Citrus Sinensis ID: 021064

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------32
Protein Sequence
MVVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLAVCISCTFPSDCIVLYIFTKSIIIYHRMNAGPKQVCCCCCPGCWRW
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHHHHHHHHHccEEEEEEEcccccHHHHHHHHHHcccEEEEEccHHHHHHHHHHcHHHHcccccccccccccccEEEEEEcccHHHHHHHHHHcccccccccccccccEEEEccccccccccccHHHHHHcccEEEEccEEEEEccEEEEEccccccHHHHHHHHHHccccEEEEEEEEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHHHHHHHHHHcccEEEEEcccccHHHHHHHHHHHcccEEEEEccHHHHHHHHHHHHHHcccHHHHHHHHHHcccEEEEEEcccHHHHHHHHHHcccccccccccEccccEEEccccccccccccHHHHHcccccEEcccEEEEEccEEEEEccccccHHHHHHHHHccccccEEEEEEEEEEccccEccHHHccccHHHHHHHHHHHHHHHHHHHHHcccccHccHHHHHHHHHHHHHHHHEHcccccHHHHHHHHHHHHHHHHHHcccHEEEEEHHHHHHHHHHHHcccccEccccccccccc
Coil and Loop (DISEMBL)
MVVKASKAEKKIAYDAKLCQLLEEYTQILVAAAdnvgsnqlqnirrglrgdSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLqgnvgliftkgdLKEVKEEVAKYkvgaparvglvapidvvvppgntgldpsqtsffqvlniptkinkgtveiiTPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVyengsvyspevldlseDDLVEKFASSVSMVTALALAIsyptlaaapHMFVNAYKNVVAVALATEYSFPQADKVKEYLAVCIsctfpsdcivLYIFTKSIIIYHrmnagpkqvcccccpgcwrw
Flexible Loop (DISEMBL)
mvvkaskaekkiayDAKLCQLLEEYTQILVAAADnvgsnqlqnirrglrgdsvvlMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLKEVKEEVAKYkvgaparvglvaPIDVVVPPGNTGLDPSQTSFFQVLniptkinkgtveiITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLAVCISCTFPSDCIVLYIFTKSIIIYHRMNAGPKQVCCCCCPGCWRW
Low Complexity Region (SEG)
MVVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLkevkeevakykvGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLAVCISCTFPSDCIVLYIFTKSIIIYHRMNAGPKQVcccccPGCWRW
Disordered region (IsUnstruct)
**********KIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLAVCISCTFPSDCIVLYIFTKSIIIYHRMNAGPKQVCCCCCPGCWR*
Disordered Region (DISOPRED)
**********KIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLAVCISCTFPSDCIVLYIFTKSIIIYHRMNAGPKQVCCCCCPGCWRW
Disordered Region (DISEMBL)
********EKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLAVCISCTFPSDCIVLYIFTKSIIIYHRMNAGPKQVCCCCCPGCWRW
Disordered Region (DISPRO)
*****SKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLAVCISCTFPSDCIVLYIFTKSIIIYHRMNAGPKQVCCCCCPGCWRW
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLAVCISCTFPSDCIVLYIFTKSIIIYHRMNAGPKQVCCCCCPGCWRW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	318	2.2.26 [Sep-21-2011]
Q42112	320	60S acidic ribosomal prot	yes	no	0.852	0.846	0.874	1e-140
O04204	317	60S acidic ribosomal prot	no	no	0.855	0.858	0.871	1e-139
P50346	320	60S acidic ribosomal prot	yes	no	0.855	0.85	0.882	1e-139
P57691	323	60S acidic ribosomal prot	yes	no	0.852	0.839	0.863	1e-139
P50345	322	60S acidic ribosomal prot	N/A	no	0.855	0.844	0.830	1e-126
P41095	319	60S acidic ribosomal prot	yes	no	0.855	0.852	0.805	1e-124
O24573	319	60S acidic ribosomal prot	N/A	no	0.855	0.852	0.805	1e-121
P29764	321	60S acidic ribosomal prot	N/A	no	0.761	0.753	0.805	1e-112
Q9DG68	315	60S acidic ribosomal prot	N/A	no	0.842	0.850	0.540	5e-80
Q9U3U0	317	60S acidic ribosomal prot	N/A	no	0.845	0.848	0.516	7e-79

>sp|Q42112|RLA02_ARATH 60S acidic ribosomal protein P0-2 OS=Arabidopsis thaliana GN=RPP0B PE=1 SV=2

 Score =  497 bits (1279), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 237/271 (87%), Positives = 261/271 (96%)

Query: 2   VVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTM 61
           +VKA+KAEKKIAYD KLCQL++EYTQILV AADNVGS QLQNIR+GLRGDSVVLMGKNTM
Sbjct: 1   MVKATKAEKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTM 60

Query: 62  MKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLVAP 121
           MKR++R+H+E TGNTA LNL+PLLQGNVGLIFTKGDLKEV EEVAKYKVGAPARVGLVAP
Sbjct: 61  MKRSVRIHSENTGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAP 120

Query: 122 IDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKL 181
           IDVVV PGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI++GDKVGSSEAALLAKL
Sbjct: 121 IDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAKL 180

Query: 182 GIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAP 241
           GIRPFSYGLVVQSVY+NGSV+SPEVLDL+ED LVEKFAS +SMVT+LALA+SYPTLAAAP
Sbjct: 181 GIRPFSYGLVVQSVYDNGSVFSPEVLDLTEDQLVEKFASGISMVTSLALAVSYPTLAAAP 240

Query: 242 HMFVNAYKNVVAVALATEYSFPQADKVKEYL 272
           HMF+NAYKN +A+A+ATEY+FPQA+KVKEYL
Sbjct: 241 HMFINAYKNALAIAVATEYTFPQAEKVKEYL 271

Ribosomal protein P0 is the functional equivalent of E.coli protein L10.
Arabidopsis thaliana (taxid: 3702)

>sp|O04204|RLA01_ARATH 60S acidic ribosomal protein P0-1 OS=Arabidopsis thaliana GN=RPP0A PE=1 SV=1

 Score =  494 bits (1273), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 237/272 (87%), Positives = 262/272 (96%)

Query: 1   MVVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNT 60
           M VKA+KAEKKI YD+KLCQLL EY+QILV AADNVGS QLQNIR+GLRGDSVVLMGKNT
Sbjct: 1   MAVKATKAEKKIVYDSKLCQLLNEYSQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNT 60

Query: 61  MMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLVA 120
           MMKR++R+HA+KTGN AFL+L+PLLQGNVGLIFTKGDLKEV EEVAKYKVGAPARVGLVA
Sbjct: 61  MMKRSVRIHADKTGNQAFLSLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVA 120

Query: 121 PIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAK 180
           PIDVVV PGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI+KGDKVGSSEAALLAK
Sbjct: 121 PIDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAK 180

Query: 181 LGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAA 240
           LGIRPFSYGLVV+SVY+NGSV++PEVL+L+EDDLVEKFA+ VSM+TAL+LAISYPT+AAA
Sbjct: 181 LGIRPFSYGLVVESVYDNGSVFNPEVLNLTEDDLVEKFAAGVSMITALSLAISYPTVAAA 240

Query: 241 PHMFVNAYKNVVAVALATEYSFPQADKVKEYL 272
           PHMF+NAYKNV+AVALATEYSFPQA+ VKE+L
Sbjct: 241 PHMFLNAYKNVLAVALATEYSFPQAENVKEFL 272

Ribosomal protein P0 is the functional equivalent of E.coli protein L10.

Arabidopsis thaliana (taxid: 3702)

>sp|P50346|RLA0_SOYBN 60S acidic ribosomal protein P0 OS=Glycine max PE=2 SV=1

 Score =  494 bits (1272), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 240/272 (88%), Positives = 258/272 (94%)

Query: 1   MVVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNT 60
           M  K +KAEKKIAYDAKLC L+EEY QILV  +DNVGSNQLQNIR+GLRGDSVVLMGKNT
Sbjct: 1   MAPKQTKAEKKIAYDAKLCDLMEEYGQILVVNSDNVGSNQLQNIRKGLRGDSVVLMGKNT 60

Query: 61  MMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLVA 120
           MMKR++RMHAEKTGN A+LNLIPLL GNVGLIFTKGDLKEV EEVAKYKVGAPARVGLVA
Sbjct: 61  MMKRSVRMHAEKTGNNAYLNLIPLLVGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVA 120

Query: 121 PIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAK 180
           PIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAK
Sbjct: 121 PIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAK 180

Query: 181 LGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAA 240
           LGIRPFSYGLVV SVY+NGSV+SPEVLDL+EDDL+ KFA+ VSMVT+L+LAISYPTLAAA
Sbjct: 181 LGIRPFSYGLVVLSVYDNGSVFSPEVLDLTEDDLIGKFAAGVSMVTSLSLAISYPTLAAA 240

Query: 241 PHMFVNAYKNVVAVALATEYSFPQADKVKEYL 272
           PHMFVNAYKNV+AVA+ T+YSFP+ADKVKEYL
Sbjct: 241 PHMFVNAYKNVLAVAVETDYSFPEADKVKEYL 272

Ribosomal protein P0 is the functional equivalent of E.coli protein L10.

Glycine max (taxid: 3847)

>sp|P57691|RLA03_ARATH 60S acidic ribosomal protein P0-3 OS=Arabidopsis thaliana GN=RPP0C PE=1 SV=1

 Score =  493 bits (1269), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 234/271 (86%), Positives = 261/271 (96%)

Query: 2   VVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTM 61
           +VKA+KAEKKIAYD KLCQL++EYTQILV AADNVGS QLQNIR+GLRGDSVVLMGKNTM
Sbjct: 1   MVKATKAEKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTM 60

Query: 62  MKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLVAP 121
           MKR++R+H+E +GNTA LNL+PLLQGNVGLIFTKGDLKEV EEVAKYKVGAPARVGLVAP
Sbjct: 61  MKRSVRIHSENSGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAP 120

Query: 122 IDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKL 181
           IDVVV PGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI++GDKVGSSEAALLAKL
Sbjct: 121 IDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAKL 180

Query: 182 GIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAP 241
           GIRPFSYGLVVQSVY+NGSV+SPEVLDL+ED LVEKFAS +SMVT+LALA+SYPTLAAAP
Sbjct: 181 GIRPFSYGLVVQSVYDNGSVFSPEVLDLTEDQLVEKFASGISMVTSLALAVSYPTLAAAP 240

Query: 242 HMFVNAYKNVVAVALATEYSFPQADKVKEYL 272
           HMF+NAYKN +A+A+AT+Y+FPQA+KVKE+L
Sbjct: 241 HMFINAYKNALAIAVATDYTFPQAEKVKEFL 271

Ribosomal protein P0 is the functional equivalent of E.coli protein L10.

Arabidopsis thaliana (taxid: 3702)

>sp|P50345|RLA0_LUPLU 60S acidic ribosomal protein P0 OS=Lupinus luteus PE=2 SV=1

 Score =  451 bits (1159), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 226/272 (83%), Positives = 244/272 (89%)

Query: 1   MVVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNT 60
           M  KA+KAEKKI YD KLCQLL+EYTQILV  ADNVGS QLQNIR+GLRGDSVVLMGKNT
Sbjct: 1   MAPKATKAEKKIVYDGKLCQLLDEYTQILVVNADNVGSKQLQNIRQGLRGDSVVLMGKNT 60

Query: 61  MMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLVA 120
           MMKR++R+HAEKTGN AFLNLIPLL GNVGLIFTKG LKEV EEVAKYKVGAPA VGLVA
Sbjct: 61  MMKRSVRIHAEKTGNQAFLNLIPLLIGNVGLIFTKGYLKEVSEEVAKYKVGAPACVGLVA 120

Query: 121 PIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAK 180
           PIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI+KGDKVGSSEAALLAK
Sbjct: 121 PIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAK 180

Query: 181 LGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAA 240
           LGIRPFSYGLVV SVY+NGSV+ PEVLDL+EDDL+EKFA  VS       +   P  +AA
Sbjct: 181 LGIRPFSYGLVVLSVYDNGSVFKPEVLDLTEDDLLEKFAIGVSQCYFSDTSHFIPNPSAA 240

Query: 241 PHMFVNAYKNVVAVALATEYSFPQADKVKEYL 272
           PH+F+NAYKNV+AVA+ATEYSFPQAD+VKEYL
Sbjct: 241 PHVFINAYKNVLAVAVATEYSFPQADEVKEYL 272

Ribosomal protein P0 is the functional equivalent of E.coli protein L10.

Lupinus luteus (taxid: 3873)

>sp|P41095|RLA0_ORYSJ 60S acidic ribosomal protein P0 OS=Oryza sativa subsp. japonica GN=Os08g0130500 PE=1 SV=3

 Score =  446 bits (1146), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 219/272 (80%), Positives = 255/272 (93%)

Query: 1   MVVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNT 60
           M +K +KAEKK+AYD KLCQLL+EYT++L+A ADNVGSNQLQ IR+GLRGDS+VLMGKNT
Sbjct: 1   MAIKRTKAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNT 60

Query: 61  MMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLVA 120
           +++R I++HA+ TGN  FL L+PLL GNVGLIFTKGDLKEV+EEVAKYKVGAPARVGLVA
Sbjct: 61  LIRRCIKVHADNTGNKEFLELMPLLVGNVGLIFTKGDLKEVREEVAKYKVGAPARVGLVA 120

Query: 121 PIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAK 180
           P+DVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI+KGDKVGSSE+ALLAK
Sbjct: 121 PVDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSESALLAK 180

Query: 181 LGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAA 240
           LGIRPFSYGLV+ +VY++GSV+SPEVLDL+EDDL+EKFAS VSMV +++LAISYPT+AAA
Sbjct: 181 LGIRPFSYGLVITNVYDSGSVFSPEVLDLTEDDLMEKFASGVSMVASVSLAISYPTIAAA 240

Query: 241 PHMFVNAYKNVVAVALATEYSFPQADKVKEYL 272
           PHMF+N YKNV+AVA+ TEYS+P ADK+KEYL
Sbjct: 241 PHMFLNGYKNVLAVAVETEYSYPHADKIKEYL 272

Ribosomal protein P0 is the functional equivalent of E.coli protein L10.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O24573|RLA0_MAIZE 60S acidic ribosomal protein P0 OS=Zea mays GN=RP-P0 PE=1 SV=3

 Score =  434 bits (1116), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 219/272 (80%), Positives = 251/272 (92%)

Query: 1   MVVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNT 60
           M +K +KAEKKIAYD KLC LL+EYT++L+A ADNVGS QLQ+IRRGLRGDSVVLMGKNT
Sbjct: 1   MAIKRTKAEKKIAYDKKLCSLLDEYTKVLIALADNVGSKQLQDIRRGLRGDSVVLMGKNT 60

Query: 61  MMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLVA 120
           +++R I+++AEKTGN  F  L+ LL GNVGLIFTKGDLKEV+EEVAKYKVGAPARVGLVA
Sbjct: 61  LIRRCIKVYAEKTGNHTFDPLMDLLVGNVGLIFTKGDLKEVREEVAKYKVGAPARVGLVA 120

Query: 121 PIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAK 180
           P+DVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI+KG+KVGSSE+ALLAK
Sbjct: 121 PVDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGEKVGSSESALLAK 180

Query: 181 LGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAA 240
           LGIRPFSYGL V SVYE+GSV+SPEVLDLSE+DL+EKFA+ VSMV +L+LAISYPTLAA 
Sbjct: 181 LGIRPFSYGLQVTSVYEDGSVFSPEVLDLSEEDLIEKFATGVSMVASLSLAISYPTLAAV 240

Query: 241 PHMFVNAYKNVVAVALATEYSFPQADKVKEYL 272
           PHMF+N YKNV+AVA+ T+YS+P ADK+KEYL
Sbjct: 241 PHMFINGYKNVLAVAVETDYSYPHADKIKEYL 272

Ribosomal protein P0 is the functional equivalent of E.coli protein L10.

Zea mays (taxid: 4577)

>sp|P29764|RLA0_CHERU 60S acidic ribosomal protein P0 OS=Chenopodium rubrum PE=2 SV=1

 Score =  406 bits (1044), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 195/242 (80%), Positives = 221/242 (91%)

Query: 1   MVVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNT 60
           M VK +KAEKKIAYD KLCQLL+EY+Q+L+A+ADNVGSNQLQ IR GLRGDS+VLMGKNT
Sbjct: 1   MAVKPTKAEKKIAYDQKLCQLLDEYSQVLIASADNVGSNQLQAIRIGLRGDSIVLMGKNT 60

Query: 61  MMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLVA 120
           MMKR+IR+HAE TGN    N+  L   NVGLIFTKGDL +V+EE++KYKVGAPAR GLVA
Sbjct: 61  MMKRSIRLHAENTGNENLRNVEQLFLPNVGLIFTKGDLNQVREEISKYKVGAPARFGLVA 120

Query: 121 PIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAK 180
           PIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIIT VELI+KG+KVGSSEAALLAK
Sbjct: 121 PIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITAVELIKKGEKVGSSEAALLAK 180

Query: 181 LGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAA 240
           LGIRPFSYGL V+SVY++GSV+SPEVLDL+EDDL+ +FA+ VSMVT+L+LAISYPTLAAA
Sbjct: 181 LGIRPFSYGLNVESVYDDGSVFSPEVLDLTEDDLLARFATGVSMVTSLSLAISYPTLAAA 240

Query: 241 PH 242
           PH
Sbjct: 241 PH 242

Ribosomal protein P0 is the functional equivalent of E.coli protein L10.

Chenopodium rubrum (taxid: 3560)

>sp|Q9DG68|RLA0_RANSY 60S acidic ribosomal protein P0 OS=Rana sylvatica GN=RPLP0 PE=2 SV=1

 Score =  298 bits (762), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 146/270 (54%), Positives = 193/270 (71%), Gaps = 2/270 (0%)

Query: 4   KASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMK 63
           +  +A  K  Y  K+ QLL++Y +  +  ADNVGS Q+Q IR  LRG +VVLMGKNTMM+
Sbjct: 3   REDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMR 62

Query: 64  RTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLVAPID 123
           + IR H E   N+A   L+P ++GNVG +FTK DL EV++ +   KV A AR G +AP D
Sbjct: 63  KAIRGHLEN--NSALEKLLPHIKGNVGFVFTKEDLAEVRDMLLANKVPASARAGAIAPCD 120

Query: 124 VVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGI 183
           V VP  NTGL P +TSFFQ L I TKI++GT+EI++ V+LI+ GDKVG+SEA LL  L I
Sbjct: 121 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 180

Query: 184 RPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHM 243
            PFS+GL++Q VY+NGS+YSPEVLD++ED L  +F   V  + ++ L I YPT+A+ PH 
Sbjct: 181 SPFSFGLIIQQVYDNGSIYSPEVLDITEDALRARFLEGVRNIASVCLQIGYPTVASVPHS 240

Query: 244 FVNAYKNVVAVALATEYSFPQADKVKEYLA 273
            VN YK V+A+A+ T+YSFP ADKVK +LA
Sbjct: 241 VVNGYKRVLALAVETDYSFPLADKVKAFLA 270

Ribosomal protein P0 is the functional equivalent of E.coli protein L10.

Rana sylvatica (taxid: 45438)

>sp|Q9U3U0|RLA0_CERCA 60S acidic ribosomal protein P0 OS=Ceratitis capitata GN=RpLP0 PE=3 SV=1

 Score =  294 bits (752), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 140/271 (51%), Positives = 195/271 (71%), Gaps = 2/271 (0%)

Query: 2   VVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTM 61
           +V+ +KA  K  Y  K+ +L +EY +  +  ADNVGS Q+QNIR  LRG  VVLMGKNTM
Sbjct: 1   MVRENKAAWKAQYFLKVVELFDEYPKCFIVGADNVGSKQMQNIRTSLRGLGVVLMGKNTM 60

Query: 62  MKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLVAP 121
           M++ IR H E   N     L+P ++GNVG +FTKGDL EV++++ + KV APAR G +AP
Sbjct: 61  MRKAIRGHLEN--NAQLEKLLPHIKGNVGFVFTKGDLAEVRDKLLESKVRAPARAGAIAP 118

Query: 122 IDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKL 181
           + V++P  NTGL P +TSFFQ L+IPTKI+KGT+EII  V +++ GDKVG+SEA LL  L
Sbjct: 119 LPVIIPAQNTGLGPEKTSFFQALSIPTKISKGTIEIINDVPILKPGDKVGASEATLLNML 178

Query: 182 GIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAP 241
            I PFSYGL +  VY++GS++SPE+LD+  +DL  KF + V+ + A++L I YPT+A+AP
Sbjct: 179 NISPFSYGLAITQVYDSGSIFSPEILDIKPEDLRAKFQAGVANLAAVSLQIGYPTIASAP 238

Query: 242 HMFVNAYKNVVAVALATEYSFPQADKVKEYL 272
           H   N +KN++A+A +TE  F QA  +KE++
Sbjct: 239 HSIANGFKNLLAIAASTEVEFKQAATIKEFI 269

Ribosomal protein P0 is the functional equivalent of E.coli protein L10.

Ceratitis capitata (taxid: 7213)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	318
225448367	320	PREDICTED: 60S acidic ribosomal protein	0.855	0.85	0.900	1e-142
147843260	320	hypothetical protein VITISV_003812 [Viti	0.855	0.85	0.897	1e-141
225449110	320	PREDICTED: 60S acidic ribosomal protein	0.855	0.85	0.893	1e-140
313586449	320	60S acidic ribosomal protein P0A [Hevea	0.855	0.85	0.897	1e-140
313586451	320	60S acidic ribosomal protein P0B [Hevea	0.855	0.85	0.893	1e-140
224109342	320	predicted protein [Populus trichocarpa]	0.855	0.85	0.878	1e-139
118486293	320	unknown [Populus trichocarpa] gi|1184877	0.855	0.85	0.875	1e-138
224101117	322	predicted protein [Populus trichocarpa]	0.855	0.844	0.867	1e-138
15232603	320	60S acidic ribosomal protein P0-2 [Arabi	0.852	0.846	0.874	1e-138
297833676	322	60S acidic ribosomal protein P0 [Arabido	0.852	0.841	0.874	1e-138

>gi|225448367|ref|XP_002268645.1| PREDICTED: 60S acidic ribosomal protein P0 [Vitis vinifera]

 Score =  509 bits (1312), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 245/272 (90%), Positives = 265/272 (97%)

Query: 1   MVVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNT 60
           M VK SKA+KKIAYD KLCQLL+EY+QIL+AAADNVGSNQLQNIR+GLRGDSVVLMGKNT
Sbjct: 1   MAVKPSKADKKIAYDQKLCQLLDEYSQILIAAADNVGSNQLQNIRKGLRGDSVVLMGKNT 60

Query: 61  MMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLVA 120
           MMKR+IR+HAEKTGNTAFLNLIPLL GNVGLIFTKGDLKEV EEVAKYKVGAPARVGLVA
Sbjct: 61  MMKRSIRLHAEKTGNTAFLNLIPLLVGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVA 120

Query: 121 PIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAK 180
           PIDV+VPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI+KGDKVGSSEAALLAK
Sbjct: 121 PIDVIVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAK 180

Query: 181 LGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAA 240
           LGIRPFSYGLVV SVY+NGSV+SPEVLDL+E+DL+EKFA+ VSMVT+L+LAISYPTLAAA
Sbjct: 181 LGIRPFSYGLVVLSVYDNGSVFSPEVLDLTEEDLIEKFAAGVSMVTSLSLAISYPTLAAA 240

Query: 241 PHMFVNAYKNVVAVALATEYSFPQADKVKEYL 272
           PHMF+NAYKNV+AVA+ATEYSFPQADKVKEYL
Sbjct: 241 PHMFINAYKNVLAVAVATEYSFPQADKVKEYL 272

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147843260|emb|CAN80537.1| hypothetical protein VITISV_003812 [Vitis vinifera]

 Score =  506 bits (1302), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 244/272 (89%), Positives = 264/272 (97%)

Query: 1   MVVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNT 60
           M VK SKA+KKIAYD KLCQLL+EYTQIL+AAADNVGSNQLQNIR+GLRGDSVVLMGKNT
Sbjct: 1   MAVKPSKADKKIAYDQKLCQLLDEYTQILIAAADNVGSNQLQNIRKGLRGDSVVLMGKNT 60

Query: 61  MMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLVA 120
           MMKR+IR+HAEKTGN AFLNLIPLL GNVGLIFT+GDLKEV EEVAKYKVGAPARVGLVA
Sbjct: 61  MMKRSIRLHAEKTGNQAFLNLIPLLVGNVGLIFTRGDLKEVSEEVAKYKVGAPARVGLVA 120

Query: 121 PIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAK 180
           PIDV+VPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAK
Sbjct: 121 PIDVIVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAK 180

Query: 181 LGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAA 240
           LGIRPFSYGLVV SVY+NGSV+SPEVLDL+E+DL+EKFA+ VSMVT+L+LAISYPTLAAA
Sbjct: 181 LGIRPFSYGLVVLSVYDNGSVFSPEVLDLTEEDLMEKFAAGVSMVTSLSLAISYPTLAAA 240

Query: 241 PHMFVNAYKNVVAVALATEYSFPQADKVKEYL 272
           PHMFVNAYKNV++VA+ATEYSFPQADKVKE+L
Sbjct: 241 PHMFVNAYKNVLSVAVATEYSFPQADKVKEFL 272

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225449110|ref|XP_002276842.1| PREDICTED: 60S acidic ribosomal protein P0 [Vitis vinifera]

 Score =  504 bits (1299), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 243/272 (89%), Positives = 264/272 (97%)

Query: 1   MVVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNT 60
           M VK SKA+KKIAYD KLCQLL+EYTQIL+AAADNVGSNQLQNIR+GLRGDSVVLMGKNT
Sbjct: 1   MAVKPSKADKKIAYDQKLCQLLDEYTQILIAAADNVGSNQLQNIRKGLRGDSVVLMGKNT 60

Query: 61  MMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLVA 120
           MMKR+IR+HAEKTGN AFLNLIPLL GNVGLIFT+GDLKEV EEVAKYKVGAPARVGLVA
Sbjct: 61  MMKRSIRLHAEKTGNQAFLNLIPLLVGNVGLIFTRGDLKEVSEEVAKYKVGAPARVGLVA 120

Query: 121 PIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAK 180
           PIDV+VPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAK
Sbjct: 121 PIDVIVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAK 180

Query: 181 LGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAA 240
           LGIRPFSYGLVV SVY+NGSV+SPEVLDL+E+DL+EKFA+ VSMVT+L+LAISYPTLAAA
Sbjct: 181 LGIRPFSYGLVVLSVYDNGSVFSPEVLDLTEEDLMEKFAAGVSMVTSLSLAISYPTLAAA 240

Query: 241 PHMFVNAYKNVVAVALATEYSFPQADKVKEYL 272
           PHMFVNAYKNV++VA+AT+YSFPQADKVKE+L
Sbjct: 241 PHMFVNAYKNVLSVAVATDYSFPQADKVKEFL 272

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|313586449|gb|ADR71235.1| 60S acidic ribosomal protein P0A [Hevea brasiliensis]

 Score =  504 bits (1297), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 244/272 (89%), Positives = 263/272 (96%)

Query: 1   MVVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNT 60
           M  K SKA+KKIAYDAKLCQLL+EY+QIL+ AADNVGSNQLQNIR+GLRGDSVVLMGKNT
Sbjct: 1   MAGKPSKADKKIAYDAKLCQLLDEYSQILIVAADNVGSNQLQNIRQGLRGDSVVLMGKNT 60

Query: 61  MMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLVA 120
           MMKRTIR+H+EKTGNTAFLNLIPLLQGNVGLIFTKGDLKEV EEVAKYKVGAPARVGLVA
Sbjct: 61  MMKRTIRVHSEKTGNTAFLNLIPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVA 120

Query: 121 PIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAK 180
           PIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI+KGDKVGSSEAALLAK
Sbjct: 121 PIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAK 180

Query: 181 LGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAA 240
           LGIRPFSYGLVV S Y+NGSV+SPEVLDL+EDDLVEKFA+ VSMVT+LALAISYPTLAAA
Sbjct: 181 LGIRPFSYGLVVLSAYDNGSVFSPEVLDLTEDDLVEKFATGVSMVTSLALAISYPTLAAA 240

Query: 241 PHMFVNAYKNVVAVALATEYSFPQADKVKEYL 272
           PHMFVNAYKNV+A+A+ATEYSFP+A+ V+EYL
Sbjct: 241 PHMFVNAYKNVLAIAVATEYSFPRAETVREYL 272

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|313586451|gb|ADR71236.1| 60S acidic ribosomal protein P0B [Hevea brasiliensis]

 Score =  503 bits (1295), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 243/272 (89%), Positives = 263/272 (96%)

Query: 1   MVVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNT 60
           M  K SKA+KK+AYDAKLCQLL+EY+QIL+ AADNVGSNQLQNIR+GLRGDSVVLMGKNT
Sbjct: 1   MAGKPSKADKKMAYDAKLCQLLDEYSQILIVAADNVGSNQLQNIRQGLRGDSVVLMGKNT 60

Query: 61  MMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLVA 120
           MMKRTIR+H+EKTGNTAFLNLIPLLQGNVGLIFTKGDLKEV EEVAKYKVGAPARVGLVA
Sbjct: 61  MMKRTIRVHSEKTGNTAFLNLIPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVA 120

Query: 121 PIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAK 180
           PIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI+KGDKVGSSEAALLAK
Sbjct: 121 PIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAK 180

Query: 181 LGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAA 240
           LGIRPFSYGLVV S Y+NGSV+SPEVLDL+EDDLVEKFA+ VSMVT+LALAISYPTLAAA
Sbjct: 181 LGIRPFSYGLVVLSAYDNGSVFSPEVLDLTEDDLVEKFATGVSMVTSLALAISYPTLAAA 240

Query: 241 PHMFVNAYKNVVAVALATEYSFPQADKVKEYL 272
           PHMFVNAYKNV+A+A+ATEYSFP+A+ V+EYL
Sbjct: 241 PHMFVNAYKNVLAIAVATEYSFPRAETVREYL 272

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224109342|ref|XP_002315165.1| predicted protein [Populus trichocarpa] gi|222864205|gb|EEF01336.1| predicted protein [Populus trichocarpa]

 Score =  500 bits (1287), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 239/272 (87%), Positives = 262/272 (96%)

Query: 1   MVVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNT 60
           MV K SKA+KKIAYDAKLCQLL+EY+QIL+AAADNVGS QLQNIRRGLRGDSVVLMGKNT
Sbjct: 1   MVNKLSKADKKIAYDAKLCQLLDEYSQILIAAADNVGSTQLQNIRRGLRGDSVVLMGKNT 60

Query: 61  MMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLVA 120
           MMKR++R+H+EKTGN AFLNLIPLLQGNVGLIFTKGDLKEV EEVAKYKVGAPARVGLVA
Sbjct: 61  MMKRSVRIHSEKTGNKAFLNLIPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVA 120

Query: 121 PIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAK 180
           PIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI+KGDKVGSSEAALLAK
Sbjct: 121 PIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAK 180

Query: 181 LGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAA 240
           LGIRPFSYGLVV S Y+NGSV+SPEVLDL+EDDL++KFA+ VSM+ +L+LA SYPTLAAA
Sbjct: 181 LGIRPFSYGLVVLSAYDNGSVFSPEVLDLTEDDLIDKFAAGVSMIASLSLATSYPTLAAA 240

Query: 241 PHMFVNAYKNVVAVALATEYSFPQADKVKEYL 272
           PHMF+NAYKNV+AVA+ATEYSFPQA+KVKE+L
Sbjct: 241 PHMFINAYKNVLAVAVATEYSFPQAEKVKEFL 272

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118486293|gb|ABK94988.1| unknown [Populus trichocarpa] gi|118487741|gb|ABK95694.1| unknown [Populus trichocarpa]

 Score =  498 bits (1282), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 238/272 (87%), Positives = 261/272 (95%)

Query: 1   MVVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNT 60
           MV K SKA+KKIAYDAKLCQLL+EY+QIL+AAADNVGS QLQNIRRGLRGDSVVLMGKNT
Sbjct: 1   MVNKLSKADKKIAYDAKLCQLLDEYSQILIAAADNVGSTQLQNIRRGLRGDSVVLMGKNT 60

Query: 61  MMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLVA 120
           MMKR++R+H+EKT N AFLNLIPLLQGNVGLIFTKGDLKEV EEVAKYKVGAPARVGLVA
Sbjct: 61  MMKRSVRIHSEKTANKAFLNLIPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVA 120

Query: 121 PIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAK 180
           PIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI+KGDKVGSSEAALLAK
Sbjct: 121 PIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAK 180

Query: 181 LGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAA 240
           LGIRPFSYGLVV S Y+NGSV+SPEVLDL+EDDL++KFA+ VSM+ +L+LA SYPTLAAA
Sbjct: 181 LGIRPFSYGLVVLSAYDNGSVFSPEVLDLTEDDLIDKFAAGVSMIASLSLATSYPTLAAA 240

Query: 241 PHMFVNAYKNVVAVALATEYSFPQADKVKEYL 272
           PHMF+NAYKNV+AVA+ATEYSFPQA+KVKE+L
Sbjct: 241 PHMFINAYKNVLAVAVATEYSFPQAEKVKEFL 272

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224101117|ref|XP_002312149.1| predicted protein [Populus trichocarpa] gi|222851969|gb|EEE89516.1| predicted protein [Populus trichocarpa]

 Score =  497 bits (1280), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 236/272 (86%), Positives = 263/272 (96%)

Query: 1   MVVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNT 60
           MV K SKA+KKIAYDAKLCQLL+EY+QIL+AAADNVGS QLQNIRRGLRGDSVVLMGKNT
Sbjct: 1   MVNKLSKADKKIAYDAKLCQLLDEYSQILIAAADNVGSTQLQNIRRGLRGDSVVLMGKNT 60

Query: 61  MMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLVA 120
           MMKR++R+H+EKTGN  FLNLIPLLQGNVGLIFTKGDLKEV EEVAKYKVGAPARVGLVA
Sbjct: 61  MMKRSVRIHSEKTGNKTFLNLIPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVA 120

Query: 121 PIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAK 180
           PIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI+KGDKVGSSEAALLAK
Sbjct: 121 PIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAK 180

Query: 181 LGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAA 240
           LGIRPFSYGLVV SVY+NGSV+SP VLDL+EDDLVEKFA+ ++M+T+L+LAISYPTLAAA
Sbjct: 181 LGIRPFSYGLVVLSVYDNGSVFSPTVLDLTEDDLVEKFATGITMITSLSLAISYPTLAAA 240

Query: 241 PHMFVNAYKNVVAVALATEYSFPQADKVKEYL 272
           PHMF+NAYKN+++VA+ATEYS+PQA++VKE+L
Sbjct: 241 PHMFINAYKNILSVAVATEYSYPQAEEVKEFL 272

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15232603|ref|NP_187531.1| 60S acidic ribosomal protein P0-2 [Arabidopsis thaliana] gi|19884289|sp|Q42112.2|RLA02_ARATH RecName: Full=60S acidic ribosomal protein P0-2 gi|6478915|gb|AAF14020.1|AC011436_4 putative 60S acidic ribosomal protein P0 [Arabidopsis thaliana] gi|13877925|gb|AAK44040.1|AF370225_1 putative 60S acidic ribosomal protein P0 [Arabidopsis thaliana] gi|16323458|gb|AAL15223.1| putative 60S acidic ribosomal protein P0 [Arabidopsis thaliana] gi|332641215|gb|AEE74736.1| 60S acidic ribosomal protein P0-2 [Arabidopsis thaliana]

 Score =  497 bits (1279), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 237/271 (87%), Positives = 261/271 (96%)

Query: 2   VVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTM 61
           +VKA+KAEKKIAYD KLCQL++EYTQILV AADNVGS QLQNIR+GLRGDSVVLMGKNTM
Sbjct: 1   MVKATKAEKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTM 60

Query: 62  MKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLVAP 121
           MKR++R+H+E TGNTA LNL+PLLQGNVGLIFTKGDLKEV EEVAKYKVGAPARVGLVAP
Sbjct: 61  MKRSVRIHSENTGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAP 120

Query: 122 IDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKL 181
           IDVVV PGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI++GDKVGSSEAALLAKL
Sbjct: 121 IDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAKL 180

Query: 182 GIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAP 241
           GIRPFSYGLVVQSVY+NGSV+SPEVLDL+ED LVEKFAS +SMVT+LALA+SYPTLAAAP
Sbjct: 181 GIRPFSYGLVVQSVYDNGSVFSPEVLDLTEDQLVEKFASGISMVTSLALAVSYPTLAAAP 240

Query: 242 HMFVNAYKNVVAVALATEYSFPQADKVKEYL 272
           HMF+NAYKN +A+A+ATEY+FPQA+KVKEYL
Sbjct: 241 HMFINAYKNALAIAVATEYTFPQAEKVKEYL 271

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297833676|ref|XP_002884720.1| 60S acidic ribosomal protein P0 [Arabidopsis lyrata subsp. lyrata] gi|297330560|gb|EFH60979.1| 60S acidic ribosomal protein P0 [Arabidopsis lyrata subsp. lyrata]

 Score =  496 bits (1277), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 237/271 (87%), Positives = 261/271 (96%)

Query: 2   VVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTM 61
           +VKA+KAEKKIAYD KLCQL++EYTQILV AADNVGS QLQNIR+GLRGDSVVLMGKNTM
Sbjct: 1   MVKATKAEKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTM 60

Query: 62  MKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLVAP 121
           MKR++R+H+E TGNTA LNL+PLLQGNVGLIFTKGDLKEV EEVAKYKVGAPARVGLVAP
Sbjct: 61  MKRSVRIHSENTGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAP 120

Query: 122 IDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKL 181
           IDVVV PGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI++GDKVGSSEAALLAKL
Sbjct: 121 IDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAKL 180

Query: 182 GIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAP 241
           GIRPFSYGLVVQSVY+NGSV+SPEVLDL+ED LVEKFAS +SMVT+LALAISYPTLAAAP
Sbjct: 181 GIRPFSYGLVVQSVYDNGSVFSPEVLDLTEDQLVEKFASGISMVTSLALAISYPTLAAAP 240

Query: 242 HMFVNAYKNVVAVALATEYSFPQADKVKEYL 272
           HMF+NAYKN +A+A+ATEY+FPQA+KVKE+L
Sbjct: 241 HMFINAYKNALAIAVATEYTFPQAEKVKEFL 271

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	318
TAIR|locus:2083564	320	AT3G09200 [Arabidopsis thalian	0.852	0.846	0.833	6.9e-118
TAIR|locus:2061231	317	AT2G40010 [Arabidopsis thalian	0.855	0.858	0.830	6.2e-117
TAIR|locus:2074623	323	AT3G11250 [Arabidopsis thalian	0.852	0.839	0.822	1e-116
UNIPROTKB|P47826	316	RPLP0 "60S acidic ribosomal pr	0.842	0.848	0.522	3.3e-70
FB|FBgn0000100	317	RpLP0 "Ribosomal protein LP0"	0.845	0.848	0.498	5.5e-70
ZFIN|ZDB-GENE-000629-1	319	rplp0 "ribosomal protein, larg	0.842	0.840	0.516	3.8e-69
UNIPROTKB|F1MDN4	320	RPLP0 "60S acidic ribosomal pr	0.842	0.837	0.503	1e-68
UNIPROTKB|Q95140	318	RPLP0 "60S acidic ribosomal pr	0.842	0.842	0.503	1e-68
UNIPROTKB|P05388	317	RPLP0 "60S acidic ribosomal pr	0.842	0.845	0.503	1e-68
UNIPROTKB|F1PUX4	317	RPLP0 "Uncharacterized protein	0.842	0.845	0.5	1.3e-68

TAIR|locus:2083564 AT3G09200 [Arabidopsis thaliana (taxid:3702)]

 Score = 1161 (413.8 bits), Expect = 6.9e-118, P = 6.9e-118
 Identities = 226/271 (83%), Positives = 250/271 (92%)

Query:     2 VVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTM 61
             +VKA+KAEKKIAYD KLCQL++EYTQILV AADNVGS QLQNIR+GLRGDSVVLMGKNTM
Sbjct:     1 MVKATKAEKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTM 60

Query:    62 MKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAP 121
             MKR++R+H+E TGNTA LNL+PLLQGNVGLIFTKGDL            GAPARVGLVAP
Sbjct:    61 MKRSVRIHSENTGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAP 120

Query:   122 IDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKL 181
             IDVVV PGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI++GDKVGSSEAALLAKL
Sbjct:   121 IDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAKL 180

Query:   182 GIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAP 241
             GIRPFSYGLVVQSVY+NGSV+SPEVLDL+ED LVEKFAS +SMVT+LALA+SYPTLAAAP
Sbjct:   181 GIRPFSYGLVVQSVYDNGSVFSPEVLDLTEDQLVEKFASGISMVTSLALAVSYPTLAAAP 240

Query:   242 HMFVNAYKNVVAVALATEYSFPQADKVKEYL 272
             HMF+NAYKN +A+A+ATEY+FPQA+KVKEYL
Sbjct:   241 HMFINAYKNALAIAVATEYTFPQAEKVKEYL 271

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0006414 "translational elongation" evidence=IEA;ISS

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0009409 "response to cold" evidence=IEP

GO:0009507 "chloroplast" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009651 "response to salt stress" evidence=IEP

GO:0005829 "cytosol" evidence=IDA

GO:0010043 "response to zinc ion" evidence=IEP

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0005507 "copper ion binding" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0001510 "RNA methylation" evidence=RCA

GO:0009664 "plant-type cell wall organization" evidence=RCA

GO:0042545 "cell wall modification" evidence=RCA

TAIR|locus:2061231 AT2G40010 [Arabidopsis thaliana (taxid:3702)]

 Score = 1152 (410.6 bits), Expect = 6.2e-117, P = 6.2e-117
 Identities = 226/272 (83%), Positives = 251/272 (92%)

Query:     1 MVVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNT 60
             M VKA+KAEKKI YD+KLCQLL EY+QILV AADNVGS QLQNIR+GLRGDSVVLMGKNT
Sbjct:     1 MAVKATKAEKKIVYDSKLCQLLNEYSQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNT 60

Query:    61 MMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVA 120
             MMKR++R+HA+KTGN AFL+L+PLLQGNVGLIFTKGDL            GAPARVGLVA
Sbjct:    61 MMKRSVRIHADKTGNQAFLSLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVA 120

Query:   121 PIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAK 180
             PIDVVV PGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI+KGDKVGSSEAALLAK
Sbjct:   121 PIDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAK 180

Query:   181 LGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAA 240
             LGIRPFSYGLVV+SVY+NGSV++PEVL+L+EDDLVEKFA+ VSM+TAL+LAISYPT+AAA
Sbjct:   181 LGIRPFSYGLVVESVYDNGSVFNPEVLNLTEDDLVEKFAAGVSMITALSLAISYPTVAAA 240

Query:   241 PHMFVNAYKNVVAVALATEYSFPQADKVKEYL 272
             PHMF+NAYKNV+AVALATEYSFPQA+ VKE+L
Sbjct:   241 PHMFLNAYKNVLAVALATEYSFPQAENVKEFL 272

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=ISS

GO:0006414 "translational elongation" evidence=IEA;ISS

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0001510 "RNA methylation" evidence=RCA

TAIR|locus:2074623 AT3G11250 [Arabidopsis thaliana (taxid:3702)]

 Score = 1150 (409.9 bits), Expect = 1.0e-116, P = 1.0e-116
 Identities = 223/271 (82%), Positives = 250/271 (92%)

Query:     2 VVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTM 61
             +VKA+KAEKKIAYD KLCQL++EYTQILV AADNVGS QLQNIR+GLRGDSVVLMGKNTM
Sbjct:     1 MVKATKAEKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTM 60

Query:    62 MKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAP 121
             MKR++R+H+E +GNTA LNL+PLLQGNVGLIFTKGDL            GAPARVGLVAP
Sbjct:    61 MKRSVRIHSENSGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAP 120

Query:   122 IDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKL 181
             IDVVV PGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI++GDKVGSSEAALLAKL
Sbjct:   121 IDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAKL 180

Query:   182 GIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAP 241
             GIRPFSYGLVVQSVY+NGSV+SPEVLDL+ED LVEKFAS +SMVT+LALA+SYPTLAAAP
Sbjct:   181 GIRPFSYGLVVQSVYDNGSVFSPEVLDLTEDQLVEKFASGISMVTSLALAVSYPTLAAAP 240

Query:   242 HMFVNAYKNVVAVALATEYSFPQADKVKEYL 272
             HMF+NAYKN +A+A+AT+Y+FPQA+KVKE+L
Sbjct:   241 HMFINAYKNALAIAVATDYTFPQAEKVKEFL 271

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=ISS

GO:0006414 "translational elongation" evidence=IEA;ISS

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0009651 "response to salt stress" evidence=IEP

GO:0005794 "Golgi apparatus" evidence=RCA

UNIPROTKB|P47826 RPLP0 "60S acidic ribosomal protein P0" [Gallus gallus (taxid:9031)]

 Score = 711 (255.3 bits), Expect = 3.3e-70, P = 3.3e-70
 Identities = 141/270 (52%), Positives = 186/270 (68%)

Query:     4 KASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMK 63
             +  +A  K  Y  K+ QLL++Y +  V  ADNVGS Q+Q IR  LRG +VVLMGKNTMM+
Sbjct:     3 REDRATWKSNYFMKIIQLLDDYPKCFVVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMR 62

Query:    64 RTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPID 123
             + IR H E   N A   L+P ++GNVG +FTK DL             A AR G +AP D
Sbjct:    63 KAIRGHLEN--NPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCD 120

Query:   124 VVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGI 183
             V VP  NTGL P +TSFFQ L I TKI++GT+EI++ V+LI+ GDKVG+SEA LL  L I
Sbjct:   121 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 180

Query:   184 RPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHM 243
              PFS+GLV+Q V++NGS+Y+PEVLD++E+ L ++F   V  V ++ L I YPT+A+ PH 
Sbjct:   181 SPFSFGLVIQQVFDNGSIYNPEVLDITEETLHKRFLEGVRNVASVCLQIGYPTIASVPHS 240

Query:   244 FVNAYKNVVAVALATEYSFPQADKVKEYLA 273
              VN YK V+AVA+ T+Y+FP A+KVK +LA
Sbjct:   241 IVNGYKRVLAVAVETDYTFPLAEKVKAFLA 270

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006414 "translational elongation" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

FB|FBgn0000100 RpLP0 "Ribosomal protein LP0" [Drosophila melanogaster (taxid:7227)]

 Score = 709 (254.6 bits), Expect = 5.5e-70, P = 5.5e-70
 Identities = 135/271 (49%), Positives = 186/271 (68%)

Query:     2 VVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTM 61
             +V+ +KA  K  Y  K+ +L +E+ +  +  ADNVGS Q+QNIR  LRG +VVLMGKNTM
Sbjct:     1 MVRENKAAWKAQYFIKVVELFDEFPKCFIVGADNVGSKQMQNIRTSLRGLAVVLMGKNTM 60

Query:    62 MKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAP 121
             M++ IR H E   N     L+P ++GNVG +FTKGDL             APAR G +AP
Sbjct:    61 MRKAIRGHLEN--NPQLEKLLPHIKGNVGFVFTKGDLAEVRDKLLESKVRAPARPGAIAP 118

Query:   122 IDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKL 181
             + V++P  NTGL P +TSFFQ L+IPTKI+KGT+EII  V +++ GDKVG+SEA LL  L
Sbjct:   119 LHVIIPAQNTGLGPEKTSFFQALSIPTKISKGTIEIINDVPILKPGDKVGASEATLLNML 178

Query:   182 GIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAP 241
              I PFSYGL+V  VY++GS++SPE+LD+  +DL  KF   V+ + A+ L++ YPT+A+AP
Sbjct:   179 NISPFSYGLIVNQVYDSGSIFSPEILDIKPEDLRAKFQQGVANLAAVCLSVGYPTIASAP 238

Query:   242 HMFVNAYKNVVAVALATEYSFPQADKVKEYL 272
             H   N +KN++A+A  TE  F +A  +KEY+
Sbjct:   239 HSIANGFKNLLAIAATTEVEFKEATTIKEYI 269

GO:0003735 "structural constituent of ribosome" evidence=ISS;IDA;NAS

GO:0006412 "translation" evidence=ISS

GO:0022625 "cytosolic large ribosomal subunit" evidence=ISS

GO:0005737 "cytoplasm" evidence=NAS

GO:0003906 "DNA-(apurinic or apyrimidinic site) lyase activity" evidence=NAS

GO:0005634 "nucleus" evidence=NAS

GO:0006281 "DNA repair" evidence=NAS

GO:0005840 "ribosome" evidence=IDA;NAS

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0006414 "translational elongation" evidence=IEA

GO:0005811 "lipid particle" evidence=IDA

ZFIN|ZDB-GENE-000629-1 rplp0 "ribosomal protein, large, P0" [Danio rerio (taxid:7955)]

 Score = 701 (251.8 bits), Expect = 3.8e-69, P = 3.8e-69
 Identities = 141/273 (51%), Positives = 185/273 (67%)

Query:     4 KASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMK 63
             +  +A  K  Y  K+ QLL+++ +  +  ADNVGS Q+Q IR  LRG +VVLMGKNTMM+
Sbjct:     3 REDRATWKSNYFLKIIQLLDDFPKCFIVGADNVGSKQMQTIRLSLRGKAVVLMGKNTMMR 62

Query:    64 RTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPID 123
             + IR H E   N A   L+P ++GNVG +FTK DL             A AR G +AP +
Sbjct:    63 KAIRGHLEN--NPALERLLPHIRGNVGFVFTKEDLTEVRDLLLANKVPAAARAGAIAPCE 120

Query:   124 VVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLG- 182
             V VP  NTGL P +TSFFQ L I TKI++GT+EI++ V+LI+ GDKVG+SEA LL  L  
Sbjct:   121 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKPGDKVGASEATLLNMLNM 180

Query:   183 --IRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAA 240
               I PFSYGL++Q VY+NGSVYSPEVLD++ED L ++F   V  + ++ L I YPTLA+ 
Sbjct:   181 LNISPFSYGLIIQQVYDNGSVYSPEVLDITEDALHKRFLKGVRNIASVCLQIGYPTLASI 240

Query:   241 PHMFVNAYKNVVAVALATEYSFPQADKVKEYLA 273
             PH  +N YK V+AV + T+Y+FP A+KVK YLA
Sbjct:   241 PHTIINGYKRVLAVTVETDYTFPLAEKVKAYLA 273

GO:0005622 "intracellular" evidence=IEA

GO:0006414 "translational elongation" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0009790 "embryo development" evidence=IMP

GO:0030529 "ribonucleoprotein complex" evidence=IEA

UNIPROTKB|F1MDN4 RPLP0 "60S acidic ribosomal protein P0" [Bos taurus (taxid:9913)]

 Score = 697 (250.4 bits), Expect = 1.0e-68, P = 1.0e-68
 Identities = 136/270 (50%), Positives = 185/270 (68%)

Query:     4 KASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMK 63
             +  +A  K  Y  K+ QLL++Y +  +  ADNVGS Q+Q IR  LRG +VVLMGKNTMM+
Sbjct:     3 REDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMR 62

Query:    64 RTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPID 123
             + IR H E   N A   L+P ++GNVG +FTK DL             A AR G +AP +
Sbjct:    63 KAIRGHLEN--NPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE 120

Query:   124 VVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGI 183
             V VP  NTGL P +TSFFQ L I TKI++GT+EI++ V+LI+ GDKVG+SEA LL  L I
Sbjct:   121 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 180

Query:   184 RPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHM 243
              PFS+GLV+Q V++NGS+Y+PEVLD++E+ L  +F   V  V ++ L I YPT+A+ PH 
Sbjct:   181 SPFSFGLVIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 240

Query:   244 FVNAYKNVVAVALATEYSFPQADKVKEYLA 273
              +N YK V+A+++ T+Y+FP A+KVK +LA
Sbjct:   241 IINGYKRVLALSVETDYTFPLAEKVKAFLA 270

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

UNIPROTKB|Q95140 RPLP0 "60S acidic ribosomal protein P0" [Bos taurus (taxid:9913)]

 Score = 697 (250.4 bits), Expect = 1.0e-68, P = 1.0e-68
 Identities = 136/270 (50%), Positives = 185/270 (68%)

Query:     4 KASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMK 63
             +  +A  K  Y  K+ QLL++Y +  +  ADNVGS Q+Q IR  LRG +VVLMGKNTMM+
Sbjct:     3 REDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMR 62

Query:    64 RTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPID 123
             + IR H E   N A   L+P ++GNVG +FTK DL             A AR G +AP +
Sbjct:    63 KAIRGHLEN--NPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE 120

Query:   124 VVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGI 183
             V VP  NTGL P +TSFFQ L I TKI++GT+EI++ V+LI+ GDKVG+SEA LL  L I
Sbjct:   121 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 180

Query:   184 RPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHM 243
              PFS+GLV+Q V++NGS+Y+PEVLD++E+ L  +F   V  V ++ L I YPT+A+ PH 
Sbjct:   181 SPFSFGLVIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 240

Query:   244 FVNAYKNVVAVALATEYSFPQADKVKEYLA 273
              +N YK V+A+++ T+Y+FP A+KVK +LA
Sbjct:   241 IINGYKRVLALSVETDYTFPLAEKVKAFLA 270

GO:0005737 "cytoplasm" evidence=ISS

GO:0030529 "ribonucleoprotein complex" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0005840 "ribosome" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0006414 "translational elongation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|P05388 RPLP0 "60S acidic ribosomal protein P0" [Homo sapiens (taxid:9606)]

 Score = 697 (250.4 bits), Expect = 1.0e-68, P = 1.0e-68
 Identities = 136/270 (50%), Positives = 185/270 (68%)

Query:     4 KASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMK 63
             +  +A  K  Y  K+ QLL++Y +  +  ADNVGS Q+Q IR  LRG +VVLMGKNTMM+
Sbjct:     3 REDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMR 62

Query:    64 RTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPID 123
             + IR H E   N A   L+P ++GNVG +FTK DL             A AR G +AP +
Sbjct:    63 KAIRGHLEN--NPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE 120

Query:   124 VVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGI 183
             V VP  NTGL P +TSFFQ L I TKI++GT+EI++ V+LI+ GDKVG+SEA LL  L I
Sbjct:   121 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 180

Query:   184 RPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHM 243
              PFS+GLV+Q V++NGS+Y+PEVLD++E+ L  +F   V  V ++ L I YPT+A+ PH 
Sbjct:   181 SPFSFGLVIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 240

Query:   244 FVNAYKNVVAVALATEYSFPQADKVKEYLA 273
              +N YK V+A+++ T+Y+FP A+KVK +LA
Sbjct:   241 IINGYKRVLALSVETDYTFPLAEKVKAFLA 270

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0019048 "virus-host interaction" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0030529 "ribonucleoprotein complex" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006412 "translation" evidence=NAS;TAS

GO:0003735 "structural constituent of ribosome" evidence=NAS

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0003723 "RNA binding" evidence=TAS

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006413 "translational initiation" evidence=TAS

GO:0006414 "translational elongation" evidence=TAS

GO:0006415 "translational termination" evidence=TAS

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0019058 "viral infectious cycle" evidence=TAS

GO:0019083 "viral transcription" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

UNIPROTKB|F1PUX4 RPLP0 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 696 (250.1 bits), Expect = 1.3e-68, P = 1.3e-68
 Identities = 135/270 (50%), Positives = 185/270 (68%)

Query:     4 KASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMK 63
             +  +A  K  Y  K+ QLL++Y +  +  ADNVGS Q+Q IR  LRG +VVLMGKNTMM+
Sbjct:     3 REDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMR 62

Query:    64 RTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPID 123
             + IR H E   N A   L+P ++GNVG +FTK DL             A AR G +AP +
Sbjct:    63 KAIRGHLEN--NPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE 120

Query:   124 VVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGI 183
             V VP  NTGL P +TSFFQ L I TKI++GT+EI++ V+LI+ GDKVG+SEA LL  L I
Sbjct:   121 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 180

Query:   184 RPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHM 243
              PFS+GL++Q V++NGS+Y+PEVLD++E+ L  +F   V  V ++ L I YPT+A+ PH 
Sbjct:   181 SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 240

Query:   244 FVNAYKNVVAVALATEYSFPQADKVKEYLA 273
              +N YK V+A+++ T+Y+FP A+KVK +LA
Sbjct:   241 IINGYKRVLALSVETDYTFPLAEKVKAFLA 270

GO:0005840 "ribosome" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0006414 "translational elongation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q42112	RLA02_ARATH	No assigned EC number	0.8745	0.8522	0.8468	yes	no
P05388	RLA0_HUMAN	No assigned EC number	0.5148	0.8427	0.8454	yes	no
O04204	RLA01_ARATH	No assigned EC number	0.8713	0.8553	0.8580	no	no
Q95140	RLA0_BOVIN	No assigned EC number	0.5148	0.8427	0.8427	yes	no
Q29214	RLA0_PIG	No assigned EC number	0.5111	0.8427	0.8427	yes	no
P22685	RLA0_DICDI	No assigned EC number	0.4427	0.8081	0.8426	yes	no
O24573	RLA0_MAIZE	No assigned EC number	0.8051	0.8553	0.8526	N/A	no
Q8SRJ7	RLA0_ENCCU	No assigned EC number	0.3538	0.8018	0.8793	yes	no
P50345	RLA0_LUPLU	No assigned EC number	0.8308	0.8553	0.8447	N/A	no
P50346	RLA0_SOYBN	No assigned EC number	0.8823	0.8553	0.85	yes	no
O74864	RLA0_SCHPO	No assigned EC number	0.4792	0.8270	0.8429	yes	no
P29764	RLA0_CHERU	No assigned EC number	0.8057	0.7610	0.7538	N/A	no
P47826	RLA0_CHICK	No assigned EC number	0.5333	0.8427	0.8481	yes	no
P19889	RLA0_DROME	4, ., 2, ., 9, 9, ., 1, 8	0.5129	0.8459	0.8485	yes	no
Q9C3Z6	RLA0_PODAS	No assigned EC number	0.4589	0.8364	0.8471	yes	no
Q90YX1	RLA0_ICTPU	No assigned EC number	0.5444	0.8427	0.8454	N/A	no
Q93572	RLA0_CAEEL	No assigned EC number	0.4705	0.8490	0.8653	yes	no
P14869	RLA0_MOUSE	No assigned EC number	0.5111	0.8427	0.8454	yes	no
P57691	RLA03_ARATH	No assigned EC number	0.8634	0.8522	0.8390	yes	no
Q9U3U0	RLA0_CERCA	No assigned EC number	0.5166	0.8459	0.8485	N/A	no
P19945	RLA0_RAT	No assigned EC number	0.5130	0.8396	0.8422	yes	no
Q9PV90	RLA0_DANRE	No assigned EC number	0.5311	0.8427	0.8401	yes	no
P05317	RLA0_YEAST	No assigned EC number	0.4653	0.8113	0.8269	yes	no
P41095	RLA0_ORYSJ	No assigned EC number	0.8051	0.8553	0.8526	yes	no
Q9DG68	RLA0_RANSY	No assigned EC number	0.5407	0.8427	0.8507	N/A	no
P39097	RLA0_LEIIN	No assigned EC number	0.3701	0.8584	0.8452	yes	no
Q8NHW5	RLA0L_HUMAN	No assigned EC number	0.5074	0.8427	0.8454	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	318
PTZ00135	310	PTZ00135, PTZ00135, 60S acidic ribosomal protein P	1e-132
cd05795	175	cd05795, Ribosomal_P0_L10e, Ribosomal protein L10	4e-85
PTZ00240	323	PTZ00240, PTZ00240, 60S ribosomal protein P0; Prov	3e-73
PRK04019	330	PRK04019, rplP0, acidic ribosomal protein P0; Vali	2e-50
cd00379	155	cd00379, Ribosomal_L10_P0, Ribosomal protein L10 f	9e-26
pfam00466	100	pfam00466, Ribosomal_L10, Ribosomal protein L10	4e-22
COG0244	175	COG0244, RplJ, Ribosomal protein L10 [Translation,	1e-21
cd05796	163	cd05796, Ribosomal_P0_like, Ribosomal protein L10	1e-18
pfam00428	88	pfam00428, Ribosomal_60s, 60s Acidic ribosomal pro	4e-07
cd05797	157	cd05797, Ribosomal_L10, Ribosomal protein L10 fami	2e-05

>gnl|CDD|240285 PTZ00135, PTZ00135, 60S acidic ribosomal protein P0; Provisional

 Score =  377 bits (969), Expect = e-132
 Identities = 143/270 (52%), Positives = 196/270 (72%), Gaps = 2/270 (0%)

Query: 4   KASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMK 63
           K  K  KK AY  KL +LLE+Y +IL+ + DNVGS Q+Q+IRR LRG + +LMGKNT+++
Sbjct: 3   KPEKKAKKKAYFEKLYELLEKYKKILIVSVDNVGSKQMQDIRRSLRGKAELLMGKNTLIR 62

Query: 64  RTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLVAPID 123
           + ++   E+        L+P ++GNVG +FTK DL EVK  + + KV APAR G++APID
Sbjct: 63  KALKQRLEELPELE--KLLPHVKGNVGFVFTKDDLFEVKPVILENKVPAPARAGVIAPID 120

Query: 124 VVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGI 183
           VV+P G TG+DPSQTSFFQ L I TKI KG +EI   V LI++G KVG+S+A LL KL I
Sbjct: 121 VVIPAGPTGMDPSQTSFFQALGIATKIVKGQIEITNEVHLIKEGQKVGASQAVLLQKLNI 180

Query: 184 RPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHM 243
           +PFSYGL V S+Y+NGS+Y  +VLD++++D+V KF   V  V A++LA  YPT A+APH 
Sbjct: 181 KPFSYGLEVLSIYDNGSIYDAKVLDITDEDIVAKFQEGVQNVAAISLAAGYPTEASAPHS 240

Query: 244 FVNAYKNVVAVALATEYSFPQADKVKEYLA 273
            +NA+KN+ A+ L + ++FP A+K+KE LA
Sbjct: 241 ILNAFKNLAAIGLESGFTFPLAEKIKEALA 270

Length = 310

>gnl|CDD|240221 cd05795, Ribosomal_P0_L10e, Ribosomal protein L10 family, P0 and L10e subfamily; composed of eukaryotic 60S ribosomal protein P0 and the archaeal P0 homolog, L10e

 Score =  253 bits (648), Expect = 4e-85
 Identities = 94/177 (53%), Positives = 124/177 (70%), Gaps = 2/177 (1%)

Query: 9   EKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRM 68
           E K  Y  KL +LL+ Y ++L+  ADNVGS QLQ IRR LRG + +LMGKNT+++R +R 
Sbjct: 1   EWKKEYVEKLTELLKSYPKVLIVDADNVGSKQLQKIRRSLRGKAEILMGKNTLIRRALRN 60

Query: 69  HAEKTGNTAFLNLIPLLQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLVAPIDVVVPP 128
             +   N     L+P L+GNVG IFT GD  E+++ + + KV APA+ G +AP DVVVP 
Sbjct: 61  LGD--ENPELEKLLPYLKGNVGFIFTNGDPFEIRKILEENKVPAPAKPGAIAPCDVVVPA 118

Query: 129 GNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRP 185
           G TG+ P  TSFFQ L IPTKI KG +EII+ V +++KG+KVG+SEA LL KL I+P
Sbjct: 119 GPTGMPPGPTSFFQALGIPTKIEKGKIEIISDVVVVKKGEKVGASEATLLNKLNIKP 175

P0 or L10e forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. The stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-interacting protein (WIP). These eukaryotic and archaeal P0 sequences have an additional C-terminal domain homologous with acidic proteins P1 and P2. Length = 175

>gnl|CDD|140267 PTZ00240, PTZ00240, 60S ribosomal protein P0; Provisional

 Score =  228 bits (583), Expect = 3e-73
 Identities = 111/269 (41%), Positives = 165/269 (61%), Gaps = 9/269 (3%)

Query: 6   SKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRT 65
           S    K  Y+ +L   L +Y+ +L    DNV S Q+ ++RR LRG +  +MGK T+  + 
Sbjct: 3   SITTAKREYEERLVDCLTKYSCVLFVGMDNVRSQQVHDVRRALRGKAEFVMGKKTLQAKI 62

Query: 66  IRMHAEKTGNTAFLNLI-------PLLQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGL 118
           +   A+    +A   L         LL GN GLIFT  +++E+   +  ++V APARVG 
Sbjct: 63  VEKRAQAKKASAEAKLFNDQCEEKNLLSGNTGLIFTNNEVQEITSVLDSHRVKAPARVGA 122

Query: 119 VAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALL 178
           +AP DV+VP G+TG++P+QTSFFQ LNI TKI KG VEI+T  +++  GDKV +S A LL
Sbjct: 123 IAPCDVIVPAGSTGMEPTQTSFFQALNIATKIAKGMVEIVTEKKVLSVGDKVDNSTATLL 182

Query: 179 AKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKF-ASSVSMVTALALAISYPTL 237
            KL I PF Y + V SV++ G +++ E L ++ +D+VEK     +S V A++L    PT 
Sbjct: 183 QKLNISPFYYQVEVLSVWDRGVLFTREDLSMT-EDVVEKMLMEGLSNVAAMSLGAGIPTA 241

Query: 238 AAAPHMFVNAYKNVVAVALATEYSFPQAD 266
           A    M V+A+KN++AV++AT Y F + +
Sbjct: 242 ATIGPMLVDAFKNLLAVSVATSYEFEEHN 270

Length = 323

>gnl|CDD|179712 PRK04019, rplP0, acidic ribosomal protein P0; Validated

 Score =  170 bits (432), Expect = 2e-50
 Identities = 85/267 (31%), Positives = 135/267 (50%), Gaps = 7/267 (2%)

Query: 8   AEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIR 67
            E K     +L +L++ Y  + +   + + + QLQ IRR LRG + + + KNT++KR + 
Sbjct: 5   PEWKKEEVEELKELIKSYPVVGIVDLEGIPARQLQEIRRKLRGKAELKVSKNTLIKRAL- 63

Query: 68  MHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLVAPIDVVVP 127
              E+ G      L   L+G V LIFT  +  ++ + + K K  APA+ G +AP D+VVP
Sbjct: 64  ---EEAGEEDLEKLEDYLEGQVALIFTNMNPFKLYKLLEKSKTPAPAKPGDIAPEDIVVP 120

Query: 128 PGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPF 186
            G TG  P    S  Q L IP +I KG + I     + + G+ +    A +L KLGI+P 
Sbjct: 121 AGPTGFPPGPILSELQKLGIPARIQKGKIVIKKDTVVAKAGEVISPELANVLQKLGIKPI 180

Query: 187 SYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVN 246
             GL +++ YE+G +Y+PEVL + E+        +      LA+  +YPT      +   
Sbjct: 181 EVGLDLKAAYEDGVIYTPEVLAIDEEKYRSDIQEAAQNAFNLAVNAAYPTPETLETLIQK 240

Query: 247 AYKNVVAVALATEYSFPQADKVKEYLA 273
           A++   A ALA E      +   + L+
Sbjct: 241 AFRE--AKALAVEAGIVTPETADDILS 265

Length = 330

>gnl|CDD|238222 cd00379, Ribosomal_L10_P0, Ribosomal protein L10 family; composed of the large subunit ribosomal protein called L10 in bacteria, P0 in eukaryotes, and L10e in archaea, as well as uncharacterized P0-like eukaryotic proteins

 Score =   99 bits (250), Expect = 9e-26
 Identities = 45/162 (27%), Positives = 69/162 (42%), Gaps = 15/162 (9%)

Query: 9   EKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVL-MGKNTMMKRTIR 67
           EKK     +L +LL++Y  ++V     +   QL  +R+ LR     L +GKNT+M+R + 
Sbjct: 1   EKKEELVEELKELLKKYKSVVVVDYRGLTVAQLTELRKELRESGAKLKVGKNTLMRRAL- 59

Query: 68  MHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLKEVKEEVAKYKVG---APARVGLVAPIDV 124
                   T F  L PLL+G   L FT  D  EV + +  +        A+ G+VA   V
Sbjct: 60  ------KGTGFEELKPLLKGPTALAFTNEDPVEVAKVLKDFAKENKKLFAKGGVVA-GKV 112

Query: 125 VVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRK 166
           + P G T L    +   +   +   I      I     L+  
Sbjct: 113 LDPAGVTALAKLPS---REELLAMLIGLLKAPIAKLARLLNA 151

In all three kingdoms, L10 forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. The N-terminal domain (NTD) of L10 interacts with L11 protein and forms the base of the L7/L12 stalk, while the extended C-terminal helix binds to two or three dimers of the NTD of L7/L12 (L7 and L12 are identical except for an acetylated N-terminus). The L7/L12 stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-interacting protein (WIP). Some eukaryotic P0 sequences have an additional C-terminal domain homologous with acidic proteins P1 and P2. Length = 155

>gnl|CDD|215933 pfam00466, Ribosomal_L10, Ribosomal protein L10

 Score = 88.7 bits (221), Expect = 4e-22
 Identities = 33/103 (32%), Positives = 52/103 (50%), Gaps = 7/103 (6%)

Query: 7   KAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRG-DSVVLMGKNTMMKRT 65
             EKK    A+L +LL+EY  ++V     +   QL  +R+ LR   + + +GKNT+M+R 
Sbjct: 2   TREKKEEIVAELKELLKEYKSVVVVDYRGLTVAQLTELRKKLREAGAELKVGKNTLMRRA 61

Query: 66  IRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLKEVKEEVAKY 108
           +    E+        L  LL+G   LIFT  D   V + + K+
Sbjct: 62  LEGTGEEEA------LSELLKGPTALIFTNEDPVAVAKVLKKF 98

Length = 100

>gnl|CDD|223322 COG0244, RplJ, Ribosomal protein L10 [Translation, ribosomal structure and biogenesis]

 Score = 89.6 bits (223), Expect = 1e-21
 Identities = 43/194 (22%), Positives = 71/194 (36%), Gaps = 25/194 (12%)

Query: 9   EKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVL-MGKNTMMKRTIR 67
           E K    A+L +L++E   +++     +   QL  +R+ LR     L + KNT+++R + 
Sbjct: 6   EWKKELVAELKELIKESPSVVIVDYRGLTVAQLTELRKKLREAGAKLKVVKNTLLRRALE 65

Query: 68  MHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLVAPIDVVVP 127
                        L  LL+G   + F+  D     + +  +   A       API   VP
Sbjct: 66  -------EAGLEGLDDLLKGPTAIAFSNEDPVAAAKLLKDFAKEAGD----KAPIKGGVP 114

Query: 128 PGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFS 187
            G             VL     I    +     + ++  G     +   LL  L   P  
Sbjct: 115 EGK------------VLGAAEVIALAKLPSKEELVVMLLGVLQAPA-TKLLRALKAVPDK 161

Query: 188 YGLVVQSVYENGSV 201
            GL + + YE G V
Sbjct: 162 VGLKLLAAYEKGVV 175

Length = 175

>gnl|CDD|240222 cd05796, Ribosomal_P0_like, Ribosomal protein L10 family, P0-like protein subfamily; composed of uncharacterized eukaryotic proteins with similarity to the 60S ribosomal protein P0, including the Saccharomyces cerevisiae protein called mRNA turnover protein 4 (MRT4)

 Score = 81.1 bits (201), Expect = 1e-18
 Identities = 46/165 (27%), Positives = 76/165 (46%), Gaps = 6/165 (3%)

Query: 9   EKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRM 68
           E K      + + +++Y  I V + DN+ +N+L++IR+  + DS    GKN +M+  +  
Sbjct: 1   ELKQKLVENIREAVDKYKYIYVFSVDNMRNNKLKDIRQEWK-DSRFFFGKNKVMQVALGR 59

Query: 69  HAEKTGNTAFLNLIPLLQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLVAPIDVVVPP 128
             E         L   L+G VGL+FT    +EV E    Y     AR G +A   V +P 
Sbjct: 60  TPEDEYKPNLHKLSKYLKGQVGLLFTNEPPEEVIEYFDSYSEPDFARAGSIATETVTLPE 119

Query: 129 GNTGLDP---SQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKV 170
           G   L+    S     + L +PTK+ KG + +     +  +G  +
Sbjct: 120 GP--LEQFPHSMEPQLRKLGLPTKLKKGVITLEADYVVCEEGKVL 162

MRT4 may be involved in mRNA decay. P0 forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. It occupies the L7/L12 stalk of the ribosome. The stalk is known to contain the binding site for elongation factors EF-G and EF-Tu; however, there is disagreement as to whether or not P0 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, P0 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-interacting protein (WIP). Some eukaryotic P0 sequences have an additional C-terminal domain homologous with acidic proteins P1 and P2. Length = 163

>gnl|CDD|215914 pfam00428, Ribosomal_60s, 60s Acidic ribosomal protein

 Score = 46.8 bits (112), Expect = 4e-07
 Identities = 13/40 (32%), Positives = 17/40 (42%)

Query: 234 YPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLA 273
            PT A   H+   A K V A  L     F +   +KE +A
Sbjct: 1   EPTAADIKHVLKAAGKEVEAERLELLVKFLEGKNIKELIA 40

This family includes archaebacterial L12, eukaryotic P0, P1 and P2. Length = 88

>gnl|CDD|240223 cd05797, Ribosomal_L10, Ribosomal protein L10 family, L10 subfamily; composed of bacterial 50S ribosomal protein and eukaryotic mitochondrial 39S ribosomal protein, L10

 Score = 43.6 bits (104), Expect = 2e-05
 Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 8/102 (7%)

Query: 9   EKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLM-GKNTMMKRTIR 67
           EKK    A+L + L+E   ++VA    +   QL  +R+ LR   V L   KNT+ KR + 
Sbjct: 3   EKKEEIVAELKEKLKEAKSVVVADYRGLTVAQLTELRKELREAGVKLKVVKNTLAKRALE 62

Query: 68  MHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLKEVKEEVAKYK 109
                   T F +L  LL+G   + F++ D     + +  + 
Sbjct: 63  -------GTGFEDLDDLLKGPTAIAFSEEDPVAAAKVLKDFA 97

L10 occupies the L7/L12 stalk of the ribosome. The N-terminal domain (NTD) of L10 interacts with L11 protein and forms the base of the L7/L12 stalk, while the extended C-terminal helix binds to two or three dimers of the NTD of L7/L12 (L7 and L12 are identical except for an acetylated N-terminus). The L7/L12 stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-interacting protein (WIP). These bacteria and eukaryotic sequences have no additional C-terminal domain, present in other eukaryotic and archaeal orthologs. Length = 157

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	318
PTZ00240	323	60S ribosomal protein P0; Provisional	100.0
PTZ00135	310	60S acidic ribosomal protein P0; Provisional	100.0
PRK04019	330	rplP0 acidic ribosomal protein P0; Validated	100.0
KOG0815	245	consensus 60S acidic ribosomal protein P0 [Transla	100.0
cd05795	175	Ribosomal_P0_L10e Ribosomal protein L10 family, P0	100.0
cd05796	163	Ribosomal_P0_like Ribosomal protein L10 family, P0	100.0
KOG0816	223	consensus Protein involved in mRNA turnover [RNA p	100.0
COG0244	175	RplJ Ribosomal protein L10 [Translation, ribosomal	99.97
cd00379	155	Ribosomal_L10_P0 Ribosomal protein L10 family; com	99.9
PF00466	100	Ribosomal_L10: Ribosomal protein L10; InterPro: IP	99.87
PRK00099	172	rplJ 50S ribosomal protein L10; Reviewed	99.83
cd05797	157	Ribosomal_L10 Ribosomal protein L10 family, L10 su	99.83
PRK04019	330	rplP0 acidic ribosomal protein P0; Validated	99.82
PTZ00240	323	60S ribosomal protein P0; Provisional	98.7
PTZ00135	310	60S acidic ribosomal protein P0; Provisional	98.39
KOG4241	245	consensus Mitochondrial ribosomal protein L10 [Tra	96.86
cd05795	175	Ribosomal_P0_L10e Ribosomal protein L10 family, P0	93.22
PF00428	88	Ribosomal_60s: 60s Acidic ribosomal protein; Inter	88.92
PF07697	222	7TMR-HDED: 7TM-HD extracellular; InterPro: IPR0116	83.74

>PTZ00240 60S ribosomal protein P0; Provisional

Probab=100.00  E-value=2.6e-82  Score=605.34  Aligned_cols=272  Identities=40%  Similarity=0.639  Sum_probs=264.3

Q ss_pred             ccHHHHHHHHHHHHHHHhccCeEEEEEeCCCCcHHHHHHHHHccCCcEEEEEehHHHHHHHhhchhhcCCcccccc----
Q 021064            6 SKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNL----   81 (318)
Q Consensus         6 k~~e~K~~~v~el~e~l~~y~~v~iv~~~~v~s~qlq~IR~~Lr~~a~~~vgKNtL~r~AL~~~~~~~~~~~l~~L----   81 (318)
                      +.++||.+++++|++++++|++++||+++|++++|||+||+.||++++++|||||||++||++..++++.+++++|    
T Consensus         3 ~~~~~K~~~v~~l~~~l~~y~~v~Iv~~~nv~s~qlq~IR~~lrg~a~~~~GKNtlm~~AL~~~~~~~~~~~~~~ll~~~   82 (323)
T PTZ00240          3 SITTAKREYEERLVDCLTKYSCVLFVGMDNVRSQQVHDVRRALRGKAEFVMGKKTLQAKIVEKRAQAKKASAEAKLFNDQ   82 (323)
T ss_pred             chhHHHHHHHHHHHHHHHhCCEEEEEEecCCCcHHHHHHHHHhhCCcEEEEecHHHHHHHHhhccccccchhHHHHhhhh
Confidence            5678999999999999999999999999999999999999999999999999999999999998877666567776    


Q ss_pred             ---cccccCceEEEEecCChHHHHHHHHhhccCccccCCCCCCceEEECCCCCCCCCCchhhhhhcCcceEEecceEEEe
Q 021064           82 ---IPLLQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEII  158 (318)
Q Consensus        82 ---~~~L~G~~gLiFTn~dp~ev~k~l~~~k~~~~Ak~G~iA~~dVvIp~G~t~~~P~~~s~fqkLgIptki~kG~I~I~  158 (318)
                         .++++||+||+|||+||++++++|+++++++|||+|+|||+||+||+|||+|+|+++++||+|||||+|++|+|+|.
T Consensus        83 ~~~~~~l~GnvgliFTn~~p~ev~~~l~~~k~~a~AraG~IAp~dVvvpaG~T~~~P~~~s~fq~LGIpTkI~kGkIeI~  162 (323)
T PTZ00240         83 CEEKNLLSGNTGLIFTNNEVQEITSVLDSHRVKAPARVGAIAPCDVIVPAGSTGMEPTQTSFFQALNIATKIAKGMVEIV  162 (323)
T ss_pred             ccccccccCCEEEEEeCCCHHHHHHHHHHcCCcccccCCCCCCceEEECCCCCCCCCcchHHHHHcCCCeEecCcEEEEe
Confidence               59999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCeEEeecCcccChhHHHHHHHhCCCccccccceeeeeccCcccCCCcccCChHHHHHHHHHHHHHHHHHhhhcCCCCcc
Q 021064          159 TPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLA  238 (318)
Q Consensus       159 ~d~~v~k~Ge~v~~~qA~LL~~L~I~p~~~~l~l~~~~~~g~~~~~~~L~i~~e~~~~~~~~a~~~a~~ls~~~~ypt~~  238 (318)
                      +|++||++||+||++||+||++|||+|++|+++++++||+|.+|++++|+||+|+|.++|++|++++++||+++||||++
T Consensus       163 ~d~~v~k~Ge~V~~~~A~LL~~L~IkP~~~gl~l~~vyd~g~i~~~~vL~i~~e~~~~~~~~a~~~~~~lsl~~~~pt~~  242 (323)
T PTZ00240        163 TEKKVLSVGDKVDNSTATLLQKLNISPFYYQVEVLSVWDRGVLFTREDLSMTEDVVEKMLMEGLSNVAAMSLGAGIPTAA  242 (323)
T ss_pred             cCeEEecCCCCcCHHHHHHHHHcCCCeEEEEEEEEEEEeCCeecCHHHcCCCHHHHHHHHHHHHHHHHHHHHhhCCCcHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhHHHHHHHHHHhhhhhcCccCCChHhHHHHhhcCCC
Q 021064          239 AAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLAVCIS  277 (318)
Q Consensus       239 s~p~~i~~a~~~a~ala~~~~~~~~~~~~~~~~l~~~~~  277 (318)
                      |+||+|.|||++++|||++++|+||+++.++.++++|++
T Consensus       243 si~~~i~~a~~~~~alav~~~~~~~~~~~~~~~~A~~~~  281 (323)
T PTZ00240        243 TIGPMLVDAFKNLLAVSVATSYEFEEHNGKELREAALEG  281 (323)
T ss_pred             HHHHHHHHHHHHHHHHhhhcCcCChhhHHHHHhhhCHHh
Confidence            999999999999999999999999999999999998863

>PTZ00135 60S acidic ribosomal protein P0; Provisional

Probab=100.00  E-value=9.2e-81  Score=594.30  Aligned_cols=274  Identities=53%  Similarity=0.858  Sum_probs=267.5

Q ss_pred             CCcccccHHHHHHHHHHHHHHHhccCeEEEEEeCCCCcHHHHHHHHHccCCcEEEEEehHHHHHHHhhchhhcCCccccc
Q 021064            1 MVVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLN   80 (318)
Q Consensus         1 m~~~kk~~e~K~~~v~el~e~l~~y~~v~iv~~~~v~s~qlq~IR~~Lr~~a~~~vgKNtL~r~AL~~~~~~~~~~~l~~   80 (318)
                      |+ ++.+++||++++++|++++++|+.++|++++||+++|||+||+.||++++++|||||||++||+++.++  .+++++
T Consensus         1 ~~-~~~~re~K~~~v~~l~e~l~~y~~v~vv~~~nv~s~ql~~iR~~LR~~a~~~vgKNTL~r~AL~~~~~~--~~~l~~   77 (310)
T PTZ00135          1 MA-KPEKKAKKKAYFEKLYELLEKYKKILIVSVDNVGSKQMQDIRRSLRGKAELLMGKNTLIRKALKQRLEE--LPELEK   77 (310)
T ss_pred             CC-cchhHHHHHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHhcCCEEEEEehHHHHHHHhhCccc--ccChHH
Confidence            56 788999999999999999999999999999999999999999999988999999999999999998655  345999


Q ss_pred             ccccccCceEEEEecCChHHHHHHHHhhccCccccCCCCCCceEEECCCCCCCCCCchhhhhhcCcceEEecceEEEecC
Q 021064           81 LIPLLQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITP  160 (318)
Q Consensus        81 L~~~L~G~~gLiFTn~dp~ev~k~l~~~k~~~~Ak~G~iA~~dVvIp~G~t~~~P~~~s~fqkLgIptki~kG~I~I~~d  160 (318)
                      |.++|+||+||+|||+||++++++|.+|++++|||+|.|||+||+||+|||+|+|+++++||+|||||+|++|+|+|.+|
T Consensus        78 L~~~LkG~~gliFTn~dp~ev~k~l~~~k~~~~AKaG~iAp~dv~ip~G~t~~~P~~~~~fq~LgipTkI~kG~I~I~~d  157 (310)
T PTZ00135         78 LLPHVKGNVGFVFTKDDLFEVKPVILENKVPAPARAGVIAPIDVVIPAGPTGMDPSQTSFFQALGIATKIVKGQIEITNE  157 (310)
T ss_pred             HHhhccCCEEEEEECCCHHHHHHHHHHcCCccccccCCCCCceEEEcCCCCCCCcchhhHHHHcCCceEecCCeEEEecC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEeecCcccChhHHHHHHHhCCCccccccceeeeeccCcccCCCcccCChHHHHHHHHHHHHHHHHHhhhcCCCCccch
Q 021064          161 VELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAA  240 (318)
Q Consensus       161 ~~v~k~Ge~v~~~qA~LL~~L~I~p~~~~l~l~~~~~~g~~~~~~~L~i~~e~~~~~~~~a~~~a~~ls~~~~ypt~~s~  240 (318)
                      ++||++||+||++||+||++|||+|++|++++.++||+|.+|++++|+||+|+|.++|++|++++.+||+++||||++++
T Consensus       158 ~~v~k~Ge~v~~~~A~LL~~L~I~p~~~~l~~~~~yd~g~~~~~~vL~i~~e~~~~~~~~~~~~i~als~aag~pt~~s~  237 (310)
T PTZ00135        158 VHLIKEGQKVGASQAVLLQKLNIKPFSYGLEVLSIYDNGSIYDAKVLDITDEDIVAKFQEGVQNVAAISLAAGYPTEASA  237 (310)
T ss_pred             eEEecCCCCcCHHHHHHHHHcCCCeEEEEEEEEEEEECCeEeCHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCCCcHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHhhhhhcCccCCChHhHHHHhhcCCC
Q 021064          241 PHMFVNAYKNVVAVALATEYSFPQADKVKEYLAVCIS  277 (318)
Q Consensus       241 p~~i~~a~~~a~ala~~~~~~~~~~~~~~~~l~~~~~  277 (318)
                      ||+|+|||++++|+|++++|+||+++++++++++|++
T Consensus       238 p~~ia~a~k~~~a~a~~~~~~~~~~~~~~~~~a~~~~  274 (310)
T PTZ00135        238 PHSILNAFKNLAAIGLESGFTFPLAEKIKEALANPSA  274 (310)
T ss_pred             HHHHHHHHHHHHHHHhhcCCCChhhHHHHHhhcCchh
Confidence            9999999999999999999999999999999999984

>PRK04019 rplP0 acidic ribosomal protein P0; Validated

Probab=100.00  E-value=2.4e-69  Score=520.62  Aligned_cols=264  Identities=31%  Similarity=0.505  Sum_probs=255.5

Q ss_pred             ccHHHHHHHHHHHHHHHhccCeEEEEEeCCCCcHHHHHHHHHccCCcEEEEEehHHHHHHHhhchhhcCCcccccccccc
Q 021064            6 SKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLL   85 (318)
Q Consensus         6 k~~e~K~~~v~el~e~l~~y~~v~iv~~~~v~s~qlq~IR~~Lr~~a~~~vgKNtL~r~AL~~~~~~~~~~~l~~L~~~L   85 (318)
                      +-++||+++|++|+++|++|++++|++|+|++++|+|+||+.||+.++|+|+|||||++||+++.+    +++++|.++|
T Consensus         3 ~~~e~K~~~v~el~~~l~~~~~v~iv~~~gl~~~ql~~lR~~lr~~~~~~v~KNtL~~~Al~~~~~----~~~~~L~~~l   78 (330)
T PRK04019          3 HVPEWKKEEVEELKELIKSYPVVGIVDLEGIPARQLQEIRRKLRGKAELKVSKNTLIKRALEEAGE----EDLEKLEDYL   78 (330)
T ss_pred             chHHHHHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHHcCCEEEEEehHHHHHHHHhcCc----ccHHHHHhhc
Confidence            458999999999999999999999999999999999999999998899999999999999998753    3489999999


Q ss_pred             cCceEEEEecCChHHHHHHHHhhccCccccCCCCCCceEEECCCCCCCCCCch-hhhhhcCcceEEecceEEEecCeEEe
Q 021064           86 QGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDPSQT-SFFQVLNIPTKINKGTVEIITPVELI  164 (318)
Q Consensus        86 ~G~~gLiFTn~dp~ev~k~l~~~k~~~~Ak~G~iA~~dVvIp~G~t~~~P~~~-s~fqkLgIptki~kG~I~I~~d~~v~  164 (318)
                      +|++||+|||+||++++++|.+|++++|||+|+|||+||+||+|||++.|+++ ++||+|||||+|++|+|+|.+|++||
T Consensus        79 ~G~~alift~~dp~~v~k~l~~~~~~~~ak~G~iA~~divip~G~t~~~P~~~~~~l~~lgipt~i~~G~I~i~~~~~v~  158 (330)
T PRK04019         79 EGQVALIFTNMNPFKLYKLLEKSKTPAPAKPGDIAPEDIVVPAGPTGFPPGPILSELQKLGIPARIQKGKIVIKKDTVVA  158 (330)
T ss_pred             cCCEEEEEECCCHHHHHHHHHHcCCcccCCCCCCCCCeEEEcCCCCCCCCcccHHHHHHcCCCeEecCCEEEEecCeEEe
Confidence            99999999999999999999999999999999999999999999999999995 99999999999999999999999999


Q ss_pred             ecCcccChhHHHHHHHhCCCccccccceeeeeccCcccCCCcccCChHHHHHHHHHHHHHHHHHhhhcCCCCccchhhHH
Q 021064          165 RKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMF  244 (318)
Q Consensus       165 k~Ge~v~~~qA~LL~~L~I~p~~~~l~l~~~~~~g~~~~~~~L~i~~e~~~~~~~~a~~~a~~ls~~~~ypt~~s~p~~i  244 (318)
                      ++|++||++||++|++|||+|++|++++.++|++|.+|++++|+||+++|..+|++|++++++||++++|||++++||+|
T Consensus       159 ~~G~~v~~~~a~lL~~LgI~p~~~~~~i~a~~~~G~~~~~~~l~i~~e~~~~~i~~A~~~a~~Ls~~~~~pt~~tl~~~i  238 (330)
T PRK04019        159 KAGEVISPELANVLQKLGIKPIEVGLDLKAAYEDGVIYTPEVLAIDEEKYRSDIQEAAQNAFNLAVNAAYPTPETLETLI  238 (330)
T ss_pred             cCCCCcCHHHHHHHHHcCCCHHHhhhHHHHHHhcCCccCHHHccCCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhhcCccCCChHhHHHHhhcC
Q 021064          245 VNAYKNVVAVALATEYSFPQADKVKEYLAVC  275 (318)
Q Consensus       245 ~~a~~~a~ala~~~~~~~~~~~~~~~~l~~~  275 (318)
                      ++||++|++||++++|+++  +.++.+|+++
T Consensus       239 ~kA~~~a~aLa~~~~~~t~--e~~~~il~kA  267 (330)
T PRK04019        239 QKAFREAKALAVEAGIVTP--ETADDILSKA  267 (330)
T ss_pred             HHHHHHHHHHHHHcCCCCh--hhHHHHHHHH
Confidence            9999999999999999766  8888888776

>KOG0815 consensus 60S acidic ribosomal protein P0 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.8e-67  Score=470.67  Aligned_cols=245  Identities=64%  Similarity=1.014  Sum_probs=240.2

Q ss_pred             CCcccccHHHHHHHHHHHHHHHhccCeEEEEEeCCCCcHHHHHHHHHccCCcEEEEEehHHHHHHHhhchhhcCCccccc
Q 021064            1 MVVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLN   80 (318)
Q Consensus         1 m~~~kk~~e~K~~~v~el~e~l~~y~~v~iv~~~~v~s~qlq~IR~~Lr~~a~~~vgKNtL~r~AL~~~~~~~~~~~l~~   80 (318)
                      |+ +...++||..++.++++++++|+.++++..+|+.+.|||+||+.||+++++.|||||+||+|++...++.+.  ++.
T Consensus         1 m~-~~~~~e~k~~y~~K~~~L~~~y~~~~~v~~dnv~s~ql~~ir~~lrg~a~vlmgkntm~rrair~~~~~~~~--~~~   77 (245)
T KOG0815|consen    1 MV-RADKAEKKAVYFTKLRQLFEEYPKCFVVGADNVGSTQLQNIRKQLRGDAVVLMGKNTMMRRAIRGHLENNPA--LEK   77 (245)
T ss_pred             Cc-chhhhHHHHHHHHHHHHHHHhcCceEEEeecchhhHHHHHHHHHhcCceeeeechhHHHHHHHHhccCCcHH--HHh
Confidence            56 778899999999999999999999999999999999999999999999999999999999999999877666  999


Q ss_pred             ccccccCceEEEEecCChHHHHHHHHhhccCccccCCCCCCceEEECCCCCCCCCCchhhhhhcCcceEEecceEEEecC
Q 021064           81 LIPLLQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITP  160 (318)
Q Consensus        81 L~~~L~G~~gLiFTn~dp~ev~k~l~~~k~~~~Ak~G~iA~~dVvIp~G~t~~~P~~~s~fqkLgIptki~kG~I~I~~d  160 (318)
                      +.++++|++||+||++|..++.+.|.++++.+|||+|.|||+||+||+++||++|+++||||+|||||||.+|+|||.+|
T Consensus        78 llp~~~g~vgfvftk~~L~ei~~~i~~n~~~apar~GaiAp~dV~V~~~nTg~~P~ktsfFQaLgIpTKIsrGtiEIlsd  157 (245)
T KOG0815|consen   78 LLPVVKGNVGFVFTKGDLKEIRKEIIENKVGAPARVGAIAPIDVTVPAQNTGLGPEKTSFFQALGIPTKISRGTIEILSD  157 (245)
T ss_pred             hccceeeceeEEEEeccHHHHHHHHHhcccccccccCCcCCceEEeccccCCCCcchhhhhhhcCCceeeecceEEeccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEeecCcccChhHHHHHHHhCCCccccccceeeeeccCcccCCCcccCChHHHHHHHHHHHHHHHHHhhhcCCCCccch
Q 021064          161 VELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAA  240 (318)
Q Consensus       161 ~~v~k~Ge~v~~~qA~LL~~L~I~p~~~~l~l~~~~~~g~~~~~~~L~i~~e~~~~~~~~a~~~a~~ls~~~~ypt~~s~  240 (318)
                      +.++++||||+++||.||.+|||+||.|||.++++||||.+|+||+||||+|++.+.|.+|+++.+++|+.+||||.+++
T Consensus       158 V~lik~GDKVGaSEAtLLnmL~IsPFsyGLvv~qVyDnGsiy~pevLDiteE~l~~~f~~~vs~va~~sL~~~ypt~asv  237 (245)
T KOG0815|consen  158 VQLIKTGDKVGASEATLLNMLNISPFSYGLVVQQVYDNGSIYNPEVLDITEEDLFSKFLSGVSNVASVSLAAGYPTLASV  237 (245)
T ss_pred             ceeeccCCccChhHHHHHhhhCCCccccceEEEEEecCCcccChhhcCCcHHHHHHHHHHHHHHHHHHHHhcCCCccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHH
Q 021064          241 PHMFVNAY  248 (318)
Q Consensus       241 p~~i~~a~  248 (318)
                      ||.+.|||
T Consensus       238 ~h~~~n~~  245 (245)
T KOG0815|consen  238 PHSFINAY  245 (245)
T ss_pred             chhhhhcC
Confidence            99999985

>cd05795 Ribosomal_P0_L10e Ribosomal protein L10 family, P0 and L10e subfamily; composed of eukaryotic 60S ribosomal protein P0 and the archaeal P0 homolog, L10e

Probab=100.00  E-value=5.2e-56  Score=393.31  Aligned_cols=175  Identities=54%  Similarity=0.875  Sum_probs=169.7

Q ss_pred             HHHHHHHHHHHHHHhccCeEEEEEeCCCCcHHHHHHHHHccCCcEEEEEehHHHHHHHhhchhhcCCcccccccccccCc
Q 021064            9 EKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGN   88 (318)
Q Consensus         9 e~K~~~v~el~e~l~~y~~v~iv~~~~v~s~qlq~IR~~Lr~~a~~~vgKNtL~r~AL~~~~~~~~~~~l~~L~~~L~G~   88 (318)
                      |||+++|++|++++++|++++|++|+|++++|+++||+.||++++|+|||||||++||+++.+  ..++++.|.++|+|+
T Consensus         1 ~~K~~~v~el~e~l~~~~~v~v~~~~gl~~~ql~~lR~~lr~~~~~~v~KNtL~~~Al~~~~~--~~~~~~~L~~~l~G~   78 (175)
T cd05795           1 EWKKEYVEKLTELLKSYPKVLIVDADNVGSKQLQKIRRSLRGKAEILMGKNTLIRRALRNLGD--ENPELEKLLPYLKGN   78 (175)
T ss_pred             ChHHHHHHHHHHHHHhCCEEEEEEecCCChHHHHHHHHHhhCCCEEEEechHHHHHHHHhccc--ccccHHHHHHHhcCC
Confidence            689999999999999999999999999999999999999998899999999999999999863  334599999999999


Q ss_pred             eEEEEecCChHHHHHHHHhhccCccccCCCCCCceEEECCCCCCCCCCchhhhhhcCcceEEecceEEEecCeEEeecCc
Q 021064           89 VGLIFTKGDLKEVKEEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGD  168 (318)
Q Consensus        89 ~gLiFTn~dp~ev~k~l~~~k~~~~Ak~G~iA~~dVvIp~G~t~~~P~~~s~fqkLgIptki~kG~I~I~~d~~v~k~Ge  168 (318)
                      +||+|||+||++++++|++|++++|||+|+|||+||+||+|||+|+|+++++||+|||||+|++|+|+|.+|++||++||
T Consensus        79 ~~liFt~~dp~~v~k~l~~~~~~~~ar~G~iA~~dvvi~~G~t~~~p~~~~~~~~lgiptki~~G~i~i~~d~~v~k~G~  158 (175)
T cd05795          79 VGFIFTNGDPFEIRKILEENKVPAPAKPGAIAPCDVVVPAGPTGMPPGPTSFFQALGIPTKIEKGKIEIISDVVVVKKGE  158 (175)
T ss_pred             EEEEEECCCHHHHHHHHHHcCCcccccCCCccCceEEEcCCCcCCCCCchHHHHHcCCceEEecCEEEEecCeEEecCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccChhHHHHHHHhCCCc
Q 021064          169 KVGSSEAALLAKLGIRP  185 (318)
Q Consensus       169 ~v~~~qA~LL~~L~I~p  185 (318)
                      +||++||+||++|||+|
T Consensus       159 ~v~~~~A~lL~~l~i~P  175 (175)
T cd05795         159 KVGASEATLLNKLNIKP  175 (175)
T ss_pred             CcCHHHHHHHHHcCCCC
Confidence            99999999999999998

P0 or L10e forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. The stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-interacting protein (WIP). These eukaryotic and archaeal P0 sequences have an additional C-terminal domain homologous with acidic proteins P1 and P2.

>cd05796 Ribosomal_P0_like Ribosomal protein L10 family, P0-like protein subfamily; composed of uncharacterized eukaryotic proteins with similarity to the 60S ribosomal protein P0, including the Saccharomyces cerevisiae protein called mRNA turnover protein 4 (MRT4)

Probab=100.00  E-value=5.3e-50  Score=351.23  Aligned_cols=162  Identities=27%  Similarity=0.405  Sum_probs=156.1

Q ss_pred             HHHHHHHHHHHHHHhccCeEEEEEeCCCCcHHHHHHHHHccCCcEEEEEehHHHHHHHhhchhhcCCcccccccccccCc
Q 021064            9 EKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGN   88 (318)
Q Consensus         9 e~K~~~v~el~e~l~~y~~v~iv~~~~v~s~qlq~IR~~Lr~~a~~~vgKNtL~r~AL~~~~~~~~~~~l~~L~~~L~G~   88 (318)
                      +||.+++++|+++|++|++++|++++|++++|+++||+.||+. +|+|||||||++||+++.+++..++++.|.++|+|+
T Consensus         1 e~K~~~v~~l~e~l~~y~~v~iv~~~gl~~~ql~~iR~~lr~~-~~~v~KNtl~~~Al~~~~~~~~~~~~~~L~~~l~G~   79 (163)
T cd05796           1 ELKQKLVENIREAVDKYKYIYVFSVDNMRNNKLKDIRQEWKDS-RFFFGKNKVMQVALGRTPEDEYKPNLHKLSKYLKGQ   79 (163)
T ss_pred             ChHHHHHHHHHHHHHhCCEEEEEEecCCCHHHHHHHHHHhcCC-EEEEEchHHHHHHHhhCccccccccHHHHHHHhCCC
Confidence            5899999999999999999999999999999999999999986 999999999999999988777777899999999999


Q ss_pred             eEEEEecCChHHHHHHHHhhccCccccCCCCCCceEEECCCCCCCCCCc-hhhhhhcCcceEEecceEEEecCeEEeecC
Q 021064           89 VGLIFTKGDLKEVKEEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKG  167 (318)
Q Consensus        89 ~gLiFTn~dp~ev~k~l~~~k~~~~Ak~G~iA~~dVvIp~G~t~~~P~~-~s~fqkLgIptki~kG~I~I~~d~~v~k~G  167 (318)
                      +||+|||+||++++++|++|++++|||+|+|||+||+||+|||++.|++ .++||+|||||+|++|+|+|.+|++||++|
T Consensus        80 ~~lift~~dp~~v~k~l~~~~~~~~ar~G~iA~~dvvi~~G~~~~~p~~~~~~~~~lgiptki~~G~I~i~~d~~v~k~G  159 (163)
T cd05796          80 VGLLFTNEPPEEVIEYFDSYSEPDFARAGSIATETVTLPEGPLEQFPHSMEPQLRKLGLPTKLKKGVITLEADYVVCEEG  159 (163)
T ss_pred             EEEEEECCCHHHHHHHHHHcCCcccccCCCCCCceEEEeCCCCCCCCCCcchHHHHcCCCeEEeCCEEEEecCcEEECCC
Confidence            9999999999999999999999999999999999999999999988766 699999999999999999999999999999


Q ss_pred             cccC
Q 021064          168 DKVG  171 (318)
Q Consensus       168 e~v~  171 (318)
                      |+||
T Consensus       160 ~~v~  163 (163)
T cd05796         160 KVLT  163 (163)
T ss_pred             CCCc
Confidence            9986

MRT4 may be involved in mRNA decay. P0 forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. It occupies the L7/L12 stalk of the ribosome. The stalk is known to contain the binding site for elongation factors EF-G and EF-Tu; however, there is disagreement as to whether or not P0 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, P0 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WAS

>KOG0816 consensus Protein involved in mRNA turnover [RNA processing and modification]

Probab=100.00  E-value=4.9e-49  Score=348.13  Aligned_cols=196  Identities=28%  Similarity=0.431  Sum_probs=190.8

Q ss_pred             ccccHHHHHHHHHHHHHHHhccCeEEEEEeCCCCcHHHHHHHHHccCCcEEEEEehHHHHHHHhhchhhcCCcccccccc
Q 021064            4 KASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIP   83 (318)
Q Consensus         4 ~kk~~e~K~~~v~el~e~l~~y~~v~iv~~~~v~s~qlq~IR~~Lr~~a~~~vgKNtL~r~AL~~~~~~~~~~~l~~L~~   83 (318)
                      .||.+|+|+.+|++|++++++|+++||+++.|||+..+++||.+|+ +++|+||||++|.+||+++.++|+++++++++.
T Consensus        16 ~KKg~e~K~~i~~~ir~~vd~Y~~v~Vf~~~nMRn~~lk~iR~~~k-~sr~f~GknKVm~vaLG~~~~dE~~~~l~klsk   94 (223)
T KOG0816|consen   16 AKKGKEKKEAIVEEIREAVDKYPYVFVFEVPNMRNTTLKEIRQDFK-NSRFFFGKNKVMQVALGRSREDEYKENLYKLSK   94 (223)
T ss_pred             hhhhHHHHHHHHHHHHHHHhhCCeEEEEEcCCcchHHHHHHHHHhh-ccceecchhhHHHHHhcCCchhhHHHHHHHhhh
Confidence            4678999999999999999999999999999999999999999999 799999999999999999999999999999999


Q ss_pred             cccCceEEEEecCChHHHHHHHHhhccCccccCCCCCCceEEECCCCC-CCCCCchhhhhhcCcceEEecceEEEecCeE
Q 021064           84 LLQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLVAPIDVVVPPGNT-GLDPSQTSFFQVLNIPTKINKGTVEIITPVE  162 (318)
Q Consensus        84 ~L~G~~gLiFTn~dp~ev~k~l~~~k~~~~Ak~G~iA~~dVvIp~G~t-~~~P~~~s~fqkLgIptki~kG~I~I~~d~~  162 (318)
                      .++|.+||+|||.++.++..+|.+|...+|||+|++||++|+||+||. .++|++.+.+|+||+||++.+|+|++.+|++
T Consensus        95 ll~G~~GLlFTd~~keeV~e~f~sy~~~DyaR~g~vA~~Tv~ip~Gpl~~f~hsmEP~lRklglPt~lk~G~vtL~sdy~  174 (223)
T KOG0816|consen   95 LLKGSVGLLFTDMSKEEVIEWFRSYVEEDYARAGDVAPETVTIPEGPLEQFAHSMEPQLRKLGLPTKLKKGVVTLLSDYT  174 (223)
T ss_pred             hccCceEEEecCCCHHHHHHHHHHHHHHhhhccCCcCcceEeecCcchhhcccccchhhHhhcCceeecCCeEEEecCce
Confidence            999999999999999999999999999999999999999999999997 5889999999999999999999999999999


Q ss_pred             EeecCcccChhHHHHHHHhCCCccccccceeeeeccCc
Q 021064          163 LIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGS  200 (318)
Q Consensus       163 v~k~Ge~v~~~qA~LL~~L~I~p~~~~l~l~~~~~~g~  200 (318)
                      ||++||+++++||+||++||+++.+|++.+.++|+...
T Consensus       175 VCeEG~~Ld~rqA~ILKlfg~kma~Fkl~~~~~w~~s~  212 (223)
T KOG0816|consen  175 VCEEGDVLDPRQAKILKLFGKKMAKFKLAVKAYWSKSS  212 (223)
T ss_pred             eecCCcccCHHHHHHHHHHhHhhHhheEEEEEEEcCcc
Confidence            99999999999999999999999999999999999643

>COG0244 RplJ Ribosomal protein L10 [Translation, ribosomal structure and biogenesis]

Probab=99.97  E-value=1.5e-31  Score=237.06  Aligned_cols=171  Identities=25%  Similarity=0.320  Sum_probs=163.0

Q ss_pred             ccHHHHHHHHHHHHHHHhccCeEEEEEeCCCCcHHHHHHHHHccC-CcEEEEEehHHHHHHHhhchhhcCCccccccccc
Q 021064            6 SKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRG-DSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPL   84 (318)
Q Consensus         6 k~~e~K~~~v~el~e~l~~y~~v~iv~~~~v~s~qlq~IR~~Lr~-~a~~~vgKNtL~r~AL~~~~~~~~~~~l~~L~~~   84 (318)
                      ..++||.++|++++++|++|++++|+||+|+++.|+++||++||+ +++++|+||||+++||+++.       .+.|.++
T Consensus         3 ~~~e~K~~~v~el~e~~~~s~~~~i~dy~Gl~~~ql~~lR~~lr~~g~~lkV~KNtL~~rAl~~~~-------~e~l~~~   75 (175)
T COG0244           3 LAREWKKELVAELKELIKESPSVVIVDYRGLTVAQLTELRKKLREAGAKLKVVKNTLLRRALEEAG-------LEGLDDL   75 (175)
T ss_pred             ccHHHHHHHHHHHHHHHhhCCEEEEEEeCCCcHHHHHHHHHHHHhCCcEEEEEhhHHHHHHHHhcc-------hhhHHHh
Confidence            567999999999999999999999999999999999999999997 59999999999999999885       6679999


Q ss_pred             ccCceEEEEecCChHHHHHHHHhhccCccccCCCCCCceEEECCCCCCCCCCchhhhhhcCcceEEecceEEEecCeEEe
Q 021064           85 LQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI  164 (318)
Q Consensus        85 L~G~~gLiFTn~dp~ev~k~l~~~k~~~~Ak~G~iA~~dVvIp~G~t~~~P~~~s~fqkLgIptki~kG~I~I~~d~~v~  164 (318)
                      ++|++|++||++||++++|+|.+|..+.    |++++.++.+++|.            .|++|+.++.|+|.+.+|..+.
T Consensus        76 l~Gp~ai~fs~~dp~~~~K~~~~f~k~~----~~~~~~~~~~~eg~------------~l~~~~v~~~aklp~~~el~~~  139 (175)
T COG0244          76 LKGPTAIAFSNEDPVAAAKLLKDFAKEA----GDKAPIKGGVPEGK------------VLGAAEVIALAKLPSKEELVVM  139 (175)
T ss_pred             ccCCeEEEEecCCHHHHHHHHHHHhhhh----cccceEEEEEecCc------------ccCHHHHHHHhcCCcHHHHHHH
Confidence            9999999999999999999999887766    99999999999998            5799999999999999999999


Q ss_pred             ecCcccChhHHHHHHHhCCCccccccceeeeeccCc
Q 021064          165 RKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGS  200 (318)
Q Consensus       165 k~Ge~v~~~qA~LL~~L~I~p~~~~l~l~~~~~~g~  200 (318)
                      ..|+.+.|.. .++..|++.|.++++.+.++|++|.
T Consensus       140 l~g~~~ap~~-~~~~~L~a~~~~~~~~~~a~~~~g~  174 (175)
T COG0244         140 LLGVLQAPAT-KLLRALKAVPDKVGLKLLAAYEKGV  174 (175)
T ss_pred             HHHhhHhhHH-HHHHHHhccHHHHhhHHHHhhccCC
Confidence            9999999999 9999999999999999999999885

>cd00379 Ribosomal_L10_P0 Ribosomal protein L10 family; composed of the large subunit ribosomal protein called L10 in bacteria, P0 in eukaryotes, and L10e in archaea, as well as uncharacterized P0-like eukaryotic proteins

Probab=99.90  E-value=1.6e-24  Score=186.75  Aligned_cols=122  Identities=33%  Similarity=0.472  Sum_probs=115.3

Q ss_pred             HHHHHHHHHHHHHHhccCeEEEEEeCCCCcHHHHHHHHHccCC-cEEEEEehHHHHHHHhhchhhcCCcccccccccccC
Q 021064            9 EKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGD-SVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQG   87 (318)
Q Consensus         9 e~K~~~v~el~e~l~~y~~v~iv~~~~v~s~qlq~IR~~Lr~~-a~~~vgKNtL~r~AL~~~~~~~~~~~l~~L~~~L~G   87 (318)
                      ++|.++++++++++++|+.+++++|+|+++++++++|++||+. ++++|+|||||++||+++.       ++.+.++|+|
T Consensus         1 ~~K~~~v~~l~~~l~~~~~v~v~~~~~l~~~~~~~lR~~l~~~~~~~~v~KNtl~~~Al~~t~-------~~~~~~~l~G   73 (155)
T cd00379           1 EKKEELVEELKELLKKYKSVVVVDYRGLTVAQLTELRKELRESGAKLKVGKNTLMRRALKGTG-------FEELKPLLKG   73 (155)
T ss_pred             CchHHHHHHHHHHHHhCCEEEEEecCCCcHHHHHHHHHHHHHcCCEEEEEehHHHHHHHcCCC-------ccchhhhCcC
Confidence            5799999999999999999999999999999999999999975 8999999999999999985       6788899999


Q ss_pred             ceEEEEecCChHHHHHHHHhhccC---ccccCCCCCCceEEECCCCCCCCCCch
Q 021064           88 NVGLIFTKGDLKEVKEEVAKYKVG---APARVGLVAPIDVVVPPGNTGLDPSQT  138 (318)
Q Consensus        88 ~~gLiFTn~dp~ev~k~l~~~k~~---~~Ak~G~iA~~dVvIp~G~t~~~P~~~  138 (318)
                      ++|++||++||.++.++|.+++..   .++|+|.++ .+|+.|+|.+.+++.|.
T Consensus        74 ~~~~~f~~~~~~~~~k~~~~~~k~~~~~~~k~g~~~-~~v~~~~~~~~l~~lp~  126 (155)
T cd00379          74 PTALAFTNEDPVEVAKVLKDFAKENKKLFAKGGVVA-GKVLDPAGVTALAKLPS  126 (155)
T ss_pred             CEEEEEeCCChHHHHHHHHHHHHhCCCceEEEEEEc-CEecCHHHHHHHhcCCC
Confidence            999999999999999999999888   899999999 99999999998877773

In all three kingdoms, L10 forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. The N-terminal domain (NTD) of L10 interacts with L11 protein and forms the base of the L7/L12 stalk, while the extended C-terminal helix binds to two or three dimers of the NTD of L7/L12 (L7 and L12 are identical except for an acetylated N-terminus). The L7/L12 stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been sho

>PF00466 Ribosomal_L10: Ribosomal protein L10; InterPro: IPR001790 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=99.87  E-value=4.2e-22  Score=160.40  Aligned_cols=96  Identities=32%  Similarity=0.485  Sum_probs=90.7

Q ss_pred             cHHHHHHHHHHHHHHHhccCeEEEEEeCCCCcHHHHHHHHHccCC-cEEEEEehHHHHHHHhhchhhcCCcccc-ccccc
Q 021064            7 KAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGD-SVVLMGKNTMMKRTIRMHAEKTGNTAFL-NLIPL   84 (318)
Q Consensus         7 ~~e~K~~~v~el~e~l~~y~~v~iv~~~~v~s~qlq~IR~~Lr~~-a~~~vgKNtL~r~AL~~~~~~~~~~~l~-~L~~~   84 (318)
                      ++++|+++++++++.|++|+.+++++|+|++++|++++|++||+. ++++|+|||||++||+++.       .+ .|.++
T Consensus         2 ~~~~K~~~v~~~~~~l~~~~~v~v~~~~~l~~~~~~~lR~~l~~~~~~~~v~KN~l~~~Al~~~~-------~~~~l~~~   74 (100)
T PF00466_consen    2 TKEKKEEIVEELKELLKKSKYVIVVDYNGLSANQLQELRKELRKKGGKFKVVKNTLMKKALKNTG-------FEEALSPL   74 (100)
T ss_dssp             SCHHHHHHHHHHHHHHHCSSEEEEEECTTSCHHHHHHHHHHHHHHTEEEEECSHHHHHHHHHHHH-------TSSSSSCC
T ss_pred             cHHHHHHHHHHHHHHHHhCCEEEEEEeCCCCHHHHHHHHHHHHhcCcEEEEecHHHHHHHHhcCc-------cccCcccc
Confidence            589999999999999999999999999999999999999999975 9999999999999999986       44 68999


Q ss_pred             ccCceEEEEecCChHHHHHHHHhhc
Q 021064           85 LQGNVGLIFTKGDLKEVKEEVAKYK  109 (318)
Q Consensus        85 L~G~~gLiFTn~dp~ev~k~l~~~k  109 (318)
                      |+|++|++||++||.+++++|.+|.
T Consensus        75 l~G~~~~if~~~d~~~~~k~l~~~~   99 (100)
T PF00466_consen   75 LKGPTALIFSNEDPFEIAKILKKFA   99 (100)
T ss_dssp             TSSSEEEEEESSSHHHHHHHHHHST
T ss_pred             ccCCEEEEEECCCHHHHHHHHHHhc
Confidence            9999999999999999999998774

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. On the basis of sequence similarities the following prokaryotic and eukaryotic ribosomal proteins can be grouped: Bacterial 50S ribosomal protein L10; Archaebacterial acidic ribosomal protein P0 homologue (L10E); Eukaryotic 60S ribosomal protein P0 (L10E). This entry represents the ribosomal protein L10P family, with includes the above mentioned ribosomal proteins.; GO: 0042254 ribosome biogenesis, 0005622 intracellular; PDB: 3A1Y_G 3D5D_J 3PYT_I 3PYV_I 3D5B_J 3PYO_I 3PYR_I 3MS1_I 3MRZ_I 1VQ9_G ....

>PRK00099 rplJ 50S ribosomal protein L10; Reviewed

Probab=99.83  E-value=1.6e-20  Score=165.76  Aligned_cols=97  Identities=23%  Similarity=0.296  Sum_probs=92.0

Q ss_pred             cHHHHHHHHHHHHHHHhccCeEEEEEeCCCCcHHHHHHHHHccC-CcEEEEEehHHHHHHHhhchhhcCCcccccccccc
Q 021064            7 KAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRG-DSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLL   85 (318)
Q Consensus         7 ~~e~K~~~v~el~e~l~~y~~v~iv~~~~v~s~qlq~IR~~Lr~-~a~~~vgKNtL~r~AL~~~~~~~~~~~l~~L~~~L   85 (318)
                      +|++|+++++++++++++|+.+++++|+|++++|+++||++||+ +++++|+|||||++|++++.       ++.|.++|
T Consensus         2 ~r~~K~~~v~~l~~~l~~~~~v~v~~~~gl~~~~~~~lR~~lr~~~~~~~V~KNtL~~~Al~~~~-------~~~l~~~l   74 (172)
T PRK00099          2 NREEKKEIVAELAEKLKKAQSAVVADYRGLTVAQMTELRKKLREAGVEYKVVKNTLARRALEGTG-------FEGLDDLL   74 (172)
T ss_pred             CHHHHHHHHHHHHHHHHhCCEEEEEecCCCcHHHHHHHHHHHHHcCCEEEEehhHHHHHHHhcCC-------chhhhhhC
Confidence            48899999999999999999999999999999999999999997 58999999999999999874       88999999


Q ss_pred             cCceEEEEecCChHHHHHHHHhhcc
Q 021064           86 QGNVGLIFTKGDLKEVKEEVAKYKV  110 (318)
Q Consensus        86 ~G~~gLiFTn~dp~ev~k~l~~~k~  110 (318)
                      +|++|++||++||.++++++.+|..
T Consensus        75 ~G~~al~fs~~d~~~~~k~l~~f~K   99 (172)
T PRK00099         75 KGPTAIAFSYEDPVAAAKVLKDFAK   99 (172)
T ss_pred             cCCeEEEEeCCChHHHHHHHHHHHh
Confidence            9999999999999999999988854

>cd05797 Ribosomal_L10 Ribosomal protein L10 family, L10 subfamily; composed of bacterial 50S ribosomal protein and eukaryotic mitochondrial 39S ribosomal protein, L10

Probab=99.83  E-value=2.3e-20  Score=162.13  Aligned_cols=98  Identities=27%  Similarity=0.338  Sum_probs=92.6

Q ss_pred             cHHHHHHHHHHHHHHHhccCeEEEEEeCCCCcHHHHHHHHHccCC-cEEEEEehHHHHHHHhhchhhcCCcccccccccc
Q 021064            7 KAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGD-SVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLL   85 (318)
Q Consensus         7 ~~e~K~~~v~el~e~l~~y~~v~iv~~~~v~s~qlq~IR~~Lr~~-a~~~vgKNtL~r~AL~~~~~~~~~~~l~~L~~~L   85 (318)
                      .+++|+++++++++++++|+.+++++|+|++++|++++|++||+. ++++|+||||+++|+++++       ++.+.++|
T Consensus         1 ~~~~K~~~v~~l~~~l~~~~~v~v~~~~gl~~~~~~~lR~~lr~~~~~~~V~KNtL~~~Al~~t~-------~~~l~~~l   73 (157)
T cd05797           1 NREKKEEIVAELKEKLKEAKSVVVADYRGLTVAQLTELRKELREAGVKLKVVKNTLAKRALEGTG-------FEDLDDLL   73 (157)
T ss_pred             ChHHHHHHHHHHHHHHHhCCEEEEEecCCCcHHHHHHHHHHHHHcCCEEEEehhHHHHHHHhcCC-------chhhHhhC
Confidence            478999999999999999999999999999999999999999974 8999999999999999885       78899999


Q ss_pred             cCceEEEEecCChHHHHHHHHhhccC
Q 021064           86 QGNVGLIFTKGDLKEVKEEVAKYKVG  111 (318)
Q Consensus        86 ~G~~gLiFTn~dp~ev~k~l~~~k~~  111 (318)
                      +|++|++||++||.+++++|.+|...
T Consensus        74 ~G~~al~f~~~d~~~~~k~l~~f~k~   99 (157)
T cd05797          74 KGPTAIAFSEEDPVAAAKVLKDFAKE   99 (157)
T ss_pred             cCCEEEEEeCCChHHHHHHHHHHHHh
Confidence            99999999999999999999988664

L10 occupies the L7/L12 stalk of the ribosome. The N-terminal domain (NTD) of L10 interacts with L11 protein and forms the base of the L7/L12 stalk, while the extended C-terminal helix binds to two or three dimers of the NTD of L7/L12 (L7 and L12 are identical except for an acetylated N-terminus). The L7/L12 stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-in

>PRK04019 rplP0 acidic ribosomal protein P0; Validated

Probab=99.82  E-value=2.2e-20  Score=180.62  Aligned_cols=229  Identities=15%  Similarity=0.136  Sum_probs=187.8

Q ss_pred             HHHHHHHHHHHhccCeEEEEE-------eCCCCcHHHHHHHHHccCCcEEEEEehHH--HHHHHhhchhhcCC-cc----
Q 021064           12 IAYDAKLCQLLEEYTQILVAA-------ADNVGSNQLQNIRRGLRGDSVVLMGKNTM--MKRTIRMHAEKTGN-TA----   77 (318)
Q Consensus        12 ~~~v~el~e~l~~y~~v~iv~-------~~~v~s~qlq~IR~~Lr~~a~~~vgKNtL--~r~AL~~~~~~~~~-~~----   77 (318)
                      ...+.+||..+.....+++..       +.+.....+.+|-..|+|..-+.+.+...  +.+.+.+.....+. .|    
T Consensus        35 ~~ql~~lR~~lr~~~~~~v~KNtL~~~Al~~~~~~~~~~L~~~l~G~~alift~~dp~~v~k~l~~~~~~~~ak~G~iA~  114 (330)
T PRK04019         35 ARQLQEIRRKLRGKAELKVSKNTLIKRALEEAGEEDLEKLEDYLEGQVALIFTNMNPFKLYKLLEKSKTPAPAKPGDIAP  114 (330)
T ss_pred             HHHHHHHHHHHHcCCEEEEEehHHHHHHHHhcCcccHHHHHhhccCCEEEEEECCCHHHHHHHHHHcCCcccCCCCCCCC
Confidence            356788899888764444442       12222133788888999887777765443  34445544322221 11    


Q ss_pred             cccccccccCceEEEEecCChHHHHHHHHhhccCccccCCC--CCCceEEECCCCCCCCCCchhhhhhcCcceEEecceE
Q 021064           78 FLNLIPLLQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGL--VAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTV  155 (318)
Q Consensus        78 l~~L~~~L~G~~gLiFTn~dp~ev~k~l~~~k~~~~Ak~G~--iA~~dVvIp~G~t~~~P~~~s~fqkLgIptki~kG~I  155 (318)
                      .+-..+  .|+|     +.+|+.+...|.+.+.|++++.|.  |+++++++++|++ ++|++.+.||+|||++...+++|
T Consensus       115 ~divip--~G~t-----~~~P~~~~~~l~~lgipt~i~~G~I~i~~~~~v~~~G~~-v~~~~a~lL~~LgI~p~~~~~~i  186 (330)
T PRK04019        115 EDIVVP--AGPT-----GFPPGPILSELQKLGIPARIQKGKIVIKKDTVVAKAGEV-ISPELANVLQKLGIKPIEVGLDL  186 (330)
T ss_pred             CeEEEc--CCCC-----CCCCcccHHHHHHcCCCeEecCCEEEEecCeEEecCCCC-cCHHHHHHHHHcCCCHHHhhhHH
Confidence            111222  4555     789999999999999999999999  9999999999999 99999999999999999999999


Q ss_pred             EEecCeEEeecCcccChhHHHHHHHhCCCccccccceeeeeccCcccCCCcccCChHHHHHHHHHHHHHHHHHhhhcCCC
Q 021064          156 EIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYP  235 (318)
Q Consensus       156 ~I~~d~~v~k~Ge~v~~~qA~LL~~L~I~p~~~~l~l~~~~~~g~~~~~~~L~i~~e~~~~~~~~a~~~a~~ls~~~~yp  235 (318)
                           ..+...|..++++.+      +|.|.++..++..+|.++..++.+.-.+|++.+...|.+|+++|++||+++|||
T Consensus       187 -----~a~~~~G~~~~~~~l------~i~~e~~~~~i~~A~~~a~~Ls~~~~~pt~~tl~~~i~kA~~~a~aLa~~~~~~  255 (330)
T PRK04019        187 -----KAAYEDGVIYTPEVL------AIDEEKYRSDIQEAAQNAFNLAVNAAYPTPETLETLIQKAFREAKALAVEAGIV  255 (330)
T ss_pred             -----HHHHhcCCccCHHHc------cCCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence                 788889999999887      699999999999999999888888889999999999999999999999999999


Q ss_pred             CccchhhHHHHHHHHHHhhhhhcC
Q 021064          236 TLAAAPHMFVNAYKNVVAVALATE  259 (318)
Q Consensus       236 t~~s~p~~i~~a~~~a~ala~~~~  259 (318)
                      |+++++++|.+|+++++||+.+++
T Consensus       256 t~e~~~~il~kA~~~~~ala~~~~  279 (330)
T PRK04019        256 TPETADDILSKAVAQALALAAALA  279 (330)
T ss_pred             ChhhHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999976

>PTZ00240 60S ribosomal protein P0; Provisional

Probab=98.70  E-value=1.4e-07  Score=91.37  Aligned_cols=218  Identities=12%  Similarity=0.120  Sum_probs=163.6

Q ss_pred             HHHHHHHHHHhccCeEEEEEe-----------CCCCcHHHHHHH-------HHccCCcEEEEEehHHHHH--HHhhchhh
Q 021064           13 AYDAKLCQLLEEYTQILVAAA-----------DNVGSNQLQNIR-------RGLRGDSVVLMGKNTMMKR--TIRMHAEK   72 (318)
Q Consensus        13 ~~v~el~e~l~~y~~v~iv~~-----------~~v~s~qlq~IR-------~~Lr~~a~~~vgKNtL~r~--AL~~~~~~   72 (318)
                      ..+++||..+.....+++-.-           ++.....++++-       ..++|+.-+.|.+-.....  -+.+....
T Consensus        36 ~qlq~IR~~lrg~a~~~~GKNtlm~~AL~~~~~~~~~~~~~~ll~~~~~~~~~l~GnvgliFTn~~p~ev~~~l~~~k~~  115 (323)
T PTZ00240         36 QQVHDVRRALRGKAEFVMGKKTLQAKIVEKRAQAKKASAEAKLFNDQCEEKNLLSGNTGLIFTNNEVQEITSVLDSHRVK  115 (323)
T ss_pred             HHHHHHHHHhhCCcEEEEecHHHHHHHHhhccccccchhHHHHhhhhccccccccCCEEEEEeCCCHHHHHHHHHHcCCc
Confidence            467788888887666655421           111123366663       6778877777766655433  33333222


Q ss_pred             cCC-cc----cccccccccCceEEEEecCChHHHHHHHHhhccCccccCCC--CCCceEEECCCCCCCCCCchhhhhhcC
Q 021064           73 TGN-TA----FLNLIPLLQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGL--VAPIDVVVPPGNTGLDPSQTSFFQVLN  145 (318)
Q Consensus        73 ~~~-~~----l~~L~~~L~G~~gLiFTn~dp~ev~k~l~~~k~~~~Ak~G~--iA~~dVvIp~G~t~~~P~~~s~fqkLg  145 (318)
                      .+. .|    .+-..+  .|+|     +.+|. ....|.+...|+....|.  |..+.+++++|.. ++|++...|++||
T Consensus       116 a~AraG~IAp~dVvvp--aG~T-----~~~P~-~~s~fq~LGIpTkI~kGkIeI~~d~~v~k~Ge~-V~~~~A~LL~~L~  186 (323)
T PTZ00240        116 APARVGAIAPCDVIVP--AGST-----GMEPT-QTSFFQALNIATKIAKGMVEIVTEKKVLSVGDK-VDNSTATLLQKLN  186 (323)
T ss_pred             ccccCCCCCCceEEEC--CCCC-----CCCCc-chHHHHHcCCCeEecCcEEEEecCeEEecCCCC-cCHHHHHHHHHcC
Confidence            111 11    112222  4665     57887 488999999999999998  7788889999999 9999999999999


Q ss_pred             cceEEecceEEEecCeEEeecCcccChhHHHHHHHhCCCccccccceeeeeccCcccCCCcccCChHHHHHHHHHHHHHH
Q 021064          146 IPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMV  225 (318)
Q Consensus       146 Iptki~kG~I~I~~d~~v~k~Ge~v~~~qA~LL~~L~I~p~~~~l~l~~~~~~g~~~~~~~L~i~~e~~~~~~~~a~~~a  225 (318)
                      |.+---+-+|     ..+...|...+++.      |+|....|.-++..++.+-..++.+.-++|++.+.-.+.+|++++
T Consensus       187 IkP~~~gl~l-----~~vyd~g~i~~~~v------L~i~~e~~~~~~~~a~~~~~~lsl~~~~pt~~si~~~i~~a~~~~  255 (323)
T PTZ00240        187 ISPFYYQVEV-----LSVWDRGVLFTRED------LSMTEDVVEKMLMEGLSNVAAMSLGAGIPTAATIGPMLVDAFKNL  255 (323)
T ss_pred             CCeEEEEEEE-----EEEEeCCeecCHHH------cCCCHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHH
Confidence            9998887777     45666777778754      568888888888888888778889999999999999999999999


Q ss_pred             HHHhhhcCCCCccchhhHHHHHHHH
Q 021064          226 TALALAISYPTLAAAPHMFVNAYKN  250 (318)
Q Consensus       226 ~~ls~~~~ypt~~s~p~~i~~a~~~  250 (318)
                      ++||++++|+++++.+..+.+|--.
T Consensus       256 ~alav~~~~~~~~~~~~~~~~A~~~  280 (323)
T PTZ00240        256 LAVSVATSYEFEEHNGKELREAALE  280 (323)
T ss_pred             HHHhhhcCcCChhhHHHHHhhhCHH
Confidence            9999999999999999999888433

>PTZ00135 60S acidic ribosomal protein P0; Provisional

Probab=98.39  E-value=2.1e-06  Score=82.84  Aligned_cols=222  Identities=14%  Similarity=0.096  Sum_probs=160.0

Q ss_pred             HHHHHHHHHHHhccCeEEEEE-------eCCCC--cHHHHHHHHHccCCcEEEEEehHHH--HHHHhhchhhcC-Ccc--
Q 021064           12 IAYDAKLCQLLEEYTQILVAA-------ADNVG--SNQLQNIRRGLRGDSVVLMGKNTMM--KRTIRMHAEKTG-NTA--   77 (318)
Q Consensus        12 ~~~v~el~e~l~~y~~v~iv~-------~~~v~--s~qlq~IR~~Lr~~a~~~vgKNtL~--r~AL~~~~~~~~-~~~--   77 (318)
                      .+.+.+||..+.....+++..       +++..  ...+.+|-..|+|+.-+.+.+....  ++.+.+.....+ +.|  
T Consensus        37 s~ql~~iR~~LR~~a~~~vgKNTL~r~AL~~~~~~~~~l~~L~~~LkG~~gliFTn~dp~ev~k~l~~~k~~~~AKaG~i  116 (310)
T PTZ00135         37 SKQMQDIRRSLRGKAELLMGKNTLIRKALKQRLEELPELEKLLPHVKGNVGFVFTKDDLFEVKPVILENKVPAPARAGVI  116 (310)
T ss_pred             HHHHHHHHHHHhcCCEEEEEehHHHHHHHhhCcccccChHHHHhhccCCEEEEEECCCHHHHHHHHHHcCCccccccCCC
Confidence            356788899888765544432       11211  1247788889998877777755443  333443321111 111  


Q ss_pred             --cccccccccCceEEEEecCChHHHHHHHHhhccCccccCCC--CCCceEEECCCCCCCCCCchhhhhhcCcceEEecc
Q 021064           78 --FLNLIPLLQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGL--VAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKG  153 (318)
Q Consensus        78 --l~~L~~~L~G~~gLiFTn~dp~ev~k~l~~~k~~~~Ak~G~--iA~~dVvIp~G~t~~~P~~~s~fqkLgIptki~kG  153 (318)
                        .+-..+  .|+|     ..+|.. ...|.+...|+...-|.  |..+.+++++|.. ++|++...|+.|||..---+-
T Consensus       117 Ap~dv~ip--~G~t-----~~~P~~-~~~fq~LgipTkI~kG~I~I~~d~~v~k~Ge~-v~~~~A~LL~~L~I~p~~~~l  187 (310)
T PTZ00135        117 APIDVVIP--AGPT-----GMDPSQ-TSFFQALGIATKIVKGQIEITNEVHLIKEGQK-VGASQAVLLQKLNIKPFSYGL  187 (310)
T ss_pred             CCceEEEc--CCCC-----CCCcch-hhHHHHcCCceEecCCeEEEecCeEEecCCCC-cCHHHHHHHHHcCCCeEEEEE
Confidence              111122  4554     678875 78999999999999998  6788889999999 999999999999999988877


Q ss_pred             eEEEecCeEEeecCcccChhHHHHHHHhCCCccccccceeeeeccCcccCCCcccCChHHHHHHHHHHHHHHHHHhhhcC
Q 021064          154 TVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAIS  233 (318)
Q Consensus       154 ~I~I~~d~~v~k~Ge~v~~~qA~LL~~L~I~p~~~~l~l~~~~~~g~~~~~~~L~i~~e~~~~~~~~a~~~a~~ls~~~~  233 (318)
                      ++     ..+...|...+++.      |+|....+.-++...+.+-..++.+.-.+++..+...|.+|++++++||++++
T Consensus       188 ~~-----~~~yd~g~~~~~~v------L~i~~e~~~~~~~~~~~~i~als~aag~pt~~s~p~~ia~a~k~~~a~a~~~~  256 (310)
T PTZ00135        188 EV-----LSIYDNGSIYDAKV------LDITDEDIVAKFQEGVQNVAAISLAAGYPTEASAPHSILNAFKNLAAIGLESG  256 (310)
T ss_pred             EE-----EEEEECCeEeCHHH------cCCCHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhhcC
Confidence            77     34555666666654      55777777767776666655566666678999999999999999999999999


Q ss_pred             CCCccchhhHHHHHHHHHHh
Q 021064          234 YPTLAAAPHMFVNAYKNVVA  253 (318)
Q Consensus       234 ypt~~s~p~~i~~a~~~a~a  253 (318)
                      |+.+++.+.....|.-.+.+
T Consensus       257 ~~~~~~~~~~~~~a~~~~~~  276 (310)
T PTZ00135        257 FTFPLAEKIKEALANPSAAA  276 (310)
T ss_pred             CCChhhHHHHHhhcCchhhc
Confidence            99999999998887665554

>KOG4241 consensus Mitochondrial ribosomal protein L10 [Translation, ribosomal structure and biogenesis]

Probab=96.86  E-value=0.0032  Score=57.41  Aligned_cols=87  Identities=21%  Similarity=0.253  Sum_probs=77.6

Q ss_pred             HHHHHHHHhccCeEEEEEeCCCCcHHHHHHHHHccC-CcEEEEEehHHHHHHHhhchhhcCCcccccccccccCceEEEE
Q 021064           15 DAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRG-DSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIF   93 (318)
Q Consensus        15 v~el~e~l~~y~~v~iv~~~~v~s~qlq~IR~~Lr~-~a~~~vgKNtL~r~AL~~~~~~~~~~~l~~L~~~L~G~~gLiF   93 (318)
                      ..|+...++++..+.++.+--+++.++--.|.+||. +.+|+..-|++++.+++++.       ++.|.+.+.||.+++|
T Consensus        79 ~re~~~v~~~~R~~Avcq~~~v~a~d~~~~r~QLrk~ni~~ksygnkIlk~~~~~t~-------y~~l~plfvgnh~ill  151 (245)
T KOG4241|consen   79 LREDWMVREEFRVMAVCQFLPVPARDLWFARNQLRKKNIEFKSYGNKILKKIFDKTP-------YSSLNPLFVGNHAILL  151 (245)
T ss_pred             HHHHHHHHhhhhheeeeecccCcHHHHHHHHHHHHhccchhhhchHHHHHHHHhcCc-------hhhhhhheeccceEEE
Confidence            446677889999999999999999999999999996 57999999999999999886       8899999999999999


Q ss_pred             ecCChHHHHHHHHhhc
Q 021064           94 TKGDLKEVKEEVAKYK  109 (318)
Q Consensus        94 Tn~dp~ev~k~l~~~k  109 (318)
                      .. |+.++++++...+
T Consensus       152 ~~-d~~kik~~lri~r  166 (245)
T KOG4241|consen  152 AK-DISKIKSILRITR  166 (245)
T ss_pred             cC-ChHHHHHHHHHHh
Confidence            76 6888888886553

>cd05795 Ribosomal_P0_L10e Ribosomal protein L10 family, P0 and L10e subfamily; composed of eukaryotic 60S ribosomal protein P0 and the archaeal P0 homolog, L10e

Probab=93.22  E-value=0.42  Score=42.46  Aligned_cols=128  Identities=16%  Similarity=0.223  Sum_probs=84.7

Q ss_pred             HHHHHHHHHHHhccCeEEEEE-------eCCCC--cHHHHHHHHHccCCcEEEEEehHHH--HHHHhhchhhcCC-cc--
Q 021064           12 IAYDAKLCQLLEEYTQILVAA-------ADNVG--SNQLQNIRRGLRGDSVVLMGKNTMM--KRTIRMHAEKTGN-TA--   77 (318)
Q Consensus        12 ~~~v~el~e~l~~y~~v~iv~-------~~~v~--s~qlq~IR~~Lr~~a~~~vgKNtL~--r~AL~~~~~~~~~-~~--   77 (318)
                      ...+.+||..+.+...+++..       +.+..  ...+..+...|+|..-+.+.+....  .+.+.+.....+. .|  
T Consensus        30 ~~ql~~lR~~lr~~~~~~v~KNtL~~~Al~~~~~~~~~~~~L~~~l~G~~~liFt~~dp~~v~k~l~~~~~~~~ar~G~i  109 (175)
T cd05795          30 SKQLQKIRRSLRGKAEILMGKNTLIRRALRNLGDENPELEKLLPYLKGNVGFIFTNGDPFEIRKILEENKVPAPAKPGAI  109 (175)
T ss_pred             hHHHHHHHHHhhCCCEEEEechHHHHHHHHhcccccccHHHHHHHhcCCEEEEEECCCHHHHHHHHHHcCCcccccCCCc
Confidence            356778888888764444431       11221  1137788889998877778765443  3445544322221 11  


Q ss_pred             --cccccccccCceEEEEecCChHHHHHHHHhhccCccccCCC--CCCceEEECCCCCCCCCCchhhhhhcCcce
Q 021064           78 --FLNLIPLLQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGL--VAPIDVVVPPGNTGLDPSQTSFFQVLNIPT  148 (318)
Q Consensus        78 --l~~L~~~L~G~~gLiFTn~dp~ev~k~l~~~k~~~~Ak~G~--iA~~dVvIp~G~t~~~P~~~s~fqkLgIpt  148 (318)
                        .+-..+  .|+++     .+|...- .|.+...|+..+.|.  |..+.+++.+|.. ++|++...|+.|||.+
T Consensus       110 A~~dvvi~--~G~t~-----~~p~~~~-~~~~lgiptki~~G~i~i~~d~~v~k~G~~-v~~~~A~lL~~l~i~P  175 (175)
T cd05795         110 APCDVVVP--AGPTG-----MPPGPTS-FFQALGIPTKIEKGKIEIISDVVVVKKGEK-VGASEATLLNKLNIKP  175 (175)
T ss_pred             cCceEEEc--CCCcC-----CCCCchH-HHHHcCCceEEecCEEEEecCeEEecCCCC-cCHHHHHHHHHcCCCC
Confidence              111222  56664     4555544 899999999999998  7888899999999 9999999999999964

P0 or L10e forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. The stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-interacting protein (WIP). These eukaryotic and archaeal P0 sequences have an additional C-terminal domain homologous with acidic proteins P1 and P2.

>PF00428 Ribosomal_60s: 60s Acidic ribosomal protein; InterPro: IPR001813 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=88.92  E-value=0.13  Score=40.68  Aligned_cols=43  Identities=21%  Similarity=0.096  Sum_probs=37.2

Q ss_pred             CCCccchhhHHHHHHHHHHhhhhhcCccCCChHhHHHHhhcCC
Q 021064          234 YPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLAVCI  276 (318)
Q Consensus       234 ypt~~s~p~~i~~a~~~a~ala~~~~~~~~~~~~~~~~l~~~~  276 (318)
                      |||.++++++|.+++.+..+..+.+.+.+.+..+++++|+++.
T Consensus         1 ~pT~~~i~~vl~aag~~v~~~~~~~~~~~l~~~~i~~li~~~~   43 (88)
T PF00428_consen    1 EPTAENIKKVLKAAGVEVEAIWLELFAKALEGKDIKELIANGS   43 (88)
T ss_dssp             S-SCCCHHHHHHHHTHHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhCCchhHHHHHHHHHHHcCCcHHHHHhccc
Confidence            7999999999999999888888888888888889999998764

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The 60S acidic ribosomal protein plays an important role in the elongation step of protein synthesis. This family includes archaebacterial L12, eukaryotic P0, P1 and P2 []. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Alt a 6, Alt a 12, Cla h 3, Cla h 4 and Cla h 12.; GO: 0003735 structural constituent of ribosome, 0006414 translational elongation, 0005622 intracellular, 0005840 ribosome; PDB: 3A1Y_C 3N2D_B 2LBF_A 3IZS_t 3IZR_t 1S4J_A 2JDL_C 2W1O_B 1S4H_A 2ZKR_g.

>PF07697 7TMR-HDED: 7TM-HD extracellular; InterPro: IPR011624 This entry represents the extracellular domain of the 7TM-HD (7TM Receptors with HD hydrolase) protein family []

Probab=83.74  E-value=0.7  Score=41.30  Aligned_cols=27  Identities=33%  Similarity=0.621  Sum_probs=24.0

Q ss_pred             EecceEEEecCeEEeecCcccChhHHHHHHHhCC
Q 021064          150 INKGTVEIITPVELIRKGDKVGSSEAALLAKLGI  183 (318)
Q Consensus       150 i~kG~I~I~~d~~v~k~Ge~v~~~qA~LL~~L~I  183 (318)
                      |.+|.       .++++|++||+++..+|+.||+
T Consensus       193 V~~Ge-------~IV~kGe~VT~e~~~~L~~l~~  219 (222)
T PF07697_consen  193 VKKGE-------VIVRKGEIVTEEQYEKLESLGL  219 (222)
T ss_pred             ccCCC-------EEecCCcEeCHHHHHHHHHcCC
Confidence            56666       4999999999999999999986

These proteins are known or predicted, to posses metal-dependent phospohydrolase activity.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	318
3izr_s	319	Localization Of The Large Subunit Ribosomal Protein		1e-118
2zkr_g	317	Structure Of A Mammalian Ribosomal 60s Subunit With		3e-71
3izs_s	312	Localization Of The Large Subunit Ribosomal Protein		9e-58
3o5h_M	312	Yeast 80s Ribosome. This Entry Consists Of The 60s		7e-57
3u5i_q	312	The Structure Of The Eukaryotic Ribosome At 3.0 A R		2e-49
3cc2_G	348	The Refined Crystal Structure Of The Haloarcula Mar		3e-24
1jj2_G	348	Fully Refined Crystal Structure Of The Haloarcula M		1e-23
3a1y_G	284	The Structure Of Protein Complex Length = 284		3e-23
3j21_k	339	Promiscuous Behavior Of Proteins In Archaeal Riboso		2e-22
3jsy_A	213	N-Terminal Fragment Of Ribosomal Protein L10 From M		1e-16
3jyw_8	118	Structure Of The 60s Proteins For Eukaryotic Riboso		5e-16

>pdb|3IZR|SS Chain s, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 319

Iteration: 1
 Score =  419 bits (1077), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 208/272 (76%), Positives = 243/272 (89%)
Query: 1   MVVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNT 60
           M +K +KAEKK+AYD KLCQLL+EYT++L+A ADNVGSNQLQ IR+GLRGDS+VLMGKNT
Sbjct: 1   MAIKRTKAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNT 60
Query: 61  MMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVA 120
           +++R I++HA+ TGN  FL L+PLL GNVGLIFTKGDL            GAPARVGLVA
Sbjct: 61  LIRRCIKVHADNTGNKEFLELMPLLVGNVGLIFTKGDLKEVREEVAKYKVGAPARVGLVA 120
Query: 121 PIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAK 180
           P+DVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI+KGDKVGSSE+ALLAK
Sbjct: 121 PVDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSESALLAK 180
Query: 181 LGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAA 240
           LGIRPFSYGLV+ +VY++GSV+SPEVLDL+EDDL+EKFAS VSMV +++LAISYPT+AAA
Sbjct: 181 LGIRPFSYGLVITNVYDSGSVFSPEVLDLTEDDLMEKFASGVSMVASVSLAISYPTIAAA 240
Query: 241 PHMFVNAYKNVVAVALATEYSFPQADKVKEYL 272
           PHMF+N YKNV+AVA+ TEYS+P ADK+KEYL
Sbjct: 241 PHMFLNGYKNVLAVAVETEYSYPHADKIKEYL 272

>pdb|2ZKR|GG Chain g, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score =  265 bits (676), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 136/270 (50%), Positives = 185/270 (68%), Gaps = 2/270 (0%)
Query: 4   KASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMK 63
           +  +A  K  Y  K+ QLL++Y +  +  ADNVGS Q+Q IR  LRG +VVLMGKNTMM+
Sbjct: 3   REDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMR 62
Query: 64  RTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPID 123
           + IR H E   N A   L+P ++GNVG +FTK DL             A AR G +AP +
Sbjct: 63  KAIRGHLEN--NPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE 120
Query: 124 VVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGI 183
           V VP  NTGL P +TSFFQ L I TKI++GT+EI++ V+LI+ GDKVG+SEA LL  L I
Sbjct: 121 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 180
Query: 184 RPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHM 243
            PFS+GLV+Q V++NGS+Y+PEVLD++E+ L  +F   V  V ++ L I YPT+A+ PH 
Sbjct: 181 SPFSFGLVIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 240
Query: 244 FVNAYKNVVAVALATEYSFPQADKVKEYLA 273
            +N YK V+A+++ T+Y+FP A+KVK +LA
Sbjct: 241 IINGYKRVLALSVETDYTFPLAEKVKAFLA 270

>pdb|3IZS|SS Chain s, Localization Of The Large Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 312

Iteration: 1
 Score =  220 bits (560), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 118/260 (45%), Positives = 170/260 (65%), Gaps = 2/260 (0%)
Query: 9   EKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRM 68
           EKK  Y AKL + LEEY  + V   DNV S Q+  +R+ LRG +VVLMGKNTM++R IR 
Sbjct: 6   EKKAEYFAKLREYLEEYKSLFVVGVDNVSSQQMHEVRKELRGRAVVLMGKNTMVRRAIRG 65
Query: 69  HAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPP 128
                 +  F  L+P ++GNVG +FT   L             APAR G VAP D+ V  
Sbjct: 66  FLSDLPD--FEKLLPFVKGNVGFVFTNEPLTEIKNVIVSNRVAAPARAGAVAPEDIWVRA 123
Query: 129 GNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSY 188
            NTG++P +TSFFQ L +PTKI +GT+EI++ V+++  G+KVG SEA+LL  L I PF++
Sbjct: 124 VNTGMEPGKTSFFQALGVPTKIARGTIEIVSDVKVVDAGNKVGQSEASLLNLLNISPFTF 183
Query: 189 GLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAY 248
           GL V  VY+NG V+   +LD+++++LV  F S+VS + +++LAI YPTL +  H  +N Y
Sbjct: 184 GLTVVQVYDNGQVFPSSILDITDEELVSHFVSAVSTIASISLAIGYPTLPSVGHTLINNY 243
Query: 249 KNVVAVALATEYSFPQADKV 268
           K+++AVA+A  Y +P+ + +
Sbjct: 244 KDLLAVAIAASYHYPEIEDL 263

>pdb|3O5H|M Chain M, Yeast 80s Ribosome. This Entry Consists Of The 60s Subunit Of The Second 80s In The Asymmetric Unit Length = 312

Iteration: 1
 Score =  217 bits (552), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 117/260 (45%), Positives = 169/260 (65%), Gaps = 2/260 (0%)
Query: 9   EKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRM 68
           EKK  Y AKL + LEEY  + V   DNV S Q+  +R+ LRG +VVLMGKNTM++R IR 
Sbjct: 6   EKKAEYFAKLREYLEEYKSLFVVGVDNVSSQQMHEVRKELRGRAVVLMGKNTMVRRAIRG 65
Query: 69  HAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPP 128
                 +  F  L+P ++G VG +FT   L             APAR G VAP D+ V  
Sbjct: 66  FLSDLPD--FEKLLPFVKGYVGFVFTNEPLTEIKNVIVSNRVAAPARAGAVAPEDIWVRA 123
Query: 129 GNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSY 188
            NTG++P +TSFFQ L +PTKI +GT+EI++ V+++  G+KVG SEA+LL  L I PF++
Sbjct: 124 VNTGMEPGKTSFFQALGVPTKIARGTIEIVSDVKVVDAGNKVGQSEASLLNLLNISPFTF 183
Query: 189 GLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAY 248
           GL V  VY+NG V+   +LD+++++LV  F S+VS + +++LAI YPTL +  H  +N Y
Sbjct: 184 GLTVVQVYDNGQVFPSSILDITDEELVSHFVSAVSTIASISLAIGYPTLPSVGHTLINNY 243
Query: 249 KNVVAVALATEYSFPQADKV 268
           K+++AVA+A  Y +P+ + +
Sbjct: 244 KDLLAVAIAASYHYPEIEDL 263

>pdb|3U5I|QQ Chain q, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Proteins Of The 60s Subunit, Ribosome B Length = 312

Iteration: 1
 Score =  192 bits (487), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 110/260 (42%), Positives = 154/260 (59%), Gaps = 2/260 (0%)
Query: 9   EKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRM 68
           EKK  Y AKL + LEEY  + V   DNV S Q+  +R+ LRG +VVLMGKNTM++R IR 
Sbjct: 6   EKKAEYFAKLREYLEEYKSLFVVGVDNVSSQQMHEVRKELRGRAVVLMGKNTMVRRAIRG 65
Query: 69  HAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPP 128
                 +  F  L+P ++GNVG +FT   L             APAR G VAP D+ V  
Sbjct: 66  FLSDLPD--FEKLLPFVKGNVGFVFTNEPLTEIKNVIVSNRVAAPARAGAVAPEDIWVRA 123
Query: 129 GNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSY 188
            NTG++P +TSFFQ L +PTKI +GT+EI++ V+++  G+KVG SEA+LL  L I PF++
Sbjct: 124 VNTGMEPGKTSFFQALGVPTKIARGTIEIVSDVKVVDAGNKVGQSEASLLNLLNISPFTF 183
Query: 189 GLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAY 248
           GL V  VY+NG V+                        +++LAI YPTL +  H  +N Y
Sbjct: 184 GLTVVQVYDNGQVFPXXXXXXXXXXXXXXXXXXXXXXXSISLAIGYPTLPSVGHTLINNY 243
Query: 249 KNVVAVALATEYSFPQADKV 268
           K+++AVA+A  Y +P+ + +
Sbjct: 244 KDLLAVAIAASYHYPEIEDL 263

>pdb|3CC2|G Chain G, The Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution With Rrna Sequence For The 23s Rrna And Genome-Derived Sequences For R-Proteins Length = 348

Iteration: 1
 Score =  108 bits (271), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 69/256 (26%), Positives = 127/256 (49%), Gaps = 7/256 (2%)
Query: 10  KKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMH 69
           K+   DA + +++E Y  + V     + S QLQ++RR L G + + + +NT+++R +   
Sbjct: 16  KQEEVDA-IVEMIESYESVGVVNIAGIPSRQLQDMRRDLHGTAELRVSRNTLLERAL--- 71
Query: 70  AEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPG 129
                +    +L   + G VGLI T  +              AP   G VAP D+V+P G
Sbjct: 72  --DDVDDGLEDLNGYITGQVGLIGTDDNPFSLFQELEASKTPAPIGAGEVAPNDIVIPEG 129
Query: 130 NTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSY 188
           +TG+DP       Q +    +I +G++++++   ++  G++V    + +L +LGI P   
Sbjct: 130 DTGVDPGPFVGELQSVGADARIQEGSIQVLSDSTVLDTGEEVSQELSNVLNELGIEPKEV 189
Query: 189 GLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAY 248
           GL +++V+ +G ++ PE L+L  D+      ++      L++   YPT   AP M  +A 
Sbjct: 190 GLDLRAVFADGVLFEPEELELDIDEYRSDIQAAAGRAFNLSVNADYPTATTAPTMLQSAR 249
Query: 249 KNVVAVALATEYSFPQ 264
            N  ++AL      P+
Sbjct: 250 GNAKSLALQAAIEDPE 265

>pdb|1JJ2|G Chain G, Fully Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution Length = 348

Iteration: 1
 Score =  107 bits (266), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 68/256 (26%), Positives = 126/256 (49%), Gaps = 7/256 (2%)
Query: 10  KKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMH 69
           K+   DA + +++E Y  + V     + S QLQ++RR L G + + + +NT+++R +   
Sbjct: 16  KQEEVDA-IVEMIESYESVGVVNIAGIPSRQLQDMRRDLHGTAELRVSRNTLLERAL--- 71
Query: 70  AEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPG 129
                +    +L   + G VGLI T  +              AP   G VAP D+V+P G
Sbjct: 72  --DDVDDGLEDLNGYITGQVGLIGTDDNPFSLFQELEASKTPAPIGAGEVAPNDIVIPEG 129
Query: 130 NTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSY 188
           +TG+DP       Q +    +I +G++++++   ++  G++V    + +L +LGI P   
Sbjct: 130 DTGVDPGPFVGELQSVGADARIQEGSIQVLSDSTVLDTGEEVSQELSNVLNELGIEPKEV 189
Query: 189 GLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAY 248
           GL +++V+ +G ++ PE L+L  D+      ++      L++   YPT   AP M  +  
Sbjct: 190 GLDLRAVFADGVLFEPEELELDIDEYRSDIQAAAGRAFNLSVNADYPTATTAPTMLQSDR 249
Query: 249 KNVVAVALATEYSFPQ 264
            N  ++AL      P+
Sbjct: 250 GNAKSLALQAAIEDPE 265

>pdb|3A1Y|G Chain G, The Structure Of Protein Complex Length = 284

Iteration: 1
 Score =  105 bits (262), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 76/258 (29%), Positives = 124/258 (48%), Gaps = 2/258 (0%)
Query: 5   ASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVL-MGKNTMMK 63
           A  AE K     +L +L++ Y  I +    ++ +  L  +RR +R +  +L + +NT+++
Sbjct: 2   AHVAEWKKKEVEELAKLIKSYPVIALVDVSSMPAYPLSQMRRLIRENGGLLRVSRNTLIE 61
Query: 64  RTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPID 123
             I+  A++ G      L+  +    G++ T  +              APA+ G V P D
Sbjct: 62  LAIKKAAKELGKPELEKLVEYIDRGAGILVTNMNPFKLYKFLQQNRQPAPAKPGAVVPKD 121
Query: 124 VVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLG 182
           VVVP G T L P       Q L IP +I KG V I     +++ G+ +    A +L  LG
Sbjct: 122 VVVPAGPTPLAPGPIVGQMQALGIPARIEKGKVTIQKDTTVLKAGEVITPELANILNALG 181
Query: 183 IRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPH 242
           I+P   GL V +VYE+G VY+P+VL + E + ++    +      LA+ I+YPT      
Sbjct: 182 IQPLEVGLDVLAVYEDGIVYTPDVLAIDEQEYIDMLQKAYMHAFNLAVNIAYPTPETIEA 241
Query: 243 MFVNAYKNVVAVALATEY 260
           +   A+ N   VA+   Y
Sbjct: 242 IIQKAFLNAKTVAIEAGY 259

>pdb|3J21|KK Chain k, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (50s Ribosomal Proteins) Length = 339

Iteration: 1
 Score =  103 bits (256), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/258 (27%), Positives = 126/258 (48%), Gaps = 2/258 (0%)
Query: 5   ASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVL-MGKNTMMK 63
           A  AE K     +L  L++ Y  + +    ++ +  L  +RR +R ++ +L + +NT+++
Sbjct: 2   AHVAEWKKKEVEELANLIKSYPVVALVDVSSMPAYPLSQMRRLIRENNGLLRVSRNTLIE 61
Query: 64  RTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPID 123
             I+  A++ G      LI  ++G  G++ T  +              APA+ G   P D
Sbjct: 62  LAIKKVAQELGKPELEKLINYIEGGAGILVTTMNPFKLYKFLQQNRQPAPAKPGAKVPKD 121
Query: 124 VVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLG 182
           VV+P G T L P       Q + IP +I +G V I     +++ G+++    A +L  LG
Sbjct: 122 VVIPAGPTSLAPGPIVGQMQAMGIPARIERGKVTIQKDTVVLKAGEEITPELANILNALG 181
Query: 183 IRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPH 242
           I+P   GL + +VYE+G +Y+P+VL + E + +     +      LA+ I+YPT      
Sbjct: 182 IQPLEVGLDLLAVYEDGIIYTPDVLAIDESEYINMLQKAYMHAFNLAVNIAYPTPQTIEA 241
Query: 243 MFVNAYKNVVAVALATEY 260
           +   A+ N  AVA+   Y
Sbjct: 242 IIQKAFLNAKAVAVEAGY 259

>pdb|3JSY|A Chain A, N-Terminal Fragment Of Ribosomal Protein L10 From Methanococ Jannaschii Length = 213

Iteration: 1
 Score = 84.0 bits (206), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 56/182 (30%), Positives = 94/182 (51%), Gaps = 1/182 (0%)
Query: 35  NVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFT 94
           +V + QLQ IR  +R    + M +NT++ R ++  AE+  N     L   ++    ++ T
Sbjct: 29  DVPAPQLQEIRDKIRDKVKLRMSRNTLIIRALKEAAEELNNPKLAELANYVERGAAILVT 88
Query: 95  KGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKG 153
             +              AP R G +AP D+ V  G+TG+ P       + + IP  I KG
Sbjct: 89  DMNPFKLYKLLEENKSPAPVRGGQIAPCDIKVEKGSTGMPPGPFLGELKSVGIPAAIEKG 148
Query: 154 TVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDD 213
            + I     +++KG+ V    AA+L +LGI+P   GL + +VYE+G +Y+P+VL + E+ 
Sbjct: 149 KIAIKEDKVVVKKGEVVSPKLAAVLDRLGIKPIKVGLNILAVYEDGIIYTPDVLKVDEEK 208
Query: 214 LV 215
           L+
Sbjct: 209 LL 210

>pdb|3JYW|8 Chain 8, Structure Of The 60s Proteins For Eukaryotic Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 118

Iteration: 1
 Score = 81.6 bits (200), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 41/86 (47%), Positives = 54/86 (62%), Gaps = 2/86 (2%)
Query: 9  EKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRM 68
          EKK  Y AKL + LEEY  + V   DNV S Q+  +R+ LRG +VVLMGKNTM++R IR 
Sbjct: 4  EKKAEYFAKLREYLEEYKSLFVVGVDNVSSQQMHEVRKELRGRAVVLMGKNTMVRRAIRG 63
Query: 69 HAEKTGNTAFLNLIPLLQGNVGLIFT 94
                +  F  L+P ++G VG +FT
Sbjct: 64 FLSDLPD--FEKLLPFVKGYVGFVFT 87

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	318
3iz5_s	319	60S acidic ribosomal protein P0 (L10P); eukaryotic	100.0
3u5i_q	312	A0, L10E, 60S acidic ribosomal protein P0; transla	100.0
2zkr_g	317	60S acidic ribosomal protein P0; protein-RNA compl	100.0
3j21_k	339	Acidic ribosomal protein P0 homolog; archaea, arch	100.0
1vq8_G	348	Acidic ribosomal protein P0 homolog; ribosome 50S,	100.0
3a1y_G	284	Acidic ribosomal protein P0; stalk, helix SPIN, ri	100.0
3jsy_A	213	Acidic ribosomal protein P0 homolog; ribonucleopro	100.0
2j01_J	173	50S ribosomal protein L10; ribosome, tRNA, paromom	99.86
1zav_A	180	50S ribosomal protein L10; ribosome structure and	99.84
3sgf_H	165	50S ribosomal protein L10; typeii release factor b	99.81
3a1y_G	284	Acidic ribosomal protein P0; stalk, helix SPIN, ri	99.08
1vq8_G	348	Acidic ribosomal protein P0 homolog; ribosome 50S,	99.04
3j21_k	339	Acidic ribosomal protein P0 homolog; archaea, arch	99.01
3u5i_q	312	A0, L10E, 60S acidic ribosomal protein P0; transla	98.28
3iz5_s	319	60S acidic ribosomal protein P0 (L10P); eukaryotic	98.1
2zkr_g	317	60S acidic ribosomal protein P0; protein-RNA compl	97.77
3jsy_A	213	Acidic ribosomal protein P0 homolog; ribonucleopro	93.55

>3u5i_q A0, L10E, 60S acidic ribosomal protein P0; translation, ribosome, ribosomal R ribosomal protein, STM1; 3.00A {Saccharomyces cerevisiae} PDB: 4b6a_q 3izc_s 3izs_s 3j16_G* 3o5h_M 3jyw_8

Probab=100.00  E-value=4.2e-82  Score=602.84  Aligned_cols=271  Identities=42%  Similarity=0.719  Sum_probs=138.0

Q ss_pred             ccHHHHHHHHHHHHHHHhccCeEEEEEeCCCCcHHHHHHHHHccCCcEEEEEehHHHHHHHhhchhhcCCcccccccccc
Q 021064            6 SKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLL   85 (318)
Q Consensus         6 k~~e~K~~~v~el~e~l~~y~~v~iv~~~~v~s~qlq~IR~~Lr~~a~~~vgKNtL~r~AL~~~~~~~~~~~l~~L~~~L   85 (318)
                      .++++|+++|++|++++++|+.++|+||+||+++|+++||++||+.++++|+|||||++|++++.++  .+++++|.++|
T Consensus         3 ~~re~K~~~v~el~e~l~~~~~v~vv~~~gl~v~ql~~LR~~lR~~~~~~V~KNTL~r~Al~~~~~~--~~~le~L~~~L   80 (312)
T 3u5i_q            3 GIREKKAEYFAKLREYLEEYKSLFVVGVDNVSSQQMHEVRKELRGRAVVLMGKNTMVRRAIRGFLSD--LPDFEKLLPFV   80 (312)
T ss_dssp             CHHHHHHHHHHHHHHHHHHCSEEEEEECSSCCHHHHHHHHHHHSSSCEEEECCHHHHHHHHHTTSSS--SCGGGGTGGGC
T ss_pred             CcHHHHHHHHHHHHHHHHhCCEEEEEecCCCCHHHHHHHHHHHhcCceEEEeehHHHHHHHhhCccc--ccChHHHHHhc
Confidence            6799999999999999999999999999999999999999999988899999999999999997554  34599999999


Q ss_pred             cCceEEEEecCChHHHHHHHHhhccCccccCCCCCCceEEECCCCCCCCCCchhhhhhcCcceEEecceEEEecCeEEee
Q 021064           86 QGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIR  165 (318)
Q Consensus        86 ~G~~gLiFTn~dp~ev~k~l~~~k~~~~Ak~G~iA~~dVvIp~G~t~~~P~~~s~fqkLgIptki~kG~I~I~~d~~v~k  165 (318)
                      +|++||+|||+||.+++++|.+|++++|||+|++||+||+||+|||+|+|+++||||+|||||+|++|+|+|.+|++||+
T Consensus        81 ~G~~gl~Ft~~dp~~v~k~l~~~k~~~pAr~GaiAp~dV~Ip~G~tg~~P~~~s~fq~Lgiptki~kG~I~I~~d~~v~k  160 (312)
T 3u5i_q           81 KGNVGFVFTNEPLTEIKNVIVSNRVAAPARAGAVAPEDIWVRAVNTGMEPGKTSFFQALGVPTKIARGTIEIVSDVKVVD  160 (312)
T ss_dssp             CSSEEEEEESSCHHHHHHHHHTSSCCC-----------------------------------------------------
T ss_pred             cCCEEEEEECCCHHHHHHHHHhccCcccccCCCcCCceEEECCCCCCCCCcchHHHHHcCCCeEeeCCEEEEccceEEEe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCcccChhHHHHHHHhCCCccccccceeeeeccCcccCCCcccCChHHHHHHHHHHHHHHHHHhhhcCCCCccchhhHHH
Q 021064          166 KGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFV  245 (318)
Q Consensus       166 ~Ge~v~~~qA~LL~~L~I~p~~~~l~l~~~~~~g~~~~~~~L~i~~e~~~~~~~~a~~~a~~ls~~~~ypt~~s~p~~i~  245 (318)
                      +||+||++||+||++|||+|++|++.|+++||+|.+|+|++|+||+|+|+++|++|++++++||+++||||++|+||+|.
T Consensus       161 ~G~~v~~~~A~lL~~l~i~p~~~~l~l~~~~d~g~i~~~~~L~i~~e~~~~~~~~~~~~~~~lsl~~~ypt~~s~~~~i~  240 (312)
T 3u5i_q          161 AGNKVGQSEASLLNLLNISPFTFGLTVVQVYDNGQVFPXXXXXXXXXXXXXXXXXXXXXXXSISLAIGYPTLPSVGHTLI  240 (312)
T ss_dssp             -----------------------CCEEEEEEESSCCCCSTTTSCCSSTTTHHHHHHHTTCC-------------------
T ss_pred             CCCCcCHHHHHHHHHcCcCcEEEEEEEEEEecCCceeccccccccccccccccccchhhHhhhHHhhCCCcHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhhcCccCCChHhHHHHhhcCCCC
Q 021064          246 NAYKNVVAVALATEYSFPQADKVKEYLAVCISC  278 (318)
Q Consensus       246 ~a~~~a~ala~~~~~~~~~~~~~~~~l~~~~~~  278 (318)
                      |||++++|||++++|+||+++++|++|+||++-
T Consensus       241 ~a~k~~~a~a~~~~~~~~~~~~ik~~la~p~a~  273 (312)
T 3u5i_q          241 NNYKDLLAVAIAASYHYPEIEDLVDRIENPEKY  273 (312)
T ss_dssp             ---------------------------------
T ss_pred             HHHHHHHHHHHhhcccCccchhHHHHHhChhhh
Confidence            999999999999999999999999999999864

>2zkr_g 60S acidic ribosomal protein P0; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}

Probab=100.00  E-value=2.6e-81  Score=598.52  Aligned_cols=274  Identities=51%  Similarity=0.853  Sum_probs=13.0

Q ss_pred             CCcccccHHHHHHHHHHHHHHHhccCeEEEEEeCCCCcHHHHHHHHHccCCcEEEEEehHHHHHHHhhchhhcCCccccc
Q 021064            1 MVVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLN   80 (318)
Q Consensus         1 m~~~kk~~e~K~~~v~el~e~l~~y~~v~iv~~~~v~s~qlq~IR~~Lr~~a~~~vgKNtL~r~AL~~~~~~~~~~~l~~   80 (318)
                      |+ ++++++||+++|++|++++++|+.++|+||+||+++|+++||++||+.++++|+|||||++||+++.+.  .+++++
T Consensus         1 ~~-~~~~~e~K~~~V~eL~e~l~~~~~v~vvd~~gl~v~ql~~LR~~lR~~~~~~V~KNTL~r~Al~~~~~~--~~~~e~   77 (317)
T 2zkr_g            1 MP-REDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLEN--NPALEK   77 (317)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CC-ccchHHHHHHHHHHHHHHHHhCCEEEEEECCCCCHHHHHHHHHHHhcCcEEEEEeHHHHHHHHhhCccc--ccchhh
Confidence            66 777899999999999999999999999999999999999999999988999999999999999998543  345999


Q ss_pred             ccccccCceEEEEecCChHHHHHHHHhhccCccccCCCCCCceEEECCCCCCCCCCchhhhhhcCcceEEecceEEEecC
Q 021064           81 LIPLLQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITP  160 (318)
Q Consensus        81 L~~~L~G~~gLiFTn~dp~ev~k~l~~~k~~~~Ak~G~iA~~dVvIp~G~t~~~P~~~s~fqkLgIptki~kG~I~I~~d  160 (318)
                      |.++|+|++||+||++||.+++++|.+|++++|||+|++||+||+||+|+|+|+|+++++||+|||||+|++|+|+|.+|
T Consensus        78 L~~~L~G~~al~Ft~~Dp~~vaK~l~~f~~~~pAr~GaiAp~dV~Ip~G~t~~~p~~~~~fq~LgipTkI~kG~I~i~~d  157 (317)
T 2zkr_g           78 LLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSD  157 (317)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hhhccCCCEEEEEECCCHHHHHHHHHHhCccchhccCCcCCceEEeCCCCCCCCCcchHHHHHcCCCeEeeCCeEEEecc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEeecCcccChhHHHHHHHhCCCccccccceeeeeccCcccCCCcccCChHHHHHHHHHHHHHHHHHhhhcCCCCccch
Q 021064          161 VELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAA  240 (318)
Q Consensus       161 ~~v~k~Ge~v~~~qA~LL~~L~I~p~~~~l~l~~~~~~g~~~~~~~L~i~~e~~~~~~~~a~~~a~~ls~~~~ypt~~s~  240 (318)
                      ++||++||+||++||+||++|||+|++|++.++++||+|.+|+|++|+||+|+|.++|++|++++++||+++||||++|+
T Consensus       158 ~~v~k~G~~v~~~~A~lL~~l~i~p~~~~l~l~~~~d~g~~~~~~~L~i~~e~~~~~~~~~~~~~~~lsl~~~~pt~~s~  237 (317)
T 2zkr_g          158 VQLIKTGDKVGASEATLLNMLNISPFSFGLVIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASV  237 (317)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             eEEecCCCCcCHHHHHHHHHcCCCceeeeeeeeEEEecCcccchHhccCCHHHHHHHHHHHHHHHHHHHHHhCCCcHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHhhhhhcCccCCChHhHHHHhhcCCC
Q 021064          241 PHMFVNAYKNVVAVALATEYSFPQADKVKEYLAVCIS  277 (318)
Q Consensus       241 p~~i~~a~~~a~ala~~~~~~~~~~~~~~~~l~~~~~  277 (318)
                      ||+|.|||+++++||++++|+||+++++|++|+||++
T Consensus       238 ~~~i~~a~~~~~ala~~~~~~~~ea~~vk~~l~~~~~  274 (317)
T 2zkr_g          238 PHSIINGYKRVLALSVETDYTFPLAEKVKAFLADPSA  274 (317)
T ss_dssp             -----------------------CHHHHHTTTHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhcccChhhhhhHHHHHhccCc
Confidence            9999999999999999999999999999999999974

>3j21_k Acidic ribosomal protein P0 homolog; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=100.00  E-value=1.1e-77  Score=578.78  Aligned_cols=269  Identities=26%  Similarity=0.481  Sum_probs=206.5

Q ss_pred             ccHHHHHHHHHHHHHHHhccCeEEEEEeCCCCcHHHHHHHHHccCC-cEEEEEehHHHHHHHhhchhhcCCccccccccc
Q 021064            6 SKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGD-SVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPL   84 (318)
Q Consensus         6 k~~e~K~~~v~el~e~l~~y~~v~iv~~~~v~s~qlq~IR~~Lr~~-a~~~vgKNtL~r~AL~~~~~~~~~~~l~~L~~~   84 (318)
                      +.++||+++|++|++++++|++++|++|+||+++|+++||+.||+. ++|+|||||||++|++++.++++.+++++|.++
T Consensus         3 ~~~e~K~~~v~el~e~l~~~~~v~v~~~~gl~v~ql~~lR~~lr~~g~~~~v~KNtL~r~Al~~~~~~e~~~~l~~L~~~   82 (339)
T 3j21_k            3 HVAEWKKKEVEELANLIKSYPVVALVDVSSMPAYPLSQMRRLIRENNGLLRVSRNTLIELAIKKVAQELGKPELEKLINY   82 (339)
T ss_dssp             ---CCTTTHHHHHHHHHHHSSEEEEEECTTCCTTHHHHHHHHHHHTTEEEECCHHHHSCHHHHHHHSSCCCSSSSSSSCC
T ss_pred             ccHHHHHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHhcCCeEEEEEhHHHHHHHHhcChhhhccccHHHHHHH
Confidence            6789999999999999999999999999999999999999999976 899999999999999999877788889999999


Q ss_pred             ccCceEEEEecCChHHHHHHHHhhccCccccCCCCCCceEEECCCCCCCCCCch-hhhhhcCcceEEecceEEEecCeEE
Q 021064           85 LQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDPSQT-SFFQVLNIPTKINKGTVEIITPVEL  163 (318)
Q Consensus        85 L~G~~gLiFTn~dp~ev~k~l~~~k~~~~Ak~G~iA~~dVvIp~G~t~~~P~~~-s~fqkLgIptki~kG~I~I~~d~~v  163 (318)
                      |+|++||+|||+||.+++++|.+|++++|||+|++||+||+||+|||++.|+++ ++||+|||||+|++|+|+|.+|++|
T Consensus        83 L~G~~~l~Ft~~dp~~v~k~l~~~~~~~~Ar~GaiAp~dV~Ip~G~t~~~p~~~~~~fq~lgiptki~~G~I~i~~d~~v  162 (339)
T 3j21_k           83 IEGGAGILVTTMNPFKLYKFLQQNRQPAPAKPGAKVPKDVVIPAGPTSLAPGPIVGQMQAMGIPARIERGKVTIQKDTVV  162 (339)
T ss_dssp             CCTTEEEEEESSCHHHHHHHHHHSCCCCCCCTTCBCSSCEEECCEECSCCSSHHHHHHHHHTCCEEEETTEEEECSCEEE
T ss_pred             hcCCeEEEEECCCHHHHHHHHHHcCCcccccCCCcCCceEEecCCCCCCCCCccHHHHHHcCCCeEeccCeEEEccceEE
Confidence            999999999999999999999999999999999999999999999999999995 9999999999999999999999999


Q ss_pred             eecCcccChhHHHHHHHhCCCccccccceeeeeccCcccCCCcccCChHHHHHHHHHHHHHHHHHhhhcCCCCccchhhH
Q 021064          164 IRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHM  243 (318)
Q Consensus       164 ~k~Ge~v~~~qA~LL~~L~I~p~~~~l~l~~~~~~g~~~~~~~L~i~~e~~~~~~~~a~~~a~~ls~~~~ypt~~s~p~~  243 (318)
                      |++||+||++||+||++|||+|++|++.++++|++|.+|+|++|+||+|+|.++|++|+++|++||+++||||++|+||+
T Consensus       163 ~k~G~~v~~~~A~lL~~l~i~p~~~~l~l~~~~~~g~i~~~~~L~i~~e~~~~~~~~a~~~a~~lsl~~~ypT~~svp~~  242 (339)
T 3j21_k          163 LKAGEEITPELANILNALGIQPLEVGLDLLAVYEDGIIYTPDVLAIDESEYINMLQKAYMHAFNLAVNIAYPTPQTIEAI  242 (339)
T ss_dssp             ECTTSBCCHHHHHHHHHHTCCCSCCSCEEEEEEETTEEECHHHHCCCHHHHHHHC-------------------------
T ss_pred             EecCCCcCHHHHHHHHHcCCCcEEeeeeEEEEEeCCcEecHHhCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhhcCccCCChHhHHHHhhcCC
Q 021064          244 FVNAYKNVVAVALATEYSFPQADKVKEYLAVCI  276 (318)
Q Consensus       244 i~~a~~~a~ala~~~~~~~~~~~~~~~~l~~~~  276 (318)
                      |.|||+++++||++++|++|  +.++++|.++.
T Consensus       243 i~~a~k~~lala~~~~~~~~--e~~~~~l~ka~  273 (339)
T 3j21_k          243 IQKAFLNAKAVAVEAGYITK--ETISDIIGRAI  273 (339)
T ss_dssp             ---------------------------------
T ss_pred             HHHHHHHHHHHHhhcCCCCh--hhHHHHHHHHH
Confidence            99999999999999999999  56666666543

>1vq8_G Acidic ribosomal protein P0 homolog; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: j.84.1.1 PDB: 1k73_I* 1k8a_I* 1k9m_I* 1kc8_I* 1kd1_I* 1kqs_G* 1m1k_I* 1m90_I* 1n8r_I* 1nji_I* 1q7y_I* 1q81_I* 1q82_I* 1q86_I* 1qvf_G 1qvg_G 1s72_G* 1vq4_G* 1vq5_G* 1vq6_G* ...

Probab=100.00  E-value=7.1e-75  Score=559.47  Aligned_cols=267  Identities=26%  Similarity=0.460  Sum_probs=28.3

Q ss_pred             ccccHHHHHHHHHHHHHHHhccCeEEEEEeCCCCcHHHHHHHHHccCCcEEEEEehHHHHHHHhhchhhcCCcccccccc
Q 021064            4 KASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIP   83 (318)
Q Consensus         4 ~kk~~e~K~~~v~el~e~l~~y~~v~iv~~~~v~s~qlq~IR~~Lr~~a~~~vgKNtL~r~AL~~~~~~~~~~~l~~L~~   83 (318)
                      +++.++||+++|++|++++++|+.++|++|+||+++|+++||+.||+.++|+|+|||||++||+++..     +++.|.+
T Consensus         9 ~k~~~e~K~~~V~eL~e~l~~~~~v~vvdy~GLtv~ql~~LR~~lR~~~~~~V~KNTL~r~Al~~~~~-----~le~L~~   83 (348)
T 1vq8_G            9 TETIPEWKQEEVDAIVEMIESYESVGVVNIAGIPSRQLQDMRRDLHGTAELRVSRNTLLERALDDVDD-----GLEDLNG   83 (348)
T ss_dssp             ---CCHHHHHHHHHHHHHHHC---------------------------------CHHHHHHHHTC---------------
T ss_pred             ccccHHHHHHHHHHHHHHHHhCCEEEEEECCCCCHHHHHHHHHHHHhcceEEEeHHHHHHHHHHhCCc-----chHHHHH
Confidence            34678999999999999999999999999999999999999999998799999999999999998743     3889999


Q ss_pred             cccCceEEEEecCChHHHHHHHHhhccCccccCCCCCCceEEECCCCCCCCCCch-hhhhhcCcceEEecceEEEecCeE
Q 021064           84 LLQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDPSQT-SFFQVLNIPTKINKGTVEIITPVE  162 (318)
Q Consensus        84 ~L~G~~gLiFTn~dp~ev~k~l~~~k~~~~Ak~G~iA~~dVvIp~G~t~~~P~~~-s~fqkLgIptki~kG~I~I~~d~~  162 (318)
                      +|+|++||+||++||.+++|+|.+|++++|||+|.+||+||+||+|+|+++|+++ ++||+|||||+|++|+|+|.+|++
T Consensus        84 ~LkG~tal~Ft~~Dp~~vaK~l~~f~~~~pAr~GaiAp~dV~IpaG~t~~~P~~~~~~fq~LgIPTkI~kG~I~I~~d~~  163 (348)
T 1vq8_G           84 YITGQVGLIGTDDNPFSLFQELEASKTPAPIGAGEVAPNDIVIPEGDTGVDPGPFVGELQSVGADARIQEGSIQVLSDST  163 (348)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hccCCEEEEEeCCCHHHHHHHHHHhcccchhhcCCcCCceEEeCCCCCCCCCCchHHHHHHcCCCEEeccCceEecCceE
Confidence            9999999999999999999999999999999999999999999999999999996 999999999999999999999999


Q ss_pred             EeecCcccChhHHHHHHHhCCCccccccceeeeeccCcccCCCcccCChHHHHHHHHHHHHHHHHHhhhcCCCCccchhh
Q 021064          163 LIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPH  242 (318)
Q Consensus       163 v~k~Ge~v~~~qA~LL~~L~I~p~~~~l~l~~~~~~g~~~~~~~L~i~~e~~~~~~~~a~~~a~~ls~~~~ypt~~s~p~  242 (318)
                      ||++||+||++||+||++|||+|++|++.++++|++|.+|++++|+||+|+|.++|++|++++++||+++||||++|+||
T Consensus       164 v~k~G~~v~~~~A~LL~~LgI~p~~f~l~l~~~~d~g~~~~~~vL~i~~e~~~~~~~~~~~~~~~lsl~~~ypt~~s~~~  243 (348)
T 1vq8_G          164 VLDTGEEVSQELSNVLNELGIEPKEVGLDLRAVFADGVLFEPEELELDIDEYRSDIQAAAGRAFNLSVNADYPTATTAPT  243 (348)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EeeCCCCcCHHHHHHHHHcCCCceeeeeeeEEEEeCCcccCHHHccCCHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhhcCccCCChHhHHHHhhcCCC
Q 021064          243 MFVNAYKNVVAVALATEYSFPQADKVKEYLAVCIS  277 (318)
Q Consensus       243 ~i~~a~~~a~ala~~~~~~~~~~~~~~~~l~~~~~  277 (318)
                      +|.|||+++++||++++|+||  +.++++|+++.+
T Consensus       244 ~i~~a~~~~~ala~~~~~~~~--~~~~~il~kA~~  276 (348)
T 1vq8_G          244 MLQSDRGNAKSLALQAAIEDP--EVVPDLVSKADA  276 (348)
T ss_dssp             -----------------------------------
T ss_pred             HHHHHHHHHHHHHHhcCcCCh--hhHHHHHHHHHH
Confidence            999999999999999999999  678888887754

>3a1y_G Acidic ribosomal protein P0; stalk, helix SPIN, ribonucleoprotein; 2.13A {Pyrococcus horikoshii}

Probab=100.00  E-value=5.7e-73  Score=534.52  Aligned_cols=269  Identities=28%  Similarity=0.483  Sum_probs=189.5

Q ss_pred             cccHHHHHHHHHHHHHHHhccCeEEEEEeCCCCcHHHHHHHHHccCC-cEEEEEehHHHHHHHhhchhhcCCcccccccc
Q 021064            5 ASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGD-SVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIP   83 (318)
Q Consensus         5 kk~~e~K~~~v~el~e~l~~y~~v~iv~~~~v~s~qlq~IR~~Lr~~-a~~~vgKNtL~r~AL~~~~~~~~~~~l~~L~~   83 (318)
                      +++++||+++|++|++++++|+.++++||+|++++|+++||++||+. ++++|+|||||++|++++.++++.++++.|.+
T Consensus         2 ~~~~e~K~~~v~el~~~l~~~~~v~v~~~~gl~~~ql~~lR~~lr~~g~~~~v~KNtL~~~Al~~~~~~~~~~~~~~L~~   81 (284)
T 3a1y_G            2 AHVAEWKKKEVEELAKLIKSYPVIALVDVSSMPAYPLSQMRRLIRENGGLLRVSRNTLIELAIKKAAKELGKPELEKLVE   81 (284)
T ss_dssp             CSSCCCTTTHHHHHHHHHTTCSEEEEEECTTCCHHHHHHHHHHHHHTTEEEEECSSSSCCHHHHHHHTTCSCSSTTSSSC
T ss_pred             CCcHHHHHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHHhcCcEEEEeHHHHHHHHHhhCccccccccHHHHhh
Confidence            46799999999999999999999999999999999999999999975 89999999999999999987777788999999


Q ss_pred             cccCceEEEEecCChHHHHHHHHhhccCccccCCCCCCceEEECCCCCCCCCCch-hhhhhcCcceEEecceEEEecCeE
Q 021064           84 LLQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDPSQT-SFFQVLNIPTKINKGTVEIITPVE  162 (318)
Q Consensus        84 ~L~G~~gLiFTn~dp~ev~k~l~~~k~~~~Ak~G~iA~~dVvIp~G~t~~~P~~~-s~fqkLgIptki~kG~I~I~~d~~  162 (318)
                      +|+|++||+||++||.+++++|.+|+.++|||+|.+|++||+||+|+|++.|+++ ++||+|||||++++|+|+|.+|++
T Consensus        82 ~l~G~~al~Ft~~dp~~vak~l~~f~~~~~ar~Gaia~~dv~ip~g~~~~~p~~~~~~l~~LgIptki~~g~I~i~~d~~  161 (284)
T 3a1y_G           82 YIDRGAGILVTNMNPFKLYKFLQQNRQPAPAKPGAVVPKDVVVPAGPTPLAPGPIVGQMQALGIPARIEKGKVTIQKDTT  161 (284)
T ss_dssp             CCCTTEEEEEESSCHHHHHHHHHHCCCC----------------------------------------------------
T ss_pred             hcCCCEEEEEECCCHHHHHHHHHHhcchhhhhcCCccceeEEecCCCCCCCCcchHHHHHHCCCCeEEecCeeEeecceE
Confidence            9999999999999999999999999999999999999999999999999988875 999999999999999999999999


Q ss_pred             EeecCcccChhHHHHHHHhCCCccccccceeeeeccCcccCCCcccCChHHHHHHHHHHHHHHHHHhhhcCCCCccchhh
Q 021064          163 LIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPH  242 (318)
Q Consensus       163 v~k~Ge~v~~~qA~LL~~L~I~p~~~~l~l~~~~~~g~~~~~~~L~i~~e~~~~~~~~a~~~a~~ls~~~~ypt~~s~p~  242 (318)
                      ||++|++|+++||+||++|||+|++|+++++++|++|.+|++++|+||+|++...|++|+++|++||+++||||++|+||
T Consensus       162 v~~~G~~l~~~~a~lL~~L~i~~~~~~l~i~~~~~~~~~~~~~vl~i~~e~~~~~~~~a~~~a~~lsl~~~~pt~~s~~~  241 (284)
T 3a1y_G          162 VLKAGEVITPELANILNALGIQPLEVGLDVLAVYEDGIVYTPDVLAIDEQEYIDMLQKAYMHAFNLAVNIAYPTPETIEA  241 (284)
T ss_dssp             ---------------------CCCCCCCEEEEEEETTEEECHHHHSCCHHHHHHHHHHHHHHHHHHHHHHTCCCTTTHHH
T ss_pred             EEecCCCcCHHHHHHHHHcCCCHHHHHHHHHHHhhccccCCHHHccCCHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhhcCccCCChHhHHHHhhcC
Q 021064          243 MFVNAYKNVVAVALATEYSFPQADKVKEYLAVC  275 (318)
Q Consensus       243 ~i~~a~~~a~ala~~~~~~~~~~~~~~~~l~~~  275 (318)
                      +|.|||++++|||++++|+||  +.++++|+++
T Consensus       242 ~i~ka~~~~~ala~~~~~~~~--~~~~~~~~ka  272 (284)
T 3a1y_G          242 IIQKAFLNAKTVAIEAGYITK--ETIQDIIGRA  272 (284)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCT--TTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCCCh--hhHHHHHHHH
Confidence            999999999999999999999  5777777654

>3jsy_A Acidic ribosomal protein P0 homolog; ribonucleoprotein; 1.60A {Methanocaldococcus jannaschii}

Probab=100.00  E-value=1.1e-65  Score=466.69  Aligned_cols=210  Identities=30%  Similarity=0.485  Sum_probs=204.8

Q ss_pred             HHHHHHHHHHHHHHHhccCeEEEEEeCCCCcHHHHHHHHHccCCcEEEEEehHHHHHHHhhchhhcCCcccccccccccC
Q 021064            8 AEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQG   87 (318)
Q Consensus         8 ~e~K~~~v~el~e~l~~y~~v~iv~~~~v~s~qlq~IR~~Lr~~a~~~vgKNtL~r~AL~~~~~~~~~~~l~~L~~~L~G   87 (318)
                      ++||+++|++|++++++|++++++||+|++++|+++||++||+.++++|||||||++|++++.++++.+++++|.++|+|
T Consensus         2 ~e~K~~~v~el~e~l~~~~~v~v~~~~gl~~~ql~~lR~~lr~~~~~~v~KNtL~r~Al~~~~~~e~~~~~~~L~~~l~G   81 (213)
T 3jsy_A            2 APWKIEEVKTLKGLIKSKPVVAIVDMMDVPAPQLQEIRDKIRDKVKLRMSRNTLIIRALKEAAEELNNPKLAELANYVER   81 (213)
T ss_dssp             CHHHHHHHHHHHHHHHHSSEEEEEECCSCCHHHHHHHHHHHTTTEEEEECCHHHHHHHHHHHHHHTTCGGGGGGGGGCCS
T ss_pred             chHHHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHhCCCEEEEEeHHHHHHHHhhchhhhcccchhHHHHhCcC
Confidence            48999999999999999999999999999999999999999988899999999999999999888888889999999999


Q ss_pred             ceEEEEecCChHHHHHHHHhhccCccccCCCCCCceEEECCCCCCCCCCc-hhhhhhcCcceEEecceEEEecCeEEeec
Q 021064           88 NVGLIFTKGDLKEVKEEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRK  166 (318)
Q Consensus        88 ~~gLiFTn~dp~ev~k~l~~~k~~~~Ak~G~iA~~dVvIp~G~t~~~P~~-~s~fqkLgIptki~kG~I~I~~d~~v~k~  166 (318)
                      ++||+|||+||.+++++|.+|++++|||+|++||+||+||+|||++.|++ +++||+|||||+|++|+|+|.+|++||++
T Consensus        82 ~~~l~Ft~~dp~~v~k~l~~~~~~~~Ar~GaiAp~dV~ip~G~t~~~p~~~~~~~q~lgiptki~~G~I~i~~d~~v~k~  161 (213)
T 3jsy_A           82 GAAILVTDMNPFKLYKLLEENKSPAPVRGGQIAPCDIKVEKGSTGMPPGPFLGELKSVGIPAAIEKGKIAIKEDKVVVKK  161 (213)
T ss_dssp             SEEEEEESSCHHHHHHHHHHSCEEECCCTTCBCSSCEEECSEEEEECSSTHHHHHHHTTCCEEEETTEEEECSCEEEECT
T ss_pred             CeEEEEeCCCHHHHHHHHHHcCCcccccCCCcCCceEEECCCCCCCCCCccHHHHHHcCCceEeecCeEEEccceEEEec
Confidence            99999999999999999999999999999999999999999999999999 59999999999999999999999999999


Q ss_pred             CcccChhHHHHHHHhCCCccccccceeeeeccCcccCCCcccCChHHHHHH
Q 021064          167 GDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEK  217 (318)
Q Consensus       167 Ge~v~~~qA~LL~~L~I~p~~~~l~l~~~~~~g~~~~~~~L~i~~e~~~~~  217 (318)
                      ||+||++||+||++|||+|++|++.++++||+|.+|+|++|+||+|+|.++
T Consensus       162 G~~v~~~~A~lL~~l~i~p~~~~l~l~~~~~~g~i~~~~~L~i~~e~~~~~  212 (213)
T 3jsy_A          162 GEVVSPKLAAVLDRLGIKPIKVGLNILAVYEDGIIYTPDVLKVDEEKLLAD  212 (213)
T ss_dssp             TSBCCHHHHHHHHHTTCCCEEESCEEEEEEETTEEECHHHHHHHCSCTTSC
T ss_pred             CCCcCHHHHHHHHHcCCCcEEEEEEEEEEEeCCceeCHHHcccCHHHHhhh
Confidence            999999999999999999999999999999999999999999999988754

>1zav_A 50S ribosomal protein L10; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} SCOP: d.58.62.1 PDB: 1zaw_A 1zax_A

Probab=99.84  E-value=4.7e-21  Score=169.28  Aligned_cols=97  Identities=16%  Similarity=0.266  Sum_probs=91.9

Q ss_pred             cHHHHHHHHHHHHHHHhccCeEEEEEeCCCCcHHHHHHHHHccC----CcEEEEEehHHHHHHHhhchhhcCCccccccc
Q 021064            7 KAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRG----DSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLI   82 (318)
Q Consensus         7 ~~e~K~~~v~el~e~l~~y~~v~iv~~~~v~s~qlq~IR~~Lr~----~a~~~vgKNtL~r~AL~~~~~~~~~~~l~~L~   82 (318)
                      ++++|+++|++|++.+++|+.+++++|+|++++|+++||++||+    +++++|+|||||++|++++.       ++.|.
T Consensus         4 ~~~~K~~~v~el~~~l~~~~~v~v~~~~gltv~q~~~LR~~lr~~~~~g~~~~V~KNtL~~~Al~~~~-------~~~L~   76 (180)
T 1zav_A            4 TRQQKELIVKEMSEIFKKTSLILFADFLGFTVADLTELRSRLREKYGDGARFRVVKNTLLNLALKNAE-------YEGYE   76 (180)
T ss_dssp             CHHHHHHHHHHHHHHHTTCSEEEEECCTTCCHHHHHHHHHHHHHHHTTSEEEEEECHHHHHHHHHHTT-------CCSCG
T ss_pred             CHHHHHHHHHHHHHHHHhCCEEEEEEeCCCCHHHHHHHHHHHHhcccCCeEEEEehHHHHHHHHccCC-------hhhHH
Confidence            48999999999999999999999999999999999999999996    48999999999999999874       89999


Q ss_pred             ccccCceEEEEec-CChHHHHHHHHhhcc
Q 021064           83 PLLQGNVGLIFTK-GDLKEVKEEVAKYKV  110 (318)
Q Consensus        83 ~~L~G~~gLiFTn-~dp~ev~k~l~~~k~  110 (318)
                      ++|+|++|++||+ +||.+++++|.+|..
T Consensus        77 ~~l~G~~a~~fs~~~dp~~~ak~l~~f~k  105 (180)
T 1zav_A           77 EFLKGPTAVLYVTEGDPVEAVKIIYNFYK  105 (180)
T ss_dssp             GGCSSSEEEEEESSSCTHHHHHHHHHHHH
T ss_pred             HhCcCCEEEEEecCCCHHHHHHHHHHHHH
Confidence            9999999999999 999999999998754

>3sgf_H 50S ribosomal protein L10; typeii release factor binding with ribosome, ribosome-antibi complex; 3.20A {Escherichia coli} PDB: 3uos_H 3j12_J* 3j0w_J* 3j0y_J* 3j11_J* 3j0t_J* 3j14_J*

Probab=99.81  E-value=8.8e-22  Score=171.84  Aligned_cols=98  Identities=14%  Similarity=0.200  Sum_probs=92.5

Q ss_pred             ccHHHHHHHHHHHHHHHhccCeEEEEEeCCCCcHHHHHHHHHccC-CcEEEEEehHHHHHHHhhchhhcCCccccccccc
Q 021064            6 SKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRG-DSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPL   84 (318)
Q Consensus         6 k~~e~K~~~v~el~e~l~~y~~v~iv~~~~v~s~qlq~IR~~Lr~-~a~~~vgKNtL~r~AL~~~~~~~~~~~l~~L~~~   84 (318)
                      .++++|+++|++|++.+++|+.++++||+|++++|+++||++||+ +++++|+||||+++|++++.       ++.|.++
T Consensus         3 ~~r~~K~~~V~el~~~l~~~~~v~v~~~~gltv~q~~~LR~~lr~~g~~~~V~KNtL~~~Al~~~~-------~~~L~~~   75 (165)
T 3sgf_H            3 LNLQDKQAIVAEVSEVAKGALSAVVADSRGVTVDKMTELRKAGREAGVYMRVVRNTLLRRAVEGTP-------FECLKDA   75 (165)
T ss_dssp             SHHHHHHHHHHHHHHHHSCSCEEECCCTTCCHHHHHHHTTTTTSSCCSSEECCCCTTTTTTTTTCT-------TTCTTCS
T ss_pred             CCHHHHHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHHHcCcEEEEECcHHHHHHHhcCC-------cchhHHh
Confidence            679999999999999999999999999999999999999999997 58999999999999999864       8999999


Q ss_pred             ccCceEEEEecCChHHHHHHHHhhcc
Q 021064           85 LQGNVGLIFTKGDLKEVKEEVAKYKV  110 (318)
Q Consensus        85 L~G~~gLiFTn~dp~ev~k~l~~~k~  110 (318)
                      |+|+++++||++||.+++|++.+|..
T Consensus        76 l~G~tai~fs~~dp~~~aK~l~~f~K  101 (165)
T 3sgf_H           76 FVGPTLIAYSMEHPGAAARLFKEFAK  101 (165)
T ss_dssp             TTCCSCCCEEEECSSCSHHHHHHHHH
T ss_pred             CcCCEEEEEeCCCHHHHHHHHHHHHH
Confidence            99999999999999999999987743

>3a1y_G Acidic ribosomal protein P0; stalk, helix SPIN, ribonucleoprotein; 2.13A {Pyrococcus horikoshii}

Probab=99.08  E-value=2.2e-10  Score=107.60  Aligned_cols=230  Identities=10%  Similarity=0.107  Sum_probs=123.1

Q ss_pred             HHHHHHHHHHHhccCeEEEEEeCCCCcHH------------HHHHHHHccCCcEEEEEehHH--HHHHHhhchhhcCC-c
Q 021064           12 IAYDAKLCQLLEEYTQILVAAADNVGSNQ------------LQNIRRGLRGDSVVLMGKNTM--MKRTIRMHAEKTGN-T   76 (318)
Q Consensus        12 ~~~v~el~e~l~~y~~v~iv~~~~v~s~q------------lq~IR~~Lr~~a~~~vgKNtL--~r~AL~~~~~~~~~-~   76 (318)
                      .+.+.+||..+.+...-+.+-=..+-..-            +..|-..|+|..-+.+.+...  +.+.+.+.....+. .
T Consensus        35 ~~ql~~lR~~lr~~g~~~~v~KNtL~~~Al~~~~~~~~~~~~~~L~~~l~G~~al~Ft~~dp~~vak~l~~f~~~~~ar~  114 (284)
T 3a1y_G           35 AYPLSQMRRLIRENGGLLRVSRNTLIELAIKKAAKELGKPELEKLVEYIDRGAGILVTNMNPFKLYKFLQQNRQPAPAKP  114 (284)
T ss_dssp             HHHHHHHHHHHHHTTEEEEECSSSSCCHHHHHHHTTCSCSSTTSSSCCCCTTEEEEEESSCHHHHHHHHHHCCCC-----
T ss_pred             HHHHHHHHHHHHhcCcEEEEeHHHHHHHHHhhCccccccccHHHHhhhcCCCEEEEEECCCHHHHHHHHHHhcchhhhhc
Confidence            35677888888877555555433333333            333444577776777775443  33445443211111 0


Q ss_pred             c-cccccc-cccCceEEEEecCChHHHHHHHHhhccCccccCCC--CCCceEEECCCCCCCCCCchhhhhhcCcceEEec
Q 021064           77 A-FLNLIP-LLQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGL--VAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINK  152 (318)
Q Consensus        77 ~-l~~L~~-~L~G~~gLiFTn~dp~ev~k~l~~~k~~~~Ak~G~--iA~~dVvIp~G~t~~~P~~~s~fqkLgIptki~k  152 (318)
                      | +..-+- .-.|++     ...|.++...|.+...|.-...|.  +..+..++.+|.. ++|++...|+.|||...--+
T Consensus       115 Gaia~~dv~ip~g~~-----~~~p~~~~~~l~~LgIptki~~g~I~i~~d~~v~~~G~~-l~~~~a~lL~~L~i~~~~~~  188 (284)
T 3a1y_G          115 GAVVPKDVVVPAGPT-----PLAPGPIVGQMQALGIPARIEKGKVTIQKDTTVLKAGEV-ITPELANILNALGIQPLEVG  188 (284)
T ss_dssp             --------------------------------------------------------------------------CCCCCC
T ss_pred             CCccceeEEecCCCC-----CCCCcchHHHHHHCCCCeEEecCeeEeecceEEEecCCC-cCHHHHHHHHHcCCCHHHHH
Confidence            0 000000 113443     456888899999999999999998  5567789999998 99999999999999998777


Q ss_pred             ceEEEecCeEEeecCcccChhHHHHHHHhCCCccccccceeeeeccCcccCCCcccCChHHHHHHHHHHHHHHHHHhhhc
Q 021064          153 GTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAI  232 (318)
Q Consensus       153 G~I~I~~d~~v~k~Ge~v~~~qA~LL~~L~I~p~~~~l~l~~~~~~g~~~~~~~L~i~~e~~~~~~~~a~~~a~~ls~~~  232 (318)
                      -.|     ..+...|...+++..      .|.+.++...+..++.+...++.+.-.+|++.+...+.+|+.++++||+++
T Consensus       189 l~i-----~~~~~~~~~~~~~vl------~i~~e~~~~~~~~a~~~a~~lsl~~~~pt~~s~~~~i~ka~~~~~ala~~~  257 (284)
T 3a1y_G          189 LDV-----LAVYEDGIVYTPDVL------AIDEQEYIDMLQKAYMHAFNLAVNIAYPTPETIEAIIQKAFLNAKTVAIEA  257 (284)
T ss_dssp             CEE-----EEEEETTEEECHHHH------SCCHHHHHHHHHHHHHHHHHHHHHHTCCCTTTHHHHHHHHHHHHHHHHHHT
T ss_pred             HHH-----HHHhhccccCCHHHc------cCCHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence            777     466778888888654      489999999999999888888888889999999999999999999999999


Q ss_pred             CCCCccchhhHHHHHHHHHHhhhhhc
Q 021064          233 SYPTLAAAPHMFVNAYKNVVAVALAT  258 (318)
Q Consensus       233 ~ypt~~s~p~~i~~a~~~a~ala~~~  258 (318)
                      +|++++++|.+|++|+.+|+|||...
T Consensus       258 ~~~~~~~~~~~~~ka~~~~~~l~~~~  283 (284)
T 3a1y_G          258 GYITKETIQDIIGRAFRAMLLLAQQL  283 (284)
T ss_dssp             TCCCTTTHHHHHHHHHHHHHHHHTTC
T ss_pred             CCCChhhHHHHHHHHHHHHHHHHhhC
Confidence            99999999999999999999998754

>1vq8_G Acidic ribosomal protein P0 homolog; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: j.84.1.1 PDB: 1k73_I* 1k8a_I* 1k9m_I* 1kc8_I* 1kd1_I* 1kqs_G* 1m1k_I* 1m90_I* 1n8r_I* 1nji_I* 1q7y_I* 1q81_I* 1q82_I* 1q86_I* 1qvf_G 1qvg_G 1s72_G* 1vq4_G* 1vq5_G* 1vq6_G* ...

Probab=99.04  E-value=2.2e-11  Score=117.40  Aligned_cols=153  Identities=16%  Similarity=0.096  Sum_probs=0.0

Q ss_pred             cCChHHHHHHHHhhccCccccCCC--CCCceEEECCCCCCCCCCchhhhhhcCcceEEecceEEEecCeEEeecCcccCh
Q 021064           95 KGDLKEVKEEVAKYKVGAPARVGL--VAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGS  172 (318)
Q Consensus        95 n~dp~ev~k~l~~~k~~~~Ak~G~--iA~~dVvIp~G~t~~~P~~~s~fqkLgIptki~kG~I~I~~d~~v~k~Ge~v~~  172 (318)
                      ..+|..+...|.+.+.|+...-|.  |..+.+++++|.. ++|++...|+.|||...--+-+|     ..+...|...++
T Consensus       132 ~~~P~~~~~~fq~LgIPTkI~kG~I~I~~d~~v~k~G~~-v~~~~A~LL~~LgI~p~~f~l~l-----~~~~d~g~~~~~  205 (348)
T 1vq8_G          132 GVDPGPFVGELQSVGADARIQEGSIQVLSDSTVLDTGEE-VSQELSNVLNELGIEPKEVGLDL-----RAVFADGVLFEP  205 (348)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCCCchHHHHHHcCCCEEeccCceEecCceEEeeCCCC-cCHHHHHHHHHcCCCceeeeeee-----EEEEeCCcccCH
Confidence            456888889999999999999998  6777889999999 99999999999999998777777     355566777777


Q ss_pred             hHHHHHHHhCCCccccccceeeeeccCcccCCCcccCChHHHHHHHHHHHHHHHHHhhhcCCCCccchhhHHHHHHHHHH
Q 021064          173 SEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVV  252 (318)
Q Consensus       173 ~qA~LL~~L~I~p~~~~l~l~~~~~~g~~~~~~~L~i~~e~~~~~~~~a~~~a~~ls~~~~ypt~~s~p~~i~~a~~~a~  252 (318)
                      +.      |+|....|.-++...+.+...++.+.-++|.+.+.-.+.+|++++++||++++|++++++|.+|.+|+.+|+
T Consensus       206 ~v------L~i~~e~~~~~~~~~~~~~~~lsl~~~ypt~~s~~~~i~~a~~~~~ala~~~~~~~~~~~~~il~kA~~~~~  279 (348)
T 1vq8_G          206 EE------LELDIDEYRSDIQAAAGRAFNLSVNADYPTATTAPTMLQSDRGNAKSLALQAAIEDPEVVPDLVSKADAQVR  279 (348)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HH------ccCCHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHhcCcCChhhHHHHHHHHHHHHH
Confidence            54      569999999999999999888999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhcC
Q 021064          253 AVALATE  259 (318)
Q Consensus       253 ala~~~~  259 (318)
                      |||...+
T Consensus       280 ala~~~~  286 (348)
T 1vq8_G          280 ALASQID  286 (348)
T ss_dssp             -------
T ss_pred             HHHHhcC
Confidence            9998875

>3j21_k Acidic ribosomal protein P0 homolog; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=99.01  E-value=7.4e-11  Score=113.44  Aligned_cols=227  Identities=13%  Similarity=0.139  Sum_probs=111.3

Q ss_pred             HHHHHHHHHHhccCeEEEEEeCCCCcHH------------HHHHHHHccCCcEEEEEehHHH--HHHHhhchhhcCC-cc
Q 021064           13 AYDAKLCQLLEEYTQILVAAADNVGSNQ------------LQNIRRGLRGDSVVLMGKNTMM--KRTIRMHAEKTGN-TA   77 (318)
Q Consensus        13 ~~v~el~e~l~~y~~v~iv~~~~v~s~q------------lq~IR~~Lr~~a~~~vgKNtL~--r~AL~~~~~~~~~-~~   77 (318)
                      ..+.+||..+.+....+++.=..|-..-            +.+|-..|+|..-+.|.+....  ++.|.+.....+. .|
T Consensus        36 ~ql~~lR~~lr~~g~~~~v~KNtL~r~Al~~~~~~e~~~~l~~L~~~L~G~~~l~Ft~~dp~~v~k~l~~~~~~~~Ar~G  115 (339)
T 3j21_k           36 YPLSQMRRLIRENNGLLRVSRNTLIELAIKKVAQELGKPELEKLINYIEGGAGILVTTMNPFKLYKFLQQNRQPAPAKPG  115 (339)
T ss_dssp             THHHHHHHHHHHTTEEEECCHHHHSCHHHHHHHSSCCCSSSSSSSCCCCTTEEEEEESSCHHHHHHHHHHSCCCCCCCTT
T ss_pred             HHHHHHHHHHhcCCeEEEEEhHHHHHHHHhcChhhhccccHHHHHHHhcCCeEEEEECCCHHHHHHHHHHcCCcccccCC
Confidence            3567788888876455544222222222            2333445677777778766543  3344433211111 00


Q ss_pred             ----cccccccccCceEEEEecCChHHHHHHHHhhccCccccCCC--CCCceEEECCCCCCCCCCchhhhhhcCcceEEe
Q 021064           78 ----FLNLIPLLQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGL--VAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKIN  151 (318)
Q Consensus        78 ----l~~L~~~L~G~~gLiFTn~dp~ev~k~l~~~k~~~~Ak~G~--iA~~dVvIp~G~t~~~P~~~s~fqkLgIptki~  151 (318)
                          .+-..|  .|+|     ...|..+...|.+.+.|+...-|.  |..+.+++++|.. ++|++...|+.|||...--
T Consensus       116 aiAp~dV~Ip--~G~t-----~~~p~~~~~~fq~lgiptki~~G~I~i~~d~~v~k~G~~-v~~~~A~lL~~l~i~p~~~  187 (339)
T 3j21_k          116 AKVPKDVVIP--AGPT-----SLAPGPIVGQMQAMGIPARIERGKVTIQKDTVVLKAGEE-ITPELANILNALGIQPLEV  187 (339)
T ss_dssp             CBCSSCEEEC--CEEC-----SCCSSHHHHHHHHHTCCEEEETTEEEECSCEEEECTTSB-CCHHHHHHHHHHTCCCSCC
T ss_pred             CcCCceEEec--CCCC-----CCCCCccHHHHHHcCCCeEeccCeEEEccceEEEecCCC-cCHHHHHHHHHcCCCcEEe
Confidence                111111  4555     668999899999999999999999  7777889999999 9999999999999999888


Q ss_pred             cceEEEecCeEEeecCcccChhHHHHHHHhCCCccccccceeeeeccCcccCCCcccCChHHHHHHHHHHHHHHHHHhhh
Q 021064          152 KGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALA  231 (318)
Q Consensus       152 kG~I~I~~d~~v~k~Ge~v~~~qA~LL~~L~I~p~~~~l~l~~~~~~g~~~~~~~L~i~~e~~~~~~~~a~~~a~~ls~~  231 (318)
                      +-+|     ..+...|...+++      .|+|....|.-.+..++.+...++.+.-++|++.+...+.+|++++++||++
T Consensus       188 ~l~l-----~~~~~~g~i~~~~------~L~i~~e~~~~~~~~a~~~a~~lsl~~~ypT~~svp~~i~~a~k~~lala~~  256 (339)
T 3j21_k          188 GLDL-----LAVYEDGIIYTPD------VLAIDESEYINMLQKAYMHAFNLAVNIAYPTPQTIEAIIQKAFLNAKAVAVE  256 (339)
T ss_dssp             SCEE-----EEEEETTEEECHH------HHCCCHHHHHHHC---------------------------------------
T ss_pred             eeeE-----EEEEeCCcEecHH------hCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence            8887     5677788888886      4679999999999999999988999999999999999999999999999999


Q ss_pred             cCCCCccchhhHHHHHHHHHHhhhhhc
Q 021064          232 ISYPTLAAAPHMFVNAYKNVVAVALAT  258 (318)
Q Consensus       232 ~~ypt~~s~p~~i~~a~~~a~ala~~~  258 (318)
                      ++|++++|++.+|.+|++++++++...
T Consensus       257 ~~~~~~e~~~~~l~ka~~~~~alaa~~  283 (339)
T 3j21_k          257 AGYITKETISDIIGRAIRAMLLLAQQL  283 (339)
T ss_dssp             ---------------------------
T ss_pred             cCCCChhhHHHHHHHHHHHHHHHHhhh
Confidence            999999999999999999999988754

>3u5i_q A0, L10E, 60S acidic ribosomal protein P0; translation, ribosome, ribosomal R ribosomal protein, STM1; 3.00A {Saccharomyces cerevisiae} PDB: 4b6a_q 3izc_s 3izs_s 3j16_G* 3o5h_M 3jyw_8

Probab=98.28  E-value=1.1e-07  Score=90.46  Aligned_cols=215  Identities=13%  Similarity=0.079  Sum_probs=65.7

Q ss_pred             HHHHHHHHHHHhccCeEEEEE-------eCCCC--cHHHHHHHHHccCCcEEEEEehHHHH--HHHhhchhhcCC-cc--
Q 021064           12 IAYDAKLCQLLEEYTQILVAA-------ADNVG--SNQLQNIRRGLRGDSVVLMGKNTMMK--RTIRMHAEKTGN-TA--   77 (318)
Q Consensus        12 ~~~v~el~e~l~~y~~v~iv~-------~~~v~--s~qlq~IR~~Lr~~a~~~vgKNtL~r--~AL~~~~~~~~~-~~--   77 (318)
                      .+.+.+||..+.+...+++..       +++..  ...+.+|-..|+|..-+.+.+.....  +.|.+.....+. .|  
T Consensus        35 v~ql~~LR~~lR~~~~~~V~KNTL~r~Al~~~~~~~~~le~L~~~L~G~~gl~Ft~~dp~~v~k~l~~~k~~~pAr~Gai  114 (312)
T 3u5i_q           35 SQQMHEVRKELRGRAVVLMGKNTMVRRAIRGFLSDLPDFEKLLPFVKGNVGFVFTNEPLTEIKNVIVSNRVAAPARAGAV  114 (312)
T ss_dssp             HHHHHHHHHHHSSSCEEEECCHHHHHHHHHTTSSSSCGGGGTGGGCCSSEEEEEESSCHHHHHHHHHTSSCCC-------
T ss_pred             HHHHHHHHHHHhcCceEEEeehHHHHHHHhhCcccccChHHHHHhccCCEEEEEECCCHHHHHHHHHhccCcccccCCCc
Confidence            356778888888766544321       11211  12455666778887777777655433  334432211111 00  


Q ss_pred             --cccccccccCceEEEEecCChHHHHHHHHhhccCccccCCC--CCCceEEECCCCCCCCCCchhhhhhcCcceEEecc
Q 021064           78 --FLNLIPLLQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGL--VAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKG  153 (318)
Q Consensus        78 --l~~L~~~L~G~~gLiFTn~dp~ev~k~l~~~k~~~~Ak~G~--iA~~dVvIp~G~t~~~P~~~s~fqkLgIptki~kG  153 (318)
                        .+-..+  .|+|+     .+|.. ...|.+.+.|+...-|.  |..+.+++++|.. ++|++...|+.|||...--+-
T Consensus       115 Ap~dV~Ip--~G~tg-----~~P~~-~s~fq~Lgiptki~kG~I~I~~d~~v~k~G~~-v~~~~A~lL~~l~i~p~~~~l  185 (312)
T 3u5i_q          115 APEDIWVR--AVNTG-----MEPGK-TSFFQALGVPTKIARGTIEIVSDVKVVDAGNK-VGQSEASLLNLLNISPFTFGL  185 (312)
T ss_dssp             ------------------------------------------------------------------------------CC
T ss_pred             CCceEEEC--CCCCC-----CCCcc-hHHHHHcCCCeEeeCCEEEEccceEEEeCCCC-cCHHHHHHHHHcCcCcEEEEE
Confidence              111122  57775     46665 67799999999999999  5677789999999 999999999999999998888


Q ss_pred             eEEEecCeEEeecCcccChhHHHHHHHhCCCccccccceeeeeccCcccCCCcccCChHHHHHHHHHHHHHHHHHhhhcC
Q 021064          154 TVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAIS  233 (318)
Q Consensus       154 ~I~I~~d~~v~k~Ge~v~~~qA~LL~~L~I~p~~~~l~l~~~~~~g~~~~~~~L~i~~e~~~~~~~~a~~~a~~ls~~~~  233 (318)
                      +|     ..+...|...+++.      |+|...+|.-++...+.+...++.++-++|.+.+.-.+.+|++++++||++++
T Consensus       186 ~l-----~~~~d~g~i~~~~~------L~i~~e~~~~~~~~~~~~~~~lsl~~~ypt~~s~~~~i~~a~k~~~a~a~~~~  254 (312)
T 3u5i_q          186 TV-----VQVYDNGQVFPXXX------XXXXXXXXXXXXXXXXXXXXSISLAIGYPTLPSVGHTLINNYKDLLAVAIAAS  254 (312)
T ss_dssp             EE-----EEEEESSCCCCSTT------TSCCSSTTTHHHHHHHTTCC---------------------------------
T ss_pred             EE-----EEEecCCceecccc------ccccccccccccccchhhHhhhHHhhCCCcHHHHHHHHHHHHHHHHHHHHhhc
Confidence            88     56777888888874      67999999999999999988899999999999999999999999999999999


Q ss_pred             CCCccc--hhhHHHH
Q 021064          234 YPTLAA--APHMFVN  246 (318)
Q Consensus       234 ypt~~s--~p~~i~~  246 (318)
                      |..+++  +...+.+
T Consensus       255 ~~~~~~~~ik~~la~  269 (312)
T 3u5i_q          255 YHYPEIEDLVDRIEN  269 (312)
T ss_dssp             ---------------
T ss_pred             ccCccchhHHHHHhC
Confidence            977754  5555544

>2zkr_g 60S acidic ribosomal protein P0; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}

Probab=97.77  E-value=4.5e-06  Score=79.51  Aligned_cols=188  Identities=12%  Similarity=0.141  Sum_probs=6.5

Q ss_pred             HHHHHHHHccCCcEEEEEehHHHH--HHHhhchhhcCC-cc----cccccccccCceEEEEecCChHHHHHHHHhhccCc
Q 021064           40 QLQNIRRGLRGDSVVLMGKNTMMK--RTIRMHAEKTGN-TA----FLNLIPLLQGNVGLIFTKGDLKEVKEEVAKYKVGA  112 (318)
Q Consensus        40 qlq~IR~~Lr~~a~~~vgKNtL~r--~AL~~~~~~~~~-~~----l~~L~~~L~G~~gLiFTn~dp~ev~k~l~~~k~~~  112 (318)
                      .+..|-..|+|..-+.+.+.....  +.+.+.....+. .|    .+-..+  .|+|+     .+|.. ...|.+...|+
T Consensus        74 ~~e~L~~~L~G~~al~Ft~~Dp~~vaK~l~~f~~~~pAr~GaiAp~dV~Ip--~G~t~-----~~p~~-~~~fq~LgipT  145 (317)
T 2zkr_g           74 ALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVP--AQNTG-----LGPEK-TSFFQALGITT  145 (317)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             chhhhhhccCCCEEEEEECCCHHHHHHHHHHhCccchhccCCcCCceEEeC--CCCCC-----CCCcc-hHHHHHcCCCe
Confidence            566677777776666555443322  222221111110 00    112222  56654     45666 57899999999


Q ss_pred             cccCCC--CCCceEEECCCCCCCCCCchhhhhhcCcceEEecceEEEecCeEEeecCcccChhHHHHHHHhCCCcccccc
Q 021064          113 PARVGL--VAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGL  190 (318)
Q Consensus       113 ~Ak~G~--iA~~dVvIp~G~t~~~P~~~s~fqkLgIptki~kG~I~I~~d~~v~k~Ge~v~~~qA~LL~~L~I~p~~~~l  190 (318)
                      ...-|.  |..+.+++++|.. ++|++...|+.|||...--+-+|     ..+...|...+++.      |+|...+|.-
T Consensus       146 kI~kG~I~i~~d~~v~k~G~~-v~~~~A~lL~~l~i~p~~~~l~l-----~~~~d~g~~~~~~~------L~i~~e~~~~  213 (317)
T 2zkr_g          146 KISRGTIEILSDVQLIKTGDK-VGASEATLLNMLNISPFSFGLVI-----QQVFDNGSIYNPEV------LDITEETLHS  213 (317)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EeeCCeEEEecceEEecCCCC-cCHHHHHHHHHcCCCceeeeeee-----eEEEecCcccchHh------ccCCHHHHHH
Confidence            999998  7777889999999 99999999999999998777777     45666777778765      5699999999


Q ss_pred             ceeeeeccCcccCCCcccCChHHHHHHHHHHHHHHHHHhhhcCC--CCccchhhHHHHH
Q 021064          191 VVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISY--PTLAAAPHMFVNA  247 (318)
Q Consensus       191 ~l~~~~~~g~~~~~~~L~i~~e~~~~~~~~a~~~a~~ls~~~~y--pt~~s~p~~i~~a  247 (318)
                      ++...+.+-..++.+.-++|.+.+.-.+.+|++++++||++++|  +..+.+...|.+-
T Consensus       214 ~~~~~~~~~~~lsl~~~~pt~~s~~~~i~~a~~~~~ala~~~~~~~~ea~~vk~~l~~~  272 (317)
T 2zkr_g          214 RFLEGVRNVASVCLQIGYPTVASVPHSIINGYKRVLALSVETDYTFPLAEKVKAFLADP  272 (317)
T ss_dssp             -----------------------------------------------CHHHHHTTTHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhhcccChhhhhhHHHHHhcc
Confidence            99999999888999999999999999999999999999999997  4445555666543

>3jsy_A Acidic ribosomal protein P0 homolog; ribonucleoprotein; 1.60A {Methanocaldococcus jannaschii}

Probab=93.55  E-value=0.093  Score=46.88  Aligned_cols=151  Identities=11%  Similarity=0.109  Sum_probs=101.7

Q ss_pred             HHHHHHHHHHHhccCeEEEEEeCCC-----Cc-------HHHHHHHHHccCCcEEEEEehHHHH--HHHhhchhhcCC-c
Q 021064           12 IAYDAKLCQLLEEYTQILVAAADNV-----GS-------NQLQNIRRGLRGDSVVLMGKNTMMK--RTIRMHAEKTGN-T   76 (318)
Q Consensus        12 ~~~v~el~e~l~~y~~v~iv~~~~v-----~s-------~qlq~IR~~Lr~~a~~~vgKNtL~r--~AL~~~~~~~~~-~   76 (318)
                      .+.+.+||..+.+.. .+++.=..+     ..       ..+.+|-..|+|..-+.+.+.....  +.|.+.....+. .
T Consensus        32 ~~ql~~lR~~lr~~~-~~~v~KNtL~r~Al~~~~~~e~~~~~~~L~~~l~G~~~l~Ft~~dp~~v~k~l~~~~~~~~Ar~  110 (213)
T 3jsy_A           32 APQLQEIRDKIRDKV-KLRMSRNTLIIRALKEAAEELNNPKLAELANYVERGAAILVTDMNPFKLYKLLEENKSPAPVRG  110 (213)
T ss_dssp             HHHHHHHHHHHTTTE-EEEECCHHHHHHHHHHHHHHTTCGGGGGGGGGCCSSEEEEEESSCHHHHHHHHHHSCEEECCCT
T ss_pred             HHHHHHHHHHHhCCC-EEEEEeHHHHHHHHhhchhhhcccchhHHHHhCcCCeEEEEeCCCHHHHHHHHHHcCCcccccC
Confidence            356778888887653 333311111     00       1345556667887777787665533  334433211111 1


Q ss_pred             c----cccccccccCceEEEEecCChHHHHHHHHhhccCccccCCC--CCCceEEECCCCCCCCCCchhhhhhcCcceEE
Q 021064           77 A----FLNLIPLLQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGL--VAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKI  150 (318)
Q Consensus        77 ~----l~~L~~~L~G~~gLiFTn~dp~ev~k~l~~~k~~~~Ak~G~--iA~~dVvIp~G~t~~~P~~~s~fqkLgIptki  150 (318)
                      |    .+-..+  .|+++     ..|..+...|.+.+.|+...-|.  |..+.+++++|.. ++|++...|+.|||...-
T Consensus       111 GaiAp~dV~ip--~G~t~-----~~p~~~~~~~q~lgiptki~~G~I~i~~d~~v~k~G~~-v~~~~A~lL~~l~i~p~~  182 (213)
T 3jsy_A          111 GQIAPCDIKVE--KGSTG-----MPPGPFLGELKSVGIPAAIEKGKIAIKEDKVVVKKGEV-VSPKLAAVLDRLGIKPIK  182 (213)
T ss_dssp             TCBCSSCEEEC--SEEEE-----ECSSTHHHHHHHTTCCEEEETTEEEECSCEEEECTTSB-CCHHHHHHHHHTTCCCEE
T ss_pred             CCcCCceEEEC--CCCCC-----CCCCccHHHHHHcCCceEeecCeEEEccceEEEecCCC-cCHHHHHHHHHcCCCcEE
Confidence            1    111122  57775     47888899999999999999999  7777889999999 999999999999999998


Q ss_pred             ecceEEEecCeEEeecCcccChhHHH
Q 021064          151 NKGTVEIITPVELIRKGDKVGSSEAA  176 (318)
Q Consensus       151 ~kG~I~I~~d~~v~k~Ge~v~~~qA~  176 (318)
                      -+-+|     ..+...|...+|+...
T Consensus       183 ~~l~l-----~~~~~~g~i~~~~~L~  203 (213)
T 3jsy_A          183 VGLNI-----LAVYEDGIIYTPDVLK  203 (213)
T ss_dssp             ESCEE-----EEEEETTEEECHHHHH
T ss_pred             EEEEE-----EEEEeCCceeCHHHcc
Confidence            88888     5667778888887654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	318
d1zava1	177	Ribosomal protein L10 {Thermotoga maritima [TaxId:	99.68

>d1zava1 d.58.62.1 (A:1-177) Ribosomal protein L10 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Ribosomal protein L10-like
family: Ribosomal protein L10-like
domain: Ribosomal protein L10
species: Thermotoga maritima [TaxId: 2336]

Probab=99.68  E-value=6.6e-17  Score=140.10  Aligned_cols=98  Identities=16%  Similarity=0.260  Sum_probs=90.6

Q ss_pred             ccHHHHHHHHHHHHHHHhccCeEEEEEeCCCCcHHHHHHHHHccC----CcEEEEEehHHHHHHHhhchhhcCCcccccc
Q 021064            6 SKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRG----DSVVLMGKNTMMKRTIRMHAEKTGNTAFLNL   81 (318)
Q Consensus         6 k~~e~K~~~v~el~e~l~~y~~v~iv~~~~v~s~qlq~IR~~Lr~----~a~~~vgKNtL~r~AL~~~~~~~~~~~l~~L   81 (318)
                      .+|++|+++|+++++.|++++.+++++|+|+++++++++|++||+    +++++|.||||+++|+++++       ++.+
T Consensus         2 m~r~~K~~~v~~l~~~l~~s~~vv~~~y~gLtv~e~~~LR~~lre~~~~g~~~kV~KNtL~k~Al~~t~-------~~~l   74 (177)
T d1zava1           2 LTRQQKELIVKEMSEIFKKTSLILFADFLGFTVADLTELRSRLREKYGDGARFRVVKNTLLNLALKNAE-------YEGY   74 (177)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCSEEEEECCTTCCHHHHHHHHHHHHHHHTTSEEEEEECHHHHHHHHHHTT-------CCSC
T ss_pred             CCHHHHHHHHHHHHHHHHhCCEEEEEecCCCCHHHHHHHHHHHHHhccCCeEEEEechHHHHHHHhcCC-------cchh
Confidence            358999999999999999999999999999999999999999984    58999999999999999875       8899


Q ss_pred             cccccCceEEEEe-cCChHHHHHHHHhhcc
Q 021064           82 IPLLQGNVGLIFT-KGDLKEVKEEVAKYKV  110 (318)
Q Consensus        82 ~~~L~G~~gLiFT-n~dp~ev~k~l~~~k~  110 (318)
                      .++|.|+++++|. ++||..++|++.+|..
T Consensus        75 ~~~l~g~~a~~~~~~~d~~~~aK~l~~f~k  104 (177)
T d1zava1          75 EEFLKGPTAVLYVTEGDPVEAVKIIYNFYK  104 (177)
T ss_dssp             GGGCSSSEEEEEESSSCTHHHHHHHHHHHH
T ss_pred             hHHHhhccceeeeecCCchhhhhHHHHHhh
Confidence            9999999999996 6799999999987754