++..+..+.+....++.+|..+.....    -.+..     ......+.++..+++|+.|||+. .+-|..++.+.
T Consensus       313 WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~i-q~~GF~~~~i~  391 (538)
T KOG0252|consen  313 WFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYI-QLMGFFIMTIF  391 (538)
T ss_pred             HHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHH-HHhhHHHHHHH
Confidence            3445555544445555555655544332222    12222     22233466677788999999988 56788887777


Q ss_pred             HHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHH
Q 021040          104 FSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIA  183 (318)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~  183 (318)
                      ++.+.   .|.  .+..+....++.|.+..++..+|=+.   .....-+|.+| .+-|+...++..+.+-.|++++....
T Consensus       392 ~~~~~---~~y--~~~~~~~Gf~v~y~l~~ff~NFGPn~---ttfivpaE~FP-arvR~t~hGIsAA~GK~GAivg~~~F  462 (538)
T KOG0252|consen  392 FFVIA---GPY--NQLENTIGFVVLYSLTFFFGNFGPNA---TTFIVPAEIFP-ARVRSTCHGISAASGKAGAIVGAFGF  462 (538)
T ss_pred             HHHHc---CCc--ccccccCceeehHHHHHHHHhcCCCc---eeEEeehhhch-HHHhhhhhhHHHHhccchHHHHHHHh
Confidence            66553   221  11111111223332221222222111   11223356665 46788888887777777777665544


Q ss_pred             HHHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhccccccc
Q 021040          184 FIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRL  229 (318)
Q Consensus       184 ~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~  229 (318)
                      .++...- .  +  ...+.++.+++.+.++++..+. .+++||+..
T Consensus       463 ~~~t~~~-y--p--~~~g~~~v~~i~~~~~~~gi~~-T~l~pEtk~  502 (538)
T KOG0252|consen  463 LYLTDHN-Y--P--PNIGVRNVFIILAGCMLLGILF-TLLIPETKG  502 (538)
T ss_pred             hHhhhcc-C--C--ccccchHHHHHHHHHHHHhHhe-eEEeecccc
Confidence            3433210 0  0  1245678888877666655444 456678743

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=96.49  E-value=0.86  Score=43.78  Aligned_cols=133  Identities=10%  Similarity=0.051  Sum_probs=71.3

Q ss_pred             HhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-CcccchhHHHHH----HHHHHHHHHHHHHHHHH
Q 021040          147 HMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTA-KTHADLENQYRW----IAYSSIFIGCCFVGIFL  221 (318)
Q Consensus       147 ~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~----~~~i~~~~~~l~~~~~~  221 (318)
                      ..++..|+++ .+|-.+..+....++++|.++++.+...+...... ...+  ...|..    ...+..+.+.+...+..
T Consensus       165 FW~fAN~itt-~~eAKRfYpl~g~ganigli~sG~~~~~~~~~~~~~~~~~--~~~~~~~l~~l~~~v~~~g~~i~~~~~  241 (491)
T PF03219_consen  165 FWGFANEITT-VEEAKRFYPLFGLGANIGLIFSGQLTSYFSSFLRKSLPAG--VDAWELSLNSLMGIVLILGIVIILLYR  241 (491)
T ss_pred             HHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc--cccHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            5677778764 56777888988888888888766554443331110 0001  122322    22222222222222221


Q ss_pred             hc----cccccc------ccccCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhccc
Q 021040          222 SR----TEEPRL------KMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLR  282 (318)
Q Consensus       222 ~~----~~e~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g  282 (318)
                      ..    .+++..      +++++++.+.+++++.++|+|.++.+++...+.....+....-.-..+++.+.
T Consensus       242 ~~~~~vl~~~~~~~~~~~~kk~k~k~s~~es~k~l~kS~yL~~Ia~lvi~Ygi~inLvE~~wK~~lk~~~~  312 (491)
T PF03219_consen  242 YMNKNVLTDPRFYPSAKKKKKKKPKMSLKESFKLLLKSKYLLCIALLVIAYGISINLVEVVWKSQLKQLYP  312 (491)
T ss_pred             HHHHHccCccccchhhhcccccCCCccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence            11    111111      11122345677899999999988888777777777766666655555555443

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=96.45  E-value=0.23  Score=39.96  Aligned_cols=102  Identities=14%  Similarity=0.009  Sum_probs=63.3

Q ss_pred             HHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhH
Q 021040           65 MLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQ  144 (318)
Q Consensus        65 ~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  144 (318)
                      +++.-...++..++.+.+.+|.|.|+. +.+|.+...+-....+.   |     +  .+..    ....++.|++.+..-
T Consensus        43 lai~Y~~~~~s~l~~P~iv~~lg~K~s-m~lg~~~y~~y~~~~~~---~-----~--~~~l----~~~s~l~G~~~a~lW  107 (156)
T PF05978_consen   43 LAILYGSFAISCLFAPSIVNKLGPKWS-MILGSLGYAIYIASFFY---P-----N--SYTL----YPASALLGFGAALLW  107 (156)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHh---h-----h--HHHH----HHHHHHHhhhhHHhh
Confidence            334444456677788889999999988 56777766655433221   1     1  1111    222346778888777


Q ss_pred             HhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHH
Q 021040          145 VAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAI  182 (318)
Q Consensus       145 ~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~  182 (318)
                      .+...++.+.. ++++|++-.++.......+.++|..+
T Consensus       108 ~aqg~ylt~~s-~~~~~~~~~~ifw~i~~~s~i~G~~~  144 (156)
T PF05978_consen  108 TAQGTYLTSYS-TEETIGRNTGIFWAIFQSSLIFGNLF  144 (156)
T ss_pred             HhhhHHHHHcC-CHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            77777777765 45778887777666656555555443

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=96.37  E-value=0.028  Score=53.62  Aligned_cols=140  Identities=16%  Similarity=0.076  Sum_probs=87.9

Q ss_pred             HHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcc
Q 021040           37 DITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRI  116 (318)
Q Consensus        37 ~~~~~~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~  116 (318)
                      ......+.+|+--+++|.|-.+...|.+...--..-.+.-++.+.+..|.|+-+. +..|+....+=++..-   .    
T Consensus       384 G~g~~lv~tFLfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v-~~lgLa~~~~Rf~~~S---~----  455 (618)
T KOG3762|consen  384 GAGVGLVFTFLFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNV-MYLGLACNVGRFLYYS---Y----  455 (618)
T ss_pred             HHHHHHHHHHHHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccce-eeehhhHHHHHHHHHH---H----
Confidence            3444455566655566678788888877777777778889999999999999988 5667666555443221   1    


Q ss_pred             cCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHH-HHHHHHHHHHHHHHHHHHHHHhhc
Q 021040          117 LSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSC-RNAFTMVANLSLYAIAFIVFSVST  191 (318)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~-~~~~~~~g~~~~~~~~~~l~~~~~  191 (318)
                      ..  +.| ..+   -+-++.++..+.......+++.+..| ++-|+.+.++ +...-.+|--+|+++++.++..++
T Consensus       456 L~--n~W-~vL---Pieilqgit~aliWaa~~sY~s~vaP-p~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg  524 (618)
T KOG3762|consen  456 LQ--NPW-MVL---PIEILQGITHALIWAAIISYASHVAP-PGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFG  524 (618)
T ss_pred             hc--Cch-hee---eHHHHHHHHHHHHHHHHHHHHHhhCC-CcchHHHHHHHHHHhcccCcchhhhhhhhhheeeh
Confidence            11  123 221   11234556666666666677777776 4667666654 444455666667777777665544

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=96.20  E-value=0.062  Score=38.30  Aligned_cols=64  Identities=19%  Similarity=0.172  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHH
Q 021040           43 WFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSV  107 (318)
Q Consensus        43 ~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~  107 (318)
                      +.+.+|...+|.++|.++.|++-+.-.++..++.+...++.+|..+|+. +..+.+...+....+
T Consensus        11 yTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~-~~~~l~~~~~~~~~m   74 (85)
T PF06779_consen   11 YTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRL-LRAGLLLTVLSTAAM   74 (85)
T ss_pred             HHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHH-HHHHHHHHHHHHHHH
Confidence            4565666666679999999999999999999999999999988665555 567777766665544

Note that many members are hypothetical proteins.

>PF12832 MFS_1_like: MFS_1 like family

Probab=96.09  E-value=0.036  Score=38.83  Aligned_cols=60  Identities=17%  Similarity=0.273  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021040          255 VALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQVISLKLYS  315 (318)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~v~~~i~~~~~~~i~~~~~~  315 (318)
                      +-..+++...+......|+|.|+++ .|+++.+++.+..+..+.++++..+.+.+.||...
T Consensus         5 lk~~yf~~f~~~g~~~Pfl~~~~~~-~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~   64 (77)
T PF12832_consen    5 LKAFYFFYFAALGCLYPFLPLYLKQ-LGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGK   64 (77)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHhhhh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCc
Confidence            4456777788888899999999997 79999888888777777777777777777777654

>TIGR00805 oat sodium-independent organic anion transporter

Probab=95.86  E-value=0.038  Score=54.95  Aligned_cols=75  Identities=17%  Similarity=0.217  Sum_probs=54.4

Q ss_pred             hcccchHHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHH-HHHHHhhhhHHHhhhccCc-hHHHHHHHHHHHHH
Q 021040           29 YGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQI-ADGFATIFIGELIDRFGHF-KIWHGAGSVLVAVS  103 (318)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i-~~~i~~p~~G~lsDr~Grr-~~~l~~g~~~~~i~  103 (318)
                      ..++.+..........+++|.|+++. |+++.+++++.....+ ..+++.++.|+++||++++ |..+.++.+...++
T Consensus       335 ~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~  412 (633)
T TIGR00805       335 VILAQVIDSLAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLS  412 (633)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHH
Confidence            33444444555556778899999886 9999999999887776 5678999999999999833 33355555555554

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=95.68  E-value=1.5  Score=42.27  Aligned_cols=111  Identities=16%  Similarity=0.109  Sum_probs=67.5

Q ss_pred             HHHHHHHHHHHHHHHhhhhHHHhhhccCc-h------HHHHHHHHHHHHHHHHHhCCCCCCcccC---ccchhHHHHHHH
Q 021040           61 AAAVMLSGQIADGFATIFIGELIDRFGHF-K------IWHGAGSVLVAVSFSSVFGGCMPCRILS---TSTLKVETISYC  130 (318)
Q Consensus        61 ~g~i~~~~~i~~~i~~p~~G~lsDr~Grr-~------~~l~~g~~~~~i~~~~~~~~~~~~~~~~---~~~~~~~~~~~~  130 (318)
                      .++..++-++.-.+..|+.+++=.|.+|| |      . ..+|.++.++++..+..   +.....   ..+.+|.+..+ 
T Consensus       310 ~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~K-fa~g~~~~g~~f~~l~~---~~~~~~~~~~~s~~wl~~~~-  384 (493)
T PRK15462        310 TAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGK-FALGLGLMSAGFCILTL---SARWSAMYGHSSLPLMVLGL-  384 (493)
T ss_pred             HHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHH-HHHHHHHHHHHHHHHHH---HHhhcCCCCCcCHHHHHHHH-
Confidence            44666777777788889888886666332 1      2 35688888888765532   111111   12344544444 


Q ss_pred             HHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHH-HHHHHHHH
Q 021040          131 VFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFT-MVANLSLY  180 (318)
Q Consensus       131 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~-~~g~~~~~  180 (318)
                         .+..+|.-...+...++++++.| ++-|+..++...... .+|+.+++
T Consensus       385 ---~~~t~gEl~~sPvgls~~~~laP-~~~~g~~mg~w~l~~~~~~~~~~g  431 (493)
T PRK15462        385 ---AVMGFAELFIDPVAMSQITRIEI-PGVTGVLTGIYMLLSGAIANYLAG  431 (493)
T ss_pred             ---HHHHHHHHHHChHHHHHHHHhCh-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence               33556666666666788888875 578888888775432 45555443

>PRK03612 spermidine synthase; Provisional

Probab=95.58  E-value=1.8  Score=42.09  Aligned_cols=39  Identities=18%  Similarity=0.085  Sum_probs=31.3

Q ss_pred             HHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhh
Q 021040           47 LLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDR   85 (318)
Q Consensus        47 l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr   85 (318)
                      ..-.+..+ |-+..+.+.+++++..+.++++.+.|++.++
T Consensus        37 ~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~   76 (521)
T PRK03612         37 LGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRD   76 (521)
T ss_pred             HHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            34444544 8899999999999999999999998887743

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=95.38  E-value=1.5  Score=42.29  Aligned_cols=137  Identities=9%  Similarity=-0.101  Sum_probs=71.9

Q ss_pred             HHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhh
Q 021040           71 ADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSM  150 (318)
Q Consensus        71 ~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  150 (318)
                      .........+...||+|||.+ ...+.....++.+...+  .+    .....+...+...    +..++.+.........
T Consensus       362 ~~~p~~~~~~~~~~~~gR~~~-~~~~~~~~~~~~~~~~~--~~----~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~  430 (521)
T KOG0255|consen  362 VELPAYFRNGLLLPEFGRRPP-LFLSLFLAGIGLLLFGW--LP----DDLGGWLHWILPL----LGKFFIGSAFNLIFLY  430 (521)
T ss_pred             HHhhHHHHHHHHHHHhCcHHH-HHHHHHHHHHHHHHHHH--hh----ccchhHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence            555566666899999999888 55666666666554432  11    1111001111111    1112222222222445


Q ss_pred             ccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Q 021040          151 VNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLK  230 (318)
Q Consensus       151 ~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~  230 (318)
                      ..|+.|+ .-|..+.+.......+|.++++.+.. +.....        ....  ..+.+..+.+..++...++||+...
T Consensus       431 ~~el~pt-~~r~~~~~~~~~~~~~~~i~ap~~~~-~~~~~~--------~~~~--~~~~~~~~~l~~~~~~~~lpet~~~  498 (521)
T KOG0255|consen  431 SAELIPT-VVRNTAVGAISAAARLGSILAPLFPL-LLRQMF--------PLLG--LILFGWLALLLGLLSLLLLPETKGK  498 (521)
T ss_pred             HHhhccH-HHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhc--------ccch--HHHHHHHHHHHHHHHHhcCcccCCC
Confidence            5677764 46888888888887888776654421 111110        1111  1124556666666777888998543

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=95.35  E-value=0.7  Score=43.62  Aligned_cols=125  Identities=15%  Similarity=0.118  Sum_probs=85.6

Q ss_pred             HHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHH----HHHHHhCCCCCCcccCccc-
Q 021040           47 LLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAV----SFSSVFGGCMPCRILSTST-  121 (318)
Q Consensus        47 l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i----~~~~~~~~~~~~~~~~~~~-  121 (318)
                      ...|++..|+++.++|..-+.+.+....+.....++.+|+|..|. =.++...-..    +....|.   |     ..+ 
T Consensus       281 mt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~-G~~~l~~q~~~L~~~v~~~~~---~-----~~~~  351 (432)
T PF06963_consen  281 MTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRA-GLWSLWWQWVCLALCVVSFWA---P-----GSPF  351 (432)
T ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhh-HHHHHHHHHHHHHHHHHHHhc---C-----CCCc
Confidence            345666679999999999999999999999999999999998777 3455543322    2222232   2     111 


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHH
Q 021040          122 LKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYA  181 (318)
Q Consensus       122 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~  181 (318)
                      .......++...++..+|.-.++....-++.|..+ ++||+..++..+...++--++-..
T Consensus       352 ~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~-~~~Rg~v~gvq~sl~~lf~ll~~~  410 (432)
T PF06963_consen  352 SSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVP-ESERGAVSGVQNSLQSLFELLSFV  410 (432)
T ss_pred             hhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCC-HHHhhHHHHHHHHHHHHHHHHHHH
Confidence            11111222222245678888888888778888775 589999999998888877765443

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=95.10  E-value=0.2  Score=46.24  Aligned_cols=116  Identities=11%  Similarity=-0.072  Sum_probs=65.3

Q ss_pred             hHHHHHHHHHHHHHHHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCc--cchhHHHHH
Q 021040           90 KIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNS--TSRVVLTSC  167 (318)
Q Consensus        90 ~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~R~~~~~~  167 (318)
                      |. +.+|.++..++...+...+.|.....+.+....++..    .+..+|.+..-+...++.+|..+++  ++|.+...+
T Consensus         2 kt-I~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL----~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~   76 (372)
T PF00854_consen    2 KT-ILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGL----ALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNW   76 (372)
T ss_dssp             HH-HHHHHHHHHHHHHH--HHHTSSSC------CHHHHHH----HHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHH
T ss_pred             Hh-hhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHH----HHHHhccccccccHHHHHHHHhcccchhhhhhhHHH
Confidence            44 4567777777766532101221111111112222222    2466888888888889999987653  456788889


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHH
Q 021040          168 RNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIF  220 (318)
Q Consensus       168 ~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~  220 (318)
                      .+.+.|+|.+++..+.+. +.         ...+|.+.|.+.++..++..+..
T Consensus        77 fY~~in~G~~~~~~~~~~-i~---------~~~~~~~~f~i~~~~~~~~~~~f  119 (372)
T PF00854_consen   77 FYWGINIGSLFSPTLVPY-IQ---------QNYGWFLGFGIPAIGMLLALIVF  119 (372)
T ss_dssp             HHHHHHHHHHHHHHCCCH-HH---------HCS-HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhhHhhcccchh-hc---------cccchhhhhhHHHHHHHHHHHHH
Confidence            999999998876544322 21         12578777777665555444433

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=94.43  E-value=2.1  Score=42.17  Aligned_cols=112  Identities=14%  Similarity=0.133  Sum_probs=63.9

Q ss_pred             HHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHH
Q 021040           60 GAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVG  139 (318)
Q Consensus        60 ~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  139 (318)
                      ..++......+...++..+.|.+.-+.+|-|-.++++.+++.++.-.+..  .   -.++.+..   +.+.   ++.+++
T Consensus       350 ~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~--~---~~~n~~~~---i~~~---~l~g~g  418 (599)
T PF06609_consen  350 EIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAA--V---RPDNKNAA---IAFL---VLAGFG  418 (599)
T ss_pred             eeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHH--c---cCCCcchH---HHHH---HHHHHh
Confidence            56777777778888888999999988887776566776666554333321  1   01222222   2222   345566


Q ss_pred             HhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHH
Q 021040          140 WAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIA  183 (318)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~  183 (318)
                      .+....+......-..+ +++-+.+.++......+|+.++..+.
T Consensus       419 iG~~~~~~~~~~ql~~p-~~~ig~a~gL~~s~R~~GGsIg~aIy  461 (599)
T PF06609_consen  419 IGGILVPAIVIAQLIVP-DEDIGTATGLTGSIRSIGGSIGYAIY  461 (599)
T ss_pred             HHHHHHHHHHeeEeeeC-chHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            66655555444443344 35567776655555555555555443

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=94.22  E-value=2.3  Score=39.63  Aligned_cols=78  Identities=13%  Similarity=-0.000  Sum_probs=38.8

Q ss_pred             ccccccCCCCCCCCCchhhhhhcccchHHHHHHHHHHHHHHHHHHHh-CCCh--hHHHHHHHHHHHHHHHHhhhhHHHhh
Q 021040            8 NYDIENDDSFTQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSP--RGAAAVMLSGQIADGFATIFIGELID   84 (318)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-gls~--~~~g~i~~~~~i~~~i~~p~~G~lsD   84 (318)
                      +++.+++++.+++...-..+.+.+-.++.-..|+...+--+.|..+. +-+.  .........+.+...+....--.+.-
T Consensus         2 ~~~~~~~~~~p~d~~~~v~~i~~llGiG~LlpWN~fiTa~~y~~~~~~~~~~~~~F~~~~~~~a~i~~ll~~~~n~~~~~   81 (406)
T KOG1479|consen    2 QDEVELDSPEPEDGYNLVYLIFLLLGIGTLLPWNMFITASDYYYYRFPGYHNSKNFTSSYTLAAQIPLLLFNLLNAFLNT   81 (406)
T ss_pred             CccccccCCCcccccccHHHHHHHHhcccccchHhhhccHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455444444444433333333333444566777776656666665 4444  22333344444445555555555555


Q ss_pred             h
Q 021040           85 R   85 (318)
Q Consensus        85 r   85 (318)
                      |
T Consensus        82 ~   82 (406)
T KOG1479|consen   82 R   82 (406)
T ss_pred             H
Confidence            6

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=93.84  E-value=1.2  Score=43.78  Aligned_cols=159  Identities=13%  Similarity=0.072  Sum_probs=87.7

Q ss_pred             CCchhhhhhcccc-hHHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhh-hccCchHHHHHHH
Q 021040           21 VGRWSVLYYGSGH-MLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELID-RFGHFKIWHGAGS   97 (318)
Q Consensus        21 ~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsD-r~Grr~~~l~~g~   97 (318)
                      ...|+-..+.++. .....+...+...+..|+++. +.+...+.-......-.........+.++| -+||.+. +.++.
T Consensus        33 ~g~~~s~~~il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~t-I~~~s  111 (571)
T KOG1237|consen   33 TGGWLSAPFILGNEVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFT-INIGS  111 (571)
T ss_pred             echhHhHHHHHHHHHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHH-HHHHH
Confidence            3344445555554 333344444456678888875 777788888888888888888899999999 5889988 56676


Q ss_pred             HHHHHHHHHHhC----C-CCC--C----cc--cCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccC--ccch-
Q 021040           98 VLVAVSFSSVFG----G-CMP--C----RI--LSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLN--STSR-  161 (318)
Q Consensus        98 ~~~~i~~~~~~~----~-~~~--~----~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~R-  161 (318)
                      ++..++...+..    + ..|  |    .-  -...+.....+.+... .+..+|.+...+...+.-+|-.++  ++++ 
T Consensus       112 ~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l-~lia~G~gg~r~~~~~fGadQfd~~~~~~~~  190 (571)
T KOG1237|consen  112 LISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGAL-YLIALGAGGIRPCLLAFGADQFDELDPVEVK  190 (571)
T ss_pred             HHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHH-HHheeccCCCCCcchhhcccccCccCcchhh
Confidence            666655332211    0 011  0    00  0000111112222111 123345565566666677776642  2222 


Q ss_pred             --hHHHHHHHHHHHHHHHHHHH
Q 021040          162 --VVLTSCRNAFTMVANLSLYA  181 (318)
Q Consensus       162 --~~~~~~~~~~~~~g~~~~~~  181 (318)
                        .+...+.+...++|.+++..
T Consensus       191 ~~~~fFnW~yf~~~~g~l~a~t  212 (571)
T KOG1237|consen  191 GIPSFFNWFYFSQNGGALLAQT  212 (571)
T ss_pred             CcccchhHHHHHHHHHHHHHHH
Confidence              24456666667777665543

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=93.52  E-value=0.29  Score=45.88  Aligned_cols=49  Identities=16%  Similarity=0.065  Sum_probs=38.2

Q ss_pred             CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHH
Q 021040           55 GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVS  103 (318)
Q Consensus        55 gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~  103 (318)
                      |.+....|.+.....+...+++.+.|.+.||+.+.|.-+........++
T Consensus       297 gY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~  345 (480)
T KOG2563|consen  297 GYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVG  345 (480)
T ss_pred             cCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Confidence            7777888888888889999999999999999887766454444444444

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=92.57  E-value=1.3  Score=42.32  Aligned_cols=117  Identities=7%  Similarity=-0.033  Sum_probs=77.8

Q ss_pred             CCChhHHHHHHHHHHHHHHHHhhhhH-HHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccchhHHHHHHHHHH
Q 021040           55 GLSPRGAAAVMLSGQIADGFATIFIG-ELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFA  133 (318)
Q Consensus        55 gls~~~~g~i~~~~~i~~~i~~p~~G-~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (318)
                      |.++.+.+...+...+...+.+.+.. .+.-.+|-|+. +..|+....+......       +.++  .+..+....   
T Consensus       273 ~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~-i~lGl~~~~~~~~~~a-------f~~~--~w~~~~~~v---  339 (463)
T KOG2816|consen  273 GWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRL-ISLGLLSEFLQLLLFA-------FATE--TWMMFAAGV---  339 (463)
T ss_pred             CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH-hhHHHHHHHHHHHHHH-------Hhcc--chhhhHHHH---
Confidence            99999999999999999999998888 67777887774 6778777666654332       1222  122222221   


Q ss_pred             HHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021040          134 AIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVF  187 (318)
Q Consensus       134 ~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~  187 (318)
                        .........+...+..+.+. +++||+++.++......+...+++.+-+.+.
T Consensus       340 --~~~~~~~~~pa~~s~~s~~v-~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~  390 (463)
T KOG2816|consen  340 --VVALAGIVFPAIRAFASILV-SPEEQGKVFGIISGIEGLSGVVSPALYGNIF  390 (463)
T ss_pred             --HHHhhcchhHHHHhHHHhhc-ccccccchhhHHHHHHHHhhhhhHHHHHHHH
Confidence              22222333444556666655 4689999999998888888877766655554

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=91.61  E-value=2.3  Score=40.22  Aligned_cols=160  Identities=8%  Similarity=-0.005  Sum_probs=87.9

Q ss_pred             CChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhC--C--CCCCcccCccchhHHHHHHHH
Q 021040           56 LSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFG--G--CMPCRILSTSTLKVETISYCV  131 (318)
Q Consensus        56 ls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~  131 (318)
                      .++...|.+..++.++..++..+....--++.-|+.+ .+..+..++..+.-..  .  ....+. ++.  +.    .+.
T Consensus       252 fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~-~~t~~~~~~~~l~~~~lv~~~n~~~Gi-~d~--~f----~lg  323 (433)
T PF03092_consen  252 FSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIF-VVTTLVSVLASLFDLLLVTRWNLDLGI-PDQ--WF----ALG  323 (433)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH-HHHHHHHHHHhcccEEEEEEEeeeeCc-CCe--EE----EEE
Confidence            7888899888888888887777776655556556664 3444443333221100  0  000000 111  10    011


Q ss_pred             HHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchhHHHHHHHHHHHH
Q 021040          132 FAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIF  211 (318)
Q Consensus       132 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~  211 (318)
                      -.++..+.......|...+.+++-| +...+...++.....|+|..++..++..+...++-.  .+.-.+..+..++..+
T Consensus       324 d~~l~~~~~~i~~mP~lvl~a~lcP-~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt--~~~f~~l~~lili~~~  400 (433)
T PF03092_consen  324 DTILEEVIGMIAFMPSLVLAARLCP-KGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVT--RDDFSNLWLLILICSV  400 (433)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHCC-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--cccccchHHHHHHHHH
Confidence            1123444455556677777888876 456688888888889999988888877776655411  0112233444455555


Q ss_pred             HHHHHHHHHHhccccc
Q 021040          212 IGCCFVGIFLSRTEEP  227 (318)
Q Consensus       212 ~~~l~~~~~~~~~~e~  227 (318)
                      .. +..+....++|+.
T Consensus       401 ~~-ll~l~ll~lLp~~  415 (433)
T PF03092_consen  401 IQ-LLPLPLLFLLPPQ  415 (433)
T ss_pred             HH-HHHHHHHHHcCCC
Confidence            54 3444444455553

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=90.02  E-value=11  Score=36.12  Aligned_cols=194  Identities=11%  Similarity=-0.052  Sum_probs=91.8

Q ss_pred             chhhhhhcccchHHHHHHHHHH---HHHHHHHHHh-CCC----hhHHHHHHHHHHHHHHHHhhhhHHHhhhccCc--hHH
Q 021040           23 RWSVLYYGSGHMLNDITAACWF---TYLLLFLTDI-GLS----PRGAAAVMLSGQIADGFATIFIGELIDRFGHF--KIW   92 (318)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~---~~l~~~l~~~-gls----~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr--~~~   92 (318)
                      ++|.+.+..-.+...+.|....   +-+..|..+. +-+    .-..++..+.-+++-.+.+|+.-++--|.+||  ++-
T Consensus       280 r~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps  359 (498)
T COG3104         280 RRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPS  359 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhcccccceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCC
Confidence            3444444444444445555443   4566666652 111    12334556666777778888888888874433  211


Q ss_pred             ----HHHHHHHHHHHHHHHhCCCCCCcc-cCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHH
Q 021040           93 ----HGAGSVLVAVSFSSVFGGCMPCRI-LSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSC  167 (318)
Q Consensus        93 ----l~~g~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~  167 (318)
                          .-.|..+++.+++.+-......+- .+..+.++....|.+    ..+|.=+..+.-.+.+..+.| +.-.+.+++.
T Consensus       360 ~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l----~s~gEL~iSpvGLs~~t~laP-~~~~s~~ma~  434 (498)
T COG3104         360 TPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVL----QSFGELFISPVGLSMVTKLAP-PALKSFIMAM  434 (498)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHH----HHHHHHHhCHHHHHHHHHhCh-HHHHHHHHHH
Confidence                245666666665543210000011 122345665555543    344444444444556666554 3344555665


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhccc
Q 021040          168 RNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTE  225 (318)
Q Consensus       168 ~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~  225 (318)
                      .-.....|+.++..+...-..    .+.........+.|..++..+++...+.....|
T Consensus       435 wfLt~a~~~~l~g~va~~~~~----~~~~~~~~~~~~~F~~~g~v~i~~~~~~~~~~~  488 (498)
T COG3104         435 WFLTVAAGQTLGGQVAGLTAV----TDPAYTAFIEGRVFGTIGVVAIVIGILLLLLSP  488 (498)
T ss_pred             HHHHHHHHHHhhceecccccc----cchhhhhhhhhhhHHHHHHHHHHHHHHHHHhhH
Confidence            555555555444333210000    000011233445556666666655555444433

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=89.81  E-value=1.2  Score=38.75  Aligned_cols=98  Identities=11%  Similarity=0.112  Sum_probs=55.0

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhcccccc--cccccC--
Q 021040          159 TSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPR--LKMGLR--  234 (318)
Q Consensus       159 ~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~--~~~~~~--  234 (318)
                      ++|+..+....++-++|+++...   |++-..+.  ......+|++...+.+++.++-.++..++-+|-+  .+++++  
T Consensus         2 k~K~~~s~~n~~gf~iG~ii~~i---pF~~~~~~--~~~~~~~W~~I~si~~lL~~IpLIly~ifGk~fd~~~~~~k~~k   76 (267)
T PF07672_consen    2 KKKSILSQFNPWGFNIGTIIVNI---PFLISSSV--VIALTNNWQWILSIFILLIFIPLILYIIFGKNFDIYSPKEKQEK   76 (267)
T ss_pred             CccceeeeeccccchhhHHHHHh---hHHhcchH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCccccccc
Confidence            56677777777777888776543   22211000  0012457998887777766665555544433311  111111  


Q ss_pred             --CCCchHHHHHHHHhcHHHHHHHHHHHH
Q 021040          235 --GNSHARISWAYWFKKILYYQVALVYML  261 (318)
Q Consensus       235 --~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (318)
                        .+.+.+.++++.+|+|+-|..++.|-.
T Consensus        77 ~~~~~~~~~s~~~~LK~K~tw~w~~~Yg~  105 (267)
T PF07672_consen   77 ENSTLSKKPSYKSILKEKETWKWILIYGI  105 (267)
T ss_pred             ccccccccchHHHHHccchHHHHHHHHHH
Confidence              122345778999999998877655543

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=88.09  E-value=7.7  Score=36.01  Aligned_cols=122  Identities=14%  Similarity=0.084  Sum_probs=75.1

Q ss_pred             hCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhcc-CchHHHHHHHHHHHHHHHHHhCCCCCCcccCccchhHHHHHHHHH
Q 021040           54 IGLSPRGAAAVMLSGQIADGFATIFIGELIDRFG-HFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVF  132 (318)
Q Consensus        54 ~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~G-rr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (318)
                      +|.++.|.|-+++...+...+.|.......||.. .-+..+..+...+.-.+.++-       ....  ...+....   
T Consensus       292 fg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls-------~~~~--~~~l~~~s---  359 (451)
T KOG2615|consen  292 FGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLS-------LART--PVVLYLGS---  359 (451)
T ss_pred             cCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHh-------cccc--chhhhHHH---
Confidence            4899999999999999999999999999999865 223334444444433433221       1111  11111111   


Q ss_pred             HHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021040          133 AAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSV  189 (318)
Q Consensus       133 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~  189 (318)
                       .+..+..+...+....++....+ ++||+.++|+....+.++=++|+.+.+.+..|
T Consensus       360 -~l~sf~~A~~vt~Lt~Lv~~~~~-~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~W  414 (451)
T KOG2615|consen  360 -TLKSFSTASVVTCLTSLVHKYGP-QSQRGTLNGIFRSLGALARAIGPLVSGVIFSW  414 (451)
T ss_pred             -HHHHHHHHHhhHHHHHHHHhcCC-cccchHHHHHHHHHHHHHHHhhhhhhheeEEE
Confidence             23334444444455556655554 58999999998888888877776665444443

>PTZ00207 hypothetical protein; Provisional

Probab=84.57  E-value=13  Score=36.74  Aligned_cols=160  Identities=8%  Similarity=-0.041  Sum_probs=84.3

Q ss_pred             HHHHHHHh-CC-ChhHHHH-HHHHHHHHHHHHhhhhHHHhh---hcc-----CchHHHHHHHHHHHHHHHHHhCCCCCCc
Q 021040           47 LLLFLTDI-GL-SPRGAAA-VMLSGQIADGFATIFIGELID---RFG-----HFKIWHGAGSVLVAVSFSSVFGGCMPCR  115 (318)
Q Consensus        47 l~~~l~~~-gl-s~~~~g~-i~~~~~i~~~i~~p~~G~lsD---r~G-----rr~~~l~~g~~~~~i~~~~~~~~~~~~~  115 (318)
                      +....+.+ |. +..+... ..++.+++++++....|+++.   |.+     .|..++.+..+ +.++...++. .+|  
T Consensus       376 ~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~-~~~~~lll~~-~~p--  451 (591)
T PTZ00207        376 ARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSV-CIITMLTLFL-TLP--  451 (591)
T ss_pred             HHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHH-HHHHHHHHHH-HCC--
Confidence            34444455 55 3332233 678889999999999999883   111     12233444444 4454444432 122  


Q ss_pred             ccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHH-HHHHHHHHhhccCc
Q 021040          116 ILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLY-AIAFIVFSVSTAKT  194 (318)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~-~~~~~l~~~~~~~~  194 (318)
                         .   ..+.+.++    +.+++++.......+...|++.  |+-++...+....+.+|..+-. .+.+.+.+.=...+
T Consensus       452 ---~---~~L~~~~~----lvg~~~G~~~~~~~~i~selFg--k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~  519 (591)
T PTZ00207        452 ---K---AALPLPYF----IAAFANGFMAATIALVTRTIFA--KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKL  519 (591)
T ss_pred             ---c---cHhHHHHH----HHHHHhhHhHHHHHHHHHHHhc--cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence               1   11233443    4556666655555667788874  5677777777666677765532 12223332111100


Q ss_pred             ccc---hhHHHHHHHHHHHHHHHHHHHHHHh
Q 021040          195 HAD---LENQYRWIAYSSIFIGCCFVGIFLS  222 (318)
Q Consensus       195 ~~~---~~~~~~~~~~i~~~~~~l~~~~~~~  222 (318)
                      ...   ...=++..+++.++++++..+....
T Consensus       520 ~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~  550 (591)
T PTZ00207        520 GQDVCTERVCVVMPLAFLLGLSFLAFITSTY  550 (591)
T ss_pred             CCCeeCCceeeHhHHHHHHHHHHHHHHHHhh
Confidence            000   1123777777777776666655543

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=80.23  E-value=56  Score=31.23  Aligned_cols=113  Identities=12%  Similarity=0.084  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHHHHHHHhhhhHHHhh---hccCchHHHHHHHHHHHHHHHHHhCCCCCCc--ccCccch----hHHHHHHH
Q 021040           60 GAAAVMLSGQIADGFATIFIGELID---RFGHFKIWHGAGSVLVAVSFSSVFGGCMPCR--ILSTSTL----KVETISYC  130 (318)
Q Consensus        60 ~~g~i~~~~~i~~~i~~p~~G~lsD---r~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~--~~~~~~~----~~~~~~~~  130 (318)
                      ..++-.....++..++....+.+++   |+||+.. +.++.++..+...+... ..|.-  +.++...    ........
T Consensus       280 ~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~-~~~~~~~~~~~~~li~l-~~p~dap~~~t~~~~~~~~~~~~~~~  357 (461)
T KOG3098|consen  280 LIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPT-VLIGIIIHLIGFLLIHL-SFPNDAPLRPTDSPPLLFTPSYYLAL  357 (461)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcc-hhHHHHHHHHHHHHHhc-cccccCCCCCCcccccccccchhHHH
Confidence            3444455556666667777888887   4888877 56666666666554433 22210  0011000    00111223


Q ss_pred             HHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHH
Q 021040          131 VFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVAN  176 (318)
Q Consensus       131 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~  176 (318)
                      +...+.|++-+..+......+++..+  ++|..+.++.-.-..++.
T Consensus       358 ii~~l~G~~D~~~~t~~~~ii~~~~~--~~~~~~fsi~kfyq~~~s  401 (461)
T KOG3098|consen  358 IIGFLLGFGDACFNTQRYVIIALLYP--DDRAQAFSLFKFYQSVAS  401 (461)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHH
Confidence            33456777777777777777777663  456655554433333343

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	318
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.93
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.9
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.9
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.81
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.74
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.6
2xut_A	524	Proton/peptide symporter family protein; transport	99.53
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.3
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.11
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.07
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.04
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	98.88
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	98.27
2xut_A	524	Proton/peptide symporter family protein; transport	98.12

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.93  E-value=3.2e-23  Score=192.81  Aligned_cols=280  Identities=11%  Similarity=-0.032  Sum_probs=194.6

Q ss_pred             CchhhhhhcccchHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHH
Q 021040           22 GRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVA  101 (318)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~  101 (318)
                      +++..+...+..+..........+.++.+.++.|++..++|++.++..+...+++|+.|.++||+||||. +..+.++.+
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~-l~~~~~~~~  102 (438)
T 3o7q_A           24 YIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAG-IITGLFLYA  102 (438)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHH-HHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHH-HHHHHHHHH
Confidence            3444455555556666666667777777666779999999999999999999999999999999999998 567888777


Q ss_pred             HHHHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHH
Q 021040          102 VSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYA  181 (318)
Q Consensus       102 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~  181 (318)
                      ++....+.  .  ...+  +.+...    +.+++.+++.+...++..+++.|..+ +++|+++.++.+.+..+|.++++.
T Consensus       103 ~~~~~~~~--~--~~~~--~~~~l~----~~~~l~G~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~  171 (438)
T 3o7q_A          103 LGAALFWP--A--AEIM--NYTLFL----VGLFIIAAGLGCLETAANPFVTVLGP-ESSGHFRLNLAQTFNSFGAIIAVV  171 (438)
T ss_dssp             HHHHHHHH--H--HHTT--CHHHHH----HHHHHHHHHHHHHHHHHHHHHHHSSC-STTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHh--c--cccc--cHHHHH----HHHHHHHhhHHHhhhhHHHHHHHHcC-chhHHHHHHHHHHHHHHHHHHHHH
Confidence            77654421  0  0111  223222    22356778888888888899999886 578999999999999999998887


Q ss_pred             HHHHHHHhhccCcc----------------cchhHHHHHHHHHHHHHHHHHHHHHHh-ccccccccc-ccCCCCchHHHH
Q 021040          182 IAFIVFSVSTAKTH----------------ADLENQYRWIAYSSIFIGCCFVGIFLS-RTEEPRLKM-GLRGNSHARISW  243 (318)
Q Consensus       182 ~~~~l~~~~~~~~~----------------~~~~~~~~~~~~i~~~~~~l~~~~~~~-~~~e~~~~~-~~~~~~~~~~~~  243 (318)
                      +++.+.........                .+...+|+|.+++.+++..+..++..+ ..||+++++ +++++.+.++.+
T Consensus       172 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  251 (438)
T 3o7q_A          172 FGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDAKQGSFSASL  251 (438)
T ss_dssp             HTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCCSSTTSHHHHH
T ss_pred             HHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccccccchhhhH
Confidence            76665522110000                000123888887766665555544433 234443322 222344566788


Q ss_pred             HHHHhcHHHHHHHHHHHHHHHHHHHHHHHhHHh-hhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 021040          244 AYWFKKILYYQVALVYMLTRLVVNVSQAYLAFY-VINDLRMGQSAKALVPAIIYICSFIVSILLQVISLKL  313 (318)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y-l~~~~g~~~~~~~~~~~~~~v~~~i~~~~~~~i~~~~  313 (318)
                      ++++|+|+++...+..++..........++|.| +++.+|.+....+....+..++.+++.++.+++.||+
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~  322 (438)
T 3o7q_A          252 SRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF  322 (438)
T ss_dssp             HHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999988888888888889999999 8888899887666555555555666666666666554

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.90  E-value=2.5e-23  Score=194.06  Aligned_cols=265  Identities=12%  Similarity=0.021  Sum_probs=193.5

Q ss_pred             hhhcccchHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHH
Q 021040           27 LYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSS  106 (318)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~  106 (318)
                      ....++.+..........++++.+.++. .+..+.|++.++..+...+++|+.|+++||+||||. +.++.++.+++...
T Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~-l~~~~~~~~~~~~~  108 (451)
T 1pw4_A           31 LGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVF-LPAGLILAAAVMLF  108 (451)
T ss_dssp             HHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHH-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHH-HHHHHHHHHHHHHH
Confidence            3444445555555555667777777888 999999999999999999999999999999999987 56788877777654


Q ss_pred             HhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 021040          107 VFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIV  186 (318)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l  186 (318)
                      ...  .+.. .+  +.+...+.    +++.+++.+...++..+++.|..+ +++|+++.++.+.+..+|.++++.+++.+
T Consensus       109 ~~~--~~~~-~~--~~~~l~~~----~~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~~~~~l  178 (451)
T 1pw4_A          109 MGF--VPWA-TS--SIAVMFVL----LFLCGWFQGMGWPPCGRTMVHWWS-QKERGGIVSVWNCAHNVGGGIPPLLFLLG  178 (451)
T ss_dssp             HHH--CHHH-HS--SSSHHHHH----HHHHHHHHHHTHHHHHHHHHTTCT-TTHHHHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred             HHh--hhhc-cc--cHHHHHHH----HHHHHHHhhhccchHHHHHHHHCC-chhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            421  1100 11  22222222    345778888888888899999986 57899999999999999988887776655


Q ss_pred             HHhhccCcccchhHH-HHHHHHHHHHHHHHHHHHHHhcccccccccc----cC--C------------CCchHH-HHHHH
Q 021040          187 FSVSTAKTHADLENQ-YRWIAYSSIFIGCCFVGIFLSRTEEPRLKMG----LR--G------------NSHARI-SWAYW  246 (318)
Q Consensus       187 ~~~~~~~~~~~~~~~-~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~----~~--~------------~~~~~~-~~~~~  246 (318)
                      ...          .+ |++.+++.++++++..++..+..||++++.+    ++  +            +.+.++ ..+++
T Consensus       179 ~~~----------~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (451)
T 1pw4_A          179 MAW----------FNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYV  248 (451)
T ss_dssp             HHH----------TCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHT
T ss_pred             HHH----------hccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcccccccchhhhhcccccccchHHHH
Confidence            532          34 8888888887777777776677787643311    00  0            011111 15778


Q ss_pred             HhcHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 021040          247 FKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQVISLKL  313 (318)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~v~~~i~~~~~~~i~~~~  313 (318)
                      +|+|.++...+..++..........++|.|+++.+|.+....+.+..+..++++++.++.+++.||+
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~  315 (451)
T 1pw4_A          249 LPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV  315 (451)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8999999999999999988889999999999999999887776666666677777777777777775

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.90  E-value=8.4e-23  Score=186.51  Aligned_cols=257  Identities=12%  Similarity=0.039  Sum_probs=190.1

Q ss_pred             cccchHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhC
Q 021040           30 GSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFG  109 (318)
Q Consensus        30 ~~~~~~~~~~~~~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~  109 (318)
                      .++.+..........+.++.+.++.|.|+.+.|++.++..+...+++|+.|+++||+||||.+ ..+.+..+++......
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~-~~~~~~~~~~~~~~~~   84 (375)
T 2gfp_A            6 VLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVI-LVGMSIFMLATLVAVT   84 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCC-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhH-HHHHHHHHHHHHHHHH
Confidence            344455556666777777777777799999999999999999999999999999999999984 5677777776554421


Q ss_pred             CCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021040          110 GCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSV  189 (318)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~  189 (318)
                             .+  +.+..    .+.+++.+++.+...+...+++.|..+ +++|++..+..+....+|..+++.+++.+.+ 
T Consensus        85 -------~~--~~~~l----~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~-  149 (375)
T 2gfp_A           85 -------TS--SLTVL----IAASAMQGMGTGVGGVMARTLPRDLYE-RTQLRHANSLLNMGILVSPLLAPLIGGLLDT-  149 (375)
T ss_dssp             -------HH--HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH-TSSCCSHHHHHHHHHHHHHHHHHHHHHHSSC-
T ss_pred             -------hc--cHHHH----HHHHHHHHHHHHhhhhhHHHHHHHHCC-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-
Confidence                   11  12222    223345777888778788889999876 4789999999988888888776555433321 


Q ss_pred             hccCcccchhHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHH
Q 021040          190 STAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVS  269 (318)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (318)
                               ..+|++.+++.+++..+..+...+..||++++++  ++++.++++++++|||+++...+..++........
T Consensus       150 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (375)
T 2gfp_A          150 ---------MWNWRACYLFLLVLCAGVTFSMARWMPETRPVDA--PRTRLLTSYKTLFGNSGFNCYLLMLIGGLAGIAAF  218 (375)
T ss_dssp             ---------HHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTTC--CCCCTTTCSTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---------hccHHHHHHHHHHHHHHHHHHHHHHCcccCCCCc--ccccHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH
Confidence                     3578988888777776666555566777654332  22233455678899999999998888888888899


Q ss_pred             HHHhHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 021040          270 QAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQVISLKL  313 (318)
Q Consensus       270 ~~~~~~yl~~~~g~~~~~~~~~~~~~~v~~~i~~~~~~~i~~~~  313 (318)
                      ..++|.|+++..|.++...+.+.....++.+++..+.+++.||.
T Consensus       219 ~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~  262 (375)
T 2gfp_A          219 EACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF  262 (375)
T ss_dssp             HHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999998898877666666666677777777777777764

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.81  E-value=1.5e-17  Score=156.91  Aligned_cols=173  Identities=12%  Similarity=-0.079  Sum_probs=125.7

Q ss_pred             hhhhhcccchHHHHHHHHHHHHHHHHHHH------hCCChhHHHHHHHHHHHHHHHHhhhhHHHhhh-ccCchHHHHHHH
Q 021040           25 SVLYYGSGHMLNDITAACWFTYLLLFLTD------IGLSPRGAAAVMLSGQIADGFATIFIGELIDR-FGHFKIWHGAGS   97 (318)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~------~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr-~Grr~~~l~~g~   97 (318)
                      ..+...+..+..........+++++|+++      .|++..+.|++.++..+...+++++.|+++|| +||||. +..+.
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~-~~~~~   92 (491)
T 4aps_A           14 GLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPA-VFWGG   92 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHH-HHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHH-HHHHH
Confidence            34444455566666677777888888876      69999999999999999999999999999999 899998 56788


Q ss_pred             HHHHHHHHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccc--hhHHHHHHHHHHHHH
Q 021040           98 VLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTS--RVVLTSCRNAFTMVA  175 (318)
Q Consensus        98 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--R~~~~~~~~~~~~~g  175 (318)
                      ++.+++......       .++  .....+.    .++.+++.+...+...+++.|..++ ++  |+...+..+...++|
T Consensus        93 ~~~~~~~~~~~~-------~~~--~~~~~~~----~~l~g~~~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~g  158 (491)
T 4aps_A           93 VLIMLGHIVLAL-------PFG--ASALFGS----IILIIIGTGFLKPNVSTLVGTLYDE-HDRRRDAGFSIFVFGINLG  158 (491)
T ss_dssp             HHHHHHHHHHHS-------CCS--TTHHHHH----HHHHHHHHHHHHHHHHHHHHHHSSS-CTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-------hhh--HHHHHHH----HHHHHHHHHhccchHHHHHHHHcCc-ccccceeeehHHHHHHHHH
Confidence            877777665432       222  2222222    2456778887777888899998864 55  677778788888888


Q ss_pred             HHHHHHHHHHHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHh
Q 021040          176 NLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLS  222 (318)
Q Consensus       176 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~  222 (318)
                      ..+++.+++.+..          ..+|++.+++.++..++..++..+
T Consensus       159 ~~~~~~~~~~l~~----------~~g~~~~f~~~~~~~~~~~~~~~~  195 (491)
T 4aps_A          159 AFIAPLIVGAAQE----------AAGYHVAFSLAAIGMFIGLLVYYF  195 (491)
T ss_dssp             HHHHHHHHHHHHH----------HSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh----------hhhHHHHHHHHHHHHHHHHHHHHH
Confidence            8887776655543          246899888776655555444433

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.74  E-value=2.7e-18  Score=159.38  Aligned_cols=270  Identities=12%  Similarity=0.061  Sum_probs=139.9

Q ss_pred             chhhhhhcccchHHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHH
Q 021040           23 RWSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVA  101 (318)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~  101 (318)
                      .++.+......+..........++++.|+++. |+|+.++|++.++..+...+++|++|+++||+||||++ .++....+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l-~~~~~~~~   84 (417)
T 2cfq_A            6 NTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYL-LWIITGML   84 (417)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHH-HHHHHHTT
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH-HHHHHHHH
Confidence            33444444444444455566678999999885 99999999999999999999999999999999999985 44554433


Q ss_pred             HHHHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHH
Q 021040          102 VSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYA  181 (318)
Q Consensus       102 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~  181 (318)
                      ++....+.    +.+.+.. .........+.....+.+++.......++.++.   +++|+...+..+....+|..+++.
T Consensus        85 ~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~---~~~~~~~~g~~~~~~~~g~~~~~~  156 (417)
T 2cfq_A           85 VMFAPFFI----FIFGPLL-QYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKV---SRRSNFEFGRARMFGCVGWALGAS  156 (417)
T ss_dssp             SCHHHHHH----HTHHHHH-HTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHH---HHHHTCCHHHHSSSTTTHHHHHHH
T ss_pred             HHHHHHHH----HHHHHHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh---hhhcccchHHHHHHHHHHHHHHHH
Confidence            21110100    0000000 000000111000011122222222222222221   123444445444455566665555


Q ss_pred             HHHHHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhccccccccc--cc----CCCCchHHHHHHHHhcHHHHHH
Q 021040          182 IAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKM--GL----RGNSHARISWAYWFKKILYYQV  255 (318)
Q Consensus       182 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~--~~----~~~~~~~~~~~~~~~~~~~~~~  255 (318)
                      +++.+..           .+|++.+++.++.+++..+...+..||+++++  ++    ++++...+++++++|+|+++..
T Consensus       157 l~~~l~~-----------~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (417)
T 2cfq_A          157 IVGIMFT-----------INNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALELFRQPKLWFL  225 (417)
T ss_dssp             HHHHHHH-----------HCSHHHHTTTTTTTTTHHHHSCSSCCCCSCSSCSSSSSSSCCCCCCHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHH-----------hchhHHHHHHHHHHHHHHHHHHHcCcccccccccccccccccccccHHHHHHHhcCCchhhH
Confidence            5444332           35777776655544433333333334432111  11    1111233567788999998877


Q ss_pred             HHHHHHHHHHHHHHHHHhHHhhhhccccc---cchhhHHHHHHH----HHHHHHHHHHHHHHHh
Q 021040          256 ALVYMLTRLVVNVSQAYLAFYVINDLRMG---QSAKALVPAIIY----ICSFIVSILLQVISLK  312 (318)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~yl~~~~g~~---~~~~~~~~~~~~----v~~~i~~~~~~~i~~~  312 (318)
                      .+..+.....+.....++|.|+.+.++..   ....+....+..    ++.++++.+.||+++|
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~  289 (417)
T 2cfq_A          226 SLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGK  289 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHH
Confidence            76655555555566667888887765532   222233322322    3445555555555444

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.60  E-value=7.2e-14  Score=131.58  Aligned_cols=161  Identities=13%  Similarity=0.078  Sum_probs=105.2

Q ss_pred             ChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCccc-----------CccchhHH
Q 021040           57 SPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRIL-----------STSTLKVE  125 (318)
Q Consensus        57 s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~-----------~~~~~~~~  125 (318)
                      +.++.|++.+.+.++.+++++++|+++||+|||+. +.++.+++.++.+...+  .+.+..           -..+... 
T Consensus        53 ~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~-l~~~~~l~~i~~i~~a~--~~~~~~~~~~~~~~~~~~a~~~~~-  128 (491)
T 4gc0_A           53 ANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDS-LKIAAVLFFISGVGSAW--PELGFTSINPDNTVPVYLAGYVPE-  128 (491)
T ss_dssp             HHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHH-HHHHHHHHHHHHHHHHC--TTTTTSCSSSSSSCCGGGGGCHHH-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHHHHHH--HhhhhhhhcchhHHHHHHhhhHHH-
Confidence            35678899999999999999999999999999998 56777777777654431  110000           0011222 


Q ss_pred             HHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchhHHHHHH
Q 021040          126 TISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWI  205 (318)
Q Consensus       126 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  205 (318)
                         +.+.+++.|++.+...+....++.|..| +++|++..+..+.+...|.+++..++..........  ......|++.
T Consensus       129 ---l~~~R~l~G~g~G~~~~~~~~~i~E~~p-~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  202 (491)
T 4gc0_A          129 ---FVIYRIIGGIGVGLASMLSPMYIAELAP-AHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDAS--WLNTDGWRYM  202 (491)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHHHHHHTTSC-GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTT--TTTTTHHHHH
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHHhhCC-HHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccc--cccchhhHHH
Confidence               2334456788888887778889999986 589999999988888888877666544333221100  0012456666


Q ss_pred             HHHHHHHHHHHHHHHHhcccccc
Q 021040          206 AYSSIFIGCCFVGIFLSRTEEPR  228 (318)
Q Consensus       206 ~~i~~~~~~l~~~~~~~~~~e~~  228 (318)
                      +.+.++..++ .++..++.||++
T Consensus       203 ~~~~~~~~~~-~~~~~~~~peSp  224 (491)
T 4gc0_A          203 FASECIPALL-FLMLLYTVPESP  224 (491)
T ss_dssp             HHTTHHHHHH-HHHHGGGSCCCH
T ss_pred             hhhhhhhhhh-hhhhhhcCCCCh
Confidence            5554444443 344556788875

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.53  E-value=3.4e-13  Score=128.18  Aligned_cols=171  Identities=12%  Similarity=-0.042  Sum_probs=120.8

Q ss_pred             hhhcccchHHHHHHHHHHHHHHHHHHHh-C------CChhHHHHHHHHHHHHHHHHhhhhHHHhhhc-cCchHHHHHHHH
Q 021040           27 LYYGSGHMLNDITAACWFTYLLLFLTDI-G------LSPRGAAAVMLSGQIADGFATIFIGELIDRF-GHFKIWHGAGSV   98 (318)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g------ls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~-Grr~~~l~~g~~   98 (318)
                      +...+..+..........+++++|+++. |      ++..+.|++.++..+...+++++.|+++||+ ||||. +..+.+
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~-~~~~~~   93 (524)
T 2xut_A           15 PYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNT-ILWLSL   93 (524)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHH-HHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH-HHHHHH
Confidence            3344455566666677778899999875 8      9999999999999999999999999999999 99998 566777


Q ss_pred             HHHHHHHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHH---HHHHHHHH
Q 021040           99 LVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSC---RNAFTMVA  175 (318)
Q Consensus        99 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~---~~~~~~~g  175 (318)
                      +.+++......       .+ .+.+..++    ..++.+++.+...+...+++.|..+ +++|++..+.   .+...++|
T Consensus        94 ~~~~~~~~~~~-------~~-~~~~~~~~----~~~l~g~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~~~~g  160 (524)
T 2xut_A           94 IYCVGHAFLAI-------FE-HSVQGFYT----GLFLIALGSGGIKPLVSSFMGDQFD-QSNKSLAQKAFDMFYFTINFG  160 (524)
T ss_dssp             HHHHHHHHHHH-------TS-SCHHHHHH----HHHHHHHHHHTTHHHHHHHHHHTCS-TTTTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH-------hc-ccHHHHHH----HHHHHHHhccccchhHHHHHHHHcC-ccchHHHHHHHHHHHHHHHHH
Confidence            77776654431       11 02222222    2345778888888888899999886 4677655544   77777778


Q ss_pred             HHHHHHHHHHHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHH
Q 021040          176 NLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFL  221 (318)
Q Consensus       176 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~  221 (318)
                      ..+++.+++.+..          ..+|++.+++.+++.++..++..
T Consensus       161 ~~~g~~~~~~l~~----------~~g~~~~f~~~~~~~~~~~~~~~  196 (524)
T 2xut_A          161 SFFASLSMPLLLK----------NFGAAVAFGIPGVLMFVATVFFW  196 (524)
T ss_dssp             HHHHHHTSTHHHH----------TSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhc----------cccHHHHHHHHHHHHHHHHHHHH
Confidence            7776655544432          24688888877766655544443

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.30  E-value=8.6e-11  Score=108.94  Aligned_cols=175  Identities=8%  Similarity=-0.015  Sum_probs=118.6

Q ss_pred             hhhhhcccchHHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhc--cCchHHHHHHHHHHH
Q 021040           25 SVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRF--GHFKIWHGAGSVLVA  101 (318)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~--Grr~~~l~~g~~~~~  101 (318)
                      +.+...+..+...........+++.|+++. |.+..+.|++.++..+...++.++.|+++||+  |||+.. ..+..+..
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~-~~~~~~~~  331 (451)
T 1pw4_A          253 LLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGAT-GVFFMTLV  331 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHH-HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhH-HHHHHHHH
Confidence            334444555555566666778899999985 99999999999999999999999999999999  998874 44544444


Q ss_pred             -HHHHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHH-HHHHH
Q 021040          102 -VSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMV-ANLSL  179 (318)
Q Consensus       102 -i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~-g~~~~  179 (318)
                       ++...+..       .++.+.....    +..++.+++.+.......++..|..+ +++|+++.++.+....+ |..++
T Consensus       332 ~~~~~~~~~-------~~~~~~~~~~----~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~g~~~~  399 (451)
T 1pw4_A          332 TIATIVYWM-------NPAGNPTVDM----ICMIVIGFLIYGPVMLIGLHALELAP-KKAAGTAAGFTGLFGYLGGSVAA  399 (451)
T ss_dssp             HHHHHHTTS-------CCTTCHHHHH----HHHHHHHHHHTHHHHHHHHHHHHTSC-TTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH-------hcccCHHHHH----HHHHHHHHHHhchHHHHHHHHHHHhc-hhhhhhHHHHHHHHHHHHHHHHH
Confidence             45443321       1111222111    11234556666666666678888875 47899999999998888 88887


Q ss_pred             HHHHHHHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHh
Q 021040          180 YAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLS  222 (318)
Q Consensus       180 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~  222 (318)
                      +.+.+.+.+.          .+|++.+++.+++.++..++..+
T Consensus       400 ~~~~g~l~~~----------~g~~~~~~~~~~~~~~~~~~~~~  432 (451)
T 1pw4_A          400 SAIVGYTVDF----------FGWDGGFMVMIGGSILAVILLIV  432 (451)
T ss_dssp             HHHHHHHHHS----------SCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHh----------cCcHHHHHHHHHHHHHHHHHHHH
Confidence            7776665542          24666666666665555544433

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.11  E-value=2e-09  Score=99.45  Aligned_cols=163  Identities=11%  Similarity=0.039  Sum_probs=101.7

Q ss_pred             HHHHHHHHHHHHh-C---CChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCccc
Q 021040           42 CWFTYLLLFLTDI-G---LSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRIL  117 (318)
Q Consensus        42 ~~~~~l~~~l~~~-g---ls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~  117 (318)
                      .....++.|+.+. +   .+..+.|....+..+...++.++.|+++||+||||. +..+.+..++++....       +.
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~-l~~~~~~~~~~~~~~~-------~~  309 (417)
T 2cfq_A          238 VFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNA-LLLAGTIMSVRIIGSS-------FA  309 (417)
T ss_dssp             HHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH-HHHHHHHHHHHHHHHT-------TC
T ss_pred             HHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHH-HHHHHHHHHHHHHHHH-------Hh
Confidence            3334567777764 3   235567888888888889999999999999999987 4566666666544332       11


Q ss_pred             CccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHH-HHHHHHHHHHHHHHHHHHHHhhccCccc
Q 021040          118 STSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCR-NAFTMVANLSLYAIAFIVFSVSTAKTHA  196 (318)
Q Consensus       118 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~-~~~~~~g~~~~~~~~~~l~~~~~~~~~~  196 (318)
                      +  +.....+.    ..+.+++.+....+...+.+|..| ++.|++..+.. +....+|+.+++.+++.+.+.       
T Consensus       310 ~--~~~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~p-~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~-------  375 (417)
T 2cfq_A          310 T--SALEVVIL----KTLHMFEVPFLLVGCFKYITSQFE-VRFSATIYLVCFCFFKQLAMIFMSVLAGNMYES-------  375 (417)
T ss_dssp             C--SHHHHHHH----TTHHHHHHHHHHHHHHHHHHHHSC-HHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHH-------
T ss_pred             c--cHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHh-------
Confidence            1  12211111    122344444444445667788775 57788877773 666667777776666554432       


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHhccccccc
Q 021040          197 DLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRL  229 (318)
Q Consensus       197 ~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~  229 (318)
                         .+++..+.+.++++++..++.+...||+++
T Consensus       376 ---~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~  405 (417)
T 2cfq_A          376 ---IGFQGAYLVLGLVALGFTLISVFTLSGPGP  405 (417)
T ss_dssp             ---SHHHHHHHHHHHHHHHHHHHHTTSSCCSCT
T ss_pred             ---cCcHHHHHHHHHHHHHHHHHHHhhhcCCCc
Confidence               356667777777767666666666676543

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.07  E-value=6.5e-09  Score=95.89  Aligned_cols=143  Identities=12%  Similarity=0.005  Sum_probs=95.6

Q ss_pred             hhcccchHHHHHHHHHHHHHHHH-HHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHH
Q 021040           28 YYGSGHMLNDITAACWFTYLLLF-LTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFS  105 (318)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~l~~~-l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~  105 (318)
                      ...+..+...........+++.| +++. |.+..+.+...++..+...++.++.|+++||+||||. +..+.+..+++..
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~-~~~~~~~~~~~~~  340 (438)
T 3o7q_A          262 WAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKV-LAAYALIAMALCL  340 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHH-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH-HHHHHHHHHHHHH
Confidence            33344444455555666888999 8887 9999999999999999999999999999999999988 4566666666654


Q ss_pred             HHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 021040          106 SVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFI  185 (318)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~  185 (318)
                      ....       .++  .. .....    .+.+++.+...+...++..|..++  +|+...++.. ...+|..+++.+.+.
T Consensus       341 ~~~~-------~~~--~~-~~~~~----~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~g~~~~~~~~g~  403 (438)
T 3o7q_A          341 ISAF-------AGG--HV-GLIAL----TLCSAFMSIQYPTIFSLGIKNLGQ--DTKYGSSFIV-MTIIGGGIVTPVMGF  403 (438)
T ss_dssp             HHHH-------CCH--HH-HHHHH----HHHHHHHTTHHHHHHHHHHSSCGG--GHHHHHHHHH-HTTHHHHHHHHHHHH
T ss_pred             HHHH-------cCC--cH-HHHHH----HHHHHHHHHHHHHHHHHHHhhccc--cccchhhHHH-HHHHHHHHHHHHHHH
Confidence            4331       111  11 11111    345566666666667776676653  3666666655 455676666665555


Q ss_pred             HHH
Q 021040          186 VFS  188 (318)
Q Consensus       186 l~~  188 (318)
                      +.+
T Consensus       404 l~~  406 (438)
T 3o7q_A          404 VSD  406 (438)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            544

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.04  E-value=4e-09  Score=98.97  Aligned_cols=171  Identities=13%  Similarity=0.020  Sum_probs=104.0

Q ss_pred             HHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccchhH
Q 021040           45 TYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKV  124 (318)
Q Consensus        45 ~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~  124 (318)
                      .|.+.+.++.+.+............+...++.++.+.+.||+|||+. +..+.....++...+..  .   .........
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~-~~~~~~~~~~~~~~l~~--~---~~~~~~~~~  371 (491)
T 4gc0_A          298 YYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPL-QIIGALGMAIGMFSLGT--A---FYTQAPGIV  371 (491)
T ss_dssp             HHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHH-HHHHHHHHHHHHHHHHH--H---HHTTCCHHH
T ss_pred             hcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcch-hccchHHHHHHHHHHHH--H---HhcccchHH
Confidence            34444444558888887777778888899999999999999999988 45566665555443311  0   001111111


Q ss_pred             HHHHHHHHHHHHHHHHhhh-HHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchhHHHH
Q 021040          125 ETISYCVFAAIFNVGWAAT-QVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYR  203 (318)
Q Consensus       125 ~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~  203 (318)
                      .....    .++..+++.. .+....+.+|+.| .+.|+++.++.+..+.+++.+++.+.+.+......    ....++.
T Consensus       372 ~~~~~----~~~~~~~~~~~~~~~~~~~~E~fP-t~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~----~~~~~~~  442 (491)
T 4gc0_A          372 ALLSM----LFYVAAFAMSWGPVCWVLLSEIFP-NAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWL----VAHFHNG  442 (491)
T ss_dssp             HHHHH----HHHHHHHHTTTTHHHHHHHHHSSC-TTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHH----HHHHTTC
T ss_pred             HHHHH----HHHHHHHHhHHHHHHHHHHHHhCC-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----Hhhhhhh
Confidence            11111    1122222221 2223457789886 47899999998888888888776654333221100    0012344


Q ss_pred             HHHHHHHHHHHHHHHHHHhcccccccc
Q 021040          204 WIAYSSIFIGCCFVGIFLSRTEEPRLK  230 (318)
Q Consensus       204 ~~~~i~~~~~~l~~~~~~~~~~e~~~~  230 (318)
                      +.++++++++++..+..++++||++.+
T Consensus       443 ~~~~i~~~~~~~~~i~~~~~~PETkg~  469 (491)
T 4gc0_A          443 FSYWIYGCMGVLAALFMWKFVPETKGK  469 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCCCTTC
T ss_pred             HHHHHHHHHHHHHHHHHHheecCCCCC
Confidence            566778888888888888899998644

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=98.88  E-value=2.4e-09  Score=100.56  Aligned_cols=170  Identities=9%  Similarity=-0.126  Sum_probs=100.3

Q ss_pred             HHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHH----HHHHHHHHHHHHHHhCCCCCC
Q 021040           40 AACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWH----GAGSVLVAVSFSSVFGGCMPC  114 (318)
Q Consensus        40 ~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l----~~g~~~~~i~~~~~~~~~~~~  114 (318)
                      ......+++.|..+. +.+..+.+.......+...+..++.|+++||+|||++..    ..+.++.++++..+..  ...
T Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~--~~~  376 (491)
T 4aps_A          299 EEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAI--PGA  376 (491)
T ss_dssp             HGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHH--HHH
T ss_pred             HhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHH--HHH
Confidence            333446778888885 777677788888888888999999999999999986532    1455555555332210  000


Q ss_pred             cc--cCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 021040          115 RI--LSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTA  192 (318)
Q Consensus       115 ~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~  192 (318)
                      ..  ..+.+.......    .++.+++.+...+...++..|..| +++|+++.++.+....+|..+++.+.    +... 
T Consensus       377 ~~~~~~~~~~~~~~~~----~~l~g~~~~~~~~~~~~~~~~~~p-~~~~g~~~g~~~~~~~~g~~i~~~~~----~~~~-  446 (491)
T 4aps_A          377 LYGTSGKVSPLWLVGS----WALVILGEMLISPVGLSVTTKLAP-KAFNSQMMSMWFLSSSVGSALNAQLV----TLYN-  446 (491)
T ss_dssp             HCCCCTTCCTHHHHHH----HHHHHHHHHTTTTHHHHHHHHHTT-TTCSSSSTHHHHHHHHHHHHHHHHHG----GGGG-
T ss_pred             hcCCCCCccHHHHHHH----HHHHHHHHHHHhHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHh-
Confidence            00  001122222221    234566666666666778888876 47899999998888888877665442    2222 


Q ss_pred             CcccchhHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 021040          193 KTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEP  227 (318)
Q Consensus       193 ~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~  227 (318)
                            ..++.+.+.+.++++++..++.++..++.
T Consensus       447 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  475 (491)
T 4aps_A          447 ------AKSEVAYFSYFGLGSVVLGIVLVFLSKRI  475 (491)
T ss_dssp             ------GSSTTHHHHHTHHHHHHHHHHHHHC----
T ss_pred             ------cccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  12445566666666666666655555554

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=98.27  E-value=2.4e-07  Score=83.69  Aligned_cols=144  Identities=13%  Similarity=0.011  Sum_probs=89.9

Q ss_pred             hhcccchHHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHH-HHHHHH
Q 021040           28 YYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVL-VAVSFS  105 (318)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~-~~i~~~  105 (318)
                      ...+..+...........+++.|+++. |.++.+.|.+.....+...++.++.|+++||+||| .  ..+... ...+..
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~-~--~~~~~~~~~~~~~  279 (375)
T 2gfp_A          203 CYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL-M--WQSVICCLLAGLL  279 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH-H--HHHHHHHHHTSSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H--HHHHHHHHHHHHH
Confidence            333444444455556667788888884 99999999999999999999999999999999872 2  223322 111110


Q ss_pred             HHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 021040          106 SVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFI  185 (318)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~  185 (318)
                       +    .........+.+.    ..+..++.+++.+...+...++..|..|  ++|+++.+..+....+|..+++.+.+.
T Consensus       280 -~----~~~~~~~~~~~~~----~~~~~~l~g~~~~~~~~~~~~~~~~~~p--~~~g~~~g~~~~~~~~g~~~~~~~~g~  348 (375)
T 2gfp_A          280 -M----WIPDWFGVMNVWT----LLVPAALFFFGAGMLFPLATSGAMEPFP--FLAGTAGALVGGLQNIGSGVLASLSAM  348 (375)
T ss_dssp             -S----SHHHHHHHHHHHH----HHHHHHHHHHHHHHTSSTTHHHHHTHHH--HHHHHHHHHHHHHHHHHHHCCSTTCTH
T ss_pred             -H----HHHhhhccccHHH----HHHHHHHHHHHHHHhhHHHHHHHHHhCC--cccchHHHHHHHHHHHHHHHHHHHHHH
Confidence             0    0000000011111    1122234566777666667777778764  689999999888888777665544433

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=98.12  E-value=6.5e-06  Score=77.73  Aligned_cols=120  Identities=14%  Similarity=0.085  Sum_probs=66.8

Q ss_pred             HHHHHHHHHHHHHHHHhhhhHHHh----hhccCc---hHHHHHHHHHHHHHHHHHhCCCCCCcc--cCccchhHHHHHHH
Q 021040           60 GAAAVMLSGQIADGFATIFIGELI----DRFGHF---KIWHGAGSVLVAVSFSSVFGGCMPCRI--LSTSTLKVETISYC  130 (318)
Q Consensus        60 ~~g~i~~~~~i~~~i~~p~~G~ls----Dr~Grr---~~~l~~g~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  130 (318)
                      ..+.+.....+...+..++.+++.    ||.|||   +..+..+.++.++++..+..  .....  ....+.++....  
T Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~--  411 (524)
T 2xut_A          336 EPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGT--IQLMMDGGSALSIFWQILP--  411 (524)
T ss_dssp             CHHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTT--TTTTTTTTCCCCSHHHHHH--
T ss_pred             cHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHH--HHHHhcCCCCcCHHHHHHH--
Confidence            355555555566667778887775    555543   12245666666666543321  11000  001122222222  


Q ss_pred             HHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 021040          131 VFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIV  186 (318)
Q Consensus       131 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l  186 (318)
                        .++.+++.+...++..++..|..| +++|+++.++.+....+|+.+++.+.+.+
T Consensus       412 --~~l~g~~~~~~~~~~~~~~~~~~p-~~~~g~~~g~~~~~~~~g~~~g~~~~g~~  464 (524)
T 2xut_A          412 --YALLTFGEVLVSATGLEFAYSQAP-KAMKGTIMSFWTLSVTVGNLWVLLANVSV  464 (524)
T ss_dssp             --HHHHHHHHHHHHHHHTTTHHHHCC-TTCCTTTHHHHGGGHHHHHHHHHHHHHHT
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHhCc-HHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence              234667777777777788888876 57899999999888888888776655433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	318
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.89
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.74
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.09
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	98.99

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=1.1e-22  Score=186.63  Aligned_cols=250  Identities=14%  Similarity=0.085  Sum_probs=178.5

Q ss_pred             HHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccchhH
Q 021040           45 TYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKV  124 (318)
Q Consensus        45 ~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~  124 (318)
                      +...++++|.|+|.+|+|++.++..+..++++++.|.++||+||||. +..+.++.+++..+...  .+. .  ..+...
T Consensus        45 ~~~~p~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~-~~~~~~~~~~~~~~~~~--~~~-~--~~~~~~  118 (447)
T d1pw4a_          45 ALAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVF-LPAGLILAAAVMLFMGF--VPW-A--TSSIAV  118 (447)
T ss_dssp             HHHHHHTTSSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHH-HHHHHHHHHHHHHHHHH--CHH-H--HSSSSH
T ss_pred             HHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHH-HHHHHHHHHHHHhhccc--cch-h--hhhHHH
Confidence            45567777789999999999999999999999999999999999998 56777777776554321  110 0  011222


Q ss_pred             HHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchhHHHHH
Q 021040          125 ETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRW  204 (318)
Q Consensus       125 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  204 (318)
                      .+    +..++.+++.+...++..+++.|..+ +++|+++.++.+.+..+|..+++.++..+....         .+|++
T Consensus       119 ~~----~~~~~~g~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~---------~~w~~  184 (447)
T d1pw4a_         119 MF----VLLFLCGWFQGMGWPPCGRTMVHWWS-QKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWF---------NDWHA  184 (447)
T ss_dssp             HH----HHHHHHHHHHHHTHHHHHHHHHTTCT-TTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHT---------CCSTT
T ss_pred             HH----HHHHHHHHhhhhhhhHHHHHHHHHHH-hhcccccccccccccchhhhhhhhhhhhHhhhh---------hcccc
Confidence            22    22345667777777777888889875 578999999999998999888776655544332         35787


Q ss_pred             HHHHHHHHHHHHHHHHHhcccccccccc-----c--------------CCCCchHHHHHHHHhcHHHHHHHHHHHHHHHH
Q 021040          205 IAYSSIFIGCCFVGIFLSRTEEPRLKMG-----L--------------RGNSHARISWAYWFKKILYYQVALVYMLTRLV  265 (318)
Q Consensus       205 ~~~i~~~~~~l~~~~~~~~~~e~~~~~~-----~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (318)
                      .+++.+++.++..++.+...+|++++..     +              ++....+...++.+++|.++......++....
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (447)
T d1pw4a_         185 ALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLL  264 (447)
T ss_dssp             CTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred             cchhhhhhHHHHHHHHHHhcccchhhcccchhhhhhhhcccchhhccccccchhhHHHHHHHcCchHHHHHHHhhhhhhh
Confidence            7777777777777777777766543211     0              00112233467788999999998888888888


Q ss_pred             HHHHHHHhHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021040          266 VNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQVISLKLY  314 (318)
Q Consensus       266 ~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~v~~~i~~~~~~~i~~~~~  314 (318)
                      .+...++.|.|+.+..+.+....+....+..+.++++.++.++++||..
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  313 (447)
T d1pw4a_         265 RYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVF  313 (447)
T ss_dssp             HHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred             hhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhcc
Confidence            8899999999999999998866665555556666666666666666653

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.74  E-value=1.1e-16  Score=143.17  Aligned_cols=270  Identities=11%  Similarity=0.047  Sum_probs=143.3

Q ss_pred             chhhhhhcccchHHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHH
Q 021040           23 RWSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVA  101 (318)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~  101 (318)
                      .++.+.+++..+..........++++.|++|. |+|++++|++.++..+...+.+|+.|+++||+||||++ .++.....
T Consensus         6 n~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l-~~~~~~~~   84 (417)
T d1pv7a_           6 NTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYL-LWIITGML   84 (417)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHH-HHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHH-HHHHHHHH
Confidence            34455566666666777778889999999886 99999999999999999999999999999999999984 55655555


Q ss_pred             HHHHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccC-ccchhHHHHHHHHHHHHHHHHHH
Q 021040          102 VSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLN-STSRVVLTSCRNAFTMVANLSLY  180 (318)
Q Consensus       102 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~R~~~~~~~~~~~~~g~~~~~  180 (318)
                      ++......  .     ..  .........+...+.+.+.+....+......+...+ .+++....+........+..+++
T Consensus        85 ~~~~~~~~--~-----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (417)
T d1pv7a_          85 VMFAPFFI--F-----IF--GPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGA  155 (417)
T ss_dssp             HTHHHHHH--H-----TH--HHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH--h-----hh--hhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhcccccccc
Confidence            54433321  0     00  000011111111111112222221221122121111 22333344444455555555555


Q ss_pred             HHHHHHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhcccccccccc------cCCCCchHHHHHHHHhcHHHHH
Q 021040          181 AIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMG------LRGNSHARISWAYWFKKILYYQ  254 (318)
Q Consensus       181 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~------~~~~~~~~~~~~~~~~~~~~~~  254 (318)
                      .+++.+..           ..+++.+........+...+..+..+|++.+++      ++++.......++.++++..+.
T Consensus       156 ~~~~~l~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (417)
T d1pv7a_         156 SIVGIMFT-----------INNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALELFRQPKLWF  224 (417)
T ss_dssp             HHHHHHHH-----------HCHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSSHHHHSCCCCCCHHHHHHHTTSSHHHH
T ss_pred             cccccccc-----------ccccccccchhhHHHHHHHHHHHHhcccccchhhhhhhhhhcccccccccccccccccccc
Confidence            54433332           234445544444555555555566665543221      1122233444555566666555


Q ss_pred             HHHHHHHHHHHHHHHHHHhHHhhhhcc---ccccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 021040          255 VALVYMLTRLVVNVSQAYLAFYVINDL---RMGQSAKALVPAIIYICSFIVSILLQVISLKL  313 (318)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~yl~~~~---g~~~~~~~~~~~~~~v~~~i~~~~~~~i~~~~  313 (318)
                      ...................+.+.....   +.+............++..++..+.+++.||.
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~  286 (417)
T d1pv7a_         225 LSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI  286 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred             hhhhhHHHHHHHHhhhccccccccccccccccchhhhcccccccccccccchhhhhhhhccc
Confidence            554444444444444444444443332   22233344444455566666666677776664

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.09  E-value=2e-09  Score=96.86  Aligned_cols=175  Identities=8%  Similarity=-0.034  Sum_probs=102.0

Q ss_pred             hhcccchHHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHH
Q 021040           28 YYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSS  106 (318)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~  106 (318)
                      ......+...........+.+.|+.+. +.+..+.+....+..+...++.++.|+++||++||+.... ......+....
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~  331 (447)
T d1pw4a_         253 YIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGAT-GVFFMTLVTIA  331 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHH-HHHHHHHHHHH
T ss_pred             HHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccc-cchhHHHHHHH
Confidence            333444444445555667788888886 9999999999999999999999999999999998765322 22222221111


Q ss_pred             HhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHH-HHHHHHHHHH
Q 021040          107 VFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVA-NLSLYAIAFI  185 (318)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g-~~~~~~~~~~  185 (318)
                      ...  ..  .....+.+...+.    .++.+++.+...........|..+ +++|+++.++.+....++ .++++.+.+.
T Consensus       332 ~~~--~~--~~~~~~~~~~~~~----~~~~g~~~~~~~~~~~~~~~~~~p-~~~~g~~~g~~~~~~~~~g~~~~~~~~g~  402 (447)
T d1pw4a_         332 TIV--YW--MNPAGNPTVDMIC----MIVIGFLIYGPVMLIGLHALELAP-KKAAGTAAGFTGLFGYLGGSVAASAIVGY  402 (447)
T ss_dssp             HHH--TT--SCCTTCHHHHHHH----HHHHHHHHTHHHHHHHHHHHHTSC-TTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHH--HH--hcccccHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            110  11  1111222221111    123455555555556677778875 578999998877666654 4444444444


Q ss_pred             HHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHh
Q 021040          186 VFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLS  222 (318)
Q Consensus       186 l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~  222 (318)
                      +.+.          .+|+..+++.+...++..++...
T Consensus       403 ~~~~----------~g~~~~~~~~~~~~~~~~~~~~~  429 (447)
T d1pw4a_         403 TVDF----------FGWDGGFMVMIGGSILAVILLIV  429 (447)
T ss_dssp             HHHS----------SCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHH----------hChHHHHHHHHHHHHHHHHHHHH
Confidence            4432          34555665555444444444433

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=98.99  E-value=1.8e-09  Score=95.26  Aligned_cols=149  Identities=11%  Similarity=0.021  Sum_probs=103.9

Q ss_pred             CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccchhHHHHHHHHHHH
Q 021040           55 GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAA  134 (318)
Q Consensus        55 gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (318)
                      +.+....+.......+...+..++.|++.||+|||+. +..+.++.+++...+..       .+  +.+...+    ...
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~-~~~~~~~~~~~~~~~~~-------~~--~~~~~~~----~~~  320 (417)
T d1pv7a_         255 EQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNA-LLLAGTIMSVRIIGSSF-------AT--SALEVVI----LKT  320 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHH-HHHHHHHHHHHHHHHHT-------CC--CHHHHHH----HHH
T ss_pred             ccchhhhcccccccccccccchhhhhhhhcccccccc-hhhhHHHHHHhhhcccc-------cc--ccchhhH----HHH
Confidence            4456677888888999999999999999999999988 56677766666554431       11  1222221    123


Q ss_pred             HHHHHHhhhHHhHhhhccccccCccchhHHHHHH-HHHHHHHHHHHHHHHHHHHHhhccCcccchhHHHHHHHHHHHHHH
Q 021040          135 IFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCR-NAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIG  213 (318)
Q Consensus       135 l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~-~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~  213 (318)
                      +.+++.+...++..+++.|..+ +++|++..+.. +....+|..+++.+.+.+.+.          .++++.+++.+++.
T Consensus       321 l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~----------~g~~~~~~~~~~~~  389 (417)
T d1pv7a_         321 LHMFEVPFLLVGCFKYITSQFE-VRFSATIYLVCFCFFKQLAMIFMSVLAGNMYES----------IGFQGAYLVLGLVA  389 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSC-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH----------HCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHCC-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HCHHHHHHHHHHHH
Confidence            5667777777777888888876 57888888864 445567777766665555542          45777888888777


Q ss_pred             HHHHHHHHhcccccc
Q 021040          214 CCFVGIFLSRTEEPR  228 (318)
Q Consensus       214 ~l~~~~~~~~~~e~~  228 (318)
                      ++..++..+..|+++
T Consensus       390 ~~~~~~~~~~l~~~~  404 (417)
T d1pv7a_         390 LGFTLISVFTLSGPG  404 (417)
T ss_dssp             HHHHHHHHHHSCCSS
T ss_pred             HHHHHHHHHhhcCCC
Confidence            777777777776653