Citrus Sinensis ID: 021116
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 317 | 2.2.26 [Sep-21-2011] | |||||||
| O34331 | 184 | Putative rRNA methyltrans | yes | no | 0.567 | 0.978 | 0.273 | 4e-13 | |
| P0ADX9 | 198 | Ribosomal RNA small subun | N/A | no | 0.457 | 0.732 | 0.248 | 4e-06 | |
| P0ADY0 | 198 | Ribosomal RNA small subun | yes | no | 0.457 | 0.732 | 0.248 | 4e-06 | |
| Q89B29 | 196 | Ribosomal RNA small subun | yes | no | 0.451 | 0.729 | 0.201 | 1e-05 | |
| Q9ZD05 | 236 | Uncharacterized methylase | yes | no | 0.593 | 0.796 | 0.217 | 1e-05 | |
| P57136 | 191 | Ribosomal RNA small subun | yes | no | 0.457 | 0.759 | 0.216 | 0.0002 |
| >sp|O34331|YLBH_BACSU Putative rRNA methyltransferase YlbH OS=Bacillus subtilis (strain 168) GN=ylbH PE=3 SV=2 | Back alignment and function desciption |
|---|
Score = 75.9 bits (185), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 92/190 (48%), Gaps = 10/190 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G + + L + G RP + VK + F+++ GR LDL++G+G
Sbjct: 1 MRVISGSKKGRSLKAVAGTSTRPTTDKVKESIFNMI------GPYFDGGRGLDLFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG FV+ D + V NL+ + ++ E L A + +
Sbjct: 55 LGIEALSRGFEHCIFVDRDFKAIQTVK-SNLKTLELTKHAQVYRNDAERALHAAAK---R 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
+ F + + PPY + L+ I + ++ +D FIV E+ ++ +T G LV +
Sbjct: 111 ETGFRGIFLDPPYKEQKLKALLTLIDEYQMLEEDGFIVAEHDREVELPETVGDLVMTRKE 170
Query: 289 RFGRTHLAIY 298
+G T +AIY
Sbjct: 171 TYGLTGVAIY 180
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May catalyze the S-adenosyl-L-methionine-dependent methylation of a specific base in rRNA. Bacillus subtilis (strain 168) (taxid: 224308) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: - |
| >sp|P0ADX9|RSMD_ECOLI Ribosomal RNA small subunit methyltransferase D OS=Escherichia coli (strain K12) GN=rsmD PE=1 SV=1 | Back alignment and function description |
|---|
Score = 52.4 bits (124), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 75/161 (46%), Gaps = 16/161 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R +KL P +RP + V+ F+ L + + LD ++G+G+
Sbjct: 12 IRIIGGQWRGRKLPVPDSPGLRPTTDRVRETLFNWLAPV------IVDAQCLDCFAGSGA 65
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA+SR + +EMD VS LI NL +++ A F+ +
Sbjct: 66 LGLEALSRYAAGATLIEMDR-AVSQQLIKNL--------ATLKAGNARVVNSNAMSFLAQ 116
Query: 229 DG-PFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVE 268
G P + + V PP+ E + + + + ++ I VE
Sbjct: 117 KGTPHNIVFVDPPFRRGLLEETINLLEDNGWLADEALIYVE 157
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Specifically methylates the guanosine in position 966 of 16S rRNA in the assembled 30S particle. Escherichia coli (strain K12) (taxid: 83333) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 1 |
| >sp|P0ADY0|RSMD_ECOL6 Ribosomal RNA small subunit methyltransferase D OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=rsmD PE=3 SV=1 | Back alignment and function description |
|---|
Score = 52.4 bits (124), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 75/161 (46%), Gaps = 16/161 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R +KL P +RP + V+ F+ L + + LD ++G+G+
Sbjct: 12 IRIIGGQWRGRKLPVPDSPGLRPTTDRVRETLFNWLAPV------IVDAQCLDCFAGSGA 65
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA+SR + +EMD VS LI NL +++ A F+ +
Sbjct: 66 LGLEALSRYAAGATLIEMDR-AVSQQLIKNL--------ATLKAGNARVVNSNAMSFLAQ 116
Query: 229 DG-PFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVE 268
G P + + V PP+ E + + + + ++ I VE
Sbjct: 117 KGTPHNIVFVDPPFRRGLLEETINLLEDNGWLADEALIYVE 157
|
Specifically methylates the guanosine in position 966 of 16S rRNA in the assembled 30S particle. Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) (taxid: 199310) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 1 |
| >sp|Q89B29|RSMD_BUCBP Ribosomal RNA small subunit methyltransferase D OS=Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp) GN=rsmD PE=3 SV=1 | Back alignment and function description |
|---|
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/164 (20%), Positives = 78/164 (47%), Gaps = 21/164 (12%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+Q++ GK + ++ ++RP ++ F+ + + ++ LD +SG+G+
Sbjct: 13 IQIISGKYKNSRIPIINTKNLRPTTNYIRETLFNWISNE-----KIKKSHCLDCFSGSGA 67
Query: 169 VGIEAISRGCSEVHFVEMDP---WVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF 225
+GIEA+SR +E+ + + +LI L ++++H +R T Q+
Sbjct: 68 LGIEAVSRYALSSTCIEIQKKAIFFLKKILIK-------LSITNVHVIRANTI-----QW 115
Query: 226 VGK-DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVE 268
+ K + +D + + PP+ + +A + K+ + ++ I +E
Sbjct: 116 LKKPNKSYDIIFLDPPFKTTLLKQTIALLIKNNWLKNNALIYIE 159
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Specifically methylates the guanosine in position 966 of 16S rRNA in the assembled 30S particle. Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp) (taxid: 224915) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 1 |
| >sp|Q9ZD05|Y545_RICPR Uncharacterized methylase RP545 OS=Rickettsia prowazekii (strain Madrid E) GN=RP545 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/230 (21%), Positives = 96/230 (41%), Gaps = 42/230 (18%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASL--RPGRWLDLYSG 165
+L+++ GK + + + + + + RP +K A F IL S L + LDL++G
Sbjct: 1 MLKIISGKYKNQIIPTAQNIKYRPSTGKLKEAIFSILTSGEFIGNKLFNENTQILDLFAG 60
Query: 166 TGSVGIEAISRGCSEVHFVEMDPW-------------VVSNVLIPNLEWTGFLDVS---S 209
+GS+ E++SRG +++D + + +NV N+ + S
Sbjct: 61 SGSLAFESLSRGAGFATLIDIDTYSLKIAAGFAKSLNIENNVHFININALNLQKTTRYLS 120
Query: 210 IHTVRVETFLERAEQFVG----------------------KDGPFDYMSVTPPYTAVDYE 247
T R E F+ AE ++G + FD + + PPY
Sbjct: 121 KQTDRNE-FITTAESYIGISKHKSTNITYKLPLKEQFCNMSNKVFDLVFIDPPYNKDIVP 179
Query: 248 VLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDRRFGRTHLAI 297
+M + K+ + + IV+E +TD D + I+ + +G++ L +
Sbjct: 180 KVMKLLIKNNWLKNGTIIVIEMS-KTDDYDLDKNIEIIRAKLYGQSKLLV 228
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Rickettsia prowazekii (strain Madrid E) (taxid: 272947) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|P57136|RSMD_BUCAI Ribosomal RNA small subunit methyltransferase D OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS) GN=rsmD PE=3 SV=1 | Back alignment and function description |
|---|
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/162 (21%), Positives = 77/162 (47%), Gaps = 17/162 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+ ++ G + +K+ ++RP ++ F+ L ++ R LD ++G+G
Sbjct: 12 IYIISGNLKGRKISFKNIPNLRPTTNQIRETLFEWLSKY------IKNSRCLDCFAGSGV 65
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET--FLERAEQFV 226
+GIEAISR + +E++ L N++ L++ ++ +R T +L++
Sbjct: 66 LGIEAISRYAAFSTLLEIEKKTFL-TLKKNIK---ELNIYNVEIIRTNTLHWLKKT---- 117
Query: 227 GKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVE 268
++ P+D + + PPY + + + + K+SFI +E
Sbjct: 118 -RNKPYDIIFIDPPYHQGLVKKTINLLENKKWIKKNSFIYIE 158
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Specifically methylates the guanosine in position 966 of 16S rRNA in the assembled 30S particle. Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS) (taxid: 107806) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 317 | ||||||
| 225452620 | 331 | PREDICTED: putative rRNA methyltransfera | 0.977 | 0.936 | 0.748 | 1e-129 | |
| 147800028 | 408 | hypothetical protein VITISV_001039 [Viti | 0.977 | 0.759 | 0.748 | 1e-129 | |
| 224060033 | 321 | predicted protein [Populus trichocarpa] | 0.958 | 0.947 | 0.722 | 1e-123 | |
| 449519687 | 313 | PREDICTED: putative rRNA methyltransfera | 0.880 | 0.891 | 0.732 | 1e-116 | |
| 449461901 | 315 | PREDICTED: putative rRNA methyltransfera | 0.880 | 0.885 | 0.732 | 1e-116 | |
| 297818452 | 312 | hypothetical protein ARALYDRAFT_905108 [ | 0.952 | 0.967 | 0.645 | 1e-108 | |
| 22331389 | 314 | methyltransferase [Arabidopsis thaliana] | 0.820 | 0.828 | 0.731 | 1e-106 | |
| 356550476 | 311 | PREDICTED: putative rRNA methyltransfera | 0.946 | 0.964 | 0.685 | 1e-105 | |
| 255552778 | 268 | conserved hypothetical protein [Ricinus | 0.716 | 0.847 | 0.783 | 1e-103 | |
| 357496275 | 325 | hypothetical protein MTR_6g009400 [Medic | 0.820 | 0.8 | 0.700 | 1e-98 |
| >gi|225452620|ref|XP_002281501.1| PREDICTED: putative rRNA methyltransferase ylbH [Vitis vinifera] gi|296087748|emb|CBI35004.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 467 bits (1201), Expect = e-129, Method: Compositional matrix adjust.
Identities = 241/322 (74%), Positives = 267/322 (82%), Gaps = 12/322 (3%)
Query: 4 VSSSPILSPSSGRLSSN---SSTNLPLFSTSFTKPISQKRYPLIVFSYKSGTGLTSEDKK 60
VSSS I+SP + +N SS +LPLFS F K ++K +++ S KS GL +E+KK
Sbjct: 3 VSSSAIVSPLLINIRTNLSSSSPDLPLFSI-FRKTTTRKP-SVVILSCKSEDGLANEEKK 60
Query: 61 ELLKRYGLDPDEFLSEPSPKT-RRRKE----GRGSKLVVSDEKSQEERTTHRLLQVLGGK 115
LL+RYG D +EF+SEPSPKT RRRKE G+G + VS E + RTTH+LLQVLGGK
Sbjct: 61 LLLERYGYDANEFVSEPSPKTTRRRKELQKTGKGKQ--VSPEDPKPPRTTHKLLQVLGGK 118
Query: 116 ARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAIS 175
ARRKKLLSPKGMDVRPMMEVVKGAAFDILQ AGGCPASLRPGRWLDLYSGTGSVGIEA+S
Sbjct: 119 ARRKKLLSPKGMDVRPMMEVVKGAAFDILQVAGGCPASLRPGRWLDLYSGTGSVGIEALS 178
Query: 176 RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYM 235
RGCSEVHFVEMDPWVVS+VL PNLEWTGFLDVS IHTVRVE FLERA QFVGKD FDY+
Sbjct: 179 RGCSEVHFVEMDPWVVSDVLRPNLEWTGFLDVSVIHTVRVENFLERAMQFVGKDQSFDYI 238
Query: 236 SVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDRRFGRTHL 295
SVTPPYT VDYEVLM QIS SALVG+D+FIVVEYPLR DMLD+CGCLVKI DRRFGRTHL
Sbjct: 239 SVTPPYTEVDYEVLMGQISSSALVGEDTFIVVEYPLRIDMLDSCGCLVKIADRRFGRTHL 298
Query: 296 AIYGPDWAQKKRKSEKKIPIVT 317
AIYGP WAQK+RKSEK P+V
Sbjct: 299 AIYGPKWAQKRRKSEKSFPVVA 320
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147800028|emb|CAN74970.1| hypothetical protein VITISV_001039 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 466 bits (1198), Expect = e-129, Method: Compositional matrix adjust.
Identities = 241/322 (74%), Positives = 267/322 (82%), Gaps = 12/322 (3%)
Query: 4 VSSSPILSPSSGRLSSN---SSTNLPLFSTSFTKPISQKRYPLIVFSYKSGTGLTSEDKK 60
VSSS I+SP + +N SS +LPLFS F K ++K +++ S KS GL +E+KK
Sbjct: 3 VSSSAIVSPLLINIRTNLSSSSPDLPLFSI-FRKTTTRKP-SVVILSCKSEDGLANEEKK 60
Query: 61 ELLKRYGLDPDEFLSEPSPKT-RRRKE----GRGSKLVVSDEKSQEERTTHRLLQVLGGK 115
LL+RYG D +EF+SEPSPKT RRRKE G+G + VS E + RTTH+LLQVLGGK
Sbjct: 61 LLLERYGYDANEFVSEPSPKTTRRRKELQKTGKGKQ--VSPEDPKPPRTTHKLLQVLGGK 118
Query: 116 ARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAIS 175
ARRKKLLSPKGMDVRPMMEVVKGAAFDILQ AGGCPASLRPGRWLDLYSGTGSVGIEA+S
Sbjct: 119 ARRKKLLSPKGMDVRPMMEVVKGAAFDILQVAGGCPASLRPGRWLDLYSGTGSVGIEALS 178
Query: 176 RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYM 235
RGCSEVHFVEMDPWVVS+VL PNLEWTGFLDVS IHTVRVE FLERA QFVGKD FDY+
Sbjct: 179 RGCSEVHFVEMDPWVVSDVLRPNLEWTGFLDVSVIHTVRVENFLERAMQFVGKDQSFDYI 238
Query: 236 SVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDRRFGRTHL 295
SVTPPYT VDYEVLM QIS SALVG+D+FIVVEYPLR DMLD+CGCLVKI DRRFGRTHL
Sbjct: 239 SVTPPYTEVDYEVLMGQISSSALVGEDTFIVVEYPLRIDMLDSCGCLVKIADRRFGRTHL 298
Query: 296 AIYGPDWAQKKRKSEKKIPIVT 317
AIYGP WAQK+RKSEK P+V
Sbjct: 299 AIYGPKWAQKRRKSEKSFPVVA 320
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224060033|ref|XP_002300031.1| predicted protein [Populus trichocarpa] gi|222847289|gb|EEE84836.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 449 bits (1154), Expect = e-123, Method: Compositional matrix adjust.
Identities = 232/321 (72%), Positives = 267/321 (83%), Gaps = 17/321 (5%)
Query: 3 VVSSSPILSP-----SSGRLSSNSSTNLPLFSTSFTKPISQKRYPLIVFSYK-SGTGLTS 56
+SSSPI SP ++ SS+S NL LF+ +KP + + +++ SYK SG GLTS
Sbjct: 2 AISSSPIASPLGININTKLASSSSFPNLALFNLP-SKP-TNRISTIVLSSYKNSGNGLTS 59
Query: 57 EDKKELLKRYGLDPDEFLSEPSP-----KTRRRKE----GRGSKLVVSDEKSQEERTTHR 107
EDKK L ++YGLDP++F S+PS KT+RRKE GRG ++ D + + +RTTHR
Sbjct: 60 EDKKALFEKYGLDPNQFPSQPSSSSPSLKTKRRKEIQNPGRGKQVREEDGEDKPQRTTHR 119
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
LLQVLGGKA+RKKLLSPKGMDVRPMMEVVKG+AFDILQ+AGGCPASLRPGRWLDLYSGTG
Sbjct: 120 LLQVLGGKAKRKKLLSPKGMDVRPMMEVVKGSAFDILQAAGGCPASLRPGRWLDLYSGTG 179
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
SVGIEAISRGCSEVHFVEMDPWVVSNVL PNLE TGFLDVS IHTVRVE+FLERAEQFVG
Sbjct: 180 SVGIEAISRGCSEVHFVEMDPWVVSNVLQPNLECTGFLDVSVIHTVRVESFLERAEQFVG 239
Query: 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
+D FD++SVTPPYT VDY +LM QISKS +VG+D+FIVVEYPLRTDMLD+CGCLVKI D
Sbjct: 240 QDSAFDFISVTPPYTQVDYGILMDQISKSPIVGEDTFIVVEYPLRTDMLDSCGCLVKIND 299
Query: 288 RRFGRTHLAIYGPDWAQKKRK 308
RRFGRTHLAIYGP+WAQKKRK
Sbjct: 300 RRFGRTHLAIYGPEWAQKKRK 320
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449519687|ref|XP_004166866.1| PREDICTED: putative rRNA methyltransferase YlbH-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust.
Identities = 208/284 (73%), Positives = 235/284 (82%), Gaps = 5/284 (1%)
Query: 22 STNLPLFSTSFTKPISQKRYPLIVFSYKSGTGLTSEDKKELLKRYGLDPDEFLSEPSPKT 81
S N PL S +KP + +IV SYKSG +E KK+LL++YGLDP+EFLSEPS
Sbjct: 25 SLNSPL-SNICSKPSAHPSSSIIVCSYKSGNHTVTERKKKLLEQYGLDPNEFLSEPSTNR 83
Query: 82 RR--RKEGRGSKLVVSDEKSQEERTTHRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGA 139
RR RK G+G ++ D K Q R TH+LLQVLGG ARR KLLSPKG+DVRPMMEVVKGA
Sbjct: 84 RREMRKTGKGKQIFPEDPKPQ--RQTHKLLQVLGGSARRMKLLSPKGLDVRPMMEVVKGA 141
Query: 140 AFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNL 199
AFDILQ+AGGCPASLRPGRWLDLYSGTGSVGIEA+SRGCSEVHFVEMDPWVVS+VL PNL
Sbjct: 142 AFDILQAAGGCPASLRPGRWLDLYSGTGSVGIEAMSRGCSEVHFVEMDPWVVSDVLRPNL 201
Query: 200 EWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALV 259
E TGF DVS IHT+RVE F+ERA+Q +G + PFDY+SVTPPYT VDY VLM Q+SKSALV
Sbjct: 202 ESTGFFDVSVIHTIRVENFIERADQLIGTERPFDYISVTPPYTQVDYGVLMGQLSKSALV 261
Query: 260 GKDSFIVVEYPLRTDMLDTCGCLVKIKDRRFGRTHLAIYGPDWA 303
G+D+FIVVEYPLRTDML++CGCL KI DRRFGRTHLAIYGP WA
Sbjct: 262 GEDTFIVVEYPLRTDMLESCGCLTKITDRRFGRTHLAIYGPKWA 305
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449461901|ref|XP_004148680.1| PREDICTED: putative rRNA methyltransferase YlbH-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 423 bits (1088), Expect = e-116, Method: Compositional matrix adjust.
Identities = 208/284 (73%), Positives = 235/284 (82%), Gaps = 5/284 (1%)
Query: 22 STNLPLFSTSFTKPISQKRYPLIVFSYKSGTGLTSEDKKELLKRYGLDPDEFLSEPSPKT 81
S N PL S +KP + +IV SYKSG +E KK+LL++YGLDP+EFLSEPS
Sbjct: 25 SLNSPL-SNICSKPSAHPSSSIIVCSYKSGNHTVTERKKKLLEQYGLDPNEFLSEPSTNR 83
Query: 82 RR--RKEGRGSKLVVSDEKSQEERTTHRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGA 139
RR RK G+G ++ D K Q R TH+LLQVLGG ARR KLLSPKG+DVRPMMEVVKGA
Sbjct: 84 RREMRKTGKGKQIFPEDPKPQ--RQTHKLLQVLGGSARRMKLLSPKGLDVRPMMEVVKGA 141
Query: 140 AFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNL 199
AFDILQ+AGGCPASLRPGRWLDLYSGTGSVGIEA+SRGCSEVHFVEMDPWVVS+VL PNL
Sbjct: 142 AFDILQAAGGCPASLRPGRWLDLYSGTGSVGIEAMSRGCSEVHFVEMDPWVVSDVLRPNL 201
Query: 200 EWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALV 259
E TGF DVS IHT+RVE F+ERA+Q +G + PFDY+SVTPPYT VDY VLM Q+SKSALV
Sbjct: 202 ESTGFFDVSVIHTIRVENFIERADQLIGTERPFDYISVTPPYTQVDYGVLMGQLSKSALV 261
Query: 260 GKDSFIVVEYPLRTDMLDTCGCLVKIKDRRFGRTHLAIYGPDWA 303
G+D+FIVVEYPLRTDML++CGCL KI DRRFGRTHLAIYGP WA
Sbjct: 262 GEDTFIVVEYPLRTDMLESCGCLTKITDRRFGRTHLAIYGPKWA 305
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297818452|ref|XP_002877109.1| hypothetical protein ARALYDRAFT_905108 [Arabidopsis lyrata subsp. lyrata] gi|297322947|gb|EFH53368.1| hypothetical protein ARALYDRAFT_905108 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust.
Identities = 206/319 (64%), Positives = 238/319 (74%), Gaps = 17/319 (5%)
Query: 1 MSVVSSSPILSP----SSGRLSSNSSTNLPLFSTSFTKPISQKRYPLIVFSYKSGTGLTS 56
M+V+ SSPI+SP + +S +S + LF S I R ++ SGTGL S
Sbjct: 1 MAVLLSSPIVSPLGINKNLGVSYSSFPQIHLFKVSTPLRI---RKSVVSSRKNSGTGLAS 57
Query: 57 EDKKELLKRYGLDPDEFLSEPSPKTRRRKEGRGSKLVVSDEKSQEE------RTTHRLLQ 110
EDKK LL+RYG D ++ S K RR++E K+ + + EE RTTHRLLQ
Sbjct: 58 EDKKLLLERYGYDANDDFGSQSKKARRKEE----KMSGRNGQQAEEVVVVQPRTTHRLLQ 113
Query: 111 VLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVG 170
VL G A+RKKLLS KGMDVRPMMEVVKGAAF ILQ+AGGCP SLRPGRWLDLYSGTGSVG
Sbjct: 114 VLAGTAKRKKLLSLKGMDVRPMMEVVKGAAFGILQAAGGCPTSLRPGRWLDLYSGTGSVG 173
Query: 171 IEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDG 230
IEAISRGCSE HFVEMDPWVV+NVL PNLE TGF+D S IHT RVE FLERA++ VGKDG
Sbjct: 174 IEAISRGCSEAHFVEMDPWVVTNVLQPNLEHTGFVDTSVIHTARVENFLERADKLVGKDG 233
Query: 231 PFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDRRF 290
FDY+SVTPPY VDYEVLM QI+KS +G+++FI+VEYP RT MLD+CGCL K+ DRRF
Sbjct: 234 AFDYISVTPPYMEVDYEVLMDQIAKSPAIGENTFILVEYPSRTTMLDSCGCLEKMTDRRF 293
Query: 291 GRTHLAIYGPDWAQKKRKS 309
GRTHLAIYGP WAQK RKS
Sbjct: 294 GRTHLAIYGPKWAQKPRKS 312
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|22331389|ref|NP_189487.2| methyltransferase [Arabidopsis thaliana] gi|9294581|dbj|BAB02862.1| unnamed protein product [Arabidopsis thaliana] gi|18389226|gb|AAL67056.1| unknown protein [Arabidopsis thaliana] gi|23296698|gb|AAN13150.1| unknown protein [Arabidopsis thaliana] gi|332643927|gb|AEE77448.1| methyltransferase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust.
Identities = 193/264 (73%), Positives = 214/264 (81%), Gaps = 4/264 (1%)
Query: 49 KSGTGLTSEDKKELLKRYGLDPDEFLSEPSPKTRRRKE---GRGSKLVVSDEKSQEERTT 105
SGTGL SEDKK LL+RYG D ++ S K RR++E GR S+ V + RTT
Sbjct: 52 NSGTGLASEDKKLLLERYGYDANDDFGSQSKKARRKEEKMSGRNSQQVEE-VVVVQPRTT 110
Query: 106 HRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSG 165
HRLLQVL G A+RKKLLS KGMDVRPMMEVVKGAAF ILQ+AGGCP SLRPGRWLDLYSG
Sbjct: 111 HRLLQVLAGTAKRKKLLSLKGMDVRPMMEVVKGAAFGILQAAGGCPTSLRPGRWLDLYSG 170
Query: 166 TGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF 225
TGSVGIEAISRGCSE HFVEMDPWVVSNVL PNLE TGF+D S IHT RVE FLERA++
Sbjct: 171 TGSVGIEAISRGCSEAHFVEMDPWVVSNVLQPNLEHTGFVDASVIHTARVENFLERADKL 230
Query: 226 VGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKI 285
VGKDG FDY+SVTPPY VDYEVLM QI+KS +G+++FI+VEYP RT MLD+CGCL K+
Sbjct: 231 VGKDGVFDYISVTPPYMEVDYEVLMDQIAKSPAIGENTFILVEYPSRTTMLDSCGCLEKM 290
Query: 286 KDRRFGRTHLAIYGPDWAQKKRKS 309
DRRFGRTHLAIYGP WAQK RKS
Sbjct: 291 TDRRFGRTHLAIYGPKWAQKPRKS 314
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356550476|ref|XP_003543613.1| PREDICTED: putative rRNA methyltransferase ylbH-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust.
Identities = 211/308 (68%), Positives = 240/308 (77%), Gaps = 8/308 (2%)
Query: 9 ILSPSSGRLSSNSSTNL--PLFSTSFTKPISQKRYPLIVFSYKSGTGLTSEDKKELLKRY 66
+L P+ L N+ T+ P F S PL V KSG GL SEDKK LL++Y
Sbjct: 4 LLPPTFSPLLLNTKTDFGSPPFPLLTLSSSSPTSSPLFVSYTKSGNGLASEDKKILLEKY 63
Query: 67 G--LDPDEFLSEPSPKTRRRKEG---RGSKLVVSD-EKSQEERTTHRLLQVLGGKARRKK 120
G +D DE+ S+ S K++RRKE RG K V E + R TH+LLQVLGG ARR K
Sbjct: 64 GYDIDADEYFSQSSSKSKRRKEQPRRRGGKQVQDPPEDPKPPRVTHKLLQVLGGTARRVK 123
Query: 121 LLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSE 180
LLSPKGMDVRPMMEVVKGAAFDILQ+AGGCPA+LRPGRWLDLYSGTGSVGIEA+SRGCS+
Sbjct: 124 LLSPKGMDVRPMMEVVKGAAFDILQAAGGCPAALRPGRWLDLYSGTGSVGIEALSRGCSQ 183
Query: 181 VHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPP 240
VHFVEMDPWVVS+VL PNLE TGFLD S IHTVRVE F ERAEQFVG GPFDY+SVTPP
Sbjct: 184 VHFVEMDPWVVSDVLRPNLEETGFLDASVIHTVRVEKFFERAEQFVGNSGPFDYISVTPP 243
Query: 241 YTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDRRFGRTHLAIYGP 300
YT VDY VLM QIS+S+L+G+++FIVVEYPL+TDMLD+CG LVKI DRRFGRT LAIYGP
Sbjct: 244 YTQVDYGVLMRQISESSLIGENTFIVVEYPLKTDMLDSCGSLVKITDRRFGRTLLAIYGP 303
Query: 301 DWAQKKRK 308
W+QKKR+
Sbjct: 304 TWSQKKRR 311
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255552778|ref|XP_002517432.1| conserved hypothetical protein [Ricinus communis] gi|223543443|gb|EEF44974.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust.
Identities = 181/231 (78%), Positives = 204/231 (88%), Gaps = 4/231 (1%)
Query: 80 KTRRRKEGRGS---KLVVSDEKSQEERTTHRLLQVLGGKARRKKLLSPKGMDVRPMMEVV 136
+++R+KEG+ + K VV++E ++ RTTHRLLQV GGKA+RKKLLSP GMDVRPMMEVV
Sbjct: 18 RSKRKKEGKNAGKGKQVVAEE-AKPPRTTHRLLQVFGGKAKRKKLLSPMGMDVRPMMEVV 76
Query: 137 KGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLI 196
KG AFDILQ+AGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVL
Sbjct: 77 KGCAFDILQAAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLQ 136
Query: 197 PNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKS 256
PNLE TGFLDVS +HTVRVE FLERAEQF+G + FD++SVTPPY V+Y LM Q+SKS
Sbjct: 137 PNLESTGFLDVSVVHTVRVENFLERAEQFIGSNRTFDFISVTPPYMEVNYGTLMDQVSKS 196
Query: 257 ALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDRRFGRTHLAIYGPDWAQKKR 307
ALVG+D+FIVVEYPLRT+MLD CG L+KI DRRFGRTHLAIYGP WAQKKR
Sbjct: 197 ALVGEDTFIVVEYPLRTEMLDACGSLIKIADRRFGRTHLAIYGPKWAQKKR 247
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357496275|ref|XP_003618426.1| hypothetical protein MTR_6g009400 [Medicago truncatula] gi|355493441|gb|AES74644.1| hypothetical protein MTR_6g009400 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 365 bits (938), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 187/267 (70%), Positives = 212/267 (79%), Gaps = 7/267 (2%)
Query: 51 GTGLTSEDKKELLKRYG--LDPDEFLSEPSPKTR----RRKEGRGSKLVVSDE-KSQEER 103
G GL SE+KK LL+RYG +D D++ + S +++ RG K V + + R
Sbjct: 54 GNGLASEEKKILLERYGYDVDADDYFPQSSSPKSKRKKEQQKTRGGKQVQDPPVEPKPPR 113
Query: 104 TTHRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLY 163
TTH+LLQV+GG ARR KLLSPK MDVRPMMEVVKGAAFDILQ+AGG PASLRPGRWLDLY
Sbjct: 114 TTHKLLQVIGGTARRTKLLSPKSMDVRPMMEVVKGAAFDILQAAGGSPASLRPGRWLDLY 173
Query: 164 SGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAE 223
SGTGSVGIEA+SRGCSEVHFVEMDPWVVS+VL PNLE TGF+D S IHTVRVE F ERAE
Sbjct: 174 SGTGSVGIEALSRGCSEVHFVEMDPWVVSDVLRPNLEVTGFIDDSVIHTVRVEKFFERAE 233
Query: 224 QFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLV 283
QFVG + FDY+SVTPPY VDY VLM IS+S VG D+FIVVEYP +TDML++CG LV
Sbjct: 234 QFVGNNDTFDYISVTPPYAEVDYVVLMRLISESPFVGDDTFIVVEYPSKTDMLESCGPLV 293
Query: 284 KIKDRRFGRTHLAIYGPDWAQKKRKSE 310
KI DRRFGRT LAIYGP WAQKKRKS+
Sbjct: 294 KITDRRFGRTLLAIYGPTWAQKKRKSK 320
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 317 | ||||||
| TAIR|locus:2088947 | 314 | AT3G28460 [Arabidopsis thalian | 0.835 | 0.843 | 0.725 | 8.2e-99 | |
| UNIPROTKB|Q74DS1 | 187 | GSU1244 "DNA methyltransferase | 0.577 | 0.978 | 0.326 | 1.7e-18 | |
| TIGR_CMR|GSU_1244 | 187 | GSU_1244 "methyltransferase, p | 0.577 | 0.978 | 0.326 | 1.7e-18 | |
| TIGR_CMR|DET_0189 | 192 | DET_0189 "methyltransferase, p | 0.570 | 0.942 | 0.274 | 9.5e-18 | |
| GENEDB_PFALCIPARUM|MAL13P1.255 | 561 | MAL13P1.255 "hypothetical prot | 0.741 | 0.418 | 0.291 | 1e-17 | |
| UNIPROTKB|C0H5I0 | 561 | MAL13P1.255 "N6-adenine-specif | 0.741 | 0.418 | 0.291 | 1e-17 | |
| TIGR_CMR|BA_4140 | 188 | BA_4140 "methyltransferase, pu | 0.564 | 0.952 | 0.277 | 2.4e-12 | |
| UNIPROTKB|Q2GEK0 | 198 | NSE_0201 "Putative methyltrans | 0.564 | 0.904 | 0.267 | 1.5e-11 | |
| TIGR_CMR|NSE_0201 | 198 | NSE_0201 "putative methyltrans | 0.564 | 0.904 | 0.267 | 1.5e-11 | |
| UNIPROTKB|Q3AC42 | 184 | CHY_1460 "Putative methyltrans | 0.558 | 0.961 | 0.294 | 1.9e-11 |
| TAIR|locus:2088947 AT3G28460 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 981 (350.4 bits), Expect = 8.2e-99, P = 8.2e-99
Identities = 196/270 (72%), Positives = 219/270 (81%)
Query: 44 IVFSYK-SGTGLTSEDKKELLKRYGLDPDEFLSEPSPKTRRRKE---GRGSKLVVSDEKS 99
+V S K SGTGL SEDKK LL+RYG D ++ S K RR++E GR S+ V +
Sbjct: 46 VVSSRKNSGTGLASEDKKLLLERYGYDANDDFGSQSKKARRKEEKMSGRNSQQV-EEVVV 104
Query: 100 QEERTTHRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRW 159
+ RTTHRLLQVL G A+RKKLLS KGMDVRPMMEVVKGAAF ILQ+AGGCP SLRPGRW
Sbjct: 105 VQPRTTHRLLQVLAGTAKRKKLLSLKGMDVRPMMEVVKGAAFGILQAAGGCPTSLRPGRW 164
Query: 160 LDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL 219
LDLYSGTGSVGIEAISRGCSE HFVEMDPWVVSNVL PNLE TGF+D S IHT RVE FL
Sbjct: 165 LDLYSGTGSVGIEAISRGCSEAHFVEMDPWVVSNVLQPNLEHTGFVDASVIHTARVENFL 224
Query: 220 ERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTC 279
ERA++ VGKDG FDY+SVTPPY VDYEVLM QI+KS +G+++FI+VEYP RT MLD+C
Sbjct: 225 ERADKLVGKDGVFDYISVTPPYMEVDYEVLMDQIAKSPAIGENTFILVEYPSRTTMLDSC 284
Query: 280 GCLVKIKDRRFGRTHLAIYGPDWAQKKRKS 309
GCL K+ DRRFGRTHLAIYGP WAQK RKS
Sbjct: 285 GCLEKMTDRRFGRTHLAIYGPKWAQKPRKS 314
|
|
| UNIPROTKB|Q74DS1 GSU1244 "DNA methyltransferase, putative" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 223 (83.6 bits), Expect = 1.7e-18, P = 1.7e-18
Identities = 62/190 (32%), Positives = 104/190 (54%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+GG AR ++L +P+G VRP + +K A F+IL S R LDL++GTG+
Sbjct: 1 MRVVGGSARGRRLAAPRGNRVRPTADRIKEALFNILHSG---MEGFEEVRVLDLFAGTGN 57
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRGCSE FV+ V+ V+ NL+ GF D + I T ++ E+ +
Sbjct: 58 LGIEALSRGCSEAVFVDSHRESVA-VIRRNLDELGFGDRARIIARDALTAIDYLER---E 113
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
F + + PPY + ++ +++ S L+ +++ IVVE + + D L + R
Sbjct: 114 GASFRLVMLDPPYRLGLADKVLGRLAGSPLIAEETIIVVESAVDEVLPDLMEPLHLVDRR 173
Query: 289 RFGRTHLAIY 298
+G T L+ +
Sbjct: 174 IYGDTALSFF 183
|
|
| TIGR_CMR|GSU_1244 GSU_1244 "methyltransferase, putative" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 223 (83.6 bits), Expect = 1.7e-18, P = 1.7e-18
Identities = 62/190 (32%), Positives = 104/190 (54%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+GG AR ++L +P+G VRP + +K A F+IL S R LDL++GTG+
Sbjct: 1 MRVVGGSARGRRLAAPRGNRVRPTADRIKEALFNILHSG---MEGFEEVRVLDLFAGTGN 57
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRGCSE FV+ V+ V+ NL+ GF D + I T ++ E+ +
Sbjct: 58 LGIEALSRGCSEAVFVDSHRESVA-VIRRNLDELGFGDRARIIARDALTAIDYLER---E 113
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
F + + PPY + ++ +++ S L+ +++ IVVE + + D L + R
Sbjct: 114 GASFRLVMLDPPYRLGLADKVLGRLAGSPLIAEETIIVVESAVDEVLPDLMEPLHLVDRR 173
Query: 289 RFGRTHLAIY 298
+G T L+ +
Sbjct: 174 IYGDTALSFF 183
|
|
| TIGR_CMR|DET_0189 DET_0189 "methyltransferase, putative" [Dehalococcoides ethenogenes 195 (taxid:243164)] | Back alignment and assigned GO terms |
|---|
Score = 216 (81.1 bits), Expect = 9.5e-18, P = 9.5e-18
Identities = 53/193 (27%), Positives = 102/193 (52%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G A+ K ++ P+ RP E+V+GA +L++ + + LD+YSG+GS
Sbjct: 1 MRIIAGDAKGKNIIVPQRKATRPATELVRGAMMSMLEAIAEDWSEV-----LDIYSGSGS 55
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA+SRG V FVE + +++ NLE G + ++ + V +A +GK
Sbjct: 56 LGLEALSRGAGHVDFVEHER-ACCDIIKQNLETIGCAGQAHVYCLDVP----KAMSLLGK 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
+D + PPY ++ ++ S+L+G+++ + V + + + G L +K+
Sbjct: 111 Q--YDVILADPPYRNQQIGEVLEKLGNSSLIGENTVMAVTHSAHLTLAERYGRLTMLKEH 168
Query: 289 RFGRTHLAIYGPD 301
R G + +AIY D
Sbjct: 169 RHGDSLIAIYRKD 181
|
|
| GENEDB_PFALCIPARUM|MAL13P1.255 MAL13P1.255 "hypothetical protein, conserved" [Plasmodium falciparum (taxid:5833)] | Back alignment and assigned GO terms |
|---|
Score = 224 (83.9 bits), Expect = 1.0e-17, P = 1.0e-17
Identities = 74/254 (29%), Positives = 122/254 (48%)
Query: 54 LTSEDKKELLKR--YGLDPDEFLSEPSPKTRRRKEGRG-SKLVVSDEKSQEERTTHRLLQ 110
++S+ KK +++ YGL P E L+ + K G K+ +E ++L
Sbjct: 284 VSSKGKKRIIETDMYGL-PKEKLNIKRQTNKNIKSKYGYCKIKTYNETINVNYRKKKILS 342
Query: 111 VLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAG---GCPASLRPGRWLDLYSGTG 167
+L G + K+L SP RPMM VK + F+IL G ++ LD+++G+G
Sbjct: 343 ILEGTLKNKRLYSPDTY-TRPMMSKVKESIFNILTHLNILNGYNINV-----LDVFTGSG 396
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF--LERAEQF 225
++GIE ISR V FV++ V NL D + +R + L+ +F
Sbjct: 397 NLGIECISRDVKNVTFVDLSLNSCRTVF-ENLRLCNIYDTNK-KIIRADAMELLQNPYKF 454
Query: 226 VGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDT-CGCLVK 284
+ ++ TPPY + Y L+ IS S L +D I +EYP ++L G L+
Sbjct: 455 NVHE-KYNLGFFTPPYEQIIYSDLIHNISNSKLFEEDGLIFIEYPKEINLLPKKVGNLIG 513
Query: 285 IKDRRFGRTHLAIY 298
+++R+FGRT+ +Y
Sbjct: 514 LRNRKFGRTYYTLY 527
|
|
| UNIPROTKB|C0H5I0 MAL13P1.255 "N6-adenine-specific methylase, putative" [Plasmodium falciparum 3D7 (taxid:36329)] | Back alignment and assigned GO terms |
|---|
Score = 224 (83.9 bits), Expect = 1.0e-17, P = 1.0e-17
Identities = 74/254 (29%), Positives = 122/254 (48%)
Query: 54 LTSEDKKELLKR--YGLDPDEFLSEPSPKTRRRKEGRG-SKLVVSDEKSQEERTTHRLLQ 110
++S+ KK +++ YGL P E L+ + K G K+ +E ++L
Sbjct: 284 VSSKGKKRIIETDMYGL-PKEKLNIKRQTNKNIKSKYGYCKIKTYNETINVNYRKKKILS 342
Query: 111 VLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAG---GCPASLRPGRWLDLYSGTG 167
+L G + K+L SP RPMM VK + F+IL G ++ LD+++G+G
Sbjct: 343 ILEGTLKNKRLYSPDTY-TRPMMSKVKESIFNILTHLNILNGYNINV-----LDVFTGSG 396
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF--LERAEQF 225
++GIE ISR V FV++ V NL D + +R + L+ +F
Sbjct: 397 NLGIECISRDVKNVTFVDLSLNSCRTVF-ENLRLCNIYDTNK-KIIRADAMELLQNPYKF 454
Query: 226 VGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDT-CGCLVK 284
+ ++ TPPY + Y L+ IS S L +D I +EYP ++L G L+
Sbjct: 455 NVHE-KYNLGFFTPPYEQIIYSDLIHNISNSKLFEEDGLIFIEYPKEINLLPKKVGNLIG 513
Query: 285 IKDRRFGRTHLAIY 298
+++R+FGRT+ +Y
Sbjct: 514 LRNRKFGRTYYTLY 527
|
|
| TIGR_CMR|BA_4140 BA_4140 "methyltransferase, putative" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 168 (64.2 bits), Expect = 2.4e-12, P = 2.4e-12
Identities = 53/191 (27%), Positives = 97/191 (50%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + L + G RP + VK + F+++ G P G LDL+ G+G
Sbjct: 1 MRVVSGKCKGHPLKAVPGNTTRPTTDKVKESIFNMI---G--PY-FDGGIALDLFGGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA-EQFVG 227
+GIEAISRG + FV+ D + + NLE + + ++ R + ERA + +
Sbjct: 55 LGIEAISRGIDKAIFVDRDNKAIKTIH-QNLESCRIQEQAEVY--RNDA--ERAIKALIK 109
Query: 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
++ FD + + PPY L++ + + L+ I+ E+ + ++ G LVK++
Sbjct: 110 REMSFDLILIDPPYKDQKIVSLISVMDQHGLLHNAGLIMAEHGNDVVLPESIGRLVKVRA 169
Query: 288 RRFGRTHLAIY 298
++G T ++IY
Sbjct: 170 EKYGITAISIY 180
|
|
| UNIPROTKB|Q2GEK0 NSE_0201 "Putative methyltransferase" [Neorickettsia sennetsu str. Miyayama (taxid:222891)] | Back alignment and assigned GO terms |
|---|
Score = 161 (61.7 bits), Expect = 1.5e-11, P = 1.5e-11
Identities = 53/198 (26%), Positives = 99/198 (50%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + +K+ KG+++RP M V+ A F+I+ A +LDL++GTGS
Sbjct: 1 MRVISGKYKERKIGLIKGVEIRPTMGKVREALFNIILHARFVTKLPEETHFLDLFTGTGS 60
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
V IEA+SRG + V +++D + + NLE D ++ + + + E+ GK
Sbjct: 61 VSIEALSRGFASVTAIDID----TRCIYANLEKMAIHDKITV----ISRDIVKLEES-GK 111
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGK-------DSFIVVEYPLRTDMLDTCGC 281
+D + + PPY ++ +QI++ + G D IV+ R ++ +
Sbjct: 112 R--YDVVFMDPPYNEKTHKYRASQITEKSFTGLHERGWLCDGSIVILEKHRKEIFELKHR 169
Query: 282 LVKIKD-RRFGRTHLAIY 298
++ D RR+G + L +
Sbjct: 170 AFELIDSRRYGMSELLTF 187
|
|
| TIGR_CMR|NSE_0201 NSE_0201 "putative methyltransferase" [Neorickettsia sennetsu str. Miyayama (taxid:222891)] | Back alignment and assigned GO terms |
|---|
Score = 161 (61.7 bits), Expect = 1.5e-11, P = 1.5e-11
Identities = 53/198 (26%), Positives = 99/198 (50%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + +K+ KG+++RP M V+ A F+I+ A +LDL++GTGS
Sbjct: 1 MRVISGKYKERKIGLIKGVEIRPTMGKVREALFNIILHARFVTKLPEETHFLDLFTGTGS 60
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
V IEA+SRG + V +++D + + NLE D ++ + + + E+ GK
Sbjct: 61 VSIEALSRGFASVTAIDID----TRCIYANLEKMAIHDKITV----ISRDIVKLEES-GK 111
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGK-------DSFIVVEYPLRTDMLDTCGC 281
+D + + PPY ++ +QI++ + G D IV+ R ++ +
Sbjct: 112 R--YDVVFMDPPYNEKTHKYRASQITEKSFTGLHERGWLCDGSIVILEKHRKEIFELKHR 169
Query: 282 LVKIKD-RRFGRTHLAIY 298
++ D RR+G + L +
Sbjct: 170 AFELIDSRRYGMSELLTF 187
|
|
| UNIPROTKB|Q3AC42 CHY_1460 "Putative methyltransferase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 160 (61.4 bits), Expect = 1.9e-11, P = 1.9e-11
Identities = 56/190 (29%), Positives = 92/190 (48%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G AR +KL++PKG+ RP + VK A F+IL A + LD ++GTG+
Sbjct: 1 MRIITGDARGRKLIAPKGLKTRPTSDRVKEAMFNIL-GYRVIDAVV-----LDGFAGTGN 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA+SRG +F+E D S L N+E G+ D + + L +
Sbjct: 55 LGLEALSRGAKFSYFIEADREAFS-CLRRNIENLGYGDRAKAILGDIFKILPHINE---- 109
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
FD + + PPY E + I + L+ + IVVE + + + L I++
Sbjct: 110 --KFDLIFLDPPYGYGFEERAVLTILQLGLLKETGLIVVETAKKIGLNISSEKLGLIREA 167
Query: 289 RFGRTHLAIY 298
+G T L Y
Sbjct: 168 VYGNTLLGFY 177
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 4th Layer | 2.1.1.171 | LOW CONFIDENCE prediction! |
| 3rd Layer | 2.1.1 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 317 | |||
| pfam03602 | 183 | pfam03602, Cons_hypoth95, Conserved hypothetical p | 8e-60 | |
| COG0742 | 187 | COG0742, COG0742, N6-adenine-specific methylase [D | 3e-36 | |
| TIGR00095 | 190 | TIGR00095, TIGR00095, RNA methyltransferase, RsmD | 6e-26 | |
| PRK10909 | 199 | PRK10909, rsmD, 16S rRNA m(2)G966-methyltransferas | 1e-07 |
| >gnl|CDD|202698 pfam03602, Cons_hypoth95, Conserved hypothetical protein 95 | Back alignment and domain information |
|---|
Score = 189 bits (481), Expect = 8e-60
Identities = 59/191 (30%), Positives = 99/191 (51%), Gaps = 8/191 (4%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GGKAR +KL P G RP + V+ A F+IL + R LDL++G+G+
Sbjct: 1 MRIIGGKARGRKLKVPPGPGTRPTTDRVREALFNILAPY----FEIGGARVLDLFAGSGA 56
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA+SRG + V FVE D V+ L NLE L + V + GK
Sbjct: 57 LGLEALSRGAASVVFVEKDKKAVA-TLKENLE---ALGLEGETAVLRNDAARALLRLAGK 112
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
PFD + + PPY E + ++++ + ++ IVVE ++ + L +++
Sbjct: 113 GPPFDLVFLDPPYAKGLIEEALELLAENGWLNPNALIVVETESDEELPEQPANLELHREK 172
Query: 289 RFGRTHLAIYG 299
++G+T LA+Y
Sbjct: 173 KYGQTKLALYQ 183
|
Length = 183 |
| >gnl|CDD|223813 COG0742, COG0742, N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 128 bits (324), Expect = 3e-36
Identities = 55/191 (28%), Positives = 92/191 (48%), Gaps = 14/191 (7%)
Query: 111 VLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVG 170
++GGK + +KL +P G RP + V+ A F+IL P + R LDL++G+G++G
Sbjct: 4 IIGGKYKGRKLKTPDGPGTRPTTDRVREALFNILA-----PDEIEGARVLDLFAGSGALG 58
Query: 171 IEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDG 230
+EA+SRG + V FVE D V +L NL+ G + + L++ G
Sbjct: 59 LEALSRGAARVVFVEKDRKAVK-ILKENLKALGLEGEARVLRNDALRALKQL----GTRE 113
Query: 231 PFDYMSVTPPY---TAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
PFD + + PPY L+ L + IVVE+ ++ + ++
Sbjct: 114 PFDLVFLDPPYAKGLLDKELALLLLEENGWLK-PGALIVVEHDKDVELPELPANFELHRE 172
Query: 288 RRFGRTHLAIY 298
+++G+T L Y
Sbjct: 173 KKYGQTKLTFY 183
|
Length = 187 |
| >gnl|CDD|188022 TIGR00095, TIGR00095, RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 6e-26
Identities = 54/191 (28%), Positives = 94/191 (49%), Gaps = 12/191 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R +KL P G RP + V+ + F+IL+ + +LDL++G+G+
Sbjct: 10 IRIIGGQYRGRKLKVPPGPSTRPTTDRVRESLFNILR------PDIVGAHFLDLFAGSGA 63
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG- 227
+G+EA+SRG + FVE D V+ L NL L S V RA F+
Sbjct: 64 LGLEALSRGAASAVFVEQDR-KVAQTLKENLS---TLKKSG-EQATVLNDAVRALLFLAK 118
Query: 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
K PFD + + PP+ E L+ + ++ + IVVEY ++ ++
Sbjct: 119 KQTPFDIIYLDPPFNRGLLEALLELLGENKWLNPKGLIVVEYDRENELPTVPETWSLLRQ 178
Query: 288 RRFGRTHLAIY 298
+ +G++ L +Y
Sbjct: 179 KVYGQSALRLY 189
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases [Protein synthesis, tRNA and rRNA base modification]. Length = 190 |
| >gnl|CDD|236793 PRK10909, rsmD, 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 1e-07
Identities = 37/134 (27%), Positives = 64/134 (47%), Gaps = 16/134 (11%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R +KL P +RP + V+ F+ L + R LD ++G+G+
Sbjct: 13 IRIIGGQWRGRKLPVPDSPGLRPTTDRVRETLFNWLA------PVIVDARCLDCFAGSGA 66
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA+SR + +EMD V+ LI NL L + V F+ +
Sbjct: 67 LGLEALSRYAAGATLLEMDR-AVAQQLIKNL---ATLKAGNARVVNTNAL-----SFLAQ 117
Query: 229 DG-PFDYMSVTPPY 241
G P + + V PP+
Sbjct: 118 PGTPHNVVFVDPPF 131
|
Length = 199 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 317 | |||
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 100.0 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 100.0 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 100.0 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 100.0 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.76 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 99.74 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.73 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.73 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 99.72 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 99.72 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 99.71 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 99.71 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 99.7 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 99.7 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.7 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 99.69 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.67 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.67 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.67 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 99.67 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 99.66 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 99.66 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.66 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 99.66 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 99.65 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 99.64 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.63 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 99.63 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.62 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.62 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 99.62 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 99.61 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.61 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.61 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 99.61 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.61 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 99.61 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 99.58 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.58 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.58 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.57 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 99.57 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.57 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.57 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.57 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.55 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 99.54 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 99.53 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 99.49 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 99.49 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 99.48 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 99.48 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 99.48 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.48 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.47 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.46 | |
| PLN02476 | 278 | O-methyltransferase | 99.44 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.44 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 99.42 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.42 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 99.41 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 99.39 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.38 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 99.38 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.38 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 99.38 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 99.37 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 99.37 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.36 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.36 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.36 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 99.35 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 99.35 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.33 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.32 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.32 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 99.31 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 99.31 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.3 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.3 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.29 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.29 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.29 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 99.29 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 99.29 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 99.28 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 99.28 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 99.27 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 99.26 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 99.26 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 99.24 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.24 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 99.24 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 99.24 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 99.24 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.23 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.23 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 99.23 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.22 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.21 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.21 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 99.2 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.2 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.19 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.19 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 99.18 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.18 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.18 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.15 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 99.15 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 99.15 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 99.15 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.14 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 99.14 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 99.13 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 99.13 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 99.11 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.11 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.11 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.11 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 99.1 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.09 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.09 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 99.08 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.08 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.08 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.07 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 99.07 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.07 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 99.06 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 99.06 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 99.06 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.06 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 99.05 | |
| PLN02366 | 308 | spermidine synthase | 99.05 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.05 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.04 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 99.03 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.03 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.03 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.02 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.02 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 99.02 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.01 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.01 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.0 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 98.99 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 98.98 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 98.98 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 98.97 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 98.95 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 98.95 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 98.94 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 98.94 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 98.94 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 98.93 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 98.91 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 98.91 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 98.9 | |
| PLN02823 | 336 | spermine synthase | 98.9 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 98.89 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 98.88 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 98.85 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 98.85 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 98.84 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 98.82 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 98.81 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 98.81 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 98.81 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 98.8 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 98.79 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 98.78 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 98.78 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 98.76 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 98.73 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 98.7 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 98.69 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 98.68 | |
| KOG2671 | 421 | consensus Putative RNA methylase [Replication, rec | 98.67 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 98.67 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 98.63 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 98.63 | |
| PF02005 | 377 | TRM: N2,N2-dimethylguanosine tRNA methyltransferas | 98.62 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 98.62 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 98.61 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.6 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 98.59 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 98.57 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.48 | |
| COG1867 | 380 | TRM1 N2,N2-dimethylguanosine tRNA methyltransferas | 98.47 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 98.46 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 98.42 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 98.42 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 98.42 | |
| PF11599 | 246 | AviRa: RRNA methyltransferase AviRa; InterPro: IPR | 98.42 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 98.36 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 98.32 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.31 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 98.3 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 98.28 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 98.27 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 98.25 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 98.22 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 98.2 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 98.18 | |
| KOG1227 | 351 | consensus Putative methyltransferase [General func | 98.17 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 98.14 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 98.13 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 98.13 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 98.13 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 98.11 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 98.09 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 98.08 | |
| PHA01634 | 156 | hypothetical protein | 98.06 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 98.05 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 98.03 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 98.02 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 98.0 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 98.0 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 97.97 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 97.95 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 97.91 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 97.86 | |
| COG0286 | 489 | HsdM Type I restriction-modification system methyl | 97.8 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 97.78 | |
| KOG1253 | 525 | consensus tRNA methyltransferase [Translation, rib | 97.73 | |
| PF00145 | 335 | DNA_methylase: C-5 cytosine-specific DNA methylase | 97.73 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 97.72 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 97.72 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 97.66 | |
| PF01555 | 231 | N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th | 97.5 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 97.5 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 97.47 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 97.47 | |
| KOG2078 | 495 | consensus tRNA modification enzyme [RNA processing | 97.42 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 97.39 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 97.39 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 97.38 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 97.37 | |
| PF04445 | 234 | SAM_MT: Putative SAM-dependent methyltransferase; | 97.36 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 97.35 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 97.34 | |
| KOG4058 | 199 | consensus Uncharacterized conserved protein [Funct | 97.34 | |
| KOG1501 | 636 | consensus Arginine N-methyltransferase [General fu | 97.27 | |
| COG0270 | 328 | Dcm Site-specific DNA methylase [DNA replication, | 97.27 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 97.25 | |
| TIGR00675 | 315 | dcm DNA-methyltransferase (dcm). All proteins in t | 97.24 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 97.2 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 97.17 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 97.15 | |
| PRK13699 | 227 | putative methylase; Provisional | 97.02 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 96.98 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 96.98 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 96.96 | |
| PF04378 | 245 | RsmJ: Ribosomal RNA small subunit methyltransferas | 96.96 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 96.94 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 96.93 | |
| PF07279 | 218 | DUF1442: Protein of unknown function (DUF1442); In | 96.92 | |
| PRK10458 | 467 | DNA cytosine methylase; Provisional | 96.83 | |
| PRK13699 | 227 | putative methylase; Provisional | 96.82 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 96.79 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 96.73 | |
| KOG2198 | 375 | consensus tRNA cytosine-5-methylases and related e | 96.73 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 96.71 | |
| TIGR00497 | 501 | hsdM type I restriction system adenine methylase ( | 96.7 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 96.62 | |
| COG3129 | 292 | Predicted SAM-dependent methyltransferase [General | 96.53 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 96.39 | |
| COG2961 | 279 | ComJ Protein involved in catabolism of external DN | 96.28 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 96.27 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 96.19 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 96.16 | |
| COG1568 | 354 | Predicted methyltransferases [General function pre | 96.15 | |
| PF01795 | 310 | Methyltransf_5: MraW methylase family; InterPro: I | 96.11 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 96.05 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 96.05 | |
| KOG2912 | 419 | consensus Predicted DNA methylase [Function unknow | 95.97 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 95.89 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 95.72 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 95.61 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 95.47 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 95.27 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 95.09 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 95.03 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 95.02 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 94.91 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 94.44 | |
| PF10237 | 162 | N6-adenineMlase: Probable N6-adenine methyltransfe | 93.8 | |
| COG0863 | 302 | DNA modification methylase [DNA replication, recom | 93.62 | |
| KOG0822 | 649 | consensus Protein kinase inhibitor [Cell cycle con | 93.4 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 92.72 | |
| KOG1099 | 294 | consensus SAM-dependent methyltransferase/cell div | 92.66 | |
| PF03269 | 177 | DUF268: Caenorhabditis protein of unknown function | 92.62 | |
| COG1743 | 875 | Adenine-specific DNA methylase containing a Zn-rib | 92.35 | |
| PF05430 | 124 | Methyltransf_30: S-adenosyl-L-methionine-dependent | 92.13 | |
| PF01555 | 231 | N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th | 91.7 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 91.65 | |
| KOG2920 | 282 | consensus Predicted methyltransferase [General fun | 91.49 | |
| KOG0024 | 354 | consensus Sorbitol dehydrogenase [Secondary metabo | 91.11 | |
| PF02086 | 260 | MethyltransfD12: D12 class N6 adenine-specific DNA | 90.61 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 90.56 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 89.86 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 89.84 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 89.16 | |
| PF00107 | 130 | ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: | 89.14 | |
| PRK10904 | 271 | DNA adenine methylase; Provisional | 88.93 | |
| KOG1562 | 337 | consensus Spermidine synthase [Amino acid transpor | 88.89 | |
| KOG1201 | 300 | consensus Hydroxysteroid 17-beta dehydrogenase 11 | 88.35 | |
| TIGR00571 | 266 | dam DNA adenine methylase (dam). All proteins in t | 88.09 | |
| PF05050 | 167 | Methyltransf_21: Methyltransferase FkbM domain; In | 87.97 | |
| KOG3924 | 419 | consensus Putative protein methyltransferase invol | 87.4 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 87.33 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 87.23 | |
| PF05711 | 248 | TylF: Macrocin-O-methyltransferase (TylF); InterPr | 87.19 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 86.86 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 86.85 | |
| KOG1596 | 317 | consensus Fibrillarin and related nucleolar RNA-bi | 86.78 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 85.94 | |
| KOG2360 | 413 | consensus Proliferation-associated nucleolar prote | 85.27 | |
| COG4889 | 1518 | Predicted helicase [General function prediction on | 82.9 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 82.78 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 82.36 | |
| KOG0919 | 338 | consensus C-5 cytosine-specific DNA methylase [Tra | 80.39 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 80.24 |
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-39 Score=286.13 Aligned_cols=182 Identities=34% Similarity=0.603 Sum_probs=151.5
Q ss_pred EEEEeeeecceEEecCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCH
Q 021116 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDP 188 (317)
Q Consensus 109 l~ii~G~~~G~~l~~p~~~~~rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~ 188 (317)
||||+|+|+|++|.+|++..+|||+++|++++||+|+.. ...+.+|||||||||++|+||+|||+.+|++||.|+
T Consensus 1 mRIi~G~~kgr~l~~p~~~~~RPT~drvrealFniL~~~-----~~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~ 75 (183)
T PF03602_consen 1 MRIIGGKYKGRKLKTPKGDNTRPTTDRVREALFNILQPR-----NLEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNR 75 (183)
T ss_dssp EE--SSTTTT-EEE-TT--TS-SSSHHHHHHHHHHHHCH------HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-H
T ss_pred CEEEeeecCCCEecCCCCCCcCCCcHHHHHHHHHHhccc-----ccCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCH
Confidence 689999999999999999999999999999999999863 147999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCcc-HHHHHHHHHHcCCcCCCeEEEE
Q 021116 189 WVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVD-YEVLMAQISKSALVGKDSFIVV 267 (317)
Q Consensus 189 ~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~-~~~~l~~L~~~~lLkpgG~ivv 267 (317)
.++ +.+++|++.+++.++++++.+|+..++.... ....+||+||+||||.... +.++++.+.+..+|+++|+|++
T Consensus 76 ~a~-~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~---~~~~~fDiIflDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~ 151 (183)
T PF03602_consen 76 KAI-KIIKKNLEKLGLEDKIRVIKGDAFKFLLKLA---KKGEKFDIIFLDPPYAKGLYYEELLELLAENNLLNEDGLIII 151 (183)
T ss_dssp HHH-HHHHHHHHHHT-GGGEEEEESSHHHHHHHHH---HCTS-EEEEEE--STTSCHHHHHHHHHHHHTTSEEEEEEEEE
T ss_pred HHH-HHHHHHHHHhCCCcceeeeccCHHHHHHhhc---ccCCCceEEEECCCcccchHHHHHHHHHHHCCCCCCCEEEEE
Confidence 998 9999999999998889999999998886652 1357899999999999887 4999999988899999999999
Q ss_pred EeCCCCCccccCCCeEEEEEeecCceEEEEEe
Q 021116 268 EYPLRTDMLDTCGCLVKIKDRRFGRTHLAIYG 299 (317)
Q Consensus 268 ~~~~~~~l~~~~~~~~~~~~r~yG~~~l~~~~ 299 (317)
|+...+.+++...+|..+++++||++.++||+
T Consensus 152 E~~~~~~~~~~~~~~~~~~~r~yG~t~~~~~~ 183 (183)
T PF03602_consen 152 EHSKKEDLPESPGNWELIKERKYGDTKLSFYQ 183 (183)
T ss_dssp EEETTSSS-SEETTEEEEEEEEETTEEEEEEE
T ss_pred EecCCCCCccCCCCEEEEEEecCCCEEEEEEC
Confidence 99988887777789999999999999999995
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-38 Score=277.34 Aligned_cols=183 Identities=28% Similarity=0.501 Sum_probs=163.3
Q ss_pred eEEEEeeeecceEEecCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCC
Q 021116 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMD 187 (317)
Q Consensus 108 il~ii~G~~~G~~l~~p~~~~~rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin 187 (317)
.+|||+|+|+|++|.+|++..+|||+++|++++|||+... ...+.+|||+|||||++|+||+|||+.+|++||.|
T Consensus 1 ~mRIi~G~~kgr~L~~p~~~~~RPT~drVREalFNil~~~-----~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~ 75 (187)
T COG0742 1 QMRIIGGKYKGRKLKTPDGPGTRPTTDRVREALFNILAPD-----EIEGARVLDLFAGSGALGLEALSRGAARVVFVEKD 75 (187)
T ss_pred CeEEEeccccCCcccCCCCCCcCCCchHHHHHHHHhcccc-----ccCCCEEEEecCCccHhHHHHHhCCCceEEEEecC
Confidence 3799999999999999999999999999999999999872 16799999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCccHHHHHH--HHHHcCCcCCCeEE
Q 021116 188 PWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMA--QISKSALVGKDSFI 265 (317)
Q Consensus 188 ~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~--~L~~~~lLkpgG~i 265 (317)
.+++ +.+++|++.+++..+.+++..|+..++..+. ..+.||+||+||||.++.++..+. .+.+..||+|++++
T Consensus 76 ~~a~-~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~----~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~i 150 (187)
T COG0742 76 RKAV-KILKENLKALGLEGEARVLRNDALRALKQLG----TREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALI 150 (187)
T ss_pred HHHH-HHHHHHHHHhCCccceEEEeecHHHHHHhcC----CCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEE
Confidence 9998 9999999999988889999999998877653 223599999999999877744444 33477899999999
Q ss_pred EEEeCCCCCccccCCCeEEEEEeecCceEEEEEee
Q 021116 266 VVEYPLRTDMLDTCGCLVKIKDRRFGRTHLAIYGP 300 (317)
Q Consensus 266 vv~~~~~~~l~~~~~~~~~~~~r~yG~~~l~~~~p 300 (317)
|+|+.....+++...+|.++++++||.+.+.||..
T Consensus 151 v~E~~~~~~~~~~~~~~~~~r~k~yG~t~l~~y~~ 185 (187)
T COG0742 151 VVEHDKDVELPELPANFELHREKKYGQTKLTFYRR 185 (187)
T ss_pred EEEeCCCcCccccCCCeEEEEEeecCCEEEEEEEe
Confidence 99999888887788999999999999999999974
|
|
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-34 Score=254.77 Aligned_cols=185 Identities=22% Similarity=0.276 Sum_probs=162.9
Q ss_pred ccceEEEEeeeecceEEecCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEE
Q 021116 105 THRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFV 184 (317)
Q Consensus 105 ~~~il~ii~G~~~G~~l~~p~~~~~rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aV 184 (317)
-+.+++|++|+|+|+++.+|.+..+|||++++++++|++++.. ..+.+|||+|||||.+|++|+++|+.+|++|
T Consensus 5 ~~~~~rIi~G~~kg~~l~~p~~~~~rpt~~~vrea~f~~l~~~------~~g~~vLDLfaGsG~lglea~srga~~v~~v 78 (189)
T TIGR00095 5 GSKKRIIIGGWRGGRLLKLPPGGSTRPTTRVVRELFFNILRPE------IQGAHLLDVFAGSGLLGEEALSRGAKVAFLE 78 (189)
T ss_pred CCceEEEEehhhCCcccCCCCCCCCCCchHHHHHHHHHHHHHh------cCCCEEEEecCCCcHHHHHHHhCCCCEEEEE
Confidence 3578999999999999999999999999999999999999764 5689999999999999999999999899999
Q ss_pred eCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeE
Q 021116 185 EMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSF 264 (317)
Q Consensus 185 Din~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ 264 (317)
|.|+.++ +.+++|++.+++.++++++++|+.+++.... .....||+|++||||....++++++.+....+|+++|+
T Consensus 79 E~~~~a~-~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~---~~~~~~dvv~~DPPy~~~~~~~~l~~l~~~~~l~~~~i 154 (189)
T TIGR00095 79 EDDRKAN-QTLKENLALLKSGEQAEVVRNSALRALKFLA---KKPTFDNVIYLDPPFFNGALQALLELCENNWILEDTVL 154 (189)
T ss_pred eCCHHHH-HHHHHHHHHhCCcccEEEEehhHHHHHHHhh---ccCCCceEEEECcCCCCCcHHHHHHHHHHCCCCCCCeE
Confidence 9999998 9999999999998789999999988875432 11234899999999988778888888877789999999
Q ss_pred EEEEeCCCCCccccCCCeEEEEEeecCceEEEEEe
Q 021116 265 IVVEYPLRTDMLDTCGCLVKIKDRRFGRTHLAIYG 299 (317)
Q Consensus 265 ivv~~~~~~~l~~~~~~~~~~~~r~yG~~~l~~~~ 299 (317)
+++|+.....++.....|.+.++++||++.+.||+
T Consensus 155 iv~E~~~~~~~~~~~~~~~~~~~r~yG~t~~~~~~ 189 (189)
T TIGR00095 155 IVVEEDREPELPPVEAWLSLKRQKKGGVSYLLYYQ 189 (189)
T ss_pred EEEEecCCCCCCCCcCCeEEEEEeecCcEEEEEEC
Confidence 99999877666544567999999999999999984
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-33 Score=248.71 Aligned_cols=179 Identities=23% Similarity=0.381 Sum_probs=160.3
Q ss_pred eEEEEeeeecceEEecCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCC
Q 021116 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMD 187 (317)
Q Consensus 108 il~ii~G~~~G~~l~~p~~~~~rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin 187 (317)
.+||++|+|+|+++.+|.+..+||+++.+++++|+++... ..+.+|||+|||+|.++++++++++.+|++||+|
T Consensus 12 ~mrIi~g~~~g~~l~~~~~~~~Rp~~d~v~e~l~~~l~~~------~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~ 85 (199)
T PRK10909 12 QIRIIGGQWRGRKLPVPDSPGLRPTTDRVRETLFNWLAPV------IVDARCLDCFAGSGALGLEALSRYAAGATLLEMD 85 (199)
T ss_pred CEEEEeeccCCCEeCCCCCCCcCcCCHHHHHHHHHHHhhh------cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECC
Confidence 4899999999999999998889999999999999999652 3578999999999999999989988899999999
Q ss_pred HHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEE
Q 021116 188 PWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVV 267 (317)
Q Consensus 188 ~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv 267 (317)
+.++ +.+++|++.+++. +++++++|+.+++... ...||+||+||||..+.++++++.|....+|++++++|+
T Consensus 86 ~~a~-~~a~~Nl~~~~~~-~v~~~~~D~~~~l~~~------~~~fDlV~~DPPy~~g~~~~~l~~l~~~~~l~~~~iv~v 157 (199)
T PRK10909 86 RAVA-QQLIKNLATLKAG-NARVVNTNALSFLAQP------GTPHNVVFVDPPFRKGLLEETINLLEDNGWLADEALIYV 157 (199)
T ss_pred HHHH-HHHHHHHHHhCCC-cEEEEEchHHHHHhhc------CCCceEEEECCCCCCChHHHHHHHHHHCCCcCCCcEEEE
Confidence 9998 9999999999985 5999999998876432 356999999999988888889999987789999999999
Q ss_pred EeCCCCCccccCCCeEEEEEeecCceEEEEEee
Q 021116 268 EYPLRTDMLDTCGCLVKIKDRRFGRTHLAIYGP 300 (317)
Q Consensus 268 ~~~~~~~l~~~~~~~~~~~~r~yG~~~l~~~~p 300 (317)
+++..+++++...+|.++++|+||++.++||..
T Consensus 158 e~~~~~~~~~~~~~~~~~~~k~yG~s~~~~~~~ 190 (199)
T PRK10909 158 ESEVENGLPTVPANWQLHREKVAGQVAYRLYIR 190 (199)
T ss_pred EecCCCCcccCCCccEEEEEecCCCEEEEEEEE
Confidence 999887776666779999999999999999985
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.1e-17 Score=146.40 Aligned_cols=137 Identities=20% Similarity=0.325 Sum_probs=106.0
Q ss_pred EEecCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCC-EEEEEeCCHHHHHHHHHHh
Q 021116 120 KLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCS-EVHFVEMDPWVVSNVLIPN 198 (317)
Q Consensus 120 ~l~~p~~~~~rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~-~V~aVDin~~al~~~ar~N 198 (317)
++.+++|.+.++..+.-.+.+.+.+... .+.+|||+|||+|.+++.++.++.. +|+++|+|+.++ +.+++|
T Consensus 3 ~~~~~~gvFs~~~~d~~t~lL~~~l~~~-------~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~-~~a~~n 74 (170)
T PF05175_consen 3 EFITHPGVFSPPRLDAGTRLLLDNLPKH-------KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDAL-ELAKRN 74 (170)
T ss_dssp EEEEETTSTTTTSHHHHHHHHHHHHHHH-------TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHH-HHHHHH
T ss_pred EEEECCCeeCCCCCCHHHHHHHHHHhhc-------cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHH-HHHHHH
Confidence 4566777887777777777777777652 5789999999999999998887765 799999999999 999999
Q ss_pred HHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCcc------HHHHHHHHHHcCCcCCCeEEEEEeCCC
Q 021116 199 LEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVD------YEVLMAQISKSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 199 ~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~------~~~~l~~L~~~~lLkpgG~ivv~~~~~ 272 (317)
++.+++++ ++++..|+.+.. ..++||+|++|||+..+. .+++++.. .++|+|||.+++..+..
T Consensus 75 ~~~n~~~~-v~~~~~d~~~~~--------~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a--~~~Lk~~G~l~lv~~~~ 143 (170)
T PF05175_consen 75 AERNGLEN-VEVVQSDLFEAL--------PDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQA--RRYLKPGGRLFLVINSH 143 (170)
T ss_dssp HHHTTCTT-EEEEESSTTTTC--------CTTCEEEEEE---SBTTSHCHHHHHHHHHHHH--HHHEEEEEEEEEEEETT
T ss_pred HHhcCccc-cccccccccccc--------cccceeEEEEccchhcccccchhhHHHHHHHH--HHhccCCCEEEEEeecC
Confidence 99999987 999999987653 247899999999987553 23333332 46899999998877755
Q ss_pred CCc
Q 021116 273 TDM 275 (317)
Q Consensus 273 ~~l 275 (317)
...
T Consensus 144 ~~~ 146 (170)
T PF05175_consen 144 LGY 146 (170)
T ss_dssp SCH
T ss_pred CCh
Confidence 543
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.5e-17 Score=163.08 Aligned_cols=112 Identities=27% Similarity=0.342 Sum_probs=94.9
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCC-CceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFL-DVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~-~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
.|++|||+||.||++++.|+..||++|+.||++..++ ++|++|++.||++ +++.++++|+++++.... ..+.+||
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al-~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~---~~g~~fD 292 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRAL-EWARENAELNGLDGDRHRFIVGDVFKWLRKAE---RRGEKFD 292 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHH-HHHHHHHHhcCCCccceeeehhhHHHHHHHHH---hcCCccc
Confidence 4899999999999999999999998999999999999 9999999999996 568999999999998774 2345899
Q ss_pred EEEECCC-CCCc---------cHHHHHHHHHHcCCcCCCeEEEEEeCCC
Q 021116 234 YMSVTPP-YTAV---------DYEVLMAQISKSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 234 lV~~dPP-y~~~---------~~~~~l~~L~~~~lLkpgG~ivv~~~~~ 272 (317)
+||+||| |... +|.+++.... ++|+|||++++..+..
T Consensus 293 lIilDPPsF~r~k~~~~~~~rdy~~l~~~~~--~iL~pgG~l~~~s~~~ 339 (393)
T COG1092 293 LIILDPPSFARSKKQEFSAQRDYKDLNDLAL--RLLAPGGTLVTSSCSR 339 (393)
T ss_pred EEEECCcccccCcccchhHHHHHHHHHHHHH--HHcCCCCEEEEEecCC
Confidence 9999999 5432 2455555544 5999999999877654
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.9e-17 Score=133.22 Aligned_cols=107 Identities=27% Similarity=0.401 Sum_probs=86.8
Q ss_pred CCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEE
Q 021116 156 PGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYM 235 (317)
Q Consensus 156 ~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV 235 (317)
|.+|||+|||+|.+.+.++..+..+++++|+|+.++ +.++.|+..+++.++++++++|+.+....+ ..++||+|
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~-~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~-----~~~~~D~I 74 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAV-ELARRNLPRNGLDDRVEVIVGDARDLPEPL-----PDGKFDLI 74 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHH-HHHHHHCHHCTTTTTEEEEESHHHHHHHTC-----TTT-EEEE
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHH-HHHHHHHHHccCCceEEEEECchhhchhhc-----cCceeEEE
Confidence 468999999999999999888866899999999998 999999999999888999999998876333 35789999
Q ss_pred EECCCCCCc---------cHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 236 SVTPPYTAV---------DYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 236 ~~dPPy~~~---------~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
++||||... .+...++.+. ++|++||.+++..+
T Consensus 75 v~npP~~~~~~~~~~~~~~~~~~~~~~~--~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 75 VTNPPYGPRSGDKAALRRLYSRFLEAAA--RLLKPGGVLVFITP 116 (117)
T ss_dssp EE--STTSBTT----GGCHHHHHHHHHH--HHEEEEEEEEEEEE
T ss_pred EECCCCccccccchhhHHHHHHHHHHHH--HHcCCCeEEEEEeC
Confidence 999999742 1344455544 58999999998764
|
... |
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.4e-17 Score=152.49 Aligned_cols=158 Identities=18% Similarity=0.232 Sum_probs=116.8
Q ss_pred CCCCCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHhHHHhCCC
Q 021116 127 MDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFL 205 (317)
Q Consensus 127 ~~~rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~-Ga~~V~aVDin~~al~~~ar~N~~~~gl~ 205 (317)
..+++++|.+.-+-|... ...++|||+|||+|.+++.++++ ...++++||++++++ +.|++|++.|+++
T Consensus 25 ~~~~~~~DaiLL~~~~~~---------~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a-~~A~~nv~ln~l~ 94 (248)
T COG4123 25 CGFRYGTDAILLAAFAPV---------PKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAA-EMAQRNVALNPLE 94 (248)
T ss_pred CccccccHHHHHHhhccc---------ccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHH-HHHHHHHHhCcch
Confidence 355888887654433222 24789999999999999988887 546899999999998 9999999999999
Q ss_pred CceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCcc-------------------HHHHHHHHHHcCCcCCCeEEE
Q 021116 206 DVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVD-------------------YEVLMAQISKSALVGKDSFIV 266 (317)
Q Consensus 206 ~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~-------------------~~~~l~~L~~~~lLkpgG~iv 266 (317)
++++++++|+.++.+... ..+||+|++||||.... +++.++.. ..+|++||.++
T Consensus 95 ~ri~v~~~Di~~~~~~~~-----~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a--~~~lk~~G~l~ 167 (248)
T COG4123 95 ERIQVIEADIKEFLKALV-----FASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAA--AKLLKPGGRLA 167 (248)
T ss_pred hceeEehhhHHHhhhccc-----ccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHH--HHHccCCCEEE
Confidence 999999999999986542 34699999999997421 23333332 46899999999
Q ss_pred EEeCCCCCccccCCCeEEEEEeecCceEEEEEeechhhh
Q 021116 267 VEYPLRTDMLDTCGCLVKIKDRRFGRTHLAIYGPDWAQK 305 (317)
Q Consensus 267 v~~~~~~~l~~~~~~~~~~~~r~yG~~~l~~~~p~~~~~ 305 (317)
+.++... +.++. ..++.-+++-.++.+..|...++
T Consensus 168 ~V~r~er-l~ei~---~~l~~~~~~~k~i~~V~p~~~k~ 202 (248)
T COG4123 168 FVHRPER-LAEII---ELLKSYNLEPKRIQFVYPKIGKA 202 (248)
T ss_pred EEecHHH-HHHHH---HHHHhcCCCceEEEEecCCCCCc
Confidence 9987543 22221 22334456667777776665554
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.5e-16 Score=155.77 Aligned_cols=141 Identities=12% Similarity=0.097 Sum_probs=110.0
Q ss_pred cceEEecCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHH
Q 021116 117 RRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLI 196 (317)
Q Consensus 117 ~G~~l~~p~~~~~rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar 196 (317)
.|.++....+.+ .-+...+++.+++.+..... ...+.+|||+|||+|.+++++++++ .+|++||+|+.++ +.|+
T Consensus 199 ~g~~~~~~~~~F-~Q~n~~~~~~l~~~~~~~l~---~~~~~~vLDL~cG~G~~~l~la~~~-~~v~~vE~~~~av-~~a~ 272 (374)
T TIGR02085 199 NDVPLVIRPQSF-FQTNPKVAAQLYATARQWVR---EIPVTQMWDLFCGVGGFGLHCAGPD-TQLTGIEIESEAI-ACAQ 272 (374)
T ss_pred CCEEEEECCCcc-ccCCHHHHHHHHHHHHHHHH---hcCCCEEEEccCCccHHHHHHhhcC-CeEEEEECCHHHH-HHHH
Confidence 355666666555 44556678888876543210 0246799999999999999998877 5799999999999 9999
Q ss_pred HhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCCCCC
Q 021116 197 PNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTD 274 (317)
Q Consensus 197 ~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~~~ 274 (317)
+|++.++++ +++++++|+.+++... ..+||+|++||||. +...+.++.+. .++|++++|++|+..+-
T Consensus 273 ~N~~~~~~~-~~~~~~~d~~~~~~~~------~~~~D~vi~DPPr~-G~~~~~l~~l~---~~~p~~ivyvsc~p~Tl 339 (374)
T TIGR02085 273 QSAQMLGLD-NLSFAALDSAKFATAQ------MSAPELVLVNPPRR-GIGKELCDYLS---QMAPKFILYSSCNAQTM 339 (374)
T ss_pred HHHHHcCCC-cEEEEECCHHHHHHhc------CCCCCEEEECCCCC-CCcHHHHHHHH---hcCCCeEEEEEeCHHHH
Confidence 999999985 5999999998876432 24699999999985 56677777776 47999999999997643
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=99.72 E-value=9e-17 Score=151.94 Aligned_cols=111 Identities=25% Similarity=0.367 Sum_probs=85.3
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCC-CceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFL-DVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~-~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
++++|||+||.||++++.|+..|+.+|+.||++..++ +++++|++.||++ +++++++.|+++++.... ..++||
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al-~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~----~~~~fD 197 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRAL-EWAKENAALNGLDLDRHRFIQGDVFKFLKRLK----KGGRFD 197 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHH-HHHHHHHHHTT-CCTCEEEEES-HHHHHHHHH----HTT-EE
T ss_pred CCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHH-HHHHHHHHHcCCCccceEEEecCHHHHHHHHh----cCCCCC
Confidence 5789999999999999999999999999999999999 9999999999986 679999999999987643 246899
Q ss_pred EEEECCC-CCCc------cHHHHHHHHHHcCCcCCCeEEEEEeCCC
Q 021116 234 YMSVTPP-YTAV------DYEVLMAQISKSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 234 lV~~dPP-y~~~------~~~~~l~~L~~~~lLkpgG~ivv~~~~~ 272 (317)
+||+||| |.++ .|.+++..+. ++|+|||++++.+.+.
T Consensus 198 ~IIlDPPsF~k~~~~~~~~y~~L~~~a~--~ll~~gG~l~~~scs~ 241 (286)
T PF10672_consen 198 LIILDPPSFAKSKFDLERDYKKLLRRAM--KLLKPGGLLLTCSCSH 241 (286)
T ss_dssp EEEE--SSEESSTCEHHHHHHHHHHHHH--HTEEEEEEEEEEE--T
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHHH--HhcCCCCEEEEEcCCc
Confidence 9999999 4332 3556665544 5899999988665543
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.8e-16 Score=148.26 Aligned_cols=142 Identities=18% Similarity=0.169 Sum_probs=110.1
Q ss_pred eecceEEecCCCC-CCCCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcC-CCEEEEEeCCHHHHH
Q 021116 115 KARRKKLLSPKGM-DVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVS 192 (317)
Q Consensus 115 ~~~G~~l~~p~~~-~~rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~G-a~~V~aVDin~~al~ 192 (317)
.|.|..+.+..+. .+||.++.+.+.+++.+... ....+|||+|||+|.+++.++... ..+|+++|+++.++
T Consensus 79 ~f~g~~f~v~~~vliPr~ete~lv~~~l~~~~~~------~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al- 151 (284)
T TIGR00536 79 EFYGLEFFVNEHVLIPRPETEELVEKALASLISQ------NPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDAL- 151 (284)
T ss_pred eEcCeEEEECCCCcCCCCccHHHHHHHHHHhhhc------CCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHH-
Confidence 4678888887766 47999999998887765431 123699999999999999887754 35899999999999
Q ss_pred HHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCcc--------------------------H
Q 021116 193 NVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVD--------------------------Y 246 (317)
Q Consensus 193 ~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~--------------------------~ 246 (317)
+.|++|++.+++.++++++++|+.+.+ ...+||+|++||||.... +
T Consensus 152 ~~a~~n~~~~~~~~~v~~~~~d~~~~~--------~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~ 223 (284)
T TIGR00536 152 AVAEENAEKNQLEHRVEFIQSNLFEPL--------AGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNIL 223 (284)
T ss_pred HHHHHHHHHcCCCCcEEEEECchhccC--------cCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHH
Confidence 999999999998777999999987643 123799999999996431 1
Q ss_pred HHHHHHHHHcCCcCCCeEEEEEeCCCC
Q 021116 247 EVLMAQISKSALVGKDSFIVVEYPLRT 273 (317)
Q Consensus 247 ~~~l~~L~~~~lLkpgG~ivv~~~~~~ 273 (317)
..+++. ..++|++||+++++....+
T Consensus 224 ~~ii~~--a~~~L~~gG~l~~e~g~~q 248 (284)
T TIGR00536 224 RQIIEL--APDYLKPNGFLVCEIGNWQ 248 (284)
T ss_pred HHHHHH--HHHhccCCCEEEEEECccH
Confidence 122222 2368999999999998653
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.3e-16 Score=144.85 Aligned_cols=143 Identities=20% Similarity=0.265 Sum_probs=104.5
Q ss_pred eecceEEecCCCCC-CCCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHc-CCCEEEEEeCCHHHHH
Q 021116 115 KARRKKLLSPKGMD-VRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVS 192 (317)
Q Consensus 115 ~~~G~~l~~p~~~~-~rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~-Ga~~V~aVDin~~al~ 192 (317)
.|+|.++.+.++.+ +|+.++.+.+.+.+++... ....+|||+|||+|.+++.+++. +..+|+++|+|+.++
T Consensus 51 ~f~g~~~~v~~~vf~pr~~Te~Lv~~~l~~~~~~------~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al- 123 (251)
T TIGR03704 51 EFCGLRIAVDPGVFVPRRRTEFLVDEAAALARPR------SGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAV- 123 (251)
T ss_pred eEcCeEEEECCCCcCCCccHHHHHHHHHHhhccc------CCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHH-
Confidence 46788898887765 5777888777777665431 23458999999999999987754 335799999999999
Q ss_pred HHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCcc-----------H------------HHH
Q 021116 193 NVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVD-----------Y------------EVL 249 (317)
Q Consensus 193 ~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~-----------~------------~~~ 249 (317)
+.|++|++.++ ++++++|+.+++... ..++||+|++||||.... + .+.
T Consensus 124 ~~A~~N~~~~~----~~~~~~D~~~~l~~~-----~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~ 194 (251)
T TIGR03704 124 RCARRNLADAG----GTVHEGDLYDALPTA-----LRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDV 194 (251)
T ss_pred HHHHHHHHHcC----CEEEEeechhhcchh-----cCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHH
Confidence 99999999876 368999987765321 125799999999996311 0 111
Q ss_pred HHHHH--HcCCcCCCeEEEEEeCCCC
Q 021116 250 MAQIS--KSALVGKDSFIVVEYPLRT 273 (317)
Q Consensus 250 l~~L~--~~~lLkpgG~ivv~~~~~~ 273 (317)
+..+. ..++|++||++++++....
T Consensus 195 ~~~i~~~a~~~L~~gG~l~l~~~~~~ 220 (251)
T TIGR03704 195 LRRVAAGAPDWLAPGGHLLVETSERQ 220 (251)
T ss_pred HHHHHHHHHHhcCCCCEEEEEECcch
Confidence 22222 2469999999999987543
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.8e-16 Score=153.29 Aligned_cols=108 Identities=19% Similarity=0.285 Sum_probs=87.6
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCC-CceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFL-DVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~-~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
++++|||+|||||.+++.++..|+.+|++||+|+.++ +.|++|++.||+. ++++++++|+.+++..+. ...++||
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al-~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~---~~~~~fD 295 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEAL-DIARQNVELNKLDLSKAEFVRDDVFKLLRTYR---DRGEKFD 295 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHHHHcCCCCCcEEEEEccHHHHHHHHH---hcCCCCC
Confidence 5789999999999999998888888999999999999 9999999999996 479999999999876542 1235799
Q ss_pred EEEECCCCCCcc----------HHHHHHHHHHcCCcCCCeEEEEE
Q 021116 234 YMSVTPPYTAVD----------YEVLMAQISKSALVGKDSFIVVE 268 (317)
Q Consensus 234 lV~~dPPy~~~~----------~~~~l~~L~~~~lLkpgG~ivv~ 268 (317)
+||+||||.... |.+++... .++|++||++++.
T Consensus 296 lVilDPP~f~~~k~~l~~~~~~y~~l~~~a--~~lLk~gG~lv~~ 338 (396)
T PRK15128 296 VIVMDPPKFVENKSQLMGACRGYKDINMLA--IQLLNPGGILLTF 338 (396)
T ss_pred EEEECCCCCCCChHHHHHHHHHHHHHHHHH--HHHcCCCeEEEEE
Confidence 999999985432 23333322 3589999988854
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.70 E-value=4e-16 Score=147.32 Aligned_cols=140 Identities=24% Similarity=0.346 Sum_probs=106.3
Q ss_pred eecceEEecCCCC-CCCCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCC-CEEEEEeCCHHHHH
Q 021116 115 KARRKKLLSPKGM-DVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGC-SEVHFVEMDPWVVS 192 (317)
Q Consensus 115 ~~~G~~l~~p~~~-~~rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga-~~V~aVDin~~al~ 192 (317)
.|.|.++.+..+. .+||.++.+.+++...+.. ...+|||+|||||.+++.++.... .+|+++|+|+.|+
T Consensus 77 ~f~gl~~~v~~~vliPr~dTe~Lve~~l~~~~~--------~~~~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al- 147 (280)
T COG2890 77 EFGGLRFKVDEGVLIPRPDTELLVEAALALLLQ--------LDKRILDLGTGSGAIAIALAKEGPDAEVIAVDISPDAL- 147 (280)
T ss_pred eecceeeeeCCCceecCCchHHHHHHHHHhhhh--------cCCcEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHH-
Confidence 5778999887765 5899999988887633322 112799999999999998887654 4899999999999
Q ss_pred HHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCcc----------H------------HHHH
Q 021116 193 NVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVD----------Y------------EVLM 250 (317)
Q Consensus 193 ~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~----------~------------~~~l 250 (317)
++|++|++.+|+ .++.++++|+++-+ .++||+|++||||-... + -+..
T Consensus 148 ~~A~~Na~~~~l-~~~~~~~~dlf~~~---------~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~ 217 (280)
T COG2890 148 ALARENAERNGL-VRVLVVQSDLFEPL---------RGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVY 217 (280)
T ss_pred HHHHHHHHHcCC-ccEEEEeeeccccc---------CCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHH
Confidence 999999999998 55677777866543 35899999999996432 1 1122
Q ss_pred HHHH--HcCCcCCCeEEEEEeCCCC
Q 021116 251 AQIS--KSALVGKDSFIVVEYPLRT 273 (317)
Q Consensus 251 ~~L~--~~~lLkpgG~ivv~~~~~~ 273 (317)
..+. ...+|+++|++++++...+
T Consensus 218 ~~i~~~a~~~l~~~g~l~le~g~~q 242 (280)
T COG2890 218 RRILGEAPDILKPGGVLILEIGLTQ 242 (280)
T ss_pred HHHHHhhHHHcCCCcEEEEEECCCc
Confidence 2222 2368999999999998554
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.6e-16 Score=146.48 Aligned_cols=140 Identities=20% Similarity=0.261 Sum_probs=104.3
Q ss_pred eecceEEecCCCC-CCCCChHHHHHHHHH-HHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcC-CCEEEEEeCCHHHH
Q 021116 115 KARRKKLLSPKGM-DVRPMMEVVKGAAFD-ILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVV 191 (317)
Q Consensus 115 ~~~G~~l~~p~~~-~~rpt~~~v~~alf~-~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~G-a~~V~aVDin~~al 191 (317)
.|.|..+.+..+. ..||.++.+....+. ++.. ..+.+|||+|||+|.+++.+++.. ..+|+++|+|+.++
T Consensus 86 ~f~g~~f~v~~~vlipr~~te~lv~~~l~~~~~~-------~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al 158 (284)
T TIGR03533 86 WFAGLEFYVDERVLIPRSPIAELIEDGFAPWLEP-------EPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDAL 158 (284)
T ss_pred eecCcEEEECCCCccCCCchHHHHHHHHHHHhcc-------CCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHH
Confidence 3558888887665 467766665555443 3322 235789999999999999888753 34899999999999
Q ss_pred HHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCcc--------------------------
Q 021116 192 SNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVD-------------------------- 245 (317)
Q Consensus 192 ~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~-------------------------- 245 (317)
+.|++|++.+++.++++++++|+.+.+ ...+||+|++||||....
T Consensus 159 -~~A~~n~~~~~~~~~i~~~~~D~~~~~--------~~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~ 229 (284)
T TIGR03533 159 -AVAEINIERHGLEDRVTLIQSDLFAAL--------PGRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDL 229 (284)
T ss_pred -HHHHHHHHHcCCCCcEEEEECchhhcc--------CCCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHH
Confidence 999999999999878999999986543 135799999999996421
Q ss_pred HHHHHHHHHHcCCcCCCeEEEEEeCCC
Q 021116 246 YEVLMAQISKSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 246 ~~~~l~~L~~~~lLkpgG~ivv~~~~~ 272 (317)
+..++..+ .++|++||+++++....
T Consensus 230 ~~~il~~a--~~~L~~gG~l~~e~g~~ 254 (284)
T TIGR03533 230 VRRILAEA--ADHLNENGVLVVEVGNS 254 (284)
T ss_pred HHHHHHHH--HHhcCCCCEEEEEECcC
Confidence 11222222 36899999999998753
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.4e-16 Score=137.93 Aligned_cols=124 Identities=16% Similarity=0.108 Sum_probs=106.7
Q ss_pred CChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceE
Q 021116 131 PMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSS 209 (317)
Q Consensus 131 pt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ 209 (317)
.|...++...++.|.. .++.+++|+|||||++++|++..+ ..+|+++|.|++++ +..++|++++|++ +++
T Consensus 17 ~TK~EIRal~ls~L~~-------~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~-~~~~~N~~~fg~~-n~~ 87 (187)
T COG2242 17 MTKEEIRALTLSKLRP-------RPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEAL-ELIERNAARFGVD-NLE 87 (187)
T ss_pred CcHHHHHHHHHHhhCC-------CCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHH-HHHHHHHHHhCCC-cEE
Confidence 4889999999999986 578999999999999999987544 45899999999999 9999999999975 599
Q ss_pred EEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCCCCCc
Q 021116 210 IHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDM 275 (317)
Q Consensus 210 ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~~~l 275 (317)
++.+|+.+.+... .+||.||+.. ...++.+++.+.+ .|++||++++....-+++
T Consensus 88 vv~g~Ap~~L~~~-------~~~daiFIGG---g~~i~~ile~~~~--~l~~ggrlV~naitlE~~ 141 (187)
T COG2242 88 VVEGDAPEALPDL-------PSPDAIFIGG---GGNIEEILEAAWE--RLKPGGRLVANAITLETL 141 (187)
T ss_pred EEeccchHhhcCC-------CCCCEEEECC---CCCHHHHHHHHHH--HcCcCCeEEEEeecHHHH
Confidence 9999999988532 3799999984 3688899988765 799999999998876654
|
|
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.67 E-value=6e-16 Score=146.62 Aligned_cols=165 Identities=16% Similarity=0.185 Sum_probs=115.1
Q ss_pred eeeeccccccccc-ccceEEEEeeeecceEEecCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHH
Q 021116 92 LVVSDEKSQEERT-THRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVG 170 (317)
Q Consensus 92 ~~~~~~~~~~p~~-~~~il~ii~G~~~G~~l~~p~~~~~rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~ 170 (317)
....+.....|.. ....+++..|. ..|.+++||+....+++-+.+ .++.+|||+|||||.++
T Consensus 115 f~I~Psw~~~~~~~~~~~i~lDPGl--------AFGTG~HpTT~lcL~~Le~~~---------~~g~~vlDvGcGSGILa 177 (300)
T COG2264 115 FVIVPSWREYPEPSDELNIELDPGL--------AFGTGTHPTTSLCLEALEKLL---------KKGKTVLDVGCGSGILA 177 (300)
T ss_pred EEECCCCccCCCCCCceEEEEcccc--------ccCCCCChhHHHHHHHHHHhh---------cCCCEEEEecCChhHHH
Confidence 5666665444444 45556676665 356789999998777765544 35899999999999999
Q ss_pred HHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCccHHHHH
Q 021116 171 IEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLM 250 (317)
Q Consensus 171 Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l 250 (317)
|.+++.|+.+|+++|+||.|+ +.|++|++.|++...++.-..+..... ..++||+|++|- +.+.+
T Consensus 178 IAa~kLGA~~v~g~DiDp~AV-~aa~eNa~~N~v~~~~~~~~~~~~~~~--------~~~~~DvIVANI------LA~vl 242 (300)
T COG2264 178 IAAAKLGAKKVVGVDIDPQAV-EAARENARLNGVELLVQAKGFLLLEVP--------ENGPFDVIVANI------LAEVL 242 (300)
T ss_pred HHHHHcCCceEEEecCCHHHH-HHHHHHHHHcCCchhhhcccccchhhc--------ccCcccEEEehh------hHHHH
Confidence 999999999999999999999 999999999999742223333333322 136899999983 33333
Q ss_pred HHHHH--cCCcCCCeEEEEEeCCCCCccc-----cCCCeEEEEEe
Q 021116 251 AQISK--SALVGKDSFIVVEYPLRTDMLD-----TCGCLVKIKDR 288 (317)
Q Consensus 251 ~~L~~--~~lLkpgG~ivv~~~~~~~l~~-----~~~~~~~~~~r 288 (317)
..|.. .+.++|||+++++--..+.... ...+|.+.+..
T Consensus 243 ~~La~~~~~~lkpgg~lIlSGIl~~q~~~V~~a~~~~gf~v~~~~ 287 (300)
T COG2264 243 VELAPDIKRLLKPGGRLILSGILEDQAESVAEAYEQAGFEVVEVL 287 (300)
T ss_pred HHHHHHHHHHcCCCceEEEEeehHhHHHHHHHHHHhCCCeEeEEE
Confidence 33321 3689999999998655443221 12567665543
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.2e-15 Score=142.38 Aligned_cols=225 Identities=13% Similarity=0.150 Sum_probs=149.0
Q ss_pred eeeeeeccccccccceEEeeccCCCCCChHHHHHHHHHcCCCCCCc-ccCCChhhhhhhh---ccCCc----------ee
Q 021116 28 FSTSFTKPISQKRYPLIVFSYKSGTGLTSEDKKELLKRYGLDPDEF-LSEPSPKTRRRKE---GRGSK----------LV 93 (317)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~-~~~~~~~~~~~~~---~~~g~----------~~ 93 (317)
+.++...+.. ..-++.-+.|.+.+.+...++++|..-.-+-.++ +|+....-++... .-.+- ..
T Consensus 27 ~~~~~~~~~~--~~d~~l~~~pK~~~e~e~qLa~ll~~~~~g~~i~v~g~~~~g~~s~~k~l~~~~~~~~~~~a~~~~~~ 104 (300)
T COG2813 27 FLVAPADAPD--DFDAVLLYWPKHKAEAEFQLAQLLARLPPGGEIVVVGEKRDGVRSAEKMLEKYGGPTKTDSARHCMRL 104 (300)
T ss_pred cccccccccC--CCCEEEEEccCchHHHHHHHHHHHhhCCCCCeEEEEecccchHHHHHHHHHHhcCccccchHhhccee
Confidence 3333444444 6678899999999999999999999988888777 6666654333222 11111 11
Q ss_pred eecccccccccccceEEEEeeee--cceEEecCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHH
Q 021116 94 VSDEKSQEERTTHRLLQVLGGKA--RRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGI 171 (317)
Q Consensus 94 ~~~~~~~~p~~~~~il~ii~G~~--~G~~l~~p~~~~~rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~I 171 (317)
..-.+..++..... .+.... ...++.+.+|.+-+-..|.=-+.+...+.. ..+.+|||+|||.|.+|+
T Consensus 105 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~t~pGVFS~~~lD~GS~lLl~~l~~-------~~~~~vlDlGCG~Gvlg~ 174 (300)
T COG2813 105 HYYSENPPPFADEP---EWKVYLLGHELTFKTLPGVFSRDKLDKGSRLLLETLPP-------DLGGKVLDLGCGYGVLGL 174 (300)
T ss_pred EeecCCCCcccchh---hhhhhhccCceEEEeCCCCCcCCCcChHHHHHHHhCCc-------cCCCcEEEeCCCccHHHH
Confidence 11111111111111 001111 234666777777666666656666666654 234599999999999999
Q ss_pred HHHHcC-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCcc--HHH
Q 021116 172 EAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVD--YEV 248 (317)
Q Consensus 172 eaas~G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~--~~~ 248 (317)
.+++.. ..+++.+|+|..|+ +.+|+|++.|++++. .++..|+.+-. .++||.|++||||+.+. ...
T Consensus 175 ~la~~~p~~~vtmvDvn~~Av-~~ar~Nl~~N~~~~~-~v~~s~~~~~v---------~~kfd~IisNPPfh~G~~v~~~ 243 (300)
T COG2813 175 VLAKKSPQAKLTLVDVNARAV-ESARKNLAANGVENT-EVWASNLYEPV---------EGKFDLIISNPPFHAGKAVVHS 243 (300)
T ss_pred HHHHhCCCCeEEEEecCHHHH-HHHHHhHHHcCCCcc-EEEEecccccc---------cccccEEEeCCCccCCcchhHH
Confidence 988865 56899999999999 999999999999864 67888876643 24899999999998752 121
Q ss_pred HH-HHHH-HcCCcCCCeEEEEEeCCCCCc
Q 021116 249 LM-AQIS-KSALVGKDSFIVVEYPLRTDM 275 (317)
Q Consensus 249 ~l-~~L~-~~~lLkpgG~ivv~~~~~~~l 275 (317)
+- +++. +.+.|++||.+++..+..-.+
T Consensus 244 ~~~~~i~~A~~~L~~gGeL~iVan~~l~y 272 (300)
T COG2813 244 LAQEIIAAAARHLKPGGELWIVANRHLPY 272 (300)
T ss_pred HHHHHHHHHHHhhccCCEEEEEEcCCCCh
Confidence 11 2222 347899999999988844443
|
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=2e-15 Score=144.32 Aligned_cols=140 Identities=21% Similarity=0.269 Sum_probs=104.1
Q ss_pred eecceEEecCCCC-CCCCChHHHHHHHHH-HHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcC-CCEEEEEeCCHHHH
Q 021116 115 KARRKKLLSPKGM-DVRPMMEVVKGAAFD-ILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVV 191 (317)
Q Consensus 115 ~~~G~~l~~p~~~-~~rpt~~~v~~alf~-~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~G-a~~V~aVDin~~al 191 (317)
.|.|..+.+.++. ..||.++.+....+. ++.. ....+|||+|||+|.+++.++... ..+|+++|+|+.++
T Consensus 98 ~F~g~~f~v~~~vlipr~~te~lv~~~l~~~~~~-------~~~~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al 170 (307)
T PRK11805 98 WFCGLEFYVDERVLVPRSPIAELIEDGFAPWLED-------PPVTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDAL 170 (307)
T ss_pred eEcCcEEEECCCCcCCCCchHHHHHHHHHHHhcc-------CCCCEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHH
Confidence 3568888887665 467766665555543 3322 123689999999999999887653 45899999999999
Q ss_pred HHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCc-c-------------------------
Q 021116 192 SNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAV-D------------------------- 245 (317)
Q Consensus 192 ~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~-~------------------------- 245 (317)
+.|++|++.+++.++++++++|+.+.+. ..+||+|++||||... .
T Consensus 171 -~~A~~n~~~~~l~~~i~~~~~D~~~~l~--------~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~ 241 (307)
T PRK11805 171 -AVAEINIERHGLEDRVTLIESDLFAALP--------GRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDL 241 (307)
T ss_pred -HHHHHHHHHhCCCCcEEEEECchhhhCC--------CCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHH
Confidence 9999999999988789999999866431 3579999999999632 1
Q ss_pred HHHHHHHHHHcCCcCCCeEEEEEeCCC
Q 021116 246 YEVLMAQISKSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 246 ~~~~l~~L~~~~lLkpgG~ivv~~~~~ 272 (317)
+..++..+ .++|+|||+++++....
T Consensus 242 ~~~i~~~a--~~~L~pgG~l~~E~g~~ 266 (307)
T PRK11805 242 VRRILAEA--PDYLTEDGVLVVEVGNS 266 (307)
T ss_pred HHHHHHHH--HHhcCCCCEEEEEECcC
Confidence 12223322 36899999999998754
|
|
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.6e-15 Score=147.94 Aligned_cols=141 Identities=18% Similarity=0.180 Sum_probs=104.4
Q ss_pred eEEecCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHh
Q 021116 119 KKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPN 198 (317)
Q Consensus 119 ~~l~~p~~~~~rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N 198 (317)
.++..+.+.++++-. .+.+.+++++..... ..+.+|||+|||+|.+++ ++++++.+|++||+++.++ +.|++|
T Consensus 175 ~~~~~~~~sF~Q~N~-~~~e~l~~~v~~~~~----~~~~~vLDl~~G~G~~sl-~la~~~~~v~~vE~~~~ai-~~a~~N 247 (362)
T PRK05031 175 FIYRQVENSFTQPNA-AVNEKMLEWALDATK----GSKGDLLELYCGNGNFTL-ALARNFRRVLATEISKPSV-AAAQYN 247 (362)
T ss_pred EEEEeCCCCeeccCH-HHHHHHHHHHHHHhh----cCCCeEEEEeccccHHHH-HHHhhCCEEEEEECCHHHH-HHHHHH
Confidence 355555555655543 356677776654310 123579999999999999 5556677999999999999 999999
Q ss_pred HHHhCCCCceEEEEecHHHHHHHHhhhcC---------CCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 199 LEWTGFLDVSSIHTVRVETFLERAEQFVG---------KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 199 ~~~~gl~~~v~ii~gD~~~~l~~~~~~~~---------~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
++.++++ +++++.+|+.+++..+.+... ....||+||+|||| .+..+++++.|. ++++++|++|
T Consensus 248 ~~~~~~~-~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR-~G~~~~~l~~l~-----~~~~ivyvSC 320 (362)
T PRK05031 248 IAANGID-NVQIIRMSAEEFTQAMNGVREFNRLKGIDLKSYNFSTIFVDPPR-AGLDDETLKLVQ-----AYERILYISC 320 (362)
T ss_pred HHHhCCC-cEEEEECCHHHHHHHHhhcccccccccccccCCCCCEEEECCCC-CCCcHHHHHHHH-----ccCCEEEEEe
Confidence 9999986 599999999998765321000 01258999999998 467788888875 3689999999
Q ss_pred CCCC
Q 021116 270 PLRT 273 (317)
Q Consensus 270 ~~~~ 273 (317)
+..+
T Consensus 321 ~p~t 324 (362)
T PRK05031 321 NPET 324 (362)
T ss_pred CHHH
Confidence 9743
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.2e-15 Score=142.21 Aligned_cols=142 Identities=14% Similarity=0.132 Sum_probs=103.6
Q ss_pred ceEEecCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHH
Q 021116 118 RKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIP 197 (317)
Q Consensus 118 G~~l~~p~~~~~rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~ 197 (317)
|..+....+.++. +...+.+.+++.+..... ..++.+|||+|||+|.+++.+++.+ .+|+++|+++.++ +.|++
T Consensus 140 ~~~~~~~~~sF~Q-~n~~~~~~l~~~v~~~l~---~~~~~~VLDl~cG~G~~sl~la~~~-~~V~gvD~s~~av-~~A~~ 213 (315)
T PRK03522 140 GVPLFIRPQSFFQ-TNPAVAAQLYATARDWVR---ELPPRSMWDLFCGVGGFGLHCATPG-MQLTGIEISAEAI-ACAKQ 213 (315)
T ss_pred CEEEEECCCeeee-cCHHHHHHHHHHHHHHHH---hcCCCEEEEccCCCCHHHHHHHhcC-CEEEEEeCCHHHH-HHHHH
Confidence 4455555544433 333344555543322100 0346899999999999999998887 5899999999999 99999
Q ss_pred hHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCCCCCcc
Q 021116 198 NLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDML 276 (317)
Q Consensus 198 N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~~~l~ 276 (317)
|++.+++ ++++++++|+.++.... .+.||+|++|||+. +....+++.+. .+.+++++|++|+..+...
T Consensus 214 n~~~~~l-~~v~~~~~D~~~~~~~~------~~~~D~Vv~dPPr~-G~~~~~~~~l~---~~~~~~ivyvsc~p~t~~r 281 (315)
T PRK03522 214 SAAELGL-TNVQFQALDSTQFATAQ------GEVPDLVLVNPPRR-GIGKELCDYLS---QMAPRFILYSSCNAQTMAK 281 (315)
T ss_pred HHHHcCC-CceEEEEcCHHHHHHhc------CCCCeEEEECCCCC-CccHHHHHHHH---HcCCCeEEEEECCcccchh
Confidence 9999998 46999999998876422 24699999999975 44456666665 3688999999999876543
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1e-15 Score=160.82 Aligned_cols=109 Identities=18% Similarity=0.272 Sum_probs=91.8
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCC-CceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFL-DVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~-~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
++++|||+|||||.+++.+++.|+.+|++||+|+.++ +.|++|++.||+. ++++++++|+.+++... .++||
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al-~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~------~~~fD 610 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYL-EWAERNFALNGLSGRQHRLIQADCLAWLKEA------REQFD 610 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHH-HHHHHHHHHhCCCccceEEEEccHHHHHHHc------CCCcC
Confidence 5789999999999999999998888999999999999 9999999999997 67999999999987543 36899
Q ss_pred EEEECCCCCCc------------cHHHHHHHHHHcCCcCCCeEEEEEeCCC
Q 021116 234 YMSVTPPYTAV------------DYEVLMAQISKSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 234 lV~~dPPy~~~------------~~~~~l~~L~~~~lLkpgG~ivv~~~~~ 272 (317)
+||+||||... .|.+++..+. ++|+|||++++++...
T Consensus 611 lIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~--~lL~~gG~l~~~~~~~ 659 (702)
T PRK11783 611 LIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAK--RLLRPGGTLYFSNNKR 659 (702)
T ss_pred EEEECCCCCCCCCccchhhhHHHHHHHHHHHHH--HHcCCCCEEEEEeCCc
Confidence 99999998532 2344444433 5899999999887754
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.3e-15 Score=152.76 Aligned_cols=150 Identities=17% Similarity=0.206 Sum_probs=111.3
Q ss_pred eecceEEecCCCC-CCCCChHHHHHHHHHHHhhcC---------------CCCC--CCCCCeEEEECCCcchHHHHHHHc
Q 021116 115 KARRKKLLSPKGM-DVRPMMEVVKGAAFDILQSAG---------------GCPA--SLRPGRWLDLYSGTGSVGIEAISR 176 (317)
Q Consensus 115 ~~~G~~l~~p~~~-~~rpt~~~v~~alf~~L~~~~---------------~~~~--~~~~~rVLDlgcGtG~l~Ieaas~ 176 (317)
.|.|..+.+..+. ..||.|+.+.+.+.+.+.... .+.. ..++.+|||+|||||.+++.+++.
T Consensus 80 ~F~g~~f~V~~~VLIPRpeTE~Lve~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDlG~GsG~iai~la~~ 159 (506)
T PRK01544 80 EFYSREFIVNKHVLIPRSDTEVLVDVVFQCHSRESGNPEKKQLNPCFRGNDISSNCNDKFLNILELGTGSGCIAISLLCE 159 (506)
T ss_pred EEcCcEEEeCCCcccCCCcHHHHHHHHHHHhhhccccccccccccccccccccccccCCCCEEEEccCchhHHHHHHHHH
Confidence 5789999998776 589999999998877653100 0000 113468999999999999987754
Q ss_pred -CCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCcc----------
Q 021116 177 -GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVD---------- 245 (317)
Q Consensus 177 -Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~---------- 245 (317)
...+|+++|+|+.++ +.|++|++.+++.++++++++|+.+.+ ..++||+|++||||....
T Consensus 160 ~p~~~v~avDis~~al-~~A~~N~~~~~l~~~v~~~~~D~~~~~--------~~~~fDlIvsNPPYi~~~~~~~l~~~v~ 230 (506)
T PRK01544 160 LPNANVIATDISLDAI-EVAKSNAIKYEVTDRIQIIHSNWFENI--------EKQKFDFIVSNPPYISHSEKSEMAIETI 230 (506)
T ss_pred CCCCeEEEEECCHHHH-HHHHHHHHHcCCccceeeeecchhhhC--------cCCCccEEEECCCCCCchhhhhcCchhh
Confidence 445899999999999 999999999998888999999986543 135799999999997421
Q ss_pred -HH------------HHHHHHH--HcCCcCCCeEEEEEeCCCC
Q 021116 246 -YE------------VLMAQIS--KSALVGKDSFIVVEYPLRT 273 (317)
Q Consensus 246 -~~------------~~l~~L~--~~~lLkpgG~ivv~~~~~~ 273 (317)
++ +....+. ..++|+|||+++++....+
T Consensus 231 ~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~~q 273 (506)
T PRK01544 231 NYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGFKQ 273 (506)
T ss_pred ccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECCch
Confidence 10 1112222 2368999999999987543
|
|
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.5e-15 Score=147.27 Aligned_cols=144 Identities=18% Similarity=0.205 Sum_probs=107.9
Q ss_pred EEEEee-eecceEEecCCCC-CCCCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHc-CCCEEEEEe
Q 021116 109 LQVLGG-KARRKKLLSPKGM-DVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVE 185 (317)
Q Consensus 109 l~ii~G-~~~G~~l~~p~~~-~~rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~-Ga~~V~aVD 185 (317)
-+|++- .|.|.++.+.++. .+||.++.+.+.+.+.+. ++.+|||+|||||.+++.++.. ...+|+++|
T Consensus 212 qYIlG~~~F~G~~f~V~p~vLIPRpeTE~LVe~aL~~l~---------~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVD 282 (423)
T PRK14966 212 AYILGVREFYGRRFAVNPNVLIPRPETEHLVEAVLARLP---------ENGRVWDLGTGSGAVAVTVALERPDAFVRASD 282 (423)
T ss_pred eeEeeeeeecCcEEEeCCCccCCCccHHHHHHHhhhccC---------CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEE
Confidence 344332 4679999886655 589999999888876653 3569999999999999987654 456899999
Q ss_pred CCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCcc--------------------
Q 021116 186 MDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVD-------------------- 245 (317)
Q Consensus 186 in~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~-------------------- 245 (317)
+|+.++ +.|++|++.++. +++++++|+.+.... ..++||+|++||||....
T Consensus 283 iS~~AL-e~AreNa~~~g~--rV~fi~gDl~e~~l~------~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG 353 (423)
T PRK14966 283 ISPPAL-ETARKNAADLGA--RVEFAHGSWFDTDMP------SEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDF 353 (423)
T ss_pred CCHHHH-HHHHHHHHHcCC--cEEEEEcchhccccc------cCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCC
Confidence 999999 999999998875 589999998653210 125799999999995321
Q ss_pred ------HHHHHHHHHHcCCcCCCeEEEEEeCCC
Q 021116 246 ------YEVLMAQISKSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 246 ------~~~~l~~L~~~~lLkpgG~ivv~~~~~ 272 (317)
+..+++.+ .++|+|||++++|....
T Consensus 354 ~dGL~~yr~Ii~~a--~~~LkpgG~lilEiG~~ 384 (423)
T PRK14966 354 SDGLSCIRTLAQGA--PDRLAEGGFLLLEHGFD 384 (423)
T ss_pred CchHHHHHHHHHHH--HHhcCCCcEEEEEECcc
Confidence 12222222 35899999999998764
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.6e-16 Score=151.00 Aligned_cols=169 Identities=19% Similarity=0.238 Sum_probs=110.7
Q ss_pred ceeeecccccccc-cccceEEEEeeeecceEEecCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchH
Q 021116 91 KLVVSDEKSQEER-TTHRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSV 169 (317)
Q Consensus 91 ~~~~~~~~~~~p~-~~~~il~ii~G~~~G~~l~~p~~~~~rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l 169 (317)
+....+.....|. .....+.|..|. ..|.+++|||....+.+-... .++++|||+|||||.+
T Consensus 113 ~~~I~P~w~~~~~~~~~~~I~idPg~--------AFGTG~H~TT~lcl~~l~~~~---------~~g~~vLDvG~GSGIL 175 (295)
T PF06325_consen 113 RLVIVPSWEEYPEPPDEIVIEIDPGM--------AFGTGHHPTTRLCLELLEKYV---------KPGKRVLDVGCGSGIL 175 (295)
T ss_dssp TEEEEETT----SSTTSEEEEESTTS--------SS-SSHCHHHHHHHHHHHHHS---------STTSEEEEES-TTSHH
T ss_pred cEEEECCCcccCCCCCcEEEEECCCC--------cccCCCCHHHHHHHHHHHHhc---------cCCCEEEEeCCcHHHH
Confidence 3566666444444 333345555543 355678999998887775553 3578999999999999
Q ss_pred HHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCccHHHH
Q 021116 170 GIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVL 249 (317)
Q Consensus 170 ~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~ 249 (317)
+|.|++.|+++|+++|+||.++ +.|++|++.||+.+++.+. ...+. ..++||+|++|- ....+..+
T Consensus 176 aiaA~klGA~~v~a~DiDp~Av-~~a~~N~~~N~~~~~~~v~--~~~~~---------~~~~~dlvvANI--~~~vL~~l 241 (295)
T PF06325_consen 176 AIAAAKLGAKKVVAIDIDPLAV-EAARENAELNGVEDRIEVS--LSEDL---------VEGKFDLVVANI--LADVLLEL 241 (295)
T ss_dssp HHHHHHTTBSEEEEEESSCHHH-HHHHHHHHHTT-TTCEEES--CTSCT---------CCS-EEEEEEES---HHHHHHH
T ss_pred HHHHHHcCCCeEEEecCCHHHH-HHHHHHHHHcCCCeeEEEE--Eeccc---------ccccCCEEEECC--CHHHHHHH
Confidence 9999999999999999999999 9999999999999877553 11111 137899999983 11112222
Q ss_pred HHHHHHcCCcCCCeEEEEEeCCCCCccc----cCCCeEEEEEeecCc
Q 021116 250 MAQISKSALVGKDSFIVVEYPLRTDMLD----TCGCLVKIKDRRFGR 292 (317)
Q Consensus 250 l~~L~~~~lLkpgG~ivv~~~~~~~l~~----~~~~~~~~~~r~yG~ 292 (317)
...+. ++|+|||+++++--..+...+ ...+|.+.+.+.-|+
T Consensus 242 ~~~~~--~~l~~~G~lIlSGIl~~~~~~v~~a~~~g~~~~~~~~~~~ 286 (295)
T PF06325_consen 242 APDIA--SLLKPGGYLILSGILEEQEDEVIEAYKQGFELVEEREEGE 286 (295)
T ss_dssp HHHCH--HHEEEEEEEEEEEEEGGGHHHHHHHHHTTEEEEEEEEETT
T ss_pred HHHHH--HhhCCCCEEEEccccHHHHHHHHHHHHCCCEEEEEEEECC
Confidence 22222 479999999998655444322 123777766655443
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.9e-15 Score=149.57 Aligned_cols=141 Identities=18% Similarity=0.168 Sum_probs=107.3
Q ss_pred ecceEEecCCCCCCCC---ChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHH
Q 021116 116 ARRKKLLSPKGMDVRP---MMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVS 192 (317)
Q Consensus 116 ~~G~~l~~p~~~~~rp---t~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~ 192 (317)
+.|..+....+.+... .++.+.+.+.+++.. .++.+|||+|||+|.+++.++..+ .+|+++|+|+.++
T Consensus 262 ~~g~~f~~~~~~F~q~n~~~~e~l~~~vl~~l~~-------~~~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al- 332 (443)
T PRK13168 262 EFGLRLAFSPRDFIQVNAQVNQKMVARALEWLDP-------QPGDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMV- 332 (443)
T ss_pred cCCeEEEECCCCeEEcCHHHHHHHHHHHHHHhcC-------CCCCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHH-
Confidence 4566777666655433 345566666666643 357899999999999999888776 5899999999999
Q ss_pred HHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCCC
Q 021116 193 NVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 193 ~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~ 272 (317)
+.|++|++.+++.+ ++++++|+.+.+... +..+.+||+|++||||.. ..+.++.+. .+++++++|++|+..
T Consensus 333 ~~A~~n~~~~~~~~-v~~~~~d~~~~l~~~---~~~~~~fD~Vi~dPPr~g--~~~~~~~l~---~~~~~~ivyvSCnp~ 403 (443)
T PRK13168 333 ERARENARRNGLDN-VTFYHANLEEDFTDQ---PWALGGFDKVLLDPPRAG--AAEVMQALA---KLGPKRIVYVSCNPA 403 (443)
T ss_pred HHHHHHHHHcCCCc-eEEEEeChHHhhhhh---hhhcCCCCEEEECcCCcC--hHHHHHHHH---hcCCCeEEEEEeChH
Confidence 99999999999864 999999998765321 011357999999999964 345667765 379999999999876
Q ss_pred CC
Q 021116 273 TD 274 (317)
Q Consensus 273 ~~ 274 (317)
+-
T Consensus 404 tl 405 (443)
T PRK13168 404 TL 405 (443)
T ss_pred Hh
Confidence 53
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.4e-15 Score=146.35 Aligned_cols=141 Identities=15% Similarity=0.136 Sum_probs=102.7
Q ss_pred eEEecCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHH
Q 021116 119 KKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIP 197 (317)
Q Consensus 119 ~~l~~p~~~~~rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~G-a~~V~aVDin~~al~~~ar~ 197 (317)
..+....|.+-+-..+.=.+.+.+.+.. ..+.+|||+|||+|.+++.+++++ ..+|+++|+|+.|+ +.|++
T Consensus 199 ~~~~~~~gVFs~~~LD~GtrllL~~lp~-------~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av-~~A~~ 270 (378)
T PRK15001 199 WTIHNHANVFSRTGLDIGARFFMQHLPE-------NLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAV-ASSRL 270 (378)
T ss_pred EEEEecCCccCCCCcChHHHHHHHhCCc-------ccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHH-HHHHH
Confidence 4556667776666666555566555543 234699999999999999988765 45899999999999 99999
Q ss_pred hHHHhCCC--CceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCcc---HHHHHHHHH-HcCCcCCCeEEEEEeCC
Q 021116 198 NLEWTGFL--DVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVD---YEVLMAQIS-KSALVGKDSFIVVEYPL 271 (317)
Q Consensus 198 N~~~~gl~--~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~---~~~~l~~L~-~~~lLkpgG~ivv~~~~ 271 (317)
|++.|+.. ++++++.+|+.+.+ ...+||+|++||||+.+. .....+.+. ..+.|++||.+++..+.
T Consensus 271 N~~~n~~~~~~~v~~~~~D~l~~~--------~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~nr 342 (378)
T PRK15001 271 NVETNMPEALDRCEFMINNALSGV--------EPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANR 342 (378)
T ss_pred HHHHcCcccCceEEEEEccccccC--------CCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEec
Confidence 99988754 36889989876532 135799999999998642 121222232 24689999999999875
Q ss_pred CCCc
Q 021116 272 RTDM 275 (317)
Q Consensus 272 ~~~l 275 (317)
...+
T Consensus 343 ~l~y 346 (378)
T PRK15001 343 HLDY 346 (378)
T ss_pred CcCH
Confidence 5443
|
|
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.4e-15 Score=143.83 Aligned_cols=139 Identities=18% Similarity=0.143 Sum_probs=102.2
Q ss_pred eEEecCCCCCCCCCh---HHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHH
Q 021116 119 KKLLSPKGMDVRPMM---EVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVL 195 (317)
Q Consensus 119 ~~l~~p~~~~~rpt~---~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~a 195 (317)
.++..+.+.+.++-. +.+.+.+.+++.. .+.+|||+|||+|.+++ ++++++.+|++||++++++ +.|
T Consensus 166 ~~~~~~~~~F~Q~N~~~~~~l~~~v~~~~~~--------~~~~vlDl~~G~G~~sl-~la~~~~~v~~vE~~~~av-~~a 235 (353)
T TIGR02143 166 FIYRQVENSFTQPNAAVNIKMLEWACEVTQG--------SKGDLLELYCGNGNFSL-ALAQNFRRVLATEIAKPSV-NAA 235 (353)
T ss_pred EEEEECCCCcccCCHHHHHHHHHHHHHHhhc--------CCCcEEEEeccccHHHH-HHHHhCCEEEEEECCHHHH-HHH
Confidence 456666666654443 4455555555532 23479999999999999 5555567899999999999 999
Q ss_pred HHhHHHhCCCCceEEEEecHHHHHHHHhh---h------cCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEE
Q 021116 196 IPNLEWTGFLDVSSIHTVRVETFLERAEQ---F------VGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIV 266 (317)
Q Consensus 196 r~N~~~~gl~~~v~ii~gD~~~~l~~~~~---~------~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~iv 266 (317)
++|++.+++++ ++++++|+.+++....+ + +.....||+||+|||+ .+..+++++.+. ++++++|
T Consensus 236 ~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPPR-~G~~~~~l~~l~-----~~~~ivY 308 (353)
T TIGR02143 236 QYNIAANNIDN-VQIIRMSAEEFTQAMNGVREFRRLKGIDLKSYNCSTIFVDPPR-AGLDPDTCKLVQ-----AYERILY 308 (353)
T ss_pred HHHHHHcCCCc-EEEEEcCHHHHHHHHhhccccccccccccccCCCCEEEECCCC-CCCcHHHHHHHH-----cCCcEEE
Confidence 99999999865 99999999998754210 0 0001248999999995 566778888774 4799999
Q ss_pred EEeCCCCC
Q 021116 267 VEYPLRTD 274 (317)
Q Consensus 267 v~~~~~~~ 274 (317)
++|+..+-
T Consensus 309 vsC~p~tl 316 (353)
T TIGR02143 309 ISCNPETL 316 (353)
T ss_pred EEcCHHHH
Confidence 99997653
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.3e-14 Score=137.28 Aligned_cols=187 Identities=18% Similarity=0.174 Sum_probs=122.3
Q ss_pred HHHHHHHHHcCCCCCCcccCCChhhhhhhhc---------cCCc-eeeeccc-ccccccccceEEEEeeeecceEEecCC
Q 021116 57 EDKKELLKRYGLDPDEFLSEPSPKTRRRKEG---------RGSK-LVVSDEK-SQEERTTHRLLQVLGGKARRKKLLSPK 125 (317)
Q Consensus 57 ~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~---------~~g~-~~~~~~~-~~~p~~~~~il~ii~G~~~G~~l~~p~ 125 (317)
+.....|..+|++.+...-...-.+++.|+. .+|. ....+.. .++|......+.+..|. ..
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dW~~~w~~~~~p~~~g~~~~i~p~w~~~~~~~~~~~i~ldpg~--------aF 138 (288)
T TIGR00406 67 NSVIPLLEAFCLDLGRNHKIEFDEFSKDWERAWKDNFHPVQFGKRFWICPSWRDVPSDEDALIIMLDPGL--------AF 138 (288)
T ss_pred HHHHHHHHhcccCCCcceeEEeecchhhHHHHHHHhCCCEEEcCeEEEECCCcCCCCCCCcEEEEECCCC--------cc
Confidence 4456777788887753211111112466662 3332 4444442 23332233334444443 34
Q ss_pred CCCCCCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCC
Q 021116 126 GMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFL 205 (317)
Q Consensus 126 ~~~~rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~ 205 (317)
+..++||+....+.+-... .++.+|||+|||+|.+++.+++.|+.+|+++|+|+.++ +.|++|++.+++.
T Consensus 139 gtG~h~tt~l~l~~l~~~~---------~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al-~~a~~n~~~n~~~ 208 (288)
T TIGR00406 139 GTGTHPTTSLCLEWLEDLD---------LKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAV-ESARKNAELNQVS 208 (288)
T ss_pred cCCCCHHHHHHHHHHHhhc---------CCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHH-HHHHHHHHHcCCC
Confidence 4467888887665543321 35789999999999999998888888999999999999 9999999999998
Q ss_pred CceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCCCCC
Q 021116 206 DVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTD 274 (317)
Q Consensus 206 ~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~~~ 274 (317)
+++.+..+|.... ..++||+|++|... ..+..++..+. ++|+|||+++++......
T Consensus 209 ~~~~~~~~~~~~~---------~~~~fDlVvan~~~--~~l~~ll~~~~--~~LkpgG~li~sgi~~~~ 264 (288)
T TIGR00406 209 DRLQVKLIYLEQP---------IEGKADVIVANILA--EVIKELYPQFS--RLVKPGGWLILSGILETQ 264 (288)
T ss_pred cceEEEecccccc---------cCCCceEEEEecCH--HHHHHHHHHHH--HHcCCCcEEEEEeCcHhH
Confidence 7777777763321 13689999998632 23344555544 589999999997654443
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=7.6e-15 Score=142.30 Aligned_cols=213 Identities=12% Similarity=0.117 Sum_probs=132.2
Q ss_pred ccceEEeeccCCCCCChHHHHHHHHHcCCCCCCc-ccCCChhhhhhhh--ccCCc-----------eeeecccccccccc
Q 021116 40 RYPLIVFSYKSGTGLTSEDKKELLKRYGLDPDEF-LSEPSPKTRRRKE--GRGSK-----------LVVSDEKSQEERTT 105 (317)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~-~~~~~~~~~~~~~--~~~g~-----------~~~~~~~~~~p~~~ 105 (317)
...+|.-+-|..-+.+.-.+.+.+..-.-+-.++ +|+...+-+.... ...+. +..+..+.. |.
T Consensus 76 ~~d~~~~~~pk~k~~~~~~l~~~~~~l~~g~~i~~~G~~~~g~~s~~k~~~~~~~~~~~~~ar~~~l~~~~~~~~-~~-- 152 (342)
T PRK09489 76 DCDTLIYYWPKNKQEAQFQLMNLLSLLPVGTDIFVVGENRSGVRSAEKMLADYAPLNKIDSARRCGLYHGRLEKQ-PV-- 152 (342)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHhCCCCCEEEEEEeccccHHHHHHHHHHhcCccccccceeEEEEEEecccc-CC--
Confidence 4566777777777776666666555544444333 6766653322111 01111 111111111 10
Q ss_pred cceEE-EEeeeecceEEecCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCC-CEEEE
Q 021116 106 HRLLQ-VLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGC-SEVHF 183 (317)
Q Consensus 106 ~~il~-ii~G~~~G~~l~~p~~~~~rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga-~~V~a 183 (317)
..... ...-.+.+..+...++.+.++..+.-.+.+++.+.. ....+|||+|||+|.+++.+++++. .+|++
T Consensus 153 ~~~~~~~~~y~~~~l~i~~~pgvFs~~~lD~gt~lLl~~l~~-------~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~ 225 (342)
T PRK09489 153 FDADKFWKEYQVDGLTVKTLPGVFSRDGLDVGSQLLLSTLTP-------HTKGKVLDVGCGAGVLSAVLARHSPKIRLTL 225 (342)
T ss_pred CcccccceeeecCCEEEEeCCCCCCCCCCCHHHHHHHHhccc-------cCCCeEEEeccCcCHHHHHHHHhCCCCEEEE
Confidence 00000 000012245667777777666665555556565543 2345899999999999998887653 57999
Q ss_pred EeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCc---cH---HHHHHHHHHcC
Q 021116 184 VEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAV---DY---EVLMAQISKSA 257 (317)
Q Consensus 184 VDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~---~~---~~~l~~L~~~~ 257 (317)
+|+|+.++ +.+++|++.+++. .+++.+|+.... .++||+|++||||+.+ .+ +.++... .+
T Consensus 226 vDis~~Al-~~A~~nl~~n~l~--~~~~~~D~~~~~---------~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a--~~ 291 (342)
T PRK09489 226 SDVSAAAL-ESSRATLAANGLE--GEVFASNVFSDI---------KGRFDMIISNPPFHDGIQTSLDAAQTLIRGA--VR 291 (342)
T ss_pred EECCHHHH-HHHHHHHHHcCCC--CEEEEccccccc---------CCCccEEEECCCccCCccccHHHHHHHHHHH--HH
Confidence 99999999 9999999999885 467888876532 3689999999999753 22 3333333 36
Q ss_pred CcCCCeEEEEEeCCCCCcc
Q 021116 258 LVGKDSFIVVEYPLRTDML 276 (317)
Q Consensus 258 lLkpgG~ivv~~~~~~~l~ 276 (317)
.|+|||.+++..+....++
T Consensus 292 ~LkpgG~L~iVan~~l~y~ 310 (342)
T PRK09489 292 HLNSGGELRIVANAFLPYP 310 (342)
T ss_pred hcCcCCEEEEEEeCCCChH
Confidence 8999999999888655443
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.5e-15 Score=133.20 Aligned_cols=78 Identities=31% Similarity=0.393 Sum_probs=70.9
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
+++..|+|+|||||.+++.++..|+.+|++||+|++++ +.+++|+..++ ++++++.+|+.++ ...+|
T Consensus 44 l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~-ei~r~N~~~l~--g~v~f~~~dv~~~----------~~~~d 110 (198)
T COG2263 44 LEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEAL-EIARANAEELL--GDVEFVVADVSDF----------RGKFD 110 (198)
T ss_pred cCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHH-HHHHHHHHhhC--CceEEEEcchhhc----------CCccc
Confidence 67889999999999999999999999999999999999 99999999843 4599999999887 37899
Q ss_pred EEEECCCCCCc
Q 021116 234 YMSVTPPYTAV 244 (317)
Q Consensus 234 lV~~dPPy~~~ 244 (317)
.|++||||+..
T Consensus 111 tvimNPPFG~~ 121 (198)
T COG2263 111 TVIMNPPFGSQ 121 (198)
T ss_pred eEEECCCCccc
Confidence 99999999853
|
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.61 E-value=9.1e-15 Score=145.56 Aligned_cols=139 Identities=21% Similarity=0.184 Sum_probs=108.1
Q ss_pred ceEEecCCCCCCCCCh---HHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHH
Q 021116 118 RKKLLSPKGMDVRPMM---EVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNV 194 (317)
Q Consensus 118 G~~l~~p~~~~~rpt~---~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ 194 (317)
+..+..+...++.+.. +.+...+.++++. .+++++||+|||.|++++.++.+ ..+|++||+++.++ +.
T Consensus 260 ~~~~~~~~~sF~Q~N~~~~ekl~~~a~~~~~~-------~~~~~vlDlYCGvG~f~l~lA~~-~~~V~gvEi~~~aV-~~ 330 (432)
T COG2265 260 GVSFQISPRSFFQVNPAVAEKLYETALEWLEL-------AGGERVLDLYCGVGTFGLPLAKR-VKKVHGVEISPEAV-EA 330 (432)
T ss_pred ceEEEeCCCCceecCHHHHHHHHHHHHHHHhh-------cCCCEEEEeccCCChhhhhhccc-CCEEEEEecCHHHH-HH
Confidence 3455555555655544 3344445555554 35789999999999999977654 56899999999999 99
Q ss_pred HHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCCCCC
Q 021116 195 LIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTD 274 (317)
Q Consensus 195 ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~~~ 274 (317)
|++|++.||+.| +++..+|++++..... ....+|.|++|||+. +.-+++++.+. .++|..++|++|+..+-
T Consensus 331 A~~NA~~n~i~N-~~f~~~~ae~~~~~~~----~~~~~d~VvvDPPR~-G~~~~~lk~l~---~~~p~~IvYVSCNP~Tl 401 (432)
T COG2265 331 AQENAAANGIDN-VEFIAGDAEEFTPAWW----EGYKPDVVVVDPPRA-GADREVLKQLA---KLKPKRIVYVSCNPATL 401 (432)
T ss_pred HHHHHHHcCCCc-EEEEeCCHHHHhhhcc----ccCCCCEEEECCCCC-CCCHHHHHHHH---hcCCCcEEEEeCCHHHH
Confidence 999999999987 9999999999986541 235789999999975 45567888886 48999999999997653
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.61 E-value=3e-15 Score=120.20 Aligned_cols=104 Identities=21% Similarity=0.257 Sum_probs=81.0
Q ss_pred CCCeEEEECCCcchHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 155 RPGRWLDLYSGTGSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas-~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
++.+|||+|||+|.+++++++ ....+|++||+|+.++ +.|++|+...+..++++++++|+ ..... ..+.||
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~-~~a~~~~~~~~~~~~i~~~~~d~-~~~~~------~~~~~D 72 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEML-EIARERAAEEGLSDRITFVQGDA-EFDPD------FLEPFD 72 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHH-HHHHHHHHHTTTTTTEEEEESCC-HGGTT------TSSCEE
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHH-HHHHHHHHhcCCCCCeEEEECcc-ccCcc------cCCCCC
Confidence 368999999999999999888 2445799999999999 99999997788888999999999 32211 236799
Q ss_pred EEEECCCCCC---c---cHHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 234 YMSVTPPYTA---V---DYEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 234 lV~~dPPy~~---~---~~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
+|+++. +.. . ...+.++.+. ++|+|||+++++.
T Consensus 73 ~v~~~~-~~~~~~~~~~~~~~~l~~~~--~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 73 LVICSG-FTLHFLLPLDERRRVLERIR--RLLKPGGRLVINT 111 (112)
T ss_dssp EEEECS-GSGGGCCHHHHHHHHHHHHH--HHEEEEEEEEEEE
T ss_pred EEEECC-CccccccchhHHHHHHHHHH--HhcCCCcEEEEEE
Confidence 999986 311 1 1234455554 4899999999875
|
... |
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.8e-14 Score=131.09 Aligned_cols=135 Identities=22% Similarity=0.293 Sum_probs=96.6
Q ss_pred ceEEecCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHH
Q 021116 118 RKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIP 197 (317)
Q Consensus 118 G~~l~~p~~~~~rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~ 197 (317)
|..+.++++.+ +|..+. +.+.+.+.... ..++.+|||+|||+|.+++.++..++.+|+++|+|+.++ +.+++
T Consensus 6 ~~~~~~~~g~~-~p~~ds--~~l~~~l~~~~----~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l-~~a~~ 77 (223)
T PRK14967 6 PDALLRAPGVY-RPQEDT--QLLADALAAEG----LGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAV-RSARL 77 (223)
T ss_pred CceeecCCCCc-CCCCcH--HHHHHHHHhcc----cCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHH-HHHHH
Confidence 44555666544 665442 22333343211 135689999999999999988887766899999999999 99999
Q ss_pred hHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCcc----------------------HHHHHHHHHH
Q 021116 198 NLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVD----------------------YEVLMAQISK 255 (317)
Q Consensus 198 N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~----------------------~~~~l~~L~~ 255 (317)
|++.+++ +++++++|+.+.+ ..++||+|++||||.... ++.+++.+
T Consensus 78 n~~~~~~--~~~~~~~d~~~~~--------~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a-- 145 (223)
T PRK14967 78 NALLAGV--DVDVRRGDWARAV--------EFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAA-- 145 (223)
T ss_pred HHHHhCC--eeEEEECchhhhc--------cCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHH--
Confidence 9999887 3789999987643 136899999999987421 12223322
Q ss_pred cCCcCCCeEEEEEeCCC
Q 021116 256 SALVGKDSFIVVEYPLR 272 (317)
Q Consensus 256 ~~lLkpgG~ivv~~~~~ 272 (317)
.++|++||++++..+..
T Consensus 146 ~~~Lk~gG~l~~~~~~~ 162 (223)
T PRK14967 146 PALLAPGGSLLLVQSEL 162 (223)
T ss_pred HHhcCCCcEEEEEEecc
Confidence 36899999999876654
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.4e-15 Score=141.26 Aligned_cols=182 Identities=19% Similarity=0.186 Sum_probs=123.2
Q ss_pred hhhhhhccCCceee--e-cccccccccccceEEEEeeeec-ceEEecCCCC-----------CCC--CChHHHHHHHHHH
Q 021116 81 TRRRKEGRGSKLVV--S-DEKSQEERTTHRLLQVLGGKAR-RKKLLSPKGM-----------DVR--PMMEVVKGAAFDI 143 (317)
Q Consensus 81 ~~~~~~~~~g~~~~--~-~~~~~~p~~~~~il~ii~G~~~-G~~l~~p~~~-----------~~r--pt~~~v~~alf~~ 143 (317)
+...+|+.+|..+. + ..++.+|.....+.. ..+.+. |..+....+. ... +....++.++.++
T Consensus 99 ~~~~~~~~ig~~i~~~g~~v~l~~Pd~~i~v~~-~~~~~~~g~~~~~~~~~~~~~~~~~~R~~~~~~~l~~~la~~~~~l 177 (329)
T TIGR01177 99 DKARLERKIGAILKKKGFKVSLRRPDIVVRVVI-TEDIFYLGRVLEERDKEQFIERKPDRRPFFKPGSMDPKLARAMVNL 177 (329)
T ss_pred CHHHHHHHHHHHHHhcCCccccCCCCeEEEEEE-ECCeEEEEEEeeecchhhhhhcCcccCCccCCCCCCHHHHHHHHHH
Confidence 34555554544332 2 457788877765542 233332 4433211100 112 2345677777776
Q ss_pred HhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHh
Q 021116 144 LQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAE 223 (317)
Q Consensus 144 L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~ 223 (317)
+.. .++.+|||+|||||.+.++++..|+ +|+++|+|+.++ +.++.|++.+|+.+ ++++++|+.+..
T Consensus 178 ~~~-------~~g~~vLDp~cGtG~~lieaa~~~~-~v~g~Di~~~~~-~~a~~nl~~~g~~~-i~~~~~D~~~l~---- 243 (329)
T TIGR01177 178 ARV-------TEGDRVLDPFCGTGGFLIEAGLMGA-KVIGCDIDWKMV-AGARINLEHYGIED-FFVKRGDATKLP---- 243 (329)
T ss_pred hCC-------CCcCEEEECCCCCCHHHHHHHHhCC-eEEEEcCCHHHH-HHHHHHHHHhCCCC-CeEEecchhcCC----
Confidence 643 3678999999999999999888775 699999999999 99999999999976 889999987642
Q ss_pred hhcCCCCCccEEEECCCCCCcc----------HHHHHHHHHHcCCcCCCeEEEEEeCCCCCcccc--CCCe
Q 021116 224 QFVGKDGPFDYMSVTPPYTAVD----------YEVLMAQISKSALVGKDSFIVVEYPLRTDMLDT--CGCL 282 (317)
Q Consensus 224 ~~~~~~~~fDlV~~dPPy~~~~----------~~~~l~~L~~~~lLkpgG~ivv~~~~~~~l~~~--~~~~ 282 (317)
...+.||+|++||||+... +.++++.+. ++|+|||++++..+....+... ..+|
T Consensus 244 ---~~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~--r~Lk~gG~lv~~~~~~~~~~~~~~~~g~ 309 (329)
T TIGR01177 244 ---LSSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFH--EVLKSEGWIVYAVPTRIDLESLAEDAFR 309 (329)
T ss_pred ---cccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHH--HHccCCcEEEEEEcCCCCHHHHHhhcCc
Confidence 1246899999999997421 344454443 5899999999888766554322 3456
|
This family is found exclusively in the Archaea. |
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.61 E-value=9.4e-15 Score=129.58 Aligned_cols=126 Identities=18% Similarity=0.170 Sum_probs=100.6
Q ss_pred CCCCCh--HHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHhHHHhCC
Q 021116 128 DVRPMM--EVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGF 204 (317)
Q Consensus 128 ~~rpt~--~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~G-a~~V~aVDin~~al~~~ar~N~~~~gl 204 (317)
.+||++ +.+.+.+++.+.... ...+.+|||+|||+|.+++.++..+ ..+|+++|.|+.++ +.+++|++.+++
T Consensus 17 l~~~~~~~~~~~~~~~d~i~~~~----~~~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~-~~a~~~~~~~~~ 91 (181)
T TIGR00138 17 LTSLKTPEEIWERHILDSLKLLE----YLDGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKV-AFLREVKAELGL 91 (181)
T ss_pred ccccCCHHHHHHHHHHHHHHHHH----hcCCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHH-HHHHHHHHHhCC
Confidence 468888 889999998864321 1458899999999999999876554 45799999999998 999999999998
Q ss_pred CCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCCC
Q 021116 205 LDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 205 ~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~ 272 (317)
.+ ++++++|+.++. ..++||+|+++. ...+++.++.+. ++|+|||++++.+...
T Consensus 92 ~~-i~~i~~d~~~~~--------~~~~fD~I~s~~---~~~~~~~~~~~~--~~LkpgG~lvi~~~~~ 145 (181)
T TIGR00138 92 NN-VEIVNGRAEDFQ--------HEEQFDVITSRA---LASLNVLLELTL--NLLKVGGYFLAYKGKK 145 (181)
T ss_pred CC-eEEEecchhhcc--------ccCCccEEEehh---hhCHHHHHHHHH--HhcCCCCEEEEEcCCC
Confidence 54 999999998752 136899999986 235666666654 5899999999987644
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.6e-15 Score=141.92 Aligned_cols=139 Identities=24% Similarity=0.255 Sum_probs=106.4
Q ss_pred CCCC--ChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCC
Q 021116 128 DVRP--MMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFL 205 (317)
Q Consensus 128 ~~rp--t~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~ 205 (317)
+.+| +..++++++.|.... .+|+.|||+|||||++.+||.-.|+ +|+|+|++..++ +.|+.|+++.|++
T Consensus 175 f~~p~s~~P~lAR~mVNLa~v-------~~G~~vlDPFcGTGgiLiEagl~G~-~viG~Did~~mv-~gak~Nl~~y~i~ 245 (347)
T COG1041 175 FFRPGSMDPRLARAMVNLARV-------KRGELVLDPFCGTGGILIEAGLMGA-RVIGSDIDERMV-RGAKINLEYYGIE 245 (347)
T ss_pred ccCcCCcCHHHHHHHHHHhcc-------ccCCEeecCcCCccHHHHhhhhcCc-eEeecchHHHHH-hhhhhhhhhhCcC
Confidence 3455 347899999999876 5789999999999999999999997 699999999999 9999999999987
Q ss_pred CceEEEEe-cHHHHHHHHhhhcCCCCCccEEEECCCCCCcc----------HHHHHHHHHHcCCcCCCeEEEEEeCCCCC
Q 021116 206 DVSSIHTV-RVETFLERAEQFVGKDGPFDYMSVTPPYTAVD----------YEVLMAQISKSALVGKDSFIVVEYPLRTD 274 (317)
Q Consensus 206 ~~v~ii~g-D~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~----------~~~~l~~L~~~~lLkpgG~ivv~~~~~~~ 274 (317)
+ ..++.. |+.+.. ..+.++|.|+.||||+... |.+.++.+. ..|++||++++..+....
T Consensus 246 ~-~~~~~~~Da~~lp-------l~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~--evLk~gG~~vf~~p~~~~ 315 (347)
T COG1041 246 D-YPVLKVLDATNLP-------LRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESAS--EVLKPGGRIVFAAPRDPR 315 (347)
T ss_pred c-eeEEEecccccCC-------CCCCccceEEecCCCCcccccccccHHHHHHHHHHHHH--HHhhcCcEEEEecCCcch
Confidence 6 566666 887642 2345799999999998531 444455544 599999999998873221
Q ss_pred ccccCCCeEEE
Q 021116 275 MLDTCGCLVKI 285 (317)
Q Consensus 275 l~~~~~~~~~~ 285 (317)
-.....+|.++
T Consensus 316 ~~~~~~~f~v~ 326 (347)
T COG1041 316 HELEELGFKVL 326 (347)
T ss_pred hhHhhcCceEE
Confidence 11123556654
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.2e-14 Score=141.42 Aligned_cols=140 Identities=16% Similarity=0.110 Sum_probs=103.6
Q ss_pred cceEEecCCCCCCCC---ChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHH
Q 021116 117 RRKKLLSPKGMDVRP---MMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSN 193 (317)
Q Consensus 117 ~G~~l~~p~~~~~rp---t~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~ 193 (317)
.|.++....+.+... ..+.+.+.+..++.. .++.+|||+|||+|.+++.+++. +.+|+++|+|+.++ +
T Consensus 258 ~~~~~~~~~~~F~Q~N~~~~~~l~~~~~~~l~~-------~~~~~vLDl~cG~G~~sl~la~~-~~~V~~vE~~~~av-~ 328 (431)
T TIGR00479 258 GDLSFSLSARDFFQVNSGQNEKLVDRALEALEL-------QGEELVVDAYCGVGTFTLPLAKQ-AKSVVGIEVVPESV-E 328 (431)
T ss_pred CCEEEEECCCceeecCHHHHHHHHHHHHHHhcc-------CCCCEEEEcCCCcCHHHHHHHHh-CCEEEEEEcCHHHH-H
Confidence 356666655554333 233344444444432 34689999999999999987765 45899999999999 9
Q ss_pred HHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCCCC
Q 021116 194 VLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRT 273 (317)
Q Consensus 194 ~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~~ 273 (317)
.|++|++.+++. +++++.+|+.+++.... .....||+|++|||+. +...++++.+. .+++++++|++|+..+
T Consensus 329 ~a~~n~~~~~~~-nv~~~~~d~~~~l~~~~---~~~~~~D~vi~dPPr~-G~~~~~l~~l~---~l~~~~ivyvsc~p~t 400 (431)
T TIGR00479 329 KAQQNAELNGIA-NVEFLAGTLETVLPKQP---WAGQIPDVLLLDPPRK-GCAAEVLRTII---ELKPERIVYVSCNPAT 400 (431)
T ss_pred HHHHHHHHhCCC-ceEEEeCCHHHHHHHHH---hcCCCCCEEEECcCCC-CCCHHHHHHHH---hcCCCEEEEEcCCHHH
Confidence 999999999985 59999999988764321 1235799999999985 44567777765 3789999999998654
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.8e-14 Score=124.45 Aligned_cols=123 Identities=16% Similarity=0.241 Sum_probs=92.7
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccE
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDl 234 (317)
++.+|||+|||+|.+++.++.++. +|+++|+|+.++ +.+++|++.++. +++++.+|+.+.. .++||+
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~-~~a~~~~~~~~~--~~~~~~~d~~~~~---------~~~fD~ 85 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAV-KELRENAKLNNV--GLDVVMTDLFKGV---------RGKFDV 85 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHH-HHHHHHHHHcCC--ceEEEEccccccc---------CCcccE
Confidence 567899999999999999888876 899999999999 999999998886 3788999976542 258999
Q ss_pred EEECCCCCCcc----------------------HHHHHHHHHHcCCcCCCeEEEEEeCCCCCccc-----cCCCeEEEEE
Q 021116 235 MSVTPPYTAVD----------------------YEVLMAQISKSALVGKDSFIVVEYPLRTDMLD-----TCGCLVKIKD 287 (317)
Q Consensus 235 V~~dPPy~~~~----------------------~~~~l~~L~~~~lLkpgG~ivv~~~~~~~l~~-----~~~~~~~~~~ 287 (317)
|++||||.... +++.++.+ .++|+|||.+++.........+ ...+|.....
T Consensus 86 Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~gf~~~~~ 163 (179)
T TIGR00537 86 ILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDEL--PEILKEGGRVQLIQSSLNGEPDTFDKLDERGFRYEIV 163 (179)
T ss_pred EEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhH--HHhhCCCCEEEEEEeccCChHHHHHHHHhCCCeEEEE
Confidence 99999995321 12233333 3689999999887765542211 1356777666
Q ss_pred eecCc
Q 021116 288 RRFGR 292 (317)
Q Consensus 288 r~yG~ 292 (317)
+.||-
T Consensus 164 ~~~~~ 168 (179)
T TIGR00537 164 AERGL 168 (179)
T ss_pred EEeec
Confidence 66663
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.4e-13 Score=127.54 Aligned_cols=139 Identities=17% Similarity=0.119 Sum_probs=97.5
Q ss_pred CCCCCCCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCC
Q 021116 125 KGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGF 204 (317)
Q Consensus 125 ~~~~~rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl 204 (317)
.+..+++|+....+.+...+ .++.+|||+|||+|.+++.+++.|+.+|+++|+|+.++ +.|++|++.+++
T Consensus 98 fgtg~h~tt~~~l~~l~~~~---------~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l-~~A~~n~~~~~~ 167 (250)
T PRK00517 98 FGTGTHPTTRLCLEALEKLV---------LPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAV-EAARENAELNGV 167 (250)
T ss_pred cCCCCCHHHHHHHHHHHhhc---------CCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHH-HHHHHHHHHcCC
Confidence 44466788776665554332 35789999999999999988888887899999999999 999999999988
Q ss_pred CCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCCCCCccc-----cC
Q 021116 205 LDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLD-----TC 279 (317)
Q Consensus 205 ~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~~~l~~-----~~ 279 (317)
.+++.+..+| .+||+|++|... ..+..++..+. ++|+|||+++++....+.... ..
T Consensus 168 ~~~~~~~~~~---------------~~fD~Vvani~~--~~~~~l~~~~~--~~LkpgG~lilsgi~~~~~~~v~~~l~~ 228 (250)
T PRK00517 168 ELNVYLPQGD---------------LKADVIVANILA--NPLLELAPDLA--RLLKPGGRLILSGILEEQADEVLEAYEE 228 (250)
T ss_pred CceEEEccCC---------------CCcCEEEEcCcH--HHHHHHHHHHH--HhcCCCcEEEEEECcHhhHHHHHHHHHH
Confidence 6555443332 269999998521 23344455444 589999999998654433221 13
Q ss_pred CCeEEEEEeecCc
Q 021116 280 GCLVKIKDRRFGR 292 (317)
Q Consensus 280 ~~~~~~~~r~yG~ 292 (317)
.+|.+......|+
T Consensus 229 ~Gf~~~~~~~~~~ 241 (250)
T PRK00517 229 AGFTLDEVLERGE 241 (250)
T ss_pred CCCEEEEEEEeCC
Confidence 4566665544443
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.9e-14 Score=125.94 Aligned_cols=124 Identities=23% Similarity=0.221 Sum_probs=96.6
Q ss_pred CChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCce
Q 021116 131 PMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVS 208 (317)
Q Consensus 131 pt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~-G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~v 208 (317)
.|...++...+..+.. .++.+|||+|||+|.+++++++. + ..+|+++|+++.++ +.+++|++.+++.+++
T Consensus 23 ~t~~~~r~~~l~~l~~-------~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~-~~a~~n~~~~g~~~~v 94 (198)
T PRK00377 23 MTKEEIRALALSKLRL-------RKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAI-NLTRRNAEKFGVLNNI 94 (198)
T ss_pred CCHHHHHHHHHHHcCC-------CCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHHHHhCCCCCe
Confidence 4667777666665543 46889999999999999988763 3 35899999999998 9999999999976679
Q ss_pred EEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCCC
Q 021116 209 SIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 209 ~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~ 272 (317)
+++.+|+.+++... .+.||+||++.. ...+...++.+. +.|+|||+++++....
T Consensus 95 ~~~~~d~~~~l~~~------~~~~D~V~~~~~--~~~~~~~l~~~~--~~LkpgG~lv~~~~~~ 148 (198)
T PRK00377 95 VLIKGEAPEILFTI------NEKFDRIFIGGG--SEKLKEIISASW--EIIKKGGRIVIDAILL 148 (198)
T ss_pred EEEEechhhhHhhc------CCCCCEEEECCC--cccHHHHHHHHH--HHcCCCcEEEEEeecH
Confidence 99999998765432 367999999752 235666776655 4899999999865543
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.3e-14 Score=125.87 Aligned_cols=122 Identities=20% Similarity=0.285 Sum_probs=85.1
Q ss_pred CCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCC--C--------EEEEEeCCHHHHHHHHHHhH
Q 021116 130 RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGC--S--------EVHFVEMDPWVVSNVLIPNL 199 (317)
Q Consensus 130 rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga--~--------~V~aVDin~~al~~~ar~N~ 199 (317)
-|+...++.++.+.... .++..|||+|||||++.||++..+. . +++++|+|++++ +.|++|+
T Consensus 10 a~L~~~lA~~ll~la~~-------~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v-~~a~~N~ 81 (179)
T PF01170_consen 10 APLRPTLAAALLNLAGW-------RPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAV-RGARENL 81 (179)
T ss_dssp TSS-HHHHHHHHHHTT---------TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHH-HHHHHHH
T ss_pred CCCCHHHHHHHHHHhCC-------CCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHH-HHHHHHH
Confidence 45667788888877654 3678999999999999999876543 2 278999999999 9999999
Q ss_pred HHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCc---------cHHHHHHHHHHcCCcCCCeEEEEE
Q 021116 200 EWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAV---------DYEVLMAQISKSALVGKDSFIVVE 268 (317)
Q Consensus 200 ~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~---------~~~~~l~~L~~~~lLkpgG~ivv~ 268 (317)
+..|+.+.+.+.+.|+.++. ...+.+|.|++||||+.. .|..+++.+. +++++...+++.
T Consensus 82 ~~ag~~~~i~~~~~D~~~l~-------~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~--~~l~~~~v~l~~ 150 (179)
T PF01170_consen 82 KAAGVEDYIDFIQWDARELP-------LPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELK--RVLKPRAVFLTT 150 (179)
T ss_dssp HHTT-CGGEEEEE--GGGGG-------GTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHH--CHSTTCEEEEEE
T ss_pred HhcccCCceEEEecchhhcc-------cccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHH--HHCCCCEEEEEE
Confidence 99999988999999988764 124689999999999863 1334444443 578884444443
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.57 E-value=8.9e-14 Score=127.04 Aligned_cols=137 Identities=23% Similarity=0.310 Sum_probs=102.0
Q ss_pred ecceEEecCCCC-CCCCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHc-CCCEEEEEeCCHHHHHH
Q 021116 116 ARRKKLLSPKGM-DVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSN 193 (317)
Q Consensus 116 ~~G~~l~~p~~~-~~rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~-Ga~~V~aVDin~~al~~ 193 (317)
+.+..+....+. ..+|.+..+.+.+.+.+.. .+.+|||+|||+|.+++.++.. ...+++++|+++.++ +
T Consensus 55 ~~~~~~~~~~~~~~p~~~~~~l~~~~l~~~~~--------~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~-~ 125 (251)
T TIGR03534 55 FYGLDFKVSPGVLIPRPDTEELVEAALERLKK--------GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEAL-A 125 (251)
T ss_pred EeceEEEECCCcccCCCChHHHHHHHHHhccc--------CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHH-H
Confidence 445555554443 3577777777777666532 3568999999999999988775 334899999999999 9
Q ss_pred HHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCcc---------------------------H
Q 021116 194 VLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVD---------------------------Y 246 (317)
Q Consensus 194 ~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~---------------------------~ 246 (317)
.+++|++.+++. +++++++|+.+.+ ..++||+|++||||.... +
T Consensus 126 ~a~~~~~~~~~~-~~~~~~~d~~~~~--------~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 196 (251)
T TIGR03534 126 VARKNAARLGLD-NVTFLQSDWFEPL--------PGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFY 196 (251)
T ss_pred HHHHHHHHcCCC-eEEEEECchhccC--------cCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHH
Confidence 999999999885 5899999987643 246899999999997421 0
Q ss_pred HHHHHHHHHcCCcCCCeEEEEEeCCC
Q 021116 247 EVLMAQISKSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 247 ~~~l~~L~~~~lLkpgG~ivv~~~~~ 272 (317)
..+++.+ .++|++||+++++....
T Consensus 197 ~~~i~~~--~~~L~~gG~~~~~~~~~ 220 (251)
T TIGR03534 197 RRIIAQA--PRLLKPGGWLLLEIGYD 220 (251)
T ss_pred HHHHHHH--HHhcccCCEEEEEECcc
Confidence 1222222 36899999999988643
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.5e-14 Score=130.09 Aligned_cols=139 Identities=22% Similarity=0.278 Sum_probs=103.5
Q ss_pred eecceEEecCCCC-CCCCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcC-CCEEEEEeCCHHHHH
Q 021116 115 KARRKKLLSPKGM-DVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVS 192 (317)
Q Consensus 115 ~~~G~~l~~p~~~-~~rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~G-a~~V~aVDin~~al~ 192 (317)
.|.|..+.+..+. ..||.++.+.+.+++.+.. .++.+|||+|||+|.+++.++... ..+|+++|+++.++
T Consensus 74 ~f~~~~~~~~~~~lipr~~te~l~~~~~~~~~~-------~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l- 145 (275)
T PRK09328 74 EFWGLDFKVSPGVLIPRPETEELVEWALEALLL-------KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEAL- 145 (275)
T ss_pred eEcCcEEEECCCceeCCCCcHHHHHHHHHhccc-------cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHH-
Confidence 4667777665554 4699999888888755433 356799999999999999887754 45899999999999
Q ss_pred HHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCcc---------------------------
Q 021116 193 NVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVD--------------------------- 245 (317)
Q Consensus 193 ~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~--------------------------- 245 (317)
+.|++|++ ++..++++++.+|+.+.. ..++||+|++||||....
T Consensus 146 ~~a~~n~~-~~~~~~i~~~~~d~~~~~--------~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~ 216 (275)
T PRK09328 146 AVARRNAK-HGLGARVEFLQGDWFEPL--------PGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDF 216 (275)
T ss_pred HHHHHHHH-hCCCCcEEEEEccccCcC--------CCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHH
Confidence 99999998 444456999999985432 136899999999996421
Q ss_pred HHHHHHHHHHcCCcCCCeEEEEEeCCC
Q 021116 246 YEVLMAQISKSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 246 ~~~~l~~L~~~~lLkpgG~ivv~~~~~ 272 (317)
+..+++.+ .++|++||++++++...
T Consensus 217 ~~~~~~~~--~~~Lk~gG~l~~e~g~~ 241 (275)
T PRK09328 217 YRRIIEQA--PRYLKPGGWLLLEIGYD 241 (275)
T ss_pred HHHHHHHH--HHhcccCCEEEEEECch
Confidence 11222222 36899999999988643
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.1e-14 Score=126.04 Aligned_cols=128 Identities=15% Similarity=0.081 Sum_probs=99.3
Q ss_pred CCCCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHhHHHhCCCC
Q 021116 128 DVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLD 206 (317)
Q Consensus 128 ~~rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~-Ga~~V~aVDin~~al~~~ar~N~~~~gl~~ 206 (317)
..++|...++..+++.+.. .++.+|||+|||+|.++++++.. ...+|+++|+|+.++ +.+++|++.+++.
T Consensus 20 ~~p~t~~~v~~~l~~~l~~-------~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~-~~a~~n~~~~~~~- 90 (196)
T PRK07402 20 GIPLTKREVRLLLISQLRL-------EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVV-NLIRRNCDRFGVK- 90 (196)
T ss_pred CCCCCHHHHHHHHHHhcCC-------CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHH-HHHHHHHHHhCCC-
Confidence 3457888888888888754 35789999999999999988754 335899999999999 9999999999985
Q ss_pred ceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCCCCCc
Q 021116 207 VSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDM 275 (317)
Q Consensus 207 ~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~~~l 275 (317)
+++++.+|+.+.+... ...+|.++++.. ...+.+++.+. ++|+|||++++.....+++
T Consensus 91 ~v~~~~~d~~~~~~~~------~~~~d~v~~~~~---~~~~~~l~~~~--~~LkpgG~li~~~~~~~~~ 148 (196)
T PRK07402 91 NVEVIEGSAPECLAQL------APAPDRVCIEGG---RPIKEILQAVW--QYLKPGGRLVATASSLEGL 148 (196)
T ss_pred CeEEEECchHHHHhhC------CCCCCEEEEECC---cCHHHHHHHHH--HhcCCCeEEEEEeecHHHH
Confidence 5999999997654332 245788888742 24566777665 4799999999988765543
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.9e-14 Score=124.01 Aligned_cols=118 Identities=21% Similarity=0.170 Sum_probs=93.8
Q ss_pred CChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceE
Q 021116 131 PMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSS 209 (317)
Q Consensus 131 pt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ 209 (317)
.+.+.++..+++.+.. .++.+|||+|||+|.+++.+++++ ..+|+++|+++.++ +.+++|++.+++. +++
T Consensus 14 ~~~~~~r~~~~~~l~~-------~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~-~~a~~n~~~~~~~-~i~ 84 (187)
T PRK08287 14 MTKEEVRALALSKLEL-------HRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDAL-RLIKENRQRFGCG-NID 84 (187)
T ss_pred CchHHHHHHHHHhcCC-------CCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHH-HHHHHHHHHhCCC-CeE
Confidence 5777888888888754 367899999999999999988764 35899999999998 9999999999885 589
Q ss_pred EEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 210 IHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 210 ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
++++|+...+ .++||+|+++... ..+.++++.+. ++|+|||++++...
T Consensus 85 ~~~~d~~~~~---------~~~~D~v~~~~~~--~~~~~~l~~~~--~~Lk~gG~lv~~~~ 132 (187)
T PRK08287 85 IIPGEAPIEL---------PGKADAIFIGGSG--GNLTAIIDWSL--AHLHPGGRLVLTFI 132 (187)
T ss_pred EEecCchhhc---------CcCCCEEEECCCc--cCHHHHHHHHH--HhcCCCeEEEEEEe
Confidence 9999974321 2579999998532 34566666554 58999999998764
|
|
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.1e-13 Score=128.78 Aligned_cols=148 Identities=18% Similarity=0.227 Sum_probs=111.0
Q ss_pred Eeee--ecceEEecCCCC-CCCCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHH-cCCCEEEEEeCC
Q 021116 112 LGGK--ARRKKLLSPKGM-DVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAIS-RGCSEVHFVEMD 187 (317)
Q Consensus 112 i~G~--~~G~~l~~p~~~-~~rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas-~Ga~~V~aVDin 187 (317)
|-|. |.+..+...++. ..||.++.+.+++.+.+.+.. -.++..+||+|||||.+++.+++ .+..+|+|||.+
T Consensus 106 Ilg~~~F~~l~l~~~pgVlIPRpETEE~V~~Vid~~~~~~----~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S 181 (328)
T KOG2904|consen 106 ILGSQPFGDLDLVCKPGVLIPRPETEEWVEAVIDALNNSE----HSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVS 181 (328)
T ss_pred eeccCccCCceEEecCCeeecCccHHHHHHHHHHHHhhhh----hcccceEEEecCCccHHHHHHHhcCCCceEEEEecc
Confidence 3454 557788776666 479999999999988886532 13566899999999999998765 345579999999
Q ss_pred HHHHHHHHHHhHHHhCCCCceEEEEe----cHHHHHHHHhhhcCCCCCccEEEECCCCCCcc-----------HHH----
Q 021116 188 PWVVSNVLIPNLEWTGFLDVSSIHTV----RVETFLERAEQFVGKDGPFDYMSVTPPYTAVD-----------YEV---- 248 (317)
Q Consensus 188 ~~al~~~ar~N~~~~gl~~~v~ii~g----D~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~-----------~~~---- 248 (317)
+.|+ .+|.+|++++++.+++.+++- |..+-.+ ...+++|+++.||||...+ |+.
T Consensus 182 ~~Ai-~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~------l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lAL 254 (328)
T KOG2904|consen 182 KAAI-KLAKENAQRLKLSGRIEVIHNIMESDASDEHP------LLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLAL 254 (328)
T ss_pred HHHH-HHHHHHHHHHhhcCceEEEecccccccccccc------cccCceeEEecCCCcccccchhhcCchheecCchhhh
Confidence 9999 999999999999999988854 4333221 1247899999999997531 211
Q ss_pred ---------HHHHH-HHcCCcCCCeEEEEEeC
Q 021116 249 ---------LMAQI-SKSALVGKDSFIVVEYP 270 (317)
Q Consensus 249 ---------~l~~L-~~~~lLkpgG~ivv~~~ 270 (317)
+...+ .+.|.|.+||.++++..
T Consensus 255 dGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 255 DGGLEGYDNLVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred ccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence 11111 14589999999999988
|
|
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=99.53 E-value=7.5e-14 Score=136.78 Aligned_cols=121 Identities=17% Similarity=0.267 Sum_probs=92.1
Q ss_pred CeEEEECCCcchHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccE
Q 021116 157 GRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (317)
Q Consensus 157 ~rVLDlgcGtG~l~Ieaas~--Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDl 234 (317)
-+|||++||||..|++++++ |+.+|+++|+|+.++ +.+++|++.|+++ +++++++|+..++... ...||+
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av-~~i~~N~~~N~~~-~~~v~~~Da~~~l~~~------~~~fDv 117 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAV-ESIKNNVEYNSVE-NIEVPNEDAANVLRYR------NRKFHV 117 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHH-HHHHHHHHHhCCC-cEEEEchhHHHHHHHh------CCCCCE
Confidence 48999999999999999987 778999999999999 9999999999986 4889999999988643 357999
Q ss_pred EEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCCCCCccccCCCeEEEEEeecCce
Q 021116 235 MSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDRRFGRT 293 (317)
Q Consensus 235 V~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~~~l~~~~~~~~~~~~r~yG~~ 293 (317)
|++|| |+. ..+.++.+. +.++++|++++.+. +...+++......-++||..
T Consensus 118 IdlDP-fGs--~~~fld~al--~~~~~~glL~vTaT---D~~~L~G~~~~~~~rkYga~ 168 (374)
T TIGR00308 118 IDIDP-FGT--PAPFVDSAI--QASAERGLLLVTAT---DTSALCGNYPKSCLRKYGAN 168 (374)
T ss_pred EEeCC-CCC--cHHHHHHHH--HhcccCCEEEEEec---ccHHhcCCChHHHHHHhCCc
Confidence 99999 543 234455443 26789999999874 22222333222233678754
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.6e-13 Score=131.64 Aligned_cols=99 Identities=21% Similarity=0.355 Sum_probs=81.2
Q ss_pred CCeEEEECCCcchHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccE
Q 021116 156 PGRWLDLYSGTGSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (317)
Q Consensus 156 ~~rVLDlgcGtG~l~Ieaas-~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDl 234 (317)
+.+|||+|||+|.+++.++. .++.+|+++|+|+.++ +.+++|++.|++++ ++++++|+..++.. .+.||+
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av-~~a~~N~~~N~~~~-~~v~~~Da~~~l~~-------~~~fD~ 128 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAV-ELIKKNLELNGLEN-EKVFNKDANALLHE-------ERKFDV 128 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHH-HHHHHHHHHhCCCc-eEEEhhhHHHHHhh-------cCCCCE
Confidence 46899999999999999765 4666899999999999 99999999999965 77999999887642 257999
Q ss_pred EEECCCCCCccHHHHHHH-HHHcCCcCCCeEEEEEe
Q 021116 235 MSVTPPYTAVDYEVLMAQ-ISKSALVGKDSFIVVEY 269 (317)
Q Consensus 235 V~~dPPy~~~~~~~~l~~-L~~~~lLkpgG~ivv~~ 269 (317)
|++||| + .-.+.++. +. .++++|+++++.
T Consensus 129 V~lDP~-G--s~~~~l~~al~---~~~~~gilyvSA 158 (382)
T PRK04338 129 VDIDPF-G--SPAPFLDSAIR---SVKRGGLLCVTA 158 (382)
T ss_pred EEECCC-C--CcHHHHHHHHH---HhcCCCEEEEEe
Confidence 999986 3 33455555 33 478999999984
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.4e-13 Score=145.12 Aligned_cols=147 Identities=12% Similarity=0.097 Sum_probs=107.1
Q ss_pred eecceEEecCCCC-CCCCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcC-CCEEEEEeCCHHHHH
Q 021116 115 KARRKKLLSPKGM-DVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVS 192 (317)
Q Consensus 115 ~~~G~~l~~p~~~-~~rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~G-a~~V~aVDin~~al~ 192 (317)
.|+|..+.+.++. ..||.++.+.+. .+..... ..++.+|||+|||||.+++.++... ..+|+++|+|+.++
T Consensus 83 ~F~~l~~~V~p~VLIPRpeTE~lve~-L~~~~~~-----~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al- 155 (1082)
T PLN02672 83 NRKKLTMMEIPSIFIPEDWSFTFYEG-LNRHPDS-----IFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAV- 155 (1082)
T ss_pred EecCCceeeCCCcccCchhHHHHHHH-HHhcccc-----cCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHH-
Confidence 4678888887766 579999988877 3332110 1246799999999999999887654 46899999999999
Q ss_pred HHHHHhHHHhCCC---------------CceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCc-c----------H
Q 021116 193 NVLIPNLEWTGFL---------------DVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAV-D----------Y 246 (317)
Q Consensus 193 ~~ar~N~~~~gl~---------------~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~-~----------~ 246 (317)
+.|++|++.|+++ ++++++++|+.+.+.. ...+||+|+.||||... + +
T Consensus 156 ~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~~------~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ 229 (1082)
T PLN02672 156 KVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCRD------NNIELDRIVGCIPQILNPNPEAMSKLVTEN 229 (1082)
T ss_pred HHHHHHHHHcCcccccccccccccccccccEEEEECchhhhccc------cCCceEEEEECCCcCCCcchhhcChhhhhc
Confidence 9999999987642 4699999999876521 12369999999999642 1 0
Q ss_pred H------------------------HHHHHHH--HcCCcCCCeEEEEEeCCCCC
Q 021116 247 E------------------------VLMAQIS--KSALVGKDSFIVVEYPLRTD 274 (317)
Q Consensus 247 ~------------------------~~l~~L~--~~~lLkpgG~ivv~~~~~~~ 274 (317)
+ ...+.+. ..++|+|||++++|...++.
T Consensus 230 ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEiG~~q~ 283 (1082)
T PLN02672 230 ASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNMGGRPG 283 (1082)
T ss_pred cccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHH
Confidence 0 0011222 23689999999999986643
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.7e-13 Score=118.14 Aligned_cols=108 Identities=15% Similarity=0.161 Sum_probs=84.8
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccE
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDl 234 (317)
.+.+|||+|||+|.++.++++++ .+|+++|+|+.++ +.+++|+.. .++++++++|+.++.. .+..||.
T Consensus 13 ~~~~vLEiG~G~G~lt~~l~~~~-~~v~~vE~~~~~~-~~~~~~~~~---~~~v~ii~~D~~~~~~-------~~~~~d~ 80 (169)
T smart00650 13 PGDTVLEIGPGKGALTEELLERA-ARVTAIEIDPRLA-PRLREKFAA---ADNLTVIHGDALKFDL-------PKLQPYK 80 (169)
T ss_pred CcCEEEEECCCccHHHHHHHhcC-CeEEEEECCHHHH-HHHHHHhcc---CCCEEEEECchhcCCc-------cccCCCE
Confidence 56799999999999999999885 5799999999998 999999864 2468999999987631 1246999
Q ss_pred EEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCCCCCcc
Q 021116 235 MSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDML 276 (317)
Q Consensus 235 V~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~~~l~ 276 (317)
|+.||||+. ..+++..+.+...+.++|+++++....+.+.
T Consensus 81 vi~n~Py~~--~~~~i~~~l~~~~~~~~~~l~~q~e~a~rl~ 120 (169)
T smart00650 81 VVGNLPYNI--STPILFKLLEEPPAFRDAVLMVQKEVARRLA 120 (169)
T ss_pred EEECCCccc--HHHHHHHHHhcCCCcceEEEEEEHHHhHHhc
Confidence 999999974 2455555554445668999999887665554
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.48 E-value=6.6e-13 Score=122.30 Aligned_cols=110 Identities=14% Similarity=0.097 Sum_probs=88.3
Q ss_pred CCCeEEEECCCcchHHHHHHH--cCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCc
Q 021116 155 RPGRWLDLYSGTGSVGIEAIS--RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF 232 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas--~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~f 232 (317)
+.++|||+|||+|..++.++. .+..+|+++|+|++++ +.|++|++.+|+.++++++.+|+.+.+..+... ...++|
T Consensus 68 ~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~-~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~-~~~~~f 145 (234)
T PLN02781 68 NAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAY-EVGLEFIKKAGVDHKINFIQSDALSALDQLLNN-DPKPEF 145 (234)
T ss_pred CCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHH-HHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhC-CCCCCC
Confidence 578999999999998776554 3356899999999998 999999999999989999999999987654210 113689
Q ss_pred cEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 233 DYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 233 DlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
|+||+|.. +..|.+.++.+. ++|+|||+|++...
T Consensus 146 D~VfiDa~--k~~y~~~~~~~~--~ll~~GG~ii~dn~ 179 (234)
T PLN02781 146 DFAFVDAD--KPNYVHFHEQLL--KLVKVGGIIAFDNT 179 (234)
T ss_pred CEEEECCC--HHHHHHHHHHHH--HhcCCCeEEEEEcC
Confidence 99999963 346677777665 48999999998654
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.1e-13 Score=132.69 Aligned_cols=143 Identities=19% Similarity=0.136 Sum_probs=86.6
Q ss_pred ceEEecCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHH
Q 021116 118 RKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIP 197 (317)
Q Consensus 118 G~~l~~p~~~~~rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~ 197 (317)
+..+...++.++.+-.. +.+.+++++....+ ..+.++||+|||+|++++.++.. +.+|+|||+++.++ +.|++
T Consensus 164 ~~~~~~~~~sFfQvN~~-~~~~l~~~~~~~l~----~~~~~vlDlycG~G~fsl~la~~-~~~V~gvE~~~~av-~~A~~ 236 (352)
T PF05958_consen 164 GLSFRISPGSFFQVNPE-QNEKLYEQALEWLD----LSKGDVLDLYCGVGTFSLPLAKK-AKKVIGVEIVEEAV-EDARE 236 (352)
T ss_dssp TEEEEEETTS---SBHH-HHHHHHHHHHHHCT----T-TTEEEEES-TTTCCHHHHHCC-SSEEEEEES-HHHH-HHHHH
T ss_pred ceEEEECCCcCccCcHH-HHHHHHHHHHHHhh----cCCCcEEEEeecCCHHHHHHHhh-CCeEEEeeCCHHHH-HHHHH
Confidence 44566666666666544 33344444322211 22348999999999999977654 56899999999999 99999
Q ss_pred hHHHhCCCCceEEEEecHHHHHHHHhh------h---cCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEE
Q 021116 198 NLEWTGFLDVSSIHTVRVETFLERAEQ------F---VGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVE 268 (317)
Q Consensus 198 N~~~~gl~~~v~ii~gD~~~~l~~~~~------~---~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~ 268 (317)
|++.|+++| ++++.+++.++...+.. + ......+|+|++|||+. |..+..++.+. +..-++|++
T Consensus 237 Na~~N~i~n-~~f~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~-G~~~~~~~~~~-----~~~~ivYvS 309 (352)
T PF05958_consen 237 NAKLNGIDN-VEFIRGDAEDFAKALAKAREFNRLKGIDLKSFKFDAVILDPPRA-GLDEKVIELIK-----KLKRIVYVS 309 (352)
T ss_dssp HHHHTT--S-EEEEE--SHHCCCHHCCS-GGTTGGGS-GGCTTESEEEE---TT--SCHHHHHHHH-----HSSEEEEEE
T ss_pred HHHHcCCCc-ceEEEeeccchhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCCCC-CchHHHHHHHh-----cCCeEEEEE
Confidence 999999965 99999988765432210 0 01123689999999985 44456666654 236799999
Q ss_pred eCCCCC
Q 021116 269 YPLRTD 274 (317)
Q Consensus 269 ~~~~~~ 274 (317)
|+..+-
T Consensus 310 CnP~tl 315 (352)
T PF05958_consen 310 CNPATL 315 (352)
T ss_dssp S-HHHH
T ss_pred CCHHHH
Confidence 997653
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.1e-12 Score=106.34 Aligned_cols=117 Identities=18% Similarity=0.103 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEE
Q 021116 134 EVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHT 212 (317)
Q Consensus 134 ~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~-Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~ 212 (317)
..++..+.+.+.. .++.+|||+|||+|.+++.++++ +..+|+++|.++.++ +.+++|++.+++. +++++.
T Consensus 5 ~~~~~~~~~~~~~-------~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~-~~a~~~~~~~~~~-~~~~~~ 75 (124)
T TIGR02469 5 REVRALTLSKLRL-------RPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEAL-RLIERNARRFGVS-NIVIVE 75 (124)
T ss_pred HHHHHHHHHHcCC-------CCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHH-HHHHHHHHHhCCC-ceEEEe
Confidence 3444445555432 34679999999999999998876 346899999999998 9999999998876 488999
Q ss_pred ecHHHHHHHHhhhcCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 213 VRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 213 gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
+|+...+... .++||+|+++.+.. .+.++++.+. ++|+|||++++..
T Consensus 76 ~~~~~~~~~~------~~~~D~v~~~~~~~--~~~~~l~~~~--~~Lk~gG~li~~~ 122 (124)
T TIGR02469 76 GDAPEALEDS------LPEPDRVFIGGSGG--LLQEILEAIW--RRLRPGGRIVLNA 122 (124)
T ss_pred ccccccChhh------cCCCCEEEECCcch--hHHHHHHHHH--HHcCCCCEEEEEe
Confidence 9876533221 36899999986432 4456666665 5899999999864
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.2e-13 Score=123.89 Aligned_cols=119 Identities=16% Similarity=0.217 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEE
Q 021116 134 EVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHT 212 (317)
Q Consensus 134 ~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~-Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~ 212 (317)
...++.+.+.+.. .+|.+|||+|||||-+++.+++. |..+|+++|+|+.|+ +.+++-+...+..+ ++++.
T Consensus 37 ~~Wr~~~i~~~~~-------~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML-~~a~~k~~~~~~~~-i~fv~ 107 (238)
T COG2226 37 RLWRRALISLLGI-------KPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESML-EVAREKLKKKGVQN-VEFVV 107 (238)
T ss_pred HHHHHHHHHhhCC-------CCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHH-HHHHHHhhccCccc-eEEEE
Confidence 4456666666543 36899999999999999987764 556899999999999 99999999888877 99999
Q ss_pred ecHHHHHHHHhhhcCCCCCccEEEECCCCCC---ccHHHHHHHHHHcCCcCCCeEEEEEeCCC
Q 021116 213 VRVETFLERAEQFVGKDGPFDYMSVTPPYTA---VDYEVLMAQISKSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 213 gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~---~~~~~~l~~L~~~~lLkpgG~ivv~~~~~ 272 (317)
+|+++. |.++.+||+|.+. |+. .++++.|+.+. |+|+|||++++-.-..
T Consensus 108 ~dAe~L-------Pf~D~sFD~vt~~--fglrnv~d~~~aL~E~~--RVlKpgG~~~vle~~~ 159 (238)
T COG2226 108 GDAENL-------PFPDNSFDAVTIS--FGLRNVTDIDKALKEMY--RVLKPGGRLLVLEFSK 159 (238)
T ss_pred echhhC-------CCCCCccCEEEee--ehhhcCCCHHHHHHHHH--HhhcCCeEEEEEEcCC
Confidence 999874 5678999999997 433 35677777765 7999999887655433
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.8e-12 Score=115.79 Aligned_cols=120 Identities=19% Similarity=0.118 Sum_probs=91.9
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEe
Q 021116 135 VVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTV 213 (317)
Q Consensus 135 ~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas-~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~g 213 (317)
...+.+++.+.....+ .++.+|||+|||+|.+++.++. ....+|+++|.++.++ +.|++|++.+++.+ ++++++
T Consensus 28 ~~~~~~~d~l~l~~~l---~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l-~~A~~~~~~~~l~~-i~~~~~ 102 (187)
T PRK00107 28 LWERHILDSLAIAPYL---PGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKI-AFLREVAAELGLKN-VTVVHG 102 (187)
T ss_pred HHHHHHHHHHHHHhhc---CCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHH-HHHHHHHHHcCCCC-EEEEec
Confidence 4455555655332111 2378999999999999998765 3445899999999999 99999999999866 999999
Q ss_pred cHHHHHHHHhhhcCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCCC
Q 021116 214 RVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 214 D~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~ 272 (317)
|+.++.. .++||+|+++. ...+++.++.+. ++|+|||++++.....
T Consensus 103 d~~~~~~--------~~~fDlV~~~~---~~~~~~~l~~~~--~~LkpGG~lv~~~~~~ 148 (187)
T PRK00107 103 RAEEFGQ--------EEKFDVVTSRA---VASLSDLVELCL--PLLKPGGRFLALKGRD 148 (187)
T ss_pred cHhhCCC--------CCCccEEEEcc---ccCHHHHHHHHH--HhcCCCeEEEEEeCCC
Confidence 9877421 36899999974 345677777665 5899999999887654
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.6e-12 Score=121.20 Aligned_cols=111 Identities=17% Similarity=0.146 Sum_probs=91.5
Q ss_pred CCCCeEEEECCCcchHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCC
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGP 231 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~-G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~ 231 (317)
.+.++|||+|||+|..++.++.. + ..+|+++|.+++.+ +.|++|++.+|+.++++++.+|+.+.+..+.. ....++
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~-~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~-~~~~~~ 194 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSL-EVAKRYYELAGVSHKVNVKHGLAAESLKSMIQ-NGEGSS 194 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHH-HHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHh-cccCCC
Confidence 35789999999999999987752 2 34799999999998 99999999999999999999999998876421 112368
Q ss_pred ccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 232 FDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 232 fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
||+||+|++ +..|.+.++.+. ++|++||+|++..-
T Consensus 195 FD~VFIDa~--K~~Y~~y~e~~l--~lL~~GGvIV~DNv 229 (278)
T PLN02476 195 YDFAFVDAD--KRMYQDYFELLL--QLVRVGGVIVMDNV 229 (278)
T ss_pred CCEEEECCC--HHHHHHHHHHHH--HhcCCCcEEEEecC
Confidence 999999985 457888888776 48999999998754
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.4e-12 Score=110.07 Aligned_cols=106 Identities=18% Similarity=0.305 Sum_probs=82.9
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCc-eEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDV-SSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~-v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
++.+|||+|||+|.+++.++.++ .+|+++|++++++ +.+++|++.++..++ +.++.+|+.+.+ ....||
T Consensus 23 ~~~~vLd~G~G~G~~~~~l~~~~-~~v~~~D~s~~~~-~~a~~~~~~~~~~~~~~~~~~~d~~~~~--------~~~~~d 92 (188)
T PRK14968 23 KGDRVLEVGTGSGIVAIVAAKNG-KKVVGVDINPYAV-ECAKCNAKLNNIRNNGVEVIRSDLFEPF--------RGDKFD 92 (188)
T ss_pred CCCEEEEEccccCHHHHHHHhhc-ceEEEEECCHHHH-HHHHHHHHHcCCCCcceEEEeccccccc--------cccCce
Confidence 57799999999999999888885 5799999999998 999999999888654 888899976543 134799
Q ss_pred EEEECCCCCCcc----------------------HHHHHHHHHHcCCcCCCeEEEEEeCCC
Q 021116 234 YMSVTPPYTAVD----------------------YEVLMAQISKSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 234 lV~~dPPy~~~~----------------------~~~~l~~L~~~~lLkpgG~ivv~~~~~ 272 (317)
+|++||||.... +...++.+. ++|+|||.+++..+..
T Consensus 93 ~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~Lk~gG~~~~~~~~~ 151 (188)
T PRK14968 93 VILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVG--RYLKPGGRILLLQSSL 151 (188)
T ss_pred EEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHH--HhcCCCeEEEEEEccc
Confidence 999999986411 122333333 6899999988876643
|
|
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.42 E-value=8.6e-13 Score=131.56 Aligned_cols=160 Identities=14% Similarity=0.112 Sum_probs=114.1
Q ss_pred cccccceEEEEeeeecceEEecCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEE
Q 021116 102 ERTTHRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEV 181 (317)
Q Consensus 102 p~~~~~il~ii~G~~~G~~l~~p~~~~~rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V 181 (317)
|....+.-.+|...+.|.++.+.++.++.--+. .++.++...+...++ ..++.++|+|||||.+|+ ++++++++|
T Consensus 334 ~~~l~~~~~~I~E~l~~ltF~iSp~AFFQ~Nt~-~aevLys~i~e~~~l---~~~k~llDv~CGTG~igl-ala~~~~~V 408 (534)
T KOG2187|consen 334 PLQLVGGDPYITESLLGLTFRISPGAFFQTNTS-AAEVLYSTIGEWAGL---PADKTLLDVCCGTGTIGL-ALARGVKRV 408 (534)
T ss_pred CeEEEccccEEEeecCCeEEEECCchhhccCcH-HHHHHHHHHHHHhCC---CCCcEEEEEeecCCceeh-hhhccccce
Confidence 333333334556678899999988876433222 344444444433222 457899999999999998 556778899
Q ss_pred EEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc-EEEECCCCCCccHHHHHHHHHHcCCcC
Q 021116 182 HFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD-YMSVTPPYTAVDYEVLMAQISKSALVG 260 (317)
Q Consensus 182 ~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD-lV~~dPPy~~~~~~~~l~~L~~~~lLk 260 (317)
++||+++.++ +-|+.|++.||++| .+|++|-+++.+..+.+ ..-+.-+ ++++|||. .+.....+++|.+ .-+
T Consensus 409 iGvEi~~~aV-~dA~~nA~~NgisN-a~Fi~gqaE~~~~sl~~--~~~~~~~~v~iiDPpR-~Glh~~~ik~l~~--~~~ 481 (534)
T KOG2187|consen 409 IGVEISPDAV-EDAEKNAQINGISN-ATFIVGQAEDLFPSLLT--PCCDSETLVAIIDPPR-KGLHMKVIKALRA--YKN 481 (534)
T ss_pred eeeecChhhc-chhhhcchhcCccc-eeeeecchhhccchhcc--cCCCCCceEEEECCCc-ccccHHHHHHHHh--ccC
Confidence 9999999999 99999999999986 89999977777655421 0112346 88899997 4566677777764 345
Q ss_pred CCeEEEEEeCCCC
Q 021116 261 KDSFIVVEYPLRT 273 (317)
Q Consensus 261 pgG~ivv~~~~~~ 273 (317)
+.-++|++|+..+
T Consensus 482 ~~rlvyvSCn~~t 494 (534)
T KOG2187|consen 482 PRRLVYVSCNPHT 494 (534)
T ss_pred ccceEEEEcCHHH
Confidence 7888999999764
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.6e-12 Score=110.92 Aligned_cols=107 Identities=17% Similarity=0.166 Sum_probs=85.1
Q ss_pred CCCeEEEECCCcchHHHHHHH-cC-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCc
Q 021116 155 RPGRWLDLYSGTGSVGIEAIS-RG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF 232 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas-~G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~f 232 (317)
++.+|||+|||+|.++..++. .+ ..+++++|+|++++ +.|+++++.+++. +++++++|+.+ +... . .+.|
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i-~~a~~~~~~~~~~-ni~~~~~d~~~-l~~~----~-~~~~ 74 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMI-EYAKKRAKELGLD-NIEFIQGDIED-LPQE----L-EEKF 74 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHH-HHHHHHHHHTTST-TEEEEESBTTC-GCGC----S-STTE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHH-HHhhccccccccc-ccceEEeehhc-cccc----c-CCCe
Confidence 578999999999999998883 32 46899999999999 9999999999997 69999999988 3210 0 1689
Q ss_pred cEEEECCCCC-CccHHHHHHHHHHcCCcCCCeEEEEEeCC
Q 021116 233 DYMSVTPPYT-AVDYEVLMAQISKSALVGKDSFIVVEYPL 271 (317)
Q Consensus 233 DlV~~dPPy~-~~~~~~~l~~L~~~~lLkpgG~ivv~~~~ 271 (317)
|+|++++++. ..+....++.+. +.|+++|++++....
T Consensus 75 D~I~~~~~l~~~~~~~~~l~~~~--~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 75 DIIISNGVLHHFPDPEKVLKNII--RLLKPGGILIISDPN 112 (152)
T ss_dssp EEEEEESTGGGTSHHHHHHHHHH--HHEEEEEEEEEEEEE
T ss_pred eEEEEcCchhhccCHHHHHHHHH--HHcCCCcEEEEEECC
Confidence 9999998753 335566677665 489999999987764
|
... |
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.9e-12 Score=119.87 Aligned_cols=108 Identities=18% Similarity=0.164 Sum_probs=80.8
Q ss_pred CCCCeEEEECCCcchHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCC
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGP 231 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~-G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~ 231 (317)
.++.+|||+|||+|..++.++.. + ..+|+++|+++.++ +.+++|++.+|+.+ +++++.|+..+... .+.
T Consensus 70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l-~~~~~n~~~~g~~~-v~~~~~D~~~~~~~-------~~~ 140 (264)
T TIGR00446 70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRT-KVLIANINRCGVLN-VAVTNFDGRVFGAA-------VPK 140 (264)
T ss_pred CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHH-HHHHHHHHHcCCCc-EEEecCCHHHhhhh-------ccC
Confidence 36789999999999999886653 2 34799999999999 99999999999864 89999998765321 256
Q ss_pred ccEEEECCCCCCc-c------------HH-------HHHHHHH-HcCCcCCCeEEEEEeC
Q 021116 232 FDYMSVTPPYTAV-D------------YE-------VLMAQIS-KSALVGKDSFIVVEYP 270 (317)
Q Consensus 232 fDlV~~dPPy~~~-~------------~~-------~~l~~L~-~~~lLkpgG~ivv~~~ 270 (317)
||.|++|||+... . .+ .+.+.|. ..++|+|||+++.++-
T Consensus 141 fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstc 200 (264)
T TIGR00446 141 FDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTC 200 (264)
T ss_pred CCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 9999999997531 0 00 1112222 2468999999876643
|
|
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=8e-12 Score=120.70 Aligned_cols=107 Identities=17% Similarity=0.172 Sum_probs=87.8
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
.+|.+|+|+|||.|.+++.+++.|..+|+++|+||+++ +.+++|++.|+++++++.++||+.++.... +.+|
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~-~~L~eNi~LN~v~~~v~~i~gD~rev~~~~-------~~aD 258 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAV-EYLKENIRLNKVEGRVEPILGDAREVAPEL-------GVAD 258 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHH-HHHHHHHHhcCccceeeEEeccHHHhhhcc-------ccCC
Confidence 46899999999999999999999987799999999999 999999999999998999999999987542 6799
Q ss_pred EEEECCCCCCc-cHHHHHHHHHHcCCcCCCeEEEEEeCCCCC
Q 021116 234 YMSVTPPYTAV-DYEVLMAQISKSALVGKDSFIVVEYPLRTD 274 (317)
Q Consensus 234 lV~~dPPy~~~-~~~~~l~~L~~~~lLkpgG~ivv~~~~~~~ 274 (317)
-|+++-|.... .++..++ .++++|++.......+.
T Consensus 259 rIim~~p~~a~~fl~~A~~------~~k~~g~iHyy~~~~e~ 294 (341)
T COG2520 259 RIIMGLPKSAHEFLPLALE------LLKDGGIIHYYEFVPED 294 (341)
T ss_pred EEEeCCCCcchhhHHHHHH------HhhcCcEEEEEeccchh
Confidence 99999875422 2233332 46779998876654443
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=9.1e-12 Score=115.42 Aligned_cols=105 Identities=15% Similarity=0.232 Sum_probs=85.1
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccE
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDl 234 (317)
.+.+|||+|||+|.+++.++..|. +|+++|++++++ +.|+++++..|+.++++++++|+.++.... .++||+
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~g~-~v~~vD~s~~~l-~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~------~~~fD~ 115 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAELGH-QVILCDLSAEMI-QRAKQAAEAKGVSDNMQFIHCAAQDIAQHL------ETPVDL 115 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHcCC-EEEEEECCHHHH-HHHHHHHHhcCCccceEEEEcCHHHHhhhc------CCCCCE
Confidence 467999999999999999888875 799999999999 999999999988778999999998764322 468999
Q ss_pred EEECCCCC-CccHHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 235 MSVTPPYT-AVDYEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 235 V~~dPPy~-~~~~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
|++...+. ..+....++.+. ++|+|||++++..
T Consensus 116 V~~~~vl~~~~~~~~~l~~~~--~~LkpgG~l~i~~ 149 (255)
T PRK11036 116 ILFHAVLEWVADPKSVLQTLW--SVLRPGGALSLMF 149 (255)
T ss_pred EEehhHHHhhCCHHHHHHHHH--HHcCCCeEEEEEE
Confidence 99876532 224455666665 5899999998754
|
|
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=99.38 E-value=9.8e-13 Score=114.99 Aligned_cols=81 Identities=22% Similarity=0.303 Sum_probs=60.4
Q ss_pred eEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEE
Q 021116 158 RWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSV 237 (317)
Q Consensus 158 rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~ 237 (317)
.|+|+|||.|.-++..++. +.+|++||+|+..+ ++|+.|++..|+.++++++++|+.+.+.... ....||+||+
T Consensus 2 ~vlD~fcG~GGNtIqFA~~-~~~Viaidid~~~~-~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~----~~~~~D~vFl 75 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFART-FDRVIAIDIDPERL-ECAKHNAEVYGVADNIDFICGDFFELLKRLK----SNKIFDVVFL 75 (163)
T ss_dssp EEEETT-TTSHHHHHHHHT-T-EEEEEES-HHHH-HHHHHHHHHTT-GGGEEEEES-HHHHGGGB----------SEEEE
T ss_pred EEEEeccCcCHHHHHHHHh-CCeEEEEECCHHHH-HHHHHHHHHcCCCCcEEEEeCCHHHHHhhcc----ccccccEEEE
Confidence 6999999999999988877 46899999999999 9999999999999999999999998764431 0112899999
Q ss_pred CCCCCCc
Q 021116 238 TPPYTAV 244 (317)
Q Consensus 238 dPPy~~~ 244 (317)
+||++..
T Consensus 76 SPPWGGp 82 (163)
T PF09445_consen 76 SPPWGGP 82 (163)
T ss_dssp ---BSSG
T ss_pred CCCCCCc
Confidence 9999853
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.4e-12 Score=114.19 Aligned_cols=102 Identities=14% Similarity=0.009 Sum_probs=79.2
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCC--CEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCC
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGC--SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGP 231 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga--~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~ 231 (317)
.++.+|||+|||+|.++..++.... .+|+++|+++.++ +.|++|++.+|+. +++++.+|+.+... ...+
T Consensus 76 ~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~-~~A~~~~~~~g~~-~v~~~~~d~~~~~~-------~~~~ 146 (215)
T TIGR00080 76 KPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELA-EKAERRLRKLGLD-NVIVIVGDGTQGWE-------PLAP 146 (215)
T ss_pred CCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHH-HHHHHHHHHCCCC-CeEEEECCcccCCc-------ccCC
Confidence 4688999999999999987776532 3699999999998 9999999999984 59999999876432 1257
Q ss_pred ccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCC
Q 021116 232 FDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPL 271 (317)
Q Consensus 232 fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~ 271 (317)
||+|+++++... + .+.+. +.|+|||++++....
T Consensus 147 fD~Ii~~~~~~~--~---~~~~~--~~L~~gG~lv~~~~~ 179 (215)
T TIGR00080 147 YDRIYVTAAGPK--I---PEALI--DQLKEGGILVMPVGE 179 (215)
T ss_pred CCEEEEcCCccc--c---cHHHH--HhcCcCcEEEEEEcC
Confidence 999999976432 2 22232 268999999987653
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=99.38 E-value=1e-11 Score=112.54 Aligned_cols=127 Identities=18% Similarity=0.261 Sum_probs=97.2
Q ss_pred hHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEE
Q 021116 133 MEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSI 210 (317)
Q Consensus 133 ~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~-G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~i 210 (317)
......+++..+... .+.++||++||++|.-++.++.. + ..+|+.+|.|++.+ +.|++|++..|+.+++++
T Consensus 29 i~~~~g~lL~~l~~~------~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~-~~A~~~~~~ag~~~~I~~ 101 (205)
T PF01596_consen 29 ISPETGQLLQMLVRL------TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERA-EIARENFRKAGLDDRIEV 101 (205)
T ss_dssp HHHHHHHHHHHHHHH------HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHH-HHHHHHHHHTTGGGGEEE
T ss_pred cCHHHHHHHHHHHHh------cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHH-HHHHHHHHhcCCCCcEEE
Confidence 333344444554432 35689999999999999987753 2 35899999999998 999999999999999999
Q ss_pred EEecHHHHHHHHhhhcCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCC
Q 021116 211 HTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPL 271 (317)
Q Consensus 211 i~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~ 271 (317)
+.+|+.+++..+.. ....++||+||+|. .+..|...++.+. ++|++||+|++....
T Consensus 102 ~~gda~~~l~~l~~-~~~~~~fD~VFiDa--~K~~y~~y~~~~~--~ll~~ggvii~DN~l 157 (205)
T PF01596_consen 102 IEGDALEVLPELAN-DGEEGQFDFVFIDA--DKRNYLEYFEKAL--PLLRPGGVIIADNVL 157 (205)
T ss_dssp EES-HHHHHHHHHH-TTTTTSEEEEEEES--TGGGHHHHHHHHH--HHEEEEEEEEEETTT
T ss_pred EEeccHhhHHHHHh-ccCCCceeEEEEcc--cccchhhHHHHHh--hhccCCeEEEEcccc
Confidence 99999999876531 01125799999996 4668888888776 489999999997654
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=6.4e-12 Score=125.13 Aligned_cols=107 Identities=14% Similarity=0.142 Sum_probs=81.4
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGC-SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF 232 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga-~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~f 232 (317)
.++.+|||+|||+|..++.++.++. .+|+++|+++.++ +.+++|++.+|+. ++++++|+.+..... ...+|
T Consensus 243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l-~~~~~n~~~~g~~--~~~~~~D~~~~~~~~-----~~~~f 314 (427)
T PRK10901 243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRL-ERVRENLQRLGLK--ATVIVGDARDPAQWW-----DGQPF 314 (427)
T ss_pred CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHH-HHHHHHHHHcCCC--eEEEEcCcccchhhc-----ccCCC
Confidence 3688999999999999998887643 5899999999999 9999999999984 689999987643211 13579
Q ss_pred cEEEECCCCCC-cc---------------H-------HHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 233 DYMSVTPPYTA-VD---------------Y-------EVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 233 DlV~~dPPy~~-~~---------------~-------~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
|.|++|||+.. +. . .++++. ..++|+|||+++..+-
T Consensus 315 D~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~--a~~~LkpGG~lvystc 373 (427)
T PRK10901 315 DRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDA--LWPLLKPGGTLLYATC 373 (427)
T ss_pred CEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHH--HHHhcCCCCEEEEEeC
Confidence 99999999852 10 0 122222 2368999999886553
|
|
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.4e-12 Score=116.15 Aligned_cols=99 Identities=18% Similarity=0.306 Sum_probs=70.7
Q ss_pred CCCCeEEEECCCcchHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF 232 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas-~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~f 232 (317)
.++..|+|+|||.|.+++.+++ ..+.+|+++|+||+++ +.+++|++.|++++++.++++|+.++.. ...|
T Consensus 100 ~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~-~~L~~Ni~lNkv~~~i~~~~~D~~~~~~--------~~~~ 170 (200)
T PF02475_consen 100 KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAV-EYLKENIRLNKVENRIEVINGDAREFLP--------EGKF 170 (200)
T ss_dssp -TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHH-HHHHHHHHHTT-TTTEEEEES-GGG-----------TT-E
T ss_pred CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHH-HHHHHHHHHcCCCCeEEEEcCCHHHhcC--------cccc
Confidence 3689999999999999999887 3456899999999999 9999999999999999999999998874 3789
Q ss_pred cEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEE
Q 021116 233 DYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIV 266 (317)
Q Consensus 233 DlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~iv 266 (317)
|.|+++.|..... .++.+. .+++++|++-
T Consensus 171 drvim~lp~~~~~---fl~~~~--~~~~~~g~ih 199 (200)
T PF02475_consen 171 DRVIMNLPESSLE---FLDAAL--SLLKEGGIIH 199 (200)
T ss_dssp EEEEE--TSSGGG---GHHHHH--HHEEEEEEEE
T ss_pred CEEEECChHHHHH---HHHHHH--HHhcCCcEEE
Confidence 9999998865322 233322 2578888763
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.2e-11 Score=110.41 Aligned_cols=106 Identities=16% Similarity=0.155 Sum_probs=83.0
Q ss_pred CCCeEEEECCCcchHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCc
Q 021116 155 RPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF 232 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~-G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~f 232 (317)
++.+|||+|||+|.++..++.. + ..+|+++|+++.++ +.+++|++..++ ++++++++|+.++. ...++|
T Consensus 45 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~-~~a~~~~~~~~~-~~v~~~~~d~~~~~-------~~~~~f 115 (231)
T TIGR02752 45 AGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENML-SVGRQKVKDAGL-HNVELVHGNAMELP-------FDDNSF 115 (231)
T ss_pred CCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHHHhcCC-CceEEEEechhcCC-------CCCCCc
Confidence 5789999999999999877754 3 34899999999998 999999988887 45899999987642 124689
Q ss_pred cEEEECCCCCC-ccHHHHHHHHHHcCCcCCCeEEEEEeCC
Q 021116 233 DYMSVTPPYTA-VDYEVLMAQISKSALVGKDSFIVVEYPL 271 (317)
Q Consensus 233 DlV~~dPPy~~-~~~~~~l~~L~~~~lLkpgG~ivv~~~~ 271 (317)
|+|+++-.+.. .++..+++.+. ++|+|||++++....
T Consensus 116 D~V~~~~~l~~~~~~~~~l~~~~--~~Lk~gG~l~~~~~~ 153 (231)
T TIGR02752 116 DYVTIGFGLRNVPDYMQVLREMY--RVVKPGGKVVCLETS 153 (231)
T ss_pred cEEEEecccccCCCHHHHHHHHH--HHcCcCeEEEEEECC
Confidence 99999765432 35566666654 589999999876653
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.8e-12 Score=119.48 Aligned_cols=114 Identities=21% Similarity=0.242 Sum_probs=75.8
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEE
Q 021116 135 VVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHT 212 (317)
Q Consensus 135 ~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~-G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~ 212 (317)
.+++.+.+.+.. .++.+|||+|||||.++..++.. + ..+|+++|+++.++ +.|++.++..+.. ++++++
T Consensus 34 ~wr~~~~~~~~~-------~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML-~~a~~k~~~~~~~-~i~~v~ 104 (233)
T PF01209_consen 34 RWRRKLIKLLGL-------RPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGML-EVARKKLKREGLQ-NIEFVQ 104 (233)
T ss_dssp ---SHHHHHHT---------S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHH-HHHHHHHHHTT---SEEEEE
T ss_pred HHHHHHHhccCC-------CCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHH-HHHHHHHHhhCCC-CeeEEE
Confidence 345555555543 46889999999999999988764 3 24899999999999 9999999988875 699999
Q ss_pred ecHHHHHHHHhhhcCCCCCccEEEECCCCCC---ccHHHHHHHHHHcCCcCCCeEEEEE
Q 021116 213 VRVETFLERAEQFVGKDGPFDYMSVTPPYTA---VDYEVLMAQISKSALVGKDSFIVVE 268 (317)
Q Consensus 213 gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~---~~~~~~l~~L~~~~lLkpgG~ivv~ 268 (317)
+|+.+. |..+++||+|++. |.. .+....++.+. |+|+|||++++-
T Consensus 105 ~da~~l-------p~~d~sfD~v~~~--fglrn~~d~~~~l~E~~--RVLkPGG~l~il 152 (233)
T PF01209_consen 105 GDAEDL-------PFPDNSFDAVTCS--FGLRNFPDRERALREMY--RVLKPGGRLVIL 152 (233)
T ss_dssp -BTTB---------S-TT-EEEEEEE--S-GGG-SSHHHHHHHHH--HHEEEEEEEEEE
T ss_pred cCHHHh-------cCCCCceeEEEHH--hhHHhhCCHHHHHHHHH--HHcCCCeEEEEe
Confidence 999874 2346899999985 332 24556666554 699999987644
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.1e-11 Score=111.69 Aligned_cols=102 Identities=19% Similarity=0.180 Sum_probs=79.4
Q ss_pred CCCCeEEEECCCcchHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCC
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGP 231 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~-G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~ 231 (317)
.++.+|||+|||+|..+..++.. + ..+|+++|+++.++ +.|++|++.+++.++++++.+|+.+.+. ...+
T Consensus 71 ~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~-~~a~~~l~~~~~~~~v~~~~~d~~~~~~-------~~~~ 142 (205)
T PRK13944 71 RPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELA-IYAAQNIERLGYWGVVEVYHGDGKRGLE-------KHAP 142 (205)
T ss_pred CCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHH-HHHHHHHHHcCCCCcEEEEECCcccCCc-------cCCC
Confidence 35789999999999999876653 2 34799999999998 9999999999987779999999876432 1368
Q ss_pred ccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 232 FDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 232 fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
||+|+++.... .+ .+.+. +.|+|||++++...
T Consensus 143 fD~Ii~~~~~~--~~---~~~l~--~~L~~gG~lvi~~~ 174 (205)
T PRK13944 143 FDAIIVTAAAS--TI---PSALV--RQLKDGGVLVIPVE 174 (205)
T ss_pred ccEEEEccCcc--hh---hHHHH--HhcCcCcEEEEEEc
Confidence 99999986532 22 23333 36899999988664
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.3e-11 Score=123.15 Aligned_cols=109 Identities=15% Similarity=0.138 Sum_probs=81.9
Q ss_pred CCCCeEEEECCCcchHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCC
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGP 231 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~--Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~ 231 (317)
.++.+|||+|||+|..++.++.. +..+|+++|+++.++ +.+++|++..|+.+ ++++++|+.++.... .++
T Consensus 236 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl-~~~~~n~~r~g~~~-v~~~~~Da~~l~~~~------~~~ 307 (431)
T PRK14903 236 EPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKI-QLVEKHAKRLKLSS-IEIKIADAERLTEYV------QDT 307 (431)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHH-HHHHHHHHHcCCCe-EEEEECchhhhhhhh------hcc
Confidence 36789999999999999877653 345899999999999 99999999999864 899999988754222 367
Q ss_pred ccEEEECCCCCC-ccH---------------H----HHHHHHH-HcCCcCCCeEEEEEeC
Q 021116 232 FDYMSVTPPYTA-VDY---------------E----VLMAQIS-KSALVGKDSFIVVEYP 270 (317)
Q Consensus 232 fDlV~~dPPy~~-~~~---------------~----~~l~~L~-~~~lLkpgG~ivv~~~ 270 (317)
||.|++|||+.. +.+ . .+.+.|. ..+.|+|||+++.++-
T Consensus 308 fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTC 367 (431)
T PRK14903 308 FDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTC 367 (431)
T ss_pred CCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 999999999842 210 0 1112222 2468999999876544
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=6.9e-12 Score=125.39 Aligned_cols=108 Identities=13% Similarity=0.155 Sum_probs=81.6
Q ss_pred CCCCeEEEECCCcchHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCC
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGP 231 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~--Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~ 231 (317)
.++.+|||+|||+|..++.+++. +..+|+++|+++.++ +.+++|++.+|+.+ ++++++|+.+....+ .+.
T Consensus 249 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l-~~~~~n~~~~g~~~-v~~~~~D~~~~~~~~------~~~ 320 (444)
T PRK14902 249 KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKL-KLIEENAKRLGLTN-IETKALDARKVHEKF------AEK 320 (444)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHH-HHHHHHHHHcCCCe-EEEEeCCcccccchh------ccc
Confidence 35789999999999999987764 345899999999999 99999999999966 999999987754222 257
Q ss_pred ccEEEECCCCCC-ccH------------HH-------HHHHHH-HcCCcCCCeEEEEEe
Q 021116 232 FDYMSVTPPYTA-VDY------------EV-------LMAQIS-KSALVGKDSFIVVEY 269 (317)
Q Consensus 232 fDlV~~dPPy~~-~~~------------~~-------~l~~L~-~~~lLkpgG~ivv~~ 269 (317)
||+|++|||+.. +.+ .+ +.+.+. ..++|+|||.++.++
T Consensus 321 fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvyst 379 (444)
T PRK14902 321 FDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYST 379 (444)
T ss_pred CCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEc
Confidence 999999999742 110 11 011222 246899999988553
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.9e-11 Score=109.89 Aligned_cols=112 Identities=13% Similarity=0.040 Sum_probs=83.5
Q ss_pred CCCeEEEECCCcchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
.+.+|||+|||+|.+++.++... ..+|++||+++.++ +.|++|++.+++. +++++++|+.+.+... ...++||
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i-~~a~~~~~~~~~~-~v~~~~~d~~~~l~~~----~~~~~~D 113 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGV-GKALKKIEEEGLT-NLRLLCGDAVEVLLDM----FPDGSLD 113 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHH-HHHHHHHHHcCCC-CEEEEecCHHHHHHHH----cCccccc
Confidence 46799999999999999877653 34799999999999 9999999998874 5999999993333211 1246799
Q ss_pred EEEECCC--CCCc-------cHHHHHHHHHHcCCcCCCeEEEEEeCCCCC
Q 021116 234 YMSVTPP--YTAV-------DYEVLMAQISKSALVGKDSFIVVEYPLRTD 274 (317)
Q Consensus 234 lV~~dPP--y~~~-------~~~~~l~~L~~~~lLkpgG~ivv~~~~~~~ 274 (317)
.|+++.| +... .....++.+. ++|+|||++++.++....
T Consensus 114 ~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~--~~LkpgG~l~i~~~~~~~ 161 (202)
T PRK00121 114 RIYLNFPDPWPKKRHHKRRLVQPEFLALYA--RKLKPGGEIHFATDWEGY 161 (202)
T ss_pred eEEEECCCCCCCccccccccCCHHHHHHHH--HHcCCCCEEEEEcCCHHH
Confidence 9998643 2210 1355666665 489999999998765443
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.8e-11 Score=109.45 Aligned_cols=100 Identities=13% Similarity=0.198 Sum_probs=77.6
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccE
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDl 234 (317)
.+.+|||+|||+|.+++.++.+|. +|+++|+++.++ +.++++++.+|+. +++...|+..+. . .++||+
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~g~-~V~~iD~s~~~l-~~a~~~~~~~~~~--v~~~~~d~~~~~--~------~~~fD~ 97 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLAGY-DVRAWDHNPASI-ASVLDMKARENLP--LRTDAYDINAAA--L------NEDYDF 97 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHH-HHHHHHHHHhCCC--ceeEeccchhcc--c------cCCCCE
Confidence 467999999999999999988886 799999999999 9999999888874 667777765431 1 257999
Q ss_pred EEECCCCCCc---cHHHHHHHHHHcCCcCCCeEEEEE
Q 021116 235 MSVTPPYTAV---DYEVLMAQISKSALVGKDSFIVVE 268 (317)
Q Consensus 235 V~~dPPy~~~---~~~~~l~~L~~~~lLkpgG~ivv~ 268 (317)
|++..+++.. .....++.+. ++|+|||++++.
T Consensus 98 I~~~~~~~~~~~~~~~~~l~~~~--~~LkpgG~lli~ 132 (195)
T TIGR00477 98 IFSTVVFMFLQAGRVPEIIANMQ--AHTRPGGYNLIV 132 (195)
T ss_pred EEEecccccCCHHHHHHHHHHHH--HHhCCCcEEEEE
Confidence 9998776532 3345565554 589999985543
|
Part of a tellurite-reducing operon tehA and tehB |
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.5e-11 Score=119.14 Aligned_cols=106 Identities=16% Similarity=0.134 Sum_probs=84.1
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccE
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDl 234 (317)
++.+|||+|||+|.+++.++.....+|++||+++.++ +.++++++..++.++++++.+|+.+. +..+++||+
T Consensus 118 ~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i-~~a~~~~~~~g~~~~v~~~~~D~~~~-------~~~~~~FD~ 189 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQA-ARANALAAAQGLSDKVSFQVADALNQ-------PFEDGQFDL 189 (340)
T ss_pred CCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHH-HHHHHHHHhcCCCCceEEEEcCcccC-------CCCCCCccE
Confidence 5789999999999999988775334799999999998 99999999988877899999998764 123578999
Q ss_pred EEECCCC-CCccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 235 MSVTPPY-TAVDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 235 V~~dPPy-~~~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
|++.--. +..+....++.+. ++|+|||++++...
T Consensus 190 V~s~~~~~h~~d~~~~l~e~~--rvLkpGG~lvi~~~ 224 (340)
T PLN02244 190 VWSMESGEHMPDKRKFVQELA--RVAAPGGRIIIVTW 224 (340)
T ss_pred EEECCchhccCCHHHHHHHHH--HHcCCCcEEEEEEe
Confidence 9985332 2335556666664 58999999998653
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.7e-11 Score=109.68 Aligned_cols=110 Identities=20% Similarity=0.206 Sum_probs=92.4
Q ss_pred CCCCeEEEECCCcchHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEE-ecHHHHHHHHhhhcCCCC
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHT-VRVETFLERAEQFVGKDG 230 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~-G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~-gD~~~~l~~~~~~~~~~~ 230 (317)
...+++|++|++.|.-++.++.. . ..+++.||.|++.+ +.|++|++..|+.++++++. +|+.+.+... ..+
T Consensus 58 ~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~-~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~-----~~~ 131 (219)
T COG4122 58 SGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERA-EIARENLAEAGVDDRIELLLGGDALDVLSRL-----LDG 131 (219)
T ss_pred cCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHH-HHHHHHHHHcCCcceEEEEecCcHHHHHHhc-----cCC
Confidence 35789999999999999986652 2 35899999999998 99999999999999999998 5998887642 258
Q ss_pred CccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCCCC
Q 021116 231 PFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRT 273 (317)
Q Consensus 231 ~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~~ 273 (317)
+||+||+|. .+.+|.+.++.+. ++|+|||+|++..-...
T Consensus 132 ~fDliFIDa--dK~~yp~~le~~~--~lLr~GGliv~DNvl~~ 170 (219)
T COG4122 132 SFDLVFIDA--DKADYPEYLERAL--PLLRPGGLIVADNVLFG 170 (219)
T ss_pred CccEEEEeC--ChhhCHHHHHHHH--HHhCCCcEEEEeecccC
Confidence 999999995 6678888888876 48999999999766443
|
|
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.3e-11 Score=120.26 Aligned_cols=124 Identities=19% Similarity=0.185 Sum_probs=91.9
Q ss_pred CCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCC------------------------------
Q 021116 130 RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCS------------------------------ 179 (317)
Q Consensus 130 rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~------------------------------ 179 (317)
-|..+.++.++.-...- .++..++|+.||||++.|||+-++..
T Consensus 173 ApLketLAaAil~lagw-------~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~ 245 (381)
T COG0116 173 APLKETLAAAILLLAGW-------KPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAE 245 (381)
T ss_pred CCchHHHHHHHHHHcCC-------CCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHH
Confidence 45667677666544332 35679999999999999999876631
Q ss_pred ----------EEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCc-----
Q 021116 180 ----------EVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAV----- 244 (317)
Q Consensus 180 ----------~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~----- 244 (317)
.++++|+|++++ +.|+.|++..|+.+.|+|.++|+.++-.. -+.+|+||+||||+..
T Consensus 246 ~~a~~~~~~~~~~G~Did~r~i-~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~-------~~~~gvvI~NPPYGeRlg~~~ 317 (381)
T COG0116 246 ERARRGKELPIIYGSDIDPRHI-EGAKANARAAGVGDLIEFKQADATDLKEP-------LEEYGVVISNPPYGERLGSEA 317 (381)
T ss_pred HHHhhcCccceEEEecCCHHHH-HHHHHHHHhcCCCceEEEEEcchhhCCCC-------CCcCCEEEeCCCcchhcCChh
Confidence 378999999999 99999999999999999999999876421 1589999999999853
Q ss_pred ----cHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 245 ----DYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 245 ----~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
.|..+.+.+. +.++--+..++..+
T Consensus 318 ~v~~LY~~fg~~lk--~~~~~ws~~v~tt~ 345 (381)
T COG0116 318 LVAKLYREFGRTLK--RLLAGWSRYVFTTS 345 (381)
T ss_pred hHHHHHHHHHHHHH--HHhcCCceEEEEcc
Confidence 2344444443 35565555555544
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.9e-11 Score=108.28 Aligned_cols=100 Identities=18% Similarity=0.267 Sum_probs=78.5
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccE
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDl 234 (317)
++.+|||+|||+|..++.++++|. +|+++|+++.++ +.++++++..++.+ ++++..|+.++. ..+.||+
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~g~-~V~gvD~S~~~i-~~a~~~~~~~~~~~-v~~~~~d~~~~~--------~~~~fD~ 98 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAANGF-DVTAWDKNPMSI-ANLERIKAAENLDN-LHTAVVDLNNLT--------FDGEYDF 98 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHCCC-EEEEEeCCHHHH-HHHHHHHHHcCCCc-ceEEecChhhCC--------cCCCcCE
Confidence 568999999999999999988876 799999999999 99999999888854 888889986542 1357999
Q ss_pred EEECCCCCCc---cHHHHHHHHHHcCCcCCCeEEEE
Q 021116 235 MSVTPPYTAV---DYEVLMAQISKSALVGKDSFIVV 267 (317)
Q Consensus 235 V~~dPPy~~~---~~~~~l~~L~~~~lLkpgG~ivv 267 (317)
|++...++.- .....++.+. ++|+|||++++
T Consensus 99 I~~~~~~~~~~~~~~~~~l~~i~--~~LkpgG~~~~ 132 (197)
T PRK11207 99 ILSTVVLMFLEAKTIPGLIANMQ--RCTKPGGYNLI 132 (197)
T ss_pred EEEecchhhCCHHHHHHHHHHHH--HHcCCCcEEEE
Confidence 9987554321 3445555554 58999999654
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.5e-11 Score=116.93 Aligned_cols=108 Identities=14% Similarity=0.084 Sum_probs=84.7
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
.++.+|||+|||+|.++..++..|+ +|++||.+++++ +.|+++++..+..++++++++|+.++.. .+++||
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~g~-~V~GID~s~~~i-~~Ar~~~~~~~~~~~i~~~~~dae~l~~-------~~~~FD 200 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARMGA-TVTGVDAVDKNV-KIARLHADMDPVTSTIEYLCTTAEKLAD-------EGRKFD 200 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHcCC-EEEEEeCCHHHH-HHHHHHHHhcCcccceeEEecCHHHhhh-------ccCCCC
Confidence 3577999999999999988877765 799999999999 9999988776655579999999877531 246899
Q ss_pred EEEECCC-CCCccHHHHHHHHHHcCCcCCCeEEEEEeCCC
Q 021116 234 YMSVTPP-YTAVDYEVLMAQISKSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 234 lV~~dPP-y~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~ 272 (317)
+|++.-- ++..+....++.+. ++|+|||.+++....+
T Consensus 201 ~Vi~~~vLeHv~d~~~~L~~l~--r~LkPGG~liist~nr 238 (322)
T PLN02396 201 AVLSLEVIEHVANPAEFCKSLS--ALTIPNGATVLSTINR 238 (322)
T ss_pred EEEEhhHHHhcCCHHHHHHHHH--HHcCCCcEEEEEECCc
Confidence 9998432 22335567777776 4899999999887543
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=3e-11 Score=109.51 Aligned_cols=102 Identities=15% Similarity=0.116 Sum_probs=78.2
Q ss_pred CCCCeEEEECCCcchHHHHHHHc-CC-CEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCC
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISR-GC-SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGP 231 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~-Ga-~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~ 231 (317)
.++.+|||+|||||.++..++.. +. .+|+++|++++++ +.+++|++.+|+. +++++.+|+.+... ....
T Consensus 75 ~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~-~~a~~~l~~~g~~-~v~~~~gd~~~~~~-------~~~~ 145 (212)
T PRK13942 75 KEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELA-EKAKKTLKKLGYD-NVEVIVGDGTLGYE-------ENAP 145 (212)
T ss_pred CCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHH-HHHHHHHHHcCCC-CeEEEECCcccCCC-------cCCC
Confidence 46889999999999999876654 32 4899999999998 9999999999985 59999999865431 2368
Q ss_pred ccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCC
Q 021116 232 FDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPL 271 (317)
Q Consensus 232 fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~ 271 (317)
||+|+++--. .+....+.+ .|+|||++++....
T Consensus 146 fD~I~~~~~~-----~~~~~~l~~--~LkpgG~lvi~~~~ 178 (212)
T PRK13942 146 YDRIYVTAAG-----PDIPKPLIE--QLKDGGIMVIPVGS 178 (212)
T ss_pred cCEEEECCCc-----ccchHHHHH--hhCCCcEEEEEEcC
Confidence 9999997421 122233332 68999999987653
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.29 E-value=5.6e-11 Score=106.09 Aligned_cols=111 Identities=12% Similarity=0.123 Sum_probs=86.2
Q ss_pred CCCeEEEECCCcchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
...++||+|||+|.+++.++.+. ...|+++|+++.++ +.|++|++..++. +++++++|+.+...... ..+.+|
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l-~~a~~~~~~~~l~-ni~~i~~d~~~~~~~~~----~~~~~d 89 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIV-LAANNKANKLGLK-NLHVLCGDANELLDKFF----PDGSLS 89 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHH-HHHHHHHHHhCCC-CEEEEccCHHHHHHhhC----CCCcee
Confidence 35699999999999999887753 34799999999999 9999999999886 59999999988654321 235899
Q ss_pred EEEECCC--CCCc-------cHHHHHHHHHHcCCcCCCeEEEEEeCCCC
Q 021116 234 YMSVTPP--YTAV-------DYEVLMAQISKSALVGKDSFIVVEYPLRT 273 (317)
Q Consensus 234 lV~~dPP--y~~~-------~~~~~l~~L~~~~lLkpgG~ivv~~~~~~ 273 (317)
.|+++.| +.+. ..+..++.+. ++|+|||.+++.+....
T Consensus 90 ~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~--r~LkpgG~l~~~td~~~ 136 (194)
T TIGR00091 90 KVFLNFPDPWPKKRHNKRRITQPHFLKEYA--NVLKKGGVIHFKTDNEP 136 (194)
T ss_pred EEEEECCCcCCCCCccccccCCHHHHHHHH--HHhCCCCEEEEEeCCHH
Confidence 9999864 3221 1245666665 58999999999877553
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.7e-11 Score=110.39 Aligned_cols=104 Identities=7% Similarity=0.033 Sum_probs=80.9
Q ss_pred CCCeEEEECCCcchHHHHHHHc---CCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCC
Q 021116 155 RPGRWLDLYSGTGSVGIEAISR---GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGP 231 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~---Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~ 231 (317)
++.+|||+|||+|..++.++.. ...+|+++|+++.++ +.|++|++.++..++++++++|+.+.. .+.
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml-~~A~~~~~~~~~~~~v~~~~~d~~~~~---------~~~ 125 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMI-ERCRRHIDAYKAPTPVDVIEGDIRDIA---------IEN 125 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHH-HHHHHHHHhcCCCCCeEEEeCChhhCC---------CCC
Confidence 5789999999999999876652 235899999999999 999999998888778999999987642 246
Q ss_pred ccEEEECCCCCCc---cHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 232 FDYMSVTPPYTAV---DYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 232 fDlV~~dPPy~~~---~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
+|+|+++...+.- ....+++.+. +.|+|||.+++...
T Consensus 126 ~D~vv~~~~l~~l~~~~~~~~l~~i~--~~LkpGG~l~l~e~ 165 (247)
T PRK15451 126 ASMVVLNFTLQFLEPSERQALLDKIY--QGLNPGGALVLSEK 165 (247)
T ss_pred CCEEehhhHHHhCCHHHHHHHHHHHH--HhcCCCCEEEEEEe
Confidence 8999987544321 1234555554 58999999988754
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.4e-11 Score=120.16 Aligned_cols=84 Identities=18% Similarity=0.155 Sum_probs=68.1
Q ss_pred CCCCeEEEECCCcchHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCC
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGP 231 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~--Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~ 231 (317)
.++.+|||+|||+|..++.++.. +..+|+++|+++.++ +.+++|++.+|+.+ ++++++|+.+..... +...++
T Consensus 251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl-~~~~~n~~r~g~~~-v~~~~~D~~~~~~~~---~~~~~~ 325 (434)
T PRK14901 251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRL-KKLQENAQRLGLKS-IKILAADSRNLLELK---PQWRGY 325 (434)
T ss_pred CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHH-HHHHHHHHHcCCCe-EEEEeCChhhccccc---cccccc
Confidence 36789999999999999887764 235899999999999 99999999999965 999999988653210 001357
Q ss_pred ccEEEECCCCC
Q 021116 232 FDYMSVTPPYT 242 (317)
Q Consensus 232 fDlV~~dPPy~ 242 (317)
||.|++|||+.
T Consensus 326 fD~Vl~DaPCS 336 (434)
T PRK14901 326 FDRILLDAPCS 336 (434)
T ss_pred CCEEEEeCCCC
Confidence 99999999974
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.1e-11 Score=120.78 Aligned_cols=108 Identities=12% Similarity=0.075 Sum_probs=81.3
Q ss_pred CCCCeEEEECCCcchHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCC
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGP 231 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~--Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~ 231 (317)
.++.+|||+|||+|..++.++.. +..+|+++|+++.++ +.+++|++.+|+. +++++++|+.++. ...+
T Consensus 249 ~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l-~~~~~~~~~~g~~-~v~~~~~Da~~~~--------~~~~ 318 (445)
T PRK14904 249 QPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKL-EKIRSHASALGIT-IIETIEGDARSFS--------PEEQ 318 (445)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHH-HHHHHHHHHhCCC-eEEEEeCcccccc--------cCCC
Confidence 35789999999999999876652 235899999999999 9999999999985 5899999987653 1357
Q ss_pred ccEEEECCCCCC-ccH-----------HH--------HHHHHH-HcCCcCCCeEEEEEeCC
Q 021116 232 FDYMSVTPPYTA-VDY-----------EV--------LMAQIS-KSALVGKDSFIVVEYPL 271 (317)
Q Consensus 232 fDlV~~dPPy~~-~~~-----------~~--------~l~~L~-~~~lLkpgG~ivv~~~~ 271 (317)
||.|++|||+.. +.+ .+ +.+.|. ..++|+|||+++.++-+
T Consensus 319 fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs 379 (445)
T PRK14904 319 PDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCS 379 (445)
T ss_pred CCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 999999999843 110 01 111222 24689999999876543
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.5e-11 Score=113.42 Aligned_cols=74 Identities=19% Similarity=0.219 Sum_probs=60.5
Q ss_pred CCCeEEEECCCcchHHHHHHHc----CCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCC
Q 021116 155 RPGRWLDLYSGTGSVGIEAISR----GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDG 230 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~----Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~ 230 (317)
.+.+|||+|||||.+++.++.+ ...+|++||+|+.++ ++|++|.. ++.++++|+.++. . .+
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al-~~Ar~n~~------~~~~~~~D~~~~~--~------~~ 113 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYY-KLGKRIVP------EATWINADALTTE--F------DT 113 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHH-HHHHhhcc------CCEEEEcchhccc--c------cC
Confidence 3679999999999999987753 234899999999999 99998853 2678999987542 1 35
Q ss_pred CccEEEECCCCCC
Q 021116 231 PFDYMSVTPPYTA 243 (317)
Q Consensus 231 ~fDlV~~dPPy~~ 243 (317)
+||+||+||||..
T Consensus 114 ~FDlIIsNPPY~~ 126 (241)
T PHA03412 114 LFDMAISNPPFGK 126 (241)
T ss_pred CccEEEECCCCCC
Confidence 8999999999984
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.4e-11 Score=119.89 Aligned_cols=111 Identities=13% Similarity=0.070 Sum_probs=79.3
Q ss_pred CCCCeEEEECCCcchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF 232 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~-Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~f 232 (317)
.++.+|||+|||+|..++.++.. +..+|+++|+++.++ +.+++|++.+|+..++++..+|........ ...+|
T Consensus 237 ~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l-~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~-----~~~~f 310 (426)
T TIGR00563 237 QNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRL-KRVYENLKRLGLTIKAETKDGDGRGPSQWA-----ENEQF 310 (426)
T ss_pred CCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHH-HHHHHHHHHcCCCeEEEEeccccccccccc-----ccccc
Confidence 46789999999999999987764 445899999999999 999999999998644455777765322100 13679
Q ss_pred cEEEECCCCCC-ccH------------HH-------HHHHHH-HcCCcCCCeEEEEEeC
Q 021116 233 DYMSVTPPYTA-VDY------------EV-------LMAQIS-KSALVGKDSFIVVEYP 270 (317)
Q Consensus 233 DlV~~dPPy~~-~~~------------~~-------~l~~L~-~~~lLkpgG~ivv~~~ 270 (317)
|.|++|||+.. +.+ ++ +.+.|. ..++|+|||+++.++-
T Consensus 311 D~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystc 369 (426)
T TIGR00563 311 DRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATC 369 (426)
T ss_pred CEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 99999999863 211 00 112222 2468999999886643
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.9e-11 Score=125.63 Aligned_cols=157 Identities=18% Similarity=0.146 Sum_probs=102.0
Q ss_pred CCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcC--------------------------------
Q 021116 130 RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRG-------------------------------- 177 (317)
Q Consensus 130 rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~G-------------------------------- 177 (317)
-|..+.++.++.....- ...+..++|++||+|++.|||+..+
T Consensus 171 Apl~etlAaa~l~~a~w------~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a 244 (702)
T PRK11783 171 APLKENLAAAILLRSGW------PQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEA 244 (702)
T ss_pred CCCcHHHHHHHHHHcCC------CCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHH
Confidence 34556677777644321 0246899999999999999987531
Q ss_pred -----------CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCcc-
Q 021116 178 -----------CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVD- 245 (317)
Q Consensus 178 -----------a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~- 245 (317)
..+++|+|+|+.++ +.|++|++.+|+.+.+++.++|+.++.... ..+.||+|++||||+...
T Consensus 245 ~~~~~~~~~~~~~~i~G~Did~~av-~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~-----~~~~~d~IvtNPPYg~r~~ 318 (702)
T PRK11783 245 QERARAGLAELPSKFYGSDIDPRVI-QAARKNARRAGVAELITFEVKDVADLKNPL-----PKGPTGLVISNPPYGERLG 318 (702)
T ss_pred HHHHhhcccccCceEEEEECCHHHH-HHHHHHHHHcCCCcceEEEeCChhhccccc-----ccCCCCEEEECCCCcCccC
Confidence 12599999999999 999999999999888999999988753211 124699999999997531
Q ss_pred --------HHHHHHHHHHcCCcCCCeEEEEEeCCCCCccccCCCeEEEEE--eecCceEEEEEeechh
Q 021116 246 --------YEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD--RRFGRTHLAIYGPDWA 303 (317)
Q Consensus 246 --------~~~~l~~L~~~~lLkpgG~ivv~~~~~~~l~~~~~~~~~~~~--r~yG~~~l~~~~p~~~ 303 (317)
|..+-+.+. ...+|+.+++-.+.. .+... -++...+. -..|.....+|.....
T Consensus 319 ~~~~l~~lY~~lg~~lk---~~~~g~~~~llt~~~-~l~~~-~~l~~~~~~~l~nG~l~~~l~~~~~~ 381 (702)
T PRK11783 319 EEPALIALYSQLGRRLK---QQFGGWNAALFSSSP-ELLSC-LGLRADKQYKLKNGALECVLKNYTIA 381 (702)
T ss_pred chHHHHHHHHHHHHHHH---HhCCCCeEEEEeCCH-HHHHH-hCCCCCCCeeeecCceEEEEEEEEcc
Confidence 222223332 234787777666533 22211 12221111 2246666666665443
|
|
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.26 E-value=9.8e-12 Score=106.23 Aligned_cols=102 Identities=18% Similarity=0.237 Sum_probs=81.9
Q ss_pred CCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceE
Q 021116 130 RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSS 209 (317)
Q Consensus 130 rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ 209 (317)
.||...++..++..+-+..+ +.+|+.++|||||+|.+.+.+.-.+...|+++|++|+++ +.+.+|++.+.+. +.
T Consensus 26 Y~T~p~iAasM~~~Ih~Tyg---diEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeAL-EIf~rNaeEfEvq--id 99 (185)
T KOG3420|consen 26 YPTRPHIAASMLYTIHNTYG---DIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEAL-EIFTRNAEEFEVQ--ID 99 (185)
T ss_pred CCCcHHHHHHHHHHHHhhhc---cccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHH-HHHhhchHHhhhh--hh
Confidence 45666667777766644322 368999999999999999866656778899999999999 9999999999875 68
Q ss_pred EEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCc
Q 021116 210 IHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAV 244 (317)
Q Consensus 210 ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~ 244 (317)
++++|+.+... ..+.||.+++||||+..
T Consensus 100 lLqcdildle~-------~~g~fDtaviNppFGTk 127 (185)
T KOG3420|consen 100 LLQCDILDLEL-------KGGIFDTAVINPPFGTK 127 (185)
T ss_pred eeeeeccchhc-------cCCeEeeEEecCCCCcc
Confidence 99999877542 24789999999999853
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=8.6e-11 Score=111.15 Aligned_cols=107 Identities=19% Similarity=0.224 Sum_probs=83.4
Q ss_pred CCCeEEEECCCcchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHhHHHhC--C--CCceEEEEecHHHHHHHHhhhcCCC
Q 021116 155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTG--F--LDVSSIHTVRVETFLERAEQFVGKD 229 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~-Ga~~V~aVDin~~al~~~ar~N~~~~g--l--~~~v~ii~gD~~~~l~~~~~~~~~~ 229 (317)
..++|||+|||+|.++.++++. +..+|++||+|+.++ +.|++++...+ . +++++++.+|+.+++... .
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv-~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~------~ 148 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVV-EVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAET------E 148 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHH-HHHHHHhHHhccccccCCceEEEECchHHHHhhC------C
Confidence 5689999999999999998886 677899999999999 99999986542 2 457999999999987542 4
Q ss_pred CCccEEEECC--CCCCc--cH-HHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 230 GPFDYMSVTP--PYTAV--DY-EVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 230 ~~fDlV~~dP--Py~~~--~~-~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
++||+|++|. |+... .+ .+.++.+. +.|+|||++++...
T Consensus 149 ~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~--~~L~~gGvlv~~~~ 192 (283)
T PRK00811 149 NSFDVIIVDSTDPVGPAEGLFTKEFYENCK--RALKEDGIFVAQSG 192 (283)
T ss_pred CcccEEEECCCCCCCchhhhhHHHHHHHHH--HhcCCCcEEEEeCC
Confidence 6899999984 44321 11 34444444 58999999998654
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.9e-10 Score=106.95 Aligned_cols=111 Identities=12% Similarity=0.094 Sum_probs=90.0
Q ss_pred CCCeEEEECCCcchHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCc
Q 021116 155 RPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF 232 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~-G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~f 232 (317)
+.++||++|+++|.-++.+++. + ..+|+.+|.+++.+ +.|++|++..|+.++++++.||+.+.+..+.......++|
T Consensus 79 ~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~-~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~f 157 (247)
T PLN02589 79 NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENY-ELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTF 157 (247)
T ss_pred CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHH-HHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcc
Confidence 5679999999999999976642 2 34899999999998 9999999999999999999999999987653100012589
Q ss_pred cEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 233 DYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 233 DlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
|+||+|. .+..|...++.+. ++|++||+|++..-
T Consensus 158 D~iFiDa--dK~~Y~~y~~~~l--~ll~~GGviv~DNv 191 (247)
T PLN02589 158 DFIFVDA--DKDNYINYHKRLI--DLVKVGGVIGYDNT 191 (247)
T ss_pred cEEEecC--CHHHhHHHHHHHH--HhcCCCeEEEEcCC
Confidence 9999996 4567888887765 48999999998654
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.7e-11 Score=110.41 Aligned_cols=108 Identities=19% Similarity=0.155 Sum_probs=85.9
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
..+.+|||+|||-|.++..+++.|+ .|+++|++++++ +.|+..+...|+. +++.+..+++.... .++||
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~Ga-~VtgiD~se~~I-~~Ak~ha~e~gv~--i~y~~~~~edl~~~-------~~~FD 126 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLGA-SVTGIDASEKPI-EVAKLHALESGVN--IDYRQATVEDLASA-------GGQFD 126 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCCC-eeEEecCChHHH-HHHHHhhhhcccc--ccchhhhHHHHHhc-------CCCcc
Confidence 3689999999999999999999995 699999999999 9999999999885 67788888776532 37999
Q ss_pred EEEECCC-CCCccHHHHHHHHHHcCCcCCCeEEEEEeCCCCC
Q 021116 234 YMSVTPP-YTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTD 274 (317)
Q Consensus 234 lV~~dPP-y~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~~~ 274 (317)
+|++.=- -+..+.+..+..+. ++++|||++++++..++.
T Consensus 127 vV~cmEVlEHv~dp~~~~~~c~--~lvkP~G~lf~STinrt~ 166 (243)
T COG2227 127 VVTCMEVLEHVPDPESFLRACA--KLVKPGGILFLSTINRTL 166 (243)
T ss_pred EEEEhhHHHccCCHHHHHHHHH--HHcCCCcEEEEeccccCH
Confidence 9997421 12234455666655 489999999999876654
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=4e-11 Score=112.80 Aligned_cols=103 Identities=21% Similarity=0.295 Sum_probs=76.1
Q ss_pred CCCeEEEECCCcchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
...+|||+|||+|.+++.++.+. ..+|+++|+|+.++ +.+++|+. +++++++|+.++.. ..+||
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al-~~Ar~n~~------~v~~v~~D~~e~~~--------~~kFD 128 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFA-RIGKRLLP------EAEWITSDVFEFES--------NEKFD 128 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHhCc------CCEEEECchhhhcc--------cCCCc
Confidence 35789999999999999877653 45899999999999 99998742 47899999987641 36799
Q ss_pred EEEECCCCCCcc---------HH------H---HHHHHH-HcCCcCCCeEEEEEeCCC
Q 021116 234 YMSVTPPYTAVD---------YE------V---LMAQIS-KSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 234 lV~~dPPy~~~~---------~~------~---~l~~L~-~~~lLkpgG~ivv~~~~~ 272 (317)
+|++||||.... +. + +.+.+. ...+|+|+|.+++.+...
T Consensus 129 lIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~ 186 (279)
T PHA03411 129 VVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGR 186 (279)
T ss_pred EEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEecc
Confidence 999999997421 10 1 112222 236899999887766543
|
|
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.8e-11 Score=110.59 Aligned_cols=78 Identities=21% Similarity=0.252 Sum_probs=69.1
Q ss_pred eEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHh------C--CCCceEEEEecHHHHHHHHhhhcCCC
Q 021116 158 RWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWT------G--FLDVSSIHTVRVETFLERAEQFVGKD 229 (317)
Q Consensus 158 rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~------g--l~~~v~ii~gD~~~~l~~~~~~~~~~ 229 (317)
+|||++||+|..+++++++|+. |++||.|+.+. .++++|+++. + +..+++++++|+.+++... .
T Consensus 91 ~VLD~TAGlG~Da~~las~G~~-V~~vEr~p~va-alL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~------~ 162 (250)
T PRK10742 91 DVVDATAGLGRDAFVLASVGCR-VRMLERNPVVA-ALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDI------T 162 (250)
T ss_pred EEEECCCCccHHHHHHHHcCCE-EEEEECCHHHH-HHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhC------C
Confidence 8999999999999999999986 99999999998 9999999985 3 2256999999999998764 2
Q ss_pred CCccEEEECCCCCC
Q 021116 230 GPFDYMSVTPPYTA 243 (317)
Q Consensus 230 ~~fDlV~~dPPy~~ 243 (317)
..||+|++||||..
T Consensus 163 ~~fDVVYlDPMfp~ 176 (250)
T PRK10742 163 PRPQVVYLDPMFPH 176 (250)
T ss_pred CCCcEEEECCCCCC
Confidence 57999999999964
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=2e-10 Score=107.60 Aligned_cols=106 Identities=16% Similarity=0.152 Sum_probs=83.1
Q ss_pred CCCeEEEECCCcchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~-Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
+..+|||+|||+|.++..++.. +..+|++||+|++++ +.|++++...+..++++++.+|+.+++... .++||
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi-~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~------~~~yD 138 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVI-AVARNHFELPENGERFEVIEADGAEYIAVH------RHSTD 138 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHH-HHHHHHcCCCCCCCceEEEECCHHHHHHhC------CCCCC
Confidence 4679999999999999877654 445799999999999 999999876655567999999999987643 36899
Q ss_pred EEEECCCCCCc------cHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 234 YMSVTPPYTAV------DYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 234 lV~~dPPy~~~------~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
+|++|. |... ...+.++.+. +.|+|||++++...
T Consensus 139 ~I~~D~-~~~~~~~~~l~t~efl~~~~--~~L~pgGvlvin~~ 178 (262)
T PRK04457 139 VILVDG-FDGEGIIDALCTQPFFDDCR--NALSSDGIFVVNLW 178 (262)
T ss_pred EEEEeC-CCCCCCccccCcHHHHHHHH--HhcCCCcEEEEEcC
Confidence 999985 3221 1245666654 48999999998654
|
|
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.9e-10 Score=107.38 Aligned_cols=108 Identities=16% Similarity=0.082 Sum_probs=78.9
Q ss_pred CCCCeEEEECCCcchHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHhHHH--hCCCCceEEEEecHHHHHHHHhhhcCCC
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEW--TGFLDVSSIHTVRVETFLERAEQFVGKD 229 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~-G-a~~V~aVDin~~al~~~ar~N~~~--~gl~~~v~ii~gD~~~~l~~~~~~~~~~ 229 (317)
.++.+|||+|||||.++..++.. + ..+|+++|+++.|+ +.|+++... .+..++++++++|+.++ +..+
T Consensus 72 ~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml-~~A~~r~~~~~~~~~~~i~~~~~d~~~l-------p~~~ 143 (261)
T PLN02233 72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQL-AVAASRQELKAKSCYKNIEWIEGDATDL-------PFDD 143 (261)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHhhhhhhccCCCeEEEEcccccC-------CCCC
Confidence 35789999999999999877664 3 24799999999999 999876542 22234689999998764 2345
Q ss_pred CCccEEEECCCCC-CccHHHHHHHHHHcCCcCCCeEEEEEeCC
Q 021116 230 GPFDYMSVTPPYT-AVDYEVLMAQISKSALVGKDSFIVVEYPL 271 (317)
Q Consensus 230 ~~fDlV~~dPPy~-~~~~~~~l~~L~~~~lLkpgG~ivv~~~~ 271 (317)
++||+|++.--.+ ..+....++.+. ++|+|||++++..-.
T Consensus 144 ~sfD~V~~~~~l~~~~d~~~~l~ei~--rvLkpGG~l~i~d~~ 184 (261)
T PLN02233 144 CYFDAITMGYGLRNVVDRLKAMQEMY--RVLKPGSRVSILDFN 184 (261)
T ss_pred CCEeEEEEecccccCCCHHHHHHHHH--HHcCcCcEEEEEECC
Confidence 7899999863322 224556666665 589999998876543
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=1e-10 Score=110.44 Aligned_cols=101 Identities=14% Similarity=0.195 Sum_probs=79.0
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccE
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDl 234 (317)
++.+|||+|||+|..++.++..|. +|+++|+|+.++ +.+++|++.+++ ++++...|+.... ..++||+
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~g~-~V~avD~s~~ai-~~~~~~~~~~~l--~v~~~~~D~~~~~--------~~~~fD~ 187 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALLGF-DVTAVDINQQSL-ENLQEIAEKENL--NIRTGLYDINSAS--------IQEEYDF 187 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHCCC-EEEEEECCHHHH-HHHHHHHHHcCC--ceEEEEechhccc--------ccCCccE
Confidence 456999999999999999888885 799999999999 999999998888 3888888876532 1368999
Q ss_pred EEECCCCCCc---cHHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 235 MSVTPPYTAV---DYEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 235 V~~dPPy~~~---~~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
|++...++.- .....++.+. +.|+|||++++.+
T Consensus 188 I~~~~vl~~l~~~~~~~~l~~~~--~~LkpgG~~l~v~ 223 (287)
T PRK12335 188 ILSTVVLMFLNRERIPAIIKNMQ--EHTNPGGYNLIVC 223 (287)
T ss_pred EEEcchhhhCCHHHHHHHHHHHH--HhcCCCcEEEEEE
Confidence 9987654321 3455565554 5899999966543
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.1e-11 Score=113.24 Aligned_cols=109 Identities=24% Similarity=0.234 Sum_probs=87.2
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCC-CceEEEEecHHHHHHHHhhhcCCCCCc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFL-DVSSIHTVRVETFLERAEQFVGKDGPF 232 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~-~~v~ii~gD~~~~l~~~~~~~~~~~~f 232 (317)
.++.+|||-|.|-|..+++++.+|+.+|+.||.||..+ ++|..|-=.-++. ..++++.||+.++.+.+ .+.+|
T Consensus 133 ~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VL-eLa~lNPwSr~l~~~~i~iilGD~~e~V~~~-----~D~sf 206 (287)
T COG2521 133 KRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVL-ELAKLNPWSRELFEIAIKIILGDAYEVVKDF-----DDESF 206 (287)
T ss_pred ccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeE-EeeccCCCCccccccccEEecccHHHHHhcC-----Ccccc
Confidence 46999999999999999999999999999999999999 9998885433433 34799999999999876 46889
Q ss_pred cEEEECCCCCC--c-cH-HHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 233 DYMSVTPPYTA--V-DY-EVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 233 DlV~~dPPy~~--~-~~-~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
|+|+-|||... + .| ++.-+.+. |+|++||.++=...
T Consensus 207 DaIiHDPPRfS~AgeLYseefY~El~--RiLkrgGrlFHYvG 246 (287)
T COG2521 207 DAIIHDPPRFSLAGELYSEEFYRELY--RILKRGGRLFHYVG 246 (287)
T ss_pred ceEeeCCCccchhhhHhHHHHHHHHH--HHcCcCCcEEEEeC
Confidence 99999999643 1 23 34445554 68999999874433
|
|
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.7e-10 Score=111.12 Aligned_cols=105 Identities=14% Similarity=0.073 Sum_probs=80.0
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
..+++|||+|||+|.+++.++..|+.+|+++|.++.++ ..++...+..+...+++++.+|+.+.. . .+.||
T Consensus 121 l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l-~q~~a~~~~~~~~~~i~~~~~d~e~lp-------~-~~~FD 191 (322)
T PRK15068 121 LKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFL-CQFEAVRKLLGNDQRAHLLPLGIEQLP-------A-LKAFD 191 (322)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHH-HHHHHHHHhcCCCCCeEEEeCCHHHCC-------C-cCCcC
Confidence 46889999999999999999888887899999999987 554443333333446899999987652 1 46899
Q ss_pred EEEEC-CCCCCccHHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 234 YMSVT-PPYTAVDYEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 234 lV~~d-PPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
+|++. --|+..+....++.+. +.|+|||.++++.
T Consensus 192 ~V~s~~vl~H~~dp~~~L~~l~--~~LkpGG~lvl~~ 226 (322)
T PRK15068 192 TVFSMGVLYHRRSPLDHLKQLK--DQLVPGGELVLET 226 (322)
T ss_pred EEEECChhhccCCHHHHHHHHH--HhcCCCcEEEEEE
Confidence 99984 3344455667777765 4899999999875
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.21 E-value=9e-11 Score=110.65 Aligned_cols=103 Identities=20% Similarity=0.283 Sum_probs=78.1
Q ss_pred CCCCeEEEECCCcchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF 232 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~-Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~f 232 (317)
.+|.+|||+|||.|.+++.++++ |+ +|++|.++++.. +.+++.++..|+.+++++...|..++. ++|
T Consensus 61 ~~G~~vLDiGcGwG~~~~~~a~~~g~-~v~gitlS~~Q~-~~a~~~~~~~gl~~~v~v~~~D~~~~~----------~~f 128 (273)
T PF02353_consen 61 KPGDRVLDIGCGWGGLAIYAAERYGC-HVTGITLSEEQA-EYARERIREAGLEDRVEVRLQDYRDLP----------GKF 128 (273)
T ss_dssp -TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHH-HHHHHHHHCSTSSSTEEEEES-GGG-------------S-
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCc-EEEEEECCHHHH-HHHHHHHHhcCCCCceEEEEeeccccC----------CCC
Confidence 47899999999999999999987 76 799999999998 999999999999999999999987652 589
Q ss_pred cEEEECCCC-CC--ccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 233 DYMSVTPPY-TA--VDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 233 DlV~~dPPy-~~--~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
|.|++=-.+ +. ..+...++.+. ++|+|||++++...
T Consensus 129 D~IvSi~~~Ehvg~~~~~~~f~~~~--~~LkpgG~~~lq~i 167 (273)
T PF02353_consen 129 DRIVSIEMFEHVGRKNYPAFFRKIS--RLLKPGGRLVLQTI 167 (273)
T ss_dssp SEEEEESEGGGTCGGGHHHHHHHHH--HHSETTEEEEEEEE
T ss_pred CEEEEEechhhcChhHHHHHHHHHH--HhcCCCcEEEEEec
Confidence 998863222 22 35778888776 48999999997654
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.7e-10 Score=103.52 Aligned_cols=104 Identities=10% Similarity=-0.019 Sum_probs=79.7
Q ss_pred CCCeEEEECCCcchHHHHHHHc---CCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCC
Q 021116 155 RPGRWLDLYSGTGSVGIEAISR---GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGP 231 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~---Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~ 231 (317)
++.+|||+|||+|..++.++++ ...+++++|+++.++ +.|+++++..+...+++++++|+.+.. .+.
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml-~~a~~~~~~~~~~~~v~~~~~d~~~~~---------~~~ 122 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMV-ERCRQHIAAYHSEIPVEILCNDIRHVE---------IKN 122 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHH-HHHHHHHHhcCCCCCeEEEECChhhCC---------CCC
Confidence 5679999999999999887764 234799999999999 999999987776667899999987652 246
Q ss_pred ccEEEECCCCCCc---cHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 232 FDYMSVTPPYTAV---DYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 232 fDlV~~dPPy~~~---~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
+|+|++.-..+.. +...+++.+. +.|+|||.+++...
T Consensus 123 ~d~v~~~~~l~~~~~~~~~~~l~~i~--~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 123 ASMVILNFTLQFLPPEDRIALLTKIY--EGLNPNGVLVLSEK 162 (239)
T ss_pred CCEEeeecchhhCCHHHHHHHHHHHH--HhcCCCeEEEEeec
Confidence 8998876443322 2244555554 58999999998765
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.6e-10 Score=104.00 Aligned_cols=100 Identities=16% Similarity=0.056 Sum_probs=78.0
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
.++.+|||+|||+|.++..++..+ .+|+++|+++.++ +.+++|++.+++.+ ++++.+|+.+.+. ..++||
T Consensus 77 ~~~~~VLeiG~GsG~~t~~la~~~-~~v~~vd~~~~~~-~~a~~~~~~~~~~~-v~~~~~d~~~~~~-------~~~~fD 146 (212)
T PRK00312 77 KPGDRVLEIGTGSGYQAAVLAHLV-RRVFSVERIKTLQ-WEAKRRLKQLGLHN-VSVRHGDGWKGWP-------AYAPFD 146 (212)
T ss_pred CCCCEEEEECCCccHHHHHHHHHh-CEEEEEeCCHHHH-HHHHHHHHHCCCCc-eEEEECCcccCCC-------cCCCcC
Confidence 357899999999999998666654 4799999999998 99999999998865 8999999754321 136799
Q ss_pred EEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 234 YMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 234 lV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
+|+++.+.. .+ .+.+. +.|+|||++++...
T Consensus 147 ~I~~~~~~~--~~---~~~l~--~~L~~gG~lv~~~~ 176 (212)
T PRK00312 147 RILVTAAAP--EI---PRALL--EQLKEGGILVAPVG 176 (212)
T ss_pred EEEEccCch--hh---hHHHH--HhcCCCcEEEEEEc
Confidence 999987542 22 23333 37999999998776
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.5e-10 Score=106.64 Aligned_cols=103 Identities=12% Similarity=0.088 Sum_probs=78.8
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccE
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDl 234 (317)
...+|||+|||+|.++..++..|. +|+++|+++.++ +.++++.. ...++++|+.+.. ..+++||+
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~~~D~s~~~l-~~a~~~~~------~~~~~~~d~~~~~-------~~~~~fD~ 106 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRERGS-QVTALDLSPPML-AQARQKDA------ADHYLAGDIESLP-------LATATFDL 106 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHcCC-eEEEEECCHHHH-HHHHhhCC------CCCEEEcCcccCc-------CCCCcEEE
Confidence 467999999999999987777764 799999999999 99988743 1357888986532 23468999
Q ss_pred EEECCCCCC-ccHHHHHHHHHHcCCcCCCeEEEEEeCCCCC
Q 021116 235 MSVTPPYTA-VDYEVLMAQISKSALVGKDSFIVVEYPLRTD 274 (317)
Q Consensus 235 V~~dPPy~~-~~~~~~l~~L~~~~lLkpgG~ivv~~~~~~~ 274 (317)
|+++.++.. .+....+..+. ++|+|||++++.......
T Consensus 107 V~s~~~l~~~~d~~~~l~~~~--~~Lk~gG~l~~~~~~~~~ 145 (251)
T PRK10258 107 AWSNLAVQWCGNLSTALRELY--RVVRPGGVVAFTTLVQGS 145 (251)
T ss_pred EEECchhhhcCCHHHHHHHHH--HHcCCCeEEEEEeCCCCc
Confidence 999876543 35666677665 589999999988755433
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.4e-10 Score=105.54 Aligned_cols=105 Identities=19% Similarity=0.127 Sum_probs=81.9
Q ss_pred CCCCeEEEECCCcchHHHHHHHc-CC-CEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCC
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISR-GC-SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGP 231 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~-Ga-~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~ 231 (317)
.++.+|||+|||+|..++.++.. |. .+|+++|+++.++ +.|++|.+.+++. +++++.+|+.+.. ..++.
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l-~~A~~~~~~~g~~-~v~~~~~d~~~l~-------~~~~~ 146 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEML-AKARANARKAGYT-NVEFRLGEIEALP-------VADNS 146 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHH-HHHHHHHHHcCCC-CEEEEEcchhhCC-------CCCCc
Confidence 36889999999999988766553 44 3799999999999 9999999998885 5899999986531 23468
Q ss_pred ccEEEECCCCCC-ccHHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 232 FDYMSVTPPYTA-VDYEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 232 fDlV~~dPPy~~-~~~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
||+|+.+.-++. .+....++.+. ++|+|||++++..
T Consensus 147 fD~Vi~~~v~~~~~d~~~~l~~~~--r~LkpGG~l~i~~ 183 (272)
T PRK11873 147 VDVIISNCVINLSPDKERVFKEAF--RVLKPGGRFAISD 183 (272)
T ss_pred eeEEEEcCcccCCCCHHHHHHHHH--HHcCCCcEEEEEE
Confidence 999998864432 34566677665 5899999999853
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.4e-11 Score=92.65 Aligned_cols=94 Identities=20% Similarity=0.235 Sum_probs=70.6
Q ss_pred EEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEECC
Q 021116 160 LDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTP 239 (317)
Q Consensus 160 LDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dP 239 (317)
||+|||+|..+..+++.+..+|+++|+++.++ +.++++....+ +.++.+|+.++ +..+++||+|++.-
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~-~~~~~~~~~~~----~~~~~~d~~~l-------~~~~~sfD~v~~~~ 68 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEML-EQARKRLKNEG----VSFRQGDAEDL-------PFPDNSFDVVFSNS 68 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHH-HHHHHHTTTST----EEEEESBTTSS-------SS-TT-EEEEEEES
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHH-HHHHhcccccC----chheeehHHhC-------cccccccccccccc
Confidence 89999999999988888666899999999998 99988776433 55889998765 33468999999864
Q ss_pred CCCC-ccHHHHHHHHHHcCCcCCCeEEEE
Q 021116 240 PYTA-VDYEVLMAQISKSALVGKDSFIVV 267 (317)
Q Consensus 240 Py~~-~~~~~~l~~L~~~~lLkpgG~ivv 267 (317)
-+.. .+....++.+. |+|+|||++++
T Consensus 69 ~~~~~~~~~~~l~e~~--rvLk~gG~l~~ 95 (95)
T PF08241_consen 69 VLHHLEDPEAALREIY--RVLKPGGRLVI 95 (95)
T ss_dssp HGGGSSHHHHHHHHHH--HHEEEEEEEEE
T ss_pred ceeeccCHHHHHHHHH--HHcCcCeEEeC
Confidence 3322 35566666665 68999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.9e-11 Score=115.19 Aligned_cols=129 Identities=17% Similarity=0.227 Sum_probs=98.7
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
.+++.|||+|||||.+++.+++.|+.+|++||.+.-+ +.|++.++.|++++.++++++.+++.. +| -++.|
T Consensus 59 f~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia--~~a~~iv~~N~~~~ii~vi~gkvEdi~-----LP--~eKVD 129 (346)
T KOG1499|consen 59 FKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA--DFARKIVKDNGLEDVITVIKGKVEDIE-----LP--VEKVD 129 (346)
T ss_pred cCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH--HHHHHHHHhcCccceEEEeecceEEEe-----cC--cccee
Confidence 5799999999999999999999999999999999865 799999999999999999999998872 11 47899
Q ss_pred EEEECCCCCCc-cHHHHHHHHH--HcCCcCCCeEEEEEeCCCCCccccCCCeEEEEEeecCceEEEEEee
Q 021116 234 YMSVTPPYTAV-DYEVLMAQIS--KSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDRRFGRTHLAIYGP 300 (317)
Q Consensus 234 lV~~dPPy~~~-~~~~~l~~L~--~~~lLkpgG~ivv~~~~~~~l~~~~~~~~~~~~r~yG~~~l~~~~p 300 (317)
+|+..-. +.. .++..++.+. .-+||+|||.++-... ++. +..+.+..|-+.++.||.+
T Consensus 130 iIvSEWM-Gy~Ll~EsMldsVl~ARdkwL~~~G~i~P~~a---~l~-----l~~i~d~~~~~~~i~fW~~ 190 (346)
T KOG1499|consen 130 IIVSEWM-GYFLLYESMLDSVLYARDKWLKEGGLIYPDRA---TLY-----LAAIEDDSYKDDKIGFWDD 190 (346)
T ss_pred EEeehhh-hHHHHHhhhhhhhhhhhhhccCCCceEccccc---eEE-----EEeccCchhhhhhcCcccc
Confidence 9999732 111 3566666653 2379999999986543 221 2234555666666776653
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.3e-10 Score=108.01 Aligned_cols=106 Identities=12% Similarity=0.049 Sum_probs=79.6
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
.++++|||+|||+|.++..++..|+.+|++||.++.++ ..++...+..+...++.+...++.+.. ....||
T Consensus 120 ~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml-~q~~~~~~~~~~~~~v~~~~~~ie~lp--------~~~~FD 190 (314)
T TIGR00452 120 LKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFL-CQFEAVRKLLDNDKRAILEPLGIEQLH--------ELYAFD 190 (314)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHH-HHHHHHHHHhccCCCeEEEECCHHHCC--------CCCCcC
Confidence 56899999999999999988888888899999999998 665443333333346788888876642 125799
Q ss_pred EEEECCC-CCCccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 234 YMSVTPP-YTAVDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 234 lV~~dPP-y~~~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
+|++.-- |+..+....+..+. +.|+|||.++++..
T Consensus 191 ~V~s~gvL~H~~dp~~~L~el~--r~LkpGG~Lvletl 226 (314)
T TIGR00452 191 TVFSMGVLYHRKSPLEHLKQLK--HQLVIKGELVLETL 226 (314)
T ss_pred EEEEcchhhccCCHHHHHHHHH--HhcCCCCEEEEEEE
Confidence 9998643 44445666777775 58999999998753
|
Known examples to date are restricted to the proteobacteria. |
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.2e-10 Score=106.03 Aligned_cols=98 Identities=17% Similarity=0.146 Sum_probs=76.1
Q ss_pred CCCCeEEEECCCcchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF 232 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~f 232 (317)
.++.+|||+|||+|.++..++.+. ..+|+++|+++.++ +.|+++ +++++++|+.++. ..++|
T Consensus 28 ~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~-~~a~~~--------~~~~~~~d~~~~~--------~~~~f 90 (255)
T PRK14103 28 ERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMV-AAARER--------GVDARTGDVRDWK--------PKPDT 90 (255)
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHH-HHHHhc--------CCcEEEcChhhCC--------CCCCc
Confidence 357899999999999998887762 34799999999999 888763 2678899987652 13689
Q ss_pred cEEEECCCCCC-ccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 233 DYMSVTPPYTA-VDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 233 DlV~~dPPy~~-~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
|+|+++..++. .+....+..+. +.|+|||++++...
T Consensus 91 D~v~~~~~l~~~~d~~~~l~~~~--~~LkpgG~l~~~~~ 127 (255)
T PRK14103 91 DVVVSNAALQWVPEHADLLVRWV--DELAPGSWIAVQVP 127 (255)
T ss_pred eEEEEehhhhhCCCHHHHHHHHH--HhCCCCcEEEEEcC
Confidence 99999876543 35566666664 58999999998754
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.4e-10 Score=103.80 Aligned_cols=99 Identities=14% Similarity=0.217 Sum_probs=78.1
Q ss_pred CCCeEEEECCCcchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~-Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
++.+|||+|||+|.++..++.. +..+|+++|+++.++ +.|+++. .+++++.+|+.++. ...+||
T Consensus 31 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i-~~a~~~~------~~~~~~~~d~~~~~--------~~~~fD 95 (258)
T PRK01683 31 NPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAML-AEARSRL------PDCQFVEADIASWQ--------PPQALD 95 (258)
T ss_pred CCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHH-HHHHHhC------CCCeEEECchhccC--------CCCCcc
Confidence 5789999999999999887765 345899999999999 9998874 23778999987653 135899
Q ss_pred EEEECCCCCC-ccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 234 YMSVTPPYTA-VDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 234 lV~~dPPy~~-~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
+|+++..++. .+....++.+. +.|+|||++++..+
T Consensus 96 ~v~~~~~l~~~~d~~~~l~~~~--~~LkpgG~~~~~~~ 131 (258)
T PRK01683 96 LIFANASLQWLPDHLELFPRLV--SLLAPGGVLAVQMP 131 (258)
T ss_pred EEEEccChhhCCCHHHHHHHHH--HhcCCCcEEEEECC
Confidence 9999977643 35566677665 58999999998754
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.1e-10 Score=115.84 Aligned_cols=107 Identities=19% Similarity=0.208 Sum_probs=83.0
Q ss_pred CCCeEEEECCCcchHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHhHHHh-----CCC-CceEEEEecHHHHHHHHhhhcC
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGC-SEVHFVEMDPWVVSNVLIPNLEWT-----GFL-DVSSIHTVRVETFLERAEQFVG 227 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga-~~V~aVDin~~al~~~ar~N~~~~-----gl~-~~v~ii~gD~~~~l~~~~~~~~ 227 (317)
+.++|||+|||+|.++.++++.+. .+|++||+|++++ +.+++|.... .++ ++++++.+|+.+++...
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi-~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~----- 370 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMT-ELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKL----- 370 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHH-HHHHhCCcchhhhccccCCCceEEEEChHHHHHHhC-----
Confidence 568999999999999999888754 7999999999999 9999964221 222 47999999999987653
Q ss_pred CCCCccEEEECCCCCCc-----c-HHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 228 KDGPFDYMSVTPPYTAV-----D-YEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 228 ~~~~fDlV~~dPPy~~~-----~-~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
.++||+|++|+|.... . .++.++.+. +.|+|||++++...
T Consensus 371 -~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~--~~L~pgG~lv~~~~ 416 (521)
T PRK03612 371 -AEKFDVIIVDLPDPSNPALGKLYSVEFYRLLK--RRLAPDGLLVVQST 416 (521)
T ss_pred -CCCCCEEEEeCCCCCCcchhccchHHHHHHHH--HhcCCCeEEEEecC
Confidence 3689999999876432 1 134555554 48999999998654
|
|
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=2e-10 Score=110.53 Aligned_cols=123 Identities=15% Similarity=0.076 Sum_probs=79.7
Q ss_pred ceE-EecCCCCCC--CCChHHHHHHHHHHHhhcC-CCCCCCCCCeEEEECCCcchHHHHHHHc-CCCEEEEEeCCHHHHH
Q 021116 118 RKK-LLSPKGMDV--RPMMEVVKGAAFDILQSAG-GCPASLRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVS 192 (317)
Q Consensus 118 G~~-l~~p~~~~~--rpt~~~v~~alf~~L~~~~-~~~~~~~~~rVLDlgcGtG~l~Ieaas~-Ga~~V~aVDin~~al~ 192 (317)
|.. +..|.++-. -|........+.+.|.... +.-....+.++||+|||+|.+...++.+ ...+++++|+|+.++
T Consensus 73 gl~~wdip~~~LcPpiP~R~~Yi~~l~dll~~~~~~~~p~~~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al- 151 (321)
T PRK11727 73 GVAHWDIPAGYLCPPIPGRADYIHHLADLLAEDNGGVIPRGANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQAL- 151 (321)
T ss_pred CCCcccCCCCCcCCCCCcHHHHHHHHHHHhcccccccCCCCCCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHH-
Confidence 444 256665531 2323333344555554310 0000124689999999999777655443 334799999999999
Q ss_pred HHHHHhHHHh-CCCCceEEEE-ecHHHHHHHHhhhcCCCCCccEEEECCCCCCc
Q 021116 193 NVLIPNLEWT-GFLDVSSIHT-VRVETFLERAEQFVGKDGPFDYMSVTPPYTAV 244 (317)
Q Consensus 193 ~~ar~N~~~~-gl~~~v~ii~-gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~ 244 (317)
+.|++|++.| ++.++++++. .|..+++.... ...+.||+|++||||...
T Consensus 152 ~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~---~~~~~fDlivcNPPf~~s 202 (321)
T PRK11727 152 ASAQAIISANPGLNGAIRLRLQKDSKAIFKGII---HKNERFDATLCNPPFHAS 202 (321)
T ss_pred HHHHHHHHhccCCcCcEEEEEccchhhhhhccc---ccCCceEEEEeCCCCcCc
Confidence 9999999999 8988888864 45554443211 124689999999999754
|
|
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.3e-10 Score=105.40 Aligned_cols=103 Identities=16% Similarity=0.208 Sum_probs=82.6
Q ss_pred ChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEE
Q 021116 132 MMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH 211 (317)
Q Consensus 132 t~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii 211 (317)
|.+.+++++.+..... .....|+|.+||.|.-++..+..|+ .|++||+||.-+ .+|++|++..|+.++|+|+
T Consensus 77 Tpe~ia~~iA~~v~~~------~~~~~iidaf~g~gGntiqfa~~~~-~VisIdiDPikI-a~AkhNaeiYGI~~rItFI 148 (263)
T KOG2730|consen 77 TPEKIAEHIANRVVAC------MNAEVIVDAFCGVGGNTIQFALQGP-YVIAIDIDPVKI-ACARHNAEVYGVPDRITFI 148 (263)
T ss_pred ccHHHHHHHHHHHHHh------cCcchhhhhhhcCCchHHHHHHhCC-eEEEEeccHHHH-HHHhccceeecCCceeEEE
Confidence 4456666666554432 2457899999999999999888876 699999999999 9999999999999999999
Q ss_pred EecHHHHHHHHhhhcCCCCCccEEEECCCCCCcc
Q 021116 212 TVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVD 245 (317)
Q Consensus 212 ~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~ 245 (317)
+||+.+....+. .....+|+||+.||++...
T Consensus 149 ~GD~ld~~~~lq---~~K~~~~~vf~sppwggp~ 179 (263)
T KOG2730|consen 149 CGDFLDLASKLK---ADKIKYDCVFLSPPWGGPS 179 (263)
T ss_pred echHHHHHHHHh---hhhheeeeeecCCCCCCcc
Confidence 999988765542 2234588999999997643
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=5.3e-10 Score=104.58 Aligned_cols=105 Identities=13% Similarity=0.043 Sum_probs=77.1
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
.++.+|||+|||+|..+..++.....+|+++|+++.++ +.|+++... .++++++.+|+.+. +..+++||
T Consensus 51 ~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~-~~a~~~~~~---~~~i~~~~~D~~~~-------~~~~~~FD 119 (263)
T PTZ00098 51 NENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMV-NIAKLRNSD---KNKIEFEANDILKK-------DFPENTFD 119 (263)
T ss_pred CCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHH-HHHHHHcCc---CCceEEEECCcccC-------CCCCCCeE
Confidence 36789999999999998877654334799999999998 999987653 35689999997642 12346899
Q ss_pred EEEECCC-CCCc--cHHHHHHHHHHcCCcCCCeEEEEEeCC
Q 021116 234 YMSVTPP-YTAV--DYEVLMAQISKSALVGKDSFIVVEYPL 271 (317)
Q Consensus 234 lV~~dPP-y~~~--~~~~~l~~L~~~~lLkpgG~ivv~~~~ 271 (317)
+|++..- ++.. +...+++.+. ++|+|||++++....
T Consensus 120 ~V~s~~~l~h~~~~d~~~~l~~i~--r~LkPGG~lvi~d~~ 158 (263)
T PTZ00098 120 MIYSRDAILHLSYADKKKLFEKCY--KWLKPNGILLITDYC 158 (263)
T ss_pred EEEEhhhHHhCCHHHHHHHHHHHH--HHcCCCcEEEEEEec
Confidence 9998432 2222 3455666554 589999999987653
|
|
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=5.8e-10 Score=106.22 Aligned_cols=92 Identities=16% Similarity=0.147 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEe
Q 021116 134 EVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTV 213 (317)
Q Consensus 134 ~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~g 213 (317)
..+...+.+.+.. .++.+|||+|||+|.++..++..+ .+|+++|+|+.++ +.+++|++..+..++++++++
T Consensus 22 ~~i~~~Iv~~~~~-------~~~~~VLEIG~G~G~LT~~Ll~~~-~~V~avEiD~~li-~~l~~~~~~~~~~~~v~ii~~ 92 (294)
T PTZ00338 22 PLVLDKIVEKAAI-------KPTDTVLEIGPGTGNLTEKLLQLA-KKVIAIEIDPRMV-AELKKRFQNSPLASKLEVIEG 92 (294)
T ss_pred HHHHHHHHHhcCC-------CCcCEEEEecCchHHHHHHHHHhC-CcEEEEECCHHHH-HHHHHHHHhcCCCCcEEEEEC
Confidence 3455555555433 367899999999999999888875 4799999999998 999999988775567999999
Q ss_pred cHHHHHHHHhhhcCCCCCccEEEECCCCCC
Q 021116 214 RVETFLERAEQFVGKDGPFDYMSVTPPYTA 243 (317)
Q Consensus 214 D~~~~l~~~~~~~~~~~~fDlV~~dPPy~~ 243 (317)
|+.+.. ...||.|+.|+||..
T Consensus 93 Dal~~~---------~~~~d~VvaNlPY~I 113 (294)
T PTZ00338 93 DALKTE---------FPYFDVCVANVPYQI 113 (294)
T ss_pred CHhhhc---------ccccCEEEecCCccc
Confidence 997642 246899999999974
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.7e-09 Score=99.16 Aligned_cols=107 Identities=16% Similarity=0.192 Sum_probs=82.8
Q ss_pred CCCeEEEECCCcchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHhHHHhC--C-CCceEEEEecHHHHHHHHhhhcCCCC
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTG--F-LDVSSIHTVRVETFLERAEQFVGKDG 230 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~G-a~~V~aVDin~~al~~~ar~N~~~~g--l-~~~v~ii~gD~~~~l~~~~~~~~~~~ 230 (317)
..++|||+|||+|.++.++++.+ ..+++++|+|+.++ +.+++++...+ + ..+++++.+|+.+++... .+
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi-~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~------~~ 144 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVI-ELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADT------EN 144 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHH-HHHHHHhHhhcccccCCceEEEECchHHHHHhC------CC
Confidence 45699999999999998888765 57899999999998 99999876543 1 246889999999887653 36
Q ss_pred CccEEEECCCCCCcc-----HHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 231 PFDYMSVTPPYTAVD-----YEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 231 ~fDlV~~dPPy~~~~-----~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
+||+|++|++..... ..+.++.+. ++|+|||++++...
T Consensus 145 ~yDvIi~D~~~~~~~~~~l~~~ef~~~~~--~~L~pgG~lv~~~~ 187 (270)
T TIGR00417 145 TFDVIIVDSTDPVGPAETLFTKEFYELLK--KALNEDGIFVAQSE 187 (270)
T ss_pred CccEEEEeCCCCCCcccchhHHHHHHHHH--HHhCCCcEEEEcCC
Confidence 899999998743221 244555554 48999999998743
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=99.13 E-value=7.2e-10 Score=84.37 Aligned_cols=101 Identities=21% Similarity=0.260 Sum_probs=77.1
Q ss_pred eEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEE
Q 021116 158 RWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSV 237 (317)
Q Consensus 158 rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~ 237 (317)
+++|+|||+|.++..++.....+++++|.++.++ +.++++.+..+. .+++++.+|+.+.... ..++||+|++
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~------~~~~~d~i~~ 72 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVAL-ELARKAAAALLA-DNVEVLKGDAEELPPE------ADESFDVIIS 72 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHH-HHHHHHHhcccc-cceEEEEcChhhhccc------cCCceEEEEE
Confidence 4899999999999887765566899999999998 888865444443 4589999998876531 1367999999
Q ss_pred CCCCCC--ccHHHHHHHHHHcCCcCCCeEEEEE
Q 021116 238 TPPYTA--VDYEVLMAQISKSALVGKDSFIVVE 268 (317)
Q Consensus 238 dPPy~~--~~~~~~l~~L~~~~lLkpgG~ivv~ 268 (317)
++++.. ......++.+. +.++++|++++.
T Consensus 73 ~~~~~~~~~~~~~~l~~~~--~~l~~~g~~~~~ 103 (107)
T cd02440 73 DPPLHHLVEDLARFLEEAR--RLLKPGGVLVLT 103 (107)
T ss_pred ccceeehhhHHHHHHHHHH--HHcCCCCEEEEE
Confidence 998753 24455566554 378999999886
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.8e-10 Score=104.50 Aligned_cols=108 Identities=17% Similarity=0.137 Sum_probs=88.6
Q ss_pred CCCCeEEEECCCcchHHHHHHH-cC-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCC
Q 021116 154 LRPGRWLDLYSGTGSVGIEAIS-RG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGP 231 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas-~G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~ 231 (317)
.++.+|+|.|+|||.++..++. .| ..+|+.+|+.++.+ +.|++|++.+++.|++++..+|+.+... ...
T Consensus 93 ~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~-k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~--------~~~ 163 (256)
T COG2519 93 SPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFA-KTARENLSEFGLGDRVTLKLGDVREGID--------EED 163 (256)
T ss_pred CCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHH-HHHHHHHHHhccccceEEEecccccccc--------ccc
Confidence 5799999999999999987663 34 36899999999998 9999999999999889999999987653 358
Q ss_pred ccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCCCCCcc
Q 021116 232 FDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDML 276 (317)
Q Consensus 232 fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~~~l~ 276 (317)
||.||+|.|--+ +.++.+.+ .|+|||.+++..+..+++.
T Consensus 164 vDav~LDmp~PW----~~le~~~~--~Lkpgg~~~~y~P~veQv~ 202 (256)
T COG2519 164 VDAVFLDLPDPW----NVLEHVSD--ALKPGGVVVVYSPTVEQVE 202 (256)
T ss_pred cCEEEEcCCChH----HHHHHHHH--HhCCCcEEEEEcCCHHHHH
Confidence 999999987432 34555543 6899999999988766654
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.7e-09 Score=97.02 Aligned_cols=121 Identities=17% Similarity=0.122 Sum_probs=87.5
Q ss_pred CChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcC--CCEEEEEeCCHHHHHHHHHHhHHHhCCCCce
Q 021116 131 PMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRG--CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVS 208 (317)
Q Consensus 131 pt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~G--a~~V~aVDin~~al~~~ar~N~~~~gl~~~v 208 (317)
|.....+..++..+.. .++.+|||+|||+|.++..++... ..+++++|.++.++ +.++++... ...++
T Consensus 2 ~~~~~~~~~~~~~~~~-------~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~-~~a~~~~~~--~~~~~ 71 (241)
T PRK08317 2 PDFRRYRARTFELLAV-------QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAML-ALAKERAAG--LGPNV 71 (241)
T ss_pred chHHHHHHHHHHHcCC-------CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHH-HHHHHHhhC--CCCce
Confidence 4445556666665543 357899999999999999877653 35899999999998 999988432 23458
Q ss_pred EEEEecHHHHHHHHhhhcCCCCCccEEEECCCCC-CccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 209 SIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYT-AVDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 209 ~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~-~~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
+++.+|+.+.. ...+.||+|+++-.+. ..+....++.+. ++|+|||.+++...
T Consensus 72 ~~~~~d~~~~~-------~~~~~~D~v~~~~~~~~~~~~~~~l~~~~--~~L~~gG~l~~~~~ 125 (241)
T PRK08317 72 EFVRGDADGLP-------FPDGSFDAVRSDRVLQHLEDPARALAEIA--RVLRPGGRVVVLDT 125 (241)
T ss_pred EEEecccccCC-------CCCCCceEEEEechhhccCCHHHHHHHHH--HHhcCCcEEEEEec
Confidence 89999876532 1246899999875442 235566777665 48999999987654
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.11 E-value=7.7e-10 Score=104.43 Aligned_cols=106 Identities=16% Similarity=0.146 Sum_probs=88.2
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
.+|.+|||+|||-|.+++.++.+-..+|+++++|++.. +.+++-++..|++++++++-.|..++. +.||
T Consensus 71 ~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~-~~~~~r~~~~gl~~~v~v~l~d~rd~~----------e~fD 139 (283)
T COG2230 71 KPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQL-AYAEKRIAARGLEDNVEVRLQDYRDFE----------EPFD 139 (283)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHH-HHHHHHHHHcCCCcccEEEeccccccc----------cccc
Confidence 47999999999999999999887444799999999998 999999999999988999999988763 5699
Q ss_pred EEEECCCCC---CccHHHHHHHHHHcCCcCCCeEEEEEeCCC
Q 021116 234 YMSVTPPYT---AVDYEVLMAQISKSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 234 lV~~dPPy~---~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~ 272 (317)
-|++=-.|. ...+...++.+. ++|+|||.+++..-..
T Consensus 140 rIvSvgmfEhvg~~~~~~ff~~~~--~~L~~~G~~llh~I~~ 179 (283)
T COG2230 140 RIVSVGMFEHVGKENYDDFFKKVY--ALLKPGGRMLLHSITG 179 (283)
T ss_pred eeeehhhHHHhCcccHHHHHHHHH--hhcCCCceEEEEEecC
Confidence 999744442 235788888776 4999999999876544
|
|
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.6e-10 Score=90.71 Aligned_cols=93 Identities=24% Similarity=0.288 Sum_probs=68.3
Q ss_pred EEEECCCcchHHHHHHHc---CC-CEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccE
Q 021116 159 WLDLYSGTGSVGIEAISR---GC-SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (317)
Q Consensus 159 VLDlgcGtG~l~Ieaas~---Ga-~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDl 234 (317)
|||+|||+|.....++.. |. .+++++|+|++++ +.++++....+. +++++++|+.++.. . .++||+
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l-~~~~~~~~~~~~--~~~~~~~D~~~l~~-~------~~~~D~ 70 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEML-ELAKKRFSEDGP--KVRFVQADARDLPF-S------DGKFDL 70 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHH-HHHHHHSHHTTT--TSEEEESCTTCHHH-H------SSSEEE
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHH-HHHHHhchhcCC--ceEEEECCHhHCcc-c------CCCeeE
Confidence 799999999999987765 32 6899999999999 999999987766 48999999988542 2 479999
Q ss_pred EEE-CCCCCCc---cHHHHHHHHHHcCCcCCCe
Q 021116 235 MSV-TPPYTAV---DYEVLMAQISKSALVGKDS 263 (317)
Q Consensus 235 V~~-dPPy~~~---~~~~~l~~L~~~~lLkpgG 263 (317)
|++ ...+..- ..+.+++.+. ++|+|||
T Consensus 71 v~~~~~~~~~~~~~~~~~ll~~~~--~~l~pgG 101 (101)
T PF13649_consen 71 VVCSGLSLHHLSPEELEALLRRIA--RLLRPGG 101 (101)
T ss_dssp EEE-TTGGGGSSHHHHHHHHHHHH--HTEEEEE
T ss_pred EEEcCCccCCCCHHHHHHHHHHHH--HHhCCCC
Confidence 999 4322221 3455666665 4889887
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.5e-09 Score=104.60 Aligned_cols=101 Identities=15% Similarity=0.020 Sum_probs=76.6
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCC--CEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCC
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGC--SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGP 231 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga--~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~ 231 (317)
.++.+|||+|||+|.+++.+++... .+|+++|+++.++ +.|++|++.+|++ +++++++|+.+.... ...
T Consensus 79 ~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l-~~Ar~~l~~~g~~-nV~~i~gD~~~~~~~-------~~~ 149 (322)
T PRK13943 79 DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKIC-EIAKRNVRRLGIE-NVIFVCGDGYYGVPE-------FAP 149 (322)
T ss_pred CCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHH-HHHHHHHHHcCCC-cEEEEeCChhhcccc-------cCC
Confidence 3578999999999999988776432 3699999999999 9999999999985 589999998664321 257
Q ss_pred ccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 232 FDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 232 fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
||+|+++.. . ....+.+. +.|++||.+++...
T Consensus 150 fD~Ii~~~g--~---~~ip~~~~--~~LkpgG~Lvv~~~ 181 (322)
T PRK13943 150 YDVIFVTVG--V---DEVPETWF--TQLKEGGRVIVPIN 181 (322)
T ss_pred ccEEEECCc--h---HHhHHHHH--HhcCCCCEEEEEeC
Confidence 999999842 1 12222222 26899999988654
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.09 E-value=6.6e-10 Score=100.31 Aligned_cols=103 Identities=18% Similarity=0.076 Sum_probs=80.8
Q ss_pred CeEEEECCCcchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEE
Q 021116 157 GRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYM 235 (317)
Q Consensus 157 ~rVLDlgcGtG~l~Ieaas~G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV 235 (317)
++|||+|||+|.+++.+++.. ..+|+++|+++.++ +.++++++..|+.++++++.+|+.+.. ..++||+|
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~-~~a~~~~~~~gl~~~i~~~~~d~~~~~--------~~~~fD~I 71 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQA-EVGRERIRALGLQGRIRIFYRDSAKDP--------FPDTYDLV 71 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHH-HHHHHHHHhcCCCcceEEEecccccCC--------CCCCCCEe
Confidence 379999999999998887653 34799999999998 999999999999888999999975431 12579999
Q ss_pred EECCCC-CCccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 236 SVTPPY-TAVDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 236 ~~dPPy-~~~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
++.-.+ +..+....++.+. ++|+|||++++...
T Consensus 72 ~~~~~l~~~~~~~~~l~~~~--~~LkpgG~l~i~~~ 105 (224)
T smart00828 72 FGFEVIHHIKDKMDLFSNIS--RHLKDGGHLVLADF 105 (224)
T ss_pred ehHHHHHhCCCHHHHHHHHH--HHcCCCCEEEEEEc
Confidence 974322 2234566777765 58999999998654
|
|
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.3e-09 Score=98.61 Aligned_cols=116 Identities=18% Similarity=0.210 Sum_probs=82.4
Q ss_pred ChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEE
Q 021116 132 MMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH 211 (317)
Q Consensus 132 t~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii 211 (317)
..+.+++.+++++... ..++.+|||+|||+|.++..++..+. +|+++|+++.++ +.|++++...+..+++++.
T Consensus 37 ~~~~~~~~~~~~l~~~-----~~~~~~vLDiGcG~G~~~~~la~~~~-~v~gvD~s~~~i-~~a~~~~~~~~~~~~i~~~ 109 (219)
T TIGR02021 37 GRAAMRRKLLDWLPKD-----PLKGKRVLDAGCGTGLLSIELAKRGA-IVKAVDISEQMV-QMARNRAQGRDVAGNVEFE 109 (219)
T ss_pred HHHHHHHHHHHHHhcC-----CCCCCEEEEEeCCCCHHHHHHHHCCC-EEEEEECCHHHH-HHHHHHHHhcCCCCceEEE
Confidence 3455666777777531 14578999999999999998888765 799999999999 9999999887775679999
Q ss_pred EecHHHHHHHHhhhcCCCCCccEEEE-CCCCCC--ccHHHHHHHHHHcCCcCCCeEEE
Q 021116 212 TVRVETFLERAEQFVGKDGPFDYMSV-TPPYTA--VDYEVLMAQISKSALVGKDSFIV 266 (317)
Q Consensus 212 ~gD~~~~l~~~~~~~~~~~~fDlV~~-dPPy~~--~~~~~~l~~L~~~~lLkpgG~iv 266 (317)
.+|+.+. .++||+|++ +.-+.. ......+..+. +++++++++.
T Consensus 110 ~~d~~~~----------~~~fD~ii~~~~l~~~~~~~~~~~l~~i~--~~~~~~~~i~ 155 (219)
T TIGR02021 110 VNDLLSL----------CGEFDIVVCMDVLIHYPASDMAKALGHLA--SLTKERVIFT 155 (219)
T ss_pred ECChhhC----------CCCcCEEEEhhHHHhCCHHHHHHHHHHHH--HHhCCCEEEE
Confidence 9998753 267999987 322221 12334444443 3556554443
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.08 E-value=5.5e-09 Score=92.44 Aligned_cols=135 Identities=12% Similarity=0.116 Sum_probs=96.5
Q ss_pred CCCeEEEECCCcchHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCc
Q 021116 155 RPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF 232 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~--Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~f 232 (317)
....++|+|||||.++-.+++. +.....+.|+||+|+ +..++.++.|+.. +..++.|+...+. .++.
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~-~~Tl~TA~~n~~~--~~~V~tdl~~~l~--------~~~V 111 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEAL-EATLETARCNRVH--IDVVRTDLLSGLR--------NESV 111 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHH-HHHHHHHHhcCCc--cceeehhHHhhhc--------cCCc
Confidence 3678999999999999776664 345789999999998 9999999998874 7789999887764 3789
Q ss_pred cEEEECCCCCCcc------------------HHHHHHHHH--HcCCcCCCeEEEEEeCCCCCcccc-----CCCe--EEE
Q 021116 233 DYMSVTPPYTAVD------------------YEVLMAQIS--KSALVGKDSFIVVEYPLRTDMLDT-----CGCL--VKI 285 (317)
Q Consensus 233 DlV~~dPPy~~~~------------------~~~~l~~L~--~~~lLkpgG~ivv~~~~~~~l~~~-----~~~~--~~~ 285 (317)
|+++.||||-... -.+.++.+. -..+|.|.|++|+..-......+. ..+| .+.
T Consensus 112 DvLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p~ei~k~l~~~g~~~~~~ 191 (209)
T KOG3191|consen 112 DVLVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKPKEILKILEKKGYGVRIA 191 (209)
T ss_pred cEEEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCHHHHHHHHhhcccceeEE
Confidence 9999999996421 122333332 124889999999876655443311 1222 345
Q ss_pred EEeecCceEEEEEee
Q 021116 286 KDRRFGRTHLAIYGP 300 (317)
Q Consensus 286 ~~r~yG~~~l~~~~p 300 (317)
.+|+.|...+.++.-
T Consensus 192 ~~Rk~~~E~l~ilkf 206 (209)
T KOG3191|consen 192 MQRKAGGETLSILKF 206 (209)
T ss_pred EEEecCCceEEEEEE
Confidence 667788777776643
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.2e-09 Score=98.64 Aligned_cols=104 Identities=12% Similarity=0.017 Sum_probs=73.5
Q ss_pred CCCCeEEEECCCcchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF 232 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~-Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~f 232 (317)
.++.+|||+|||+|.+++.++.. +..+|+++|++++++ +.+.++++.. +++.++.+|+.+..... .-.++|
T Consensus 71 ~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml-~~l~~~a~~~---~nv~~i~~D~~~~~~~~----~l~~~~ 142 (226)
T PRK04266 71 KKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPM-RELLEVAEER---KNIIPILADARKPERYA----HVVEKV 142 (226)
T ss_pred CCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHH-HHHHHHhhhc---CCcEEEECCCCCcchhh----hccccC
Confidence 36789999999999999988765 234799999999998 8888887643 34788999986421000 012569
Q ss_pred cEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEE
Q 021116 233 DYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVE 268 (317)
Q Consensus 233 DlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~ 268 (317)
|+|+.|.+.. ......++.+. +.|+|||.+++.
T Consensus 143 D~i~~d~~~p-~~~~~~L~~~~--r~LKpGG~lvI~ 175 (226)
T PRK04266 143 DVIYQDVAQP-NQAEIAIDNAE--FFLKDGGYLLLA 175 (226)
T ss_pred CEEEECCCCh-hHHHHHHHHHH--HhcCCCcEEEEE
Confidence 9999986421 12223344443 589999999984
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.6e-09 Score=108.81 Aligned_cols=105 Identities=10% Similarity=0.024 Sum_probs=80.4
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccE
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDl 234 (317)
++.+|||+|||+|.+++.+++....+|+++|+++.++ +.|++|.. +..++++++.+|+.+.. ..+++||+
T Consensus 266 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l-~~A~~~~~--~~~~~v~~~~~d~~~~~-------~~~~~fD~ 335 (475)
T PLN02336 266 PGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMI-SFALERAI--GRKCSVEFEVADCTKKT-------YPDNSFDV 335 (475)
T ss_pred CCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHH-HHHHHHhh--cCCCceEEEEcCcccCC-------CCCCCEEE
Confidence 5789999999999999877765334799999999999 99999875 44456899999986531 12467999
Q ss_pred EEECCCC-CCccHHHHHHHHHHcCCcCCCeEEEEEeCC
Q 021116 235 MSVTPPY-TAVDYEVLMAQISKSALVGKDSFIVVEYPL 271 (317)
Q Consensus 235 V~~dPPy-~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~ 271 (317)
|++.-.+ +..+....++.+. ++|+|||++++....
T Consensus 336 I~s~~~l~h~~d~~~~l~~~~--r~LkpgG~l~i~~~~ 371 (475)
T PLN02336 336 IYSRDTILHIQDKPALFRSFF--KWLKPGGKVLISDYC 371 (475)
T ss_pred EEECCcccccCCHHHHHHHHH--HHcCCCeEEEEEEec
Confidence 9986443 3345566777765 589999999987643
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.6e-09 Score=97.59 Aligned_cols=105 Identities=17% Similarity=0.152 Sum_probs=80.9
Q ss_pred CCCeEEEECCCcchHHHHHHHcC--CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCc
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRG--CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF 232 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~G--a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~f 232 (317)
++.+|||+|||+|.++..++..+ ..+++++|+++.++ +.+++|+...+..++++++.+|+.+.. ...+.|
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~-~~a~~~~~~~~~~~~~~~~~~d~~~~~-------~~~~~~ 122 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGML-AVGREKLRDLGLSGNVEFVQGDAEALP-------FPDNSF 122 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHH-HHHHHhhcccccccCeEEEecccccCC-------CCCCCc
Confidence 56899999999999999887766 36899999999999 999999987766667899999987642 124689
Q ss_pred cEEEECCCCC-CccHHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 233 DYMSVTPPYT-AVDYEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 233 DlV~~dPPy~-~~~~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
|+|+++--.. ..+....++.+. ++|++||++++..
T Consensus 123 D~I~~~~~l~~~~~~~~~l~~~~--~~L~~gG~li~~~ 158 (239)
T PRK00216 123 DAVTIAFGLRNVPDIDKALREMY--RVLKPGGRLVILE 158 (239)
T ss_pred cEEEEecccccCCCHHHHHHHHH--HhccCCcEEEEEE
Confidence 9999753211 224566666665 4899999987653
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.2e-09 Score=102.66 Aligned_cols=98 Identities=16% Similarity=0.123 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEe
Q 021116 134 EVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTV 213 (317)
Q Consensus 134 ~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~g 213 (317)
..+.+.+.+.+.. .++.+|||+|||+|.++..++.++. +|+++|+|+.++ +.+++|+.. ++++++++
T Consensus 28 ~~i~~~i~~~l~~-------~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~-~~~~~~~~~----~~v~~i~~ 94 (272)
T PRK00274 28 ENILDKIVDAAGP-------QPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLA-PILAETFAE----DNLTIIEG 94 (272)
T ss_pred HHHHHHHHHhcCC-------CCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHH-HHHHHhhcc----CceEEEEC
Confidence 3455666666543 3578999999999999999888875 799999999998 999988742 46899999
Q ss_pred cHHHHHHHHhhhcCCCCCccEEEECCCCCCccHHHHHHHH
Q 021116 214 RVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQI 253 (317)
Q Consensus 214 D~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L 253 (317)
|+.++... +..+|.|+.||||... ..++..+
T Consensus 95 D~~~~~~~-------~~~~~~vv~NlPY~is--s~ii~~~ 125 (272)
T PRK00274 95 DALKVDLS-------ELQPLKVVANLPYNIT--TPLLFHL 125 (272)
T ss_pred hhhcCCHH-------HcCcceEEEeCCccch--HHHHHHH
Confidence 98875211 1115999999999743 3344444
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.8e-09 Score=106.29 Aligned_cols=109 Identities=9% Similarity=0.060 Sum_probs=85.6
Q ss_pred CCCeEEEECCCcchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
.+..+||+|||+|.+.+.++.+. ...++|+|+++.++ +.|.+++..+|+.| +.++++|+..++..+ .++++|
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i-~~a~~ka~~~gL~N-V~~i~~DA~~ll~~~-----~~~s~D 194 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSI-EQVLKQIELLNLKN-LLIINYDARLLLELL-----PSNSVE 194 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHH-HHHHHHHHHcCCCc-EEEEECCHHHhhhhC-----CCCcee
Confidence 45689999999999999987763 34699999999999 99999999999865 999999998765433 357899
Q ss_pred EEEECCCCC--CccH-----HHHHHHHHHcCCcCCCeEEEEEeCCC
Q 021116 234 YMSVTPPYT--AVDY-----EVLMAQISKSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 234 lV~~dPPy~--~~~~-----~~~l~~L~~~~lLkpgG~ivv~~~~~ 272 (317)
.|+++.|.. +... +..++.+. ++|++||.+.+.++..
T Consensus 195 ~I~lnFPdPW~KkrHRRlv~~~fL~e~~--RvLkpGG~l~l~TD~~ 238 (390)
T PRK14121 195 KIFVHFPVPWDKKPHRRVISEDFLNEAL--RVLKPGGTLELRTDSE 238 (390)
T ss_pred EEEEeCCCCccccchhhccHHHHHHHHH--HHcCCCcEEEEEEECH
Confidence 999976532 2221 34455544 6899999999977644
|
|
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.5e-10 Score=107.41 Aligned_cols=107 Identities=15% Similarity=0.166 Sum_probs=86.8
Q ss_pred CCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCc
Q 021116 153 SLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF 232 (317)
Q Consensus 153 ~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~f 232 (317)
+..++.|||+|||+|.++..|+..|+++|++||.+..+ +.|+.-++.|++.++|+++.|.+++.. -.++.
T Consensus 175 DF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~MA--qyA~~Lv~~N~~~~rItVI~GKiEdie--------LPEk~ 244 (517)
T KOG1500|consen 175 DFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASEMA--QYARKLVASNNLADRITVIPGKIEDIE--------LPEKV 244 (517)
T ss_pred ccCCcEEEEecCCccHHHHHHHHhCcceEEEEehhHHH--HHHHHHHhcCCccceEEEccCcccccc--------Cchhc
Confidence 46799999999999999999999999999999999855 899999999999999999999998863 14789
Q ss_pred cEEEECCC-CCCccHHHHHHH-HHHcCCcCCCeEEEEEeC
Q 021116 233 DYMSVTPP-YTAVDYEVLMAQ-ISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 233 DlV~~dPP-y~~~~~~~~l~~-L~~~~lLkpgG~ivv~~~ 270 (317)
|+||..|. |...+ +..++. +.+.++|+|+|..+-...
T Consensus 245 DviISEPMG~mL~N-ERMLEsYl~Ark~l~P~GkMfPT~g 283 (517)
T KOG1500|consen 245 DVIISEPMGYMLVN-ERMLESYLHARKWLKPNGKMFPTVG 283 (517)
T ss_pred cEEEeccchhhhhh-HHHHHHHHHHHhhcCCCCcccCccc
Confidence 99999985 22111 344443 335589999999876554
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=99.06 E-value=9.9e-10 Score=96.67 Aligned_cols=112 Identities=24% Similarity=0.349 Sum_probs=74.7
Q ss_pred CCCCeEEEECCCcchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHhHHHhC--CCCceEEEEecHHHHH-HHHhhhcCCC
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTG--FLDVSSIHTVRVETFL-ERAEQFVGKD 229 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~-Ga~~V~aVDin~~al~~~ar~N~~~~g--l~~~v~ii~gD~~~~l-~~~~~~~~~~ 229 (317)
.++.+|||||||+|..|+.++.. ++.+|++-|.++ .+ +.++.|++.|+ ..+++.+..-|..+.. .... ..
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l-~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~----~~ 117 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VL-ELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLL----EP 117 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HH-HHHHHHHHTT--------EEEE--TTS-HHHHHH----S-
T ss_pred cCCceEEEECCccchhHHHHHhccCCceEEEeccch-hh-HHHHHHHHhccccccccccCcEEEecCccccccc----cc
Confidence 57899999999999999998887 677999999999 88 99999999988 5566777777654422 1111 23
Q ss_pred CCccEEE-ECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCCCC
Q 021116 230 GPFDYMS-VTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRT 273 (317)
Q Consensus 230 ~~fDlV~-~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~~ 273 (317)
.+||+|+ .|-=|....++.+++.+.. ++++++.+++.+..+.
T Consensus 118 ~~~D~IlasDv~Y~~~~~~~L~~tl~~--ll~~~~~vl~~~~~R~ 160 (173)
T PF10294_consen 118 HSFDVILASDVLYDEELFEPLVRTLKR--LLKPNGKVLLAYKRRR 160 (173)
T ss_dssp SSBSEEEEES--S-GGGHHHHHHHHHH--HBTT-TTEEEEEE-S-
T ss_pred ccCCEEEEecccchHHHHHHHHHHHHH--HhCCCCEEEEEeCEec
Confidence 5899999 5887877778888888764 7899888888887663
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.4e-09 Score=97.26 Aligned_cols=113 Identities=19% Similarity=0.146 Sum_probs=79.8
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHc-CC-CEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEe
Q 021116 136 VKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-GC-SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTV 213 (317)
Q Consensus 136 v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~-Ga-~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~g 213 (317)
+...+.+.|.. .++.+|||+|||||..+..++.. |. .+|++||+++..+ +.|++|++.+++. +++++.+
T Consensus 60 ~~a~~l~~L~l-------~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~-~~A~~~l~~~~~~-nv~~~~g 130 (209)
T PF01135_consen 60 MVARMLEALDL-------KPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELA-ERARRNLARLGID-NVEVVVG 130 (209)
T ss_dssp HHHHHHHHTTC--------TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHH-HHHHHHHHHHTTH-SEEEEES
T ss_pred HHHHHHHHHhc-------CCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHH-HHHHHHHHHhccC-ceeEEEc
Confidence 34455566654 47899999999999999766554 32 3699999999998 9999999999986 4999999
Q ss_pred cHHHHHHHHhhhcCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCC
Q 021116 214 RVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPL 271 (317)
Q Consensus 214 D~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~ 271 (317)
|....... ..+||.|+++..... ....+++ .|++||++++-...
T Consensus 131 dg~~g~~~-------~apfD~I~v~~a~~~-ip~~l~~------qL~~gGrLV~pi~~ 174 (209)
T PF01135_consen 131 DGSEGWPE-------EAPFDRIIVTAAVPE-IPEALLE------QLKPGGRLVAPIGQ 174 (209)
T ss_dssp -GGGTTGG-------G-SEEEEEESSBBSS---HHHHH------TEEEEEEEEEEESS
T ss_pred chhhcccc-------CCCcCEEEEeeccch-HHHHHHH------hcCCCcEEEEEEcc
Confidence 98764422 367999999864321 1223332 58999999987764
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.2e-09 Score=98.11 Aligned_cols=103 Identities=18% Similarity=0.255 Sum_probs=76.9
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
.+..++||+|||.|.-++.++++|. .|+++|+|+.++ +.+++-++..+++ ++....|+.++.- .+.||
T Consensus 29 ~~~g~~LDlgcG~GRNalyLA~~G~-~VtAvD~s~~al-~~l~~~a~~~~l~--i~~~~~Dl~~~~~--------~~~yD 96 (192)
T PF03848_consen 29 LKPGKALDLGCGEGRNALYLASQGF-DVTAVDISPVAL-EKLQRLAEEEGLD--IRTRVADLNDFDF--------PEEYD 96 (192)
T ss_dssp S-SSEEEEES-TTSHHHHHHHHTT--EEEEEESSHHHH-HHHHHHHHHTT-T--EEEEE-BGCCBS---------TTTEE
T ss_pred cCCCcEEEcCCCCcHHHHHHHHCCC-eEEEEECCHHHH-HHHHHHHhhcCce--eEEEEecchhccc--------cCCcC
Confidence 4578999999999999999999998 599999999999 8888888888875 8889999876531 36799
Q ss_pred EEEECCC--CCC-ccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 234 YMSVTPP--YTA-VDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 234 lV~~dPP--y~~-~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
+|++.-- |-. ...+.+++.+.+ .++|||++++++.
T Consensus 97 ~I~st~v~~fL~~~~~~~i~~~m~~--~~~pGG~~li~~~ 134 (192)
T PF03848_consen 97 FIVSTVVFMFLQRELRPQIIENMKA--ATKPGGYNLIVTF 134 (192)
T ss_dssp EEEEESSGGGS-GGGHHHHHHHHHH--TEEEEEEEEEEEE
T ss_pred EEEEEEEeccCCHHHHHHHHHHHHh--hcCCcEEEEEEEe
Confidence 9986422 211 245667777764 7999999887654
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.2e-09 Score=98.83 Aligned_cols=108 Identities=18% Similarity=0.143 Sum_probs=83.5
Q ss_pred HHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHH
Q 021116 139 AAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF 218 (317)
Q Consensus 139 alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~ 218 (317)
.+...|.. .++.+|||+|||||..+--+++... +|+.+|+++.-+ +.|++|++.+|+.| +.++++|....
T Consensus 63 ~m~~~L~~-------~~g~~VLEIGtGsGY~aAvla~l~~-~V~siEr~~~L~-~~A~~~L~~lg~~n-V~v~~gDG~~G 132 (209)
T COG2518 63 RMLQLLEL-------KPGDRVLEIGTGSGYQAAVLARLVG-RVVSIERIEELA-EQARRNLETLGYEN-VTVRHGDGSKG 132 (209)
T ss_pred HHHHHhCC-------CCCCeEEEECCCchHHHHHHHHHhC-eEEEEEEcHHHH-HHHHHHHHHcCCCc-eEEEECCcccC
Confidence 45566654 4789999999999999876666543 899999999998 99999999999977 99999998765
Q ss_pred HHHHhhhcCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 219 LERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 219 l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
... ..+||.|++..-.. ..-+.++++ |++||++++-..
T Consensus 133 ~~~-------~aPyD~I~Vtaaa~-~vP~~Ll~Q------L~~gGrlv~PvG 170 (209)
T COG2518 133 WPE-------EAPYDRIIVTAAAP-EVPEALLDQ------LKPGGRLVIPVG 170 (209)
T ss_pred CCC-------CCCcCEEEEeeccC-CCCHHHHHh------cccCCEEEEEEc
Confidence 432 36899999864211 112444544 799999998776
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.4e-08 Score=97.47 Aligned_cols=108 Identities=18% Similarity=0.225 Sum_probs=82.2
Q ss_pred CCCeEEEECCCcchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHhHHHh--CCC-CceEEEEecHHHHHHHHhhhcCCCC
Q 021116 155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWT--GFL-DVSSIHTVRVETFLERAEQFVGKDG 230 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~-Ga~~V~aVDin~~al~~~ar~N~~~~--gl~-~~v~ii~gD~~~~l~~~~~~~~~~~ 230 (317)
..++||++|||.|.+..++++. +..+|+.||+|+.++ +.+++.+... +++ ++++++.+|+..++... .++
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi-~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~-----~~~ 164 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVI-DVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNA-----PEG 164 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHH-HHHHHhhhhhccccCCCceEEEEChHHHHHhhc-----cCC
Confidence 5789999999999999988875 356899999999999 9999987653 233 58999999999988643 136
Q ss_pred CccEEEECCCCCCc----c-HHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 231 PFDYMSVTPPYTAV----D-YEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 231 ~fDlV~~dPPy~~~----~-~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
+||+||+|.+-..+ . ..+.++.+. +.|+|||++++...
T Consensus 165 ~yDvIi~D~~dp~~~~~~L~t~ef~~~~~--~~L~pgGvlv~q~~ 207 (308)
T PLN02366 165 TYDAIIVDSSDPVGPAQELFEKPFFESVA--RALRPGGVVCTQAE 207 (308)
T ss_pred CCCEEEEcCCCCCCchhhhhHHHHHHHHH--HhcCCCcEEEECcC
Confidence 79999998643211 1 234555554 48999999987543
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.05 E-value=4e-09 Score=95.18 Aligned_cols=116 Identities=22% Similarity=0.289 Sum_probs=80.7
Q ss_pred hHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEE
Q 021116 133 MEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHT 212 (317)
Q Consensus 133 ~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~ 212 (317)
.+.+...+++++.... ..++.+|||+|||+|.++..+++.+. +|+++|+++.++ +.|++++...+..++++++.
T Consensus 45 ~~~~~~~~~~~l~~~~----~~~~~~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i-~~a~~~~~~~~~~~~i~~~~ 118 (230)
T PRK07580 45 HQRMRDTVLSWLPADG----DLTGLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMV-EEARERAPEAGLAGNITFEV 118 (230)
T ss_pred HHHHHHHHHHHHHhcC----CCCCCEEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHH-HHHHHHHHhcCCccCcEEEE
Confidence 3445556666665411 13578999999999999998888876 599999999999 99999998888766789999
Q ss_pred ecHHHHHHHHhhhcCCCCCccEEEECCCC-CC--ccHHHHHHHHHHcCCcCCCeEEEE
Q 021116 213 VRVETFLERAEQFVGKDGPFDYMSVTPPY-TA--VDYEVLMAQISKSALVGKDSFIVV 267 (317)
Q Consensus 213 gD~~~~l~~~~~~~~~~~~fDlV~~dPPy-~~--~~~~~~l~~L~~~~lLkpgG~ivv 267 (317)
+|+... .++||+|++.-.+ +. ......++.+.. ++ +++.++.
T Consensus 119 ~d~~~~----------~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~--~~-~~~~~i~ 163 (230)
T PRK07580 119 GDLESL----------LGRFDTVVCLDVLIHYPQEDAARMLAHLAS--LT-RGSLIFT 163 (230)
T ss_pred cCchhc----------cCCcCEEEEcchhhcCCHHHHHHHHHHHHh--hc-CCeEEEE
Confidence 994321 3679999975433 21 133445555542 33 4444443
|
|
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.7e-10 Score=105.74 Aligned_cols=107 Identities=18% Similarity=0.169 Sum_probs=80.3
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCC-----ceEEEEecHHHHHHHHhhhcCCC
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLD-----VSSIHTVRVETFLERAEQFVGKD 229 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~-----~v~ii~gD~~~~l~~~~~~~~~~ 229 (317)
.|.+|||+|||+|.++..+++.|+ .|+|||.++.++ +.|++.....-..+ ++++...|++.. .
T Consensus 89 ~g~~ilDvGCGgGLLSepLArlga-~V~GID~s~~~V-~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~----------~ 156 (282)
T KOG1270|consen 89 LGMKILDVGCGGGLLSEPLARLGA-QVTGIDASDDMV-EVANEHKKMDPVLEGAIAYRLEYEDTDVEGL----------T 156 (282)
T ss_pred CCceEEEeccCccccchhhHhhCC-eeEeecccHHHH-HHHHHhhhcCchhccccceeeehhhcchhhc----------c
Confidence 468899999999999999999986 699999999999 99999865544433 255666676654 3
Q ss_pred CCccEEEECCCCC-CccHHHHHHHHHHcCCcCCCeEEEEEeCCCCCc
Q 021116 230 GPFDYMSVTPPYT-AVDYEVLMAQISKSALVGKDSFIVVEYPLRTDM 275 (317)
Q Consensus 230 ~~fDlV~~dPPy~-~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~~~l 275 (317)
+.||.|++---+. ..+..+.++.+.+ +|+|||.+++..-.++-+
T Consensus 157 ~~fDaVvcsevleHV~dp~~~l~~l~~--~lkP~G~lfittinrt~l 201 (282)
T KOG1270|consen 157 GKFDAVVCSEVLEHVKDPQEFLNCLSA--LLKPNGRLFITTINRTIL 201 (282)
T ss_pred cccceeeeHHHHHHHhCHHHHHHHHHH--HhCCCCceEeeehhhhHH
Confidence 6799999853221 1234556666654 899999999998766543
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=1e-09 Score=102.39 Aligned_cols=89 Identities=17% Similarity=0.152 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEe
Q 021116 134 EVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTV 213 (317)
Q Consensus 134 ~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~g 213 (317)
..+.+.+.+.+.. .++.+|||+|||+|.++..++.++ .+|+++|+|+.++ +.+++|++. .++++++++
T Consensus 15 ~~~~~~iv~~~~~-------~~~~~VLEIG~G~G~lt~~L~~~~-~~v~~vEid~~~~-~~l~~~~~~---~~~v~ii~~ 82 (258)
T PRK14896 15 DRVVDRIVEYAED-------TDGDPVLEIGPGKGALTDELAKRA-KKVYAIELDPRLA-EFLRDDEIA---AGNVEIIEG 82 (258)
T ss_pred HHHHHHHHHhcCC-------CCcCeEEEEeCccCHHHHHHHHhC-CEEEEEECCHHHH-HHHHHHhcc---CCCEEEEEe
Confidence 4455666665543 357899999999999999988885 4799999999998 999988764 246999999
Q ss_pred cHHHHHHHHhhhcCCCCCccEEEECCCCCC
Q 021116 214 RVETFLERAEQFVGKDGPFDYMSVTPPYTA 243 (317)
Q Consensus 214 D~~~~l~~~~~~~~~~~~fDlV~~dPPy~~ 243 (317)
|+.++. ...||.|+.|+||..
T Consensus 83 D~~~~~---------~~~~d~Vv~NlPy~i 103 (258)
T PRK14896 83 DALKVD---------LPEFNKVVSNLPYQI 103 (258)
T ss_pred ccccCC---------chhceEEEEcCCccc
Confidence 987642 145899999999975
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.03 E-value=4.2e-09 Score=102.19 Aligned_cols=118 Identities=11% Similarity=0.014 Sum_probs=84.1
Q ss_pred ChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEE
Q 021116 132 MMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSI 210 (317)
Q Consensus 132 t~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~-Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~i 210 (317)
..+.++..+++.+... .++.+|||+|||+|.+++.+++. +..+|+++|.++.++ +.|++|... +++++
T Consensus 96 ~~e~~r~~~l~~~~l~------~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL-~~A~~k~~~----~~i~~ 164 (340)
T PLN02490 96 WTEDMRDDALEPADLS------DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQL-AKAKQKEPL----KECKI 164 (340)
T ss_pred chHHHHHHHHhhcccC------CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHH-HHHHHhhhc----cCCeE
Confidence 3455555555444321 35679999999999999877654 445899999999999 999988652 24788
Q ss_pred EEecHHHHHHHHhhhcCCCCCccEEEECCCCC-CccHHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 211 HTVRVETFLERAEQFVGKDGPFDYMSVTPPYT-AVDYEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 211 i~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~-~~~~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
+.+|+.+.. ...+.||+|+++.... ..+.+..++.+. ++|+|||.+++..
T Consensus 165 i~gD~e~lp-------~~~~sFDvVIs~~~L~~~~d~~~~L~e~~--rvLkPGG~LvIi~ 215 (340)
T PLN02490 165 IEGDAEDLP-------FPTDYADRYVSAGSIEYWPDPQRGIKEAY--RVLKIGGKACLIG 215 (340)
T ss_pred EeccHHhCC-------CCCCceeEEEEcChhhhCCCHHHHHHHHH--HhcCCCcEEEEEE
Confidence 999987641 2346899999976543 234556666665 5899999987754
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.8e-09 Score=100.56 Aligned_cols=105 Identities=12% Similarity=0.113 Sum_probs=81.4
Q ss_pred CCCeEEEECCCcchH-HHHHH-Hc-CCCEEEEEeCCHHHHHHHHHHhHHH-hCCCCceEEEEecHHHHHHHHhhhcCCCC
Q 021116 155 RPGRWLDLYSGTGSV-GIEAI-SR-GCSEVHFVEMDPWVVSNVLIPNLEW-TGFLDVSSIHTVRVETFLERAEQFVGKDG 230 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l-~Ieaa-s~-Ga~~V~aVDin~~al~~~ar~N~~~-~gl~~~v~ii~gD~~~~l~~~~~~~~~~~ 230 (317)
.+++|+|+|||.|.+ ++.++ .. ...+++++|+|++++ +.|+++++. .++.++++|..+|+.+.... .+
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai-~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~-------l~ 194 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSAN-DVARRLVSSDPDLSKRMFFHTADVMDVTES-------LK 194 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHH-HHHHHHhhhccCccCCcEEEECchhhcccc-------cC
Confidence 578999999998744 33333 22 345799999999999 999999964 88888999999999875321 26
Q ss_pred CccEEEECCCC--CCccHHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 231 PFDYMSVTPPY--TAVDYEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 231 ~fDlV~~dPPy--~~~~~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
.||+||++-=. .+....++++.+. +.|+|||++++..
T Consensus 195 ~FDlVF~~ALi~~dk~~k~~vL~~l~--~~LkPGG~Lvlr~ 233 (296)
T PLN03075 195 EYDVVFLAALVGMDKEEKVKVIEHLG--KHMAPGALLMLRS 233 (296)
T ss_pred CcCEEEEecccccccccHHHHHHHHH--HhcCCCcEEEEec
Confidence 79999998321 1357788888887 4899999999985
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=5e-09 Score=103.23 Aligned_cols=101 Identities=15% Similarity=0.130 Sum_probs=77.2
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
.++.+|||+|||+|.+++.+++....+|+++|++++++ +.|+++++ ++ .+++...|+.+. .++||
T Consensus 166 ~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l-~~A~~~~~--~l--~v~~~~~D~~~l----------~~~fD 230 (383)
T PRK11705 166 KPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQ-KLAQERCA--GL--PVEIRLQDYRDL----------NGQFD 230 (383)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHH-HHHHHHhc--cC--eEEEEECchhhc----------CCCCC
Confidence 36789999999999999988775334799999999999 99999885 33 277888887543 26899
Q ss_pred EEEECCCCCC---ccHHHHHHHHHHcCCcCCCeEEEEEeCC
Q 021116 234 YMSVTPPYTA---VDYEVLMAQISKSALVGKDSFIVVEYPL 271 (317)
Q Consensus 234 lV~~dPPy~~---~~~~~~l~~L~~~~lLkpgG~ivv~~~~ 271 (317)
.|++...+.. ..++..++.+. ++|+|||++++....
T Consensus 231 ~Ivs~~~~ehvg~~~~~~~l~~i~--r~LkpGG~lvl~~i~ 269 (383)
T PRK11705 231 RIVSVGMFEHVGPKNYRTYFEVVR--RCLKPDGLFLLHTIG 269 (383)
T ss_pred EEEEeCchhhCChHHHHHHHHHHH--HHcCCCcEEEEEEcc
Confidence 9998655432 13456666665 589999999987643
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=5.3e-09 Score=95.06 Aligned_cols=105 Identities=16% Similarity=0.158 Sum_probs=82.2
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
.++.+|||+|||+|.++..+++.++ +++++|.++.++ +.+++|+...+. +++++..|+.++.... .+.||
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~-~~a~~~~~~~~~--~~~~~~~~~~~~~~~~------~~~fD 116 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARLGA-DVTGIDASEENI-EVARLHALESGL--KIDYRQTTAEELAAEH------PGQFD 116 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHcCC-eEEEEcCCHHHH-HHHHHHHHHcCC--ceEEEecCHHHhhhhc------CCCcc
Confidence 4678999999999999988888775 699999999998 999999887765 3788889987765321 36899
Q ss_pred EEEECCCCC-CccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 234 YMSVTPPYT-AVDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 234 lV~~dPPy~-~~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
+|++.-.+. ..+...+++.+. ++|++||++++...
T Consensus 117 ~Ii~~~~l~~~~~~~~~l~~~~--~~L~~gG~l~v~~~ 152 (233)
T PRK05134 117 VVTCMEMLEHVPDPASFVRACA--KLVKPGGLVFFSTL 152 (233)
T ss_pred EEEEhhHhhccCCHHHHHHHHH--HHcCCCcEEEEEec
Confidence 999864432 234566666665 48999999998754
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.6e-09 Score=103.20 Aligned_cols=108 Identities=23% Similarity=0.317 Sum_probs=81.1
Q ss_pred CCCCeEEEECCCcchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHhHH-----HhCC-CCceEEEEecHHHHHHHHhhhc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLE-----WTGF-LDVSSIHTVRVETFLERAEQFV 226 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~G-a~~V~aVDin~~al~~~ar~N~~-----~~gl-~~~v~ii~gD~~~~l~~~~~~~ 226 (317)
...++||++|||+|....++++.. ..+|++||+|++++ +.|+++.. ...+ .++++++.+|+.+++...
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVI-elAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~---- 223 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMI-NMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSP---- 223 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHH-HHHHhccccchhccccCCCCceEEEECcHHHHHHhc----
Confidence 356799999999999888888754 57899999999999 99996311 1122 367999999999998653
Q ss_pred CCCCCccEEEECCCCCCc-----cH-HHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 227 GKDGPFDYMSVTPPYTAV-----DY-EVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 227 ~~~~~fDlV~~dPPy~~~-----~~-~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
.+.||+||+|.|-... .+ .+.++.+. +.|+|||++++...
T Consensus 224 --~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~--~~LkPgGV~V~Qs~ 269 (374)
T PRK01581 224 --SSLYDVIIIDFPDPATELLSTLYTSELFARIA--TFLTEDGAFVCQSN 269 (374)
T ss_pred --CCCccEEEEcCCCccccchhhhhHHHHHHHHH--HhcCCCcEEEEecC
Confidence 4689999999764221 22 44555554 48999999988754
|
|
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.01 E-value=6.9e-09 Score=99.81 Aligned_cols=120 Identities=16% Similarity=0.136 Sum_probs=81.4
Q ss_pred CCCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCC----
Q 021116 129 VRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGF---- 204 (317)
Q Consensus 129 ~rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl---- 204 (317)
.++..+...+.+.+++.... +.++.+|||+|||+|.+++.++.+|. +|+++|+++.++ +.+++|++..+.
T Consensus 122 ~~~~~~~~v~~~l~~l~~~~----~~~~~~VLDlGcGtG~~a~~la~~g~-~V~gvD~S~~ml-~~A~~~~~~~~~~~~~ 195 (315)
T PLN02585 122 IRLGHAQTVEKVLLWLAEDG----SLAGVTVCDAGCGTGSLAIPLALEGA-IVSASDISAAMV-AEAERRAKEALAALPP 195 (315)
T ss_pred cccChHHHHHHHHHHHHhcC----CCCCCEEEEecCCCCHHHHHHHHCCC-EEEEEECCHHHH-HHHHHHHHhccccccc
Confidence 35555566667777775421 13578999999999999999888875 799999999999 999999876521
Q ss_pred CCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCC-CCc--cHHHHHHHHHHcCCcCCCeEEEE
Q 021116 205 LDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPY-TAV--DYEVLMAQISKSALVGKDSFIVV 267 (317)
Q Consensus 205 ~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy-~~~--~~~~~l~~L~~~~lLkpgG~ivv 267 (317)
..++++..+|+.++ +++||+|++.-.. +.. ....++..+. .+.++++++.
T Consensus 196 ~~~~~f~~~Dl~~l----------~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~---~l~~g~liIs 248 (315)
T PLN02585 196 EVLPKFEANDLESL----------SGKYDTVTCLDVLIHYPQDKADGMIAHLA---SLAEKRLIIS 248 (315)
T ss_pred ccceEEEEcchhhc----------CCCcCEEEEcCEEEecCHHHHHHHHHHHH---hhcCCEEEEE
Confidence 13478888887543 3689999864221 211 1233444443 3456666553
|
|
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.4e-09 Score=98.23 Aligned_cols=117 Identities=13% Similarity=0.128 Sum_probs=85.8
Q ss_pred HHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHc-CC------CEEEEEeCCHHHHHHHHHHhHHHhCCCCc--
Q 021116 137 KGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-GC------SEVHFVEMDPWVVSNVLIPNLEWTGFLDV-- 207 (317)
Q Consensus 137 ~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~-Ga------~~V~aVDin~~al~~~ar~N~~~~gl~~~-- 207 (317)
+....++|.+ ..+.++||++||||-+++-.+.. +. .+|+.+|+||+++ +.+++.+...++.+.
T Consensus 89 Kd~~v~~L~p-------~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL-~vgkqRa~~~~l~~~~~ 160 (296)
T KOG1540|consen 89 KDMFVSKLGP-------GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHML-AVGKQRAKKRPLKASSR 160 (296)
T ss_pred HHHhhhccCC-------CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHH-HHHHHHHhhcCCCcCCc
Confidence 3344455654 46799999999999999876642 22 6899999999999 999988877777654
Q ss_pred eEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCc---cHHHHHHHHHHcCCcCCCeEEEEEeCCC
Q 021116 208 SSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAV---DYEVLMAQISKSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 208 v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~---~~~~~l~~L~~~~lLkpgG~ivv~~~~~ 272 (317)
+.++++|+++. |.++.+||...+- |+-. +.++.++.. +|+|||||++.+-.-+.
T Consensus 161 ~~w~~~dAE~L-------pFdd~s~D~yTia--fGIRN~th~~k~l~EA--YRVLKpGGrf~cLeFsk 217 (296)
T KOG1540|consen 161 VEWVEGDAEDL-------PFDDDSFDAYTIA--FGIRNVTHIQKALREA--YRVLKPGGRFSCLEFSK 217 (296)
T ss_pred eEEEeCCcccC-------CCCCCcceeEEEe--cceecCCCHHHHHHHH--HHhcCCCcEEEEEEccc
Confidence 88999998864 4567899988875 3322 345555543 58999999987544333
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.00 E-value=4.8e-09 Score=99.71 Aligned_cols=135 Identities=17% Similarity=0.143 Sum_probs=93.1
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
..|++|||+|||.|..+..++.+|++.|+|+|-+...+ ...+-=.+..|.+..+..+..-+++. +. .+.||
T Consensus 114 L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~-~QF~~i~~~lg~~~~~~~lplgvE~L-------p~-~~~FD 184 (315)
T PF08003_consen 114 LKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFY-LQFEAIKHFLGQDPPVFELPLGVEDL-------PN-LGAFD 184 (315)
T ss_pred cCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHH-HHHHHHHHHhCCCccEEEcCcchhhc-------cc-cCCcC
Confidence 68999999999999999999999999999999999876 44333223344433333332233332 12 37899
Q ss_pred EEEE-CCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCCCCCccccCCCeEEEEEeecCceEEEEEeechh
Q 021116 234 YMSV-TPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDRRFGRTHLAIYGPDWA 303 (317)
Q Consensus 234 lV~~-dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~~~l~~~~~~~~~~~~r~yG~~~l~~~~p~~~ 303 (317)
+||+ .-=|+..+--+.+..+.+ .|++||.+++++-.... ......+=+.+|.+..=.||-|+.+
T Consensus 185 tVF~MGVLYHrr~Pl~~L~~Lk~--~L~~gGeLvLETlvi~g----~~~~~L~P~~rYa~m~nv~FiPs~~ 249 (315)
T PF08003_consen 185 TVFSMGVLYHRRSPLDHLKQLKD--SLRPGGELVLETLVIDG----DENTVLVPEDRYAKMRNVWFIPSVA 249 (315)
T ss_pred EEEEeeehhccCCHHHHHHHHHH--hhCCCCEEEEEEeeecC----CCceEEccCCcccCCCceEEeCCHH
Confidence 9996 445776666667777764 79999999998764332 2334445567888877677766654
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=98.99 E-value=4.4e-09 Score=99.98 Aligned_cols=103 Identities=11% Similarity=0.085 Sum_probs=77.6
Q ss_pred CCCeEEEECCCcchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
++.+|||+|||+|.++++++++. ..+++++|. +.++ +.+++|++..|+.++++++.+|+.+.. -+.+|
T Consensus 149 ~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~-~~a~~~~~~~gl~~rv~~~~~d~~~~~---------~~~~D 217 (306)
T TIGR02716 149 GVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAI-DLVNENAAEKGVADRMRGIAVDIYKES---------YPEAD 217 (306)
T ss_pred CCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHH-HHHHHHHHhCCccceEEEEecCccCCC---------CCCCC
Confidence 46799999999999999988764 347999998 7888 999999999999889999999986421 13479
Q ss_pred EEEECC-CCCCcc--HHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 234 YMSVTP-PYTAVD--YEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 234 lV~~dP-Py~~~~--~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
+|++.- .+.... ...+++.+. +.|+|||++++...
T Consensus 218 ~v~~~~~lh~~~~~~~~~il~~~~--~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 218 AVLFCRILYSANEQLSTIMCKKAF--DAMRSGGRLLILDM 255 (306)
T ss_pred EEEeEhhhhcCChHHHHHHHHHHH--HhcCCCCEEEEEEe
Confidence 887642 222211 234455544 58999999987753
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=98.98 E-value=9.9e-10 Score=104.35 Aligned_cols=103 Identities=18% Similarity=0.133 Sum_probs=69.6
Q ss_pred CCCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHc--------CCCEEEEEeCCHHHHHHHHHHhHH
Q 021116 129 VRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR--------GCSEVHFVEMDPWVVSNVLIPNLE 200 (317)
Q Consensus 129 ~rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~--------Ga~~V~aVDin~~al~~~ar~N~~ 200 (317)
...|...+.+.+..++.. ..+.+|+|+|||+|.+.+++... ...+++|+|+++.++ .+|+.|+.
T Consensus 27 ~~~TP~~i~~l~~~~~~~-------~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~-~la~~nl~ 98 (311)
T PF02384_consen 27 QFYTPREIVDLMVKLLNP-------KKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAV-ALAKLNLL 98 (311)
T ss_dssp GC---HHHHHHHHHHHTT--------TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHH-HHHHHHHH
T ss_pred eeehHHHHHHHHHhhhhc-------cccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHH-HHHHhhhh
Confidence 345677788888888854 35778999999999999987652 345799999999998 99999998
Q ss_pred HhCCCCc-eEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCc
Q 021116 201 WTGFLDV-SSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAV 244 (317)
Q Consensus 201 ~~gl~~~-v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~ 244 (317)
..|.... ..+..+|....... .....||+|++||||...
T Consensus 99 l~~~~~~~~~i~~~d~l~~~~~-----~~~~~~D~ii~NPPf~~~ 138 (311)
T PF02384_consen 99 LHGIDNSNINIIQGDSLENDKF-----IKNQKFDVIIGNPPFGSK 138 (311)
T ss_dssp HTTHHCBGCEEEES-TTTSHSC-----TST--EEEEEEE--CTCE
T ss_pred hhcccccccccccccccccccc-----ccccccccccCCCCcccc
Confidence 7776533 35788886543211 013689999999999754
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.2e-09 Score=107.68 Aligned_cols=100 Identities=16% Similarity=0.164 Sum_probs=72.7
Q ss_pred CCeEEEECCCcchHHHHHHHcC-----CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCC
Q 021116 156 PGRWLDLYSGTGSVGIEAISRG-----CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDG 230 (317)
Q Consensus 156 ~~rVLDlgcGtG~l~Ieaas~G-----a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~ 230 (317)
+..|+|+|||+|.+...+++.| +.+|+|||.|+.|+ ..+++-++.++..++|+++++|++++.. ..
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~-~~l~~~v~~n~w~~~V~vi~~d~r~v~l--------pe 257 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAV-VTLQKRVNANGWGDKVTVIHGDMREVEL--------PE 257 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHH-HHHHHHHHHTTTTTTEEEEES-TTTSCH--------SS
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHH-HHHHHHHHhcCCCCeEEEEeCcccCCCC--------CC
Confidence 6789999999999998776654 57999999999997 6666666889999999999999998742 36
Q ss_pred CccEEEECCC--CCC-ccHHHHHHHHHHcCCcCCCeEEE
Q 021116 231 PFDYMSVTPP--YTA-VDYEVLMAQISKSALVGKDSFIV 266 (317)
Q Consensus 231 ~fDlV~~dPP--y~~-~~~~~~l~~L~~~~lLkpgG~iv 266 (317)
+.|+|+.-.- |+. ....+.++.. .++|+|+|+++
T Consensus 258 kvDIIVSElLGsfg~nEl~pE~Lda~--~rfLkp~Gi~I 294 (448)
T PF05185_consen 258 KVDIIVSELLGSFGDNELSPECLDAA--DRFLKPDGIMI 294 (448)
T ss_dssp -EEEEEE---BTTBTTTSHHHHHHHG--GGGEEEEEEEE
T ss_pred ceeEEEEeccCCccccccCHHHHHHH--HhhcCCCCEEe
Confidence 8999998653 211 1334555443 37999999976
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.2e-08 Score=91.79 Aligned_cols=103 Identities=14% Similarity=0.132 Sum_probs=77.8
Q ss_pred CCCeEEEECCCcchHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGC-SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga-~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
.+.+|||+|||+|.++..++..+. .+++++|+++.++ +.++++.. ++++++.+|+.+.. ...++||
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~-~~~~~~~~-----~~~~~~~~d~~~~~-------~~~~~fD 100 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGML-AQAKTKLS-----ENVQFICGDAEKLP-------LEDSSFD 100 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHH-HHHHHhcC-----CCCeEEecchhhCC-------CCCCcee
Confidence 457899999999999998877653 4689999999998 88877654 24788999987642 1346899
Q ss_pred EEEECCCCCC-ccHHHHHHHHHHcCCcCCCeEEEEEeCCC
Q 021116 234 YMSVTPPYTA-VDYEVLMAQISKSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 234 lV~~dPPy~~-~~~~~~l~~L~~~~lLkpgG~ivv~~~~~ 272 (317)
+|+++-..+. .+....++.+. ++|+|||++++.....
T Consensus 101 ~vi~~~~l~~~~~~~~~l~~~~--~~L~~~G~l~~~~~~~ 138 (240)
T TIGR02072 101 LIVSNLALQWCDDLSQALSELA--RVLKPGGLLAFSTFGP 138 (240)
T ss_pred EEEEhhhhhhccCHHHHHHHHH--HHcCCCcEEEEEeCCc
Confidence 9999755432 24566666665 5899999999876543
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=6.4e-09 Score=94.24 Aligned_cols=106 Identities=11% Similarity=0.025 Sum_probs=69.9
Q ss_pred CCCCeEEEECCCcchHHHHHHHcC--CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHH--HHHhhhcCCC
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRG--CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL--ERAEQFVGKD 229 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~G--a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l--~~~~~~~~~~ 229 (317)
.++.+|||+|||+|.++..++.+. ..+|++||+++ +. +..+ ++++++|+.+.. ..+.. ....
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~-----------~~~~-v~~i~~D~~~~~~~~~i~~-~~~~ 115 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MD-----------PIVG-VDFLQGDFRDELVLKALLE-RVGD 115 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-cc-----------CCCC-cEEEecCCCChHHHHHHHH-HhCC
Confidence 357899999999999998887763 24799999988 21 1223 789999987642 11100 1124
Q ss_pred CCccEEEECC-CCCCcc----H-------HHHHHHHHHcCCcCCCeEEEEEeCCCCCc
Q 021116 230 GPFDYMSVTP-PYTAVD----Y-------EVLMAQISKSALVGKDSFIVVEYPLRTDM 275 (317)
Q Consensus 230 ~~fDlV~~dP-Py~~~~----~-------~~~l~~L~~~~lLkpgG~ivv~~~~~~~l 275 (317)
+.||+|++|+ |+..+. . +..++.+ .++|+|||.+++.....+.+
T Consensus 116 ~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~--~~~LkpGG~~vi~~~~~~~~ 171 (209)
T PRK11188 116 SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMC--RDVLAPGGSFVVKVFQGEGF 171 (209)
T ss_pred CCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHH--HHHcCCCCEEEEEEecCcCH
Confidence 6899999987 443221 1 2233333 36899999999966544443
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=98.95 E-value=9.8e-09 Score=95.56 Aligned_cols=112 Identities=17% Similarity=0.058 Sum_probs=81.0
Q ss_pred CCCCeEEEECCCcchHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCC
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGP 231 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~-G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~ 231 (317)
.+|.+|||-|+|||+++..+++. | ..+|+..|.+++.+ +.|++|++.+|+.+++++.+.|+.+.-... .....
T Consensus 39 ~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~-~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~----~~~~~ 113 (247)
T PF08704_consen 39 RPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRA-EKARKNFERHGLDDNVTVHHRDVCEEGFDE----ELESD 113 (247)
T ss_dssp -TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHH-HHHHHHHHHTTCCTTEEEEES-GGCG--ST----T-TTS
T ss_pred CCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHH-HHHHHHHHHcCCCCCceeEecceecccccc----cccCc
Confidence 47999999999999999977652 2 45899999999998 999999999999888999999986421100 01357
Q ss_pred ccEEEECCCCCCccHHHHHHHHHHcCCc-CCCeEEEEEeCCCCCcc
Q 021116 232 FDYMSVTPPYTAVDYEVLMAQISKSALV-GKDSFIVVEYPLRTDML 276 (317)
Q Consensus 232 fDlV~~dPPy~~~~~~~~l~~L~~~~lL-kpgG~ivv~~~~~~~l~ 276 (317)
+|.||+|.|--+.-++.+.+ .| ++||++.+..+.-+++.
T Consensus 114 ~DavfLDlp~Pw~~i~~~~~------~L~~~gG~i~~fsP~ieQv~ 153 (247)
T PF08704_consen 114 FDAVFLDLPDPWEAIPHAKR------ALKKPGGRICCFSPCIEQVQ 153 (247)
T ss_dssp EEEEEEESSSGGGGHHHHHH------HE-EEEEEEEEEESSHHHHH
T ss_pred ccEEEEeCCCHHHHHHHHHH------HHhcCCceEEEECCCHHHHH
Confidence 99999998854333333332 47 89999999888666543
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=98.94 E-value=8.5e-09 Score=104.04 Aligned_cols=81 Identities=20% Similarity=0.227 Sum_probs=67.9
Q ss_pred CCCCeEEEECCCcchHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCC
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGP 231 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~--Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~ 231 (317)
.++.+|||+|||.|.-+..+++. +...|+++|+++..+ +.+++|+++.|+.+ +.+.+.|...+...+ ...
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~-~~L~~nl~r~G~~n-v~v~~~D~~~~~~~~------~~~ 183 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRV-KVLHANISRCGVSN-VALTHFDGRVFGAAL------PET 183 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHH-HHHHHHHHHcCCCe-EEEEeCchhhhhhhc------hhh
Confidence 46889999999999999887653 235799999999998 99999999999965 888999987654332 257
Q ss_pred ccEEEECCCCC
Q 021116 232 FDYMSVTPPYT 242 (317)
Q Consensus 232 fDlV~~dPPy~ 242 (317)
||.|++|+|..
T Consensus 184 fD~ILvDaPCS 194 (470)
T PRK11933 184 FDAILLDAPCS 194 (470)
T ss_pred cCeEEEcCCCC
Confidence 99999999986
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=5.7e-09 Score=108.08 Aligned_cols=106 Identities=8% Similarity=0.001 Sum_probs=78.0
Q ss_pred CCCeEEEECCCcchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~-Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
++.+|||+|||+|.++..++.. ...+|+++|+++.++ +.|++++...+. +++++++|+.+....+ .+++||
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~ML-e~Ararl~~~g~--~ie~I~gDa~dLp~~f-----edeSFD 489 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVI-DTLKKKKQNEGR--SWNVIKGDAINLSSSF-----EKESVD 489 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHhhhcCC--CeEEEEcchHhCcccc-----CCCCEE
Confidence 5789999999999998776653 335899999999999 999998776553 4788999987642111 246899
Q ss_pred EEEECCCCCC--------------ccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 234 YMSVTPPYTA--------------VDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 234 lV~~dPPy~~--------------~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
+|+++++++. ......++.+. +.|+|||.+++...
T Consensus 490 vVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~--RVLKPGGrLII~D~ 538 (677)
T PRK06922 490 TIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAY--EVLKPGGRIIIRDG 538 (677)
T ss_pred EEEEchHHHhhhhhcccccccccHHHHHHHHHHHH--HHcCCCcEEEEEeC
Confidence 9999876541 01233444433 68999999999754
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.2e-08 Score=91.82 Aligned_cols=105 Identities=15% Similarity=0.131 Sum_probs=81.7
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccE
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDl 234 (317)
.+.+|||+|||+|.++..+++.+. +++++|.++.++ +.+++|+...+.. ++++..+|+.++... ..++||+
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~-~v~~iD~s~~~~-~~a~~~~~~~~~~-~~~~~~~d~~~~~~~------~~~~~D~ 115 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGA-NVTGIDASEENI-EVAKLHAKKDPLL-KIEYRCTSVEDLAEK------GAKSFDV 115 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHH-HHHHHHHHHcCCC-ceEEEeCCHHHhhcC------CCCCccE
Confidence 478999999999999998877765 599999999998 9999999887763 488899998876422 1368999
Q ss_pred EEECCCCC-CccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 235 MSVTPPYT-AVDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 235 V~~dPPy~-~~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
|+++-... ..+....++.+. +.|++||.+++...
T Consensus 116 i~~~~~l~~~~~~~~~l~~~~--~~L~~gG~l~i~~~ 150 (224)
T TIGR01983 116 VTCMEVLEHVPDPQAFIRACA--QLLKPGGILFFSTI 150 (224)
T ss_pred EEehhHHHhCCCHHHHHHHHH--HhcCCCcEEEEEec
Confidence 99864332 235566666665 48999999887654
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=98.93 E-value=2e-08 Score=95.72 Aligned_cols=115 Identities=10% Similarity=-0.055 Sum_probs=76.4
Q ss_pred CCCeEEEECCCcchHHHHHHHcC--CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCc
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRG--CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF 232 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~G--a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~f 232 (317)
++.+|||+|||||..+..+++.. ..+++++|+|++++ +.+++++....-.-++..+++|+.+.+...... .....
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL-~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~--~~~~~ 139 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADAL-KESAAALAADYPQLEVHGICADFTQPLALPPEP--AAGRR 139 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHH-HHHHHHHHhhCCCceEEEEEEcccchhhhhccc--ccCCe
Confidence 46799999999999999877664 35799999999999 999998765322224777899987654322100 00123
Q ss_pred cEEEECCCCCCccHHH---HHHHHHHcCCcCCCeEEEEEeCCCCC
Q 021116 233 DYMSVTPPYTAVDYEV---LMAQISKSALVGKDSFIVVEYPLRTD 274 (317)
Q Consensus 233 DlV~~dPPy~~~~~~~---~l~~L~~~~lLkpgG~ivv~~~~~~~ 274 (317)
.+++++-+.+.-..++ .++.+. +.|+|||.+++..+....
T Consensus 140 ~~~~~gs~~~~~~~~e~~~~L~~i~--~~L~pgG~~lig~d~~~~ 182 (301)
T TIGR03438 140 LGFFPGSTIGNFTPEEAVAFLRRIR--QLLGPGGGLLIGVDLVKD 182 (301)
T ss_pred EEEEecccccCCCHHHHHHHHHHHH--HhcCCCCEEEEeccCCCC
Confidence 4555665543223333 344443 589999999987654433
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.6e-09 Score=93.80 Aligned_cols=113 Identities=19% Similarity=0.256 Sum_probs=77.1
Q ss_pred CeEEEECCCcchHHHHHHHcCCC-EEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHH--HHHHhhhcCCCCCcc
Q 021116 157 GRWLDLYSGTGSVGIEAISRGCS-EVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF--LERAEQFVGKDGPFD 233 (317)
Q Consensus 157 ~rVLDlgcGtG~l~Ieaas~Ga~-~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~--l~~~~~~~~~~~~fD 233 (317)
.+|||||||.|.+-..+++.|.. ..++||.++.++ ++|+.-+++.+++|.|++.+.|+.+- ....-.+....+.+|
T Consensus 69 ~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV-~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~D 147 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAV-ELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLD 147 (227)
T ss_pred cceeeccCCchHHHHHHHHhcCCCCccccccCHHHH-HHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCcee
Confidence 49999999999999999998864 499999999999 99887788899998899999998763 111001122334555
Q ss_pred EEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEE-EeCCC
Q 021116 234 YMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVV-EYPLR 272 (317)
Q Consensus 234 lV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv-~~~~~ 272 (317)
.|-+.|--..+.....++.+. ++|+|||++++ +|+-.
T Consensus 148 AisLs~d~~~~r~~~Y~d~v~--~ll~~~gifvItSCN~T 185 (227)
T KOG1271|consen 148 AISLSPDGPVGRLVVYLDSVE--KLLSPGGIFVITSCNFT 185 (227)
T ss_pred eeecCCCCcccceeeehhhHh--hccCCCcEEEEEecCcc
Confidence 555554211111112223332 47899999765 46543
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=98.91 E-value=8.3e-09 Score=103.71 Aligned_cols=104 Identities=14% Similarity=0.094 Sum_probs=75.4
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccE
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDl 234 (317)
.+.+|||+|||+|.++..++..+ .+|+++|+++.++ +.+++ .++..++++++++|+.+.. ++...++||+
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~~-~~v~giD~s~~~l-~~a~~---~~~~~~~i~~~~~d~~~~~-----~~~~~~~fD~ 106 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKKA-GQVIALDFIESVI-KKNES---INGHYKNVKFMCADVTSPD-----LNISDGSVDL 106 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhhC-CEEEEEeCCHHHH-HHHHH---HhccCCceEEEEecccccc-----cCCCCCCEEE
Confidence 46799999999999999887765 5799999999998 76543 3333356899999985421 1123468999
Q ss_pred EEECCCCCCcc---HHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 235 MSVTPPYTAVD---YEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 235 V~~dPPy~~~~---~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
|+++.++..-. ...+++.+. ++|+|||++++...
T Consensus 107 I~~~~~l~~l~~~~~~~~l~~~~--r~Lk~gG~l~~~d~ 143 (475)
T PLN02336 107 IFSNWLLMYLSDKEVENLAERMV--KWLKVGGYIFFRES 143 (475)
T ss_pred EehhhhHHhCCHHHHHHHHHHHH--HhcCCCeEEEEEec
Confidence 99987754321 344555554 68999999988643
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.6e-08 Score=90.12 Aligned_cols=103 Identities=17% Similarity=0.172 Sum_probs=77.0
Q ss_pred CCCeEEEECCCcchHHHHHHHcCC--CEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCc
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGC--SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF 232 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga--~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~f 232 (317)
++.+|||+|||+|.++..++..+. .+++++|+++.++ +.+++|.. ..++++++.+|+.+.. ...+.|
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~-~~~~~~~~---~~~~i~~~~~d~~~~~-------~~~~~~ 107 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEML-EVAKKKSE---LPLNIEFIQADAEALP-------FEDNSF 107 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHH-HHHHHHhc---cCCCceEEecchhcCC-------CCCCcE
Confidence 578999999999999988777654 3799999999998 99998875 2346889999987643 124679
Q ss_pred cEEEECCCCC-CccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 233 DYMSVTPPYT-AVDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 233 DlV~~dPPy~-~~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
|+|++.--.. ..+...+++.+. ++|+|||++++...
T Consensus 108 D~i~~~~~~~~~~~~~~~l~~~~--~~L~~gG~l~~~~~ 144 (223)
T TIGR01934 108 DAVTIAFGLRNVTDIQKALREMY--RVLKPGGRLVILEF 144 (223)
T ss_pred EEEEEeeeeCCcccHHHHHHHHH--HHcCCCcEEEEEEe
Confidence 9998753221 224555666654 58999999987543
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=98.90 E-value=8.6e-08 Score=93.01 Aligned_cols=107 Identities=17% Similarity=0.174 Sum_probs=82.0
Q ss_pred CCCeEEEECCCcchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHhHHHhC--C-CCceEEEEecHHHHHHHHhhhcCCCC
Q 021116 155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTG--F-LDVSSIHTVRVETFLERAEQFVGKDG 230 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~-Ga~~V~aVDin~~al~~~ar~N~~~~g--l-~~~v~ii~gD~~~~l~~~~~~~~~~~ 230 (317)
..++||.+|+|.|..+.++++. +..+|++||+|++.+ +.|++++..++ + +++++++.+|+.+++... .+
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv-~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~------~~ 175 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVV-DFCRKHLTVNREAFCDKRLELIINDARAELEKR------DE 175 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHH-HHHHHhcccccccccCCceEEEEChhHHHHhhC------CC
Confidence 4679999999999999998884 567899999999999 99999876542 2 367999999999998543 46
Q ss_pred CccEEEECCCC--CCc----cH-HHHHH-HHHHcCCcCCCeEEEEEeC
Q 021116 231 PFDYMSVTPPY--TAV----DY-EVLMA-QISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 231 ~fDlV~~dPPy--~~~----~~-~~~l~-~L~~~~lLkpgG~ivv~~~ 270 (317)
+||+||+|.+- ..+ .+ .+.++ .+. +.|+|||++++...
T Consensus 176 ~yDvIi~D~~dp~~~~~~~~Lyt~eF~~~~~~--~~L~p~Gvlv~q~~ 221 (336)
T PLN02823 176 KFDVIIGDLADPVEGGPCYQLYTKSFYERIVK--PKLNPGGIFVTQAG 221 (336)
T ss_pred CccEEEecCCCccccCcchhhccHHHHHHHHH--HhcCCCcEEEEecc
Confidence 89999999532 111 12 34444 443 58999999988754
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=98.89 E-value=9.4e-09 Score=93.57 Aligned_cols=102 Identities=16% Similarity=0.057 Sum_probs=70.1
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCC--------------CCceEEEEecHHHHHH
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGF--------------LDVSSIHTVRVETFLE 220 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl--------------~~~v~ii~gD~~~~l~ 220 (317)
++.+|||+|||.|.-++.++.+|. +|++||+++.++ +.+... +++ ..+++++++|+.++..
T Consensus 34 ~~~rvLd~GCG~G~da~~LA~~G~-~V~gvD~S~~Ai-~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~ 108 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWLAEQGH-RVLGVELSEIAV-EQFFAE---NGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTA 108 (213)
T ss_pred CCCeEEEeCCCchhHHHHHHhCCC-eEEEEeCCHHHH-HHHHHH---cCCCcceeccccceeeecCceEEEEccCCCCCc
Confidence 467999999999999999999998 599999999999 765331 111 1358899999877532
Q ss_pred HHhhhcCCCCCccEEEECCCCCC---ccHHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 221 RAEQFVGKDGPFDYMSVTPPYTA---VDYEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 221 ~~~~~~~~~~~fDlV~~dPPy~~---~~~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
.. .+.||.|+-.--+.. ...+..++.+. ++|+|||++++.+
T Consensus 109 ~~------~~~fD~i~D~~~~~~l~~~~R~~~~~~l~--~lLkpgG~~ll~~ 152 (213)
T TIGR03840 109 AD------LGPVDAVYDRAALIALPEEMRQRYAAHLL--ALLPPGARQLLIT 152 (213)
T ss_pred cc------CCCcCEEEechhhccCCHHHHHHHHHHHH--HHcCCCCeEEEEE
Confidence 11 256888875322211 12344555555 4899999755543
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.2e-08 Score=84.52 Aligned_cols=97 Identities=25% Similarity=0.322 Sum_probs=70.0
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
.++.+|||+|||+|.++..+...|. +++++|+++.++ +. .+......+...... ..+.||
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~-~~-----------~~~~~~~~~~~~~~~-------~~~~fD 80 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMI-EK-----------RNVVFDNFDAQDPPF-------PDGSFD 80 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHH-HH-----------TTSEEEEEECHTHHC-------HSSSEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHH-hh-----------hhhhhhhhhhhhhhc-------cccchh
Confidence 4688999999999999988888887 899999999998 55 112223332222211 247899
Q ss_pred EEEECCCC-CCccHHHHHHHHHHcCCcCCCeEEEEEeCCC
Q 021116 234 YMSVTPPY-TAVDYEVLMAQISKSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 234 lV~~dPPy-~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~ 272 (317)
+|++.--. +..+....++.+.+ +|+|||++++.....
T Consensus 81 ~i~~~~~l~~~~d~~~~l~~l~~--~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 81 LIICNDVLEHLPDPEEFLKELSR--LLKPGGYLVISDPNR 118 (161)
T ss_dssp EEEEESSGGGSSHHHHHHHHHHH--CEEEEEEEEEEEEBT
T ss_pred hHhhHHHHhhcccHHHHHHHHHH--hcCCCCEEEEEEcCC
Confidence 99986322 23356777777764 899999999988764
|
... |
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=4.6e-08 Score=89.59 Aligned_cols=96 Identities=15% Similarity=0.123 Sum_probs=68.5
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccE
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDl 234 (317)
.+.+|||+|||||.++..++.....+|+++|+++.|+ +.|+++. ..+++|+.+. +..+++||+
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml-~~a~~~~---------~~~~~d~~~l-------p~~d~sfD~ 113 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENML-KMNLVAD---------DKVVGSFEAL-------PFRDKSFDV 113 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHH-HHHHhcc---------ceEEechhhC-------CCCCCCEEE
Confidence 3679999999999999988776334799999999999 8887531 2467887653 334688999
Q ss_pred EEECCCCC-CccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 235 MSVTPPYT-AVDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 235 V~~dPPy~-~~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
|++.-..+ ..+.+..++.+. ++|+|. ..+++..
T Consensus 114 v~~~~~l~~~~d~~~~l~e~~--RvLkp~-~~ile~~ 147 (226)
T PRK05785 114 VMSSFALHASDNIEKVIAEFT--RVSRKQ-VGFIAMG 147 (226)
T ss_pred EEecChhhccCCHHHHHHHHH--HHhcCc-eEEEEeC
Confidence 99864322 235566666665 588984 3344443
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.2e-08 Score=102.14 Aligned_cols=110 Identities=13% Similarity=0.073 Sum_probs=73.0
Q ss_pred CCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcC---------CCEEEEEeCCHHHHHHHHHHhHH
Q 021116 130 RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRG---------CSEVHFVEMDPWVVSNVLIPNLE 200 (317)
Q Consensus 130 rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~G---------a~~V~aVDin~~al~~~ar~N~~ 200 (317)
..|...+++.+.+++....+........+|||+|||+|.+.+.++.+. ...++++|+|+.++ ..++.|+.
T Consensus 6 fyTP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~-~~a~~~l~ 84 (524)
T TIGR02987 6 FFTPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLL-KRAKKLLG 84 (524)
T ss_pred cCCcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHH-HHHHHHHh
Confidence 456677888888877442100000135699999999999999876432 14689999999999 99999998
Q ss_pred HhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCC
Q 021116 201 WTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTA 243 (317)
Q Consensus 201 ~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~ 243 (317)
.++. ..+.+.+.|......... ....+.||+|+.||||..
T Consensus 85 ~~~~-~~~~i~~~d~l~~~~~~~--~~~~~~fD~IIgNPPy~~ 124 (524)
T TIGR02987 85 EFAL-LEINVINFNSLSYVLLNI--ESYLDLFDIVITNPPYGR 124 (524)
T ss_pred hcCC-CCceeeeccccccccccc--ccccCcccEEEeCCCccc
Confidence 8762 124566666432210000 011257999999999974
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.84 E-value=6.6e-08 Score=88.43 Aligned_cols=110 Identities=19% Similarity=0.187 Sum_probs=87.1
Q ss_pred CCCCeEEEECCCcchHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCC
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGP 231 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~--Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~ 231 (317)
...+++||+|..||.-++..+.. -.++|+++|+|+.+. +.+.+=.+..|+.++++++++++.+.+.++.+ .+..++
T Consensus 72 ~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~-~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~-~~~~~t 149 (237)
T KOG1663|consen 72 LNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAY-EIGLELVKLAGVDHKITFIEGPALESLDELLA-DGESGT 149 (237)
T ss_pred hCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHH-HHhHHHHHhccccceeeeeecchhhhHHHHHh-cCCCCc
Confidence 35789999999999877753321 134799999999998 99999999999999999999999988877632 335678
Q ss_pred ccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 232 FDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 232 fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
||++|+|. .+.+|....+.+. +++++||+|++..
T Consensus 150 fDfaFvDa--dK~nY~~y~e~~l--~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 150 FDFAFVDA--DKDNYSNYYERLL--RLLRVGGVIVVDN 183 (237)
T ss_pred eeEEEEcc--chHHHHHHHHHHH--hhcccccEEEEec
Confidence 99999995 4455655555554 4899999999876
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.6e-08 Score=92.33 Aligned_cols=99 Identities=16% Similarity=0.041 Sum_probs=68.6
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCC--------------CCceEEEEecHHHHHH
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGF--------------LDVSSIHTVRVETFLE 220 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl--------------~~~v~ii~gD~~~~l~ 220 (317)
++.+|||+|||.|.-++.++.+|. +|+|||+++.++ +.+.. .+++ ..+++++++|+.++..
T Consensus 37 ~~~rvL~~gCG~G~da~~LA~~G~-~V~avD~s~~Ai-~~~~~---~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~ 111 (218)
T PRK13255 37 AGSRVLVPLCGKSLDMLWLAEQGH-EVLGVELSELAV-EQFFA---ENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTA 111 (218)
T ss_pred CCCeEEEeCCCChHhHHHHHhCCC-eEEEEccCHHHH-HHHHH---HcCCCccccccccccccccCceEEEECcccCCCc
Confidence 467999999999999999999998 599999999999 76532 2222 2468899999987632
Q ss_pred HHhhhcCCCCCccEEEECCCCC---CccHHHHHHHHHHcCCcCCCeEEE
Q 021116 221 RAEQFVGKDGPFDYMSVTPPYT---AVDYEVLMAQISKSALVGKDSFIV 266 (317)
Q Consensus 221 ~~~~~~~~~~~fDlV~~dPPy~---~~~~~~~l~~L~~~~lLkpgG~iv 266 (317)
. ..+.||.|+--.-+. .......++.+. ++|+|||+++
T Consensus 112 ~------~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~--~lL~pgG~~~ 152 (218)
T PRK13255 112 A------DLADVDAVYDRAALIALPEEMRERYVQQLA--ALLPAGCRGL 152 (218)
T ss_pred c------cCCCeeEEEehHhHhhCCHHHHHHHHHHHH--HHcCCCCeEE
Confidence 1 125788888322111 112345566665 4899998633
|
|
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=98.81 E-value=4.7e-08 Score=90.69 Aligned_cols=98 Identities=17% Similarity=0.185 Sum_probs=73.2
Q ss_pred hHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEE
Q 021116 133 MEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHT 212 (317)
Q Consensus 133 ~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~ 212 (317)
...+.+.+.+.+.. .++.+|||+|||+|.++..++.++. +|+++|+|+.++ +.+++++.. .+++++++
T Consensus 14 d~~i~~~i~~~~~~-------~~~~~VLEiG~G~G~lt~~L~~~~~-~v~~iE~d~~~~-~~l~~~~~~---~~~v~v~~ 81 (253)
T TIGR00755 14 DESVIQKIVEAANV-------LEGDVVLEIGPGLGALTEPLLKRAK-KVTAIEIDPRLA-EILRKLLSL---YERLEVIE 81 (253)
T ss_pred CHHHHHHHHHhcCC-------CCcCEEEEeCCCCCHHHHHHHHhCC-cEEEEECCHHHH-HHHHHHhCc---CCcEEEEE
Confidence 34456666666543 3578999999999999999888875 699999999998 999888743 34689999
Q ss_pred ecHHHHHHHHhhhcCCCCCcc---EEEECCCCCCccHHHHHHHH
Q 021116 213 VRVETFLERAEQFVGKDGPFD---YMSVTPPYTAVDYEVLMAQI 253 (317)
Q Consensus 213 gD~~~~l~~~~~~~~~~~~fD---lV~~dPPy~~~~~~~~l~~L 253 (317)
+|+.++.. ..|| +|+.|+||+. ..+++..+
T Consensus 82 ~D~~~~~~---------~~~d~~~~vvsNlPy~i--~~~il~~l 114 (253)
T TIGR00755 82 GDALKVDL---------PDFPKQLKVVSNLPYNI--SSPLIFKL 114 (253)
T ss_pred CchhcCCh---------hHcCCcceEEEcCChhh--HHHHHHHH
Confidence 99876531 2355 9999999974 23444444
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=6.8e-08 Score=91.84 Aligned_cols=127 Identities=9% Similarity=-0.067 Sum_probs=81.7
Q ss_pred CCCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHhHHHhCCCC
Q 021116 129 VRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLD 206 (317)
Q Consensus 129 ~rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~-G-a~~V~aVDin~~al~~~ar~N~~~~gl~~ 206 (317)
..|-.+.++.++++-+.... ..++.+|||+|||+|.++..++.. | ..+|++||+++++. +.+.+-++.. .
T Consensus 110 w~p~rSKlaa~i~~g~~~l~----IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~-~dLl~~ak~r---~ 181 (293)
T PTZ00146 110 WNPFRSKLAAAIIGGVANIP----IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSG-RDLTNMAKKR---P 181 (293)
T ss_pred eCCcccHHHHHHHCCcceec----cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHH-HHHHHHhhhc---C
Confidence 45777778877766554321 136789999999999999988765 2 34799999999875 4443332221 3
Q ss_pred ceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 207 VSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 207 ~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
++.++.+|+....... ...+.||+||+|-.. ..+...++..+ .++|+|+|.+++...
T Consensus 182 NI~~I~~Da~~p~~y~----~~~~~vDvV~~Dva~-pdq~~il~~na--~r~LKpGG~~vI~ik 238 (293)
T PTZ00146 182 NIVPIIEDARYPQKYR----MLVPMVDVIFADVAQ-PDQARIVALNA--QYFLKNGGHFIISIK 238 (293)
T ss_pred CCEEEECCccChhhhh----cccCCCCEEEEeCCC-cchHHHHHHHH--HHhccCCCEEEEEEe
Confidence 4778889976421110 012579999999742 11222222222 358999999998543
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.81 E-value=7.7e-10 Score=87.35 Aligned_cols=97 Identities=16% Similarity=0.169 Sum_probs=57.8
Q ss_pred EEECCCcchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEEC
Q 021116 160 LDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVT 238 (317)
Q Consensus 160 LDlgcGtG~l~Ieaas~-Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~d 238 (317)
||+|||+|.++..++.. ...+++++|+|+.++ +.+++++...+..+ ...++.+..+..... ..++||+|++.
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l-~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~-----~~~~fD~V~~~ 73 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSML-ERARERLAELGNDN-FERLRFDVLDLFDYD-----PPESFDLVVAS 73 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTT-STTCCCHHHCT----EEEEE--SSS---CC-----C----SEEEEE
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHhhhcCCcc-eeEEEeecCChhhcc-----cccccceehhh
Confidence 79999999999887765 345799999999999 99999988877543 444554444333211 12489999986
Q ss_pred CCCC-CccHHHHHHHHHHcCCcCCCeEE
Q 021116 239 PPYT-AVDYEVLMAQISKSALVGKDSFI 265 (317)
Q Consensus 239 PPy~-~~~~~~~l~~L~~~~lLkpgG~i 265 (317)
--.+ ..+....++.+. ++|+|||++
T Consensus 74 ~vl~~l~~~~~~l~~~~--~~L~pgG~l 99 (99)
T PF08242_consen 74 NVLHHLEDIEAVLRNIY--RLLKPGGIL 99 (99)
T ss_dssp -TTS--S-HHHHHHHHT--TT-TSS-EE
T ss_pred hhHhhhhhHHHHHHHHH--HHcCCCCCC
Confidence 4332 235566666654 699999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=98.80 E-value=8.1e-08 Score=86.78 Aligned_cols=71 Identities=17% Similarity=0.063 Sum_probs=56.2
Q ss_pred CCCeEEEECCCcchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~-Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
++.+|||+|||+|..+..++.. +..++++||+|+.++ +.|++|.. +++++++|+.+.. .+++||
T Consensus 43 ~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l-~~A~~~~~------~~~~~~~d~~~~~--------~~~sfD 107 (204)
T TIGR03587 43 KIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAV-EKAKAYLP------NINIIQGSLFDPF--------KDNFFD 107 (204)
T ss_pred CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHH-HHHHhhCC------CCcEEEeeccCCC--------CCCCEE
Confidence 5678999999999999887765 445799999999999 99988742 2567888876521 257899
Q ss_pred EEEECCC
Q 021116 234 YMSVTPP 240 (317)
Q Consensus 234 lV~~dPP 240 (317)
+|+++--
T Consensus 108 ~V~~~~v 114 (204)
T TIGR03587 108 LVLTKGV 114 (204)
T ss_pred EEEECCh
Confidence 9998754
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=4.5e-08 Score=91.72 Aligned_cols=97 Identities=9% Similarity=0.109 Sum_probs=68.9
Q ss_pred CCCeEEEECCCcchHHHHHHHcC----CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCC
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRG----CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDG 230 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~G----a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~ 230 (317)
...+|||+|||+|.++..++... ...|+++|+++.++ +.|+++. .+++++.+|+.+. +..++
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l-~~A~~~~------~~~~~~~~d~~~l-------p~~~~ 150 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAI-KYAAKRY------PQVTFCVASSHRL-------PFADQ 150 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHH-HHHHHhC------CCCeEEEeecccC-------CCcCC
Confidence 45789999999999988766432 23699999999999 8887653 2367888887653 22357
Q ss_pred CccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCCCC
Q 021116 231 PFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRT 273 (317)
Q Consensus 231 ~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~~ 273 (317)
+||+|+.. +.... ++.+. ++|+|||++++..+...
T Consensus 151 sfD~I~~~--~~~~~----~~e~~--rvLkpgG~li~~~p~~~ 185 (272)
T PRK11088 151 SLDAIIRI--YAPCK----AEELA--RVVKPGGIVITVTPGPR 185 (272)
T ss_pred ceeEEEEe--cCCCC----HHHHH--hhccCCCEEEEEeCCCc
Confidence 89999963 22112 23333 57999999998866443
|
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.6e-08 Score=93.40 Aligned_cols=107 Identities=8% Similarity=0.017 Sum_probs=72.1
Q ss_pred CCCeEEEECCCcch----HHHHHHHcC------CCEEEEEeCCHHHHHHHHHHhHHH----hC-----------------
Q 021116 155 RPGRWLDLYSGTGS----VGIEAISRG------CSEVHFVEMDPWVVSNVLIPNLEW----TG----------------- 203 (317)
Q Consensus 155 ~~~rVLDlgcGtG~----l~Ieaas~G------a~~V~aVDin~~al~~~ar~N~~~----~g----------------- 203 (317)
.+.+|||+|||||- +++.++..+ ..+|+|+|+|+.++ +.|++++-. .+
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L-~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~ 177 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKAL-EKARAGIYPERELEDLPKALLARYFSRVEDKY 177 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHH-HHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence 35799999999994 566554432 23799999999999 999986410 01
Q ss_pred -----CCCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCc---cHHHHHHHHHHcCCcCCCeEEEEEeCC
Q 021116 204 -----FLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAV---DYEVLMAQISKSALVGKDSFIVVEYPL 271 (317)
Q Consensus 204 -----l~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~---~~~~~l~~L~~~~lLkpgG~ivv~~~~ 271 (317)
+.+++++.++|+.+.. ...++||+|++.--.... ....+++.+. +.|+|||++++.+..
T Consensus 178 ~v~~~ir~~V~F~~~dl~~~~-------~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~--~~L~pGG~L~lg~~E 244 (264)
T smart00138 178 RVKPELKERVRFAKHNLLAES-------PPLGDFDLIFCRNVLIYFDEPTQRKLLNRFA--EALKPGGYLFLGHSE 244 (264)
T ss_pred EEChHHhCcCEEeeccCCCCC-------CccCCCCEEEechhHHhCCHHHHHHHHHHHH--HHhCCCeEEEEECcc
Confidence 2235788888876532 124689999984221111 2334566654 589999999997753
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=98.78 E-value=6.5e-08 Score=85.58 Aligned_cols=106 Identities=14% Similarity=0.107 Sum_probs=67.4
Q ss_pred CCCCeEEEECCCcchHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHH--HHHhhhcCCC
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL--ERAEQFVGKD 229 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~--Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l--~~~~~~~~~~ 229 (317)
.++.+|||+|||+|.++..++.+ +..+|+++|+++.+ .. .+++++++|+.+.. ..... ....
T Consensus 31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~------------~~-~~i~~~~~d~~~~~~~~~l~~-~~~~ 96 (188)
T TIGR00438 31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK------------PI-ENVDFIRGDFTDEEVLNKIRE-RVGD 96 (188)
T ss_pred CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc------------cC-CCceEEEeeCCChhHHHHHHH-HhCC
Confidence 46889999999999999877654 34579999999843 11 23677888875421 11000 0124
Q ss_pred CCccEEEECCC--CC-Cc--c-------HHHHHHHHHHcCCcCCCeEEEEEeCCCCCc
Q 021116 230 GPFDYMSVTPP--YT-AV--D-------YEVLMAQISKSALVGKDSFIVVEYPLRTDM 275 (317)
Q Consensus 230 ~~fDlV~~dPP--y~-~~--~-------~~~~l~~L~~~~lLkpgG~ivv~~~~~~~l 275 (317)
+.||+|++|++ +. .. . .+..++.+. +.|+|||+++++......+
T Consensus 97 ~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~--~~LkpgG~lvi~~~~~~~~ 152 (188)
T TIGR00438 97 DKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAK--EVLKPKGNFVVKVFQGEEI 152 (188)
T ss_pred CCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHH--HHccCCCEEEEEEccCccH
Confidence 57999999852 21 11 1 133444433 5899999999976544443
|
|
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.5e-08 Score=90.61 Aligned_cols=109 Identities=24% Similarity=0.336 Sum_probs=83.3
Q ss_pred CCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCc
Q 021116 153 SLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF 232 (317)
Q Consensus 153 ~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~f 232 (317)
..++++|||+|+|+|..+|.++..|++.|++.|++|... +.++.|++.||+. +.+...|... .+..|
T Consensus 77 tVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~-~ai~lNa~angv~--i~~~~~d~~g----------~~~~~ 143 (218)
T COG3897 77 TVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLE-QAIRLNAAANGVS--ILFTHADLIG----------SPPAF 143 (218)
T ss_pred ccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHH-HHhhcchhhccce--eEEeeccccC----------CCcce
Confidence 367999999999999999999999999999999999998 9999999999985 7888887543 25789
Q ss_pred cEEEE-CCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCCCCCcc
Q 021116 233 DYMSV-TPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDML 276 (317)
Q Consensus 233 DlV~~-dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~~~l~ 276 (317)
|++++ |--|.......++..+.. +...|-.+++-.+.+..++
T Consensus 144 Dl~LagDlfy~~~~a~~l~~~~~~--l~~~g~~vlvgdp~R~~lp 186 (218)
T COG3897 144 DLLLAGDLFYNHTEADRLIPWKDR--LAEAGAAVLVGDPGRAYLP 186 (218)
T ss_pred eEEEeeceecCchHHHHHHHHHHH--HHhCCCEEEEeCCCCCCCc
Confidence 99997 665665555666664431 2344444555555555554
|
|
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=98.73 E-value=3.5e-08 Score=88.65 Aligned_cols=103 Identities=17% Similarity=0.237 Sum_probs=72.0
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccE
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDl 234 (317)
.-.++||+|||.|.++..++.+ +.+++++|+++.++ +.|++.++. . .+|++++.|+.++.. .++||+
T Consensus 43 ry~~alEvGCs~G~lT~~LA~r-Cd~LlavDis~~Al-~~Ar~Rl~~--~-~~V~~~~~dvp~~~P--------~~~FDL 109 (201)
T PF05401_consen 43 RYRRALEVGCSIGVLTERLAPR-CDRLLAVDISPRAL-ARARERLAG--L-PHVEWIQADVPEFWP--------EGRFDL 109 (201)
T ss_dssp SEEEEEEE--TTSHHHHHHGGG-EEEEEEEES-HHHH-HHHHHHTTT----SSEEEEES-TTT-----------SS-EEE
T ss_pred ccceeEecCCCccHHHHHHHHh-hCceEEEeCCHHHH-HHHHHhcCC--C-CCeEEEECcCCCCCC--------CCCeeE
Confidence 4578999999999999988777 57899999999999 999988764 3 359999999988752 478999
Q ss_pred EEECCC-CCCcc---HHHHHHHHHHcCCcCCCeEEEEEeCCC
Q 021116 235 MSVTPP-YTAVD---YEVLMAQISKSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 235 V~~dPP-y~~~~---~~~~l~~L~~~~lLkpgG~ivv~~~~~ 272 (317)
|++.-- |.... +...++.+.+ .|+|||.+++.+...
T Consensus 110 IV~SEVlYYL~~~~~L~~~l~~l~~--~L~pgG~LV~g~~rd 149 (201)
T PF05401_consen 110 IVLSEVLYYLDDAEDLRAALDRLVA--ALAPGGHLVFGHARD 149 (201)
T ss_dssp EEEES-GGGSSSHHHHHHHHHHHHH--TEEEEEEEEEEEE-H
T ss_pred EEEehHhHcCCCHHHHHHHHHHHHH--HhCCCCEEEEEEecC
Confidence 998532 33222 3344555543 799999999987643
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.6e-07 Score=91.75 Aligned_cols=110 Identities=16% Similarity=0.137 Sum_probs=79.3
Q ss_pred CCCCeEEEECCCcchHHHHHHHcC---CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCC
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRG---CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDG 230 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~G---a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~ 230 (317)
.++.+|||+|++.|+=+..++... ...|+++|+++..+ +.+++|++++|+.+ +.+++.|...+..... ...
T Consensus 155 ~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl-~~l~~nl~RlG~~n-v~~~~~d~~~~~~~~~----~~~ 228 (355)
T COG0144 155 KPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRL-KRLRENLKRLGVRN-VIVVNKDARRLAELLP----GGE 228 (355)
T ss_pred CCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHH-HHHHHHHHHcCCCc-eEEEeccccccccccc----ccC
Confidence 478999999999999887765532 23479999999999 99999999999987 7788888765433221 123
Q ss_pred CccEEEECCCCCC-cc---------------H----HHHHHHHH-HcCCcCCCeEEEEEe
Q 021116 231 PFDYMSVTPPYTA-VD---------------Y----EVLMAQIS-KSALVGKDSFIVVEY 269 (317)
Q Consensus 231 ~fDlV~~dPPy~~-~~---------------~----~~~l~~L~-~~~lLkpgG~ivv~~ 269 (317)
+||.|++|+|... +. . .-+.+.|. +.++|+|||.++.++
T Consensus 229 ~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYST 288 (355)
T COG0144 229 KFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYST 288 (355)
T ss_pred cCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEc
Confidence 5999999999863 21 0 11122222 246899999986543
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.3e-07 Score=84.72 Aligned_cols=97 Identities=21% Similarity=0.256 Sum_probs=66.3
Q ss_pred CCCCeEEEECCCcchHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF 232 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas-~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~f 232 (317)
.++.+|||||||.|.+--.+.. +++ +.++||+|++.+ ..+.+ .| +.++++|+.+.+..+ .+++|
T Consensus 12 ~pgsrVLDLGCGdG~LL~~L~~~k~v-~g~GvEid~~~v-~~cv~----rG----v~Viq~Dld~gL~~f-----~d~sF 76 (193)
T PF07021_consen 12 EPGSRVLDLGCGDGELLAYLKDEKQV-DGYGVEIDPDNV-AACVA----RG----VSVIQGDLDEGLADF-----PDQSF 76 (193)
T ss_pred CCCCEEEecCCCchHHHHHHHHhcCC-eEEEEecCHHHH-HHHHH----cC----CCEEECCHHHhHhhC-----CCCCc
Confidence 3589999999999999866555 444 699999999987 44432 34 458999999988765 47899
Q ss_pred cEEEECCCCC-CccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 233 DYMSVTPPYT-AVDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 233 DlV~~dPPy~-~~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
|.||+.=--. ....+.+++.+ |+=|...+++.+
T Consensus 77 D~VIlsqtLQ~~~~P~~vL~Em-----lRVgr~~IVsFP 110 (193)
T PF07021_consen 77 DYVILSQTLQAVRRPDEVLEEM-----LRVGRRAIVSFP 110 (193)
T ss_pred cEEehHhHHHhHhHHHHHHHHH-----HHhcCeEEEEec
Confidence 9999962100 01123444443 344556666655
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.68 E-value=5.3e-08 Score=88.52 Aligned_cols=101 Identities=17% Similarity=0.225 Sum_probs=78.9
Q ss_pred CCCeEEEECCCcchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~-Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
...+|.|||||+|..+-.++.| ....++++|.|++|+ +.|++.+ .+++|.++|+.+|- ....+|
T Consensus 30 ~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Ml-a~Aa~rl------p~~~f~~aDl~~w~--------p~~~~d 94 (257)
T COG4106 30 RPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAML-AKAAQRL------PDATFEEADLRTWK--------PEQPTD 94 (257)
T ss_pred ccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHH-HHHHHhC------CCCceecccHhhcC--------CCCccc
Confidence 4679999999999998666655 556899999999999 7775432 23789999999984 246799
Q ss_pred EEEECCCCCC-ccHHHHHHHHHHcCCcCCCeEEEEEeCCC
Q 021116 234 YMSVTPPYTA-VDYEVLMAQISKSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 234 lV~~dPPy~~-~~~~~~l~~L~~~~lLkpgG~ivv~~~~~ 272 (317)
++|.|.-+.+ .++.+++..+.. .|.|||++-+..+..
T Consensus 95 llfaNAvlqWlpdH~~ll~rL~~--~L~Pgg~LAVQmPdN 132 (257)
T COG4106 95 LLFANAVLQWLPDHPELLPRLVS--QLAPGGVLAVQMPDN 132 (257)
T ss_pred hhhhhhhhhhccccHHHHHHHHH--hhCCCceEEEECCCc
Confidence 9999987654 466777777764 799999999987644
|
|
| >KOG2671 consensus Putative RNA methylase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.8e-08 Score=94.49 Aligned_cols=111 Identities=21% Similarity=0.187 Sum_probs=81.1
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHH-------HHHHhHHHhCCCCc-eEEEEecHHHHHHHHhhh
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSN-------VLIPNLEWTGFLDV-SSIHTVRVETFLERAEQF 225 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~-------~ar~N~~~~gl~~~-v~ii~gD~~~~l~~~~~~ 225 (317)
.+|+.|+|+|.|||++-+.++..|+ .|+|-|||-.++ . -.+.|++..|..++ +.++.+|..+..-.
T Consensus 207 ~pGdivyDPFVGTGslLvsaa~FGa-~viGtDIDyr~v-ragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~r---- 280 (421)
T KOG2671|consen 207 KPGDIVYDPFVGTGSLLVSAAHFGA-YVIGTDIDYRTV-RAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLR---- 280 (421)
T ss_pred CCCCEEecCccccCceeeehhhhcc-eeeccccchhee-ecccCCCcchhHhHHHhCCcchhhheeeecccCcchh----
Confidence 5799999999999999999998887 799999999887 5 35778888886543 45677776543211
Q ss_pred cCCCCCccEEEECCCCCCcc------------------------------HHHHHHHHH--HcCCcCCCeEEEEEeCCC
Q 021116 226 VGKDGPFDYMSVTPPYTAVD------------------------------YEVLMAQIS--KSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 226 ~~~~~~fDlV~~dPPy~~~~------------------------------~~~~l~~L~--~~~lLkpgG~ivv~~~~~ 272 (317)
....||.|++||||+-.. +..++..+. .++.|..||++++-.+..
T Consensus 281 --sn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~p~~ 357 (421)
T KOG2671|consen 281 --SNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWLPTI 357 (421)
T ss_pred --hcceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEecCch
Confidence 135799999999997320 112222222 457899999999877644
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.9e-07 Score=83.01 Aligned_cols=86 Identities=20% Similarity=0.152 Sum_probs=60.7
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccE
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDl 234 (317)
++.+|||+|||+|.++..++......++++|+++.++ +.++++ +++++++|+.+.+... .+++||+
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i-~~a~~~--------~~~~~~~d~~~~l~~~-----~~~sfD~ 78 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGV-LACVAR--------GVNVIQGDLDEGLEAF-----PDKSFDY 78 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHH-HHHHHc--------CCeEEEEEhhhccccc-----CCCCcCE
Confidence 4679999999999999877655444689999999998 777542 2568889987633211 2468999
Q ss_pred EEECCCCCC-ccHHHHHHHHH
Q 021116 235 MSVTPPYTA-VDYEVLMAQIS 254 (317)
Q Consensus 235 V~~dPPy~~-~~~~~~l~~L~ 254 (317)
|+++.+++. .+....++.+.
T Consensus 79 Vi~~~~l~~~~d~~~~l~e~~ 99 (194)
T TIGR02081 79 VILSQTLQATRNPEEILDEML 99 (194)
T ss_pred EEEhhHhHcCcCHHHHHHHHH
Confidence 999876532 34455555543
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=9.7e-07 Score=74.96 Aligned_cols=117 Identities=11% Similarity=0.110 Sum_probs=77.3
Q ss_pred CCCeEEEECCCcch-HHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 155 RPGRWLDLYSGTGS-VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 155 ~~~rVLDlgcGtG~-l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
++.++||+|||+|. ++..+.+.|. +|+++|+|+.++ +.++++ + ++++.+|+++.-... -..+|
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~G~-~ViaIDi~~~aV-~~a~~~----~----~~~v~dDlf~p~~~~------y~~a~ 79 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKESGF-DVIVIDINEKAV-EKAKKL----G----LNAFVDDLFNPNLEI------YKNAK 79 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHCCC-EEEEEECCHHHH-HHHHHh----C----CeEEECcCCCCCHHH------HhcCC
Confidence 46789999999995 8887777786 699999999998 888765 2 467888987653322 25799
Q ss_pred EEE-ECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCCCCCccccCCCeEEEEEeecCceEEEEEee
Q 021116 234 YMS-VTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDRRFGRTHLAIYGP 300 (317)
Q Consensus 234 lV~-~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~~~l~~~~~~~~~~~~r~yG~~~l~~~~p 300 (317)
+|. +.||.. +...+..++. +-|.-+++..-..+... ..+ +-..|....+.+|+|
T Consensus 80 liysirpp~e---l~~~~~~la~----~~~~~~~i~~l~~e~~~---~~~---kl~ny~~~~~y~~~~ 134 (134)
T PRK04148 80 LIYSIRPPRD---LQPFILELAK----KINVPLIIKPLSGEEPI---KEL---KLINYKGKPIYVWKP 134 (134)
T ss_pred EEEEeCCCHH---HHHHHHHHHH----HcCCCEEEEcCCCCCCC---cce---EEEecCCeEEEEeCC
Confidence 999 577742 3333333332 33455555544444322 333 445677777777763
|
|
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.8e-08 Score=87.73 Aligned_cols=72 Identities=18% Similarity=0.154 Sum_probs=61.1
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccE
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDl 234 (317)
..+.+.|||+|||.+++.|+.. +.+|++||.||... ++|.+|+..+|.. +++++.+|+.+.-. ...|+
T Consensus 32 a~d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a-~~a~eN~~v~g~~-n~evv~gDA~~y~f---------e~ADv 99 (252)
T COG4076 32 AEDTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRA-RLAEENLHVPGDV-NWEVVVGDARDYDF---------ENADV 99 (252)
T ss_pred hhhceeeccCCcchHHHHHHhh-hceEEEEecCcHHH-HHhhhcCCCCCCc-ceEEEecccccccc---------cccce
Confidence 4578999999999999987766 78999999999998 9999999888874 59999999987631 35688
Q ss_pred EEEC
Q 021116 235 MSVT 238 (317)
Q Consensus 235 V~~d 238 (317)
|++.
T Consensus 100 vicE 103 (252)
T COG4076 100 VICE 103 (252)
T ss_pred eHHH
Confidence 8864
|
|
| >PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2 | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.9e-07 Score=92.00 Aligned_cols=149 Identities=21% Similarity=0.352 Sum_probs=92.6
Q ss_pred CCCCCCCChHHHHHHH------HHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHc--CCCEEEEEeCCHHHHHHHHH
Q 021116 125 KGMDVRPMMEVVKGAA------FDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLI 196 (317)
Q Consensus 125 ~~~~~rpt~~~v~~al------f~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~--Ga~~V~aVDin~~al~~~ar 196 (317)
...+++|.+..-+... ++.+.... ...-++||..||||.=|+..+.. |..+|++.|+|++++ +.++
T Consensus 18 ~~vFYNP~~~~nRDlsvl~~~~~~~~~~~~-----~~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~-~~i~ 91 (377)
T PF02005_consen 18 APVFYNPVMEFNRDLSVLAIRYLAVLKEKR-----KGPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAV-ELIK 91 (377)
T ss_dssp SSSS--GGGHHHHHHHHHH---HHHHHHCH------S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHH-HHHH
T ss_pred CCcccCcchhcccceeehhHHHHHHhhhhh-----cCCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHH-HHHH
Confidence 4457888775433322 23332210 12458999999999999986654 678999999999998 9999
Q ss_pred HhHHHhCCCC-ceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCCCCCc
Q 021116 197 PNLEWTGFLD-VSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDM 275 (317)
Q Consensus 197 ~N~~~~gl~~-~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~~~l 275 (317)
+|++.|++++ ++++.+.|+...+.. ....||+|=+|| |+. -...++.... .++.||++.+.+. +.
T Consensus 92 ~N~~~N~~~~~~~~v~~~DAn~ll~~------~~~~fD~IDlDP-fGS--p~pfldsA~~--~v~~gGll~vTaT---D~ 157 (377)
T PF02005_consen 92 RNLELNGLEDERIEVSNMDANVLLYS------RQERFDVIDLDP-FGS--PAPFLDSALQ--AVKDGGLLCVTAT---DT 157 (377)
T ss_dssp HHHHHCT-SGCCEEEEES-HHHHHCH------STT-EEEEEE---SS----HHHHHHHHH--HEEEEEEEEEEE-----H
T ss_pred HhHhhccccCceEEEehhhHHHHhhh------ccccCCEEEeCC-CCC--ccHhHHHHHH--HhhcCCEEEEecc---cc
Confidence 9999999987 789999999987742 247899999996 654 3344544332 4789999998774 33
Q ss_pred cccCCCeEEEEEeecCce
Q 021116 276 LDTCGCLVKIKDRRFGRT 293 (317)
Q Consensus 276 ~~~~~~~~~~~~r~yG~~ 293 (317)
..+++......-++||..
T Consensus 158 a~L~G~~~~~~~r~Yg~~ 175 (377)
T PF02005_consen 158 AVLCGSYPEKCFRKYGAV 175 (377)
T ss_dssp HHHTTSSHHHHHHHHSSB
T ss_pred ccccCCChhHHHHhcCCc
Confidence 323333222223667753
|
1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: |
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.4e-06 Score=82.65 Aligned_cols=83 Identities=18% Similarity=0.259 Sum_probs=67.9
Q ss_pred CCCCeEEEECCCcchHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCC
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGP 231 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~-G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~ 231 (317)
.++.+|||+||+.|+-+..++.. + ..+|+++|+++..+ +.+++|+++.|+.+ +.++..|......... ...
T Consensus 84 ~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl-~~l~~~~~r~g~~~-v~~~~~D~~~~~~~~~-----~~~ 156 (283)
T PF01189_consen 84 QPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRL-KRLKENLKRLGVFN-VIVINADARKLDPKKP-----ESK 156 (283)
T ss_dssp TTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHH-HHHHHHHHHTT-SS-EEEEESHHHHHHHHHH-----TTT
T ss_pred cccccccccccCCCCceeeeeecccchhHHHHhccCHHHH-HHHHHHHHhcCCce-EEEEeecccccccccc-----ccc
Confidence 46889999999999999876653 2 46899999999999 99999999999965 7788899888755442 245
Q ss_pred ccEEEECCCCCC
Q 021116 232 FDYMSVTPPYTA 243 (317)
Q Consensus 232 fDlV~~dPPy~~ 243 (317)
||.|++|+|...
T Consensus 157 fd~VlvDaPCSg 168 (283)
T PF01189_consen 157 FDRVLVDAPCSG 168 (283)
T ss_dssp EEEEEEECSCCC
T ss_pred cchhhcCCCccc
Confidence 999999999863
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.5e-08 Score=91.33 Aligned_cols=118 Identities=22% Similarity=0.304 Sum_probs=84.2
Q ss_pred CCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEE
Q 021116 156 PGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYM 235 (317)
Q Consensus 156 ~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV 235 (317)
-.++||||||||..|..+-.+ +.++++||+|..|+ +.|.+. |+-+ ++.++|+..|+... .+++||+|
T Consensus 126 F~~~lDLGCGTGL~G~~lR~~-a~~ltGvDiS~nMl-~kA~eK----g~YD--~L~~Aea~~Fl~~~-----~~er~DLi 192 (287)
T COG4976 126 FRRMLDLGCGTGLTGEALRDM-ADRLTGVDISENML-AKAHEK----GLYD--TLYVAEAVLFLEDL-----TQERFDLI 192 (287)
T ss_pred cceeeecccCcCcccHhHHHH-HhhccCCchhHHHH-HHHHhc----cchH--HHHHHHHHHHhhhc-----cCCcccch
Confidence 579999999999999766555 56799999999999 777542 3323 35677888777543 35789999
Q ss_pred EE-CC-CCCCccHHHHHHHHHHcCCcCCCeEEEEEeCCCCCccccCCCeEEEEEeecCce
Q 021116 236 SV-TP-PYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDRRFGRT 293 (317)
Q Consensus 236 ~~-dP-Py~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~~~l~~~~~~~~~~~~r~yG~~ 293 (317)
.. |- ||. +.++.++-... .+|+|||.+.++.. ++.++ ++|.+-...+|-+.
T Consensus 193 ~AaDVl~Yl-G~Le~~~~~aa--~~L~~gGlfaFSvE---~l~~~-~~f~l~ps~RyAH~ 245 (287)
T COG4976 193 VAADVLPYL-GALEGLFAGAA--GLLAPGGLFAFSVE---TLPDD-GGFVLGPSQRYAHS 245 (287)
T ss_pred hhhhHHHhh-cchhhHHHHHH--HhcCCCceEEEEec---ccCCC-CCeecchhhhhccc
Confidence 96 42 453 46676666554 58999999998765 33333 55777666777543
|
|
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.60 E-value=5.4e-07 Score=80.95 Aligned_cols=108 Identities=14% Similarity=0.129 Sum_probs=80.2
Q ss_pred CCeEEEECCCcchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccE
Q 021116 156 PGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (317)
Q Consensus 156 ~~rVLDlgcGtG~l~Ieaas~-Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDl 234 (317)
...+||+|||.|.+.++.+.. .-..++|||+....+ ..+...+...++.| +.++++|+..++..+. .++++|-
T Consensus 18 ~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v-~~a~~~~~~~~l~N-v~~~~~da~~~l~~~~----~~~~v~~ 91 (195)
T PF02390_consen 18 NPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRV-AKALRKAEKRGLKN-VRFLRGDARELLRRLF----PPGSVDR 91 (195)
T ss_dssp CEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHH-HHHHHHHHHHTTSS-EEEEES-CTTHHHHHS----TTTSEEE
T ss_pred CCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHH-HHHHHHHHhhcccc-eEEEEccHHHHHhhcc----cCCchhe
Confidence 348999999999999987765 345799999999998 89999999999865 9999999998876652 3578999
Q ss_pred EEE---CCCCCCc-------cHHHHHHHHHHcCCcCCCeEEEEEeCCC
Q 021116 235 MSV---TPPYTAV-------DYEVLMAQISKSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 235 V~~---dPPy~~~-------~~~~~l~~L~~~~lLkpgG~ivv~~~~~ 272 (317)
|++ || +.+. ...+.++.+. ++|++||.|.+.++..
T Consensus 92 i~i~FPDP-WpK~rH~krRl~~~~fl~~~~--~~L~~gG~l~~~TD~~ 136 (195)
T PF02390_consen 92 IYINFPDP-WPKKRHHKRRLVNPEFLELLA--RVLKPGGELYFATDVE 136 (195)
T ss_dssp EEEES------SGGGGGGSTTSHHHHHHHH--HHEEEEEEEEEEES-H
T ss_pred EEEeCCCC-CcccchhhhhcCCchHHHHHH--HHcCCCCEEEEEeCCH
Confidence 987 54 3322 1356666665 4899999999988754
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.8e-07 Score=85.41 Aligned_cols=76 Identities=22% Similarity=0.334 Sum_probs=54.8
Q ss_pred CCCeEEEECCCcchHHHHHHH----cCC-CEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCC
Q 021116 155 RPGRWLDLYSGTGSVGIEAIS----RGC-SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKD 229 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas----~Ga-~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~ 229 (317)
++.+|||+|||+|.++..++. .|. .+|+++|+++.++ +.|+++....+ +++...|+.... ..+
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l-~~a~~~~~~~~----~~~~~~~~~~l~-------~~~ 127 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAV-AFARANPRRPG----VTFRQAVSDELV-------AEG 127 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHH-HHHHhccccCC----CeEEEEeccccc-------ccC
Confidence 567999999999999887653 242 3799999999999 99988865443 445555543321 124
Q ss_pred CCccEEEECCCCC
Q 021116 230 GPFDYMSVTPPYT 242 (317)
Q Consensus 230 ~~fDlV~~dPPy~ 242 (317)
++||+|+++--++
T Consensus 128 ~~fD~V~~~~~lh 140 (232)
T PRK06202 128 ERFDVVTSNHFLH 140 (232)
T ss_pred CCccEEEECCeee
Confidence 6899999986543
|
|
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.57 E-value=7.8e-07 Score=83.28 Aligned_cols=90 Identities=16% Similarity=0.127 Sum_probs=69.0
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecH
Q 021116 136 VKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRV 215 (317)
Q Consensus 136 v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~ 215 (317)
+...+.+.+.. .+++.||++|+|.|+++.++++++. +|++||+|+..+ +.+++... ..++++++++|+
T Consensus 18 v~~kIv~~a~~-------~~~d~VlEIGpG~GaLT~~Ll~~~~-~v~aiEiD~~l~-~~L~~~~~---~~~n~~vi~~Da 85 (259)
T COG0030 18 VIDKIVEAANI-------SPGDNVLEIGPGLGALTEPLLERAA-RVTAIEIDRRLA-EVLKERFA---PYDNLTVINGDA 85 (259)
T ss_pred HHHHHHHhcCC-------CCCCeEEEECCCCCHHHHHHHhhcC-eEEEEEeCHHHH-HHHHHhcc---cccceEEEeCch
Confidence 44555555543 3578999999999999999999876 599999999998 88877654 335699999999
Q ss_pred HHHHHHHhhhcCCCCCccEEEECCCCCC
Q 021116 216 ETFLERAEQFVGKDGPFDYMSVTPPYTA 243 (317)
Q Consensus 216 ~~~l~~~~~~~~~~~~fDlV~~dPPy~~ 243 (317)
..+.... -..++.|+.|.||+-
T Consensus 86 Lk~d~~~------l~~~~~vVaNlPY~I 107 (259)
T COG0030 86 LKFDFPS------LAQPYKVVANLPYNI 107 (259)
T ss_pred hcCcchh------hcCCCEEEEcCCCcc
Confidence 8763210 016899999999974
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.48 E-value=5.7e-07 Score=82.88 Aligned_cols=47 Identities=23% Similarity=0.187 Sum_probs=39.1
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHH
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLE 200 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~ 200 (317)
..+.+|||+|||||.++..++..|+.+|++||.++.++...+++|.+
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~~~ 120 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDER 120 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcCCC
Confidence 46889999999999999999999998999999999777233555533
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.47 E-value=8e-07 Score=86.36 Aligned_cols=147 Identities=21% Similarity=0.354 Sum_probs=97.7
Q ss_pred CCCCCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHhHHHhCCC
Q 021116 127 MDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFL 205 (317)
Q Consensus 127 ~~~rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~-Ga~~V~aVDin~~al~~~ar~N~~~~gl~ 205 (317)
.++.|.+..-+......++.... ....+|+|..||||.=||..+.. +..+|++-|+||.++ +++++|++.|..+
T Consensus 28 VFYNP~m~~NRDlsV~~l~~~~~----~~~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Av-elik~Nv~~N~~~ 102 (380)
T COG1867 28 VFYNPAMEFNRDLSVLVLKAFGK----LLPKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAV-ELIKENVRLNSGE 102 (380)
T ss_pred ceeCchhhhccchhHHHHHHhhc----cCCeEEeecccccchhHhhhhhhcCccEEEEccCCHHHH-HHHHHHHHhcCcc
Confidence 35677765544433333333210 12689999999999999987654 554899999999998 9999999999555
Q ss_pred CceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCCCCCccccCCCeEEE
Q 021116 206 DVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKI 285 (317)
Q Consensus 206 ~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~~~l~~~~~~~~~~ 285 (317)
+ ..+++.|+..++... ...||+|=+|| |+.. ...++... +-++.||++-+.+.-...+ ++....-
T Consensus 103 ~-~~v~n~DAN~lm~~~------~~~fd~IDiDP-FGSP--aPFlDaA~--~s~~~~G~l~vTATD~a~L---~G~~p~~ 167 (380)
T COG1867 103 D-AEVINKDANALLHEL------HRAFDVIDIDP-FGSP--APFLDAAL--RSVRRGGLLCVTATDTAPL---CGSYPRK 167 (380)
T ss_pred c-ceeecchHHHHHHhc------CCCccEEecCC-CCCC--chHHHHHH--HHhhcCCEEEEEecccccc---cCCChHH
Confidence 5 567779999888653 37899999996 6543 23333322 2367799998877533332 3442222
Q ss_pred EEeecCce
Q 021116 286 KDRRFGRT 293 (317)
Q Consensus 286 ~~r~yG~~ 293 (317)
.-|+|+..
T Consensus 168 c~rkY~a~ 175 (380)
T COG1867 168 CRRKYGAV 175 (380)
T ss_pred HHHHhccc
Confidence 23667654
|
|
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.1e-05 Score=70.85 Aligned_cols=125 Identities=16% Similarity=0.140 Sum_probs=89.5
Q ss_pred CCCCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCC--CEEEEEeCCHHHHHHHHHHhHHHhCCC
Q 021116 128 DVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGC--SEVHFVEMDPWVVSNVLIPNLEWTGFL 205 (317)
Q Consensus 128 ~~rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga--~~V~aVDin~~al~~~ar~N~~~~gl~ 205 (317)
..-||++..++.|.+.... ..+.-||++|.|||.++-..+++|. ..++++|.|++-+ ..+.+- .
T Consensus 28 aI~PsSs~lA~~M~s~I~p-------esglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~-~~L~~~---~--- 93 (194)
T COG3963 28 AILPSSSILARKMASVIDP-------ESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFV-CHLNQL---Y--- 93 (194)
T ss_pred eecCCcHHHHHHHHhccCc-------ccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHH-HHHHHh---C---
Confidence 3578999999999887765 3577899999999999999999885 4699999999987 554332 2
Q ss_pred CceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCccHH---HHHHHHHHcCCcCCCeEEE-EEeC
Q 021116 206 DVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYE---VLMAQISKSALVGKDSFIV-VEYP 270 (317)
Q Consensus 206 ~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~---~~l~~L~~~~lLkpgG~iv-v~~~ 270 (317)
+.+++++||+.+....+.. ..+..||.||+.-|...-... ++++.+. ..|..||-++ +.+.
T Consensus 94 p~~~ii~gda~~l~~~l~e--~~gq~~D~viS~lPll~~P~~~~iaile~~~--~rl~~gg~lvqftYg 158 (194)
T COG3963 94 PGVNIINGDAFDLRTTLGE--HKGQFFDSVISGLPLLNFPMHRRIAILESLL--YRLPAGGPLVQFTYG 158 (194)
T ss_pred CCccccccchhhHHHHHhh--cCCCeeeeEEeccccccCcHHHHHHHHHHHH--HhcCCCCeEEEEEec
Confidence 2256899999886533321 235679999999887543332 3444443 2577788776 4454
|
|
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.7e-06 Score=82.58 Aligned_cols=78 Identities=14% Similarity=0.085 Sum_probs=63.8
Q ss_pred CCCeEEEECCCcchHHHHHHHcC--CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCc
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRG--CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF 232 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~G--a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~f 232 (317)
++..++|.+||.|..+..+++.. ..+|+|+|.|++++ +.|++++.. .++++++++|..++...+. ..-.++
T Consensus 19 pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al-~~ak~~L~~---~~ri~~i~~~f~~l~~~l~---~~~~~v 91 (296)
T PRK00050 19 PDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAI-AAAKDRLKP---FGRFTLVHGNFSNLKEVLA---EGLGKV 91 (296)
T ss_pred CCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHH-HHHHHhhcc---CCcEEEEeCCHHHHHHHHH---cCCCcc
Confidence 57799999999999999988764 35899999999999 999988764 3679999999998865543 111279
Q ss_pred cEEEECC
Q 021116 233 DYMSVTP 239 (317)
Q Consensus 233 DlV~~dP 239 (317)
|.|++|.
T Consensus 92 DgIl~DL 98 (296)
T PRK00050 92 DGILLDL 98 (296)
T ss_pred CEEEECC
Confidence 9999986
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.6e-06 Score=80.67 Aligned_cols=107 Identities=18% Similarity=0.140 Sum_probs=80.3
Q ss_pred CCCeEEEECCCcchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHhHHHhCC---CCceEEEEecHHHHHHHHhhhcCCCC
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGF---LDVSSIHTVRVETFLERAEQFVGKDG 230 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~G-a~~V~aVDin~~al~~~ar~N~~~~gl---~~~v~ii~gD~~~~l~~~~~~~~~~~ 230 (317)
+.++||=+|-|.|...-++++.. ..+|+.||+|+..+ +.|++-+..... +++++++.+|+..++... ..
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv-~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~------~~ 148 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVV-ELARKYFPEFSEGLDDPRVRIIIGDGRKFLKET------QE 148 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHH-HHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTS------SS
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHH-HHHHHhchhhccccCCCceEEEEhhhHHHHHhc------cC
Confidence 57899999999999999887754 57899999999999 999987665432 367999999999999764 34
Q ss_pred -CccEEEECCCCCCc----c-HHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 231 -PFDYMSVTPPYTAV----D-YEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 231 -~fDlV~~dPPy~~~----~-~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
+||+|++|.+-..+ . -.+.++.+. +.|+++|++++...
T Consensus 149 ~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~--~~L~~~Gv~v~~~~ 192 (246)
T PF01564_consen 149 EKYDVIIVDLTDPDGPAPNLFTREFYQLCK--RRLKPDGVLVLQAG 192 (246)
T ss_dssp T-EEEEEEESSSTTSCGGGGSSHHHHHHHH--HHEEEEEEEEEEEE
T ss_pred CcccEEEEeCCCCCCCcccccCHHHHHHHH--hhcCCCcEEEEEcc
Confidence 89999998753211 1 245566655 37999999998763
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.42 E-value=9.1e-07 Score=82.91 Aligned_cols=79 Identities=22% Similarity=0.188 Sum_probs=66.0
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
.+.+.||++|-|||.++..++..|+ +|+|+|+|+.++ ....+-.+-...+++.+++.||+... ....||
T Consensus 57 k~tD~VLEvGPGTGnLT~~lLe~~k-kVvA~E~Dprmv-ael~krv~gtp~~~kLqV~~gD~lK~---------d~P~fd 125 (315)
T KOG0820|consen 57 KPTDVVLEVGPGTGNLTVKLLEAGK-KVVAVEIDPRMV-AELEKRVQGTPKSGKLQVLHGDFLKT---------DLPRFD 125 (315)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcC-eEEEEecCcHHH-HHHHHHhcCCCccceeeEEecccccC---------CCcccc
Confidence 4688999999999999999988876 699999999998 77776666555558899999997653 236899
Q ss_pred EEEECCCCCC
Q 021116 234 YMSVTPPYTA 243 (317)
Q Consensus 234 lV~~dPPy~~ 243 (317)
.++.|-||..
T Consensus 126 ~cVsNlPyqI 135 (315)
T KOG0820|consen 126 GCVSNLPYQI 135 (315)
T ss_pred eeeccCCccc
Confidence 9999999964
|
|
| >PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes | Back alignment and domain information |
|---|
Probab=98.42 E-value=3.6e-06 Score=76.58 Aligned_cols=137 Identities=14% Similarity=0.140 Sum_probs=80.9
Q ss_pred CCCeEEEECCCcchHHHH--HHHc-CCCEEEEEeCCHHHHHHHHHHhHHHhCC---------------------------
Q 021116 155 RPGRWLDLYSGTGSVGIE--AISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGF--------------------------- 204 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ie--aas~-Ga~~V~aVDin~~al~~~ar~N~~~~gl--------------------------- 204 (317)
..-+++|.|||+|.+--. ++.+ ....|++-|+|+.++ ++|++|+..+..
T Consensus 51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL-~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~ 129 (246)
T PF11599_consen 51 GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDAL-ELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALE 129 (246)
T ss_dssp S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHH-HHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHH-HHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence 457899999999987533 2332 245799999999999 999999875422
Q ss_pred --------------CCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCc----------cHHHHHHHHHHcCCcC
Q 021116 205 --------------LDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAV----------DYEVLMAQISKSALVG 260 (317)
Q Consensus 205 --------------~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~----------~~~~~l~~L~~~~lLk 260 (317)
.-...+.+.|++++..... . ......|+|+.|-||+.- .....++.|. +.|-
T Consensus 130 sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~-~-~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~--~vLp 205 (246)
T PF11599_consen 130 SADRLRERLAAEGGDEPHAIFRADVFDPSPLAV-L-DAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLA--PVLP 205 (246)
T ss_dssp HHHHHHHHHHHTTSS--EEEEE--TT-HHHHHH-H-HTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHH--CCS-
T ss_pred HHHHHHHHHHhcCCCCchhheeecccCCchhhh-h-ccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHH--hhCC
Confidence 1124577788877543211 1 113446999999999741 1344555554 5887
Q ss_pred CCeEEEEEeCCCCCccccCCCeEEEEEeecCceEEEEEe
Q 021116 261 KDSFIVVEYPLRTDMLDTCGCLVKIKDRRFGRTHLAIYG 299 (317)
Q Consensus 261 pgG~ivv~~~~~~~l~~~~~~~~~~~~r~yG~~~l~~~~ 299 (317)
.+++|.+ +...+.+. .+.|.-++.-+-|+-.+.||+
T Consensus 206 ~~sVV~v-~~k~~Ki~--~~~~r~~~rlKvGkR~~~l~r 241 (246)
T PF11599_consen 206 ERSVVAV-SDKGRKIP--HDRFRRLERLKVGKRQAALFR 241 (246)
T ss_dssp TT-EEEE-EESSSS-----TTS--SEEEEETTEEEEEEE
T ss_pred CCcEEEE-ecCCcccc--cchhHHHHHHhccceEEEEEe
Confidence 7777777 66566665 366777788888999999885
|
This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A. |
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.9e-06 Score=79.60 Aligned_cols=118 Identities=18% Similarity=0.077 Sum_probs=87.8
Q ss_pred eeeecceEEecCCCC---CCCCChHHHHHH---------------HHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHH
Q 021116 113 GGKARRKKLLSPKGM---DVRPMMEVVKGA---------------AFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAI 174 (317)
Q Consensus 113 ~G~~~G~~l~~p~~~---~~rpt~~~v~~a---------------lf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaa 174 (317)
-|+..|.++.+..|. ..+||.+....+ +..+|.. .+|.+|++-|+|+|+++..++
T Consensus 52 IGK~~G~~v~sskG~~vylL~PTpELWTl~LphRTQI~Yt~Dia~I~~~L~i-------~PGsvV~EsGTGSGSlShaia 124 (314)
T KOG2915|consen 52 IGKPYGSKVASSKGKFVYLLQPTPELWTLALPHRTQILYTPDIAMILSMLEI-------RPGSVVLESGTGSGSLSHAIA 124 (314)
T ss_pred ecCCccceeeecCCcEEEEecCChHHhhhhccCcceEEecccHHHHHHHhcC-------CCCCEEEecCCCcchHHHHHH
Confidence 367778888887773 358887653322 2333433 579999999999999998655
Q ss_pred Hc-C-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCC
Q 021116 175 SR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTA 243 (317)
Q Consensus 175 s~-G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~ 243 (317)
+. + -.|++..|.+.... +.|++-.+..|+.+++++...|+...-. ..+...+|.||+|.|--+
T Consensus 125 raV~ptGhl~tfefH~~Ra-~ka~eeFr~hgi~~~vt~~hrDVc~~GF-----~~ks~~aDaVFLDlPaPw 189 (314)
T KOG2915|consen 125 RAVAPTGHLYTFEFHETRA-EKALEEFREHGIGDNVTVTHRDVCGSGF-----LIKSLKADAVFLDLPAPW 189 (314)
T ss_pred HhhCcCcceEEEEecHHHH-HHHHHHHHHhCCCcceEEEEeecccCCc-----cccccccceEEEcCCChh
Confidence 43 2 35899999999997 9999999999999999999999865321 112467999999988543
|
|
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.6e-06 Score=77.17 Aligned_cols=121 Identities=15% Similarity=0.051 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHH-HHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceE-EE
Q 021116 134 EVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEA-ISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSS-IH 211 (317)
Q Consensus 134 ~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Iea-as~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~-ii 211 (317)
+.-++.+|+-+....+ ......||++|||||..--.. .+.+. +|+++|.|+.+- +.|.+.++.+.-. +++ ++
T Consensus 58 ~~ykrelFs~i~~~~g---k~~K~~vLEvgcGtG~Nfkfy~~~p~~-svt~lDpn~~me-e~~~ks~~E~k~~-~~~~fv 131 (252)
T KOG4300|consen 58 DSYKRELFSGIYYFLG---KSGKGDVLEVGCGTGANFKFYPWKPIN-SVTCLDPNEKME-EIADKSAAEKKPL-QVERFV 131 (252)
T ss_pred HHHHHHHHhhhHHHhc---ccCccceEEecccCCCCcccccCCCCc-eEEEeCCcHHHH-HHHHHHHhhccCc-ceEEEE
Confidence 3446667765432211 022345899999999764322 23555 699999999997 9999988877543 455 88
Q ss_pred EecHHHHHHHHhhhcCCCCCccEEEECCCCCCc---cHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 212 TVRVETFLERAEQFVGKDGPFDYMSVTPPYTAV---DYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 212 ~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~---~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
.+|.++... + .++++|.|+.-- ..+ +..++++.+. ++|+|||++++-..
T Consensus 132 va~ge~l~~-l-----~d~s~DtVV~Tl--vLCSve~~~k~L~e~~--rlLRpgG~iifiEH 183 (252)
T KOG4300|consen 132 VADGENLPQ-L-----ADGSYDTVVCTL--VLCSVEDPVKQLNEVR--RLLRPGGRIIFIEH 183 (252)
T ss_pred eechhcCcc-c-----ccCCeeeEEEEE--EEeccCCHHHHHHHHH--HhcCCCcEEEEEec
Confidence 899887642 2 368999999752 223 3445555554 69999999875443
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.31 E-value=1e-05 Score=74.58 Aligned_cols=108 Identities=11% Similarity=0.067 Sum_probs=85.3
Q ss_pred CeEEEECCCcchHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEE
Q 021116 157 GRWLDLYSGTGSVGIEAISRGC-SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYM 235 (317)
Q Consensus 157 ~rVLDlgcGtG~l~Ieaas~Ga-~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV 235 (317)
..+||+|||.|.+.++.|.... ...+|||+....+ ..|..-+...++. ++.++++|+..++..+. .+++.|-|
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v-~~~l~k~~~~~l~-Nlri~~~DA~~~l~~~~----~~~sl~~I 123 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGV-AKALKKIKELGLK-NLRLLCGDAVEVLDYLI----PDGSLDKI 123 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHH-HHHHHHHHHcCCC-cEEEEcCCHHHHHHhcC----CCCCeeEE
Confidence 5899999999999999877653 4699999999998 8888888888986 59999999999998763 34488888
Q ss_pred EECC--CCCCc-------cHHHHHHHHHHcCCcCCCeEEEEEeCCC
Q 021116 236 SVTP--PYTAV-------DYEVLMAQISKSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 236 ~~dP--Py~~~-------~~~~~l~~L~~~~lLkpgG~ivv~~~~~ 272 (317)
+++= |+.+. .....++.+. +.|++||.|.+.++..
T Consensus 124 ~i~FPDPWpKkRH~KRRl~~~~fl~~~a--~~Lk~gG~l~~aTD~~ 167 (227)
T COG0220 124 YINFPDPWPKKRHHKRRLTQPEFLKLYA--RKLKPGGVLHFATDNE 167 (227)
T ss_pred EEECCCCCCCccccccccCCHHHHHHHH--HHccCCCEEEEEecCH
Confidence 8742 24432 2456666665 4899999999988754
|
|
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.30 E-value=5.3e-06 Score=76.75 Aligned_cols=48 Identities=17% Similarity=0.309 Sum_probs=42.9
Q ss_pred CCCCeEEEECCCcchHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHhHHHh
Q 021116 154 LRPGRWLDLYSGTGSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWT 202 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas-~Ga~~V~aVDin~~al~~~ar~N~~~~ 202 (317)
..+.-+||+||-+|.+++..++ .|+..|.+||||+..+ +.|++|++..
T Consensus 57 f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI-~~Ark~~r~~ 105 (288)
T KOG2899|consen 57 FEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLI-QRARKEIRFP 105 (288)
T ss_pred cCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHH-HHHHHhcccc
Confidence 4578899999999999998776 5888999999999998 9999999864
|
|
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=98.28 E-value=5.2e-06 Score=77.61 Aligned_cols=104 Identities=15% Similarity=0.114 Sum_probs=76.1
Q ss_pred hHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEE
Q 021116 133 MEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHT 212 (317)
Q Consensus 133 ~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~ 212 (317)
...+.+.+.+.+.. .++..|||+|+|+|.++-+++..+ .+|++||+|+..+ +.+++... ..++++++.
T Consensus 15 ~~~~~~~Iv~~~~~-------~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~-~~L~~~~~---~~~~~~vi~ 82 (262)
T PF00398_consen 15 DPNIADKIVDALDL-------SEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLA-KHLKERFA---SNPNVEVIN 82 (262)
T ss_dssp HHHHHHHHHHHHTC-------GTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHH-HHHHHHCT---TCSSEEEEE
T ss_pred CHHHHHHHHHhcCC-------CCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHH-HHHHHHhh---hcccceeee
Confidence 35577777777754 368899999999999999998887 7899999999998 88887655 235699999
Q ss_pred ecHHHHHHHHhhhcCCCCCccEEEECCCCCCccHHHHHHHHH
Q 021116 213 VRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQIS 254 (317)
Q Consensus 213 gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~ 254 (317)
+|+.++..... .......|+.|.||.. ...++..+.
T Consensus 83 ~D~l~~~~~~~----~~~~~~~vv~NlPy~i--s~~il~~ll 118 (262)
T PF00398_consen 83 GDFLKWDLYDL----LKNQPLLVVGNLPYNI--SSPILRKLL 118 (262)
T ss_dssp S-TTTSCGGGH----CSSSEEEEEEEETGTG--HHHHHHHHH
T ss_pred cchhccccHHh----hcCCceEEEEEecccc--hHHHHHHHh
Confidence 99987632110 0134569999999953 344555544
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.1e-05 Score=73.25 Aligned_cols=105 Identities=17% Similarity=0.080 Sum_probs=60.3
Q ss_pred CCCCeEEEECCCcchHHHHHH-HcCCCEEEEEeCCHHHHHHHHHHhHHH-------hCCC-CceEEEEecHHHH--HHHH
Q 021116 154 LRPGRWLDLYSGTGSVGIEAI-SRGCSEVHFVEMDPWVVSNVLIPNLEW-------TGFL-DVSSIHTVRVETF--LERA 222 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaa-s~Ga~~V~aVDin~~al~~~ar~N~~~-------~gl~-~~v~ii~gD~~~~--l~~~ 222 (317)
.+++.++|||||.|.+-+.++ ..++.+++|||+.+... +.|+.+.+. +|.. .++++.++|+.+. ....
T Consensus 41 ~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~-~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~~ 119 (205)
T PF08123_consen 41 TPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELH-DLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKDI 119 (205)
T ss_dssp -TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHH-HHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHH-HHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhhh
Confidence 357899999999999988654 56888899999999987 888765543 3432 4578889997543 2211
Q ss_pred hhhcCCCCCccEEEECCCCCCccHHHHHHHHHH-cCCcCCCeEEEEE
Q 021116 223 EQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISK-SALVGKDSFIVVE 268 (317)
Q Consensus 223 ~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~-~~lLkpgG~ivv~ 268 (317)
- ..-|+||+|- ...-+++...|.+ ..-|++|.+|+..
T Consensus 120 ~------s~AdvVf~Nn---~~F~~~l~~~L~~~~~~lk~G~~IIs~ 157 (205)
T PF08123_consen 120 W------SDADVVFVNN---TCFDPDLNLALAELLLELKPGARIIST 157 (205)
T ss_dssp G------HC-SEEEE-----TTT-HHHHHHHHHHHTTS-TT-EEEES
T ss_pred h------cCCCEEEEec---cccCHHHHHHHHHHHhcCCCCCEEEEC
Confidence 0 3479999983 2222333333321 2468999888754
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=98.25 E-value=4e-06 Score=76.68 Aligned_cols=102 Identities=18% Similarity=0.037 Sum_probs=67.8
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHH-HHhHHHhCC----------CCceEEEEecHHHHHHHH
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVL-IPNLEWTGF----------LDVSSIHTVRVETFLERA 222 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~a-r~N~~~~gl----------~~~v~ii~gD~~~~l~~~ 222 (317)
..+.+||++|||.|.-.+.++.+|. +|+|+|+++.|+ +.+ ++|...... .++++++++|++++-..
T Consensus 36 ~~~~rvLvPgCG~g~D~~~La~~G~-~VvGvDls~~Ai-~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~- 112 (218)
T PF05724_consen 36 KPGGRVLVPGCGKGYDMLWLAEQGH-DVVGVDLSPTAI-EQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPE- 112 (218)
T ss_dssp STSEEEEETTTTTSCHHHHHHHTTE-EEEEEES-HHHH-HHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGS-
T ss_pred CCCCeEEEeCCCChHHHHHHHHCCC-eEEEEecCHHHH-HHHHHHhccCCCcccccceeeecCCceEEEEcccccCChh-
Confidence 3567999999999999999999987 699999999999 887 333321110 23589999999875321
Q ss_pred hhhcCCCCCccEEEECCCCCC---ccHHHHHHHHHHcCCcCCCeEE
Q 021116 223 EQFVGKDGPFDYMSVTPPYTA---VDYEVLMAQISKSALVGKDSFI 265 (317)
Q Consensus 223 ~~~~~~~~~fDlV~~dPPy~~---~~~~~~l~~L~~~~lLkpgG~i 265 (317)
..++||+|+=---+.. ..-.+..+.+. ++|+|||.+
T Consensus 113 -----~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~--~ll~p~g~~ 151 (218)
T PF05724_consen 113 -----DVGKFDLIYDRTFLCALPPEMRERYAQQLA--SLLKPGGRG 151 (218)
T ss_dssp -----CHHSEEEEEECSSTTTS-GGGHHHHHHHHH--HCEEEEEEE
T ss_pred -----hcCCceEEEEecccccCCHHHHHHHHHHHH--HHhCCCCcE
Confidence 1257999984321211 12234444444 389999993
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.22 E-value=1e-05 Score=74.47 Aligned_cols=107 Identities=15% Similarity=0.038 Sum_probs=70.1
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHH-h-H----------HHhCCCCceEEEEecHHHHHHHH
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIP-N-L----------EWTGFLDVSSIHTVRVETFLERA 222 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~-N-~----------~~~gl~~~v~ii~gD~~~~l~~~ 222 (317)
++.+||++|||.|.-.+.+++.|.. |++||+++.++ +.+.+ | + .... ...++++++|++++-...
T Consensus 43 ~~~rvLvPgCGkg~D~~~LA~~G~~-V~GvDlS~~Ai-~~~~~e~~~~~~~~~~~~~~~~~-~~~i~~~~gD~f~l~~~~ 119 (226)
T PRK13256 43 DSSVCLIPMCGCSIDMLFFLSKGVK-VIGIELSEKAV-LSFFSQNTINYEVIHGNDYKLYK-GDDIEIYVADIFNLPKIA 119 (226)
T ss_pred CCCeEEEeCCCChHHHHHHHhCCCc-EEEEecCHHHH-HHHHHHcCCCcceecccccceec-cCceEEEEccCcCCCccc
Confidence 4689999999999999999999985 99999999999 77644 2 0 0011 135899999998762100
Q ss_pred hhhcCCCCCccEEEECCCCCC---ccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 223 EQFVGKDGPFDYMSVTPPYTA---VDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 223 ~~~~~~~~~fDlV~~dPPy~~---~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
...+.||+|+--.-+.. ..-.+..+.+. ++|+|||.+++.+-
T Consensus 120 ----~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~--~lL~pgg~llll~~ 164 (226)
T PRK13256 120 ----NNLPVFDIWYDRGAYIALPNDLRTNYAKMML--EVCSNNTQILLLVM 164 (226)
T ss_pred ----cccCCcCeeeeehhHhcCCHHHHHHHHHHHH--HHhCCCcEEEEEEE
Confidence 01257898764322111 11233344443 37899998775543
|
|
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=98.20 E-value=3.3e-06 Score=80.62 Aligned_cols=114 Identities=17% Similarity=0.237 Sum_probs=56.9
Q ss_pred ecCCCCCCCCChH---HHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchH-HHHHHH-cCCCEEEEEeCCHHHHHHHHH
Q 021116 122 LSPKGMDVRPMME---VVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSV-GIEAIS-RGCSEVHFVEMDPWVVSNVLI 196 (317)
Q Consensus 122 ~~p~~~~~rpt~~---~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l-~Ieaas-~Ga~~V~aVDin~~al~~~ar 196 (317)
..|.+.- .|+.. .....+.+.|..... ......++||+|||.-.+ .+-.++ .|. +.+|.|+|+.++ +.|+
T Consensus 69 diP~~~L-cP~iP~R~nYi~~i~DlL~~~~~--~~~~~v~glDIGTGAscIYpLLg~~~~~W-~fvaTdID~~sl-~~A~ 143 (299)
T PF05971_consen 69 DIPEGRL-CPPIPNRLNYIHWIADLLASSNP--GIPEKVRGLDIGTGASCIYPLLGAKLYGW-SFVATDIDPKSL-ESAR 143 (299)
T ss_dssp ---TTS-----HHHHHHHHHHHHHHHT--TC--GCS---EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHH-HHHH
T ss_pred cCCCCCc-CCCCchhHHHHHHHHHHhhcccc--ccccceEeecCCccHHHHHHHHhhhhcCC-eEEEecCCHHHH-HHHH
Confidence 5565443 45432 233345555654210 001256899998887644 443333 455 699999999999 9999
Q ss_pred HhHHHh-CCCCceEEEEecHH-HHHHHHhhhcCCCCCccEEEECCCCCC
Q 021116 197 PNLEWT-GFLDVSSIHTVRVE-TFLERAEQFVGKDGPFDYMSVTPPYTA 243 (317)
Q Consensus 197 ~N~~~~-gl~~~v~ii~gD~~-~~l~~~~~~~~~~~~fDlV~~dPPy~~ 243 (317)
+|++.| +++++|+++...-. .++.. +....+.||+.++||||..
T Consensus 144 ~nv~~N~~L~~~I~l~~~~~~~~i~~~---i~~~~e~~dftmCNPPFy~ 189 (299)
T PF05971_consen 144 ENVERNPNLESRIELRKQKNPDNIFDG---IIQPNERFDFTMCNPPFYS 189 (299)
T ss_dssp HHHHHT-T-TTTEEEEE--ST-SSTTT---STT--S-EEEEEE-----S
T ss_pred HHHHhccccccceEEEEcCCccccchh---hhcccceeeEEecCCcccc
Confidence 999999 99999998865322 12211 1123468999999999865
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.9e-06 Score=68.92 Aligned_cols=99 Identities=17% Similarity=0.200 Sum_probs=44.1
Q ss_pred EEECCCcchHHHHHHH---cCC-CEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEE
Q 021116 160 LDLYSGTGSVGIEAIS---RGC-SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYM 235 (317)
Q Consensus 160 LDlgcGtG~l~Ieaas---~Ga-~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV 235 (317)
|++|+..|..++.+++ .+. .+++++|..+. . +..+++++..++.++++++++|..+.+.... .+++|+|
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~-~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~-----~~~~dli 73 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-D-EQAQEIIKKAGLSDRVEFIQGDSPDFLPSLP-----DGPIDLI 73 (106)
T ss_dssp --------------------------EEEESS--------------GGG-BTEEEEES-THHHHHHHH-----H--EEEE
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-c-cccchhhhhcCCCCeEEEEEcCcHHHHHHcC-----CCCEEEE
Confidence 6889888887765433 222 37999999996 3 4556666667777789999999998887653 3789999
Q ss_pred EECCCCCCccHHHHHHHHH-HcCCcCCCeEEEEE
Q 021116 236 SVTPPYTAVDYEVLMAQIS-KSALVGKDSFIVVE 268 (317)
Q Consensus 236 ~~dPPy~~~~~~~~l~~L~-~~~lLkpgG~ivv~ 268 (317)
++|.... ++.....+. ..+.|+|||+|++.
T Consensus 74 ~iDg~H~---~~~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 74 FIDGDHS---YEAVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp EEES------HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred EECCCCC---HHHHHHHHHHHHHHcCCCeEEEEe
Confidence 9997532 333333332 12589999999874
|
|
| >KOG1227 consensus Putative methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.6e-06 Score=82.24 Aligned_cols=103 Identities=17% Similarity=0.253 Sum_probs=77.8
Q ss_pred CCCeEEEECCCcchHHH-HHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 155 RPGRWLDLYSGTGSVGI-EAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~I-eaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
.+..|+|||+|.|.+++ .+.+.||+.|+|+|.||+++ +.+|+|++.|++.++..++.+|-... ..+...|
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~sv-EaLrR~~~~N~V~~r~~i~~gd~R~~--------~~~~~Ad 264 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSV-EALRRNAEANNVMDRCRITEGDNRNP--------KPRLRAD 264 (351)
T ss_pred ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHH-HHHHHHHHhcchHHHHHhhhcccccc--------Cccccch
Confidence 46889999999999999 57788999999999999999 99999999999988888888885532 2346788
Q ss_pred EEEECC-CCCCccHHHHHHHHHHcCCcCCCe-EEEEEeCC
Q 021116 234 YMSVTP-PYTAVDYEVLMAQISKSALVGKDS-FIVVEYPL 271 (317)
Q Consensus 234 lV~~dP-Py~~~~~~~~l~~L~~~~lLkpgG-~ivv~~~~ 271 (317)
-|.+.. |-........++.|. .+|| ++-+..+.
T Consensus 265 rVnLGLlPSse~~W~~A~k~Lk-----~eggsilHIHenV 299 (351)
T KOG1227|consen 265 RVNLGLLPSSEQGWPTAIKALK-----PEGGSILHIHENV 299 (351)
T ss_pred heeeccccccccchHHHHHHhh-----hcCCcEEEEeccc
Confidence 888864 333334555555543 2344 66676553
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=98.14 E-value=5.6e-05 Score=67.54 Aligned_cols=122 Identities=19% Similarity=0.115 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHH-HcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEE
Q 021116 134 EVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAI-SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHT 212 (317)
Q Consensus 134 ~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaa-s~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~ 212 (317)
+.+.+.+.+-+...... ...+.+++|+|+|.|-=|+.++ .+...+++.+|.+..-+ ...+.=++.+|++| +++++
T Consensus 29 ~~~~~Hi~DSL~~~~~~--~~~~~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~-~FL~~~~~~L~L~n-v~v~~ 104 (184)
T PF02527_consen 29 EIWERHILDSLALLPFL--PDFGKKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKV-AFLKEVVRELGLSN-VEVIN 104 (184)
T ss_dssp HHHHHHHHHHHGGGGCS---CCCSEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHH-HHHHHHHHHHT-SS-EEEEE
T ss_pred HHHHHHHHHHHHhhhhh--ccCCceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHH-HHHHHHHHHhCCCC-EEEEE
Confidence 44556787877553211 1123389999999998888644 34556799999999998 99999999999975 99999
Q ss_pred ecHHHHHHHHhhhcCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCCC
Q 021116 213 VRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 213 gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~ 272 (317)
+++++. .....||+|++= ....+..+++... ++++++|.+++--...
T Consensus 105 ~R~E~~--------~~~~~fd~v~aR---Av~~l~~l~~~~~--~~l~~~G~~l~~KG~~ 151 (184)
T PF02527_consen 105 GRAEEP--------EYRESFDVVTAR---AVAPLDKLLELAR--PLLKPGGRLLAYKGPD 151 (184)
T ss_dssp S-HHHT--------TTTT-EEEEEEE---SSSSHHHHHHHHG--GGEEEEEEEEEEESS-
T ss_pred eeeccc--------ccCCCccEEEee---hhcCHHHHHHHHH--HhcCCCCEEEEEcCCC
Confidence 999881 125789999995 3345677776654 5899999999887654
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=98.13 E-value=7.1e-05 Score=71.10 Aligned_cols=112 Identities=16% Similarity=0.158 Sum_probs=85.1
Q ss_pred CCCeEEEECCCcchHHHHHHHcC---CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCC
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRG---CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGP 231 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~G---a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~ 231 (317)
...+|||++||.|.--+.++... ..+|...|.++..+ +..++-++..|+++.++|.++|+++...... -...
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv-~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~----l~p~ 209 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINV-EKGRALIAERGLEDIARFEQGDAFDRDSLAA----LDPA 209 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHH-HHHHHHHHHcCCccceEEEecCCCCHhHhhc----cCCC
Confidence 56899999999999998887642 35899999999999 9999999999999877999999988643321 2467
Q ss_pred ccEEEECCCCCCc-c---HHHHHHHHHHcCCcCCCeEEEEEeCCCC
Q 021116 232 FDYMSVTPPYTAV-D---YEVLMAQISKSALVGKDSFIVVEYPLRT 273 (317)
Q Consensus 232 fDlV~~dPPy~~~-~---~~~~l~~L~~~~lLkpgG~ivv~~~~~~ 273 (317)
+|++++..=|... + ....+..+. ..+.|||+++...-.-+
T Consensus 210 P~l~iVsGL~ElF~Dn~lv~~sl~gl~--~al~pgG~lIyTgQPwH 253 (311)
T PF12147_consen 210 PTLAIVSGLYELFPDNDLVRRSLAGLA--RALEPGGYLIYTGQPWH 253 (311)
T ss_pred CCEEEEecchhhCCcHHHHHHHHHHHH--HHhCCCcEEEEcCCCCC
Confidence 8999987655432 1 233444444 47999999887654333
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00014 Score=69.17 Aligned_cols=105 Identities=20% Similarity=0.183 Sum_probs=81.2
Q ss_pred CeEEEECCCcchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHhHHHhC--C-CCceEEEEecHHHHHHHHhhhcCCCCCc
Q 021116 157 GRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTG--F-LDVSSIHTVRVETFLERAEQFVGKDGPF 232 (317)
Q Consensus 157 ~rVLDlgcGtG~l~Ieaas~G-a~~V~aVDin~~al~~~ar~N~~~~g--l-~~~v~ii~gD~~~~l~~~~~~~~~~~~f 232 (317)
++||=+|-|.|+..-++++-. ..+++.||+|+..+ +++++-+.... . +.+++++.+|..+++... ..+|
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi-~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~------~~~f 150 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVI-ELARKYLPEPSGGADDPRVEIIIDDGVEFLRDC------EEKF 150 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHH-HHHHHhccCcccccCCCceEEEeccHHHHHHhC------CCcC
Confidence 699999999999999988865 57899999999999 99998665432 2 368999999999999765 2489
Q ss_pred cEEEECC--CCCC--cc-HHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 233 DYMSVTP--PYTA--VD-YEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 233 DlV~~dP--Py~~--~~-~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
|+||+|- |-+. .. -.+..+.+. +.|+++|++++.+.
T Consensus 151 DvIi~D~tdp~gp~~~Lft~eFy~~~~--~~L~~~Gi~v~q~~ 191 (282)
T COG0421 151 DVIIVDSTDPVGPAEALFTEEFYEGCR--RALKEDGIFVAQAG 191 (282)
T ss_pred CEEEEcCCCCCCcccccCCHHHHHHHH--HhcCCCcEEEEecC
Confidence 9999963 2111 11 244555554 48999999999843
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.13 E-value=4.4e-05 Score=74.38 Aligned_cols=114 Identities=18% Similarity=0.161 Sum_probs=84.2
Q ss_pred CCCeEEEECCCcchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHhHHHh-----CC-CCceEEEEecHHHHHHHHhhhcC
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWT-----GF-LDVSSIHTVRVETFLERAEQFVG 227 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~G-a~~V~aVDin~~al~~~ar~N~~~~-----gl-~~~v~ii~gD~~~~l~~~~~~~~ 227 (317)
.-.+||=+|-|-|...-|+++.. ..+++.||.||+++ +.++.|...- .+ +.+++++..|+.+|++..
T Consensus 289 ~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~mi-ela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a----- 362 (508)
T COG4262 289 GARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMI-ELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTA----- 362 (508)
T ss_pred ccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHH-HHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhh-----
Confidence 35789999999999998988864 78999999999999 9999664332 12 247899999999999875
Q ss_pred CCCCccEEEECCCCCC-c----cHHHHHHHHHHcCCcCCCeEEEEEeCCCCCcc
Q 021116 228 KDGPFDYMSVTPPYTA-V----DYEVLMAQISKSALVGKDSFIVVEYPLRTDML 276 (317)
Q Consensus 228 ~~~~fDlV~~dPPy~~-~----~~~~~l~~L~~~~lLkpgG~ivv~~~~~~~l~ 276 (317)
.+.||.||+|-|--. . .|..-+=.+. ++.|+++|++++.....-.-+
T Consensus 363 -~~~fD~vIVDl~DP~tps~~rlYS~eFY~ll-~~~l~e~Gl~VvQags~y~tp 414 (508)
T COG4262 363 -ADMFDVVIVDLPDPSTPSIGRLYSVEFYRLL-SRHLAETGLMVVQAGSPYFTP 414 (508)
T ss_pred -cccccEEEEeCCCCCCcchhhhhhHHHHHHH-HHhcCcCceEEEecCCCccCC
Confidence 368999999865321 1 2332222232 368999999999877554333
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.8e-05 Score=76.77 Aligned_cols=119 Identities=12% Similarity=0.023 Sum_probs=71.2
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhC---------CCCceEEEEecHHHHHHHHhhh
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTG---------FLDVSSIHTVRVETFLERAEQF 225 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~g---------l~~~v~ii~gD~~~~l~~~~~~ 225 (317)
++.+|||||||-|.-..--...+..+++++|++..++ +.|++-.+... ..=...++.+|+....- ...+
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si-~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l-~~~~ 139 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESI-EEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESL-REKL 139 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHH-HHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHH-HCTS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHH-HHHHHHHHHhccccccccccccchhheeccccccchh-hhhc
Confidence 6789999999988766555566788999999999999 89988762211 11125678888764211 1111
Q ss_pred cCCCCCccEEEECCCCCC--ccHHHHHHHHH-HcCCcCCCeEEEEEeCCCCCc
Q 021116 226 VGKDGPFDYMSVTPPYTA--VDYEVLMAQIS-KSALVGKDSFIVVEYPLRTDM 275 (317)
Q Consensus 226 ~~~~~~fDlV~~dPPy~~--~~~~~~l~~L~-~~~lLkpgG~ivv~~~~~~~l 275 (317)
......||+|-+-=-.+. ...+..-.+|. .+..|+|||+++..++....+
T Consensus 140 ~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~~i 192 (331)
T PF03291_consen 140 PPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSDEI 192 (331)
T ss_dssp SSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHH
T ss_pred cccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHHHH
Confidence 222358999998633222 22222222332 135899999999988765544
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=98.09 E-value=4.8e-06 Score=78.55 Aligned_cols=72 Identities=18% Similarity=0.191 Sum_probs=56.7
Q ss_pred eEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEE
Q 021116 158 RWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSV 237 (317)
Q Consensus 158 rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~ 237 (317)
+|+|+|||.|.+...+...|...|.++|+|+.++ +..+.|.... ++.+|+.++.... ....+|+++.
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~-~~~~~N~~~~-------~~~~Di~~~~~~~-----~~~~~D~l~~ 68 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAA-ETYEANFPNK-------LIEGDITKIDEKD-----FIPDIDLLTG 68 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHH-HHHHHhCCCC-------CccCccccCchhh-----cCCCCCEEEe
Confidence 6899999999998877778888899999999998 9988886421 4567777654321 0256999999
Q ss_pred CCCCC
Q 021116 238 TPPYT 242 (317)
Q Consensus 238 dPPy~ 242 (317)
+||+.
T Consensus 69 gpPCq 73 (275)
T cd00315 69 GFPCQ 73 (275)
T ss_pred CCCCh
Confidence 99975
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.08 E-value=4e-05 Score=69.64 Aligned_cols=112 Identities=20% Similarity=0.155 Sum_probs=77.1
Q ss_pred HHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHc-CC--CEEEEEeCCHHHHHHHHHHhHHHhCC---------CC
Q 021116 139 AAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-GC--SEVHFVEMDPWVVSNVLIPNLEWTGF---------LD 206 (317)
Q Consensus 139 alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~-Ga--~~V~aVDin~~al~~~ar~N~~~~gl---------~~ 206 (317)
.+|+.|.... .++.++||+|+|||.++-.++.+ |+ ..+++||.-++.+ +.+++|++..-- ..
T Consensus 71 ~~le~L~~~L-----~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLV-e~Sk~nl~k~i~~~e~~~~~~~~ 144 (237)
T KOG1661|consen 71 TALEYLDDHL-----QPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELV-EYSKKNLDKDITTSESSSKLKRG 144 (237)
T ss_pred HHHHHHHHhh-----ccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHH-HHHHHHHHhhccCchhhhhhccC
Confidence 4455555321 46899999999999998765532 32 2249999999999 999999987641 13
Q ss_pred ceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 207 VSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 207 ~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
++.++.+|...... ...+||.|.+..- .....++++++ |+++|.+++--.
T Consensus 145 ~l~ivvGDgr~g~~-------e~a~YDaIhvGAa-a~~~pq~l~dq------L~~gGrllip~~ 194 (237)
T KOG1661|consen 145 ELSIVVGDGRKGYA-------EQAPYDAIHVGAA-ASELPQELLDQ------LKPGGRLLIPVG 194 (237)
T ss_pred ceEEEeCCccccCC-------ccCCcceEEEccC-ccccHHHHHHh------hccCCeEEEeec
Confidence 46788899876543 2468999999741 12244555554 578888877544
|
|
| >PHA01634 hypothetical protein | Back alignment and domain information |
|---|
Probab=98.06 E-value=8.9e-06 Score=68.50 Aligned_cols=74 Identities=14% Similarity=0.041 Sum_probs=61.5
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
..+++|+|+|++.|.-+|..+.+||++|+++|.++... +..++|++.|.+-|+..- .++ |- +.-+.||
T Consensus 27 vk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~-k~~een~k~nnI~DK~v~-~~e---W~-------~~Y~~~D 94 (156)
T PHA01634 27 VYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLR-KKWEEVCAYFNICDKAVM-KGE---WN-------GEYEDVD 94 (156)
T ss_pred ecCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHH-HHHHHHhhhheeeeceee-ccc---cc-------ccCCCcc
Confidence 57999999999999999999999999999999999998 999999999988766432 222 22 2247899
Q ss_pred EEEECC
Q 021116 234 YMSVTP 239 (317)
Q Consensus 234 lV~~dP 239 (317)
+..+|-
T Consensus 95 i~~iDC 100 (156)
T PHA01634 95 IFVMDC 100 (156)
T ss_pred eEEEEc
Confidence 999983
|
|
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=98.05 E-value=1.6e-05 Score=72.09 Aligned_cols=120 Identities=10% Similarity=0.039 Sum_probs=75.5
Q ss_pred EEEECCCcchHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEE
Q 021116 159 WLDLYSGTGSVGIEAISRGC-SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSV 237 (317)
Q Consensus 159 VLDlgcGtG~l~Ieaas~Ga-~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~ 237 (317)
|.|+||--|.+++.++.+|. .+|+++|+++..+ +.|++|++.+|+.+++++..+|..+.+.. .+..|.|++
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL-~~A~~~i~~~~l~~~i~~rlgdGL~~l~~-------~e~~d~ivI 72 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPL-EKAKENIAKYGLEDRIEVRLGDGLEVLKP-------GEDVDTIVI 72 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHH-HHHHHHHHHTT-TTTEEEEE-SGGGG--G-------GG---EEEE
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHH-HHHHHHHHHcCCcccEEEEECCcccccCC-------CCCCCEEEE
Confidence 68999999999999999885 5799999999999 99999999999999999999998776642 133788877
Q ss_pred CCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCCCCC-ccc--cCCCeEEEEEee
Q 021116 238 TPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTD-MLD--TCGCLVKIKDRR 289 (317)
Q Consensus 238 dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~~~-l~~--~~~~~~~~~~r~ 289 (317)
-.. +.....++++... ..+.....+++.-..... +-. ...+|.++++.-
T Consensus 73 AGM-GG~lI~~ILe~~~--~~~~~~~~lILqP~~~~~~LR~~L~~~gf~I~~E~l 124 (205)
T PF04816_consen 73 AGM-GGELIIEILEAGP--EKLSSAKRLILQPNTHAYELRRWLYENGFEIIDEDL 124 (205)
T ss_dssp EEE--HHHHHHHHHHTG--GGGTT--EEEEEESS-HHHHHHHHHHTTEEEEEEEE
T ss_pred ecC-CHHHHHHHHHhhH--HHhccCCeEEEeCCCChHHHHHHHHHCCCEEEEeEE
Confidence 421 1112333443322 234444466664443322 111 146788877654
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=98.03 E-value=1.7e-05 Score=66.30 Aligned_cols=58 Identities=16% Similarity=0.169 Sum_probs=50.2
Q ss_pred eEEEECCCcchHHHHHHHcCCC-EEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHH
Q 021116 158 RWLDLYSGTGSVGIEAISRGCS-EVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (317)
Q Consensus 158 rVLDlgcGtG~l~Ieaas~Ga~-~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~ 217 (317)
.+||+|||+|..++.++..+.. +|+++|.++.++ +.+++|++.+++.+ +++++..+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~-~~l~~~~~~n~~~~-v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAY-EILEENVKLNNLPN-VVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHH-HHHHHHHHHcCCCc-EEEEEeeeeC
Confidence 3899999999999988877653 899999999998 99999999998865 8888877653
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.02 E-value=3.9e-05 Score=70.29 Aligned_cols=69 Identities=17% Similarity=0.182 Sum_probs=53.1
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccE
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDl 234 (317)
...-+||+|||||..+-.+...|. ..++||+++.|+ +.|.+ +.. + -.++.+|+-+- +|...++||-
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~Gh-~wiGvDiSpsML-~~a~~--~e~--e--gdlil~DMG~G------lpfrpGtFDg 115 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSGH-QWIGVDISPSML-EQAVE--REL--E--GDLILCDMGEG------LPFRPGTFDG 115 (270)
T ss_pred CCcEEEEeccCCCcchheeccCCc-eEEeecCCHHHH-HHHHH--hhh--h--cCeeeeecCCC------CCCCCCccce
Confidence 467899999999999976666674 699999999999 99986 222 2 13677887654 3556799998
Q ss_pred EEE
Q 021116 235 MSV 237 (317)
Q Consensus 235 V~~ 237 (317)
||+
T Consensus 116 ~IS 118 (270)
T KOG1541|consen 116 VIS 118 (270)
T ss_pred EEE
Confidence 885
|
|
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.00 E-value=8.1e-06 Score=75.42 Aligned_cols=103 Identities=17% Similarity=0.139 Sum_probs=68.6
Q ss_pred eEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEE
Q 021116 158 RWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSV 237 (317)
Q Consensus 158 rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~ 237 (317)
.++|+|||+|..++-++.. .++|+|+|.++.++ +.|++.-...-.....+....++.+++ +.+++.|+|++
T Consensus 36 ~a~DvG~G~Gqa~~~iae~-~k~VIatD~s~~mL-~~a~k~~~~~y~~t~~~ms~~~~v~L~-------g~e~SVDlI~~ 106 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEH-YKEVIATDVSEAML-KVAKKHPPVTYCHTPSTMSSDEMVDLL-------GGEESVDLITA 106 (261)
T ss_pred eEEEeccCCCcchHHHHHh-hhhheeecCCHHHH-HHhhcCCCcccccCCcccccccccccc-------CCCcceeeehh
Confidence 8999999999666545444 57899999999999 988774322111111334444444433 33578999998
Q ss_pred CCCCCCccHHHHHHHHHHcCCcCCCe-EEEEEeCC
Q 021116 238 TPPYTAVDYEVLMAQISKSALVGKDS-FIVVEYPL 271 (317)
Q Consensus 238 dPPy~~~~~~~~l~~L~~~~lLkpgG-~ivv~~~~ 271 (317)
-=-.++.+.++..+.+. ++|+++| ++.+-+-.
T Consensus 107 Aqa~HWFdle~fy~~~~--rvLRk~Gg~iavW~Y~ 139 (261)
T KOG3010|consen 107 AQAVHWFDLERFYKEAY--RVLRKDGGLIAVWNYN 139 (261)
T ss_pred hhhHHhhchHHHHHHHH--HHcCCCCCEEEEEEcc
Confidence 65566677888887765 5777655 76665543
|
|
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.00 E-value=4.8e-05 Score=73.07 Aligned_cols=135 Identities=13% Similarity=0.051 Sum_probs=89.2
Q ss_pred CCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhC-CCC--
Q 021116 130 RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTG-FLD-- 206 (317)
Q Consensus 130 rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~g-l~~-- 206 (317)
|-..-.++..+.+.... ++..++|||||-|.=.+---+.|+.+++++||..-.+ +.|++-.+... ..+
T Consensus 100 RnfNNwIKs~LI~~y~~--------~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI-~qa~~RYrdm~~r~~~~ 170 (389)
T KOG1975|consen 100 RNFNNWIKSVLINLYTK--------RGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSI-NQARKRYRDMKNRFKKF 170 (389)
T ss_pred hhhhHHHHHHHHHHHhc--------cccccceeccCCcccHhHhhhhcccceEeeehhhccH-HHHHHHHHHHHhhhhcc
Confidence 33344455556555543 5788999999999988877778888999999999998 99988655332 212
Q ss_pred --ceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCC--CccHHHHHHHHH-HcCCcCCCeEEEEEeCCCCC
Q 021116 207 --VSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYT--AVDYEVLMAQIS-KSALVGKDSFIVVEYPLRTD 274 (317)
Q Consensus 207 --~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~--~~~~~~~l~~L~-~~~lLkpgG~ivv~~~~~~~ 274 (317)
.+.++.+|+....-. ..+...+++||+|-+-=-++ ....+.+-.+|. .+..|+|||+++-..+...-
T Consensus 171 ~f~a~f~~~Dc~~~~l~-d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd~ 242 (389)
T KOG1975|consen 171 IFTAVFIAADCFKERLM-DLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSDV 242 (389)
T ss_pred cceeEEEEeccchhHHH-HhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHHH
Confidence 368999998654211 11223345599998863333 233443333333 34689999999988775443
|
|
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.97 E-value=4.5e-05 Score=75.37 Aligned_cols=108 Identities=18% Similarity=0.233 Sum_probs=77.2
Q ss_pred CCCCeEEEECCCcchHHHHHHH--cCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCC
Q 021116 154 LRPGRWLDLYSGTGSVGIEAIS--RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGP 231 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas--~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~ 231 (317)
.++.||||+||-.|.-+...++ .+-..|+|.|.|...+ ...+.|+.+.|+.+ ..+.+.|..++.... ..++
T Consensus 240 q~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~-~~l~~n~~rlGv~n-tiv~n~D~~ef~~~~-----~~~~ 312 (460)
T KOG1122|consen 240 QPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRL-KSLKANLHRLGVTN-TIVSNYDGREFPEKE-----FPGS 312 (460)
T ss_pred CCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHH-HHHHHHHHHhCCCc-eEEEccCcccccccc-----cCcc
Confidence 4689999999999977655332 3445699999999999 99999999999976 567778877553221 1248
Q ss_pred ccEEEECCCCCC-cc------------------HHHHHHHHH--HcCCcCCCeEEEEE
Q 021116 232 FDYMSVTPPYTA-VD------------------YEVLMAQIS--KSALVGKDSFIVVE 268 (317)
Q Consensus 232 fDlV~~dPPy~~-~~------------------~~~~l~~L~--~~~lLkpgG~ivv~ 268 (317)
||-|++|.|... +. +..+-+.|. +..++++||+||-+
T Consensus 313 fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYS 370 (460)
T KOG1122|consen 313 FDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYS 370 (460)
T ss_pred cceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEE
Confidence 999999999864 10 111122221 34689999998754
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00011 Score=75.14 Aligned_cols=109 Identities=10% Similarity=0.037 Sum_probs=81.7
Q ss_pred CCCeEEEECCCcchHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGC-SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga-~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
.+..+||+|||.|.+.++.+.... ..++|||+....+ ..+...+...|+.| +.++++|+..+...+ .+.++|
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~-~~~~~~~~~~~l~N-~~~~~~~~~~~~~~~-----~~~sv~ 419 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGV-ANVLKLAGEQNITN-FLLFPNNLDLILNDL-----PNNSLD 419 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHH-HHHHHHHHHcCCCe-EEEEcCCHHHHHHhc-----Cccccc
Confidence 467899999999999999877643 4699999999988 77777777788865 889999987655443 356799
Q ss_pred EEEECC--CCCCc-------cHHHHHHHHHHcCCcCCCeEEEEEeCCC
Q 021116 234 YMSVTP--PYTAV-------DYEVLMAQISKSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 234 lV~~dP--Py~~~-------~~~~~l~~L~~~~lLkpgG~ivv~~~~~ 272 (317)
.|+++= |+.+. ...+.++.+. ++|++||.|.+.++..
T Consensus 420 ~i~i~FPDPWpKkrh~krRl~~~~fl~~~~--~~Lk~gG~i~~~TD~~ 465 (506)
T PRK01544 420 GIYILFPDPWIKNKQKKKRIFNKERLKILQ--DKLKDNGNLVFASDIE 465 (506)
T ss_pred EEEEECCCCCCCCCCccccccCHHHHHHHH--HhcCCCCEEEEEcCCH
Confidence 988842 24332 1355666665 4899999999987744
|
|
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00021 Score=66.32 Aligned_cols=109 Identities=16% Similarity=0.205 Sum_probs=60.6
Q ss_pred CCCCeEEEECCCcchHHHHH-HHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCc
Q 021116 154 LRPGRWLDLYSGTGSVGIEA-ISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF 232 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Iea-as~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~f 232 (317)
+.|+++|=+|=.- ..++.+ +....++|+.+|+|++.+ +..++.++..|+. ++.+..|+.+-+... -.++|
T Consensus 43 L~gk~il~lGDDD-LtSlA~al~~~~~~I~VvDiDeRll-~fI~~~a~~~gl~--i~~~~~DlR~~LP~~-----~~~~f 113 (243)
T PF01861_consen 43 LEGKRILFLGDDD-LTSLALALTGLPKRITVVDIDERLL-DFINRVAEEEGLP--IEAVHYDLRDPLPEE-----LRGKF 113 (243)
T ss_dssp STT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHH-HHHHHHHHHHT----EEEE---TTS---TT-----TSS-B
T ss_pred ccCCEEEEEcCCc-HHHHHHHhhCCCCeEEEEEcCHHHH-HHHHHHHHHcCCc--eEEEEecccccCCHH-----HhcCC
Confidence 5789998876433 344443 344567899999999999 9999999999985 999999998876532 14789
Q ss_pred cEEEECCCCCCccHHHHHHHHHHcCCc-CCCeEEEEEeCCCC
Q 021116 233 DYMSVTPPYTAVDYEVLMAQISKSALV-GKDSFIVVEYPLRT 273 (317)
Q Consensus 233 DlV~~dPPy~~~~~~~~l~~L~~~~lL-kpgG~ivv~~~~~~ 273 (317)
|+++.||||......-.+..-.+ .| .+|+..++.....+
T Consensus 114 D~f~TDPPyT~~G~~LFlsRgi~--~Lk~~g~~gy~~~~~~~ 153 (243)
T PF01861_consen 114 DVFFTDPPYTPEGLKLFLSRGIE--ALKGEGCAGYFGFTHKE 153 (243)
T ss_dssp SEEEE---SSHHHHHHHHHHHHH--TB-STT-EEEEEE-TTT
T ss_pred CEEEeCCCCCHHHHHHHHHHHHH--HhCCCCceEEEEEecCc
Confidence 99999999975332222222222 23 44557777776554
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00016 Score=66.22 Aligned_cols=116 Identities=21% Similarity=0.146 Sum_probs=86.8
Q ss_pred ChHHHHHHHHHHHhhcCCCCCCCC--CCeEEEECCCcchHHHHHH-HcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCce
Q 021116 132 MMEVVKGAAFDILQSAGGCPASLR--PGRWLDLYSGTGSVGIEAI-SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVS 208 (317)
Q Consensus 132 t~~~v~~alf~~L~~~~~~~~~~~--~~rVLDlgcGtG~l~Ieaa-s~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v 208 (317)
..+.+.+.+.+.+..... .. +.+++|+|+|.|-=|+.++ .....+|+.+|.+...+ ...++=.+.+|++| +
T Consensus 46 ~~e~~~rHilDSl~~~~~----~~~~~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~-~FL~~~~~eL~L~n-v 119 (215)
T COG0357 46 PEELWQRHILDSLVLLPY----LDGKAKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKI-AFLREVKKELGLEN-V 119 (215)
T ss_pred HHHHHHHHHHHHhhhhhc----ccccCCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHH-HHHHHHHHHhCCCC-e
Confidence 346677788887765311 22 5899999999998888744 44344599999999998 99999999999965 9
Q ss_pred EEEEecHHHHHHHHhhhcCCCCC-ccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEE
Q 021116 209 SIHTVRVETFLERAEQFVGKDGP-FDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIV 266 (317)
Q Consensus 209 ~ii~gD~~~~l~~~~~~~~~~~~-fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~iv 266 (317)
+++++.++++-.. .. ||+|.+- ....+..+.+... +++++||.++
T Consensus 120 ~i~~~RaE~~~~~--------~~~~D~vtsR---Ava~L~~l~e~~~--pllk~~g~~~ 165 (215)
T COG0357 120 EIVHGRAEEFGQE--------KKQYDVVTSR---AVASLNVLLELCL--PLLKVGGGFL 165 (215)
T ss_pred EEehhhHhhcccc--------cccCcEEEee---hccchHHHHHHHH--HhcccCCcch
Confidence 9999999987532 23 9999985 3345566666554 5899988865
|
|
| >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.80 E-value=4.2e-05 Score=77.86 Aligned_cols=103 Identities=16% Similarity=0.150 Sum_probs=72.9
Q ss_pred CCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHc---C--CCEEEEEeCCHHHHHHHHHHhHHHhCC
Q 021116 130 RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR---G--CSEVHFVEMDPWVVSNVLIPNLEWTGF 204 (317)
Q Consensus 130 rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~---G--a~~V~aVDin~~al~~~ar~N~~~~gl 204 (317)
..|...|.+.+..++.+ .+..+|+|++||||++-+.+... . -...+|.|+++... .+|+-|+-.+|+
T Consensus 168 fyTP~~v~~liv~~l~~-------~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~-~l~~mN~~lhgi 239 (489)
T COG0286 168 FYTPREVSELIVELLDP-------EPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTY-RLAKMNLILHGI 239 (489)
T ss_pred cCChHHHHHHHHHHcCC-------CCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHH-HHHHHHHHHhCC
Confidence 45666777788777765 24559999999999998876542 1 13599999999998 999999999998
Q ss_pred CCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCC
Q 021116 205 LDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYT 242 (317)
Q Consensus 205 ~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~ 242 (317)
...+.+..+|...-..... ....+.||+|++||||.
T Consensus 240 ~~~~~i~~~dtl~~~~~~~--~~~~~~~D~viaNPPf~ 275 (489)
T COG0286 240 EGDANIRHGDTLSNPKHDD--KDDKGKFDFVIANPPFS 275 (489)
T ss_pred CccccccccccccCCcccc--cCCccceeEEEeCCCCC
Confidence 6334556665432211000 01236799999999996
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.78 E-value=6.5e-05 Score=68.79 Aligned_cols=95 Identities=11% Similarity=0.004 Sum_probs=64.3
Q ss_pred CCCeEEEECCCcchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
...+|+|+|+|+|.++++++++. .-+++..|. |..+ +.+++ .++++++.+|+++-+ +.+|
T Consensus 100 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~-~~~~~-------~~rv~~~~gd~f~~~----------P~~D 160 (241)
T PF00891_consen 100 GFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVI-EQAKE-------ADRVEFVPGDFFDPL----------PVAD 160 (241)
T ss_dssp TSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHH-CCHHH-------TTTEEEEES-TTTCC----------SSES
T ss_pred CccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhh-hcccc-------ccccccccccHHhhh----------cccc
Confidence 45689999999999999887653 347999999 7777 77777 578999999987322 3399
Q ss_pred EEEECCCCCCcc---HHHHHHHHHHcCCcCCC--eEEEEEeC
Q 021116 234 YMSVTPPYTAVD---YEVLMAQISKSALVGKD--SFIVVEYP 270 (317)
Q Consensus 234 lV~~dPPy~~~~---~~~~l~~L~~~~lLkpg--G~ivv~~~ 270 (317)
++++-=-.+... -..+|+.+. ..|+|| |.|++...
T Consensus 161 ~~~l~~vLh~~~d~~~~~iL~~~~--~al~pg~~g~llI~e~ 200 (241)
T PF00891_consen 161 VYLLRHVLHDWSDEDCVKILRNAA--AALKPGKDGRLLIIEM 200 (241)
T ss_dssp EEEEESSGGGS-HHHHHHHHHHHH--HHSEECTTEEEEEEEE
T ss_pred ceeeehhhhhcchHHHHHHHHHHH--HHhCCCCCCeEEEEee
Confidence 999852222112 233444443 468988 88877654
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.73 E-value=4.2e-05 Score=76.86 Aligned_cols=107 Identities=18% Similarity=0.243 Sum_probs=83.0
Q ss_pred CCCeEEEECCCcchHHHHHHH--cCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCc
Q 021116 155 RPGRWLDLYSGTGSVGIEAIS--RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF 232 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas--~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~f 232 (317)
++-+|||-.|+||.-+|..+. .|..+|++-|.|+.++ +..++|++.|+.++.++....|+....-.. +.....|
T Consensus 109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV-~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~---~~~~~~F 184 (525)
T KOG1253|consen 109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAV-TSIQRNVELNGVEDIVEPHHSDANVLMYEH---PMVAKFF 184 (525)
T ss_pred CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHH-HHHHhhhhhcCchhhcccccchHHHHHHhc---ccccccc
Confidence 467899999999999998665 3667899999999999 999999999999998999999988765332 1223689
Q ss_pred cEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 233 DYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 233 DlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
|+|=+|| |+.. ...++... +-+..||++.+.+.
T Consensus 185 DvIDLDP-yGs~--s~FLDsAv--qav~~gGLL~vT~T 217 (525)
T KOG1253|consen 185 DVIDLDP-YGSP--SPFLDSAV--QAVRDGGLLCVTCT 217 (525)
T ss_pred ceEecCC-CCCc--cHHHHHHH--HHhhcCCEEEEEec
Confidence 9999996 7643 22333322 24688999998774
|
|
| >PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2 | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00017 Score=67.82 Aligned_cols=95 Identities=17% Similarity=0.247 Sum_probs=64.4
Q ss_pred eEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEE
Q 021116 158 RWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSV 237 (317)
Q Consensus 158 rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~ 237 (317)
+++|||||.|.+.+-+-..|...|.++|+|+.++ +.-+.|.. ....+|+.++.... ++ . .+|+++.
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~-~~y~~N~~--------~~~~~Di~~~~~~~--l~--~-~~D~l~g 67 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDAC-ETYKANFP--------EVICGDITEIDPSD--LP--K-DVDLLIG 67 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHH-HHHHHHHT--------EEEESHGGGCHHHH--HH--H-T-SEEEE
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHH-Hhhhhccc--------cccccccccccccc--cc--c-cceEEEe
Confidence 6999999999999877778888899999999998 89888874 46778988775432 11 1 5999999
Q ss_pred CCCCCCc---------------cHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 238 TPPYTAV---------------DYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 238 dPPy~~~---------------~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
.||.... .+.+.++.+. .++|.- +++|.-
T Consensus 68 gpPCQ~fS~ag~~~~~~d~r~~L~~~~~~~v~---~~~Pk~-~~~ENV 111 (335)
T PF00145_consen 68 GPPCQGFSIAGKRKGFDDPRNSLFFEFLRIVK---ELKPKY-FLLENV 111 (335)
T ss_dssp E---TTTSTTSTHHCCCCHTTSHHHHHHHHHH---HHS-SE-EEEEEE
T ss_pred ccCCceEeccccccccccccchhhHHHHHHHh---hccceE-EEeccc
Confidence 9996421 1345555554 367755 445543
|
1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A .... |
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00041 Score=65.30 Aligned_cols=99 Identities=9% Similarity=-0.008 Sum_probs=71.4
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHh--CCC-CceEEEEecHHHHHHHHhhhcCCCC
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWT--GFL-DVSSIHTVRVETFLERAEQFVGKDG 230 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~--gl~-~~v~ii~gD~~~~l~~~~~~~~~~~ 230 (317)
...++||=+|-|-|...-|.++-. .+|+.||+|++.+ +.+++-+-.. +++ .|++++. +.... ..+
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~-~~v~mVeID~~Vv-~~~k~~lP~~~~~~~DpRv~l~~-----~~~~~-----~~~ 138 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYD-THVDFVQADEKIL-DSFISFFPHFHEVKNNKNFTHAK-----QLLDL-----DIK 138 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcC-CeeEEEECCHHHH-HHHHHHCHHHHHhhcCCCEEEee-----hhhhc-----cCC
Confidence 356899999999999999998864 3899999999999 9999943322 233 4677775 12111 136
Q ss_pred CccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 231 PFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 231 ~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
+||+||+|-.|....| +.+. +.|+|||++++...
T Consensus 139 ~fDVIIvDs~~~~~fy----~~~~--~~L~~~Gi~v~Qs~ 172 (262)
T PRK00536 139 KYDLIICLQEPDIHKI----DGLK--RMLKEDGVFISVAK 172 (262)
T ss_pred cCCEEEEcCCCChHHH----HHHH--HhcCCCcEEEECCC
Confidence 8999999965553333 3333 36899999998654
|
|
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=97.72 E-value=7.5e-05 Score=68.22 Aligned_cols=109 Identities=20% Similarity=0.166 Sum_probs=70.3
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccE
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDl 234 (317)
...+.||.|||.|.++-.++..-+.+|..||.++.-+ +.|++.+...+ ....++++.-+.+|... ..+||+
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl-~~a~~~l~~~~-~~v~~~~~~gLQ~f~P~-------~~~YDl 125 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFL-EQAKEYLGKDN-PRVGEFYCVGLQDFTPE-------EGKYDL 125 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHH-HHHHHHTCCGG-CCEEEEEES-GGG-----------TT-EEE
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHH-HHHHHHhcccC-CCcceEEecCHhhccCC-------CCcEeE
Confidence 4679999999999999877766688999999999999 99987665421 23357888888888642 368999
Q ss_pred EEECCCCCCccHHHHHHHHH-HcCCcCCCeEEEEEeCCC
Q 021116 235 MSVTPPYTAVDYEVLMAQIS-KSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 235 V~~dPPy~~~~~~~~l~~L~-~~~lLkpgG~ivv~~~~~ 272 (317)
|.+.---..=.-+++++.|. ....|+|+|+|++-.+..
T Consensus 126 IW~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~ 164 (218)
T PF05891_consen 126 IWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVS 164 (218)
T ss_dssp EEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred EEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCC
Confidence 99962111001245555553 134689999999977643
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00015 Score=62.88 Aligned_cols=80 Identities=10% Similarity=-0.036 Sum_probs=55.6
Q ss_pred EEEeCCHHHHHHHHHHhHHHh--CCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCC-CCccHHHHHHHHHHcCC
Q 021116 182 HFVEMDPWVVSNVLIPNLEWT--GFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPY-TAVDYEVLMAQISKSAL 258 (317)
Q Consensus 182 ~aVDin~~al~~~ar~N~~~~--gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy-~~~~~~~~l~~L~~~~l 258 (317)
+++|+++.++ +.|+++.+.. +..++++++++|+.+. +..+++||+|++.--. ...+....++.+. ++
T Consensus 1 ~GvD~S~~ML-~~A~~~~~~~~~~~~~~i~~~~~d~~~l-------p~~~~~fD~v~~~~~l~~~~d~~~~l~ei~--rv 70 (160)
T PLN02232 1 MGLDFSSEQL-AVAATRQSLKARSCYKCIEWIEGDAIDL-------PFDDCEFDAVTMGYGLRNVVDRLRAMKEMY--RV 70 (160)
T ss_pred CeEcCCHHHH-HHHHHhhhcccccCCCceEEEEechhhC-------CCCCCCeeEEEecchhhcCCCHHHHHHHHH--HH
Confidence 4799999999 9998776532 2234689999998764 2345789999986211 1224555666664 58
Q ss_pred cCCCeEEEEEeCC
Q 021116 259 VGKDSFIVVEYPL 271 (317)
Q Consensus 259 LkpgG~ivv~~~~ 271 (317)
|+|||.+++..-.
T Consensus 71 LkpGG~l~i~d~~ 83 (160)
T PLN02232 71 LKPGSRVSILDFN 83 (160)
T ss_pred cCcCeEEEEEECC
Confidence 9999999876543
|
|
| >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00036 Score=61.95 Aligned_cols=54 Identities=15% Similarity=0.101 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHH
Q 021116 134 EVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIP 197 (317)
Q Consensus 134 ~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~ 197 (317)
..+.+.+..... .+++.|||+|||||+.+++|...|- +.+++|++++.+ ++|++
T Consensus 178 ~~l~~~lI~~~t--------~~gdiVlDpF~GSGTT~~aa~~l~R-~~ig~E~~~~y~-~~a~~ 231 (231)
T PF01555_consen 178 VELIERLIKAST--------NPGDIVLDPFAGSGTTAVAAEELGR-RYIGIEIDEEYC-EIAKK 231 (231)
T ss_dssp HHHHHHHHHHHS---------TT-EEEETT-TTTHHHHHHHHTT--EEEEEESSHHHH-HHHHH
T ss_pred HHHHHHHHHhhh--------ccceeeehhhhccChHHHHHHHcCC-eEEEEeCCHHHH-HHhcC
Confidence 445555554443 3689999999999999998888874 699999999998 88864
|
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... |
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00018 Score=66.52 Aligned_cols=101 Identities=14% Similarity=0.107 Sum_probs=67.4
Q ss_pred CCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEE-ecHHHHHHHHhhhcCCCCC
Q 021116 153 SLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHT-VRVETFLERAEQFVGKDGP 231 (317)
Q Consensus 153 ~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~-gD~~~~l~~~~~~~~~~~~ 231 (317)
+.++.++||+|+-||.|+-.++.+||++|+|||....-++.-.|. +.++.+++ .++..+-... -.+.
T Consensus 77 ~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~-------d~rV~~~E~tN~r~l~~~~-----~~~~ 144 (245)
T COG1189 77 DVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRN-------DPRVIVLERTNVRYLTPED-----FTEK 144 (245)
T ss_pred CCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhc-------CCcEEEEecCChhhCCHHH-----cccC
Confidence 368999999999999999999999999999999987655122222 23454444 3444332211 1246
Q ss_pred ccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 232 FDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 232 fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
.|++++|-.|. .+..++..+. .++++++.++.-.
T Consensus 145 ~d~~v~DvSFI--SL~~iLp~l~--~l~~~~~~~v~Lv 178 (245)
T COG1189 145 PDLIVIDVSFI--SLKLILPALL--LLLKDGGDLVLLV 178 (245)
T ss_pred CCeEEEEeehh--hHHHHHHHHH--HhcCCCceEEEEe
Confidence 89999998664 3445555554 3677777766543
|
|
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00035 Score=67.98 Aligned_cols=69 Identities=17% Similarity=0.093 Sum_probs=53.4
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
.++.++||+||++|.++-.++++|+ +|++||..+-+ . ++.. ..+|+.+++|...+... .+.+|
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~l~--~----~L~~---~~~V~h~~~d~fr~~p~-------~~~vD 272 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGPMA--Q----SLMD---TGQVEHLRADGFKFRPP-------RKNVD 272 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechhcC--H----hhhC---CCCEEEEeccCcccCCC-------CCCCC
Confidence 4689999999999999999999998 79999966533 2 2222 24688999998776421 46799
Q ss_pred EEEECC
Q 021116 234 YMSVTP 239 (317)
Q Consensus 234 lV~~dP 239 (317)
++++|.
T Consensus 273 wvVcDm 278 (357)
T PRK11760 273 WLVCDM 278 (357)
T ss_pred EEEEec
Confidence 999995
|
|
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0012 Score=60.57 Aligned_cols=107 Identities=20% Similarity=0.085 Sum_probs=78.8
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
.++.+||++|=|.|.+.-....+...+-+-||.+|..+ +..|.+.= +-.++|.++.+-..+.++.+. ++.||
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~-krmr~~gw--~ek~nViil~g~WeDvl~~L~-----d~~FD 171 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVL-KRMRDWGW--REKENVIILEGRWEDVLNTLP-----DKHFD 171 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHH-HHHHhccc--ccccceEEEecchHhhhcccc-----ccCcc
Confidence 36899999999999988755556666677899999998 88887642 223568899999888887663 57799
Q ss_pred EEEECCCCCCccHHHHHHHHH-HcCCcCCCeEEEEEeC
Q 021116 234 YMSVTPPYTAVDYEVLMAQIS-KSALVGKDSFIVVEYP 270 (317)
Q Consensus 234 lV~~dPPy~~~~~~~~l~~L~-~~~lLkpgG~ivv~~~ 270 (317)
-|+-|- |. ..|+++.+.-. .-++|||+|++-....
T Consensus 172 GI~yDT-y~-e~yEdl~~~hqh~~rLLkP~gv~SyfNg 207 (271)
T KOG1709|consen 172 GIYYDT-YS-ELYEDLRHFHQHVVRLLKPEGVFSYFNG 207 (271)
T ss_pred eeEeec-hh-hHHHHHHHHHHHHhhhcCCCceEEEecC
Confidence 999995 32 34555554332 2379999999866544
|
|
| >KOG2078 consensus tRNA modification enzyme [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0001 Score=73.05 Aligned_cols=65 Identities=20% Similarity=0.353 Sum_probs=59.8
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCc-eEEEEecHHHHHH
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDV-SSIHTVRVETFLE 220 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~-v~ii~gD~~~~l~ 220 (317)
..+..|-|+|||.|-+++.|+..|+ +|++-|.|++++ ++++.|+..|.+... +++++.|+.+++.
T Consensus 248 k~gevv~D~FaGvGPfa~Pa~kK~c-rV~aNDLNpesi-k~Lk~ni~lNkv~~~~iei~Nmda~~Flr 313 (495)
T KOG2078|consen 248 KPGEVVCDVFAGVGPFALPAAKKGC-RVYANDLNPESI-KWLKANIKLNKVDPSAIEIFNMDAKDFLR 313 (495)
T ss_pred CCcchhhhhhcCcCccccchhhcCc-EEEecCCCHHHH-HHHHHhccccccchhheeeecccHHHHhh
Confidence 3578999999999999999999986 699999999999 999999999999866 9999999999984
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00095 Score=60.21 Aligned_cols=121 Identities=9% Similarity=0.114 Sum_probs=66.2
Q ss_pred CCCeEEEECCCcc----hHHHHHHH---cCCC---EEEEEeCCHHHHHHHHHHhH---HH-hCC----------------
Q 021116 155 RPGRWLDLYSGTG----SVGIEAIS---RGCS---EVHFVEMDPWVVSNVLIPNL---EW-TGF---------------- 204 (317)
Q Consensus 155 ~~~rVLDlgcGtG----~l~Ieaas---~Ga~---~V~aVDin~~al~~~ar~N~---~~-~gl---------------- 204 (317)
+.-+|+..||+|| ++++.+.. .... +|+|.|+|+.++ +.|++-. .. -++
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L-~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~ 109 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSAL-EKARAGIYPERSLRGLPPAYLRRYFTERDGGG 109 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHH-HHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCC
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHH-HHHHhCCCCHHHHhhhHHHHHHHhccccCCCc
Confidence 4579999999999 55554443 1222 799999999999 8887521 00 011
Q ss_pred -------CCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCc---cHHHHHHHHHHcCCcCCCeEEEEEeCCCCC
Q 021116 205 -------LDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAV---DYEVLMAQISKSALVGKDSFIVVEYPLRTD 274 (317)
Q Consensus 205 -------~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~---~~~~~l~~L~~~~lLkpgG~ivv~~~~~~~ 274 (317)
.++|+|.+.|+.+... ..+.||+||+---...- .-..+++.+. ..|+|||++++.+.. .
T Consensus 110 ~~v~~~lr~~V~F~~~NL~~~~~-------~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~--~~L~pgG~L~lG~sE--~ 178 (196)
T PF01739_consen 110 YRVKPELRKMVRFRRHNLLDPDP-------PFGRFDLIFCRNVLIYFDPETQQRVLRRLH--RSLKPGGYLFLGHSE--S 178 (196)
T ss_dssp TTE-HHHHTTEEEEE--TT-S-------------EEEEEE-SSGGGS-HHHHHHHHHHHG--GGEEEEEEEEE-TT----
T ss_pred eeEChHHcCceEEEecccCCCCc-------ccCCccEEEecCEEEEeCHHHHHHHHHHHH--HHcCCCCEEEEecCc--c
Confidence 2357777777766111 23689999994221111 2345566665 589999999998764 3
Q ss_pred ccccCCCeEEEEE
Q 021116 275 MLDTCGCLVKIKD 287 (317)
Q Consensus 275 l~~~~~~~~~~~~ 287 (317)
+......|+.++.
T Consensus 179 l~~~~~~f~~~~~ 191 (196)
T PF01739_consen 179 LPELPDLFEPVDS 191 (196)
T ss_dssp STTT-TTCEEECT
T ss_pred CCCCCCCeEEcCC
Confidence 3334456665543
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=97.39 E-value=4.8e-05 Score=66.68 Aligned_cols=104 Identities=17% Similarity=0.204 Sum_probs=57.5
Q ss_pred CCCeEEEECCCcchHHHHHHHcC--CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHH--HHHHhh-hcCCC
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRG--CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF--LERAEQ-FVGKD 229 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~G--a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~--l~~~~~-~~~~~ 229 (317)
.+.+|||+||++|+++-.++.++ ..+|++||+.+..- . .| +..+++|+.+. ...... +....
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~--~--~~---------~~~i~~d~~~~~~~~~i~~~~~~~~ 89 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDP--L--QN---------VSFIQGDITNPENIKDIRKLLPESG 89 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS-----TT---------EEBTTGGGEEEEHSHHGGGSHGTTT
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccccc--c--cc---------eeeeecccchhhHHHhhhhhccccc
Confidence 45899999999999998888887 56899999998631 1 12 23333333211 011110 11123
Q ss_pred CCccEEEECC-CCCCcc--------HHHHHHHHH-HcCCcCCCeEEEEEeCC
Q 021116 230 GPFDYMSVTP-PYTAVD--------YEVLMAQIS-KSALVGKDSFIVVEYPL 271 (317)
Q Consensus 230 ~~fDlV~~dP-Py~~~~--------~~~~l~~L~-~~~lLkpgG~ivv~~~~ 271 (317)
..||+|++|. |...+. ..-.+..+. ...+|++||.+++-.-.
T Consensus 90 ~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~ 141 (181)
T PF01728_consen 90 EKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFK 141 (181)
T ss_dssp CSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESS
T ss_pred cCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEecc
Confidence 6899999997 222221 111122221 22478999988876544
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00034 Score=64.87 Aligned_cols=109 Identities=9% Similarity=0.121 Sum_probs=70.6
Q ss_pred eEEEECCCcchHHHHHHHcCC---CEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccE
Q 021116 158 RWLDLYSGTGSVGIEAISRGC---SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (317)
Q Consensus 158 rVLDlgcGtG~l~Ieaas~Ga---~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDl 234 (317)
++|++|||.|.....+++-.. -.|+++|.+|.|+ +..++|...+- +++.....|+..-- + +-+...+++|+
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai-~~vk~~~~~~e--~~~~afv~Dlt~~~--~-~~~~~~~svD~ 147 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAI-ELVKKSSGYDE--SRVEAFVWDLTSPS--L-KEPPEEGSVDI 147 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHH-HHHHhccccch--hhhcccceeccchh--c-cCCCCcCccce
Confidence 799999999999988776432 3799999999999 99999987653 34444444543221 0 11223467887
Q ss_pred EEECC---CCCCccHHHHHHHHHHcCCcCCCeEEEEEeCCCCC
Q 021116 235 MSVTP---PYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTD 274 (317)
Q Consensus 235 V~~dP---Py~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~~~ 274 (317)
|.+== --+.......++.+. ++|+|||.+++-.-.+-+
T Consensus 148 it~IFvLSAi~pek~~~a~~nl~--~llKPGG~llfrDYg~~D 188 (264)
T KOG2361|consen 148 ITLIFVLSAIHPEKMQSVIKNLR--TLLKPGGSLLFRDYGRYD 188 (264)
T ss_pred EEEEEEEeccChHHHHHHHHHHH--HHhCCCcEEEEeecccch
Confidence 76520 001123455555554 589999999987444433
|
|
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0012 Score=55.90 Aligned_cols=63 Identities=16% Similarity=0.025 Sum_probs=49.9
Q ss_pred CCCCeEEEECCCcchHHHHHHH-----cCCCEEEEEeCCHHHHHHHHHHhHHHhC--CCCceEEEEecHHH
Q 021116 154 LRPGRWLDLYSGTGSVGIEAIS-----RGCSEVHFVEMDPWVVSNVLIPNLEWTG--FLDVSSIHTVRVET 217 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas-----~Ga~~V~aVDin~~al~~~ar~N~~~~g--l~~~v~ii~gD~~~ 217 (317)
.+...|+|+|||-|.++..++. ...-+|++||.++..+ +.+.+..+..+ +.++.++..++..+
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~~~ 93 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLV-ESAQKRAQKLGSDLEKRLSFIQGDIAD 93 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHH-HHHHHHHHHhcchhhccchhhccchhh
Confidence 3578999999999999998766 4345799999999998 89988888877 54556666666554
|
|
| >PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00015 Score=67.16 Aligned_cols=79 Identities=22% Similarity=0.303 Sum_probs=50.8
Q ss_pred CeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHh--CC------CCceEEEEecHHHHHHHHhhhcCC
Q 021116 157 GRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWT--GF------LDVSSIHTVRVETFLERAEQFVGK 228 (317)
Q Consensus 157 ~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~--gl------~~~v~ii~gD~~~~l~~~~~~~~~ 228 (317)
.+|||.=||-|.=++.++..|+ +|+++|.||... .+.+.-+++. +- ..+++++++|..+++.. .
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~G~-~V~~lErspvia-~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~------~ 148 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASLGC-KVTGLERSPVIA-ALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQ------P 148 (234)
T ss_dssp --EEETT-TTSHHHHHHHHHT---EEEEE--HHHH-HHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCC------H
T ss_pred CEEEECCCcchHHHHHHHccCC-eEEEEECCHHHH-HHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhh------c
Confidence 4899999999999998888887 699999999886 7777655443 11 13789999999988752 2
Q ss_pred CCCccEEEECCCCCC
Q 021116 229 DGPFDYMSVTPPYTA 243 (317)
Q Consensus 229 ~~~fDlV~~dPPy~~ 243 (317)
..+||+|.+||.|..
T Consensus 149 ~~s~DVVY~DPMFp~ 163 (234)
T PF04445_consen 149 DNSFDVVYFDPMFPE 163 (234)
T ss_dssp SS--SEEEE--S---
T ss_pred CCCCCEEEECCCCCC
Confidence 478999999999864
|
; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A. |
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00071 Score=63.41 Aligned_cols=93 Identities=20% Similarity=0.232 Sum_probs=61.3
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccE
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDl 234 (317)
...++||+|||-|.++..++.. .++|++-|.++.|. ..++ .-|+ +++ |..+|.+ .+.+||+
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~-f~~v~aTE~S~~Mr-~rL~----~kg~----~vl--~~~~w~~-------~~~~fDv 154 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPL-FKEVYATEASPPMR-WRLS----KKGF----TVL--DIDDWQQ-------TDFKFDV 154 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhh-cceEEeecCCHHHH-HHHH----hCCC----eEE--ehhhhhc-------cCCceEE
Confidence 5678999999999999877554 56799999999996 4332 3343 233 3333432 2368999
Q ss_pred EEE-CCCCCCccHHHHHHHHHHcCCcCCCeEEEEE
Q 021116 235 MSV-TPPYTAVDYEVLMAQISKSALVGKDSFIVVE 268 (317)
Q Consensus 235 V~~-dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~ 268 (317)
|.+ |-==....-..+++.+.. .|+|+|++++.
T Consensus 155 IscLNvLDRc~~P~~LL~~i~~--~l~p~G~lilA 187 (265)
T PF05219_consen 155 ISCLNVLDRCDRPLTLLRDIRR--ALKPNGRLILA 187 (265)
T ss_pred EeehhhhhccCCHHHHHHHHHH--HhCCCCEEEEE
Confidence 986 210011123456666653 68999998865
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0024 Score=61.41 Aligned_cols=91 Identities=14% Similarity=0.131 Sum_probs=68.9
Q ss_pred HHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecH
Q 021116 137 KGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRV 215 (317)
Q Consensus 137 ~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~-Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~ 215 (317)
.+.+.+.|.. .++..++|.=+|-|.-+..++.. +..+|+++|.|+.++ +.++++++.+ .+++++++++.
T Consensus 9 l~Evl~~L~~-------~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al-~~ak~~L~~~--~~R~~~i~~nF 78 (305)
T TIGR00006 9 LDEVVEGLNI-------KPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAI-AFAKERLSDF--EGRVVLIHDNF 78 (305)
T ss_pred HHHHHHhcCc-------CCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHH-HHHHHHHhhc--CCcEEEEeCCH
Confidence 3444455543 35789999999999999988765 336899999999999 9999988754 46799999998
Q ss_pred HHHHHHHhhhcCCCCCccEEEECC
Q 021116 216 ETFLERAEQFVGKDGPFDYMSVTP 239 (317)
Q Consensus 216 ~~~l~~~~~~~~~~~~fDlV~~dP 239 (317)
.++...+..+ ...++|.|++|-
T Consensus 79 ~~l~~~l~~~--~~~~vDgIl~DL 100 (305)
T TIGR00006 79 ANFFEHLDEL--LVTKIDGILVDL 100 (305)
T ss_pred HHHHHHHHhc--CCCcccEEEEec
Confidence 8876554321 124699999974
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >KOG4058 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0019 Score=56.11 Aligned_cols=87 Identities=21% Similarity=0.277 Sum_probs=65.5
Q ss_pred EEecCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhH
Q 021116 120 KLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNL 199 (317)
Q Consensus 120 ~l~~p~~~~~rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~ 199 (317)
++.+|. -|.+.+-.+.+.+.+.. .+..+.+|+|+|-|.+-+.+++-|....+++|.||+.+ ..+|-.+
T Consensus 48 R~cvPY----VpAtteQv~nVLSll~~-------n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLV-aysrl~a 115 (199)
T KOG4058|consen 48 RLCVPY----VPATTEQVENVLSLLRG-------NPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLV-AYSRLHA 115 (199)
T ss_pred eecccc----cCccHHHHHHHHHHccC-------CCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHH-HHHHHHH
Confidence 455553 34333333344555543 34567999999999999988888877799999999998 9999988
Q ss_pred HHhCCCCceEEEEecHHHH
Q 021116 200 EWTGFLDVSSIHTVRVETF 218 (317)
Q Consensus 200 ~~~gl~~~v~ii~gD~~~~ 218 (317)
-+.|+...++|...|+..+
T Consensus 116 ~R~g~~k~trf~RkdlwK~ 134 (199)
T KOG4058|consen 116 WRAGCAKSTRFRRKDLWKV 134 (199)
T ss_pred HHHhcccchhhhhhhhhhc
Confidence 8889888888888887654
|
|
| >KOG1501 consensus Arginine N-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00042 Score=69.04 Aligned_cols=57 Identities=21% Similarity=0.201 Sum_probs=52.2
Q ss_pred CCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEe
Q 021116 156 PGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTV 213 (317)
Q Consensus 156 ~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~g 213 (317)
..-|||+|+|||.+++.|+..|+..|+++|.-..|. ++|++=..+||..++|++++.
T Consensus 67 kv~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~-d~arkI~~kng~SdkI~vInk 123 (636)
T KOG1501|consen 67 KVFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMV-DLARKIMHKNGMSDKINVINK 123 (636)
T ss_pred eEEEEEccCCccHHHHHHHHhcCCeEEeehhhchHH-HHHHHHHhcCCCccceeeecc
Confidence 346899999999999999999999999999999998 999999999999999988764
|
|
| >COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00068 Score=65.54 Aligned_cols=75 Identities=21% Similarity=0.264 Sum_probs=58.6
Q ss_pred CCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCC-CccE
Q 021116 156 PGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDG-PFDY 234 (317)
Q Consensus 156 ~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~-~fDl 234 (317)
.-+++|||||.|.+.+-+...|..-+.++|+|+.++ +.-+.|... ..++..|+.++..... .. .+|+
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~-~ty~~n~~~------~~~~~~di~~~~~~~~-----~~~~~Dv 70 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAV-ATYKANFPH------GDIILGDIKELDGEAL-----RKSDVDV 70 (328)
T ss_pred CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHH-HHHHHhCCC------CceeechHhhcChhhc-----cccCCCE
Confidence 357999999999999877777887899999999998 888877653 3467788876653321 12 7899
Q ss_pred EEECCCCC
Q 021116 235 MSVTPPYT 242 (317)
Q Consensus 235 V~~dPPy~ 242 (317)
++..||..
T Consensus 71 ligGpPCQ 78 (328)
T COG0270 71 LIGGPPCQ 78 (328)
T ss_pred EEeCCCCc
Confidence 99999975
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00037 Score=66.44 Aligned_cols=106 Identities=15% Similarity=0.164 Sum_probs=66.9
Q ss_pred CCeEEEECCCcc----hHHHHHHHcC-----CCEEEEEeCCHHHHHHHHHHhHHH---------------h--------C
Q 021116 156 PGRWLDLYSGTG----SVGIEAISRG-----CSEVHFVEMDPWVVSNVLIPNLEW---------------T--------G 203 (317)
Q Consensus 156 ~~rVLDlgcGtG----~l~Ieaas~G-----a~~V~aVDin~~al~~~ar~N~~~---------------~--------g 203 (317)
.-+|+..||.|| ++++.+...+ .-+|+|.|+|+.++ +.|++..-. + |
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL-~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~ 194 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVL-EKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG 194 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHH-HHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence 469999999999 5555443321 13699999999999 999876210 0 0
Q ss_pred -------CCCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCC--CC-CccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 204 -------FLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPP--YT-AVDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 204 -------l~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPP--y~-~~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
+.+.|+|.+.|+.+.. . ...+.||+|++--- |. ......+++.+. +.|+|||++++.+.
T Consensus 195 ~~~v~~~lr~~V~F~~~NL~~~~--~----~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~--~~L~pgG~L~lG~s 263 (287)
T PRK10611 195 LVRVRQELANYVDFQQLNLLAKQ--W----AVPGPFDAIFCRNVMIYFDKTTQERILRRFV--PLLKPDGLLFAGHS 263 (287)
T ss_pred eEEEChHHHccCEEEcccCCCCC--C----ccCCCcceeeHhhHHhcCCHHHHHHHHHHHH--HHhCCCcEEEEeCc
Confidence 1234556666654310 0 01367999998321 21 113455666665 47999999999875
|
|
| >TIGR00675 dcm DNA-methyltransferase (dcm) | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00055 Score=65.87 Aligned_cols=70 Identities=17% Similarity=0.269 Sum_probs=54.4
Q ss_pred EEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEEC
Q 021116 159 WLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVT 238 (317)
Q Consensus 159 VLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~d 238 (317)
|+|||||.|.+.+-+-..|..-+.++|+++.++ +..+.|.. + .++.+|+.++.... -+.+|+++..
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~-~ty~~N~~-----~--~~~~~Di~~~~~~~------~~~~dvl~gg 66 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQ-KTYEANFG-----N--KVPFGDITKISPSD------IPDFDILLGG 66 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHH-HHHHHhCC-----C--CCCccChhhhhhhh------CCCcCEEEec
Confidence 689999999999877778887788999999998 88888853 2 34568888764221 2468999999
Q ss_pred CCCC
Q 021116 239 PPYT 242 (317)
Q Consensus 239 PPy~ 242 (317)
||..
T Consensus 67 ~PCq 70 (315)
T TIGR00675 67 FPCQ 70 (315)
T ss_pred CCCc
Confidence 9964
|
All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0012 Score=62.47 Aligned_cols=45 Identities=18% Similarity=0.197 Sum_probs=40.0
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHH
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLE 200 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~ 200 (317)
.+|+.|||.|||||+.++.|...|- +.+|+|++++.+ +.|++-++
T Consensus 207 ~~GD~VLDPF~GSGTT~~AA~~lgR-~~IG~Ei~~~Y~-~~a~~Rl~ 251 (284)
T PRK11524 207 NPGDIVLDPFAGSFTTGAVAKASGR-KFIGIEINSEYI-KMGLRRLD 251 (284)
T ss_pred CCCCEEEECCCCCcHHHHHHHHcCC-CEEEEeCCHHHH-HHHHHHHH
Confidence 4789999999999999998888774 699999999998 99988775
|
|
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0013 Score=60.25 Aligned_cols=76 Identities=16% Similarity=0.123 Sum_probs=65.6
Q ss_pred CCCeEEEECCCcchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
.+.++.|+||=-|.+++.+...+ +.+++++|+++..+ +.|.+|++.+++.+++++..+|....+.. +..+|
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl-~~a~~~v~~~~l~~~i~vr~~dgl~~l~~-------~d~~d 87 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPL-ESAIRNVKKNNLSERIDVRLGDGLAVLEL-------EDEID 87 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHH-HHHHHHHHhcCCcceEEEeccCCccccCc-------cCCcC
Confidence 46679999999999999998876 57899999999999 99999999999999999999998665532 34789
Q ss_pred EEEEC
Q 021116 234 YMSVT 238 (317)
Q Consensus 234 lV~~d 238 (317)
+|++-
T Consensus 88 ~ivIA 92 (226)
T COG2384 88 VIVIA 92 (226)
T ss_pred EEEEe
Confidence 88875
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.00067 Score=64.19 Aligned_cols=59 Identities=14% Similarity=0.168 Sum_probs=41.4
Q ss_pred eEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCc-c------------HHHHHHHH-H-HcCCcCCCeEEEEEeCC
Q 021116 208 SSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAV-D------------YEVLMAQI-S-KSALVGKDSFIVVEYPL 271 (317)
Q Consensus 208 v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~-~------------~~~~l~~L-~-~~~lLkpgG~ivv~~~~ 271 (317)
.+++++|+.+++..+ .+++||+||+||||..+ . +.+.+..+ . ..++|++||.+++.+..
T Consensus 9 ~~i~~gD~~~~l~~l-----~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~~ 82 (284)
T PRK11524 9 KTIIHGDALTELKKI-----PSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNST 82 (284)
T ss_pred CEEEeccHHHHHHhc-----ccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcCc
Confidence 578999999988654 25789999999999631 0 22222211 1 24799999999997664
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0032 Score=57.95 Aligned_cols=47 Identities=19% Similarity=0.128 Sum_probs=40.7
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHh
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWT 202 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~ 202 (317)
.+++.|||+|||||+.+++|...|- +.+++|++++.+ +.+.+.++..
T Consensus 162 ~~g~~vlDpf~Gsgtt~~aa~~~~r-~~~g~e~~~~y~-~~~~~r~~~~ 208 (227)
T PRK13699 162 HPNAIVLDPFAGSGSTCVAALQSGR-RYIGIELLEQYH-RAGQQRLAAV 208 (227)
T ss_pred CCCCEEEeCCCCCCHHHHHHHHcCC-CEEEEecCHHHH-HHHHHHHHHH
Confidence 3688999999999999998887775 699999999998 9998877654
|
|
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0019 Score=55.29 Aligned_cols=89 Identities=16% Similarity=0.119 Sum_probs=57.5
Q ss_pred EEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCc-------cHHHHHHH
Q 021116 180 EVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAV-------DYEVLMAQ 252 (317)
Q Consensus 180 ~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~-------~~~~~l~~ 252 (317)
+|++.|+.++|+ +.+++.++..++.++++++...=.++..... .+++|+++.|-=|-.+ ..+..+..
T Consensus 1 kVyaFDIQ~~Ai-~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~-----~~~v~~~iFNLGYLPggDk~i~T~~~TTl~A 74 (140)
T PF06962_consen 1 KVYAFDIQEEAI-ENTRERLEEAGLEDRVTLILDSHENLDEYIP-----EGPVDAAIFNLGYLPGGDKSITTKPETTLKA 74 (140)
T ss_dssp EEEEEES-HHHH-HHHHHHHHHTT-GSGEEEEES-GGGGGGT-------S--EEEEEEEESB-CTS-TTSB--HHHHHHH
T ss_pred CEEEEECHHHHH-HHHHHHHHhcCCCCcEEEEECCHHHHHhhCc-----cCCcCEEEEECCcCCCCCCCCCcCcHHHHHH
Confidence 699999999999 9999999999998899999866444432221 2479999998655432 13444444
Q ss_pred HHH-cCCcCCCeEEEEEeCCCCC
Q 021116 253 ISK-SALVGKDSFIVVEYPLRTD 274 (317)
Q Consensus 253 L~~-~~lLkpgG~ivv~~~~~~~ 274 (317)
+.+ ..+|++||++.+..-..+.
T Consensus 75 l~~al~lL~~gG~i~iv~Y~GH~ 97 (140)
T PF06962_consen 75 LEAALELLKPGGIITIVVYPGHP 97 (140)
T ss_dssp HHHHHHHEEEEEEEEEEE--STC
T ss_pred HHHHHHhhccCCEEEEEEeCCCC
Confidence 432 2589999998876554443
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0032 Score=57.21 Aligned_cols=134 Identities=16% Similarity=0.074 Sum_probs=80.1
Q ss_pred CChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceE
Q 021116 131 PMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSS 209 (317)
Q Consensus 131 pt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~-Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ 209 (317)
|..++-++.+++.|..... ..+.+||+++||||--++..++. ..-+-.--|.++... .-.+..++..++.|-..
T Consensus 5 pAaeRNk~pIl~vL~~~l~----~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~-~sI~a~~~~~~~~Nv~~ 79 (204)
T PF06080_consen 5 PAAERNKDPILEVLKQYLP----DSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLR-PSIRAWIAEAGLPNVRP 79 (204)
T ss_pred hhhhhCHhHHHHHHHHHhC----ccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHH-hhHHHHHHhcCCcccCC
Confidence 4456666666666655310 12336999999999999887653 333566679999887 77888888887765334
Q ss_pred EEEecHHHHH-HHHhhhcCCCCCccEEEECCCCCCcc---HHHHHHHHHHcCCcCCCeEEEEEeCC
Q 021116 210 IHTVRVETFL-ERAEQFVGKDGPFDYMSVTPPYTAVD---YEVLMAQISKSALVGKDSFIVVEYPL 271 (317)
Q Consensus 210 ii~gD~~~~l-~~~~~~~~~~~~fDlV~~dPPy~~~~---~~~~l~~L~~~~lLkpgG~ivv~~~~ 271 (317)
-+.-|+.+-. ......+.....||.||+--..+-.. .+.++... .++|++||.+++.-+-
T Consensus 80 P~~lDv~~~~w~~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a--~~~L~~gG~L~~YGPF 143 (204)
T PF06080_consen 80 PLALDVSAPPWPWELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGA--ARLLKPGGLLFLYGPF 143 (204)
T ss_pred CeEeecCCCCCccccccccCCCCcceeeehhHHHhcCHHHHHHHHHHH--HHhCCCCCEEEEeCCc
Confidence 4555654321 00000001235799999632122111 23333333 3689999999987553
|
The function of this family is unknown. |
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.032 Score=54.07 Aligned_cols=115 Identities=8% Similarity=-0.066 Sum_probs=70.2
Q ss_pred CCCeEEEECCCcchHHHH---HHH-cC-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEE--EEecHHHHHHHHhhhcC
Q 021116 155 RPGRWLDLYSGTGSVGIE---AIS-RG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSI--HTVRVETFLERAEQFVG 227 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ie---aas-~G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~i--i~gD~~~~l~~~~~~~~ 227 (317)
++..++|+|||+|.-.-. ++. .+ ..+.++||++..++ +.+..++..-.+. .+++ +.+|..+.+..+.+ +.
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L-~~a~~~L~~~~~p-~l~v~~l~gdy~~~l~~l~~-~~ 152 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSEL-QRTLAELPLGNFS-HVRCAGLLGTYDDGLAWLKR-PE 152 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHH-HHHHHhhhhccCC-CeEEEEEEecHHHHHhhccc-cc
Confidence 566899999999976432 332 22 24689999999999 8998888733333 2444 88998877654321 00
Q ss_pred CCCCccEEEE-CCCCCCccHHHHHHHHHH-cC-CcCCCeEEEEEeCCC
Q 021116 228 KDGPFDYMSV-TPPYTAVDYEVLMAQISK-SA-LVGKDSFIVVEYPLR 272 (317)
Q Consensus 228 ~~~~fDlV~~-dPPy~~~~~~~~l~~L~~-~~-lLkpgG~ivv~~~~~ 272 (317)
......+++. .--.+....++....|.. .+ .|.||+.+++.....
T Consensus 153 ~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D~~ 200 (319)
T TIGR03439 153 NRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLDGC 200 (319)
T ss_pred ccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecCCC
Confidence 1123455553 322222233444554443 24 689999999876544
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0023 Score=59.70 Aligned_cols=105 Identities=16% Similarity=0.251 Sum_probs=61.0
Q ss_pred EEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEECC
Q 021116 160 LDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTP 239 (317)
Q Consensus 160 LDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dP 239 (317)
|..+.||=.++..+++. ..+.+++|+.+... +..++|++. ..++++++.|.++.+..+. | ..++=-+|++||
T Consensus 62 l~~YPGSP~ia~~llR~-qDrl~l~ELHp~d~-~~L~~~~~~---~~~v~v~~~DG~~~l~all--P-P~~rRglVLIDP 133 (245)
T PF04378_consen 62 LRFYPGSPAIAARLLRE-QDRLVLFELHPQDF-EALKKNFRR---DRRVRVHHRDGYEGLKALL--P-PPERRGLVLIDP 133 (245)
T ss_dssp --EEE-HHHHHHHHS-T-TSEEEEE--SHHHH-HHHTTS--T---TS-EEEE-S-HHHHHHHH---S--TTS-EEEEE--
T ss_pred cCcCCCCHHHHHHhCCc-cceEEEEecCchHH-HHHHHHhcc---CCccEEEeCchhhhhhhhC--C-CCCCCeEEEECC
Confidence 77888887777766554 57899999999998 999888764 2479999999998876652 1 223345999999
Q ss_pred CCCC-ccHHHHHHHHHHcCCcCCCeEEEEEeCCC
Q 021116 240 PYTA-VDYEVLMAQISKSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 240 Py~~-~~~~~~l~~L~~~~lLkpgG~ivv~~~~~ 272 (317)
||.. .+|+.+.+.+.+...==+.|++.+-++..
T Consensus 134 pYE~~~dy~~v~~~l~~a~kR~~~G~~~iWYPi~ 167 (245)
T PF04378_consen 134 PYEQKDDYQRVVDALAKALKRWPTGVYAIWYPIK 167 (245)
T ss_dssp ---STTHHHHHHHHHHHHHHH-TTSEEEEEEEES
T ss_pred CCCCchHHHHHHHHHHHHHHhcCCcEEEEEeecc
Confidence 9964 47877777765321123567777777643
|
; PDB: 2OO3_A. |
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0018 Score=59.94 Aligned_cols=107 Identities=12% Similarity=0.042 Sum_probs=74.7
Q ss_pred CCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEE
Q 021116 156 PGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYM 235 (317)
Q Consensus 156 ~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV 235 (317)
...++|+|||.|.+.-.+..+|..+++.+|.+-.++ +.++. .+.+++. +....+|= +++ +....++|+|
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~-~s~~~-~qdp~i~--~~~~v~DE-E~L------df~ens~DLi 141 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMI-KSCRD-AQDPSIE--TSYFVGDE-EFL------DFKENSVDLI 141 (325)
T ss_pred CcceeecccchhhhhHHHHhcchhheeeeecchHHH-HHhhc-cCCCceE--EEEEecch-hcc------cccccchhhh
Confidence 568999999999999888888988999999999998 77754 3335543 44555663 333 3356889999
Q ss_pred EECCCCCC-ccHHHHHHHHHHcCCcCCCeEEEEEeCCCCCc
Q 021116 236 SVTPPYTA-VDYEVLMAQISKSALVGKDSFIVVEYPLRTDM 275 (317)
Q Consensus 236 ~~dPPy~~-~~~~~~l~~L~~~~lLkpgG~ivv~~~~~~~l 275 (317)
+...-.++ ++++..+-.+. ..|||+|.++.+.-...++
T Consensus 142 isSlslHW~NdLPg~m~~ck--~~lKPDg~FiasmlggdTL 180 (325)
T KOG2940|consen 142 ISSLSLHWTNDLPGSMIQCK--LALKPDGLFIASMLGGDTL 180 (325)
T ss_pred hhhhhhhhhccCchHHHHHH--HhcCCCccchhHHhccccH
Confidence 98654443 23444444443 3689999988765544444
|
|
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.025 Score=43.70 Aligned_cols=104 Identities=17% Similarity=0.149 Sum_probs=62.3
Q ss_pred EEEECCCcchHHHHHHHcCC--CEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHH-HHHHhhhcCCC-CCccE
Q 021116 159 WLDLYSGTGSVGIEAISRGC--SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF-LERAEQFVGKD-GPFDY 234 (317)
Q Consensus 159 VLDlgcGtG~l~Ieaas~Ga--~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~-l~~~~~~~~~~-~~fDl 234 (317)
++|+|||+|... .+..... ..++++|.++.++ +.++.+....+. ..+.+..+|.... + +... ..||+
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~------~~~~~~~~d~ 122 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEML-ALARARAEGAGL-GLVDFVVADALGGVL------PFEDSASFDL 122 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHH-HHHHhhhhhcCC-CceEEEEeccccCCC------CCCCCCceeE
Confidence 999999999975 2222221 3689999999998 664444322211 1156777776542 1 1122 37999
Q ss_pred EEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCCCC
Q 021116 235 MSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRT 273 (317)
Q Consensus 235 V~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~~ 273 (317)
+..............+..+. +.++++|.+++......
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~--~~l~~~g~~~~~~~~~~ 159 (257)
T COG0500 123 VISLLVLHLLPPAKALRELL--RVLKPGGRLVLSDLLRD 159 (257)
T ss_pred EeeeeehhcCCHHHHHHHHH--HhcCCCcEEEEEeccCC
Confidence 95544332222344555544 47899999888776543
|
|
| >PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.025 Score=51.70 Aligned_cols=106 Identities=15% Similarity=0.167 Sum_probs=73.6
Q ss_pred CCCCeEEEECCCcc----hHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEec-HHHHHHHHhhhcC
Q 021116 154 LRPGRWLDLYSGTG----SVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVR-VETFLERAEQFVG 227 (317)
Q Consensus 154 ~~~~rVLDlgcGtG----~l~Ieaas~-Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD-~~~~l~~~~~~~~ 227 (317)
..-+.+++.+|+-| ++++.++++ -..++++|-.+++.+ ...++.+...++.+.++|+.+| ..+.+..+
T Consensus 40 ~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~-~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~~----- 113 (218)
T PF07279_consen 40 WNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSL-SEYKKALGEAGLSDVVEFVVGEAPEEVMPGL----- 113 (218)
T ss_pred ccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhH-HHHHHHHhhccccccceEEecCCHHHHHhhc-----
Confidence 34578899966543 455554443 345799999999887 7778888878888778998888 55666554
Q ss_pred CCCCccEEEECCCCCCccHH-HHHHHHHHcCCcCCCeEEEEEeCCCC
Q 021116 228 KDGPFDYMSVTPPYTAVDYE-VLMAQISKSALVGKDSFIVVEYPLRT 273 (317)
Q Consensus 228 ~~~~fDlV~~dPPy~~~~~~-~~l~~L~~~~lLkpgG~ivv~~~~~~ 273 (317)
...|++++|- ...++. ++++.+ -+.+.|-+++..+...
T Consensus 114 --~~iDF~vVDc--~~~d~~~~vl~~~----~~~~~GaVVV~~Na~~ 152 (218)
T PF07279_consen 114 --KGIDFVVVDC--KREDFAARVLRAA----KLSPRGAVVVCYNAFS 152 (218)
T ss_pred --cCCCEEEEeC--CchhHHHHHHHHh----ccCCCceEEEEecccc
Confidence 5789999994 333555 666654 3677777777776543
|
The function of this family is unknown. |
| >PRK10458 DNA cytosine methylase; Provisional | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.003 Score=64.10 Aligned_cols=83 Identities=17% Similarity=0.148 Sum_probs=55.6
Q ss_pred CCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHH----------Hhhh
Q 021116 156 PGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER----------AEQF 225 (317)
Q Consensus 156 ~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~----------~~~~ 225 (317)
.-+++|||||.|.+.+-+-..|..-|.++|+|+.|+ +.-+.|.... ....++.+|+.++... ...+
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~-~TY~~N~~~~---p~~~~~~~DI~~i~~~~~~~~~~~~~~~~~ 163 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAV-RTYKANWYCD---PATHRFNEDIRDITLSHKEGVSDEEAAEHI 163 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHH-HHHHHHcCCC---CccceeccChhhCccccccccchhhhhhhh
Confidence 458999999999999877667887789999999998 8888885211 1123445666554210 0000
Q ss_pred cCCCCCccEEEECCCCC
Q 021116 226 VGKDGPFDYMSVTPPYT 242 (317)
Q Consensus 226 ~~~~~~fDlV~~dPPy~ 242 (317)
...-+.+|+++..||..
T Consensus 164 ~~~~p~~DvL~gGpPCQ 180 (467)
T PRK10458 164 RQHIPDHDVLLAGFPCQ 180 (467)
T ss_pred hccCCCCCEEEEcCCCC
Confidence 00123689999999974
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.002 Score=59.32 Aligned_cols=59 Identities=19% Similarity=0.282 Sum_probs=41.5
Q ss_pred eEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCc------------cHHHHHHH-HH-HcCCcCCCeEEEEEeCC
Q 021116 208 SSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAV------------DYEVLMAQ-IS-KSALVGKDSFIVVEYPL 271 (317)
Q Consensus 208 v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~------------~~~~~l~~-L~-~~~lLkpgG~ivv~~~~ 271 (317)
++++++|+.+.+..+ +++++|+||.||||..+ .+.+.+.. +. ..|+|+|||.+++.+..
T Consensus 2 ~~l~~gD~le~l~~l-----pd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~~ 74 (227)
T PRK13699 2 SRFILGNCIDVMARF-----PDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYGW 74 (227)
T ss_pred CeEEechHHHHHHhC-----CccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEecc
Confidence 368899999998776 46899999999999621 12222222 22 24799999999886554
|
|
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0069 Score=56.62 Aligned_cols=111 Identities=27% Similarity=0.261 Sum_probs=68.4
Q ss_pred CCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhC-----CCCceEEEEecHHHHHHHHhhhcCCCC
Q 021116 156 PGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTG-----FLDVSSIHTVRVETFLERAEQFVGKDG 230 (317)
Q Consensus 156 ~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~g-----l~~~v~ii~gD~~~~l~~~~~~~~~~~ 230 (317)
..+||++|+|||..|+.++......|+.-|.-.. + +..+.|...++ +...+.+..-+..+.+... ...+
T Consensus 87 ~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~-~-~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~----~~~~ 160 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALLLGAEVVLTDLPKV-V-ENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVS----FRLP 160 (248)
T ss_pred ceeEEEecCCccHHHHHHHHHhcceeccCCchhh-H-HHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHh----hccC
Confidence 4579999999999999877755456776666543 3 45566644443 2222333222222111100 0123
Q ss_pred C-ccEEEE-CCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCCCCC
Q 021116 231 P-FDYMSV-TPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTD 274 (317)
Q Consensus 231 ~-fDlV~~-dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~~~ 274 (317)
. ||+|++ |.-|....++.++..+.. +|..++++++.+..+..
T Consensus 161 ~~~DlilasDvvy~~~~~e~Lv~tla~--ll~~~~~i~l~~~lr~~ 204 (248)
T KOG2793|consen 161 NPFDLILASDVVYEEESFEGLVKTLAF--LLAKDGTIFLAYPLRRD 204 (248)
T ss_pred CcccEEEEeeeeecCCcchhHHHHHHH--HHhcCCeEEEEEecccc
Confidence 4 899995 777877777777777653 67777788888887764
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.01 Score=56.41 Aligned_cols=105 Identities=18% Similarity=0.150 Sum_probs=61.5
Q ss_pred CCeEEEECCCcchHHHH-HHHc-C-CCEEEEEeCCHHHHHHHHHHhHH-HhCCCCceEEEEecHHHHHHHHhhhcCCCCC
Q 021116 156 PGRWLDLYSGTGSVGIE-AISR-G-CSEVHFVEMDPWVVSNVLIPNLE-WTGFLDVSSIHTVRVETFLERAEQFVGKDGP 231 (317)
Q Consensus 156 ~~rVLDlgcGtG~l~Ie-aas~-G-a~~V~aVDin~~al~~~ar~N~~-~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~ 231 (317)
..+|+=+|||.=-++.- +++. + ...|+++|+|++|+ +.+++=++ ..|+.++++|+.+|+.+....+ ..
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~-~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl-------~~ 192 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEAN-ELARRLVASDLGLSKRMSFITADVLDVTYDL-------KE 192 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHH-HHHHHHHH---HH-SSEEEEES-GGGG-GG----------
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHH-HHHHHHHhhcccccCCeEEEecchhcccccc-------cc
Confidence 35999998776555433 3332 3 24699999999998 99988666 6677888999999987653222 57
Q ss_pred ccEEEECCCCC--CccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 232 FDYMSVTPPYT--AVDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 232 fDlV~~dPPy~--~~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
||+|++-.-=+ ...-.++++.+.. .+++|+.+++-..
T Consensus 193 ~DvV~lAalVg~~~e~K~~Il~~l~~--~m~~ga~l~~Rsa 231 (276)
T PF03059_consen 193 YDVVFLAALVGMDAEPKEEILEHLAK--HMAPGARLVVRSA 231 (276)
T ss_dssp -SEEEE-TT-S----SHHHHHHHHHH--HS-TTSEEEEEE-
T ss_pred CCEEEEhhhcccccchHHHHHHHHHh--hCCCCcEEEEecc
Confidence 99999864111 1256778888864 6899999988754
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0054 Score=60.03 Aligned_cols=114 Identities=14% Similarity=0.103 Sum_probs=71.5
Q ss_pred CCCCeEEEECCCcchHHHHHHH---cCC--CEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHH--hhhc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAIS---RGC--SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA--EQFV 226 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas---~Ga--~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~--~~~~ 226 (317)
.++.+|||+||-.|+-++.++. ... ..|++-|.++..+ ...+.-+....-. .+.+.+.|+..+.... ...+
T Consensus 154 ~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~-~~L~~q~~~l~~~-~~~v~~~~~~~~p~~~~~~~~~ 231 (375)
T KOG2198|consen 154 KPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRL-NMLVHQLKRLPSP-NLLVTNHDASLFPNIYLKDGND 231 (375)
T ss_pred CCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHH-HHHHHHHhccCCc-ceeeecccceeccccccccCch
Confidence 4689999999999988865443 332 2699999999998 7777766555432 3555555554432211 0001
Q ss_pred CCCCCccEEEECCCCCCc-c--------------------HHHHHHHHH-HcCCcCCCeEEEEEe
Q 021116 227 GKDGPFDYMSVTPPYTAV-D--------------------YEVLMAQIS-KSALVGKDSFIVVEY 269 (317)
Q Consensus 227 ~~~~~fDlV~~dPPy~~~-~--------------------~~~~l~~L~-~~~lLkpgG~ivv~~ 269 (317)
.....||-|++|-|.... . ..-++..+. ..++|++||.+|-++
T Consensus 232 ~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYST 296 (375)
T KOG2198|consen 232 KEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYST 296 (375)
T ss_pred hhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEec
Confidence 123579999999998632 0 011223333 247899999987553
|
|
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.012 Score=53.46 Aligned_cols=108 Identities=15% Similarity=0.035 Sum_probs=65.7
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCC--CEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHH--HHHHhhhcCCC
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGC--SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF--LERAEQFVGKD 229 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga--~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~--l~~~~~~~~~~ 229 (317)
.++.+|+||||-.|+.+-.+++... ..|++||+.|-.. .. + +.++++|+.+- +..+.. ....
T Consensus 44 ~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~----~~--------~-V~~iq~d~~~~~~~~~l~~-~l~~ 109 (205)
T COG0293 44 KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP----IP--------G-VIFLQGDITDEDTLEKLLE-ALGG 109 (205)
T ss_pred cCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc----CC--------C-ceEEeeeccCccHHHHHHH-HcCC
Confidence 4689999999999999988776532 2499999999654 11 1 56777776432 111110 0122
Q ss_pred CCccEEEECCCCCC-c----cHHHHH---HHH--HHcCCcCCCeEEEEEeCCCCCc
Q 021116 230 GPFDYMSVTPPYTA-V----DYEVLM---AQI--SKSALVGKDSFIVVEYPLRTDM 275 (317)
Q Consensus 230 ~~fDlV~~dPPy~~-~----~~~~~l---~~L--~~~~lLkpgG~ivv~~~~~~~l 275 (317)
..+|+|++|+--.. + +....+ ... .+...|+++|.+++-.-.....
T Consensus 110 ~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~ 165 (205)
T COG0293 110 APVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGEDF 165 (205)
T ss_pred CCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCH
Confidence 34799999974322 2 111111 111 1235899999999876655443
|
|
| >TIGR00497 hsdM type I restriction system adenine methylase (hsdM) | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0037 Score=63.87 Aligned_cols=101 Identities=16% Similarity=0.102 Sum_probs=65.5
Q ss_pred ChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHH---cC--CCEEEEEeCCHHHHHHHHHHhHHHhCCCC
Q 021116 132 MMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAIS---RG--CSEVHFVEMDPWVVSNVLIPNLEWTGFLD 206 (317)
Q Consensus 132 t~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas---~G--a~~V~aVDin~~al~~~ar~N~~~~gl~~ 206 (317)
|...+.+.+..++... .-++..+.|++||||.+-+++.. .| ...+++.|.++.+. ..++.|+...+...
T Consensus 199 Tp~~Iv~l~~~~~~~~-----~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~-~~a~mnm~l~~~~~ 272 (501)
T TIGR00497 199 TPQDISELLARIAIGK-----KDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTY-NLCRMNMILHNIDY 272 (501)
T ss_pred CcHHHHHHHHHHhccC-----CCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHH-HHHHHHHHHcCCCc
Confidence 4455565555555432 01457899999999999887543 12 24699999999998 99999987766532
Q ss_pred -ceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCC
Q 021116 207 -VSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTA 243 (317)
Q Consensus 207 -~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~ 243 (317)
...+..+|-..-.... ....||.|++||||+.
T Consensus 273 ~t~~~~~~dtl~~~d~~-----~~~~~D~v~~NpPf~~ 305 (501)
T TIGR00497 273 ANFNIINADTLTTKEWE-----NENGFEVVVSNPPYSI 305 (501)
T ss_pred cccCcccCCcCCCcccc-----ccccCCEEeecCCccc
Confidence 2333344432210000 1246999999999964
|
Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)). |
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0084 Score=56.73 Aligned_cols=46 Identities=24% Similarity=0.159 Sum_probs=37.5
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhC
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTG 203 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~g 203 (317)
....+||=+|||.|.++.|.+.+|. .|.+.|.|-.|+ .--|.-.|+
T Consensus 55 ~~~~~VLVPGsGLGRLa~Eia~~G~-~~~gnE~S~~Ml---l~s~fiLn~ 100 (270)
T PF07942_consen 55 RSKIRVLVPGSGLGRLAWEIAKLGY-AVQGNEFSYFML---LASNFILNH 100 (270)
T ss_pred CCccEEEEcCCCcchHHHHHhhccc-eEEEEEchHHHH---HHHHHHHcc
Confidence 3468999999999999999999998 599999999997 334444443
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >COG3129 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.011 Score=54.70 Aligned_cols=120 Identities=18% Similarity=0.173 Sum_probs=75.6
Q ss_pred ecce-EEecCCCCC--CCCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHH---H-cCCCEEEEEeCCH
Q 021116 116 ARRK-KLLSPKGMD--VRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAI---S-RGCSEVHFVEMDP 188 (317)
Q Consensus 116 ~~G~-~l~~p~~~~--~rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaa---s-~Ga~~V~aVDin~ 188 (317)
+.+. ....|.+.- .-|...-....+.+.|....+- .+.++.+.||+| +|+-.|.-+ . .|- +-++-|+|+
T Consensus 37 fY~v~~wdiPeg~LCPpvPgRAdYih~laDLL~s~~g~-~~~~~i~~LDIG--vGAnCIYPliG~~eYgw-rfvGseid~ 112 (292)
T COG3129 37 FYAVRYWDIPEGFLCPPVPGRADYIHHLADLLASTSGQ-IPGKNIRILDIG--VGANCIYPLIGVHEYGW-RFVGSEIDS 112 (292)
T ss_pred hcceeEecCCCCCcCCCCCChhHHHHHHHHHHHhcCCC-CCcCceEEEeec--cCcccccccccceeecc-eeecCccCH
Confidence 3344 366676652 2333333455666777653211 123567899995 555555422 1 233 588999999
Q ss_pred HHHHHHHHHhHHHh-CCCCceEEEEe-cHHHHHHHHhhhcCCCCCccEEEECCCCCC
Q 021116 189 WVVSNVLIPNLEWT-GFLDVSSIHTV-RVETFLERAEQFVGKDGPFDYMSVTPPYTA 243 (317)
Q Consensus 189 ~al~~~ar~N~~~~-gl~~~v~ii~g-D~~~~l~~~~~~~~~~~~fDlV~~dPPy~~ 243 (317)
.++ +.|+.|+..| +++..+++... |-...+... -+..+.||.+++||||+.
T Consensus 113 ~sl-~sA~~ii~~N~~l~~~I~lr~qk~~~~if~gi---ig~nE~yd~tlCNPPFh~ 165 (292)
T COG3129 113 QSL-SSAKAIISANPGLERAIRLRRQKDSDAIFNGI---IGKNERYDATLCNPPFHD 165 (292)
T ss_pred HHH-HHHHHHHHcCcchhhheeEEeccCcccccccc---ccccceeeeEecCCCcch
Confidence 999 9999999998 88777777553 333233221 234578999999999974
|
|
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.0098 Score=56.23 Aligned_cols=124 Identities=13% Similarity=0.091 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcc----hHHHHHHHcC------CCEEEEEeCCHHHHHHHHHHhHHH--
Q 021116 134 EVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG----SVGIEAISRG------CSEVHFVEMDPWVVSNVLIPNLEW-- 201 (317)
Q Consensus 134 ~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG----~l~Ieaas~G------a~~V~aVDin~~al~~~ar~N~~~-- 201 (317)
+.++..+...|.... ....-+|+-.||+|| ++++.+...+ .-+|+|.|+|..++ +.|+.-.=.
T Consensus 79 ~~l~~~v~p~l~~~~----~~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L-~~A~~G~Y~~~ 153 (268)
T COG1352 79 EELRDEVLPELVKRK----KGRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVL-EKARAGIYPSR 153 (268)
T ss_pred HHHHHHHHHHHHhhc----cCCceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHH-HHHhcCCCChh
Confidence 445555554443221 013569999999999 5666554432 23799999999999 888753211
Q ss_pred ---hCCC-----------------------CceEEEEecHHHHHHHHhhhcCCCCCccEEEEC-CC-CC-CccHHHHHHH
Q 021116 202 ---TGFL-----------------------DVSSIHTVRVETFLERAEQFVGKDGPFDYMSVT-PP-YT-AVDYEVLMAQ 252 (317)
Q Consensus 202 ---~gl~-----------------------~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~d-PP-y~-~~~~~~~l~~ 252 (317)
-++. +.|+|-+.|+.+-.. ..+.||+||+= -- |. ...-.++++.
T Consensus 154 ~~~~~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~-------~~~~fD~IfCRNVLIYFd~~~q~~il~~ 226 (268)
T COG1352 154 ELLRGLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSP-------FLGKFDLIFCRNVLIYFDEETQERILRR 226 (268)
T ss_pred HhhccCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCcc-------ccCCCCEEEEcceEEeeCHHHHHHHHHH
Confidence 1111 123333333322110 23569999983 21 11 1123555666
Q ss_pred HHHcCCcCCCeEEEEEeCC
Q 021116 253 ISKSALVGKDSFIVVEYPL 271 (317)
Q Consensus 253 L~~~~lLkpgG~ivv~~~~ 271 (317)
+. ..|+|||++++-++.
T Consensus 227 f~--~~L~~gG~LflG~sE 243 (268)
T COG1352 227 FA--DSLKPGGLLFLGHSE 243 (268)
T ss_pred HH--HHhCCCCEEEEccCc
Confidence 65 379999999998763
|
|
| >COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.052 Score=50.81 Aligned_cols=104 Identities=13% Similarity=0.174 Sum_probs=74.8
Q ss_pred EEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEECC
Q 021116 160 LDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTP 239 (317)
Q Consensus 160 LDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dP 239 (317)
|+.+|||=-++-.++ |...++.++|..|.-. ...+.|+.. +.++++.++|-+..+... +|. .+.=-+|++||
T Consensus 93 l~~YpGSP~lA~~ll-R~qDRl~l~ELHp~D~-~~L~~~f~~---d~~vrv~~~DG~~~l~a~--LPP-~erRglVLIDP 164 (279)
T COG2961 93 LRYYPGSPLLARQLL-REQDRLVLTELHPSDA-PLLRNNFAG---DRRVRVLRGDGFLALKAH--LPP-KERRGLVLIDP 164 (279)
T ss_pred cccCCCCHHHHHHHc-chhceeeeeecCccHH-HHHHHHhCC---CcceEEEecCcHHHHhhh--CCC-CCcceEEEeCC
Confidence 899999988876554 5567899999999998 899988862 356999999987766443 222 23347999999
Q ss_pred CCCC-ccHHHHHHHHHHcCCcCCCeEEEEEeCC
Q 021116 240 PYTA-VDYEVLMAQISKSALVGKDSFIVVEYPL 271 (317)
Q Consensus 240 Py~~-~~~~~~l~~L~~~~lLkpgG~ivv~~~~ 271 (317)
||.. .+|..+.+.+.+.-.=-++|+..+-++.
T Consensus 165 PfE~~~eY~rvv~~l~~~~kRf~~g~yaiWYPi 197 (279)
T COG2961 165 PFELKDEYQRVVEALAEAYKRFATGTYAIWYPI 197 (279)
T ss_pred CcccccHHHHHHHHHHHHHHhhcCceEEEEEee
Confidence 9975 4788888877642111346666666653
|
|
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.017 Score=52.60 Aligned_cols=110 Identities=14% Similarity=-0.018 Sum_probs=56.7
Q ss_pred CCCeEEEECCCcchHHHHHHH----c-CCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhc--C
Q 021116 155 RPGRWLDLYSGTGSVGIEAIS----R-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFV--G 227 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas----~-Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~--~ 227 (317)
+.+.++++|.-.|.-.+..++ . +..+|++||++.... .+.-++...+.++|++++||..+...-. +.. .
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~---~~~a~e~hp~~~rI~~i~Gds~d~~~~~-~v~~~~ 107 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPH---NRKAIESHPMSPRITFIQGDSIDPEIVD-QVRELA 107 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT-----S-GGGG----TTEEEEES-SSSTHHHH-TSGSS-
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchh---chHHHhhccccCceEEEECCCCCHHHHH-HHHHhh
Confidence 568999999999988876543 2 346899999987654 2334444555678999999876432211 110 1
Q ss_pred CCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 228 ~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
......+|+.|--.........++... +++++|++++++..
T Consensus 108 ~~~~~vlVilDs~H~~~hvl~eL~~y~--plv~~G~Y~IVeDt 148 (206)
T PF04989_consen 108 SPPHPVLVILDSSHTHEHVLAELEAYA--PLVSPGSYLIVEDT 148 (206)
T ss_dssp ---SSEEEEESS----SSHHHHHHHHH--HT--TT-EEEETSH
T ss_pred ccCCceEEEECCCccHHHHHHHHHHhC--ccCCCCCEEEEEec
Confidence 124567999996433333344444443 58999999999754
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.035 Score=51.18 Aligned_cols=127 Identities=12% Similarity=0.015 Sum_probs=71.9
Q ss_pred CCCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHH-cC-CCEEEEEeCCHHHHHHHHHHhHHHhCCCC
Q 021116 129 VRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAIS-RG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLD 206 (317)
Q Consensus 129 ~rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas-~G-a~~V~aVDin~~al~~~ar~N~~~~gl~~ 206 (317)
..|-.+.++.++++-+.... ..+|.+||-||+.+|+.--.... -| -+.|++||.+++.. +.+- +++.-. .
T Consensus 51 W~P~RSKLaAai~~Gl~~~~----ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~-rdL~-~la~~R--~ 122 (229)
T PF01269_consen 51 WNPFRSKLAAAILKGLENIP----IKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSM-RDLL-NLAKKR--P 122 (229)
T ss_dssp E-TTT-HHHHHHHTT-S--S------TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHH-HHHH-HHHHHS--T
T ss_pred cCchhhHHHHHHHcCccccC----CCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhH-HHHH-HHhccC--C
Confidence 35667788888876665321 13688999999999977655443 13 34699999999887 4443 333222 3
Q ss_pred ceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 207 VSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 207 ~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
++--+-+|+..-..... --+..|+||.|-.- ..+.+-++. .....|++||.+++...
T Consensus 123 NIiPIl~DAr~P~~Y~~----lv~~VDvI~~DVaQ-p~Qa~I~~~--Na~~fLk~gG~~~i~iK 179 (229)
T PF01269_consen 123 NIIPILEDARHPEKYRM----LVEMVDVIFQDVAQ-PDQARIAAL--NARHFLKPGGHLIISIK 179 (229)
T ss_dssp TEEEEES-TTSGGGGTT----TS--EEEEEEE-SS-TTHHHHHHH--HHHHHEEEEEEEEEEEE
T ss_pred ceeeeeccCCChHHhhc----ccccccEEEecCCC-hHHHHHHHH--HHHhhccCCcEEEEEEe
Confidence 46667788875432211 12579999999631 112221111 12247999999987753
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.019 Score=54.22 Aligned_cols=66 Identities=21% Similarity=0.194 Sum_probs=44.4
Q ss_pred CChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHH--cCCCEEEEEeCCHHHHHHHHHHhHH
Q 021116 131 PMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAIS--RGCSEVHFVEMDPWVVSNVLIPNLE 200 (317)
Q Consensus 131 pt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas--~Ga~~V~aVDin~~al~~~ar~N~~ 200 (317)
|.+......+++-+.... .+....+|||+|||+|+....+.. ....++++||.++.++ ++++.=++
T Consensus 12 p~~YA~~~~vl~El~~r~---p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~-~l~~~l~~ 79 (274)
T PF09243_consen 12 PATYAAVYRVLSELRKRL---PDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEML-ELAKRLLR 79 (274)
T ss_pred hHHHHHHHHHHHHHHHhC---cCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHH-HHHHHHHh
Confidence 334444555555554431 124678999999999987664433 2456899999999998 88876444
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >COG1568 Predicted methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.026 Score=53.59 Aligned_cols=83 Identities=14% Similarity=0.138 Sum_probs=65.1
Q ss_pred CCCCCeEEEECCCcchHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCC
Q 021116 153 SLRPGRWLDLYSGTGSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGP 231 (317)
Q Consensus 153 ~~~~~rVLDlgcGtG~l~Ieaas-~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~ 231 (317)
++.|+.|+=+| ---..+++++- .-+.+|..||+|+..+ +...+-++..|+.| ++.+.-|+.+.+..-. ..+
T Consensus 150 DL~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli-~fi~k~aee~g~~~-ie~~~~Dlr~plpe~~-----~~k 221 (354)
T COG1568 150 DLEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLI-KFIEKVAEELGYNN-IEAFVFDLRNPLPEDL-----KRK 221 (354)
T ss_pred CcCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHH-HHHHHHHHHhCccc-hhheeehhcccChHHH-----Hhh
Confidence 36788899887 44466676443 3467899999999998 99999999999954 8889899887765432 378
Q ss_pred ccEEEECCCCCC
Q 021116 232 FDYMSVTPPYTA 243 (317)
Q Consensus 232 fDlV~~dPPy~~ 243 (317)
||+.+.|||+..
T Consensus 222 FDvfiTDPpeTi 233 (354)
T COG1568 222 FDVFITDPPETI 233 (354)
T ss_pred CCeeecCchhhH
Confidence 999999999853
|
|
| >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.027 Score=54.31 Aligned_cols=91 Identities=12% Similarity=0.056 Sum_probs=62.3
Q ss_pred HHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHH
Q 021116 138 GAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVE 216 (317)
Q Consensus 138 ~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~-Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~ 216 (317)
..+.+.|.. .++..++|.=-|.|.-+.+.++. +..+|+++|.|+.++ +.++++++.+ .+++.+++++..
T Consensus 10 ~Evl~~L~~-------~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~-~~a~~~l~~~--~~r~~~~~~~F~ 79 (310)
T PF01795_consen 10 KEVLEALNP-------KPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEAL-ERAKERLKKF--DDRFIFIHGNFS 79 (310)
T ss_dssp HHHHHHHT---------TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHH-HHHHCCTCCC--CTTEEEEES-GG
T ss_pred HHHHHhhCc-------CCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHH-HHHHHHHhhc--cceEEEEeccHH
Confidence 344455654 46789999999999999888864 336899999999999 9998887754 578999998877
Q ss_pred HHHHHHhhhcCCCCCccEEEECC
Q 021116 217 TFLERAEQFVGKDGPFDYMSVTP 239 (317)
Q Consensus 217 ~~l~~~~~~~~~~~~fDlV~~dP 239 (317)
++...+... ..-..+|.|++|.
T Consensus 80 ~l~~~l~~~-~~~~~~dgiL~DL 101 (310)
T PF01795_consen 80 NLDEYLKEL-NGINKVDGILFDL 101 (310)
T ss_dssp GHHHHHHHT-TTTS-EEEEEEE-
T ss_pred HHHHHHHHc-cCCCccCEEEEcc
Confidence 665554322 1235799999974
|
The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. |
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.011 Score=52.08 Aligned_cols=113 Identities=16% Similarity=0.092 Sum_probs=69.3
Q ss_pred CCCCeEEEECCCc-chHHHHHH-HcCCCEEEEEeCCHHHHHHHHHHhHHHhCCC--CceEEEEecHHHHHHHHhhhcCCC
Q 021116 154 LRPGRWLDLYSGT-GSVGIEAI-SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFL--DVSSIHTVRVETFLERAEQFVGKD 229 (317)
Q Consensus 154 ~~~~rVLDlgcGt-G~l~Ieaa-s~Ga~~V~aVDin~~al~~~ar~N~~~~gl~--~~v~ii~gD~~~~l~~~~~~~~~~ 229 (317)
..+.+||++|.|- |..|+..+ +.....|..-|-|++++ +..++-...|-.. .++.+++.+......+. ..
T Consensus 28 ~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~sv-rnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~-----eq 101 (201)
T KOG3201|consen 28 IRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESV-RNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQ-----EQ 101 (201)
T ss_pred HhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHH-HHHHHHHhcccccccceehhhHHHHhhhHHHH-----hh
Confidence 4678999998874 44444433 34456799999999998 7776644444111 22333333333222222 23
Q ss_pred CCccEEEE-CCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCCCCC
Q 021116 230 GPFDYMSV-TPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTD 274 (317)
Q Consensus 230 ~~fDlV~~-dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~~~ 274 (317)
..||+|++ |--|.....+.+.+.+. .+|+|.|.-++..+.+-+
T Consensus 102 ~tFDiIlaADClFfdE~h~sLvdtIk--~lL~p~g~Al~fsPRRg~ 145 (201)
T KOG3201|consen 102 HTFDIILAADCLFFDEHHESLVDTIK--SLLRPSGRALLFSPRRGQ 145 (201)
T ss_pred CcccEEEeccchhHHHHHHHHHHHHH--HHhCcccceeEecCcccc
Confidence 58999996 54443333455666665 489999998888776643
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.0042 Score=56.68 Aligned_cols=117 Identities=7% Similarity=0.061 Sum_probs=60.4
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
.....|.|+|||-+.++- +...+. +|+..|.-... + .++.+|+.+. |..+++.|
T Consensus 71 ~~~~viaD~GCGdA~la~-~~~~~~-~V~SfDLva~n---------------~--~Vtacdia~v-------PL~~~svD 124 (219)
T PF05148_consen 71 PKSLVIADFGCGDAKLAK-AVPNKH-KVHSFDLVAPN---------------P--RVTACDIANV-------PLEDESVD 124 (219)
T ss_dssp -TTS-EEEES-TT-HHHH-H--S----EEEEESS-SS---------------T--TEEES-TTS--------S--TT-EE
T ss_pred CCCEEEEECCCchHHHHH-hcccCc-eEEEeeccCCC---------------C--CEEEecCccC-------cCCCCcee
Confidence 346799999999999984 334333 59998875421 1 1466777543 34568999
Q ss_pred EEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCCCC--Ccc-----ccCCCeEEEEEeecCceEEEEEe
Q 021116 234 YMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRT--DML-----DTCGCLVKIKDRRFGRTHLAIYG 299 (317)
Q Consensus 234 lV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~~--~l~-----~~~~~~~~~~~r~yG~~~l~~~~ 299 (317)
+++..-.-...++.+.+... .|+|++||.+++.+..+. .+. ...-||.......- .+.+.+|.
T Consensus 125 v~VfcLSLMGTn~~~fi~EA--~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~GF~~~~~d~~-n~~F~~f~ 194 (219)
T PF05148_consen 125 VAVFCLSLMGTNWPDFIREA--NRVLKPGGILKIAEVKSRFENVKQFIKALKKLGFKLKSKDES-NKHFVLFE 194 (219)
T ss_dssp EEEEES---SS-HHHHHHHH--HHHEEEEEEEEEEEEGGG-S-HHHHHHHHHCTTEEEEEEE---STTEEEEE
T ss_pred EEEEEhhhhCCCcHHHHHHH--HheeccCcEEEEEEecccCcCHHHHHHHHHHCCCeEEecccC-CCeEEEEE
Confidence 99987543333566655543 379999999988765331 111 01357877654332 34444443
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >KOG2912 consensus Predicted DNA methylase [Function unknown] | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.032 Score=53.94 Aligned_cols=115 Identities=19% Similarity=0.168 Sum_probs=69.2
Q ss_pred EEecCCCCC--CCCChHHHHHHHHHHHhhcCCCCCCCCCCe--EEEECCCcchHHHHHHH----cCCCEEEEEeCCHHHH
Q 021116 120 KLLSPKGMD--VRPMMEVVKGAAFDILQSAGGCPASLRPGR--WLDLYSGTGSVGIEAIS----RGCSEVHFVEMDPWVV 191 (317)
Q Consensus 120 ~l~~p~~~~--~rpt~~~v~~alf~~L~~~~~~~~~~~~~r--VLDlgcGtG~l~Ieaas----~Ga~~V~aVDin~~al 191 (317)
.+.+|.+.- +-|........+-+.|..+.+ -++.. =+|+ |||+..|+.+- .+. .-.+.|++...+
T Consensus 67 ~veiP~grLcPtVPnR~nYihwI~DLLss~q~----~k~~i~~GiDI--gtgasci~~llg~rq~n~-~f~~teidd~s~ 139 (419)
T KOG2912|consen 67 SVEIPLGRLCPTVPNRLNYIHWIEDLLSSQQS----DKSTIRRGIDI--GTGASCIYPLLGARQNNW-YFLATEIDDMSF 139 (419)
T ss_pred eEecCccccCCCCccchhhHHHHHHHhhcccC----CCcceeeeeec--cCchhhhHHhhhchhccc-eeeeeecccccc
Confidence 445555542 223333344455566655321 12222 4788 56677776542 122 478999999999
Q ss_pred HHHHHHhHHHhCCCCceEEEEecHHHH-HHHHhhhcCCCCCccEEEECCCCCC
Q 021116 192 SNVLIPNLEWTGFLDVSSIHTVRVETF-LERAEQFVGKDGPFDYMSVTPPYTA 243 (317)
Q Consensus 192 ~~~ar~N~~~~gl~~~v~ii~gD~~~~-l~~~~~~~~~~~~fDlV~~dPPy~~ 243 (317)
..|+.|+..|++.+.+.+++....+. +..... ......||++.+||||..
T Consensus 140 -~~a~snV~qn~lss~ikvV~~~~~ktll~d~~~-~~~e~~ydFcMcNPPFfe 190 (419)
T KOG2912|consen 140 -NYAKSNVEQNNLSSLIKVVKVEPQKTLLMDALK-EESEIIYDFCMCNPPFFE 190 (419)
T ss_pred -chhhccccccccccceeeEEecchhhcchhhhc-cCccceeeEEecCCchhh
Confidence 99999999999998888887643222 111100 011235999999999864
|
|
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.021 Score=52.06 Aligned_cols=108 Identities=11% Similarity=0.142 Sum_probs=71.3
Q ss_pred CCeEEEECCCcchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHhHHHhC-------CCCceEEEEecHHHHHHHHhhhcC
Q 021116 156 PGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTG-------FLDVSSIHTVRVETFLERAEQFVG 227 (317)
Q Consensus 156 ~~rVLDlgcGtG~l~Ieaas~G-a~~V~aVDin~~al~~~ar~N~~~~g-------l~~~v~ii~gD~~~~l~~~~~~~~ 227 (317)
...+.|+|||-|.+.++++-.- -.-+.+.||.-... +..++.++.++ +. ++.+++.++..++..+.
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVs-dYVk~RI~ALR~~~a~~~~~-ni~vlr~namk~lpn~f---- 134 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVS-DYVKERIQALRRTSAEGQYP-NISVLRTNAMKFLPNFF---- 134 (249)
T ss_pred cceEEeeccCccchhhhccccCccceeeeehhhHHHH-HHHHHHHHHHhccccccccc-cceeeeccchhhccchh----
Confidence 3568999999999999876543 34599999999886 99988888775 43 37788888887776543
Q ss_pred CCCCc--cEE-EECCCCCCcc-----H-HHHHHHHHHcCCcCCCeEEEEEeCC
Q 021116 228 KDGPF--DYM-SVTPPYTAVD-----Y-EVLMAQISKSALVGKDSFIVVEYPL 271 (317)
Q Consensus 228 ~~~~f--DlV-~~dPPy~~~~-----~-~~~l~~L~~~~lLkpgG~ivv~~~~ 271 (317)
..+.. +.. |-||-|.... . ..++.... -+|++||.+|..+..
T Consensus 135 ~kgqLskmff~fpdpHfk~~khk~rii~~~l~~eya--y~l~~gg~~ytitDv 185 (249)
T KOG3115|consen 135 EKGQLSKMFFLFPDPHFKARKHKWRIITSTLLSEYA--YVLREGGILYTITDV 185 (249)
T ss_pred hhcccccceeecCChhHhhhhccceeechhHHHHHH--hhhhcCceEEEEeeH
Confidence 12222 222 2366443211 1 22233222 478999999987653
|
|
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.029 Score=59.09 Aligned_cols=161 Identities=13% Similarity=-0.027 Sum_probs=92.8
Q ss_pred CCCCCCCCChHHHHHHHHHHHhhcCC---CC-CCCCCCeEEEECCCcchHHHHHHH-------cC------CCEEEEEeC
Q 021116 124 PKGMDVRPMMEVVKGAAFDILQSAGG---CP-ASLRPGRWLDLYSGTGSVGIEAIS-------RG------CSEVHFVEM 186 (317)
Q Consensus 124 p~~~~~rpt~~~v~~alf~~L~~~~~---~~-~~~~~~rVLDlgcGtG~l~Ieaas-------~G------a~~V~aVDi 186 (317)
..+..++.+..-+.|+..-.+..... .. .....-+|+|+|=|+|...+.++. .+ .-+++.+|.
T Consensus 22 ~f~d~y~s~~~~~~e~~~~f~~~~~l~~r~~~~~~~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~ 101 (662)
T PRK01747 22 QFDDVYFSNDNGLEETRYVFLGGNGLPERWAEHPRRRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEK 101 (662)
T ss_pred cCCCcccCCCCHHHHhhhhhhcCCCHHHHHhcCCCCcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEEC
Confidence 34444455555566665544332100 00 012346899999999987765441 11 137999998
Q ss_pred CHHHHHHHHHH-h-------------HHH-----hCC------CC--ceEEEEecHHHHHHHHhhhcCCCCCccEEEECC
Q 021116 187 DPWVVSNVLIP-N-------------LEW-----TGF------LD--VSSIHTVRVETFLERAEQFVGKDGPFDYMSVTP 239 (317)
Q Consensus 187 n~~al~~~ar~-N-------------~~~-----~gl------~~--~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dP 239 (317)
.|-.. +..++ + ++. .|+ .+ .++++.||+.+.+..+. ..||++|+|+
T Consensus 102 ~p~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~l~l~~gd~~~~~~~~~------~~~d~~~lD~ 174 (662)
T PRK01747 102 FPLTR-ADLARAHQHWPELAPLAEQLQAQWPLLLPGCHRLLFDDGRVTLDLWFGDANELLPQLD------ARADAWFLDG 174 (662)
T ss_pred CCCCH-HHHHHHHhhCcccHHHHHHHHHhCCccCCCceEEEecCCcEEEEEEecCHHHHHHhcc------ccccEEEeCC
Confidence 66322 11111 1 110 122 12 35678899999887652 5699999996
Q ss_pred --CCCCcc--HHHHHHHHHHcCCcCCCeEEEEEeCCCCC-ccccCCCeEEEEEeecCce
Q 021116 240 --PYTAVD--YEVLMAQISKSALVGKDSFIVVEYPLRTD-MLDTCGCLVKIKDRRFGRT 293 (317)
Q Consensus 240 --Py~~~~--~~~~l~~L~~~~lLkpgG~ivv~~~~~~~-l~~~~~~~~~~~~r~yG~~ 293 (317)
|..... -++++..|. +++++||++...+....- -.....||.+.+...||..
T Consensus 175 FsP~~np~~W~~~~~~~l~--~~~~~~~~~~t~t~a~~vr~~l~~~GF~v~~~~~~g~k 231 (662)
T PRK01747 175 FAPAKNPDMWSPNLFNALA--RLARPGATLATFTSAGFVRRGLQEAGFTVRKVKGFGRK 231 (662)
T ss_pred CCCccChhhccHHHHHHHH--HHhCCCCEEEEeehHHHHHHHHHHcCCeeeecCCCchh
Confidence 322221 267777776 488999999876543311 1112588988877778753
|
|
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.033 Score=52.06 Aligned_cols=72 Identities=15% Similarity=0.146 Sum_probs=51.0
Q ss_pred CCCeEEEECCCcchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
...+|+|+|||.--+++...... ...++|+|+|...+ +....=+...+.. .++...|...-. .....|
T Consensus 105 ~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~v-e~l~~~l~~l~~~--~~~~v~Dl~~~~--------~~~~~D 173 (251)
T PF07091_consen 105 PPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLV-EFLNAFLAVLGVP--HDARVRDLLSDP--------PKEPAD 173 (251)
T ss_dssp --SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHH-HHHHHHHHHTT-C--EEEEEE-TTTSH--------TTSEES
T ss_pred CCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHH-HHHHHHHHhhCCC--cceeEeeeeccC--------CCCCcc
Confidence 36899999999999998765432 24799999999998 9999888888875 455556754432 235689
Q ss_pred EEEE
Q 021116 234 YMSV 237 (317)
Q Consensus 234 lV~~ 237 (317)
+.++
T Consensus 174 laLl 177 (251)
T PF07091_consen 174 LALL 177 (251)
T ss_dssp EEEE
T ss_pred hhhH
Confidence 8887
|
|
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.17 Score=48.56 Aligned_cols=92 Identities=12% Similarity=0.144 Sum_probs=69.3
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcC--CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEe
Q 021116 136 VKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRG--CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTV 213 (317)
Q Consensus 136 v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~G--a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~g 213 (317)
+...+.+.|.. .++...+|.=-|-|.-+-..++.. ..+++++|.|+.++ +.|++.+..++ ++++++++
T Consensus 11 Ll~E~i~~L~~-------~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai-~~a~~~l~~~~--~r~~~v~~ 80 (314)
T COG0275 11 LLNEVVELLAP-------KPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAI-AIAKERLKEFD--GRVTLVHG 80 (314)
T ss_pred HHHHHHHhccc-------CCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHH-HHHHHHhhccC--CcEEEEeC
Confidence 34445555654 467899999999999998888764 35799999999999 99999887765 67999999
Q ss_pred cHHHHHHHHhhhcCCCCCccEEEECC
Q 021116 214 RVETFLERAEQFVGKDGPFDYMSVTP 239 (317)
Q Consensus 214 D~~~~l~~~~~~~~~~~~fDlV~~dP 239 (317)
...++...+..+ .-+.+|-|++|-
T Consensus 81 ~F~~l~~~l~~~--~i~~vDGiL~DL 104 (314)
T COG0275 81 NFANLAEALKEL--GIGKVDGILLDL 104 (314)
T ss_pred cHHHHHHHHHhc--CCCceeEEEEec
Confidence 877766554311 135789999863
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.034 Score=56.60 Aligned_cols=134 Identities=13% Similarity=0.133 Sum_probs=67.4
Q ss_pred ceEEecCCCCCCCC-ChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEE---eCCHHHHHH
Q 021116 118 RKKLLSPKGMDVRP-MMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFV---EMDPWVVSN 193 (317)
Q Consensus 118 G~~l~~p~~~~~rp-t~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aV---Din~~al~~ 193 (317)
|-++..|.|....+ ..+...+.+-+.+.... ....-..+||+|||+|++|..+++++.. +..+ |..+..+ +
T Consensus 82 gd~~~FPgggt~F~~Ga~~Yid~i~~~~~~~~---~~g~iR~~LDvGcG~aSF~a~l~~r~V~-t~s~a~~d~~~~qv-q 156 (506)
T PF03141_consen 82 GDKFRFPGGGTMFPHGADHYIDQIAEMIPLIK---WGGGIRTALDVGCGVASFGAYLLERNVT-TMSFAPNDEHEAQV-Q 156 (506)
T ss_pred CCEEEeCCCCccccCCHHHHHHHHHHHhhccc---cCCceEEEEeccceeehhHHHHhhCCce-EEEcccccCCchhh-h
Confidence 55666665543222 22333334444443210 0012247899999999999999999863 2222 2222233 3
Q ss_pred HHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEEC---CCCCCccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 194 VLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVT---PPYTAVDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 194 ~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~d---PPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
.|-+ -|+..-+.++ + ...+|..+..||+|=+. -|+...+ -+-.+.-.|+|+|||+++.+.+
T Consensus 157 fale----RGvpa~~~~~-~--------s~rLPfp~~~fDmvHcsrc~i~W~~~~---g~~l~evdRvLRpGGyfv~S~p 220 (506)
T PF03141_consen 157 FALE----RGVPAMIGVL-G--------SQRLPFPSNAFDMVHCSRCLIPWHPND---GFLLFEVDRVLRPGGYFVLSGP 220 (506)
T ss_pred hhhh----cCcchhhhhh-c--------cccccCCccchhhhhcccccccchhcc---cceeehhhhhhccCceEEecCC
Confidence 3321 2443211111 0 01245567889988542 1222111 1111111379999999999877
Q ss_pred CC
Q 021116 271 LR 272 (317)
Q Consensus 271 ~~ 272 (317)
..
T Consensus 221 pv 222 (506)
T PF03141_consen 221 PV 222 (506)
T ss_pred cc
Confidence 53
|
; GO: 0008168 methyltransferase activity |
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.058 Score=53.17 Aligned_cols=107 Identities=13% Similarity=0.047 Sum_probs=74.2
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
.++..++|++||.|....+....+...+++++.|+.-+ ..+..-....++.++..++.+|+.+ .+..+..||
T Consensus 109 ~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~-~~~~~~~~~~~l~~k~~~~~~~~~~-------~~fedn~fd 180 (364)
T KOG1269|consen 109 FPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEA-FRANELAKKAYLDNKCNFVVADFGK-------MPFEDNTFD 180 (364)
T ss_pred cccccccccCcCcCchhHHHHHhccCCccCCCcCHHHH-HHHHHHHHHHHhhhhcceehhhhhc-------CCCCccccC
Confidence 34668999999999999887765545699999999876 5555544455666666665555443 234567899
Q ss_pred EEE-ECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 234 YMS-VTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 234 lV~-~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
.+- +|---+.++....++.+. +.++|||+.++...
T Consensus 181 ~v~~ld~~~~~~~~~~~y~Ei~--rv~kpGG~~i~~e~ 216 (364)
T KOG1269|consen 181 GVRFLEVVCHAPDLEKVYAEIY--RVLKPGGLFIVKEW 216 (364)
T ss_pred cEEEEeecccCCcHHHHHHHHh--cccCCCceEEeHHH
Confidence 886 454333445666666664 67999999988754
|
|
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.11 Score=48.78 Aligned_cols=113 Identities=15% Similarity=0.083 Sum_probs=63.1
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCC---------------------------
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLD--------------------------- 206 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~--------------------------- 206 (317)
.++.++||+|||.-..-+..+..-+.+++..|..+... +.+++-++.-+.-|
T Consensus 55 ~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~-~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~ 133 (256)
T PF01234_consen 55 VKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNR-EELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR 133 (256)
T ss_dssp S-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHH-HHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhH-HHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence 46889999999996665545556678899999999998 87777665432201
Q ss_pred ce-EEEEecHHHHHHHHhhhc-C-CCCCccEEEECCC--C---CCccHHHHHHHHHHcCCcCCCeEEEEEeCCC
Q 021116 207 VS-SIHTVRVETFLERAEQFV-G-KDGPFDYMSVTPP--Y---TAVDYEVLMAQISKSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 207 ~v-~ii~gD~~~~l~~~~~~~-~-~~~~fDlV~~dPP--y---~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~ 272 (317)
.| .++.+|+.+...-. + . -.++||+|++--- . ....|...++.+. ++|+|||.+++..-..
T Consensus 134 ~Vk~Vv~cDV~~~~pl~---~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~--~lLkpGG~Lil~~~l~ 202 (256)
T PF01234_consen 134 AVKQVVPCDVTQPNPLD---PPVVLPPKFDCVISSFCLESACKDLDEYRRALRNIS--SLLKPGGHLILAGVLG 202 (256)
T ss_dssp HEEEEEE--TTSSSTTT---TS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHH--TTEEEEEEEEEEEESS
T ss_pred hhceEEEeeccCCCCCC---ccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHH--HHcCCCcEEEEEEEcC
Confidence 01 23444443221000 0 0 0124898887310 0 0013555565554 6999999999876543
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.076 Score=51.77 Aligned_cols=98 Identities=14% Similarity=-0.012 Sum_probs=67.7
Q ss_pred CCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEE
Q 021116 156 PGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYM 235 (317)
Q Consensus 156 ~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV 235 (317)
-...+|+|.|+|.+.-..++ -..+|-+++.+...+ -.++.++. .| |+.+.+|.++-. ++-|+|
T Consensus 178 v~~avDvGgGiG~v~k~ll~-~fp~ik~infdlp~v-~~~a~~~~-~g----V~~v~gdmfq~~----------P~~daI 240 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLS-KYPHIKGINFDLPFV-LAAAPYLA-PG----VEHVAGDMFQDT----------PKGDAI 240 (342)
T ss_pred CceEEEcCCcHhHHHHHHHH-hCCCCceeecCHHHH-Hhhhhhhc-CC----cceecccccccC----------CCcCeE
Confidence 37899999999999988888 456799999999988 66777765 55 455778876532 566899
Q ss_pred EECCCCCCccHHHHHHHHHH-cCCcCCCeEEEEEeC
Q 021116 236 SVTPPYTAVDYEVLMAQISK-SALVGKDSFIVVEYP 270 (317)
Q Consensus 236 ~~dPPy~~~~~~~~l~~L~~-~~lLkpgG~ivv~~~ 270 (317)
++----+...-++..+.|.. ..-|+|||.|++..+
T Consensus 241 ~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 241 WMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred EEEeecccCChHHHHHHHHHHHHhCCCCCEEEEEec
Confidence 98522111122444444431 246899988877665
|
|
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.49 Score=43.24 Aligned_cols=126 Identities=13% Similarity=0.056 Sum_probs=77.8
Q ss_pred CCCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCc
Q 021116 129 VRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDV 207 (317)
Q Consensus 129 ~rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas-~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~ 207 (317)
..|-.+.++.++.+-|.... -.++.+||=||+-+|+..-.... .|...+++||.+++...++. .-++. .++
T Consensus 54 Wnp~RSKLaAaIl~Gl~~~p----i~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl-~~a~~---R~N 125 (231)
T COG1889 54 WNPRRSKLAAAILKGLKNFP----IKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELL-DVAEK---RPN 125 (231)
T ss_pred eCcchhHHHHHHHcCcccCC----cCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHH-HHHHh---CCC
Confidence 56777888888887776421 14689999999999987655443 24446999999999873333 22222 233
Q ss_pred eEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 208 SSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 208 v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
+--+-+|+..-..... -=+..|+|+.|- ...+-.+++.. .+...|+++|.+++.-
T Consensus 126 i~PIL~DA~~P~~Y~~----~Ve~VDviy~DV--AQp~Qa~I~~~-Na~~FLk~~G~~~i~i 180 (231)
T COG1889 126 IIPILEDARKPEKYRH----LVEKVDVIYQDV--AQPNQAEILAD-NAEFFLKKGGYVVIAI 180 (231)
T ss_pred ceeeecccCCcHHhhh----hcccccEEEEec--CCchHHHHHHH-HHHHhcccCCeEEEEE
Confidence 5566788865432221 125689999995 22222222211 1235799999766653
|
|
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.44 E-value=0.064 Score=50.66 Aligned_cols=87 Identities=8% Similarity=0.083 Sum_probs=57.2
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccE
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDl 234 (317)
....|.|+|||-+-++. +. ...|+..|+-+.. -+++.+|+.+. |..+++.|+
T Consensus 180 ~~~vIaD~GCGEakiA~---~~-~~kV~SfDL~a~~-----------------~~V~~cDm~~v-------Pl~d~svDv 231 (325)
T KOG3045|consen 180 KNIVIADFGCGEAKIAS---SE-RHKVHSFDLVAVN-----------------ERVIACDMRNV-------PLEDESVDV 231 (325)
T ss_pred CceEEEecccchhhhhh---cc-ccceeeeeeecCC-----------------CceeeccccCC-------cCccCcccE
Confidence 46789999999988775 32 2348887764311 13566777653 345789999
Q ss_pred EEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCC
Q 021116 235 MSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPL 271 (317)
Q Consensus 235 V~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~ 271 (317)
++..-.....++.+.+... .|+|++||.+|+..-.
T Consensus 232 aV~CLSLMgtn~~df~kEa--~RiLk~gG~l~IAEv~ 266 (325)
T KOG3045|consen 232 AVFCLSLMGTNLADFIKEA--NRILKPGGLLYIAEVK 266 (325)
T ss_pred EEeeHhhhcccHHHHHHHH--HHHhccCceEEEEehh
Confidence 9987533223444444443 4799999999987653
|
|
| >PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre | Back alignment and domain information |
|---|
Probab=93.80 E-value=0.25 Score=43.30 Aligned_cols=99 Identities=15% Similarity=0.112 Sum_probs=54.9
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccE
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDl 234 (317)
.+.+|+=+||=|-...+........+++..|.|.+-. .... + .++.-|...-..-... -.++||+
T Consensus 25 ~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~RF~-~~~~-~----------~F~fyD~~~p~~~~~~---l~~~~d~ 89 (162)
T PF10237_consen 25 DDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRRFE-QFGG-D----------EFVFYDYNEPEELPEE---LKGKFDV 89 (162)
T ss_pred CCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecchHH-hcCC-c----------ceEECCCCChhhhhhh---cCCCceE
Confidence 4689999988886666644122345799999999764 3211 1 1222222211110000 1368999
Q ss_pred EEECCCCCCcc-HHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 235 MSVTPPYTAVD-YEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 235 V~~dPPy~~~~-~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
|++||||.... ..+....+. -++++++.+++.+.
T Consensus 90 vv~DPPFl~~ec~~k~a~ti~--~L~k~~~kii~~Tg 124 (162)
T PF10237_consen 90 VVIDPPFLSEECLTKTAETIR--LLLKPGGKIILCTG 124 (162)
T ss_pred EEECCCCCCHHHHHHHHHHHH--HHhCccceEEEecH
Confidence 99999994321 222222222 24577788877665
|
This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ). |
| >COG0863 DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=93.62 E-value=0.35 Score=45.10 Aligned_cols=47 Identities=28% Similarity=0.380 Sum_probs=39.8
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHh
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWT 202 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~ 202 (317)
..+..|||.|+|+|+.++.+...|- +.+++|++++-+ +.+.+-+...
T Consensus 221 ~~~diVlDpf~GsGtt~~aa~~~~r-~~ig~e~~~~y~-~~~~~r~~~~ 267 (302)
T COG0863 221 FPGDIVLDPFAGSGTTGIAAKNLGR-RFIGIEINPEYV-EVALKRLQEG 267 (302)
T ss_pred CCCCEEeecCCCCChHHHHHHHcCC-ceEEEecCHHHH-HHHHHHHHhh
Confidence 5789999999999999998777764 699999999998 8887766543
|
|
| >KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=93.40 E-value=0.15 Score=52.30 Aligned_cols=100 Identities=11% Similarity=0.096 Sum_probs=69.0
Q ss_pred CCeEEEECCCcchHHHHH---HH---cCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCC
Q 021116 156 PGRWLDLYSGTGSVGIEA---IS---RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKD 229 (317)
Q Consensus 156 ~~rVLDlgcGtG~l~Iea---as---~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~ 229 (317)
-.+++=+|+|-|-+.-.. ++ +.. ++++||.||.|+ - .-+|.+.-..+++|+++.+|+..|.. +.
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkV-klyavEKNPNAi-v-tL~~~n~~~W~~~Vtii~~DMR~w~a-------p~ 437 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKV-KLYAVEKNPNAI-V-TLQNRNFECWDNRVTIISSDMRKWNA-------PR 437 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCce-EEEEEecCcchh-h-hhhhhchhhhcCeeEEEeccccccCC-------ch
Confidence 456788899999886543 22 323 699999999998 3 33455444566889999999999852 12
Q ss_pred CCccEEEECC--CCCCc-cHHHHHHHHHHcCCcCCCeEEEE
Q 021116 230 GPFDYMSVTP--PYTAV-DYEVLMAQISKSALVGKDSFIVV 267 (317)
Q Consensus 230 ~~fDlV~~dP--Py~~~-~~~~~l~~L~~~~lLkpgG~ivv 267 (317)
++.|+++..- .|+-. .-.+.++-+. +.|+|+|+.+-
T Consensus 438 eq~DI~VSELLGSFGDNELSPECLDG~q--~fLkpdgIsIP 476 (649)
T KOG0822|consen 438 EQADIIVSELLGSFGDNELSPECLDGAQ--KFLKPDGISIP 476 (649)
T ss_pred hhccchHHHhhccccCccCCHHHHHHHH--hhcCCCceEcc
Confidence 6789988642 22221 3467787765 48999988663
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.72 E-value=1.2 Score=43.73 Aligned_cols=95 Identities=13% Similarity=-0.005 Sum_probs=60.6
Q ss_pred CCCCeEEEECCC-cchHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCC
Q 021116 154 LRPGRWLDLYSG-TGSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGP 231 (317)
Q Consensus 154 ~~~~rVLDlgcG-tG~l~Ieaas-~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~ 231 (317)
.++++|+=.|+| .|.+++..++ .| .+|+++|.+++.. +.|+ .+|.+ .++...-.+..+.. .+.
T Consensus 165 ~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~-e~a~----~lGAd---~~i~~~~~~~~~~~------~~~ 229 (339)
T COG1064 165 KPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKL-ELAK----KLGAD---HVINSSDSDALEAV------KEI 229 (339)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHH-HHHH----HhCCc---EEEEcCCchhhHHh------Hhh
Confidence 468888888776 4466676666 67 5899999999998 8876 45543 23442222233322 134
Q ss_pred ccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCC
Q 021116 232 FDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPL 271 (317)
Q Consensus 232 fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~ 271 (317)
||+|+.--| . ..++..++ .|+++|.+++.-..
T Consensus 230 ~d~ii~tv~-~-~~~~~~l~------~l~~~G~~v~vG~~ 261 (339)
T COG1064 230 ADAIIDTVG-P-ATLEPSLK------ALRRGGTLVLVGLP 261 (339)
T ss_pred CcEEEECCC-h-hhHHHHHH------HHhcCCEEEEECCC
Confidence 999998654 2 23344443 57899999877655
|
|
| >KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=92.66 E-value=0.34 Score=45.12 Aligned_cols=95 Identities=15% Similarity=0.184 Sum_probs=58.9
Q ss_pred CCeEEEECCCcchHHHHHHHc--------CCC--EEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHH------HH
Q 021116 156 PGRWLDLYSGTGSVGIEAISR--------GCS--EVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET------FL 219 (317)
Q Consensus 156 ~~rVLDlgcGtG~l~Ieaas~--------Ga~--~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~------~l 219 (317)
-+|++|||+..|+.+-.+.++ +.. .+++||+.+.+= ++. +.-+++|+.. ++
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaP------------I~G-V~qlq~DIT~~stae~Ii 108 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAP------------IEG-VIQLQGDITSASTAEAII 108 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCc------------cCc-eEEeecccCCHhHHHHHH
Confidence 368999999999998755421 121 399999988542 122 4456677543 33
Q ss_pred HHHhhhcCCCCCccEEEECC-CCCCc--cHHHH------HHHHH-HcCCcCCCeEEEEE
Q 021116 220 ERAEQFVGKDGPFDYMSVTP-PYTAV--DYEVL------MAQIS-KSALVGKDSFIVVE 268 (317)
Q Consensus 220 ~~~~~~~~~~~~fDlV~~dP-Py~~~--~~~~~------l~~L~-~~~lLkpgG~ivv~ 268 (317)
..+ .+++.|+|++|. |-..+ ++.+. +..|. ...+|++||.++.-
T Consensus 109 ~hf-----ggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaK 162 (294)
T KOG1099|consen 109 EHF-----GGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAK 162 (294)
T ss_pred HHh-----CCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehh
Confidence 333 346899999985 32222 22222 22232 35789999999854
|
|
| >PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species | Back alignment and domain information |
|---|
Probab=92.62 E-value=0.17 Score=44.59 Aligned_cols=117 Identities=22% Similarity=0.264 Sum_probs=68.6
Q ss_pred CCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCce-EEEEecHHHHHHHHhhhcCCCCCccE
Q 021116 156 PGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVS-SIHTVRVETFLERAEQFVGKDGPFDY 234 (317)
Q Consensus 156 ~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v-~ii~gD~~~~l~~~~~~~~~~~~fDl 234 (317)
+++++=+|+..=.+-+.|+..|+++|..||.|+--+ + .+. .+++ ++...|...-.... .++||.
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i-~--~~~------~dr~ssi~p~df~~~~~~y------~~~fD~ 66 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEI-Q--EEF------RDRLSSILPVDFAKNWQKY------AGSFDF 66 (177)
T ss_pred CceEEEEecCCchhhHHHHHcCCceEEEEeeccccc-C--ccc------ccccccccHHHHHHHHHHh------hccchh
Confidence 567888888877777778889999999999998544 2 111 1221 23333433222222 367887
Q ss_pred EEE-------------CCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCCCCCccccCCCeEEEEEeecCceEEE
Q 021116 235 MSV-------------TPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDRRFGRTHLA 296 (317)
Q Consensus 235 V~~-------------dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~~~l~~~~~~~~~~~~r~yG~~~l~ 296 (317)
+.+ ||--..++..+ +..+. ++||+||.+++..+...+-. .| -.+|.||..++.
T Consensus 67 ~as~~siEh~GLGRYGDPidp~Gdl~~-m~~i~--~vLK~GG~L~l~vPvG~d~i----~f--NahRiYg~~rL~ 132 (177)
T PF03269_consen 67 AASFSSIEHFGLGRYGDPIDPIGDLRA-MAKIK--CVLKPGGLLFLGVPVGTDAI----QF--NAHRIYGPIRLA 132 (177)
T ss_pred hheechhccccccccCCCCCccccHHH-HHHHH--HhhccCCeEEEEeecCCcce----EE--ecceeecHhHHH
Confidence 665 22100112222 22332 58999999999998765422 12 245778766554
|
|
| >COG1743 Adenine-specific DNA methylase containing a Zn-ribbon [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=92.35 E-value=0.14 Score=54.63 Aligned_cols=46 Identities=35% Similarity=0.518 Sum_probs=40.5
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHH
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEW 201 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~ 201 (317)
..+..++|.|+|-|++.+|+++.|+ .|++||.||.+. -..++-++.
T Consensus 89 ~~~~~~lDPfAG~GSIPlEAlRLG~-~v~AvelnPvAy-lfLKavlEy 134 (875)
T COG1743 89 FEGPKLLDPFAGGGSIPLEALRLGL-EVVAVELNPVAY-LFLKAVLEY 134 (875)
T ss_pred ccCCcccccccCCCccchHHHhcCc-eeEEEecccHHH-HHHHHHHhc
Confidence 3577899999999999999999997 599999999997 778777664
|
|
| >PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function | Back alignment and domain information |
|---|
Probab=92.13 E-value=0.19 Score=42.11 Aligned_cols=75 Identities=15% Similarity=0.139 Sum_probs=47.7
Q ss_pred eEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCC---cc--HHHHHHHHHHcCCcCCCeEEEEEeCCCCCc--cccCC
Q 021116 208 SSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTA---VD--YEVLMAQISKSALVGKDSFIVVEYPLRTDM--LDTCG 280 (317)
Q Consensus 208 v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~---~~--~~~~l~~L~~~~lLkpgG~ivv~~~~~~~l--~~~~~ 280 (317)
++++.+|+.+.+..+ ...||+|++|+ |.. .. -.++++.|. +++++||++...+... .+ .....
T Consensus 33 L~L~~gDa~~~l~~l------~~~~Da~ylDg-FsP~~nPelWs~e~~~~l~--~~~~~~~~l~Tys~a~-~Vr~~L~~a 102 (124)
T PF05430_consen 33 LTLWFGDAREMLPQL------DARFDAWYLDG-FSPAKNPELWSEELFKKLA--RLSKPGGTLATYSSAG-AVRRALQQA 102 (124)
T ss_dssp EEEEES-HHHHHHHB-------T-EEEEEE-S-S-TTTSGGGSSHHHHHHHH--HHEEEEEEEEES--BH-HHHHHHHHC
T ss_pred EEEEEcHHHHHHHhC------cccCCEEEecC-CCCcCCcccCCHHHHHHHH--HHhCCCcEEEEeechH-HHHHHHHHc
Confidence 567889999998876 37899999997 332 11 267787776 3789999887754432 22 11358
Q ss_pred CeEEEEEeecCc
Q 021116 281 CLVKIKDRRFGR 292 (317)
Q Consensus 281 ~~~~~~~r~yG~ 292 (317)
||.+.+...||.
T Consensus 103 GF~v~~~~g~g~ 114 (124)
T PF05430_consen 103 GFEVEKVPGFGR 114 (124)
T ss_dssp TEEEEEEE-STT
T ss_pred CCEEEEcCCCCC
Confidence 999988888875
|
; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A. |
| >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases | Back alignment and domain information |
|---|
Probab=91.70 E-value=0.13 Score=45.45 Aligned_cols=42 Identities=19% Similarity=0.229 Sum_probs=24.5
Q ss_pred ccEEEECCCCCCc-c------------HHHHHHHH----H-HcCCcCCCeEEEEEeCCCC
Q 021116 232 FDYMSVTPPYTAV-D------------YEVLMAQI----S-KSALVGKDSFIVVEYPLRT 273 (317)
Q Consensus 232 fDlV~~dPPy~~~-~------------~~~~l~~L----~-~~~lLkpgG~ivv~~~~~~ 273 (317)
.|+|+.||||... . .++.++.+ . ..++|+|+|.+++.+....
T Consensus 1 VdliitDPPY~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~rvLk~~g~~~i~~~~~~ 60 (231)
T PF01555_consen 1 VDLIITDPPYNIGKDYNNYFDYGDNKNHEEYLEWMEEWLKECYRVLKPGGSIFIFIDDRE 60 (231)
T ss_dssp EEEEEE---TSSSCS-----CSCHCCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE-CCE
T ss_pred CCEEEECCCCCCCCCcchhhhccCCCCHHHHHHHHHHHHHHHHhhcCCCeeEEEEecchh
Confidence 4899999999743 2 22222222 1 2479999999999887553
|
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... |
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.65 E-value=0.49 Score=48.16 Aligned_cols=113 Identities=18% Similarity=0.179 Sum_probs=75.2
Q ss_pred CCeEEEECCCcchHHHHH-HHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccE
Q 021116 156 PGRWLDLYSGTGSVGIEA-ISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (317)
Q Consensus 156 ~~rVLDlgcGtG~l~Iea-as~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDl 234 (317)
+..+|=+|=|.|.++... .+.+..++++||++|.++ +.|+.+.....- ++..++..|..+++....+.-..+..||+
T Consensus 296 ~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l-~va~q~f~f~q~-~r~~V~i~dGl~~~~~~~k~~~~~~~~dv 373 (482)
T KOG2352|consen 296 GGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEML-EVATQYFGFMQS-DRNKVHIADGLDFLQRTAKSQQEDICPDV 373 (482)
T ss_pred cCcEEEEecCCCccccceeeecCccceeEEEEChhHh-hccHhhhchhhh-hhhhhhHhhchHHHHHHhhccccccCCcE
Confidence 466777888888887643 345656899999999999 999988765432 24556777888887766533234567999
Q ss_pred EEECC--CCCCcc--------HHHHHHHHHHcCCcCCCeEEEEEeCCC
Q 021116 235 MSVTP--PYTAVD--------YEVLMAQISKSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 235 V~~dP--Py~~~~--------~~~~l~~L~~~~lLkpgG~ivv~~~~~ 272 (317)
++.|- +-..+. ....+.... ..|.|.|.+++.-..+
T Consensus 374 l~~dvds~d~~g~~~pp~~fva~~~l~~~k--~~l~p~g~f~inlv~r 419 (482)
T KOG2352|consen 374 LMVDVDSKDSHGMQCPPPAFVAQVALQPVK--MILPPRGMFIINLVTR 419 (482)
T ss_pred EEEECCCCCcccCcCCchHHHHHHHHHHHh--hccCccceEEEEEecC
Confidence 99852 112111 123333333 5799999998875544
|
|
| >KOG2920 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.49 E-value=0.15 Score=48.54 Aligned_cols=38 Identities=32% Similarity=0.462 Sum_probs=34.3
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHH
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVV 191 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al 191 (317)
..+++|||+|||+|.-++.+...|...+++.|.|.+.+
T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl 152 (282)
T KOG2920|consen 115 FSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVL 152 (282)
T ss_pred ecCceeEecCCcccccchhhhhhccceeeeEecchhhe
Confidence 57899999999999999998888877899999999876
|
|
| >KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=91.11 E-value=2.2 Score=41.58 Aligned_cols=102 Identities=15% Similarity=0.069 Sum_probs=59.1
Q ss_pred CCCCeEEEECCCc-chHHHHHH-HcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEe-c-HHHHHHHHhhhcCCC
Q 021116 154 LRPGRWLDLYSGT-GSVGIEAI-SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTV-R-VETFLERAEQFVGKD 229 (317)
Q Consensus 154 ~~~~rVLDlgcGt-G~l~Ieaa-s~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~g-D-~~~~l~~~~~~~~~~ 229 (317)
..+.+||=+|||. |.+++..+ ..|+.+|+.+|.++..+ +.|++ +|.+. +..... + ..++.....+..+ .
T Consensus 168 k~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rl-e~Ak~----~Ga~~-~~~~~~~~~~~~~~~~v~~~~g-~ 240 (354)
T KOG0024|consen 168 KKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRL-ELAKK----FGATV-TDPSSHKSSPQELAELVEKALG-K 240 (354)
T ss_pred ccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHH-HHHHH----hCCeE-EeeccccccHHHHHHHHHhhcc-c
Confidence 4689999998885 44444444 46999999999999999 99876 67642 222211 1 2222222221111 2
Q ss_pred CCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 230 GPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 230 ~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
..||+.|-.- -.+..++... .-++.+|.+++.-
T Consensus 241 ~~~d~~~dCs-----G~~~~~~aai--~a~r~gGt~vlvg 273 (354)
T KOG0024|consen 241 KQPDVTFDCS-----GAEVTIRAAI--KATRSGGTVVLVG 273 (354)
T ss_pred cCCCeEEEcc-----CchHHHHHHH--HHhccCCEEEEec
Confidence 3488888542 1233333322 1478899966544
|
|
| >PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes | Back alignment and domain information |
|---|
Probab=90.61 E-value=0.25 Score=45.17 Aligned_cols=40 Identities=18% Similarity=0.329 Sum_probs=27.9
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHH
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLI 196 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar 196 (317)
...+++|+|||+|++++.+... ..+|+.-|+++..+ ...+
T Consensus 20 ~~~~~vepF~G~g~V~~~~~~~-~~~vi~ND~~~~l~-~~~~ 59 (260)
T PF02086_consen 20 KHKTYVEPFAGGGSVFLNLKQP-GKRVIINDINPDLI-NFWK 59 (260)
T ss_dssp S-SEEEETT-TTSHHHHCC----SSEEEEEES-HHHH-HHHH
T ss_pred CCCEEEEEecchhHHHHHhccc-ccceeeeechHHHH-HHHH
Confidence 4789999999999999876554 45799999999765 5544
|
There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B. |
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.56 E-value=1.1 Score=45.76 Aligned_cols=101 Identities=13% Similarity=0.169 Sum_probs=66.0
Q ss_pred eEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEE
Q 021116 158 RWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSV 237 (317)
Q Consensus 158 rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~ 237 (317)
++|-+|||.--+....-..|...|+.+|+++-++......|+... ....+...|+.... .++++||+|+.
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~---~~~~~~~~d~~~l~-------fedESFdiVId 120 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKER---PEMQMVEMDMDQLV-------FEDESFDIVID 120 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccCC---cceEEEEecchhcc-------CCCcceeEEEe
Confidence 899999999999888878888889999999999833334454322 23678888876542 35788999886
Q ss_pred CCCCCC--cc----H--HHHHHHHH-HcCCcCCCeEEEEE
Q 021116 238 TPPYTA--VD----Y--EVLMAQIS-KSALVGKDSFIVVE 268 (317)
Q Consensus 238 dPPy~~--~~----~--~~~l~~L~-~~~lLkpgG~ivv~ 268 (317)
=+-... .+ + ...-..+. .+++++++|+.+..
T Consensus 121 kGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~sv 160 (482)
T KOG2352|consen 121 KGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISV 160 (482)
T ss_pred cCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEE
Confidence 321110 01 1 11112222 25789999986543
|
|
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=89.86 E-value=0.095 Score=48.08 Aligned_cols=40 Identities=25% Similarity=0.258 Sum_probs=31.2
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHH
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLI 196 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar 196 (317)
.+.++||+|+|-|-++...+ .-..+|++-|.+..|. ...+
T Consensus 112 ~~~~lLDlGAGdGeit~~m~-p~feevyATElS~tMr-~rL~ 151 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMA-PTFEEVYATELSWTMR-DRLK 151 (288)
T ss_pred CCeeEEeccCCCcchhhhhc-chHHHHHHHHhhHHHH-HHHh
Confidence 46899999999999997543 3356799999999886 5543
|
|
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=89.84 E-value=0.85 Score=45.00 Aligned_cols=129 Identities=15% Similarity=0.087 Sum_probs=66.5
Q ss_pred CChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHhHHHhCCCCce
Q 021116 131 PMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVS 208 (317)
Q Consensus 131 pt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~--Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v 208 (317)
|.++.-..+..+-|+... .+....++||+|.|.|+...++-.- --..++.+|.|+.. ...-..++++-...+.
T Consensus 92 p~~Yasv~asL~~L~~~~---~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~l--rkV~~tl~~nv~t~~t 166 (484)
T COG5459 92 PQTYASVRASLDELQKRV---PDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPAL--RKVGDTLAENVSTEKT 166 (484)
T ss_pred hHHHHHHHHHHHHHHHhC---CCcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHH--HHHHHHHHhhcccccC
Confidence 444444444445554431 2356788999999998766533221 23457888988854 3334445444332222
Q ss_pred EEEEecHHHHHHHHhhhcCCCCCccEEEE-CC--CCC-CccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 209 SIHTVRVETFLERAEQFVGKDGPFDYMSV-TP--PYT-AVDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 209 ~ii~gD~~~~l~~~~~~~~~~~~fDlV~~-dP--Py~-~~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
..-..|+..-...+ ...+.|++|++ |- |-. ...+...++.+.+ ++.|||.+|+...
T Consensus 167 d~r~s~vt~dRl~l----p~ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~--l~~~gg~lVivEr 226 (484)
T COG5459 167 DWRASDVTEDRLSL----PAADLYTLAIVLDELLPDGNEKPIQVNIERLWN--LLAPGGHLVIVER 226 (484)
T ss_pred CCCCCccchhccCC----CccceeehhhhhhhhccccCcchHHHHHHHHHH--hccCCCeEEEEeC
Confidence 23334433221111 12356787775 21 111 1122334555443 7899999888765
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=89.16 E-value=4.1 Score=39.59 Aligned_cols=100 Identities=16% Similarity=0.061 Sum_probs=56.3
Q ss_pred CCCeEEEECCCc-chHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEe-cHHHHHHHHhhhcCCCCC
Q 021116 155 RPGRWLDLYSGT-GSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTV-RVETFLERAEQFVGKDGP 231 (317)
Q Consensus 155 ~~~rVLDlgcGt-G~l~Ieaas-~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~g-D~~~~l~~~~~~~~~~~~ 231 (317)
.+.+|+=+|||. |.+++.+++ .|+.+|+++|.++..+ +.|++- .+. +.+..... +......... ....
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl-~~A~~~---~g~-~~~~~~~~~~~~~~~~~~t----~g~g 238 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERL-ELAKEA---GGA-DVVVNPSEDDAGAEILELT----GGRG 238 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHH-HHHHHh---CCC-eEeecCccccHHHHHHHHh----CCCC
Confidence 344899998775 444444443 6888999999999999 888762 221 11111111 2222222221 1236
Q ss_pred ccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 232 FDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 232 fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
+|++|--- +. ...++... ..++++|.+++.--
T Consensus 239 ~D~vie~~----G~-~~~~~~ai--~~~r~gG~v~~vGv 270 (350)
T COG1063 239 ADVVIEAV----GS-PPALDQAL--EALRPGGTVVVVGV 270 (350)
T ss_pred CCEEEECC----CC-HHHHHHHH--HHhcCCCEEEEEec
Confidence 99999642 22 22333332 26899999876543
|
|
| >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=89.14 E-value=0.97 Score=36.55 Aligned_cols=88 Identities=14% Similarity=0.048 Sum_probs=55.5
Q ss_pred CcchHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEe---cHHHHHHHHhhhcCCCCCccEEEECCC
Q 021116 165 GTGSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTV---RVETFLERAEQFVGKDGPFDYMSVTPP 240 (317)
Q Consensus 165 GtG~l~Ieaas-~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~g---D~~~~l~~~~~~~~~~~~fDlV~~dPP 240 (317)
|.|.+++.+++ .| .+|+++|.++... +.+++ +|.. .++.. |..+.+.... ....+|+||-...
T Consensus 1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~-~~~~~----~Ga~---~~~~~~~~~~~~~i~~~~----~~~~~d~vid~~g 67 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG-AKVIATDRSEEKL-ELAKE----LGAD---HVIDYSDDDFVEQIRELT----GGRGVDVVIDCVG 67 (130)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEESSHHHH-HHHHH----TTES---EEEETTTSSHHHHHHHHT----TTSSEEEEEESSS
T ss_pred ChHHHHHHHHHHcC-CEEEEEECCHHHH-HHHHh----hccc---cccccccccccccccccc----ccccceEEEEecC
Confidence 56888887665 57 6899999999987 88764 4532 23332 3444444432 1247999987642
Q ss_pred CCCccHHHHHHHHHHcCCcCCCeEEEEEeCCC
Q 021116 241 YTAVDYEVLMAQISKSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 241 y~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~ 272 (317)
. ...++.... .++++|.+++.-...
T Consensus 68 ----~-~~~~~~~~~--~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 68 ----S-GDTLQEAIK--LLRPGGRIVVVGVYG 92 (130)
T ss_dssp ----S-HHHHHHHHH--HEEEEEEEEEESSTS
T ss_pred ----c-HHHHHHHHH--HhccCCEEEEEEccC
Confidence 1 233333322 689999999876654
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: |
| >PRK10904 DNA adenine methylase; Provisional | Back alignment and domain information |
|---|
Probab=88.93 E-value=0.95 Score=42.64 Aligned_cols=69 Identities=12% Similarity=-0.004 Sum_probs=42.1
Q ss_pred ceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCC------------c--c---HHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 207 VSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTA------------V--D---YEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 207 ~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~------------~--~---~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
++++.+.|..+.+... +.=|+|++||||.. . . ..++.+.+.. +...++.++++.
T Consensus 157 ~v~i~~~Df~~~i~~~-------~~~~fvYlDPPY~~~~~~~~f~~y~~~~f~~~dh~~La~~l~~--l~~~~~k~ilS~ 227 (271)
T PRK10904 157 NAFFYCESYADSMARA-------DKGSVVYCDPPYAPLSATANFTAYHTNSFSLEQQAHLAEIAEG--LVERHIPVLISN 227 (271)
T ss_pred CCEEEECCHHHHHhhc-------CCCcEEEECCCCCCCCCCCCCcCcccCCCCHHHHHHHHHHHHH--HHhCCCEEEEEe
Confidence 3789999999987642 34589999999931 0 1 2233333332 224577888887
Q ss_pred CCCCCccccCCCeEE
Q 021116 270 PLRTDMLDTCGCLVK 284 (317)
Q Consensus 270 ~~~~~l~~~~~~~~~ 284 (317)
.....+.++..+|.+
T Consensus 228 ~d~~~i~elY~~~~i 242 (271)
T PRK10904 228 HDTMLTREWYQRAKL 242 (271)
T ss_pred CCCHHHHHHHcCCcE
Confidence 755444444445544
|
|
| >KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.89 E-value=3.5 Score=39.81 Aligned_cols=108 Identities=18% Similarity=0.229 Sum_probs=75.7
Q ss_pred CCCeEEEECCCcchHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHhHHH--hCCC-CceEEEEecHHHHHHHHhhhcCCCC
Q 021116 155 RPGRWLDLYSGTGSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEW--TGFL-DVSSIHTVRVETFLERAEQFVGKDG 230 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas-~Ga~~V~aVDin~~al~~~ar~N~~~--~gl~-~~v~ii~gD~~~~l~~~~~~~~~~~ 230 (317)
..++||=+|-|-|.+--+-+. .-...+..+|++...+ +..++=+.. .|++ .++.++-||...+++... .+
T Consensus 121 npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vi-e~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~-----~~ 194 (337)
T KOG1562|consen 121 NPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVI-ESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLK-----EN 194 (337)
T ss_pred CCCeEEEEecCCccceeeeeccccccceeeehhhHHHH-HHHHHHhHHHhcccCCCceEEEeccHHHHHHHhc-----cC
Confidence 468899999999988876543 3345799999999988 888775443 3565 468899999999987762 47
Q ss_pred CccEEEECCCCCCcc----H-HHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 231 PFDYMSVTPPYTAVD----Y-EVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 231 ~fDlV~~dPPy~~~~----~-~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
+||+|+.|----.+. + +.....+. +.|+++|++++...
T Consensus 195 ~~dVii~dssdpvgpa~~lf~~~~~~~v~--~aLk~dgv~~~q~e 237 (337)
T KOG1562|consen 195 PFDVIITDSSDPVGPACALFQKPYFGLVL--DALKGDGVVCTQGE 237 (337)
T ss_pred CceEEEEecCCccchHHHHHHHHHHHHHH--HhhCCCcEEEEecc
Confidence 899999863111111 1 23333343 36899999987653
|
|
| >KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=88.35 E-value=2.3 Score=40.94 Aligned_cols=81 Identities=14% Similarity=0.144 Sum_probs=59.4
Q ss_pred CCCCeEEEECCCcc---hHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHH---HHHHhhhcC
Q 021116 154 LRPGRWLDLYSGTG---SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF---LERAEQFVG 227 (317)
Q Consensus 154 ~~~~rVLDlgcGtG---~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~---l~~~~~~~~ 227 (317)
..++.||==|+|+| .++.|++++|+ ++...|+|++.. +...++++.+| ++..+..|+.+. .....+...
T Consensus 36 v~g~~vLITGgg~GlGr~ialefa~rg~-~~vl~Din~~~~-~etv~~~~~~g---~~~~y~cdis~~eei~~~a~~Vk~ 110 (300)
T KOG1201|consen 36 VSGEIVLITGGGSGLGRLIALEFAKRGA-KLVLWDINKQGN-EETVKEIRKIG---EAKAYTCDISDREEIYRLAKKVKK 110 (300)
T ss_pred ccCCEEEEeCCCchHHHHHHHHHHHhCC-eEEEEeccccch-HHHHHHHHhcC---ceeEEEecCCCHHHHHHHHHHHHH
Confidence 56899999999998 46778899998 699999999998 77778777776 466777776433 222222333
Q ss_pred CCCCccEEEECC
Q 021116 228 KDGPFDYMSVTP 239 (317)
Q Consensus 228 ~~~~fDlV~~dP 239 (317)
+-+..|+++-|.
T Consensus 111 e~G~V~ILVNNA 122 (300)
T KOG1201|consen 111 EVGDVDILVNNA 122 (300)
T ss_pred hcCCceEEEecc
Confidence 446889999874
|
|
| >TIGR00571 dam DNA adenine methylase (dam) | Back alignment and domain information |
|---|
Probab=88.09 E-value=1 Score=42.32 Aligned_cols=68 Identities=9% Similarity=0.062 Sum_probs=40.2
Q ss_pred ceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCC------------c-----cHHHHHHHHHHcCCcC-CCeEEEEE
Q 021116 207 VSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTA------------V-----DYEVLMAQISKSALVG-KDSFIVVE 268 (317)
Q Consensus 207 ~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~------------~-----~~~~~l~~L~~~~lLk-pgG~ivv~ 268 (317)
++++.++|..+.+... ..=|+|++||||.. . +..++.+.|.+ ++ .++.++++
T Consensus 155 ~v~i~~~Df~~~i~~~-------~~~dfvYlDPPY~~~~~~~~f~~y~~~~f~~~dh~~L~~~l~~---l~~~~~~~~lS 224 (266)
T TIGR00571 155 NTTFLCGSFEKILAMV-------DDDSFVYCDPPYLPLSATYNFTGYHTNGFDEDEQKRLANFCKS---LDERGIKFLLS 224 (266)
T ss_pred CCEEEECCHHHHHhhc-------CCCCEEEECCCCCCCCCCCCccCccCCCCCHHHHHHHHHHHHH---HHhCCCEEEEE
Confidence 3788899998887542 34579999999931 0 12344444432 33 46677777
Q ss_pred eCCCCCccccCCCeEE
Q 021116 269 YPLRTDMLDTCGCLVK 284 (317)
Q Consensus 269 ~~~~~~l~~~~~~~~~ 284 (317)
......+.+.-.+|.+
T Consensus 225 ~~~~~~i~ely~~~~~ 240 (266)
T TIGR00571 225 NSDSSFTRELYQGFNV 240 (266)
T ss_pred eCCCHHHHHHhcCCeE
Confidence 7643333333345543
|
All proteins in this family for which functions are known are DNA-adenine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The DNA adenine methylase (dam) of E. coli and related species is instrumental in distinguishing the newly synthesized strand during DNA replication for methylation-directed mismatch repair. This family includes several phage methylases and a number of different restriction enzyme chromosomal site-specific modification systems. |
| >PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function | Back alignment and domain information |
|---|
Probab=87.97 E-value=1.2 Score=37.20 Aligned_cols=50 Identities=24% Similarity=0.216 Sum_probs=30.5
Q ss_pred EECCCcc--hHHHHHH--HcC-CCEEEEEeCCHHHHHHHHHHh--HHHhCCCCceEEE
Q 021116 161 DLYSGTG--SVGIEAI--SRG-CSEVHFVEMDPWVVSNVLIPN--LEWTGFLDVSSIH 211 (317)
Q Consensus 161 DlgcGtG--~l~Ieaa--s~G-a~~V~aVDin~~al~~~ar~N--~~~~gl~~~v~ii 211 (317)
|+||+.| ...+..+ ..+ ..+|+++|.+|..+ +.++.| +..++..+.++++
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~-~~l~~~~~~~l~~~~~~~~~~ 57 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNF-EKLKRNLNLALNDKDGEVEFH 57 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHH-HHHHHH--HHHTTTSTTGGEE
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHH-HHHhHHHHHHhcCCCceEEEE
Confidence 8999999 5555443 232 35799999999998 999999 6666433223333
|
; PDB: 2PY6_A. |
| >KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=87.40 E-value=2.9 Score=41.76 Aligned_cols=109 Identities=14% Similarity=-0.023 Sum_probs=67.9
Q ss_pred CCCCeEEEECCCcchHHHHH-HHcCCCEEEEEeCCHHHHHHHHHHhHHH-------hCC-CCceEEEEecHHHHH--HHH
Q 021116 154 LRPGRWLDLYSGTGSVGIEA-ISRGCSEVHFVEMDPWVVSNVLIPNLEW-------TGF-LDVSSIHTVRVETFL--ERA 222 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Iea-as~Ga~~V~aVDin~~al~~~ar~N~~~-------~gl-~~~v~ii~gD~~~~l--~~~ 222 (317)
.+++...|||+|.|.+.... +..++..-+|+|+..... ++|..|.+. +|- .+.++.++++..+-- ...
T Consensus 191 g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS-~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~~~~v~eI 269 (419)
T KOG3924|consen 191 GPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPS-QCAELNKEEFKKLMKHFGKKPNKIETIHGSFLDPKRVTEI 269 (419)
T ss_pred CCCCcccCCCcccchhhHHHHHhhccccccceeeecCcH-HHHHHHHHHHHHHHHHhCCCcCceeecccccCCHHHHHHH
Confidence 46789999999999888764 445677788999877764 777766554 344 345778888764322 111
Q ss_pred hhhcCCCCCccEEEECCC-CCCccHHHHHHHHHHcCCcCCCeEEEEEeCCC
Q 021116 223 EQFVGKDGPFDYMSVTPP-YTAVDYEVLMAQISKSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 223 ~~~~~~~~~fDlV~~dPP-y~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~ 272 (317)
....++||+|-- |......++-+.|. -+++|.+|+-..+..
T Consensus 270 ------~~eatvi~vNN~~Fdp~L~lr~~eil~---~ck~gtrIiS~~~L~ 311 (419)
T KOG3924|consen 270 ------QTEATVIFVNNVAFDPELKLRSKEILQ---KCKDGTRIISSKPLV 311 (419)
T ss_pred ------hhcceEEEEecccCCHHHHHhhHHHHh---hCCCcceEecccccc
Confidence 246789998632 11111111122222 478888888766543
|
|
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=87.33 E-value=6.3 Score=37.81 Aligned_cols=98 Identities=13% Similarity=-0.035 Sum_probs=53.8
Q ss_pred CCCCeEEEECCCcchHHHHH---HH-cCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCC
Q 021116 154 LRPGRWLDLYSGTGSVGIEA---IS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKD 229 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Iea---as-~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~ 229 (317)
.++.+||=.|| |.+|..+ ++ .|+.+|+++|.+++.. +.+++ +|.+.-+.....|..+.+.... ..
T Consensus 175 ~~g~~VlV~G~--g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~-~~~~~----~Ga~~~i~~~~~~~~~~i~~~~----~~ 243 (358)
T TIGR03451 175 KRGDSVAVIGC--GGVGDAAIAGAALAGASKIIAVDIDDRKL-EWARE----FGATHTVNSSGTDPVEAIRALT----GG 243 (358)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHHcCCCeEEEEcCCHHHH-HHHHH----cCCceEEcCCCcCHHHHHHHHh----CC
Confidence 35788887764 5666543 33 5776799999999887 77753 4542111111223333332221 12
Q ss_pred CCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 230 GPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 230 ~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
..+|+||--- +. ...++... ..++++|++++.-
T Consensus 244 ~g~d~vid~~----g~-~~~~~~~~--~~~~~~G~iv~~G 276 (358)
T TIGR03451 244 FGADVVIDAV----GR-PETYKQAF--YARDLAGTVVLVG 276 (358)
T ss_pred CCCCEEEECC----CC-HHHHHHHH--HHhccCCEEEEEC
Confidence 3589887321 11 11222222 2579999988654
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=87.23 E-value=3.5 Score=39.09 Aligned_cols=114 Identities=17% Similarity=0.173 Sum_probs=58.6
Q ss_pred CeEEEECCCcchHH--HHHHH--cCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHh-----hhcC
Q 021116 157 GRWLDLYSGTGSVG--IEAIS--RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAE-----QFVG 227 (317)
Q Consensus 157 ~rVLDlgcGtG~l~--Ieaas--~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~-----~~~~ 227 (317)
.-+||+|||.=+.+ -|.+. ....+|+-||.||-++ ..++.-+..+.- .+..++++|+.+.-.-+. .+-.
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~-ah~ralL~~~~~-g~t~~v~aD~r~p~~iL~~p~~~~~lD 147 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVL-AHARALLADNPR-GRTAYVQADLRDPEAILAHPEVRGLLD 147 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHH-HCCHHHHTT-TT-SEEEEEE--TT-HHHHHCSHHHHCC--
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHH-HHHHhhhcCCCC-ccEEEEeCCCCCHHHHhcCHHHHhcCC
Confidence 57999999965433 23333 2345899999999998 888776655432 247899999876543322 0000
Q ss_pred CCCCccEEEECC-CCCC--ccHHHHHHHHHHcCCcCCCeEEEEEeCCCCC
Q 021116 228 KDGPFDYMSVTP-PYTA--VDYEVLMAQISKSALVGKDSFIVVEYPLRTD 274 (317)
Q Consensus 228 ~~~~fDlV~~dP-Py~~--~~~~~~l~~L~~~~lLkpgG~ivv~~~~~~~ 274 (317)
-+.+.=++++.- .|.. .+...++..+. ..|.+|.++++++.....
T Consensus 148 ~~rPVavll~~vLh~v~D~~dp~~iv~~l~--d~lapGS~L~ish~t~d~ 195 (267)
T PF04672_consen 148 FDRPVAVLLVAVLHFVPDDDDPAGIVARLR--DALAPGSYLAISHATDDG 195 (267)
T ss_dssp TTS--EEEECT-GGGS-CGCTHHHHHHHHH--CCS-TT-EEEEEEEB-TT
T ss_pred CCCCeeeeeeeeeccCCCccCHHHHHHHHH--HhCCCCceEEEEecCCCC
Confidence 111222333321 1111 23456677766 489999999999886643
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins | Back alignment and domain information |
|---|
Probab=87.19 E-value=3.6 Score=38.57 Aligned_cols=105 Identities=12% Similarity=0.044 Sum_probs=61.4
Q ss_pred CCeEEEECCCcchHHHHHH---H-cC--CCEEEEEeCC--------------------------HHHHHHHHHHhHHHhC
Q 021116 156 PGRWLDLYSGTGSVGIEAI---S-RG--CSEVHFVEMD--------------------------PWVVSNVLIPNLEWTG 203 (317)
Q Consensus 156 ~~rVLDlgcGtG~l~Ieaa---s-~G--a~~V~aVDin--------------------------~~al~~~ar~N~~~~g 203 (317)
...+++.||--|..++.++ . .+ ..++++.|.= ...+ +..++|++..|
T Consensus 75 pGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~-e~V~~n~~~~g 153 (248)
T PF05711_consen 75 PGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSL-EEVRENFARYG 153 (248)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHH-HHHHHCCCCTT
T ss_pred CeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCH-HHHHHHHHHcC
Confidence 4569999999998766432 1 22 3468877631 1245 66788888877
Q ss_pred C-CCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCccHHHHHHHHHH-cCCcCCCeEEEEEeC
Q 021116 204 F-LDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISK-SALVGKDSFIVVEYP 270 (317)
Q Consensus 204 l-~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~-~~lLkpgG~ivv~~~ 270 (317)
+ .++++++.|+..+-+... ..+++-++-+|- ..|+.....|.. .+.|.+||+|++..-
T Consensus 154 l~~~~v~~vkG~F~dTLp~~-----p~~~IAll~lD~----DlYesT~~aLe~lyprl~~GGiIi~DDY 213 (248)
T PF05711_consen 154 LLDDNVRFVKGWFPDTLPDA-----PIERIALLHLDC----DLYESTKDALEFLYPRLSPGGIIIFDDY 213 (248)
T ss_dssp TSSTTEEEEES-HHHHCCC------TT--EEEEEE-------SHHHHHHHHHHHGGGEEEEEEEEESST
T ss_pred CCcccEEEECCcchhhhccC-----CCccEEEEEEec----cchHHHHHHHHHHHhhcCCCeEEEEeCC
Confidence 6 467999999987765322 134566666773 346655555532 468999999998653
|
TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A. |
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.86 E-value=5.9 Score=37.80 Aligned_cols=95 Identities=13% Similarity=0.147 Sum_probs=53.2
Q ss_pred CCCCeEEEECCCcchHHHHH---H-HcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCC
Q 021116 154 LRPGRWLDLYSGTGSVGIEA---I-SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKD 229 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Iea---a-s~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~ 229 (317)
.++++||=.|| |.+|+.+ + .+|+.+|+++|.+++.+ +.+++ +|...-+..-..|..++.. ..
T Consensus 168 ~~g~~VlV~G~--G~vG~~aiqlak~~G~~~Vi~~~~~~~~~-~~a~~----lGa~~vi~~~~~~~~~~~~-------~~ 233 (343)
T PRK09880 168 LQGKRVFVSGV--GPIGCLIVAAVKTLGAAEIVCADVSPRSL-SLARE----MGADKLVNPQNDDLDHYKA-------EK 233 (343)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHHcCCcEEEEEeCCHHHH-HHHHH----cCCcEEecCCcccHHHHhc-------cC
Confidence 35788887765 6676643 2 35777899999999988 77753 4643111111122222211 12
Q ss_pred CCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 230 GPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 230 ~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
+.+|+||-.. +. ...++... +.++++|.+++.-
T Consensus 234 g~~D~vid~~----G~-~~~~~~~~--~~l~~~G~iv~~G 266 (343)
T PRK09880 234 GYFDVSFEVS----GH-PSSINTCL--EVTRAKGVMVQVG 266 (343)
T ss_pred CCCCEEEECC----CC-HHHHHHHH--HHhhcCCEEEEEc
Confidence 3589887532 11 11222222 2579999988653
|
|
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=86.85 E-value=6.5 Score=38.28 Aligned_cols=44 Identities=11% Similarity=0.040 Sum_probs=33.7
Q ss_pred CCCCeEEEECCCc-chHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHh
Q 021116 154 LRPGRWLDLYSGT-GSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPN 198 (317)
Q Consensus 154 ~~~~rVLDlgcGt-G~l~Ieaas-~Ga~~V~aVDin~~al~~~ar~N 198 (317)
.++.+||..|||+ |.+.+.+++ .|..+|+++|.+++.. +.+++.
T Consensus 183 ~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~-~~~~~~ 228 (386)
T cd08283 183 KPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERL-EMARSH 228 (386)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHH-HHHHHc
Confidence 3578999998876 666666555 5665799999999998 888764
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=86.78 E-value=1.2 Score=41.99 Aligned_cols=124 Identities=12% Similarity=0.069 Sum_probs=71.1
Q ss_pred CCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHH----cCCCEEEEEeCCHHHHHHHHHHhHHHhCCC
Q 021116 130 RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAIS----RGCSEVHFVEMDPWVVSNVLIPNLEWTGFL 205 (317)
Q Consensus 130 rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas----~Ga~~V~aVDin~~al~~~ar~N~~~~gl~ 205 (317)
.|-.+.++.+++.-+.+. ...++.+||=||+++|..--.... .|+ |++||.++++= ..+ -|++.-. .
T Consensus 135 nPfrSKLAA~I~gGvdni----hikpGsKVLYLGAasGttVSHvSDiVGpeG~--VYAVEfs~rsG-RdL-~nmAkkR-t 205 (317)
T KOG1596|consen 135 NPFRSKLAAGILGGVDNI----HIKPGSKVLYLGAASGTTVSHVSDIVGPEGC--VYAVEFSHRSG-RDL-INMAKKR-T 205 (317)
T ss_pred ChHHHHHHHHhhcCccce----eecCCceEEEeeccCCceeehhhcccCCCce--EEEEEecccch-HHH-HHHhhcc-C
Confidence 455555665554333221 113689999999999965433322 344 99999999874 333 3444322 2
Q ss_pred CceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 206 DVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 206 ~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
| +--+..|+..-.+..- .-+-.|+||.|-+- .+...++ +|.+...|+++|-++++..
T Consensus 206 N-iiPIiEDArhP~KYRm----lVgmVDvIFaDvaq--pdq~Riv-aLNA~~FLk~gGhfvisik 262 (317)
T KOG1596|consen 206 N-IIPIIEDARHPAKYRM----LVGMVDVIFADVAQ--PDQARIV-ALNAQYFLKNGGHFVISIK 262 (317)
T ss_pred C-ceeeeccCCCchheee----eeeeEEEEeccCCC--chhhhhh-hhhhhhhhccCCeEEEEEe
Confidence 3 4445567664322110 01468999999642 1222222 2334568999999988754
|
|
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=85.94 E-value=1.2 Score=43.31 Aligned_cols=36 Identities=17% Similarity=0.138 Sum_probs=30.3
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHH
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVV 191 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al 191 (317)
..-++|=+|||.|.++.+++..|.. +-+-|.+--|+
T Consensus 150 ~ki~iLvPGaGlGRLa~dla~~G~~-~qGNEfSy~Ml 185 (369)
T KOG2798|consen 150 TKIRILVPGAGLGRLAYDLACLGFK-CQGNEFSYFML 185 (369)
T ss_pred cCceEEecCCCchhHHHHHHHhccc-ccccHHHHHHH
Confidence 4678999999999999999998874 77778777776
|
|
| >KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=85.27 E-value=1.2 Score=44.20 Aligned_cols=83 Identities=16% Similarity=0.080 Sum_probs=61.7
Q ss_pred CCCCeEEEECCCcchHHHHHHH--cCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCC
Q 021116 154 LRPGRWLDLYSGTGSVGIEAIS--RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGP 231 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas--~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~ 231 (317)
.++.+|+|.||-.|.-++.++. ....++++.|.+...+ +..+.-+...|... ++...+|.... ... ..-..
T Consensus 212 ~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~-~tl~~~l~~ag~~~-~~~~~~df~~t-~~~----~~~~~ 284 (413)
T KOG2360|consen 212 RPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRA-ATLRKLLKIAGVSI-VESVEGDFLNT-ATP----EKFRD 284 (413)
T ss_pred CCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHH-HHHHHHHHHcCCCc-cccccccccCC-CCc----ccccc
Confidence 4679999999999988886543 3345799999999998 99999998888754 66667776543 111 11245
Q ss_pred ccEEEECCCCCC
Q 021116 232 FDYMSVTPPYTA 243 (317)
Q Consensus 232 fDlV~~dPPy~~ 243 (317)
...|++||+...
T Consensus 285 v~~iL~DpscSg 296 (413)
T KOG2360|consen 285 VTYILVDPSCSG 296 (413)
T ss_pred eeEEEeCCCCCC
Confidence 678999999753
|
|
| >COG4889 Predicted helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.90 E-value=5.9 Score=43.58 Aligned_cols=47 Identities=26% Similarity=0.283 Sum_probs=32.2
Q ss_pred CCCCeEEEECCCcchHHHHHHH---------cC-CCEEEEEeCCHHHHHHHHHHhHHH
Q 021116 154 LRPGRWLDLYSGTGSVGIEAIS---------RG-CSEVHFVEMDPWVVSNVLIPNLEW 201 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas---------~G-a~~V~aVDin~~al~~~ar~N~~~ 201 (317)
-++..|||.|+|||++-..+++ +. ..+.++.|+---+. -.|.-|++.
T Consensus 844 d~~vhilDpFtGTGtFi~RlL~alIs~edl~rKf~~eLhA~eIvLLsY-YIAaiNIe~ 900 (1518)
T COG4889 844 DQSVHILDPFTGTGTFIVRLLSALISDEDLKRKFQKELHAFEIVLLSY-YIAAINIEQ 900 (1518)
T ss_pred cCCeeeecCCCCccHHHHHHHHHhcCHHHHHHHHHhhhhHHHHHHHHH-HHHHhhHHH
Confidence 4678999999999999765543 21 23567777766665 566667664
|
|
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=82.78 E-value=12 Score=36.08 Aligned_cols=97 Identities=13% Similarity=0.066 Sum_probs=52.5
Q ss_pred CCCCeEEEECCCcchHHHHH---H-HcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCC
Q 021116 154 LRPGRWLDLYSGTGSVGIEA---I-SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKD 229 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Iea---a-s~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~ 229 (317)
..+++||=.|+ |.+|+.+ + .+|+.+|+++|.+++.+ +.+++ +|...-+.....|..+.+.... .
T Consensus 190 ~~g~~VlV~G~--G~vG~~a~~lak~~G~~~Vi~~~~~~~r~-~~a~~----~Ga~~~i~~~~~~~~~~i~~~~-----~ 257 (371)
T cd08281 190 RPGQSVAVVGL--GGVGLSALLGAVAAGASQVVAVDLNEDKL-ALARE----LGATATVNAGDPNAVEQVRELT-----G 257 (371)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHHcCCCcEEEEcCCHHHH-HHHHH----cCCceEeCCCchhHHHHHHHHh-----C
Confidence 35677877765 5666543 3 35776799999999987 77753 4553211111123222222221 2
Q ss_pred CCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 230 GPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 230 ~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
+.+|+||-.- +. ...++... +.++++|.+++.-
T Consensus 258 ~g~d~vid~~----G~-~~~~~~~~--~~l~~~G~iv~~G 290 (371)
T cd08281 258 GGVDYAFEMA----GS-VPALETAY--EITRRGGTTVTAG 290 (371)
T ss_pred CCCCEEEECC----CC-hHHHHHHH--HHHhcCCEEEEEc
Confidence 3689888532 11 11222221 2578899887643
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=82.36 E-value=17 Score=36.19 Aligned_cols=97 Identities=13% Similarity=0.065 Sum_probs=66.4
Q ss_pred eEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCc-eEEEEecHHHHHHHHhhhcCCCCCccEEE
Q 021116 158 RWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDV-SSIHTVRVETFLERAEQFVGKDGPFDYMS 236 (317)
Q Consensus 158 rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~-v~ii~gD~~~~l~~~~~~~~~~~~fDlV~ 236 (317)
+|+=++=.-|.+++.++..+. +.+ .|.......+++|++.||+... ++++... +-+ .+.+|+|+
T Consensus 47 ~~~i~nd~fGal~~~l~~~~~---~~~-~ds~~~~~~~~~n~~~n~~~~~~~~~~~~~--~~~---------~~~~d~vl 111 (378)
T PRK15001 47 PVLILNDAFGALSCALAEHKP---YSI-GDSYISELATRENLRLNGIDESSVKFLDST--ADY---------PQQPGVVL 111 (378)
T ss_pred CEEEEcCchhHHHHHHHhCCC---Cee-ehHHHHHHHHHHHHHHcCCCcccceeeccc--ccc---------cCCCCEEE
Confidence 788899999999997765443 322 3444433567889999998643 4444322 211 25699999
Q ss_pred ECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCC
Q 021116 237 VTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPL 271 (317)
Q Consensus 237 ~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~ 271 (317)
+=-|-.....+.++..+. ..|.+|+.|++-...
T Consensus 112 ~~~PK~~~~l~~~l~~l~--~~l~~~~~ii~g~~~ 144 (378)
T PRK15001 112 IKVPKTLALLEQQLRALR--KVVTSDTRIIAGAKA 144 (378)
T ss_pred EEeCCCHHHHHHHHHHHH--hhCCCCCEEEEEEec
Confidence 988876666777777776 489999998765543
|
|
| >KOG0919 consensus C-5 cytosine-specific DNA methylase [Transcription] | Back alignment and domain information |
|---|
Probab=80.39 E-value=1.8 Score=40.69 Aligned_cols=76 Identities=22% Similarity=0.381 Sum_probs=47.8
Q ss_pred CCeEEEECCCcchHH--HHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 156 PGRWLDLYSGTGSVG--IEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 156 ~~rVLDlgcGtG~l~--Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
.-+||++++|.|.+- ++.+.-.+.-|-++|+|+.|- +.-..|- +-++.....+-.-.+.++. .-++|
T Consensus 3 pLrVlelysg~ggmhyal~~a~ipaqiVaAiDvNtvAN-evY~~N~-h~~L~k~~~I~~lt~kefd---------~l~~~ 71 (338)
T KOG0919|consen 3 PLRVLELYSGHGGMHYALEDAQIPAQIVAAIDVNTVAN-EVYAHNY-HSNLVKTRNIQSLTVKEFD---------KLQAN 71 (338)
T ss_pred ceehhhhhhccchhhhhHhhhcCchhhEEEEecchhHH-HHHhcCc-ccchhhccccceeeHhhhh---------hcccc
Confidence 358999999999874 333444455699999999886 7766662 2222111112222333332 24689
Q ss_pred EEEECCCCC
Q 021116 234 YMSVTPPYT 242 (317)
Q Consensus 234 lV~~dPPy~ 242 (317)
.+.+.||..
T Consensus 72 m~lMSPpCQ 80 (338)
T KOG0919|consen 72 MLLMSPPCQ 80 (338)
T ss_pred eEeeCCCCC
Confidence 999999975
|
|
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=80.24 E-value=9.6 Score=34.56 Aligned_cols=98 Identities=18% Similarity=0.096 Sum_probs=54.9
Q ss_pred CCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCc-chHHHH-HHHcCCCEEEEEeCC-------------------H
Q 021116 130 RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGT-GSVGIE-AISRGCSEVHFVEMD-------------------P 188 (317)
Q Consensus 130 rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGt-G~l~Ie-aas~Ga~~V~aVDin-------------------~ 188 (317)
+|....+.+.++.......+ ..+...+|+=+|||. |+-... ++..|..+++.+|.| +
T Consensus 4 ~~~~~~~~~~~~~~~g~~~q--~~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~ 81 (212)
T PRK08644 4 IPSMEEFEAMLASRHTPKLL--EKLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMP 81 (212)
T ss_pred cCcHHHHHHHHHhhcCHHHH--HHHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEeehhhCCCh
Confidence 45555555555544322110 014578899998873 443333 446788899999999 3
Q ss_pred HHHHHHHHHhHHHhCCCCceEEEEecHHHH-HHHHhhhcCCCCCccEEEE
Q 021116 189 WVVSNVLIPNLEWTGFLDVSSIHTVRVETF-LERAEQFVGKDGPFDYMSV 237 (317)
Q Consensus 189 ~al~~~ar~N~~~~gl~~~v~ii~gD~~~~-l~~~~~~~~~~~~fDlV~~ 237 (317)
++ +.++++++..+-.-+++.+...+... ...+ -..||+||.
T Consensus 82 Ka--~~a~~~l~~lnp~v~v~~~~~~i~~~~~~~~------~~~~DvVI~ 123 (212)
T PRK08644 82 KV--EALKENLLEINPFVEIEAHNEKIDEDNIEEL------FKDCDIVVE 123 (212)
T ss_pred HH--HHHHHHHHHHCCCCEEEEEeeecCHHHHHHH------HcCCCEEEE
Confidence 33 56667776655443455555443321 1111 146999984
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 317 | ||||
| 2fhp_A | 187 | Crystal Structure Of Putative Methylase From Entero | 3e-09 | ||
| 1ws6_A | 171 | The Structure Of Thermus Thermphillus Hb8 Hypotheti | 7e-09 | ||
| 3p9n_A | 189 | Rv2966c Of M. Tuberculosis Is A Rsmd-Like Methyltra | 3e-07 | ||
| 2fpo_A | 202 | Putative Methyltransferase Yhhf From Escherichia Co | 1e-06 | ||
| 2ift_A | 201 | Crystal Structure Of Putative Methylase Hi0767 From | 6e-05 | ||
| 2esr_A | 177 | Conserved Hypothetical Protein- Streptococcus Pyoge | 2e-04 |
| >pdb|2FHP|A Chain A, Crystal Structure Of Putative Methylase From Enterococcus Faecalis Length = 187 | Back alignment and structure |
|
| >pdb|1WS6|A Chain A, The Structure Of Thermus Thermphillus Hb8 Hypothetical Protein Ttha0928 Length = 171 | Back alignment and structure |
|
| >pdb|3P9N|A Chain A, Rv2966c Of M. Tuberculosis Is A Rsmd-Like Methyltransferase Length = 189 | Back alignment and structure |
|
| >pdb|2FPO|A Chain A, Putative Methyltransferase Yhhf From Escherichia Coli. Length = 202 | Back alignment and structure |
|
| >pdb|2IFT|A Chain A, Crystal Structure Of Putative Methylase Hi0767 From Haemophilus Influenzae. Nesg Target Ir102. Length = 201 | Back alignment and structure |
|
| >pdb|2ESR|A Chain A, Conserved Hypothetical Protein- Streptococcus Pyogenes Length = 177 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 Length = 187 | Back alignment and structure |
|---|
Score = 147 bits (373), Expect = 9e-44
Identities = 46/188 (24%), Positives = 88/188 (46%), Gaps = 10/188 (5%)
Query: 111 VLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVG 170
V+ G+ ++L + G + RP + VK + F+++ G LDLYSG+G +
Sbjct: 6 VISGEYGGRRLKALDGDNTRPTTDKVKESIFNMIGP------YFDGGMALDLYSGSGGLA 59
Query: 171 IEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDG 230
IEA+SRG + +E + + V+ N+ T + + + LE+ + +
Sbjct: 60 IEAVSRGMDKSICIEKNFAAL-KVIKENIAITKEPEKFEVRKMDANRALEQFYE---EKL 115
Query: 231 PFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDRRF 290
FD + + PPY + + ++ + L+ ++ IV E + +T G L K ++ +
Sbjct: 116 QFDLVLLDPPYAKQEIVSQLEKMLERQLLTNEAVIVCETDKTVKLPETIGTLKKTRETVY 175
Query: 291 GRTHLAIY 298
G T + IY
Sbjct: 176 GITQVTIY 183
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 Length = 177 | Back alignment and structure |
|---|
Score = 138 bits (350), Expect = 2e-40
Identities = 39/192 (20%), Positives = 76/192 (39%), Gaps = 20/192 (10%)
Query: 120 KLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCS 179
L + G RP + V+GA F+++ GR LDL++G+G + IEA+SRG S
Sbjct: 2 SLKTLDGKITRPTSDKVRGAIFNMIGP------YFNGGRVLDLFAGSGGLAIEAVSRGMS 55
Query: 180 EVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTP 239
VE + ++ N+ T + ++ + E ++ FD + + P
Sbjct: 56 AAVLVEKNR-KAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTG------RFDLVFLDP 108
Query: 240 PYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDRRFGRTHLAIYG 299
PY + ++ L+ + +V E + L K++ +G + + +Y
Sbjct: 109 PYAKETIVATIEALAAKNLLSEQVMVVCETDKTVLLPKEIATLGIWKEKIYGISKVTVY- 167
Query: 300 PDWAQKKRKSEK 311
+
Sbjct: 168 ------VNEGHH 173
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 Length = 202 | Back alignment and structure |
|---|
Score = 134 bits (339), Expect = 1e-38
Identities = 40/188 (21%), Positives = 79/188 (42%), Gaps = 14/188 (7%)
Query: 111 VLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVG 170
++GG+ R +KL P +RP + V+ F+ L + + LD ++G+G++G
Sbjct: 16 IIGGQWRGRKLPVPDSPGLRPTTDRVRETLFNWLAPV------IVDAQCLDCFAGSGALG 69
Query: 171 IEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDG 230
+EA+SR + +EMD V LI NL + + +FL +
Sbjct: 70 LEALSRYAAGATLIEMDRAVSQ-QLIKNLATLK-AGNARVVNSNAMSFLAQKGT------ 121
Query: 231 PFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDRRF 290
P + + V PP+ E + + + + ++ I VE + + +++
Sbjct: 122 PHNIVFVDPPFRRGLLEETINLLEDNGWLADEALIYVESEVENGLPTVPANWSLHREKVA 181
Query: 291 GRTHLAIY 298
G+ +Y
Sbjct: 182 GQVAYRLY 189
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} Length = 189 | Back alignment and structure |
|---|
Score = 130 bits (329), Expect = 4e-37
Identities = 49/190 (25%), Positives = 86/190 (45%), Gaps = 14/190 (7%)
Query: 111 VLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVG 170
++GG A +++ P RP + V+ + F+I+ + L LDLY+G+G++G
Sbjct: 5 IIGGVAGGRRIAVP-PRGTRPTTDRVRESLFNIVTARR----DLTGLAVLDLYAGSGALG 59
Query: 171 IEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDG 230
+EA+SRG + V FVE D + V+ N+E G L +++ V + G
Sbjct: 60 LEALSRGAASVLFVESDQRSAA-VIARNIEALG-LSGATLRRGAVAAVVAA-----GTTS 112
Query: 231 PFDYMSVTPPY--TAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
P D + PPY + D + ++A + + + + VVE L + R
Sbjct: 113 PVDLVLADPPYNVDSADVDAILAALGTNGWTREGTVAVVERATTCAPLTWPEGWRRWPQR 172
Query: 289 RFGRTHLAIY 298
+G T L +
Sbjct: 173 VYGDTRLELA 182
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 Length = 201 | Back alignment and structure |
|---|
Score = 123 bits (310), Expect = 3e-34
Identities = 41/188 (21%), Positives = 76/188 (40%), Gaps = 11/188 (5%)
Query: 111 VLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVG 170
++ G R +KL +RP + VK F+ L + LD ++G+GS+G
Sbjct: 15 IIAGLWRGRKLPVLNSEGLRPTGDRVKETLFNWLMP------YIHQSECLDGFAGSGSLG 68
Query: 171 IEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDG 230
EA+SR +V F+E+D V + L NL+ + + +
Sbjct: 69 FEALSRQAKKVTFLELDKTVAN-QLKKNLQTLK-CSSEQAEVINQSSL--DFLKQPQNQP 124
Query: 231 PFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDRRF 290
FD + + PP+ E ++ + ++ + ++ I VE L T +K++
Sbjct: 125 HFDVVFLDPPFHFNLAEQAISLLCENNWLKPNALIYVETEKDKP-LITPENWTLLKEKTT 183
Query: 291 GRTHLAIY 298
G +Y
Sbjct: 184 GIVSYRLY 191
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 Length = 171 | Back alignment and structure |
|---|
Score = 121 bits (305), Expect = 7e-34
Identities = 58/188 (30%), Positives = 84/188 (44%), Gaps = 22/188 (11%)
Query: 111 VLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVG 170
+LGGKAR L P RP ++ A FD L+ R GR+LD ++G+G+VG
Sbjct: 4 ILGGKARGVALKVPAS--ARPSPVRLRKALFDYLRLRY-----PRRGRFLDPFAGSGAVG 56
Query: 171 IEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDG 230
+EA S G V VE DP V +L N+ TG + + VE FL A+ +
Sbjct: 57 LEAASEGWEAV-LVEKDPEAVR-LLKENVRRTGLGA--RVVALPVEVFLPEAK---AQGE 109
Query: 231 PFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDRRF 290
F + PPY A+D L ++ S LV V+++P L + R +
Sbjct: 110 RFTVAFMAPPY-AMDLAALFGELLASGLVEAGGLYVLQHPKDLY-------LPLGERRVY 161
Query: 291 GRTHLAIY 298
G L +
Sbjct: 162 GENALTLV 169
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 Length = 207 | Back alignment and structure |
|---|
Score = 56.2 bits (135), Expect = 1e-09
Identities = 28/147 (19%), Positives = 47/147 (31%), Gaps = 18/147 (12%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
L + K + K R + + DL +GTG
Sbjct: 8 LAIALSKLKGFKNPKVWLEQYRTPGNAASELLWLAYSLG-----DIEGKVVADLGAGTGV 62
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ A+ G EV VE+D V +VLI NL + + F+ +F
Sbjct: 63 LSYGALLLGAKEVICVEVDKEAV-DVLIENLG---------EFKGKFKVFIGDVSEF--- 109
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISK 255
+ D + + PP+ + + K
Sbjct: 110 NSRVDIVIMNPPFGSQRKHADRPFLLK 136
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 Length = 396 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 4e-05
Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 4/83 (4%)
Query: 158 RWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217
R LD+++ TG I A G EV ++ P + N + G D + +
Sbjct: 220 RVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIE-TAKENAKLNGVED--RMKFIVGSA 276
Query: 218 FLERAEQFVGKDGPFDYMSVTPP 240
F E E+ K FD + + PP
Sbjct: 277 F-EEMEKLQKKGEKFDIVVLDPP 298
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} Length = 259 | Back alignment and structure |
|---|
Score = 39.8 bits (93), Expect = 6e-04
Identities = 20/118 (16%), Positives = 40/118 (33%), Gaps = 27/118 (22%)
Query: 141 FDILQSAGG-------------CPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMD 187
I+QS +R G+ +DL SG G + + +R +++ VE+
Sbjct: 22 LRIIQSPSVFSFSIDAVLLAKFSYLPIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQ 81
Query: 188 PWVVS----NVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPY 241
+ +V LE + + + + + D ++ PPY
Sbjct: 82 ERLADMAKRSVAYNQLE----------DQIEIIEYDLKKITDLIPKERADIVTCNPPY 129
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 317 | |||
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.97 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.96 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.96 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.96 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.93 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.92 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.74 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 99.72 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.71 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.7 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 99.69 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 99.68 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 99.68 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.68 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 99.67 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.67 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.67 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.66 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 99.64 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.63 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.63 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.63 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 99.63 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 99.62 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.62 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.62 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.61 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.61 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 99.61 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.61 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 99.6 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 99.6 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 99.6 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.6 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.6 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.59 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.59 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 99.59 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 99.59 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.57 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 99.57 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.57 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.57 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 99.55 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.55 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 99.55 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.54 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.54 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.54 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.54 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.54 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.54 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.53 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.53 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 99.53 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.52 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.52 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 99.52 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 99.52 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.52 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 99.51 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.51 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.51 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.51 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.51 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.49 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.49 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.49 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 99.49 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.49 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 99.48 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.48 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 99.48 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.48 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.48 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.47 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 99.47 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.46 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.46 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 99.46 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.46 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.46 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 99.46 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 99.45 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 99.44 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.44 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 99.44 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.44 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.44 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.44 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.43 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.43 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.43 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.43 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.43 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 99.43 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.43 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.43 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.43 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.42 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.42 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.42 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.42 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.42 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.41 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.41 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 99.4 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.4 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.4 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 99.4 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.4 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.4 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.4 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.4 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.39 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 99.39 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.38 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.38 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 99.38 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.38 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.37 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 99.36 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 99.36 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.36 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.35 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.35 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 99.35 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 99.34 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.34 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.34 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.34 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.34 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.33 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 99.33 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.33 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 99.32 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.32 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.32 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.32 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.32 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.32 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.32 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.31 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 99.31 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 99.31 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.31 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.31 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.31 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.31 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.31 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.3 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.3 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.3 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 99.3 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.3 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.3 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.3 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.3 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.3 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.3 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.3 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.29 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.29 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.29 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.29 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 99.29 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.28 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.28 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.28 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.28 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 99.28 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.27 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.27 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.27 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 99.27 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.26 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.26 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 99.26 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.25 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.25 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.25 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.25 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 99.25 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.24 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.24 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.24 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.23 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 99.22 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.22 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.22 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.22 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.21 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.21 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.21 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.21 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.21 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.21 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.2 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.2 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.2 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.2 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.19 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 99.19 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.19 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.19 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.18 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 99.18 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 99.17 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.17 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.17 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.16 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.15 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.15 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.15 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.15 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.14 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.14 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.13 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.13 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.12 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.12 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.11 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.1 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 99.09 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 99.09 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 99.09 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 99.07 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 99.06 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 99.06 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.05 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.05 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.04 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.03 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 99.02 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 99.01 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.0 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.0 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 98.99 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 98.99 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 98.99 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 98.98 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 98.98 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 98.98 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 98.96 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 98.93 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 98.92 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 98.92 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 98.91 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 98.91 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 98.91 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 98.91 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 98.91 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 98.9 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 98.89 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 98.89 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 98.88 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 98.87 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 98.87 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 98.86 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 98.85 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 98.81 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 98.79 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 98.78 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 98.76 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 98.75 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 98.73 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 98.71 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 98.71 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 98.7 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 98.65 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 98.64 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 98.58 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 98.55 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 98.46 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.44 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 98.4 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 98.4 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 98.38 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 98.37 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 98.36 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 98.35 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 98.34 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 98.34 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 98.31 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 98.3 | |
| 2c7p_A | 327 | Modification methylase HHAI; DNA methyltransferase | 98.3 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 98.3 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 98.25 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 98.23 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 98.22 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 98.2 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 98.17 | |
| 2qrv_A | 295 | DNA (cytosine-5)-methyltransferase 3A; DNA methylt | 97.83 | |
| 3ubt_Y | 331 | Modification methylase HAEIII; protein-DNA complex | 97.7 | |
| 3me5_A | 482 | Cytosine-specific methyltransferase; structural ge | 97.65 | |
| 4h0n_A | 333 | DNMT2; SAH binding, transferase; HET: SAH; 2.71A { | 97.62 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 97.62 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 97.6 | |
| 3qv2_A | 327 | 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H | 97.56 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 97.51 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 97.47 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 97.47 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 97.39 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 97.35 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 97.34 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 97.34 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 97.33 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 97.05 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 96.93 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 96.9 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 96.9 | |
| 4ft4_B | 784 | DNA (cytosine-5)-methyltransferase 1; chromodomain | 96.67 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 96.65 | |
| 3swr_A | 1002 | DNA (cytosine-5)-methyltransferase 1; epigenetics, | 96.57 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 96.44 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 96.38 | |
| 3av4_A | 1330 | DNA (cytosine-5)-methyltransferase 1; CXXC-type zi | 96.28 | |
| 4dkj_A | 403 | Cytosine-specific methyltransferase; CG-specificit | 95.94 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 95.84 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 95.36 | |
| 3tos_A | 257 | CALS11; methyltransferase, calicheamicin, structur | 95.25 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 95.13 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 94.96 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 94.49 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 94.42 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 94.13 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 93.89 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 93.79 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 93.63 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 93.51 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 93.35 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 92.68 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 92.65 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 92.54 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 92.22 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 92.09 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 92.06 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 91.87 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 91.84 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 91.83 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 91.37 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 91.37 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 91.36 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 91.31 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 91.21 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 90.99 | |
| 4eez_A | 348 | Alcohol dehydrogenase 1; site-saturation mutagenes | 90.83 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 90.83 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 90.77 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 90.64 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 90.4 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 89.73 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 89.33 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 89.15 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 88.96 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 88.9 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 88.81 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 88.46 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 88.46 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 88.32 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 88.15 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 88.06 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 87.76 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 87.74 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 87.48 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 87.44 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 87.33 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 87.24 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 87.14 | |
| 2g1p_A | 278 | DNA adenine methylase; DAM methylation, GATC recog | 86.82 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 85.1 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 84.55 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 84.44 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 83.96 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 83.8 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 83.78 | |
| 2dpm_A | 284 | M.dpnii 1, protein (adenine-specific methyltransfe | 82.18 | |
| 3t4x_A | 267 | Oxidoreductase, short chain dehydrogenase/reducta; | 81.99 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 81.4 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 81.38 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 81.27 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 81.08 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 80.78 | |
| 3nyw_A | 250 | Putative oxidoreductase; fatty acid synthesis,3-ox | 80.73 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 80.61 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 80.54 | |
| 3i42_A | 127 | Response regulator receiver domain protein (CHEY- | 80.33 | |
| 3lf2_A | 265 | Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross | 80.27 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 80.25 |
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.6e-30 Score=221.59 Aligned_cols=185 Identities=26% Similarity=0.443 Sum_probs=157.4
Q ss_pred ceEEEEeeeecceEEecCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeC
Q 021116 107 RLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEM 186 (317)
Q Consensus 107 ~il~ii~G~~~G~~l~~p~~~~~rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDi 186 (317)
+|+||++|+|+|+++.++. ..+||+++.+++.+++++.... ..++.+|||+|||+|.++++++++|+.+|+++|+
T Consensus 1 ~m~rii~g~~~g~~l~~~~-~~~rp~~~~~~~~l~~~l~~~~----~~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~ 75 (189)
T 3p9n_A 1 SMTRIIGGVAGGRRIAVPP-RGTRPTTDRVRESLFNIVTARR----DLTGLAVLDLYAGSGALGLEALSRGAASVLFVES 75 (189)
T ss_dssp CEEECCSSTTTTCEEECCS-CCC---CHHHHHHHHHHHHHHS----CCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEEC
T ss_pred CceEEEeeccCCcEecCCC-CCCccCcHHHHHHHHHHHHhcc----CCCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEEC
Confidence 4789999999999999998 7789999999999999997631 1367899999999999999988888889999999
Q ss_pred CHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCC--ccHHHHHHHHHHcCCcCCCeE
Q 021116 187 DPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTA--VDYEVLMAQISKSALVGKDSF 264 (317)
Q Consensus 187 n~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~--~~~~~~l~~L~~~~lLkpgG~ 264 (317)
|+.++ +.|++|++.+++ ++++++++|+.++.... ..++||+|++||||.. ..+.+.++.+...++|+|||+
T Consensus 76 ~~~~~-~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~-----~~~~fD~i~~~~p~~~~~~~~~~~l~~~~~~~~L~pgG~ 148 (189)
T 3p9n_A 76 DQRSA-AVIARNIEALGL-SGATLRRGAVAAVVAAG-----TTSPVDLVLADPPYNVDSADVDAILAALGTNGWTREGTV 148 (189)
T ss_dssp CHHHH-HHHHHHHHHHTC-SCEEEEESCHHHHHHHC-----CSSCCSEEEECCCTTSCHHHHHHHHHHHHHSSSCCTTCE
T ss_pred CHHHH-HHHHHHHHHcCC-CceEEEEccHHHHHhhc-----cCCCccEEEECCCCCcchhhHHHHHHHHHhcCccCCCeE
Confidence 99999 999999999998 56999999999886543 2478999999999986 356777777766669999999
Q ss_pred EEEEeCCCCCccccCCCeEEEEEeecCceEEEEEeechh
Q 021116 265 IVVEYPLRTDMLDTCGCLVKIKDRRFGRTHLAIYGPDWA 303 (317)
Q Consensus 265 ivv~~~~~~~l~~~~~~~~~~~~r~yG~~~l~~~~p~~~ 303 (317)
+++++.....+.....+|...+++.||.+.+.||++.++
T Consensus 149 l~~~~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~~~~ 187 (189)
T 3p9n_A 149 AVVERATTCAPLTWPEGWRRWPQRVYGDTRLELAERLFA 187 (189)
T ss_dssp EEEEEETTSCCCCCCTTEEECCCEEETTEEEEEEEEC--
T ss_pred EEEEecCCCCCccCCCceEEEEEcccCcEEEEEeccccc
Confidence 999999887777777889999999999999999999765
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.7e-28 Score=215.83 Aligned_cols=182 Identities=23% Similarity=0.387 Sum_probs=153.0
Q ss_pred ceEEEEeeeecceEEecCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeC
Q 021116 107 RLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEM 186 (317)
Q Consensus 107 ~il~ii~G~~~G~~l~~p~~~~~rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDi 186 (317)
..+++++|+|+|+++.++.+..+||+++.+++.+++++... .++.+|||+|||+|.++++++++|+.+|+++|+
T Consensus 12 ~~~~ii~g~~~g~~l~~~~~~~~rp~~~~~~~~l~~~l~~~------~~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~ 85 (202)
T 2fpo_A 12 GQIRIIGGQWRGRKLPVPDSPGLRPTTDRVRETLFNWLAPV------IVDAQCLDCFAGSGALGLEALSRYAAGATLIEM 85 (202)
T ss_dssp CEEECCSGGGTTCEEECCCC------CHHHHHHHHHHHHHH------HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECS
T ss_pred ceEEEEEEEEcCcEecCCCCCCCCCCHHHHHHHHHHHHHhh------cCCCeEEEeCCCcCHHHHHHHhcCCCEEEEEEC
Confidence 35789999999999999998889999999999999998752 257899999999999999988888779999999
Q ss_pred CHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEE
Q 021116 187 DPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIV 266 (317)
Q Consensus 187 n~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~iv 266 (317)
|+.++ +.|++|++.+++ ++++++++|+.+++.. ..++||+|++||||......+.++.+.+.++|+|||+++
T Consensus 86 s~~~l-~~a~~~~~~~~~-~~v~~~~~D~~~~~~~------~~~~fD~V~~~~p~~~~~~~~~l~~l~~~~~L~pgG~l~ 157 (202)
T 2fpo_A 86 DRAVS-QQLIKNLATLKA-GNARVVNSNAMSFLAQ------KGTPHNIVFVDPPFRRGLLEETINLLEDNGWLADEALIY 157 (202)
T ss_dssp CHHHH-HHHHHHHHHTTC-CSEEEECSCHHHHHSS------CCCCEEEEEECCSSSTTTHHHHHHHHHHTTCEEEEEEEE
T ss_pred CHHHH-HHHHHHHHHcCC-CcEEEEECCHHHHHhh------cCCCCCEEEECCCCCCCcHHHHHHHHHhcCccCCCcEEE
Confidence 99999 999999999998 5699999999886532 246899999999998777888888887667899999999
Q ss_pred EEeCCCCCccccCCCeEEEEEeecCceEEEEEeech
Q 021116 267 VEYPLRTDMLDTCGCLVKIKDRRFGRTHLAIYGPDW 302 (317)
Q Consensus 267 v~~~~~~~l~~~~~~~~~~~~r~yG~~~l~~~~p~~ 302 (317)
+++.....+.....+|.+.+++.||.+.+.||++.-
T Consensus 158 i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 193 (202)
T 2fpo_A 158 VESEVENGLPTVPANWSLHREKVAGQVAYRLYQREA 193 (202)
T ss_dssp EEEEGGGCSCCCCTTEEEEEEEEETTEEEEEEEECC
T ss_pred EEECCCccccccCCcceEEeeeccCCEEEEEEEECC
Confidence 999877776655678999999999999999997643
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.3e-28 Score=216.10 Aligned_cols=181 Identities=25% Similarity=0.355 Sum_probs=148.1
Q ss_pred eEEEEeeeecceEEecCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCC
Q 021116 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMD 187 (317)
Q Consensus 108 il~ii~G~~~G~~l~~p~~~~~rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin 187 (317)
.+++++|+|+|+++.++.+..+||+++.+++.+++++... .++.+|||+|||+|.++++++++|+.+|+++|+|
T Consensus 12 ~~~ii~G~~~g~~l~~~~~~~~rp~~~~~~~~l~~~l~~~------~~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s 85 (201)
T 2ift_A 12 EVRIIAGLWRGRKLPVLNSEGLRPTGDRVKETLFNWLMPY------IHQSECLDGFAGSGSLGFEALSRQAKKVTFLELD 85 (201)
T ss_dssp EEECCSSTTTTCEEECC---------CHHHHHHHHHHHHH------HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSC
T ss_pred ceEEEEeeeCCcEecCCCCCCcCcCHHHHHHHHHHHHHHh------cCCCeEEEcCCccCHHHHHHHHccCCEEEEEECC
Confidence 3688899999999999988888999999999999998752 2578999999999999999888887789999999
Q ss_pred HHHHHHHHHHhHHHhCCC-CceEEEEecHHHHHHHHhhhcCCCCC-ccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEE
Q 021116 188 PWVVSNVLIPNLEWTGFL-DVSSIHTVRVETFLERAEQFVGKDGP-FDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFI 265 (317)
Q Consensus 188 ~~al~~~ar~N~~~~gl~-~~v~ii~gD~~~~l~~~~~~~~~~~~-fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~i 265 (317)
+.++ +.|++|++.+++. ++++++++|+.+++... ..++ ||+|++||||......+.++.+.+.++|+|||++
T Consensus 86 ~~~l-~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~-----~~~~~fD~I~~~~~~~~~~~~~~l~~~~~~~~LkpgG~l 159 (201)
T 2ift_A 86 KTVA-NQLKKNLQTLKCSSEQAEVINQSSLDFLKQP-----QNQPHFDVVFLDPPFHFNLAEQAISLLCENNWLKPNALI 159 (201)
T ss_dssp HHHH-HHHHHHHHHTTCCTTTEEEECSCHHHHTTSC-----CSSCCEEEEEECCCSSSCHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHH-HHHHHHHHHhCCCccceEEEECCHHHHHHhh-----ccCCCCCEEEECCCCCCccHHHHHHHHHhcCccCCCcEE
Confidence 9999 9999999999984 56999999998764211 1367 9999999998877778888888656789999999
Q ss_pred EEEeCCCCCccccCCCeEEEEEeecCceEEEEEeec
Q 021116 266 VVEYPLRTDMLDTCGCLVKIKDRRFGRTHLAIYGPD 301 (317)
Q Consensus 266 vv~~~~~~~l~~~~~~~~~~~~r~yG~~~l~~~~p~ 301 (317)
++++.... +.+...+|.++++++||.+.+.+|.+.
T Consensus 160 ~i~~~~~~-~~~~~~~~~~~~~~~yG~~~~~~~~~~ 194 (201)
T 2ift_A 160 YVETEKDK-PLITPENWTLLKEKTTGIVSYRLYQNL 194 (201)
T ss_dssp EEEEESSS-CCCCCTTEEEEEEEEETTEEEEEEEEC
T ss_pred EEEECCCC-CccccchhHHHHHHhcCCEEEEEEecc
Confidence 99988776 555667899999999999999999875
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.96 E-value=5.9e-28 Score=207.35 Aligned_cols=185 Identities=25% Similarity=0.417 Sum_probs=158.9
Q ss_pred ceEEEEeeeecceEEecCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeC
Q 021116 107 RLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEM 186 (317)
Q Consensus 107 ~il~ii~G~~~G~~l~~p~~~~~rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDi 186 (317)
++++|++|+|+|+++..+.+..+||+++.+.+.+++.+... .++.+|||+|||+|.+++++++.+..+|+++|+
T Consensus 2 ~~~~i~~g~~~~~~~~~~~~~~~rp~~~~~~~~~~~~l~~~------~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~ 75 (187)
T 2fhp_A 2 NAMRVISGEYGGRRLKALDGDNTRPTTDKVKESIFNMIGPY------FDGGMALDLYSGSGGLAIEAVSRGMDKSICIEK 75 (187)
T ss_dssp -CCBCCSSTTTTCBCCCCCCCSSCCCCHHHHHHHHHHHCSC------CSSCEEEETTCTTCHHHHHHHHTTCSEEEEEES
T ss_pred CceEEeeccccCccccCCCCCCcCcCHHHHHHHHHHHHHhh------cCCCCEEEeCCccCHHHHHHHHcCCCEEEEEEC
Confidence 46789999999999999998889999999999999998542 367899999999999999988888778999999
Q ss_pred CHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEE
Q 021116 187 DPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIV 266 (317)
Q Consensus 187 n~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~iv 266 (317)
++.++ +.|++|++.+++.++++++++|+.+++.... ...++||+|++||||......+.++.+...++|+|||+++
T Consensus 76 ~~~~~-~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~---~~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~L~~gG~l~ 151 (187)
T 2fhp_A 76 NFAAL-KVIKENIAITKEPEKFEVRKMDANRALEQFY---EEKLQFDLVLLDPPYAKQEIVSQLEKMLERQLLTNEAVIV 151 (187)
T ss_dssp CHHHH-HHHHHHHHHHTCGGGEEEEESCHHHHHHHHH---HTTCCEEEEEECCCGGGCCHHHHHHHHHHTTCEEEEEEEE
T ss_pred CHHHH-HHHHHHHHHhCCCcceEEEECcHHHHHHHHH---hcCCCCCEEEECCCCCchhHHHHHHHHHHhcccCCCCEEE
Confidence 99999 9999999999987779999999988764321 1246899999999987667777888776668999999999
Q ss_pred EEeCCCCCccccCCCeEEEEEeecCceEEEEEeec
Q 021116 267 VEYPLRTDMLDTCGCLVKIKDRRFGRTHLAIYGPD 301 (317)
Q Consensus 267 v~~~~~~~l~~~~~~~~~~~~r~yG~~~l~~~~p~ 301 (317)
++++....+.....+|...+++.||.+.+.+|++.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 186 (187)
T 2fhp_A 152 CETDKTVKLPETIGTLKKTRETVYGITQVTIYRQE 186 (187)
T ss_dssp EEEETTCCCCSEETTEEEEEEEEETTEEEEEEEC-
T ss_pred EEeCCcccccccccchhhhhhhccCceEEEEEEec
Confidence 99988877766567899999999999999999863
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.93 E-value=3.1e-25 Score=189.97 Aligned_cols=170 Identities=24% Similarity=0.387 Sum_probs=132.1
Q ss_pred EEecCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhH
Q 021116 120 KLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNL 199 (317)
Q Consensus 120 ~l~~p~~~~~rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~ 199 (317)
+|.+|++..+||+++.+++.+++.+... .++.+|||+|||+|.+++.+++++..+|+++|+|+.++ +.|++|+
T Consensus 2 ~l~~p~~~~~rp~~~~~~~~~~~~l~~~------~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~-~~a~~~~ 74 (177)
T 2esr_A 2 SLKTLDGKITRPTSDKVRGAIFNMIGPY------FNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQ-AIIQDNI 74 (177)
T ss_dssp ----------------CHHHHHHHHCSC------CCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHH-HHHHHHH
T ss_pred cccCCCCCCCCcCHHHHHHHHHHHHHhh------cCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHH-HHHHHHH
Confidence 4667888889999999999999998632 46789999999999999999888777899999999999 9999999
Q ss_pred HHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCCCCCccccC
Q 021116 200 EWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTC 279 (317)
Q Consensus 200 ~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~~~l~~~~ 279 (317)
+.+++.++++++.+|+.+++... .+.||+|++||||.....++.++.+.+.++|+|||++++++.....+.+..
T Consensus 75 ~~~~~~~~~~~~~~d~~~~~~~~------~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~~~~~~~ 148 (177)
T 2esr_A 75 IMTKAENRFTLLKMEAERAIDCL------TGRFDLVFLDPPYAKETIVATIEALAAKNLLSEQVMVVCETDKTVLLPKEI 148 (177)
T ss_dssp HTTTCGGGEEEECSCHHHHHHHB------CSCEEEEEECCSSHHHHHHHHHHHHHHTTCEEEEEEEEEEEETTCCCCSEE
T ss_pred HHcCCCCceEEEECcHHHhHHhh------cCCCCEEEECCCCCcchHHHHHHHHHhCCCcCCCcEEEEEECCcccccccc
Confidence 99998777999999999876443 357999999999865566777777765579999999999999887776666
Q ss_pred CCeEEEEEeecCceEEEEEeech
Q 021116 280 GCLVKIKDRRFGRTHLAIYGPDW 302 (317)
Q Consensus 280 ~~~~~~~~r~yG~~~l~~~~p~~ 302 (317)
.+|...+++.||.+.+.++....
T Consensus 149 ~~~~~~~~~~yg~~~~~~~~~~~ 171 (177)
T 2esr_A 149 ATLGIWKEKIYGISKVTVYVNEG 171 (177)
T ss_dssp TTEEEEEEEEETTEEEEEEEETT
T ss_pred CceEEEEeeecCcEEEEEEEecc
Confidence 78999999999999999997654
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.92 E-value=2.6e-24 Score=181.68 Aligned_cols=169 Identities=33% Similarity=0.533 Sum_probs=141.8
Q ss_pred eEEEEeeeecceEEecCCCCCCCCChHHHHHHHHHHHhhcCCCCCCC-CCCeEEEECCCcchHHHHHHHcCCCEEEEEeC
Q 021116 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASL-RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEM 186 (317)
Q Consensus 108 il~ii~G~~~G~~l~~p~~~~~rpt~~~v~~alf~~L~~~~~~~~~~-~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDi 186 (317)
+++|++|+|+|+++..+.+ +||+.+.+.+.+++.+... . ++.+|||+|||+|.+++.+++.|.. |+++|+
T Consensus 1 ~~~i~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~------~~~~~~vLD~GcG~G~~~~~l~~~~~~-v~~vD~ 71 (171)
T 1ws6_A 1 VVRILGGKARGVALKVPAS--ARPSPVRLRKALFDYLRLR------YPRRGRFLDPFAGSGAVGLEAASEGWE-AVLVEK 71 (171)
T ss_dssp CEECCSGGGTTCEECCCTT--CCCCCHHHHHHHHHHHHHH------CTTCCEEEEETCSSCHHHHHHHHTTCE-EEEECC
T ss_pred CceEeecccCCeEecCCCC--CCCCHHHHHHHHHHHHHhh------ccCCCeEEEeCCCcCHHHHHHHHCCCe-EEEEeC
Confidence 5789999999999999988 8999999999999998753 2 5789999999999999999888865 999999
Q ss_pred CHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEE
Q 021116 187 DPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIV 266 (317)
Q Consensus 187 n~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~iv 266 (317)
|+.++ +.|++|++.+++ +++++++|+.+++.... ...++||+|++||||. ...++.++.+.+.++|+|||+++
T Consensus 72 ~~~~~-~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~---~~~~~~D~i~~~~~~~-~~~~~~~~~~~~~~~L~~gG~~~ 144 (171)
T 1ws6_A 72 DPEAV-RLLKENVRRTGL--GARVVALPVEVFLPEAK---AQGERFTVAFMAPPYA-MDLAALFGELLASGLVEAGGLYV 144 (171)
T ss_dssp CHHHH-HHHHHHHHHHTC--CCEEECSCHHHHHHHHH---HTTCCEEEEEECCCTT-SCTTHHHHHHHHHTCEEEEEEEE
T ss_pred CHHHH-HHHHHHHHHcCC--ceEEEeccHHHHHHhhh---ccCCceEEEEECCCCc-hhHHHHHHHHHhhcccCCCcEEE
Confidence 99999 999999999987 58999999988754432 1124799999999997 66666777665346899999999
Q ss_pred EEeCCCCCccccCCCeEEEEEeecCceEEEEEe
Q 021116 267 VEYPLRTDMLDTCGCLVKIKDRRFGRTHLAIYG 299 (317)
Q Consensus 267 v~~~~~~~l~~~~~~~~~~~~r~yG~~~l~~~~ 299 (317)
+++.....+. ..+++.||.+.+.||+
T Consensus 145 ~~~~~~~~~~-------~~~~~~y~~~~~~~~~ 170 (171)
T 1ws6_A 145 LQHPKDLYLP-------LGERRVYGENALTLVE 170 (171)
T ss_dssp EEEETTSCCT-------TSEEEEETTEEEEEEE
T ss_pred EEeCCccCCc-------hhhhhccCcEEEEEEE
Confidence 9998766543 3467899999999986
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=4.9e-17 Score=151.64 Aligned_cols=141 Identities=16% Similarity=0.212 Sum_probs=113.0
Q ss_pred eecceEEecCCCC-CCCCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHH
Q 021116 115 KARRKKLLSPKGM-DVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSN 193 (317)
Q Consensus 115 ~~~G~~l~~p~~~-~~rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~ 193 (317)
.|.|..+.+..+. ..||.++.+.+.+++.+... ++.+|||+|||+|.+++.++..+..+|+++|+|+.++ +
T Consensus 89 ~f~~~~~~v~~~~lipr~~te~lv~~~l~~~~~~-------~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al-~ 160 (284)
T 1nv8_A 89 EFMGLSFLVEEGVFVPRPETEELVELALELIRKY-------GIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAV-E 160 (284)
T ss_dssp EETTEEEECCTTSCCCCTTHHHHHHHHHHHHHHH-------TCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHH-H
T ss_pred EECCeEEEeCCCceecChhHHHHHHHHHHHhccc-------CCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHH-H
Confidence 5778888876655 57999999999998887642 4679999999999999988776445899999999999 9
Q ss_pred HHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCc---cEEEECCCCCCcc--------HH------------HHH
Q 021116 194 VLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF---DYMSVTPPYTAVD--------YE------------VLM 250 (317)
Q Consensus 194 ~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~f---DlV~~dPPy~~~~--------~~------------~~l 250 (317)
.|++|++.+|+.++++++++|+.+.+. ++| |+|++||||.... ++ ..+
T Consensus 161 ~A~~n~~~~~l~~~v~~~~~D~~~~~~---------~~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~ 231 (284)
T 1nv8_A 161 IARKNAERHGVSDRFFVRKGEFLEPFK---------EKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFY 231 (284)
T ss_dssp HHHHHHHHTTCTTSEEEEESSTTGGGG---------GGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHH
T ss_pred HHHHHHHHcCCCCceEEEECcchhhcc---------cccCCCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHH
Confidence 999999999998889999999987531 468 9999999996421 11 344
Q ss_pred HHHHHcCCcCCCeEEEEEeCCCC
Q 021116 251 AQISKSALVGKDSFIVVEYPLRT 273 (317)
Q Consensus 251 ~~L~~~~lLkpgG~ivv~~~~~~ 273 (317)
+.+.. +.|+|||++++++...+
T Consensus 232 ~~i~~-~~l~pgG~l~~e~~~~q 253 (284)
T 1nv8_A 232 REFFG-RYDTSGKIVLMEIGEDQ 253 (284)
T ss_dssp HHHHH-HCCCTTCEEEEECCTTC
T ss_pred HHHHH-hcCCCCCEEEEEECchH
Confidence 44440 37899999999988654
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=7.5e-17 Score=156.52 Aligned_cols=114 Identities=16% Similarity=0.204 Sum_probs=92.2
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCC-ceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLD-VSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~-~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
++.+|||+|||||.+++.++++|+.+|++||+++.++ +.|++|++.||+.+ +++++++|+.+++.... ....+||
T Consensus 212 ~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al-~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~---~~~~~fD 287 (385)
T 2b78_A 212 AGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSR-ALSLAHFEANHLDMANHQLVVMDVFDYFKYAR---RHHLTYD 287 (385)
T ss_dssp BTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHH-HHHHHHHHHTTCCCTTEEEEESCHHHHHHHHH---HTTCCEE
T ss_pred CCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHH-HHHHHHHHHcCCCccceEEEECCHHHHHHHHH---HhCCCcc
Confidence 4789999999999999999988888999999999999 99999999999975 79999999999876432 1235899
Q ss_pred EEEECCCCCC---c---c----HHHHHHHHHHcCCcCCCeEEEEEeCCCCC
Q 021116 234 YMSVTPPYTA---V---D----YEVLMAQISKSALVGKDSFIVVEYPLRTD 274 (317)
Q Consensus 234 lV~~dPPy~~---~---~----~~~~l~~L~~~~lLkpgG~ivv~~~~~~~ 274 (317)
+|++|||+.. . . +.+++..+. ++|+|||++++++...+.
T Consensus 288 ~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~--~~L~pgG~l~~~~~~~~~ 336 (385)
T 2b78_A 288 IIIIDPPSFARNKKEVFSVSKDYHKLIRQGL--EILSENGLIIASTNAANM 336 (385)
T ss_dssp EEEECCCCC-----CCCCHHHHHHHHHHHHH--HTEEEEEEEEEEECCTTS
T ss_pred EEEECCCCCCCChhhHHHHHHHHHHHHHHHH--HhcCCCcEEEEEeCCCcC
Confidence 9999999842 1 1 233333333 589999999999886643
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.71 E-value=3e-16 Score=149.68 Aligned_cols=132 Identities=17% Similarity=0.198 Sum_probs=100.6
Q ss_pred CCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCC-ce
Q 021116 130 RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLD-VS 208 (317)
Q Consensus 130 rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~-~v 208 (317)
.|.....+..+.+.+... .++.+|||+|||+|.+++.+++.|+ +|++||+|+.++ +.|++|++.+++.+ ++
T Consensus 134 f~dq~~~~~~l~~~~~~~------~~~~~VLDlgcGtG~~sl~la~~ga-~V~~VD~s~~al-~~a~~n~~~~gl~~~~v 205 (332)
T 2igt_A 134 FPEQIVHWEWLKNAVETA------DRPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAI-GWAKENQVLAGLEQAPI 205 (332)
T ss_dssp CGGGHHHHHHHHHHHHHS------SSCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHH-HHHHHHHHHHTCTTSCE
T ss_pred chHHHHHHHHHHHHHHhc------CCCCcEEEcccccCHHHHHHHHcCC-EEEEEECCHHHH-HHHHHHHHHcCCCccce
Confidence 455566666666665421 2467999999999999999999887 899999999999 99999999999976 59
Q ss_pred EEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCC-c----------cHHHHHHHHHHcCCcCCCeEEEEEeCCCCC
Q 021116 209 SIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTA-V----------DYEVLMAQISKSALVGKDSFIVVEYPLRTD 274 (317)
Q Consensus 209 ~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~-~----------~~~~~l~~L~~~~lLkpgG~ivv~~~~~~~ 274 (317)
+++++|+.+++.... ....+||+|++||||.. . .+.++++.+. ++|+|||++++++.....
T Consensus 206 ~~i~~D~~~~l~~~~---~~~~~fD~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~--~~LkpgG~lli~~~~~~~ 277 (332)
T 2igt_A 206 RWICEDAMKFIQREE---RRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICR--EILSPKALGLVLTAYSIR 277 (332)
T ss_dssp EEECSCHHHHHHHHH---HHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHH--HTBCTTCCEEEEEECCTT
T ss_pred EEEECcHHHHHHHHH---hcCCCceEEEECCccccCCchHHHHHHHHHHHHHHHHHH--HhcCcCcEEEEEECCCCC
Confidence 999999999875421 01368999999999632 1 1344454443 589999998887765543
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.70 E-value=4.5e-17 Score=148.56 Aligned_cols=137 Identities=15% Similarity=0.181 Sum_probs=101.8
Q ss_pred ceEEecCCCCCCCCChHHHHHHHHHHHhhcCCCCCCC-CCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHH
Q 021116 118 RKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASL-RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLI 196 (317)
Q Consensus 118 G~~l~~p~~~~~rpt~~~v~~alf~~L~~~~~~~~~~-~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar 196 (317)
+.++..+.+ .+++.++.+.-+ .++.. . ++.+|||+|||+|.+++.++.++..+|+++|+++.++ +.|+
T Consensus 21 ~~~i~q~~~-~~~~~~d~~ll~--~~~~~-------~~~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~-~~a~ 89 (259)
T 3lpm_A 21 NLRIIQSPS-VFSFSIDAVLLA--KFSYL-------PIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLA-DMAK 89 (259)
T ss_dssp TEEEEEBTT-TBCCCHHHHHHH--HHCCC-------CSSCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHH-HHHH
T ss_pred CEEEEeCCC-CccCcHHHHHHH--HHhcC-------CCCCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHH-HHHH
Confidence 445555554 447787754322 22221 3 5789999999999999998888766899999999999 9999
Q ss_pred HhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCc---------------------cHHHHHHHHHH
Q 021116 197 PNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAV---------------------DYEVLMAQISK 255 (317)
Q Consensus 197 ~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~---------------------~~~~~l~~L~~ 255 (317)
+|++.+++.++++++++|+.++...+ ..++||+|++||||... .++..++.+.
T Consensus 90 ~n~~~~~~~~~v~~~~~D~~~~~~~~-----~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~- 163 (259)
T 3lpm_A 90 RSVAYNQLEDQIEIIEYDLKKITDLI-----PKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAA- 163 (259)
T ss_dssp HHHHHTTCTTTEEEECSCGGGGGGTS-----CTTCEEEEEECCCC-----------------------HHHHHHHHHHH-
T ss_pred HHHHHCCCcccEEEEECcHHHhhhhh-----ccCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHH-
Confidence 99999999888999999998875321 24789999999999542 1233444443
Q ss_pred cCCcCCCeEEEEEeCCC
Q 021116 256 SALVGKDSFIVVEYPLR 272 (317)
Q Consensus 256 ~~lLkpgG~ivv~~~~~ 272 (317)
++|+|||++++.++..
T Consensus 164 -~~LkpgG~l~~~~~~~ 179 (259)
T 3lpm_A 164 -SLLKQGGKANFVHRPE 179 (259)
T ss_dssp -HHEEEEEEEEEEECTT
T ss_pred -HHccCCcEEEEEEcHH
Confidence 5899999999987643
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=3.8e-17 Score=159.55 Aligned_cols=124 Identities=16% Similarity=0.247 Sum_probs=96.0
Q ss_pred CCCeEEEECCCcchHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHhHHHhCCCCc-eEEEEecHHHHHH-HHhhhcCCCC
Q 021116 155 RPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDV-SSIHTVRVETFLE-RAEQFVGKDG 230 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~--Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~-v~ii~gD~~~~l~-~~~~~~~~~~ 230 (317)
++.+|||+|||||.++++++++ |+.+|+++|+|+.++ +.+++|++.||++++ ++++++|+.+++. .. .+
T Consensus 52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av-~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~------~~ 124 (392)
T 3axs_A 52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAI-EIMKENFKLNNIPEDRYEIHGMEANFFLRKEW------GF 124 (392)
T ss_dssp SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHH-HHHHHHHHHTTCCGGGEEEECSCHHHHHHSCC------SS
T ss_pred CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHH-HHHHHHHHHhCCCCceEEEEeCCHHHHHHHhh------CC
Confidence 4789999999999999999884 667899999999999 999999999999877 9999999999875 43 35
Q ss_pred CccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCCCCCccccCCCeEEEEEeecCce
Q 021116 231 PFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDRRFGRT 293 (317)
Q Consensus 231 ~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~~~l~~~~~~~~~~~~r~yG~~ 293 (317)
.||+|++|| |. ...+.++... +.|++||++++++. .+....+.+.....++||.+
T Consensus 125 ~fD~V~lDP-~g--~~~~~l~~a~--~~Lk~gGll~~t~t---~~~~l~g~~~~~~~rkYg~~ 179 (392)
T 3axs_A 125 GFDYVDLDP-FG--TPVPFIESVA--LSMKRGGILSLTAT---DTAPLSGTYPKTCMRRYMAR 179 (392)
T ss_dssp CEEEEEECC-SS--CCHHHHHHHH--HHEEEEEEEEEEEC---CHHHHTTSSHHHHHHHHSSB
T ss_pred CCcEEEECC-Cc--CHHHHHHHHH--HHhCCCCEEEEEec---chhhhccccHHHHHHHhCCc
Confidence 799999998 43 2344555544 26899999999994 23222233333344667765
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.4e-16 Score=149.02 Aligned_cols=103 Identities=15% Similarity=0.216 Sum_probs=86.2
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
.+|++|||+|||+|.+++.++++|+.+|+++|+||.++ +.+++|++.||++++++++++|+.++. ..+.||
T Consensus 124 ~~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~-~~~~~N~~~N~v~~~v~~~~~D~~~~~--------~~~~~D 194 (278)
T 3k6r_A 124 KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTF-KFLVENIHLNKVEDRMSAYNMDNRDFP--------GENIAD 194 (278)
T ss_dssp CTTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHH-HHHHHHHHHTTCTTTEEEECSCTTTCC--------CCSCEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHH-HHHHHHHHHcCCCCcEEEEeCcHHHhc--------cccCCC
Confidence 35899999999999999999999988999999999999 999999999999999999999998764 246899
Q ss_pred EEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 234 YMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 234 lV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
.|++|||+.... .++... ++|++||+|.+.+.
T Consensus 195 ~Vi~~~p~~~~~---~l~~a~--~~lk~gG~ih~~~~ 226 (278)
T 3k6r_A 195 RILMGYVVRTHE---FIPKAL--SIAKDGAIIHYHNT 226 (278)
T ss_dssp EEEECCCSSGGG---GHHHHH--HHEEEEEEEEEEEE
T ss_pred EEEECCCCcHHH---HHHHHH--HHcCCCCEEEEEee
Confidence 999999875422 232222 26899999976544
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.68 E-value=6.8e-16 Score=149.77 Aligned_cols=113 Identities=19% Similarity=0.267 Sum_probs=93.3
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCC-CCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGF-LDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl-~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
++.+|||+|||+|.+++.++..|+.+|++||+|+.++ +.|++|++.||+ .++++++++|+.+++.... ....+||
T Consensus 220 ~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al-~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~---~~~~~fD 295 (396)
T 3c0k_A 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEAL-DIARQNVELNKLDLSKAEFVRDDVFKLLRTYR---DRGEKFD 295 (396)
T ss_dssp TTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHH-HHHHHHHHHTTCCGGGEEEEESCHHHHHHHHH---HTTCCEE
T ss_pred CCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHH-HHHHHHHHHcCCCccceEEEECCHHHHHHHHH---hcCCCCC
Confidence 5789999999999999999998888999999999999 999999999998 6579999999999875432 1136899
Q ss_pred EEEECCCCCC----------ccHHHHHHHHHHcCCcCCCeEEEEEeCCCC
Q 021116 234 YMSVTPPYTA----------VDYEVLMAQISKSALVGKDSFIVVEYPLRT 273 (317)
Q Consensus 234 lV~~dPPy~~----------~~~~~~l~~L~~~~lLkpgG~ivv~~~~~~ 273 (317)
+|++|||+.. ..+.+.+..+. ++|+|||++++++....
T Consensus 296 ~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~--~~LkpgG~l~~~~~~~~ 343 (396)
T 3c0k_A 296 VIVMDPPKFVENKSQLMGACRGYKDINMLAI--QLLNEGGILLTFSCSGL 343 (396)
T ss_dssp EEEECCSSTTTCSSSSSCCCTHHHHHHHHHH--HTEEEEEEEEEEECCTT
T ss_pred EEEECCCCCCCChhHHHHHHHHHHHHHHHHH--HhcCCCcEEEEEeCCCc
Confidence 9999999843 23455555544 48999999999887654
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.68 E-value=7.5e-16 Score=131.38 Aligned_cols=146 Identities=14% Similarity=0.172 Sum_probs=112.7
Q ss_pred EEEEeeeecceEEec--CCCCCCCCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeC
Q 021116 109 LQVLGGKARRKKLLS--PKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEM 186 (317)
Q Consensus 109 l~ii~G~~~G~~l~~--p~~~~~rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDi 186 (317)
++.+.+.|.|..+.. ..+.+..++.+...+.+++.+.. .++.+|||+|||+|.+++.++.. ..+|+++|+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~vLdiG~G~G~~~~~~~~~-~~~v~~~D~ 82 (194)
T 1dus_A 11 VKIVEDILRGKKLKFKTDSGVFSYGKVDKGTKILVENVVV-------DKDDDILDLGCGYGVIGIALADE-VKSTTMADI 82 (194)
T ss_dssp EEEEEEEETTEEEEEEEETTSTTTTSCCHHHHHHHHHCCC-------CTTCEEEEETCTTSHHHHHHGGG-SSEEEEEES
T ss_pred ccEEeeecCCCceEEEeCCCcCCccccchHHHHHHHHccc-------CCCCeEEEeCCCCCHHHHHHHHc-CCeEEEEEC
Confidence 456688888886654 34444444455667777777643 36789999999999999988877 458999999
Q ss_pred CHHHHHHHHHHhHHHhCCCC-ceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCc--cHHHHHHHHHHcCCcCCCe
Q 021116 187 DPWVVSNVLIPNLEWTGFLD-VSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAV--DYEVLMAQISKSALVGKDS 263 (317)
Q Consensus 187 n~~al~~~ar~N~~~~gl~~-~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~--~~~~~l~~L~~~~lLkpgG 263 (317)
++.++ +.+++|++.+++.+ +++++.+|+.+.. ..++||+|++++||... .....++.+. ++|+|||
T Consensus 83 ~~~~~-~~a~~~~~~~~~~~~~~~~~~~d~~~~~--------~~~~~D~v~~~~~~~~~~~~~~~~l~~~~--~~L~~gG 151 (194)
T 1dus_A 83 NRRAI-KLAKENIKLNNLDNYDIRVVHSDLYENV--------KDRKYNKIITNPPIRAGKEVLHRIIEEGK--ELLKDNG 151 (194)
T ss_dssp CHHHH-HHHHHHHHHTTCTTSCEEEEECSTTTTC--------TTSCEEEEEECCCSTTCHHHHHHHHHHHH--HHEEEEE
T ss_pred CHHHH-HHHHHHHHHcCCCccceEEEECchhccc--------ccCCceEEEECCCcccchhHHHHHHHHHH--HHcCCCC
Confidence 99999 99999999998865 5999999987643 13689999999998752 3455666654 4899999
Q ss_pred EEEEEeCCCC
Q 021116 264 FIVVEYPLRT 273 (317)
Q Consensus 264 ~ivv~~~~~~ 273 (317)
++++......
T Consensus 152 ~l~~~~~~~~ 161 (194)
T 1dus_A 152 EIWVVIQTKQ 161 (194)
T ss_dssp EEEEEEESTH
T ss_pred EEEEEECCCC
Confidence 9999887653
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=4.9e-16 Score=150.89 Aligned_cols=125 Identities=16% Similarity=0.177 Sum_probs=101.6
Q ss_pred CCCCCCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHhHHHh--
Q 021116 126 GMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWT-- 202 (317)
Q Consensus 126 ~~~~rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~-Ga~~V~aVDin~~al~~~ar~N~~~~-- 202 (317)
+.+++|.....+...+..+.. .++.+|||+|||||.++++++++ ++.+|+++|+|+.++ +.+++|++.|
T Consensus 25 ~~F~np~~~~nr~l~~~~l~~-------~~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av-~~a~~N~~~n~~ 96 (378)
T 2dul_A 25 PVFYNPRMALNRDIVVVLLNI-------LNPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAY-ELMKRNVMLNFD 96 (378)
T ss_dssp CCCCCGGGHHHHHHHHHHHHH-------HCCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHH-HHHHHHHHHHCC
T ss_pred CceeCCchHHHHHHHHHHHHH-------cCCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHH-HHHHHHHHHhcc
Confidence 567899998877776666654 25789999999999999998886 666899999999999 9999999999
Q ss_pred -------------CCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 203 -------------GFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 203 -------------gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
|+.+ ++++++|+.+++... ...||+|++|||+.. .+.++... +.|++||++++.+
T Consensus 97 ~~~~~~~~~~~~~gl~~-i~v~~~Da~~~~~~~------~~~fD~I~lDP~~~~---~~~l~~a~--~~lk~gG~l~vt~ 164 (378)
T 2dul_A 97 GELRESKGRAILKGEKT-IVINHDDANRLMAER------HRYFHFIDLDPFGSP---MEFLDTAL--RSAKRRGILGVTA 164 (378)
T ss_dssp SCCEECSSEEEEESSSE-EEEEESCHHHHHHHS------TTCEEEEEECCSSCC---HHHHHHHH--HHEEEEEEEEEEE
T ss_pred cccccccccccccCCCc-eEEEcCcHHHHHHhc------cCCCCEEEeCCCCCH---HHHHHHHH--HhcCCCCEEEEEe
Confidence 8865 999999999887543 357999999997642 34555443 3689999999987
Q ss_pred C
Q 021116 270 P 270 (317)
Q Consensus 270 ~ 270 (317)
.
T Consensus 165 t 165 (378)
T 2dul_A 165 T 165 (378)
T ss_dssp C
T ss_pred e
Confidence 3
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=4.9e-16 Score=161.76 Aligned_cols=109 Identities=23% Similarity=0.307 Sum_probs=92.6
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCC-CceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFL-DVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~-~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
++++|||+|||||.+++.++..|+.+|++||+|+.++ +.|++|++.||+. ++++++++|+.+++... .++||
T Consensus 539 ~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al-~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~------~~~fD 611 (703)
T 3v97_A 539 KGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYL-EWAERNLRLNGLTGRAHRLIQADCLAWLREA------NEQFD 611 (703)
T ss_dssp TTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHH-HHHHHHHHHTTCCSTTEEEEESCHHHHHHHC------CCCEE
T ss_pred CCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHH-HHHHHHHHHcCCCccceEEEecCHHHHHHhc------CCCcc
Confidence 5789999999999999999998988899999999999 9999999999997 57999999999987653 47899
Q ss_pred EEEECCCCCCc------------cHHHHHHHHHHcCCcCCCeEEEEEeCCC
Q 021116 234 YMSVTPPYTAV------------DYEVLMAQISKSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 234 lV~~dPPy~~~------------~~~~~l~~L~~~~lLkpgG~ivv~~~~~ 272 (317)
+|++|||+... .+.+++..+. ++|+|||+++++++..
T Consensus 612 ~Ii~DPP~f~~~~~~~~~~~~~~~~~~ll~~a~--~~LkpgG~L~~s~~~~ 660 (703)
T 3v97_A 612 LIFIDPPTFSNSKRMEDAFDVQRDHLALMKDLK--RLLRAGGTIMFSNNKR 660 (703)
T ss_dssp EEEECCCSBC-------CCBHHHHHHHHHHHHH--HHEEEEEEEEEEECCT
T ss_pred EEEECCccccCCccchhHHHHHHHHHHHHHHHH--HhcCCCcEEEEEECCc
Confidence 99999997421 2344454443 5899999999999864
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.1e-15 Score=140.63 Aligned_cols=138 Identities=22% Similarity=0.229 Sum_probs=108.6
Q ss_pred eecceEEecCCCC-CCCCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHc-CCCEEEEEeCCHHHHH
Q 021116 115 KARRKKLLSPKGM-DVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVS 192 (317)
Q Consensus 115 ~~~G~~l~~p~~~-~~rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~-Ga~~V~aVDin~~al~ 192 (317)
.|.|..+.+..+. ..||.++.+.+.+.+.+. .++.+|||+|||+|.+++.++.. +..+|+++|+++.++
T Consensus 76 ~f~~~~~~~~~~~~ipr~~te~l~~~~l~~~~--------~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l- 146 (276)
T 2b3t_A 76 EFWSLPLFVSPATLIPRPDTECLVEQALARLP--------EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAV- 146 (276)
T ss_dssp EETTEEEECCTTSCCCCTTHHHHHHHHHHHSC--------SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHH-
T ss_pred EECCceEEeCCCCcccCchHHHHHHHHHHhcc--------cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHH-
Confidence 5678888866555 469999988888877663 14679999999999999988754 456899999999999
Q ss_pred HHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCc--------------------------cH
Q 021116 193 NVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAV--------------------------DY 246 (317)
Q Consensus 193 ~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~--------------------------~~ 246 (317)
+.|++|++.+++. +++++++|+.+.+ ..++||+|++||||... .+
T Consensus 147 ~~a~~n~~~~~~~-~v~~~~~d~~~~~--------~~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~ 217 (276)
T 2b3t_A 147 SLAQRNAQHLAIK-NIHILQSDWFSAL--------AGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADI 217 (276)
T ss_dssp HHHHHHHHHHTCC-SEEEECCSTTGGG--------TTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHH
T ss_pred HHHHHHHHHcCCC-ceEEEEcchhhhc--------ccCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHH
Confidence 9999999999986 5999999987653 13689999999999642 12
Q ss_pred HHHHHHHHHcCCcCCCeEEEEEeCCC
Q 021116 247 EVLMAQISKSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 247 ~~~l~~L~~~~lLkpgG~ivv~~~~~ 272 (317)
..+++.+ .++|+|||+++++....
T Consensus 218 ~~~l~~~--~~~LkpgG~l~~~~~~~ 241 (276)
T 2b3t_A 218 VHIIEQS--RNALVSGGFLLLEHGWQ 241 (276)
T ss_dssp HHHHHHH--GGGEEEEEEEEEECCSS
T ss_pred HHHHHHH--HHhcCCCCEEEEEECch
Confidence 3333333 36899999999987654
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.66 E-value=7.8e-16 Score=146.87 Aligned_cols=141 Identities=15% Similarity=0.067 Sum_probs=106.7
Q ss_pred CCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcC--CCEEEEEeCCHHHHHHHHHHhHHHhCCCCc
Q 021116 130 RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRG--CSEVHFVEMDPWVVSNVLIPNLEWTGFLDV 207 (317)
Q Consensus 130 rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~G--a~~V~aVDin~~al~~~ar~N~~~~gl~~~ 207 (317)
.|..+.++.++.+.+.. .++.+|||+|||+|.++++++..+ ..+|+++|+|+.++ +.|++|++.+|+. +
T Consensus 185 a~l~~~la~~l~~~~~~-------~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i-~~a~~n~~~~g~~-~ 255 (354)
T 3tma_A 185 GSLTPVLAQALLRLADA-------RPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRL-GLAREAALASGLS-W 255 (354)
T ss_dssp CSCCHHHHHHHHHHTTC-------CTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHH-HHHHHHHHHTTCT-T
T ss_pred CCcCHHHHHHHHHHhCC-------CCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHH-HHHHHHHHHcCCC-c
Confidence 45667777777776643 357899999999999999998864 25799999999999 9999999999997 6
Q ss_pred eEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCcc---------HHHHHHHHHHcCCcCCCeEEEEEeCCCCCcc--
Q 021116 208 SSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVD---------YEVLMAQISKSALVGKDSFIVVEYPLRTDML-- 276 (317)
Q Consensus 208 v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~---------~~~~l~~L~~~~lLkpgG~ivv~~~~~~~l~-- 276 (317)
++++++|+.++.. ....||+|++||||+... |..+++.+. ++|+|||.+++.++....+.
T Consensus 256 i~~~~~D~~~~~~-------~~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~--~~LkpgG~l~i~t~~~~~~~~~ 326 (354)
T 3tma_A 256 IRFLRADARHLPR-------FFPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGAL--ALLPPGGRVALLTLRPALLKRA 326 (354)
T ss_dssp CEEEECCGGGGGG-------TCCCCSEEEECCCSCC----CHHHHHHHHHHHHHHH--HTSCTTCEEEEEESCHHHHHHH
T ss_pred eEEEeCChhhCcc-------ccCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHH--HhcCCCcEEEEEeCCHHHHHHH
Confidence 9999999987632 235689999999997531 244555554 58999999999887542111
Q ss_pred ccCCCeEEEEEee
Q 021116 277 DTCGCLVKIKDRR 289 (317)
Q Consensus 277 ~~~~~~~~~~~r~ 289 (317)
.. .+|...+.+.
T Consensus 327 ~~-~g~~~~~~~~ 338 (354)
T 3tma_A 327 LP-PGFALRHARV 338 (354)
T ss_dssp CC-TTEEEEEEEE
T ss_pred hh-cCcEEEEEEE
Confidence 11 5677766655
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=99.64 E-value=1.3e-15 Score=147.58 Aligned_cols=112 Identities=21% Similarity=0.216 Sum_probs=90.2
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccE
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDl 234 (317)
++.+|||+|||+|.+++.++..|+.+|+++|+++.++ +.|++|++.+|+.++++++++|+.+++..+. ....+||+
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l-~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~---~~~~~fD~ 292 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAI-ETAKENAKLNGVEDRMKFIVGSAFEEMEKLQ---KKGEKFDI 292 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHH-HHHHHHHHHTTCGGGEEEEESCHHHHHHHHH---HTTCCEEE
T ss_pred CCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHH-HHHHHHHHHcCCCccceEEECCHHHHHHHHH---hhCCCCCE
Confidence 5789999999999999999888888999999999999 9999999999997679999999998865431 12368999
Q ss_pred EEECCCCCCc----------cHHHHHHHHHHcCCcCCCeEEEEEeCCC
Q 021116 235 MSVTPPYTAV----------DYEVLMAQISKSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 235 V~~dPPy~~~----------~~~~~l~~L~~~~lLkpgG~ivv~~~~~ 272 (317)
|++|||+... .+.+++..+ .++|+|||++++.+...
T Consensus 293 Vi~dpP~~~~~~~~~~~~~~~~~~~l~~~--~~~LkpgG~lv~~~~~~ 338 (396)
T 2as0_A 293 VVLDPPAFVQHEKDLKAGLRAYFNVNFAG--LNLVKDGGILVTCSCSQ 338 (396)
T ss_dssp EEECCCCSCSSGGGHHHHHHHHHHHHHHH--HTTEEEEEEEEEEECCT
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHHHHH--HHhcCCCcEEEEEECCC
Confidence 9999998532 133333333 36999999887766543
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.63 E-value=7.4e-16 Score=141.29 Aligned_cols=116 Identities=20% Similarity=0.195 Sum_probs=89.5
Q ss_pred CCCCeEEEECCCcchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHhHHH---hCCCCceEEEEecHHHHHHHHhhhcCCC
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEW---TGFLDVSSIHTVRVETFLERAEQFVGKD 229 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~G-a~~V~aVDin~~al~~~ar~N~~~---~gl~~~v~ii~gD~~~~l~~~~~~~~~~ 229 (317)
.++.+|||+|||+|.+++.++.++ ..+|++||+++.++ +.|++|++. +++.++++++++|+.++......-....
T Consensus 35 ~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~-~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~ 113 (260)
T 2ozv_A 35 DRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMA-EFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPD 113 (260)
T ss_dssp CSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHH-HHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCT
T ss_pred cCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHH-HHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCC
Confidence 357899999999999999988875 35899999999999 999999999 8888789999999987743210000124
Q ss_pred CCccEEEECCCCCCc-------------------cHHHHHHHHHHcCCcCCCeEEEEEeCCC
Q 021116 230 GPFDYMSVTPPYTAV-------------------DYEVLMAQISKSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 230 ~~fDlV~~dPPy~~~-------------------~~~~~l~~L~~~~lLkpgG~ivv~~~~~ 272 (317)
++||+|++||||... .++.+++.+. ++|+|||++++.++..
T Consensus 114 ~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~--~~LkpgG~l~~~~~~~ 173 (260)
T 2ozv_A 114 EHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTAS--AIMVSGGQLSLISRPQ 173 (260)
T ss_dssp TCEEEEEECCCC---------------------CCHHHHHHHHH--HHEEEEEEEEEEECGG
T ss_pred CCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHH--HHcCCCCEEEEEEcHH
Confidence 689999999999753 1445555544 5899999999988754
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.5e-15 Score=140.71 Aligned_cols=103 Identities=15% Similarity=0.222 Sum_probs=86.8
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccE
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDl 234 (317)
++.+|||+|||+|.+++.++..|+.+|+++|+|+.++ +.|++|++.+++.++++++++|+.++.. ..+||+
T Consensus 125 ~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~-~~a~~n~~~n~~~~~v~~~~~D~~~~~~--------~~~fD~ 195 (278)
T 2frn_A 125 PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTF-KFLVENIHLNKVEDRMSAYNMDNRDFPG--------ENIADR 195 (278)
T ss_dssp TTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHH-HHHHHHHHHTTCTTTEEEECSCTTTCCC--------CSCEEE
T ss_pred CCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHH-HHHHHHHHHcCCCceEEEEECCHHHhcc--------cCCccE
Confidence 4789999999999999999988876899999999999 9999999999998889999999987642 468999
Q ss_pred EEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCC
Q 021116 235 MSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPL 271 (317)
Q Consensus 235 V~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~ 271 (317)
|++|||+.. .+.++.+. ++|+|||++++....
T Consensus 196 Vi~~~p~~~---~~~l~~~~--~~LkpgG~l~~~~~~ 227 (278)
T 2frn_A 196 ILMGYVVRT---HEFIPKAL--SIAKDGAIIHYHNTV 227 (278)
T ss_dssp EEECCCSSG---GGGHHHHH--HHEEEEEEEEEEEEE
T ss_pred EEECCchhH---HHHHHHHH--HHCCCCeEEEEEEee
Confidence 999999754 23344333 378999999886654
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.63 E-value=2.1e-16 Score=142.97 Aligned_cols=138 Identities=15% Similarity=0.117 Sum_probs=97.3
Q ss_pred CCCeEEEECCCcchHHHHHHHc---CCCEEEEEeCCHHHHHHHHHHhHHHh---CCCCc---------------------
Q 021116 155 RPGRWLDLYSGTGSVGIEAISR---GCSEVHFVEMDPWVVSNVLIPNLEWT---GFLDV--------------------- 207 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~---Ga~~V~aVDin~~al~~~ar~N~~~~---gl~~~--------------------- 207 (317)
.+.+|||+|||+|.++++++.. +..+|+++|+|+.++ +.|++|+..+ ++.++
T Consensus 51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (250)
T 1o9g_A 51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPL-ELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQ 129 (250)
T ss_dssp SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHH-HHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHH-HHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhh
Confidence 4679999999999999998765 235799999999999 9999999877 55433
Q ss_pred ----eE-------------EEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCcc----------HHHHHHHHHHcCCcC
Q 021116 208 ----SS-------------IHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVD----------YEVLMAQISKSALVG 260 (317)
Q Consensus 208 ----v~-------------ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~----------~~~~l~~L~~~~lLk 260 (317)
++ ++++|+.+...... . ....+||+|++||||.... +..+++.+. ++|+
T Consensus 130 ~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~-~-~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~--~~Lk 205 (250)
T 1o9g_A 130 AARRLRERLTAEGGALPCAIRTADVFDPRALSA-V-LAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLA--SALP 205 (250)
T ss_dssp HHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHH-H-HTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHH--HHSC
T ss_pred hhhhhhhhccccccccccceeeccccccccccc-c-cCCCCceEEEeCCCeeccccccccccccHHHHHHHHHH--HhcC
Confidence 56 89999876532100 0 0124799999999986421 234555544 5899
Q ss_pred CCeEEEEEeCCCCCccccCCCeEEEEEeecCceEEEEEee
Q 021116 261 KDSFIVVEYPLRTDMLDTCGCLVKIKDRRFGRTHLAIYGP 300 (317)
Q Consensus 261 pgG~ivv~~~~~~~l~~~~~~~~~~~~r~yG~~~l~~~~p 300 (317)
|||++++...... .. ...+..+++..+|...+.+|+.
T Consensus 206 pgG~l~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~ 242 (250)
T 1o9g_A 206 AHAVIAVTDRSRK-IP--VAPVKALERLKIGTRSAVMVRA 242 (250)
T ss_dssp TTCEEEEEESSSC-CC--CTTSCCSEEEEETTEEEEEEEH
T ss_pred CCcEEEEeCcchh-cc--ccchhhHHHhhcCCccEEEEec
Confidence 9999998544332 22 1223334567889999988864
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.9e-15 Score=146.99 Aligned_cols=158 Identities=15% Similarity=0.140 Sum_probs=104.5
Q ss_pred CCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCC-------------------------------
Q 021116 130 RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGC------------------------------- 178 (317)
Q Consensus 130 rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga------------------------------- 178 (317)
-|..+.++.++...... .++.+|||+|||||++.++|+..+.
T Consensus 177 Apl~e~lAa~ll~~~~~-------~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~ 249 (385)
T 3ldu_A 177 APIRETLAAGLIYLTPW-------KAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAF 249 (385)
T ss_dssp CCCCHHHHHHHHHTSCC-------CTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHhhCC-------CCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHH
Confidence 35566677666554432 3578999999999999999887643
Q ss_pred --------CEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCcc-----
Q 021116 179 --------SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVD----- 245 (317)
Q Consensus 179 --------~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~----- 245 (317)
.+|+++|+|+.++ +.|++|++.+|+.+.+++.++|+.++. ...+||+|++||||+...
T Consensus 250 ~~~~~~~~~~V~GvDid~~ai-~~Ar~Na~~~gl~~~i~~~~~D~~~l~--------~~~~~D~Iv~NPPyg~rl~~~~~ 320 (385)
T 3ldu_A 250 NKIDNESKFKIYGYDIDEESI-DIARENAEIAGVDEYIEFNVGDATQFK--------SEDEFGFIITNPPYGERLEDKDS 320 (385)
T ss_dssp HHSCCSCCCCEEEEESCHHHH-HHHHHHHHHHTCGGGEEEEECCGGGCC--------CSCBSCEEEECCCCCCSHHHHHH
T ss_pred HHhhccCCceEEEEECCHHHH-HHHHHHHHHcCCCCceEEEECChhhcC--------cCCCCcEEEECCCCcCccCCHHH
Confidence 3699999999999 999999999999878999999998753 135899999999998532
Q ss_pred HHHHHHHHHHcCCc--CCCeEEEEEeCCCCCccccCCCeEEEEE-eec-CceEEEEEeechhhhcc
Q 021116 246 YEVLMAQISKSALV--GKDSFIVVEYPLRTDMLDTCGCLVKIKD-RRF-GRTHLAIYGPDWAQKKR 307 (317)
Q Consensus 246 ~~~~l~~L~~~~lL--kpgG~ivv~~~~~~~l~~~~~~~~~~~~-r~y-G~~~l~~~~p~~~~~~~ 307 (317)
...+...+.. .| -+|+.+++-++... +... -+....+. +.| |..+..+|....+..+|
T Consensus 321 l~~ly~~lg~--~lk~~~g~~~~iit~~~~-l~~~-~g~~~~~~~~l~nG~l~~~~~~~~~~~~~~ 382 (385)
T 3ldu_A 321 VKQLYKELGY--AFRKLKNWSYYLITSYED-FEYE-FGQKADKKRKLYNGMLKTNFFQYPGPKPPR 382 (385)
T ss_dssp HHHHHHHHHH--HHHTSBSCEEEEEESCTT-HHHH-HTSCCSEEEEEEETTEEEEEEEECCCCCCC
T ss_pred HHHHHHHHHH--HHhhCCCCEEEEEECCHH-HHHh-hCCCcccceEEecCCEEEEEEEEECCCCCC
Confidence 2222322221 22 35777777666433 2211 12222222 223 45666666554444333
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.62 E-value=2e-15 Score=147.27 Aligned_cols=159 Identities=16% Similarity=0.171 Sum_probs=102.9
Q ss_pred CCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCC-------------------------------
Q 021116 130 RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGC------------------------------- 178 (317)
Q Consensus 130 rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga------------------------------- 178 (317)
-|..+.++.++.....- .++..|||+|||||++.++|+..+.
T Consensus 183 Apl~e~lAa~ll~l~~~-------~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~ 255 (393)
T 3k0b_A 183 APIKETMAAALVLLTSW-------HPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAE 255 (393)
T ss_dssp CSCCHHHHHHHHHHSCC-------CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHhCC-------CCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHH
Confidence 45677777777655432 3578999999999999999887543
Q ss_pred --------CEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCcc-----
Q 021116 179 --------SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVD----- 245 (317)
Q Consensus 179 --------~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~----- 245 (317)
.+|+++|+|+.++ +.|++|++.+|+.++++++++|+.++. ...+||+|++||||+...
T Consensus 256 ~~~~~~~~~~V~GvDid~~al-~~Ar~Na~~~gl~~~I~~~~~D~~~~~--------~~~~fD~Iv~NPPYg~rl~~~~~ 326 (393)
T 3k0b_A 256 DLANYDQPLNIIGGDIDARLI-EIAKQNAVEAGLGDLITFRQLQVADFQ--------TEDEYGVVVANPPYGERLEDEEA 326 (393)
T ss_dssp HHCCTTCCCCEEEEESCHHHH-HHHHHHHHHTTCTTCSEEEECCGGGCC--------CCCCSCEEEECCCCCCSHHHHHH
T ss_pred HhhcccCCceEEEEECCHHHH-HHHHHHHHHcCCCCceEEEECChHhCC--------CCCCCCEEEECCCCccccCCchh
Confidence 2599999999999 999999999999888999999998753 135899999999997532
Q ss_pred HHHHHHHHHH-cCCcCCCeEEEEEeCCCCCccccCCCeEEEEE-eec-CceEEEEEeechhhhcc
Q 021116 246 YEVLMAQISK-SALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD-RRF-GRTHLAIYGPDWAQKKR 307 (317)
Q Consensus 246 ~~~~l~~L~~-~~lLkpgG~ivv~~~~~~~l~~~~~~~~~~~~-r~y-G~~~l~~~~p~~~~~~~ 307 (317)
...+...+.+ .+. -+|+.+++-++.. .+... -++...+. +-| |..+..+|....+.++|
T Consensus 327 l~~ly~~lg~~lk~-~~g~~~~iit~~~-~l~~~-~g~~~~~~~~l~nG~l~~~~~~~~~~~~~~ 388 (393)
T 3k0b_A 327 VRQLYREMGIVYKR-MPTWSVYVLTSYE-LFEEV-YGKKATKKRKLYNGYLRTDLYQYWGPRKPR 388 (393)
T ss_dssp HHHHHHHHHHHHHT-CTTCEEEEEECCT-THHHH-HTSCCSEEEEEC----CEEEEEECCC----
T ss_pred HHHHHHHHHHHHhc-CCCCEEEEEECCH-HHHHH-hCCCcccceEEecCCEEEEEEEEECCCCCC
Confidence 2222222221 012 3588887777643 33221 12222222 234 34455556554444444
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.62 E-value=5.1e-16 Score=134.82 Aligned_cols=130 Identities=18% Similarity=0.215 Sum_probs=80.8
Q ss_pred CCCCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHhHHHhCCCC
Q 021116 128 DVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGC-SEVHFVEMDPWVVSNVLIPNLEWTGFLD 206 (317)
Q Consensus 128 ~~rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga-~~V~aVDin~~al~~~ar~N~~~~gl~~ 206 (317)
..||.++.+.+.+.+.+... .++.+|||+|||+|.+++.++..+. .+|+++|+|+.++ +.|++|++.++.
T Consensus 9 ~p~~~~~~~~~~~~~~l~~~------~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~-~~a~~~~~~~~~-- 79 (215)
T 4dzr_A 9 IPRPDTEVLVEEAIRFLKRM------PSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDAL-AVARRNAERFGA-- 79 (215)
T ss_dssp SCCHHHHHHHHHHHHHHTTC------CTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-------------------
T ss_pred CCCccHHHHHHHHHHHhhhc------CCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHH-HHHHHHHHHhCC--
Confidence 45788888888888887541 3578999999999999999888753 3899999999999 999999998887
Q ss_pred ceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCcc-H--------------------------HHHHHHHHHcCCc
Q 021116 207 VSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVD-Y--------------------------EVLMAQISKSALV 259 (317)
Q Consensus 207 ~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~-~--------------------------~~~l~~L~~~~lL 259 (317)
+++++++|+.+.+.... ...++||+|++||||.... . ...++. ..++|
T Consensus 80 ~~~~~~~d~~~~~~~~~---~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~L 154 (215)
T 4dzr_A 80 VVDWAAADGIEWLIERA---ERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAAL--PPYVL 154 (215)
T ss_dssp ---CCHHHHHHHHHHHH---HTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTC--CGGGB
T ss_pred ceEEEEcchHhhhhhhh---hccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHH--HHHHh
Confidence 58899999988654310 0137899999999996421 1 122222 24789
Q ss_pred CCCeE-EEEEeCC
Q 021116 260 GKDSF-IVVEYPL 271 (317)
Q Consensus 260 kpgG~-ivv~~~~ 271 (317)
+|||+ ++++...
T Consensus 155 kpgG~l~~~~~~~ 167 (215)
T 4dzr_A 155 ARGRAGVFLEVGH 167 (215)
T ss_dssp CSSSEEEEEECTT
T ss_pred cCCCeEEEEEECC
Confidence 99999 7777654
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.1e-15 Score=135.14 Aligned_cols=121 Identities=13% Similarity=0.047 Sum_probs=97.4
Q ss_pred ChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEE
Q 021116 132 MMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH 211 (317)
Q Consensus 132 t~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii 211 (317)
+...++..+++.+.. .++.+|||+|||+|.+++++++++ .+|+++|+++.++ +.|++|++.+|+.++++++
T Consensus 39 ~~~~~~~~~l~~l~~-------~~~~~vLDlGcG~G~~~~~la~~~-~~v~~vD~s~~~~-~~a~~~~~~~g~~~~v~~~ 109 (204)
T 3njr_A 39 TKSPMRALTLAALAP-------RRGELLWDIGGGSGSVSVEWCLAG-GRAITIEPRADRI-ENIQKNIDTYGLSPRMRAV 109 (204)
T ss_dssp CCHHHHHHHHHHHCC-------CTTCEEEEETCTTCHHHHHHHHTT-CEEEEEESCHHHH-HHHHHHHHHTTCTTTEEEE
T ss_pred CcHHHHHHHHHhcCC-------CCCCEEEEecCCCCHHHHHHHHcC-CEEEEEeCCHHHH-HHHHHHHHHcCCCCCEEEE
Confidence 456677777777654 467899999999999999988884 5899999999999 9999999999997679999
Q ss_pred EecHHHHHHHHhhhcCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCCCCC
Q 021116 212 TVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTD 274 (317)
Q Consensus 212 ~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~~~ 274 (317)
++|+.+.+.. .+.||+|++++.. ..+ +++.+. ++|+|||++++.......
T Consensus 110 ~~d~~~~~~~-------~~~~D~v~~~~~~---~~~-~l~~~~--~~LkpgG~lv~~~~~~~~ 159 (204)
T 3njr_A 110 QGTAPAALAD-------LPLPEAVFIGGGG---SQA-LYDRLW--EWLAPGTRIVANAVTLES 159 (204)
T ss_dssp ESCTTGGGTT-------SCCCSEEEECSCC---CHH-HHHHHH--HHSCTTCEEEEEECSHHH
T ss_pred eCchhhhccc-------CCCCCEEEECCcc---cHH-HHHHHH--HhcCCCcEEEEEecCccc
Confidence 9999875421 2579999999733 344 666665 479999999998875444
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.5e-15 Score=145.54 Aligned_cols=140 Identities=14% Similarity=0.109 Sum_probs=104.7
Q ss_pred ceEEecCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcC-CCEEEEEeCCHHHHHHHHH
Q 021116 118 RKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLI 196 (317)
Q Consensus 118 G~~l~~p~~~~~rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~G-a~~V~aVDin~~al~~~ar 196 (317)
+..+...++.+.....+...+.+.+.+.. ..+.+|||+|||+|.+++.++.++ ..+|++||+|+.++ +.|+
T Consensus 192 ~~~~~~~pg~Fs~~~~d~~~~~ll~~l~~-------~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al-~~Ar 263 (375)
T 4dcm_A 192 DWTIHNHANVFSRTGLDIGARFFMQHLPE-------NLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAV-ASSR 263 (375)
T ss_dssp TEEEEECTTCTTCSSCCHHHHHHHHTCCC-------SCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHH-HHHH
T ss_pred ceEEEeCCCcccCCcccHHHHHHHHhCcc-------cCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHH-HHHH
Confidence 34566666666665556555566555543 345899999999999999998875 56899999999999 9999
Q ss_pred HhHHHhCCCC--ceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCc------cHHHHHHHHHHcCCcCCCeEEEEE
Q 021116 197 PNLEWTGFLD--VSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAV------DYEVLMAQISKSALVGKDSFIVVE 268 (317)
Q Consensus 197 ~N~~~~gl~~--~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~------~~~~~l~~L~~~~lLkpgG~ivv~ 268 (317)
+|++.+++.+ +++++.+|+.+.+ ..++||+|++||||+.. ...++++.+. ++|+|||++++.
T Consensus 264 ~n~~~ngl~~~~~v~~~~~D~~~~~--------~~~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~--~~LkpgG~l~iv 333 (375)
T 4dcm_A 264 LNVETNMPEALDRCEFMINNALSGV--------EPFRFNAVLCNPPFHQQHALTDNVAWEMFHHAR--RCLKINGELYIV 333 (375)
T ss_dssp HHHHHHCGGGGGGEEEEECSTTTTC--------CTTCEEEEEECCCC-------CCHHHHHHHHHH--HHEEEEEEEEEE
T ss_pred HHHHHcCCCcCceEEEEechhhccC--------CCCCeeEEEECCCcccCcccCHHHHHHHHHHHH--HhCCCCcEEEEE
Confidence 9999999764 4788999987643 24689999999999742 1234555554 489999999998
Q ss_pred eCCCCCc
Q 021116 269 YPLRTDM 275 (317)
Q Consensus 269 ~~~~~~l 275 (317)
++.....
T Consensus 334 ~n~~~~~ 340 (375)
T 4dcm_A 334 ANRHLDY 340 (375)
T ss_dssp EETTSCH
T ss_pred EECCcCH
Confidence 8766543
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=4e-15 Score=144.53 Aligned_cols=137 Identities=20% Similarity=0.182 Sum_probs=104.7
Q ss_pred EEecCCCCCC----CCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHH
Q 021116 120 KLLSPKGMDV----RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVL 195 (317)
Q Consensus 120 ~l~~p~~~~~----rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~a 195 (317)
.+....+.+. ++++..+.+.+.+.+... ..++.+|||+|||+|.+++.++++|+ +|++||+|+.++ +.|
T Consensus 199 ~~~~~pgvFs~~~~d~~t~~ll~~l~~~l~~~-----~~~~~~VLDlGcG~G~~~~~la~~g~-~V~gvDis~~al-~~A 271 (381)
T 3dmg_A 199 TFHHLPGVFSAGKVDPASLLLLEALQERLGPE-----GVRGRQVLDLGAGYGALTLPLARMGA-EVVGVEDDLASV-LSL 271 (381)
T ss_dssp EEEECTTCTTTTSCCHHHHHHHHHHHHHHCTT-----TTTTCEEEEETCTTSTTHHHHHHTTC-EEEEEESBHHHH-HHH
T ss_pred EEEeCCCceeCCCCCHHHHHHHHHHHHhhccc-----CCCCCEEEEEeeeCCHHHHHHHHcCC-EEEEEECCHHHH-HHH
Confidence 4455555543 456677777776665311 13678999999999999999988876 899999999999 999
Q ss_pred HHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCc------cHHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 196 IPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAV------DYEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 196 r~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~------~~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
++|++.+++. ++++.+|+.+... ..++||+|++||||+.+ .....++.+. ++|+|||++++.+
T Consensus 272 ~~n~~~~~~~--v~~~~~D~~~~~~-------~~~~fD~Ii~npp~~~~~~~~~~~~~~~l~~~~--~~LkpGG~l~iv~ 340 (381)
T 3dmg_A 272 QKGLEANALK--AQALHSDVDEALT-------EEARFDIIVTNPPFHVGGAVILDVAQAFVNVAA--ARLRPGGVFFLVS 340 (381)
T ss_dssp HHHHHHTTCC--CEEEECSTTTTSC-------TTCCEEEEEECCCCCTTCSSCCHHHHHHHHHHH--HHEEEEEEEEEEE
T ss_pred HHHHHHcCCC--eEEEEcchhhccc-------cCCCeEEEEECCchhhcccccHHHHHHHHHHHH--HhcCcCcEEEEEE
Confidence 9999999874 7899999887531 23689999999999752 2344555444 5899999999998
Q ss_pred CCCCC
Q 021116 270 PLRTD 274 (317)
Q Consensus 270 ~~~~~ 274 (317)
+....
T Consensus 341 n~~l~ 345 (381)
T 3dmg_A 341 NPFLK 345 (381)
T ss_dssp CTTSC
T ss_pred cCCCC
Confidence 76644
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=3.3e-15 Score=144.37 Aligned_cols=111 Identities=19% Similarity=0.220 Sum_probs=89.6
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccE
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDl 234 (317)
++.+|||+|||+|.+++.++.. +.+|+++|+++.++ +.|++|++.||+.+ ++++++|+.+++.... ....+||+
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~-~~~v~~vD~s~~~~-~~a~~n~~~n~~~~-~~~~~~d~~~~~~~~~---~~~~~fD~ 282 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG-FREVVAVDSSAEAL-RRAEENARLNGLGN-VRVLEANAFDLLRRLE---KEGERFDL 282 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHH-HHHHHHHHHTTCTT-EEEEESCHHHHHHHHH---HTTCCEEE
T ss_pred CCCeEEEeeeccCHHHHHHHHh-CCEEEEEECCHHHH-HHHHHHHHHcCCCC-ceEEECCHHHHHHHHH---hcCCCeeE
Confidence 4679999999999999998877 66899999999999 99999999999976 9999999999875432 12368999
Q ss_pred EEECCCCCCc----------cHHHHHHHHHHcCCcCCCeEEEEEeCCCC
Q 021116 235 MSVTPPYTAV----------DYEVLMAQISKSALVGKDSFIVVEYPLRT 273 (317)
Q Consensus 235 V~~dPPy~~~----------~~~~~l~~L~~~~lLkpgG~ivv~~~~~~ 273 (317)
|++|||+... .+.+++..+. ++|+|||++++.+....
T Consensus 283 Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~--~~LkpgG~l~~~~~~~~ 329 (382)
T 1wxx_A 283 VVLDPPAFAKGKKDVERAYRAYKEVNLRAI--KLLKEGGILATASCSHH 329 (382)
T ss_dssp EEECCCCSCCSTTSHHHHHHHHHHHHHHHH--HTEEEEEEEEEEECCTT
T ss_pred EEECCCCCCCChhHHHHHHHHHHHHHHHHH--HhcCCCCEEEEEECCCC
Confidence 9999998431 2334444433 58999999998877543
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.61 E-value=6.6e-15 Score=128.66 Aligned_cols=121 Identities=15% Similarity=0.070 Sum_probs=99.1
Q ss_pred ChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEE
Q 021116 132 MMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSI 210 (317)
Q Consensus 132 t~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~i 210 (317)
+...++..+++.+.. .++.+|||+|||+|.+++.++..+ ..+|+++|+++.++ +.|++|++.+++ +++++
T Consensus 24 ~~~~i~~~~l~~l~~-------~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~-~~a~~~~~~~~~-~~v~~ 94 (204)
T 3e05_A 24 TKQEVRAVTLSKLRL-------QDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYL-GFIRDNLKKFVA-RNVTL 94 (204)
T ss_dssp CCHHHHHHHHHHTTC-------CTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHH-HHHHHHHHHHTC-TTEEE
T ss_pred ChHHHHHHHHHHcCC-------CCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHH-HHHHHHHHHhCC-CcEEE
Confidence 667777777777654 467899999999999999988876 46899999999999 999999999998 56999
Q ss_pred EEecHHHHHHHHhhhcCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCCC
Q 021116 211 HTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 211 i~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~ 272 (317)
+++|+.+.+.. .+.||+|+++.++. .....++.+. ++|+|||++++.....
T Consensus 95 ~~~d~~~~~~~-------~~~~D~i~~~~~~~--~~~~~l~~~~--~~LkpgG~l~~~~~~~ 145 (204)
T 3e05_A 95 VEAFAPEGLDD-------LPDPDRVFIGGSGG--MLEEIIDAVD--RRLKSEGVIVLNAVTL 145 (204)
T ss_dssp EECCTTTTCTT-------SCCCSEEEESCCTT--CHHHHHHHHH--HHCCTTCEEEEEECBH
T ss_pred EeCChhhhhhc-------CCCCCEEEECCCCc--CHHHHHHHHH--HhcCCCeEEEEEeccc
Confidence 99998765421 26799999998764 6677777775 4899999999987643
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.60 E-value=8e-15 Score=142.67 Aligned_cols=156 Identities=18% Similarity=0.200 Sum_probs=106.0
Q ss_pred CCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCC-------------------------------
Q 021116 130 RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGC------------------------------- 178 (317)
Q Consensus 130 rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga------------------------------- 178 (317)
-|..+.++.++.....- .++..+||+|||||++.|||+..+.
T Consensus 176 Apl~e~LAaall~l~~~-------~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~ 248 (384)
T 3ldg_A 176 APIKENMAAAIILLSNW-------FPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEAD 248 (384)
T ss_dssp CCCCHHHHHHHHHHTTC-------CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHhCC-------CCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHH
Confidence 35667777777655432 3578999999999999999886543
Q ss_pred --------CEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCc-----c
Q 021116 179 --------SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAV-----D 245 (317)
Q Consensus 179 --------~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~-----~ 245 (317)
.+|+++|+|+.++ +.|++|++.+|+.++++++++|+.++. ...+||+|++||||+.. .
T Consensus 249 ~~~~~~~~~~v~GvDid~~al-~~Ar~Na~~~gl~~~I~~~~~D~~~l~--------~~~~fD~Iv~NPPYG~rl~~~~~ 319 (384)
T 3ldg_A 249 EQADYDIQLDISGFDFDGRMV-EIARKNAREVGLEDVVKLKQMRLQDFK--------TNKINGVLISNPPYGERLLDDKA 319 (384)
T ss_dssp HHCCTTCCCCEEEEESCHHHH-HHHHHHHHHTTCTTTEEEEECCGGGCC--------CCCCSCEEEECCCCTTTTSCHHH
T ss_pred HhhhccCCceEEEEECCHHHH-HHHHHHHHHcCCCCceEEEECChHHCC--------ccCCcCEEEECCchhhccCCHHH
Confidence 2599999999999 999999999999888999999998753 13589999999999753 1
Q ss_pred HHHHHHHHHH-cCCcCCCeEEEEEeCCCCCccccCCCeEEEEE-eec-CceEEEEEeechhh
Q 021116 246 YEVLMAQISK-SALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD-RRF-GRTHLAIYGPDWAQ 304 (317)
Q Consensus 246 ~~~~l~~L~~-~~lLkpgG~ivv~~~~~~~l~~~~~~~~~~~~-r~y-G~~~l~~~~p~~~~ 304 (317)
...+...+.+ .+. -+|+.+++-++.. .+... -++...+. +-| |..+..+|....+.
T Consensus 320 l~~ly~~lg~~lk~-~~g~~~~iit~~~-~l~~~-~g~~~~~~~~l~nG~l~~~~~~~~~~~ 378 (384)
T 3ldg_A 320 VDILYNEMGETFAP-LKTWSQFILTNDT-DFEQK-FGRKADKKRKLYNGSLKVDLYQFYGQR 378 (384)
T ss_dssp HHHHHHHHHHHHTT-CTTSEEEEEESCT-THHHH-HTSCCSEEEEEEETTEEEEEEEECCCC
T ss_pred HHHHHHHHHHHHhh-CCCcEEEEEECCH-HHHHH-hCCCccceeEEecCCEEEEEEEEECCC
Confidence 2333333321 112 3588888777643 33221 12222222 223 55666666554443
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.60 E-value=4.5e-15 Score=144.79 Aligned_cols=105 Identities=22% Similarity=0.271 Sum_probs=84.3
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccE
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDl 234 (317)
++.+|||+|||||.+++.++..|+. |++||+|+.++ +.|++|++.||+.+ ++.++|+.+++... .+.||+
T Consensus 214 ~g~~VLDlg~GtG~~sl~~a~~ga~-V~avDis~~al-~~a~~n~~~ng~~~--~~~~~D~~~~l~~~------~~~fD~ 283 (393)
T 4dmg_A 214 PGERVLDVYSYVGGFALRAARKGAY-ALAVDKDLEAL-GVLDQAALRLGLRV--DIRHGEALPTLRGL------EGPFHH 283 (393)
T ss_dssp TTCEEEEESCTTTHHHHHHHHTTCE-EEEEESCHHHH-HHHHHHHHHHTCCC--EEEESCHHHHHHTC------CCCEEE
T ss_pred CCCeEEEcccchhHHHHHHHHcCCe-EEEEECCHHHH-HHHHHHHHHhCCCC--cEEEccHHHHHHHh------cCCCCE
Confidence 4889999999999999999988876 99999999999 99999999999975 46699999987543 234999
Q ss_pred EEECCCCCCc----------cHHHHHHHHHHcCCcCCCeEEE-EEeCC
Q 021116 235 MSVTPPYTAV----------DYEVLMAQISKSALVGKDSFIV-VEYPL 271 (317)
Q Consensus 235 V~~dPPy~~~----------~~~~~l~~L~~~~lLkpgG~iv-v~~~~ 271 (317)
|++|||+... .+.+++..+. ++|+|||+++ +++..
T Consensus 284 Ii~dpP~f~~~~~~~~~~~~~~~~ll~~a~--~~LkpGG~Lv~~s~s~ 329 (393)
T 4dmg_A 284 VLLDPPTLVKRPEELPAMKRHLVDLVREAL--RLLAEEGFLWLSSCSY 329 (393)
T ss_dssp EEECCCCCCSSGGGHHHHHHHHHHHHHHHH--HTEEEEEEEEEEECCT
T ss_pred EEECCCcCCCCHHHHHHHHHHHHHHHHHHH--HhcCCCCEEEEEECCC
Confidence 9999997432 2344444443 5899999998 44443
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.2e-14 Score=140.09 Aligned_cols=141 Identities=13% Similarity=0.069 Sum_probs=97.6
Q ss_pred eEEecCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHh
Q 021116 119 KKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPN 198 (317)
Q Consensus 119 ~~l~~p~~~~~rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N 198 (317)
.++...++.++.+... ..+.+++++.... ...+.+|||+|||+|.+++.++. ++.+|++||+++.++ +.|++|
T Consensus 182 ~~~~~~~~~F~Q~n~~-~~~~l~~~~~~~~----~~~~~~vLDl~cG~G~~~l~la~-~~~~V~gvd~~~~ai-~~a~~n 254 (369)
T 3bt7_A 182 MIYRQVENSFTQPNAA-MNIQMLEWALDVT----KGSKGDLLELYCGNGNFSLALAR-NFDRVLATEIAKPSV-AAAQYN 254 (369)
T ss_dssp CEEEEETTSCCCSBHH-HHHHHHHHHHHHT----TTCCSEEEEESCTTSHHHHHHGG-GSSEEEEECCCHHHH-HHHHHH
T ss_pred EEEEECCCCeecCCHH-HHHHHHHHHHHHh----hcCCCEEEEccCCCCHHHHHHHh-cCCEEEEEECCHHHH-HHHHHH
Confidence 4455555556555543 3344444432221 12367899999999999997765 556899999999999 999999
Q ss_pred HHHhCCCCceEEEEecHHHHHHHHhhh---------cCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 199 LEWTGFLDVSSIHTVRVETFLERAEQF---------VGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 199 ~~~~gl~~~v~ii~gD~~~~l~~~~~~---------~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
++.+|+. +++++++|+.+++...... ...+..||+|++|||+. +...+.++.+ .+++.++|++|
T Consensus 255 ~~~ng~~-~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~fD~Vv~dPPr~-g~~~~~~~~l-----~~~g~ivyvsc 327 (369)
T 3bt7_A 255 IAANHID-NVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRS-GLDSETEKMV-----QAYPRILYISC 327 (369)
T ss_dssp HHHTTCC-SEEEECCCSHHHHHHHSSCCCCTTGGGSCGGGCCEEEEEECCCTT-CCCHHHHHHH-----TTSSEEEEEES
T ss_pred HHHcCCC-ceEEEECCHHHHHHHHhhccccccccccccccCCCCEEEECcCcc-ccHHHHHHHH-----hCCCEEEEEEC
Confidence 9999995 5999999999887543200 00003799999999985 3445566554 25677778888
Q ss_pred CCCC
Q 021116 270 PLRT 273 (317)
Q Consensus 270 ~~~~ 273 (317)
+..+
T Consensus 328 ~p~t 331 (369)
T 3bt7_A 328 NPET 331 (369)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 7543
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=2.9e-15 Score=128.62 Aligned_cols=107 Identities=9% Similarity=-0.015 Sum_probs=81.2
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
.++.+|||+|||+|.+++.++++ ..+|+++|+++.++ +.|++|++.+++ ++++++++|+.++... .+++||
T Consensus 21 ~~~~~vLDiGcG~G~~~~~la~~-~~~v~~vD~s~~~l-~~a~~~~~~~~~-~~v~~~~~~~~~l~~~------~~~~fD 91 (185)
T 3mti_A 21 DDESIVVDATMGNGNDTAFLAGL-SKKVYAFDVQEQAL-GKTSQRLSDLGI-ENTELILDGHENLDHY------VREPIR 91 (185)
T ss_dssp CTTCEEEESCCTTSHHHHHHHTT-SSEEEEEESCHHHH-HHHHHHHHHHTC-CCEEEEESCGGGGGGT------CCSCEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEECCHHHH-HHHHHHHHHcCC-CcEEEEeCcHHHHHhh------ccCCcC
Confidence 36789999999999999998887 45899999999999 999999999998 5699999887664211 246899
Q ss_pred EEEECCCCCCc-------cHH---HHHHHHHHcCCcCCCeEEEEEeCC
Q 021116 234 YMSVTPPYTAV-------DYE---VLMAQISKSALVGKDSFIVVEYPL 271 (317)
Q Consensus 234 lV~~dPPy~~~-------~~~---~~l~~L~~~~lLkpgG~ivv~~~~ 271 (317)
+|+++++|... ..+ ..++.+. ++|+|||++++....
T Consensus 92 ~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~LkpgG~l~i~~~~ 137 (185)
T 3mti_A 92 AAIFNLGYLPSADKSVITKPHTTLEAIEKIL--DRLEVGGRLAIMIYY 137 (185)
T ss_dssp EEEEEEC-----------CHHHHHHHHHHHH--HHEEEEEEEEEEEC-
T ss_pred EEEEeCCCCCCcchhcccChhhHHHHHHHHH--HhcCCCcEEEEEEeC
Confidence 99999776432 222 2333333 589999999887653
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=2e-14 Score=122.23 Aligned_cols=122 Identities=18% Similarity=0.149 Sum_probs=101.2
Q ss_pred CCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceE
Q 021116 130 RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSS 209 (317)
Q Consensus 130 rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ 209 (317)
+++...++..+.+.+.. .++.+|||+|||+|.+++.++..+ .+|+++|+++.++ +.+++|++.+++.++++
T Consensus 15 ~~~~~~~~~~~~~~~~~-------~~~~~vldiG~G~G~~~~~l~~~~-~~v~~~D~~~~~~-~~a~~~~~~~~~~~~~~ 85 (192)
T 1l3i_A 15 GPTAMEVRCLIMCLAEP-------GKNDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAI-STTEMNLQRHGLGDNVT 85 (192)
T ss_dssp CCCCHHHHHHHHHHHCC-------CTTCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHH-HHHHHHHHHTTCCTTEE
T ss_pred CCChHHHHHHHHHhcCC-------CCCCEEEEECCCCCHHHHHHHHhc-CEEEEEECCHHHH-HHHHHHHHHcCCCcceE
Confidence 58888888888887754 467899999999999999888877 6899999999999 99999999999866799
Q ss_pred EEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCC
Q 021116 210 IHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPL 271 (317)
Q Consensus 210 ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~ 271 (317)
++++|+.+.+.. .+.||+|++++++. .....++.+. ++|+|||++++....
T Consensus 86 ~~~~d~~~~~~~-------~~~~D~v~~~~~~~--~~~~~l~~~~--~~l~~gG~l~~~~~~ 136 (192)
T 1l3i_A 86 LMEGDAPEALCK-------IPDIDIAVVGGSGG--ELQEILRIIK--DKLKPGGRIIVTAIL 136 (192)
T ss_dssp EEESCHHHHHTT-------SCCEEEEEESCCTT--CHHHHHHHHH--HTEEEEEEEEEEECB
T ss_pred EEecCHHHhccc-------CCCCCEEEECCchH--HHHHHHHHHH--HhcCCCcEEEEEecC
Confidence 999998874421 15799999998753 4567777765 489999999987654
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=7.5e-16 Score=137.87 Aligned_cols=122 Identities=17% Similarity=0.211 Sum_probs=95.0
Q ss_pred CCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceE
Q 021116 130 RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSS 209 (317)
Q Consensus 130 rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ 209 (317)
.++.+.+.+.+...+... .++.+|||+|||+|.+++.++..| .+|+++|+++.++ +.|++|++.+++.++++
T Consensus 59 ~~~~~~~~~~l~~~~~~~------~~~~~vLD~gcG~G~~~~~la~~~-~~v~~vD~s~~~~-~~a~~~~~~~~~~~~~~ 130 (241)
T 3gdh_A 59 SVTPEKIAEHIAGRVSQS------FKCDVVVDAFCGVGGNTIQFALTG-MRVIAIDIDPVKI-ALARNNAEVYGIADKIE 130 (241)
T ss_dssp HCCCHHHHHHHHHHHHHH------SCCSEEEETTCTTSHHHHHHHHTT-CEEEEEESCHHHH-HHHHHHHHHTTCGGGEE
T ss_pred ecCHHHHHHHHHHHhhhc------cCCCEEEECccccCHHHHHHHHcC-CEEEEEECCHHHH-HHHHHHHHHcCCCcCeE
Confidence 445566677777776543 368899999999999999999887 5899999999999 99999999999866799
Q ss_pred EEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCccHH-HHHHHHHHcCCcCCCeEEEEEe
Q 021116 210 IHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYE-VLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 210 ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~-~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
++++|+.++.. .++||+|++||||...... ..+..+ .++|+|||+++++.
T Consensus 131 ~~~~d~~~~~~--------~~~~D~v~~~~~~~~~~~~~~~~~~~--~~~L~pgG~~i~~~ 181 (241)
T 3gdh_A 131 FICGDFLLLAS--------FLKADVVFLSPPWGGPDYATAETFDI--RTMMSPDGFEIFRL 181 (241)
T ss_dssp EEESCHHHHGG--------GCCCSEEEECCCCSSGGGGGSSSBCT--TTSCSSCHHHHHHH
T ss_pred EEECChHHhcc--------cCCCCEEEECCCcCCcchhhhHHHHH--HhhcCCcceeHHHH
Confidence 99999988641 3689999999999753221 112112 35788888876654
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.5e-15 Score=133.37 Aligned_cols=108 Identities=16% Similarity=0.105 Sum_probs=84.4
Q ss_pred CCCCeEEEECCC-cchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCc
Q 021116 154 LRPGRWLDLYSG-TGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF 232 (317)
Q Consensus 154 ~~~~rVLDlgcG-tG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~f 232 (317)
.++.+|||+||| +|.+++.++..+..+|+++|+|+.++ +.|++|++.+++ +++++++|+..+.. ..+++|
T Consensus 54 ~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~-~~a~~~~~~~~~--~v~~~~~d~~~~~~------~~~~~f 124 (230)
T 3evz_A 54 RGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFF-EYARRNIERNNS--NVRLVKSNGGIIKG------VVEGTF 124 (230)
T ss_dssp CSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHH-HHHHHHHHHTTC--CCEEEECSSCSSTT------TCCSCE
T ss_pred CCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHH-HHHHHHHHHhCC--CcEEEeCCchhhhh------cccCce
Confidence 367899999999 99999998877345799999999999 999999999998 58999999643211 124789
Q ss_pred cEEEECCCCCCcc--------------------HHHHHHHHHHcCCcCCCeEEEEEeCCC
Q 021116 233 DYMSVTPPYTAVD--------------------YEVLMAQISKSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 233 DlV~~dPPy~~~~--------------------~~~~l~~L~~~~lLkpgG~ivv~~~~~ 272 (317)
|+|++||||.... +...++.+. ++|+|||++++..+..
T Consensus 125 D~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~LkpgG~l~~~~~~~ 182 (230)
T 3evz_A 125 DVIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAF--DHLNPGGKVALYLPDK 182 (230)
T ss_dssp EEEEECCCCC---------------CCSSSCHHHHHHHHHHG--GGEEEEEEEEEEEESC
T ss_pred eEEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHH--HHhCCCeEEEEEeccc
Confidence 9999999996421 244455443 6899999999876543
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.3e-14 Score=142.77 Aligned_cols=138 Identities=19% Similarity=0.159 Sum_probs=106.0
Q ss_pred ceEEecCCCCCCCCC---hHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHH
Q 021116 118 RKKLLSPKGMDVRPM---MEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNV 194 (317)
Q Consensus 118 G~~l~~p~~~~~rpt---~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ 194 (317)
|.++..+++.++.+. ++.+.+.+.+++.. ..+.+|||+|||+|.+++.++.. ..+|+++|+++.++ +.
T Consensus 253 g~~~~~~~~~f~q~n~~~~e~l~~~~~~~l~~-------~~~~~VLDlgcG~G~~~~~la~~-~~~V~gvD~s~~al-~~ 323 (433)
T 1uwv_A 253 GLRLTFSPRDFIQVNAGVNQKMVARALEWLDV-------QPEDRVLDLFCGMGNFTLPLATQ-AASVVGVEGVPALV-EK 323 (433)
T ss_dssp TEEEECCSSSCCCSBHHHHHHHHHHHHHHHTC-------CTTCEEEEESCTTTTTHHHHHTT-SSEEEEEESCHHHH-HH
T ss_pred CEEEEECcccccccCHHHHHHHHHHHHHhhcC-------CCCCEEEECCCCCCHHHHHHHhh-CCEEEEEeCCHHHH-HH
Confidence 788888877765543 44455556566543 35789999999999999988877 45899999999999 99
Q ss_pred HHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCCCC
Q 021116 195 LIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRT 273 (317)
Q Consensus 195 ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~~ 273 (317)
|++|++.+|+. +++++++|+.+.+... +...++||+|++||||... .++++.+.. ++|++++|++|+..+
T Consensus 324 A~~n~~~~~~~-~v~f~~~d~~~~l~~~---~~~~~~fD~Vv~dPPr~g~--~~~~~~l~~---~~p~~ivyvsc~p~t 393 (433)
T 1uwv_A 324 GQQNARLNGLQ-NVTFYHENLEEDVTKQ---PWAKNGFDKVLLDPARAGA--AGVMQQIIK---LEPIRIVYVSCNPAT 393 (433)
T ss_dssp HHHHHHHTTCC-SEEEEECCTTSCCSSS---GGGTTCCSEEEECCCTTCC--HHHHHHHHH---HCCSEEEEEESCHHH
T ss_pred HHHHHHHcCCC-ceEEEECCHHHHhhhh---hhhcCCCCEEEECCCCccH--HHHHHHHHh---cCCCeEEEEECChHH
Confidence 99999999986 5999999998753210 1123579999999999743 356676653 789999999998553
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=9.3e-15 Score=141.05 Aligned_cols=150 Identities=17% Similarity=0.144 Sum_probs=107.2
Q ss_pred CCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHhHHHhCCCCce
Q 021116 130 RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGC-SEVHFVEMDPWVVSNVLIPNLEWTGFLDVS 208 (317)
Q Consensus 130 rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga-~~V~aVDin~~al~~~ar~N~~~~gl~~~v 208 (317)
.|....++..+...+ . .++.+|||+|||+|.++++++..+. .+|+++|+|+.++ +.|++|++.+|+.+++
T Consensus 200 a~l~~~la~~l~~~~-~-------~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l-~~A~~n~~~~gl~~~i 270 (373)
T 3tm4_A 200 AHLKASIANAMIELA-E-------LDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHL-IGAEMNALAAGVLDKI 270 (373)
T ss_dssp TCCCHHHHHHHHHHH-T-------CCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHH-HHHHHHHHHTTCGGGC
T ss_pred CCccHHHHHHHHHhh-c-------CCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHH-HHHHHHHHHcCCCCce
Confidence 345677777777766 3 4678999999999999999998875 3799999999999 9999999999997789
Q ss_pred EEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCcc---------HHHHHHHHHHcCCcCCCeEEEEEeCCCCCcccc-
Q 021116 209 SIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVD---------YEVLMAQISKSALVGKDSFIVVEYPLRTDMLDT- 278 (317)
Q Consensus 209 ~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~---------~~~~l~~L~~~~lLkpgG~ivv~~~~~~~l~~~- 278 (317)
+++++|+.++. ...++||+|++||||+... |..+++.+. ++| +|.+++.......+...
T Consensus 271 ~~~~~D~~~~~-------~~~~~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~--r~l--~g~~~~i~~~~~~~~~~~ 339 (373)
T 3tm4_A 271 KFIQGDATQLS-------QYVDSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELA--KVL--EKRGVFITTEKKAIEEAI 339 (373)
T ss_dssp EEEECCGGGGG-------GTCSCEEEEEEECCCC------CCHHHHHHHHHHHHH--HHE--EEEEEEEESCHHHHHHHH
T ss_pred EEEECChhhCC-------cccCCcCEEEECCCCCcccCcchhHHHHHHHHHHHHH--HHc--CCeEEEEECCHHHHHHHH
Confidence 99999998753 1246899999999998531 344555554 356 44444434333222211
Q ss_pred -CCCeEEEEEee--cCceEEEEEe
Q 021116 279 -CGCLVKIKDRR--FGRTHLAIYG 299 (317)
Q Consensus 279 -~~~~~~~~~r~--yG~~~l~~~~ 299 (317)
..||...+.+. -|.....+|.
T Consensus 340 ~~~G~~~~~~~~~~nG~l~~~~~~ 363 (373)
T 3tm4_A 340 AENGFEIIHHRVIGHGGLMVHLYV 363 (373)
T ss_dssp HHTTEEEEEEEEEEETTEEEEEEE
T ss_pred HHcCCEEEEEEEEEcCCEEEEEEe
Confidence 25777765544 4567777775
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.9e-14 Score=125.56 Aligned_cols=131 Identities=18% Similarity=0.181 Sum_probs=97.1
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccE
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDl 234 (317)
++.+|||+|||+|.+++.+++.+..+|+++|+++.++ +.|++|++.+++.+ ++++++|+.+.. .++||+
T Consensus 60 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~-~~a~~~~~~~~~~~-v~~~~~d~~~~~---------~~~fD~ 128 (205)
T 3grz_A 60 KPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESM-TAAEENAALNGIYD-IALQKTSLLADV---------DGKFDL 128 (205)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHH-HHHHHHHHHTTCCC-CEEEESSTTTTC---------CSCEEE
T ss_pred CCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHH-HHHHHHHHHcCCCc-eEEEeccccccC---------CCCceE
Confidence 5789999999999999998888777899999999999 99999999999876 999999987642 478999
Q ss_pred EEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCCCCCccc-----cCCCeEEEEEeecCc-eEEEEEee
Q 021116 235 MSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLD-----TCGCLVKIKDRRFGR-THLAIYGP 300 (317)
Q Consensus 235 V~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~~~l~~-----~~~~~~~~~~r~yG~-~~l~~~~p 300 (317)
|++++++. .+...++.+ .++|+|||++++.........+ ...||.+.+....+. ..+.-.+|
T Consensus 129 i~~~~~~~--~~~~~l~~~--~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~~w~~~~~~~~ 196 (205)
T 3grz_A 129 IVANILAE--ILLDLIPQL--DSHLNEDGQVIFSGIDYLQLPKIEQALAENSFQIDLKMRAGRWIGLAISRK 196 (205)
T ss_dssp EEEESCHH--HHHHHGGGS--GGGEEEEEEEEEEEEEGGGHHHHHHHHHHTTEEEEEEEEETTEEEEEEEEC
T ss_pred EEECCcHH--HHHHHHHHH--HHhcCCCCEEEEEecCcccHHHHHHHHHHcCCceEEeeccCCEEEEEEecc
Confidence 99998753 233334333 3689999999987443322211 136787776655544 33333333
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=99.57 E-value=1.9e-15 Score=141.27 Aligned_cols=120 Identities=13% Similarity=0.184 Sum_probs=100.0
Q ss_pred HHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHH
Q 021116 139 AAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF 218 (317)
Q Consensus 139 alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~ 218 (317)
..|+.+.. ..+..+||+|+|||.+++|+++++ .++++||.++.++ +..++|++. .+++++++.|+...
T Consensus 82 ~yf~~l~~-------~n~~~~LDlfaGSGaLgiEaLS~~-d~~vfvE~~~~a~-~~L~~Nl~~---~~~~~V~~~D~~~~ 149 (283)
T 2oo3_A 82 EYISVIKQ-------INLNSTLSYYPGSPYFAINQLRSQ-DRLYLCELHPTEY-NFLLKLPHF---NKKVYVNHTDGVSK 149 (283)
T ss_dssp HHHHHHHH-------HSSSSSCCEEECHHHHHHHHSCTT-SEEEEECCSHHHH-HHHTTSCCT---TSCEEEECSCHHHH
T ss_pred HHHHHHHH-------hcCCCceeEeCCcHHHHHHHcCCC-CeEEEEeCCHHHH-HHHHHHhCc---CCcEEEEeCcHHHH
Confidence 56677765 246679999999999999999955 8999999999998 999999975 36799999999988
Q ss_pred HHHHhhhcCCCCCccEEEECCCCC-CccHHHHHHHHHHcCCcCCCeEEEEEeCCCC
Q 021116 219 LERAEQFVGKDGPFDYMSVTPPYT-AVDYEVLMAQISKSALVGKDSFIVVEYPLRT 273 (317)
Q Consensus 219 l~~~~~~~~~~~~fDlV~~dPPy~-~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~~ 273 (317)
+..+. ....+||+||+||||. +..++++++.+.+..++.++|++++-++...
T Consensus 150 L~~l~---~~~~~fdLVfiDPPYe~k~~~~~vl~~L~~~~~r~~~Gi~v~WYPi~~ 202 (283)
T 2oo3_A 150 LNALL---PPPEKRGLIFIDPSYERKEEYKEIPYAIKNAYSKFSTGLYCVWYPVVN 202 (283)
T ss_dssp HHHHC---SCTTSCEEEEECCCCCSTTHHHHHHHHHHHHHHHCTTSEEEEEEEESS
T ss_pred HHHhc---CCCCCccEEEECCCCCCCcHHHHHHHHHHHhCccCCCeEEEEEEeccc
Confidence 86542 2234799999999998 4688999988877678899999999988543
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.57 E-value=3.9e-14 Score=125.75 Aligned_cols=114 Identities=13% Similarity=0.139 Sum_probs=88.1
Q ss_pred CCCeEEEECCCcchHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCc
Q 021116 155 RPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF 232 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~--Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~f 232 (317)
++.+|||+|||+|..++.++.. ...+|++||+++.++ +.|++|++.+++.++++++++|+.+.+..+.. ....++|
T Consensus 58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~-~~~~~~f 135 (221)
T 3u81_A 58 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCA-AITQQMLNFAGLQDKVTILNGASQDLIPQLKK-KYDVDTL 135 (221)
T ss_dssp CCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHH-HHHHHHHHHHTCGGGEEEEESCHHHHGGGTTT-TSCCCCC
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHH-HHHHHHHHHcCCCCceEEEECCHHHHHHHHHH-hcCCCce
Confidence 5689999999999999988763 245899999999999 99999999999988899999999886543210 0011589
Q ss_pred cEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCCC
Q 021116 233 DYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 233 DlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~ 272 (317)
|+||+|.+. ..+...++.+...++|+|||++++.....
T Consensus 136 D~V~~d~~~--~~~~~~~~~~~~~~~LkpgG~lv~~~~~~ 173 (221)
T 3u81_A 136 DMVFLDHWK--DRYLPDTLLLEKCGLLRKGTVLLADNVIV 173 (221)
T ss_dssp SEEEECSCG--GGHHHHHHHHHHTTCCCTTCEEEESCCCC
T ss_pred EEEEEcCCc--ccchHHHHHHHhccccCCCeEEEEeCCCC
Confidence 999999743 24555555554347999999999876543
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.57 E-value=3.7e-15 Score=137.74 Aligned_cols=104 Identities=12% Similarity=0.055 Sum_probs=86.0
Q ss_pred CCCCeEEEECCCcchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF 232 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~f 232 (317)
.++.+|||+|||+|.+++.+++.+ ..+|+++|+|+.++ +.|++|++.+++.+ ++++++|+.++ .. .+.|
T Consensus 118 ~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av-~~a~~n~~~n~l~~-~~~~~~d~~~~-~~-------~~~~ 187 (272)
T 3a27_A 118 NENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAY-HYLCENIKLNKLNN-VIPILADNRDV-EL-------KDVA 187 (272)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHH-HHHHHHHHHTTCSS-EEEEESCGGGC-CC-------TTCE
T ss_pred CCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHH-HHHHHHHHHcCCCC-EEEEECChHHc-Cc-------cCCc
Confidence 357899999999999999988873 56899999999999 99999999999965 88999999876 21 3689
Q ss_pred cEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCCC
Q 021116 233 DYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 233 DlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~ 272 (317)
|+|++|||+. +.+.+..+. +.|+|||++++.+...
T Consensus 188 D~Vi~d~p~~---~~~~l~~~~--~~LkpgG~l~~s~~~~ 222 (272)
T 3a27_A 188 DRVIMGYVHK---THKFLDKTF--EFLKDRGVIHYHETVA 222 (272)
T ss_dssp EEEEECCCSS---GGGGHHHHH--HHEEEEEEEEEEEEEE
T ss_pred eEEEECCccc---HHHHHHHHH--HHcCCCCEEEEEEcCc
Confidence 9999999983 334444443 3689999999998755
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=6.7e-14 Score=137.79 Aligned_cols=134 Identities=16% Similarity=0.151 Sum_probs=101.3
Q ss_pred ecceEEecCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHH
Q 021116 116 ARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVL 195 (317)
Q Consensus 116 ~~G~~l~~p~~~~~rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~a 195 (317)
+.|.++..+.+.++..... ..+.+++++... .++.+|||+|||+|.+++.++..+ .+|+++|+++.++ +.|
T Consensus 258 ~~g~~f~~~~~~F~q~n~~-~~e~l~~~~~~~------~~~~~VLDlgcG~G~~sl~la~~~-~~V~gvD~s~~ai-~~A 328 (425)
T 2jjq_A 258 LDDVDYLIHPNSFFQTNSY-QAVNLVRKVSEL------VEGEKILDMYSGVGTFGIYLAKRG-FNVKGFDSNEFAI-EMA 328 (425)
T ss_dssp ETTEEEEECTTSCCCSBHH-HHHHHHHHHHHH------CCSSEEEEETCTTTHHHHHHHHTT-CEEEEEESCHHHH-HHH
T ss_pred ECCEEEEEccccccccCHH-HHHHHHHHhhcc------CCCCEEEEeeccchHHHHHHHHcC-CEEEEEECCHHHH-HHH
Confidence 3577777777666554332 233333333211 357899999999999999888765 5899999999999 999
Q ss_pred HHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCCCC
Q 021116 196 IPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRT 273 (317)
Q Consensus 196 r~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~~ 273 (317)
++|++.+|+. ++++++|+.+++ ..+||+|++|||+. +..+.+++.+. .|+|+|++|++|+..+
T Consensus 329 ~~n~~~ngl~--v~~~~~d~~~~~---------~~~fD~Vv~dPPr~-g~~~~~~~~l~---~l~p~givyvsc~p~t 391 (425)
T 2jjq_A 329 RRNVEINNVD--AEFEVASDREVS---------VKGFDTVIVDPPRA-GLHPRLVKRLN---REKPGVIVYVSCNPET 391 (425)
T ss_dssp HHHHHHHTCC--EEEEECCTTTCC---------CTTCSEEEECCCTT-CSCHHHHHHHH---HHCCSEEEEEESCHHH
T ss_pred HHHHHHcCCc--EEEEECChHHcC---------ccCCCEEEEcCCcc-chHHHHHHHHH---hcCCCcEEEEECChHH
Confidence 9999999985 999999998753 13799999999975 33455666665 4899999999998643
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.3e-13 Score=116.51 Aligned_cols=120 Identities=18% Similarity=0.168 Sum_probs=98.5
Q ss_pred CCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceE
Q 021116 130 RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSS 209 (317)
Q Consensus 130 rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ 209 (317)
+++...+...+.+.+.. .++.+|||+|||+|.+++.++. +..+|+++|+++.++ +.+++|++.+++. +++
T Consensus 17 ~~~~~~~~~~~~~~~~~-------~~~~~vLdiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~-~~a~~~~~~~~~~-~~~ 86 (183)
T 2yxd_A 17 PITKEEIRAVSIGKLNL-------NKDDVVVDVGCGSGGMTVEIAK-RCKFVYAIDYLDGAI-EVTKQNLAKFNIK-NCQ 86 (183)
T ss_dssp CCCCHHHHHHHHHHHCC-------CTTCEEEEESCCCSHHHHHHHT-TSSEEEEEECSHHHH-HHHHHHHHHTTCC-SEE
T ss_pred CcCHHHHHHHHHHHcCC-------CCCCEEEEeCCCCCHHHHHHHh-cCCeEEEEeCCHHHH-HHHHHHHHHcCCC-cEE
Confidence 67778888888888753 4678999999999999998877 556899999999999 9999999999984 599
Q ss_pred EEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCCCCC
Q 021116 210 IHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTD 274 (317)
Q Consensus 210 ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~~~ 274 (317)
++++|+.+.+. .++||+|+++++ ......++.+.. + |||++++.......
T Consensus 87 ~~~~d~~~~~~--------~~~~D~i~~~~~---~~~~~~l~~~~~--~--~gG~l~~~~~~~~~ 136 (183)
T 2yxd_A 87 IIKGRAEDVLD--------KLEFNKAFIGGT---KNIEKIIEILDK--K--KINHIVANTIVLEN 136 (183)
T ss_dssp EEESCHHHHGG--------GCCCSEEEECSC---SCHHHHHHHHHH--T--TCCEEEEEESCHHH
T ss_pred EEECCcccccc--------CCCCcEEEECCc---ccHHHHHHHHhh--C--CCCEEEEEeccccc
Confidence 99999987321 268999999988 467778887764 3 99999998764443
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=2.7e-14 Score=135.97 Aligned_cols=98 Identities=12% Similarity=0.137 Sum_probs=82.2
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccE
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDl 234 (317)
++.+|||+|||+|.+++. ++ ++.+|+++|+|+.++ +.|++|++.|++.++++++++|+.+++ .+||+
T Consensus 195 ~~~~VLDlg~G~G~~~l~-a~-~~~~V~~vD~s~~ai-~~a~~n~~~n~l~~~v~~~~~D~~~~~----------~~fD~ 261 (336)
T 2yx1_A 195 LNDVVVDMFAGVGPFSIA-CK-NAKKIYAIDINPHAI-ELLKKNIKLNKLEHKIIPILSDVREVD----------VKGNR 261 (336)
T ss_dssp TTCEEEETTCTTSHHHHH-TT-TSSEEEEEESCHHHH-HHHHHHHHHTTCTTTEEEEESCGGGCC----------CCEEE
T ss_pred CCCEEEEccCccCHHHHh-cc-CCCEEEEEECCHHHH-HHHHHHHHHcCCCCcEEEEECChHHhc----------CCCcE
Confidence 578999999999999999 76 677999999999999 999999999999777999999998763 57999
Q ss_pred EEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 235 MSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 235 V~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
|++|||+... ++++.+. ++|++||++++...
T Consensus 262 Vi~dpP~~~~---~~l~~~~--~~L~~gG~l~~~~~ 292 (336)
T 2yx1_A 262 VIMNLPKFAH---KFIDKAL--DIVEEGGVIHYYTI 292 (336)
T ss_dssp EEECCTTTGG---GGHHHHH--HHEEEEEEEEEEEE
T ss_pred EEECCcHhHH---HHHHHHH--HHcCCCCEEEEEEe
Confidence 9999997543 3444443 36899998877543
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.4e-13 Score=121.54 Aligned_cols=110 Identities=15% Similarity=0.108 Sum_probs=89.1
Q ss_pred CCCeEEEECCCcchHHHHHHHcC--CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCc
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRG--CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF 232 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~G--a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~f 232 (317)
++.+|||+|||+|..++.++..- ..+|+++|+++.++ +.|++|++.+|+.++++++.+|+.+.+..+.. ...++|
T Consensus 58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~--~~~~~f 134 (223)
T 3duw_A 58 GARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHA-DIARSNIERANLNDRVEVRTGLALDSLQQIEN--EKYEPF 134 (223)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHH-HHHHHHHHHTTCTTTEEEEESCHHHHHHHHHH--TTCCCC
T ss_pred CCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHH-HHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHh--cCCCCc
Confidence 57899999999999999887751 34899999999999 99999999999988899999999887654421 011579
Q ss_pred cEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCC
Q 021116 233 DYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPL 271 (317)
Q Consensus 233 DlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~ 271 (317)
|+||+|++. ..+...++.+. ++|+|||++++....
T Consensus 135 D~v~~d~~~--~~~~~~l~~~~--~~L~pgG~lv~~~~~ 169 (223)
T 3duw_A 135 DFIFIDADK--QNNPAYFEWAL--KLSRPGTVIIGDNVV 169 (223)
T ss_dssp SEEEECSCG--GGHHHHHHHHH--HTCCTTCEEEEESCS
T ss_pred CEEEEcCCc--HHHHHHHHHHH--HhcCCCcEEEEeCCC
Confidence 999999863 35677777765 489999999987553
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.54 E-value=8.5e-15 Score=126.87 Aligned_cols=108 Identities=12% Similarity=0.032 Sum_probs=85.8
Q ss_pred CCCCeEEEECCCcchHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCC
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGP 231 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~--Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~ 231 (317)
.++.+|||+|||+|.+++.++++ +..+|+++|+++.++ +.|++|++.+++.++++++++|+.++... ..++
T Consensus 21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~~~~~------~~~~ 93 (197)
T 3eey_A 21 KEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAI-ANTTKKLTDLNLIDRVTLIKDGHQNMDKY------IDCP 93 (197)
T ss_dssp CTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHH-HHHHHHHHHTTCGGGEEEECSCGGGGGGT------CCSC
T ss_pred CCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHHHHcCCCCCeEEEECCHHHHhhh------ccCC
Confidence 35789999999999999988776 345899999999999 99999999999877799999998776421 2478
Q ss_pred ccEEEECCCCCCc----------cHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 232 FDYMSVTPPYTAV----------DYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 232 fDlV~~dPPy~~~----------~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
||+|++|+||... .....++.+. ++|+|||++++...
T Consensus 94 fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~Lk~gG~l~~~~~ 140 (197)
T 3eey_A 94 VKAVMFNLGYLPSGDHSISTRPETTIQALSKAM--ELLVTGGIITVVIY 140 (197)
T ss_dssp EEEEEEEESBCTTSCTTCBCCHHHHHHHHHHHH--HHEEEEEEEEEEEC
T ss_pred ceEEEEcCCcccCcccccccCcccHHHHHHHHH--HhCcCCCEEEEEEc
Confidence 9999999988221 1234455444 58999999998763
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=5e-14 Score=126.50 Aligned_cols=125 Identities=14% Similarity=0.115 Sum_probs=98.5
Q ss_pred CCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceE
Q 021116 130 RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSS 209 (317)
Q Consensus 130 rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ 209 (317)
.|........+++.+... .++.+|||+|||+|.+++.++..+..+|+++|+++.++ +.+++|++.+|+.++++
T Consensus 27 ~~~~~~~~~~~l~~l~~~------~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~-~~a~~~~~~~~~~~~~~ 99 (257)
T 3f4k_A 27 GPGSPEATRKAVSFINEL------TDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFI-EIFNENAVKANCADRVK 99 (257)
T ss_dssp SSCCHHHHHHHHTTSCCC------CTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHH-HHHHHHHHHTTCTTTEE
T ss_pred CCCCHHHHHHHHHHHhcC------CCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHH-HHHHHHHHHcCCCCceE
Confidence 455555555555554321 35789999999999999998887655899999999999 99999999999988899
Q ss_pred EEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 210 IHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 210 ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
++++|+.++ +..+++||+|+++......+....++.+. ++|+|||++++...
T Consensus 100 ~~~~d~~~~-------~~~~~~fD~v~~~~~l~~~~~~~~l~~~~--~~L~pgG~l~~~~~ 151 (257)
T 3f4k_A 100 GITGSMDNL-------PFQNEELDLIWSEGAIYNIGFERGMNEWS--KYLKKGGFIAVSEA 151 (257)
T ss_dssp EEECCTTSC-------SSCTTCEEEEEEESCSCCCCHHHHHHHHH--TTEEEEEEEEEEEE
T ss_pred EEECChhhC-------CCCCCCEEEEEecChHhhcCHHHHHHHHH--HHcCCCcEEEEEEe
Confidence 999998653 22357899999987654446677777765 69999999998763
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.54 E-value=6.5e-14 Score=125.67 Aligned_cols=105 Identities=12% Similarity=0.123 Sum_probs=88.5
Q ss_pred CCCeEEEECCCcchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHH-HHhhhcCCCCCc
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE-RAEQFVGKDGPF 232 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~-~~~~~~~~~~~f 232 (317)
++.+|||+|||+|..++.++... ..+|+++|+++.++ +.|++|++.+++.++++++.+|+.+.+. .. .++|
T Consensus 71 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~------~~~f 143 (232)
T 3ntv_A 71 NVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMI-QYAKQNLATYHFENQVRIIEGNALEQFENVN------DKVY 143 (232)
T ss_dssp TCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHH-HHHHHHHHHTTCTTTEEEEESCGGGCHHHHT------TSCE
T ss_pred CCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHHHHcCCCCcEEEEECCHHHHHHhhc------cCCc
Confidence 57899999999999999887742 46899999999999 9999999999998789999999988765 43 3789
Q ss_pred cEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 233 DYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 233 DlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
|+||+|.+. ..+...++.+. ++|+|||++++...
T Consensus 144 D~V~~~~~~--~~~~~~l~~~~--~~LkpgG~lv~d~~ 177 (232)
T 3ntv_A 144 DMIFIDAAK--AQSKKFFEIYT--PLLKHQGLVITDNV 177 (232)
T ss_dssp EEEEEETTS--SSHHHHHHHHG--GGEEEEEEEEEECT
T ss_pred cEEEEcCcH--HHHHHHHHHHH--HhcCCCeEEEEeeC
Confidence 999999753 35777777775 58999999998543
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.54 E-value=4.5e-14 Score=119.57 Aligned_cols=123 Identities=15% Similarity=0.054 Sum_probs=95.6
Q ss_pred CCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHhHHHhCCCCce
Q 021116 130 RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVS 208 (317)
Q Consensus 130 rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~-Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v 208 (317)
..|...++..+++.+.. .++.+|||+|||+|.+++.++.. +..+|+++|+++.++ +.|++|++.+++.+++
T Consensus 7 ~~t~~~~~~~~~~~~~~-------~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~-~~a~~~~~~~~~~~~~ 78 (178)
T 3hm2_A 7 QLTKQHVRALAISALAP-------KPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERR-ERILSNAINLGVSDRI 78 (178)
T ss_dssp CSHHHHHHHHHHHHHCC-------CTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHH-HHHHHHHHTTTCTTSE
T ss_pred cccHHHHHHHHHHHhcc-------cCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHH-HHHHHHHHHhCCCCCE
Confidence 34566777778777754 46789999999999999988776 345899999999999 9999999999987678
Q ss_pred EEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCCC
Q 021116 209 SIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 209 ~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~ 272 (317)
++++|+.+.+.. ..++||+|+++.+... ...++.+. ++|+|||++++.....
T Consensus 79 -~~~~d~~~~~~~------~~~~~D~i~~~~~~~~---~~~l~~~~--~~L~~gG~l~~~~~~~ 130 (178)
T 3hm2_A 79 -AVQQGAPRAFDD------VPDNPDVIFIGGGLTA---PGVFAAAW--KRLPVGGRLVANAVTV 130 (178)
T ss_dssp -EEECCTTGGGGG------CCSCCSEEEECC-TTC---TTHHHHHH--HTCCTTCEEEEEECSH
T ss_pred -EEecchHhhhhc------cCCCCCEEEECCcccH---HHHHHHHH--HhcCCCCEEEEEeecc
Confidence 888998654321 1268999999987643 45566655 4899999999887644
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.54 E-value=1.3e-13 Score=121.77 Aligned_cols=111 Identities=14% Similarity=0.137 Sum_probs=89.4
Q ss_pred CCCeEEEECCCcchHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCc
Q 021116 155 RPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF 232 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~-G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~f 232 (317)
++.+|||+|||+|..++.++.. + ..+|+++|+++.++ +.|++|++.+|+.++++++++|+.+.+..... ....++|
T Consensus 64 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-~~~~~~f 141 (225)
T 3tr6_A 64 QAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKST-ALAKEYWEKAGLSDKIGLRLSPAKDTLAELIH-AGQAWQY 141 (225)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHH-HHHHHHHHHTTCTTTEEEEESCHHHHHHHHHT-TTCTTCE
T ss_pred CCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHH-HHHHHHHHHCCCCCceEEEeCCHHHHHHHhhh-ccCCCCc
Confidence 4679999999999999988775 2 46899999999999 99999999999988899999999887655420 0011689
Q ss_pred cEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCC
Q 021116 233 DYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPL 271 (317)
Q Consensus 233 DlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~ 271 (317)
|+|++|++. ..+...++.+. ++|+|||++++....
T Consensus 142 D~v~~~~~~--~~~~~~l~~~~--~~L~pgG~lv~~~~~ 176 (225)
T 3tr6_A 142 DLIYIDADK--ANTDLYYEESL--KLLREGGLIAVDNVL 176 (225)
T ss_dssp EEEEECSCG--GGHHHHHHHHH--HHEEEEEEEEEECSS
T ss_pred cEEEECCCH--HHHHHHHHHHH--HhcCCCcEEEEeCCC
Confidence 999999863 35677777765 489999999987543
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.53 E-value=4.1e-15 Score=134.40 Aligned_cols=121 Identities=14% Similarity=0.040 Sum_probs=83.0
Q ss_pred eeecceEEecCCCCC-CC----CChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcC-CCEEEEEeCC
Q 021116 114 GKARRKKLLSPKGMD-VR----PMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMD 187 (317)
Q Consensus 114 G~~~G~~l~~p~~~~-~r----pt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~G-a~~V~aVDin 187 (317)
..|.|.++..+.+.. .+ |.+..+...+++.+... ..++.+|||+|||+|.+++.++++. ..+|+++|++
T Consensus 24 ~~~~~~~~~~~~~~~~p~~~~r~~~~~~~~~~~~~~~~~-----~~~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s 98 (254)
T 2h00_A 24 REDFGLSIDIPLERLIPTVPLRLNYIHWVEDLIGHQDSD-----KSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVD 98 (254)
T ss_dssp HHHHCCCCCCCTTSCCCCHHHHHHHHHHHHHHHCCCCGG-----GCCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESC
T ss_pred HHcCCeeeecCccccCCCccchHHHHHHHHHHHhhcccc-----CCCCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECC
Confidence 345677777766543 22 33333333333222110 0146799999999999999877652 3589999999
Q ss_pred HHHHHHHHHHhHHHhCCCCceEEEEecHHH-HHHHHhhhcCC-CCCccEEEECCCCCC
Q 021116 188 PWVVSNVLIPNLEWTGFLDVSSIHTVRVET-FLERAEQFVGK-DGPFDYMSVTPPYTA 243 (317)
Q Consensus 188 ~~al~~~ar~N~~~~gl~~~v~ii~gD~~~-~l~~~~~~~~~-~~~fDlV~~dPPy~~ 243 (317)
+.++ +.|++|++.+++.++++++++|+.+ +...+ +.. +++||+|++||||..
T Consensus 99 ~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~---~~~~~~~fD~i~~npp~~~ 152 (254)
T 2h00_A 99 DMCF-NYAKKNVEQNNLSDLIKVVKVPQKTLLMDAL---KEESEIIYDFCMCNPPFFA 152 (254)
T ss_dssp HHHH-HHHHHHHHHTTCTTTEEEEECCTTCSSTTTS---TTCCSCCBSEEEECCCCC-
T ss_pred HHHH-HHHHHHHHHcCCCccEEEEEcchhhhhhhhh---hcccCCcccEEEECCCCcc
Confidence 9999 9999999999998889999999765 22111 000 157999999999964
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.53 E-value=4.4e-14 Score=129.71 Aligned_cols=142 Identities=12% Similarity=0.030 Sum_probs=105.5
Q ss_pred eeeecceEEecCCCC---CCCCChHHHHHHHHHHH-----------hhcCCCCCCCCCCeEEEECCCcchHHHHHHHc-C
Q 021116 113 GGKARRKKLLSPKGM---DVRPMMEVVKGAAFDIL-----------QSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-G 177 (317)
Q Consensus 113 ~G~~~G~~l~~p~~~---~~rpt~~~v~~alf~~L-----------~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~-G 177 (317)
.|...|..+.++.+. ..||+++.+.+.+.... ..... ..++.+|||+|||+|.+++.+++. +
T Consensus 59 ~g~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~~~~VLDiG~G~G~~~~~la~~~~ 135 (277)
T 1o54_A 59 FEKGPGEIIRTSAGKKGYILIPSLIDEIMNMKRRTQIVYPKDSSFIAMMLD---VKEGDRIIDTGVGSGAMCAVLARAVG 135 (277)
T ss_dssp TTSCTTCEEECTTCCEEEEECCCHHHHHHTCCC-CCCCCHHHHHHHHHHTT---CCTTCEEEEECCTTSHHHHHHHHHTT
T ss_pred cCCCCCcEEEEcCCcEEEEeCCCHHHHHhhccccCCccCHHHHHHHHHHhC---CCCCCEEEEECCcCCHHHHHHHHHhC
Confidence 356678888887764 24888887665432211 00000 135789999999999999998876 5
Q ss_pred -CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCccHHHHHHHHHHc
Q 021116 178 -CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKS 256 (317)
Q Consensus 178 -a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~ 256 (317)
..+|+++|+++.++ +.|++|++.+++.++++++.+|+.+.+ ..+.||+|++|+|... ..++.+.
T Consensus 136 ~~~~v~~vD~s~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~~~~~D~V~~~~~~~~----~~l~~~~-- 200 (277)
T 1o54_A 136 SSGKVFAYEKREEFA-KLAESNLTKWGLIERVTIKVRDISEGF--------DEKDVDALFLDVPDPW----NYIDKCW-- 200 (277)
T ss_dssp TTCEEEEECCCHHHH-HHHHHHHHHTTCGGGEEEECCCGGGCC--------SCCSEEEEEECCSCGG----GTHHHHH--
T ss_pred CCcEEEEEECCHHHH-HHHHHHHHHcCCCCCEEEEECCHHHcc--------cCCccCEEEECCcCHH----HHHHHHH--
Confidence 46899999999999 999999999998667999999987752 2367999999998643 3344443
Q ss_pred CCcCCCeEEEEEeCCC
Q 021116 257 ALVGKDSFIVVEYPLR 272 (317)
Q Consensus 257 ~lLkpgG~ivv~~~~~ 272 (317)
++|+|||++++..+..
T Consensus 201 ~~L~pgG~l~~~~~~~ 216 (277)
T 1o54_A 201 EALKGGGRFATVCPTT 216 (277)
T ss_dssp HHEEEEEEEEEEESSH
T ss_pred HHcCCCCEEEEEeCCH
Confidence 3689999999988754
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.53 E-value=1.8e-13 Score=119.36 Aligned_cols=118 Identities=22% Similarity=0.209 Sum_probs=89.0
Q ss_pred CCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceE
Q 021116 130 RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSS 209 (317)
Q Consensus 130 rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ 209 (317)
.++...+.+.+...+.... ..++.+|||+|||+|.+++.++..|..+|+++|+|+.++ +.+++|++.+++ +++
T Consensus 28 ~~~~~~~~~~l~~~~~~~~----~~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~-~~a~~~~~~~~~--~~~ 100 (207)
T 1wy7_A 28 YRTPGNAASELLWLAYSLG----DIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAV-DVLIENLGEFKG--KFK 100 (207)
T ss_dssp CCCCHHHHHHHHHHHHHTT----SSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHH-HHHHHHTGGGTT--SEE
T ss_pred ecCchHHHHHHHHHHHHcC----CCCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHH-HHHHHHHHHcCC--CEE
Confidence 4455666666666554321 146789999999999999998888877899999999999 999999999987 599
Q ss_pred EEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCc---cHHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 210 IHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAV---DYEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 210 ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~---~~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
++++|+.++ ..+||+|++||||+.. .....++.+.. ++ |+ +++.+
T Consensus 101 ~~~~d~~~~----------~~~~D~v~~~~p~~~~~~~~~~~~l~~~~~--~l--~~-~~~~~ 148 (207)
T 1wy7_A 101 VFIGDVSEF----------NSRVDIVIMNPPFGSQRKHADRPFLLKAFE--IS--DV-VYSIH 148 (207)
T ss_dssp EEESCGGGC----------CCCCSEEEECCCCSSSSTTTTHHHHHHHHH--HC--SE-EEEEE
T ss_pred EEECchHHc----------CCCCCEEEEcCCCccccCCchHHHHHHHHH--hc--Cc-EEEEE
Confidence 999998774 2589999999999753 23445555543 34 55 44444
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.52 E-value=5.2e-14 Score=126.36 Aligned_cols=104 Identities=10% Similarity=0.119 Sum_probs=86.2
Q ss_pred CCeEEEECCCcchHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHhHHHhCCC-CceEEEEecHHHHHHHHhhhcCCCCCc
Q 021116 156 PGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFL-DVSSIHTVRVETFLERAEQFVGKDGPF 232 (317)
Q Consensus 156 ~~rVLDlgcGtG~l~Ieaas~-G-a~~V~aVDin~~al~~~ar~N~~~~gl~-~~v~ii~gD~~~~l~~~~~~~~~~~~f 232 (317)
+.+|||+|||+|..++.++.. + ..+|++||+++.++ +.|++|++.+|+. ++++++.+|+.+++..+ ..++|
T Consensus 57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~-~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~-----~~~~f 130 (221)
T 3dr5_A 57 STGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQ-RQAKALFREAGYSPSRVRFLLSRPLDVMSRL-----ANDSY 130 (221)
T ss_dssp CCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHH-HHHHHHHHHTTCCGGGEEEECSCHHHHGGGS-----CTTCE
T ss_pred CCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHH-HHHHHHHHHcCCCcCcEEEEEcCHHHHHHHh-----cCCCc
Confidence 449999999999999987763 2 45899999999999 9999999999998 78999999998876432 14789
Q ss_pred cEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 233 DYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 233 DlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
|+||+|.+. ..+...++.+. ++|+|||++++..
T Consensus 131 D~V~~d~~~--~~~~~~l~~~~--~~LkpGG~lv~dn 163 (221)
T 3dr5_A 131 QLVFGQVSP--MDLKALVDAAW--PLLRRGGALVLAD 163 (221)
T ss_dssp EEEEECCCT--TTHHHHHHHHH--HHEEEEEEEEETT
T ss_pred CeEEEcCcH--HHHHHHHHHHH--HHcCCCcEEEEeC
Confidence 999999854 45677777665 4899999999854
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.52 E-value=1.3e-13 Score=119.99 Aligned_cols=139 Identities=16% Similarity=0.068 Sum_probs=101.9
Q ss_pred CCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHhHHHhCCCCce
Q 021116 130 RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVS 208 (317)
Q Consensus 130 rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~-Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v 208 (317)
||.++.+.+.+++.+.... ..++.+|||+|||+|.+++.++.. +..+|+++|+++.++ +.+++|++.+++.+ +
T Consensus 44 ~~~~~~~~~~~~~~l~~~~----~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~-~~a~~~~~~~~~~~-v 117 (207)
T 1jsx_A 44 RDPNEMLVRHILDSIVVAP----YLQGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRV-RFLRQVQHELKLEN-I 117 (207)
T ss_dssp ----CHHHHHHHHHHHHGG----GCCSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHH-HHHHHHHHHTTCSS-E
T ss_pred CCHHHHHHHHHHhhhhhhh----hcCCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHH-HHHHHHHHHcCCCC-e
Confidence 6766777777777775420 024789999999999999988765 345899999999999 99999999999876 9
Q ss_pred EEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCCCC--CccccCCCeEEEE
Q 021116 209 SIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRT--DMLDTCGCLVKIK 286 (317)
Q Consensus 209 ~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~~--~l~~~~~~~~~~~ 286 (317)
+++++|+.++. ..++||+|+++. ...+...++.+. ++|+|||++++...... .+.....+|...+
T Consensus 118 ~~~~~d~~~~~--------~~~~~D~i~~~~---~~~~~~~l~~~~--~~L~~gG~l~~~~~~~~~~~~~~~~~g~~~~~ 184 (207)
T 1jsx_A 118 EPVQSRVEEFP--------SEPPFDGVISRA---FASLNDMVSWCH--HLPGEQGRFYALKGQMPEDEIALLPEEYQVES 184 (207)
T ss_dssp EEEECCTTTSC--------CCSCEEEEECSC---SSSHHHHHHHHT--TSEEEEEEEEEEESSCCHHHHHTSCTTEEEEE
T ss_pred EEEecchhhCC--------ccCCcCEEEEec---cCCHHHHHHHHH--HhcCCCcEEEEEeCCCchHHHHHHhcCCceee
Confidence 99999987642 136899999874 235667777664 69999999999876543 2222334677655
Q ss_pred E
Q 021116 287 D 287 (317)
Q Consensus 287 ~ 287 (317)
.
T Consensus 185 ~ 185 (207)
T 1jsx_A 185 V 185 (207)
T ss_dssp E
T ss_pred e
Confidence 3
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=1e-14 Score=141.71 Aligned_cols=103 Identities=17% Similarity=0.134 Sum_probs=83.4
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
.++++|||+|||||.+++.|++.|+.+|++||.++ ++ +.|+++++.||+.++|+++++|+.++. ..++||
T Consensus 82 ~~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~-~~-~~a~~~~~~n~~~~~i~~i~~~~~~~~--------lpe~~D 151 (376)
T 4hc4_A 82 LRGKTVLDVGAGTGILSIFCAQAGARRVYAVEASA-IW-QQAREVVRFNGLEDRVHVLPGPVETVE--------LPEQVD 151 (376)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-TH-HHHHHHHHHTTCTTTEEEEESCTTTCC--------CSSCEE
T ss_pred cCCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChH-HH-HHHHHHHHHcCCCceEEEEeeeeeeec--------CCcccc
Confidence 46899999999999999999999999999999997 66 899999999999999999999998752 136899
Q ss_pred EEEECCCCCC----ccHHHHHHHHHHcCCcCCCeEEEEE
Q 021116 234 YMSVTPPYTA----VDYEVLMAQISKSALVGKDSFIVVE 268 (317)
Q Consensus 234 lV~~dPPy~~----~~~~~~l~~L~~~~lLkpgG~ivv~ 268 (317)
+|++++.-.. +.++.++.... ++|+|||+++-.
T Consensus 152 vivsE~~~~~l~~e~~l~~~l~a~~--r~Lkp~G~~iP~ 188 (376)
T 4hc4_A 152 AIVSEWMGYGLLHESMLSSVLHART--KWLKEGGLLLPA 188 (376)
T ss_dssp EEECCCCBTTBTTTCSHHHHHHHHH--HHEEEEEEEESC
T ss_pred EEEeecccccccccchhhhHHHHHH--hhCCCCceECCc
Confidence 9999764211 23444444433 589999998743
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=99.52 E-value=1.5e-13 Score=126.81 Aligned_cols=111 Identities=16% Similarity=0.159 Sum_probs=85.9
Q ss_pred CCCCeEEEECCCcchHHHHHHH--cCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCC
Q 021116 154 LRPGRWLDLYSGTGSVGIEAIS--RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGP 231 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas--~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~ 231 (317)
.++.+|||+|||+|..++.++. .+..+|+++|+++.++ +.+++|++.+|+. +++++++|+.++..... ...+.
T Consensus 82 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l-~~~~~~~~~~g~~-~v~~~~~D~~~~~~~~~---~~~~~ 156 (274)
T 3ajd_A 82 REDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRT-KALKSNINRMGVL-NTIIINADMRKYKDYLL---KNEIF 156 (274)
T ss_dssp CTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHH-HHHHHHHHHTTCC-SEEEEESCHHHHHHHHH---HTTCC
T ss_pred CCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHH-HHHHHHHHHhCCC-cEEEEeCChHhcchhhh---hcccc
Confidence 3678999999999999988776 3446899999999999 9999999999986 59999999988754220 01368
Q ss_pred ccEEEECCCCCC-c------------------cHHHHHHHHHHcCCcCCCeEEEEEeCC
Q 021116 232 FDYMSVTPPYTA-V------------------DYEVLMAQISKSALVGKDSFIVVEYPL 271 (317)
Q Consensus 232 fDlV~~dPPy~~-~------------------~~~~~l~~L~~~~lLkpgG~ivv~~~~ 271 (317)
||+|++||||.. + ....+++.+. ++|+|||++++++-+
T Consensus 157 fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~--~~LkpgG~lv~stcs 213 (274)
T 3ajd_A 157 FDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGI--DLLKKDGELVYSTCS 213 (274)
T ss_dssp EEEEEEEECCC------------HHHHTGGGTCHHHHHHHHH--HHEEEEEEEEEEESC
T ss_pred CCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHH--HhCCCCCEEEEEECC
Confidence 999999999853 1 1244455443 489999999886543
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.4e-14 Score=137.93 Aligned_cols=136 Identities=14% Similarity=0.163 Sum_probs=105.3
Q ss_pred ceEEecCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCC-CEEEEEeCCHHHHHHHHH
Q 021116 118 RKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGC-SEVHFVEMDPWVVSNVLI 196 (317)
Q Consensus 118 G~~l~~p~~~~~rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga-~~V~aVDin~~al~~~ar 196 (317)
+..+...++.+.++..+...+.+.+.+.. ..+.+|||+|||+|.+++.++..+. .+|+++|+++.++ +.++
T Consensus 166 ~~~~~~~~gvf~~~~~d~~~~~ll~~l~~-------~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l-~~a~ 237 (343)
T 2pjd_A 166 GLTVKTLPGVFSRDGLDVGSQLLLSTLTP-------HTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAV-EASR 237 (343)
T ss_dssp TEEEEECTTCTTSSSCCHHHHHHHHHSCT-------TCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHH-HHHH
T ss_pred ceEEEecCCccCCCCCcHHHHHHHHhcCc-------CCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHH-HHHH
Confidence 45566677777777777777777777643 2467999999999999999888764 3799999999999 9999
Q ss_pred HhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCcc---H---HHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 197 PNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVD---Y---EVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 197 ~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~---~---~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
+|++.+++. ++++.+|+.++. .++||+|+++|||+.+. . ...++.+ .++|+|||.+++..+
T Consensus 238 ~~~~~~~~~--~~~~~~d~~~~~---------~~~fD~Iv~~~~~~~g~~~~~~~~~~~l~~~--~~~LkpgG~l~i~~~ 304 (343)
T 2pjd_A 238 ATLAANGVE--GEVFASNVFSEV---------KGRFDMIISNPPFHDGMQTSLDAAQTLIRGA--VRHLNSGGELRIVAN 304 (343)
T ss_dssp HHHHHTTCC--CEEEECSTTTTC---------CSCEEEEEECCCCCSSSHHHHHHHHHHHHHH--GGGEEEEEEEEEEEE
T ss_pred HHHHHhCCC--CEEEEccccccc---------cCCeeEEEECCCcccCccCCHHHHHHHHHHH--HHhCCCCcEEEEEEc
Confidence 999998875 567899987642 46899999999997531 2 3334443 479999999999877
Q ss_pred CCCC
Q 021116 271 LRTD 274 (317)
Q Consensus 271 ~~~~ 274 (317)
....
T Consensus 305 ~~~~ 308 (343)
T 2pjd_A 305 AFLP 308 (343)
T ss_dssp TTSS
T ss_pred CCCC
Confidence 5543
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.51 E-value=7.9e-14 Score=129.32 Aligned_cols=153 Identities=13% Similarity=0.083 Sum_probs=105.4
Q ss_pred cccceEEEEeeeecceEEecCCCC-CCCCChHHHHHHHHHHH-hhcCCCCCCCCCCeEEEECCCcchHHHHHHHc-CCCE
Q 021116 104 TTHRLLQVLGGKARRKKLLSPKGM-DVRPMMEVVKGAAFDIL-QSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-GCSE 180 (317)
Q Consensus 104 ~~~~il~ii~G~~~G~~l~~p~~~-~~rpt~~~v~~alf~~L-~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~-Ga~~ 180 (317)
...+-++++.+...|+.+..+... +.........+.++... ... ..+.+|||+|||+|.++.++++. +..+
T Consensus 28 s~~~~i~v~~~~~~g~~L~ldg~~q~~~~de~~y~e~l~~~~l~~~------~~~~~VLdiG~G~G~~~~~l~~~~~~~~ 101 (275)
T 1iy9_A 28 TEFQHLEMVETEEFGNMLFLDGMVMTSEKDEFVYHEMVAHVPLFTH------PNPEHVLVVGGGDGGVIREILKHPSVKK 101 (275)
T ss_dssp CSSCEEEEEEETTTEEEEEETTEEEEETTTHHHHHHHHHHHHHHHS------SSCCEEEEESCTTCHHHHHHTTCTTCSE
T ss_pred CCCceEEEEEcCCCCEEEEECCEEeecccchhHHHHHHHHHHHhhC------CCCCEEEEECCchHHHHHHHHhCCCCce
Confidence 334556676666666766655211 11111112445555432 111 35789999999999999999887 6679
Q ss_pred EEEEeCCHHHHHHHHHHhHHHh--CC-CCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCcc-----HHHHHHH
Q 021116 181 VHFVEMDPWVVSNVLIPNLEWT--GF-LDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVD-----YEVLMAQ 252 (317)
Q Consensus 181 V~aVDin~~al~~~ar~N~~~~--gl-~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~-----~~~~l~~ 252 (317)
|++||+|+.++ +.|++|+... ++ .++++++.+|+.+++... .++||+|++|+|+.... ..+.++.
T Consensus 102 v~~vEid~~~v-~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~------~~~fD~Ii~d~~~~~~~~~~l~~~~~~~~ 174 (275)
T 1iy9_A 102 ATLVDIDGKVI-EYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKS------ENQYDVIMVDSTEPVGPAVNLFTKGFYAG 174 (275)
T ss_dssp EEEEESCHHHH-HHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTC------CSCEEEEEESCSSCCSCCCCCSTTHHHHH
T ss_pred EEEEECCHHHH-HHHHHHhHhhccccCCCceEEEECcHHHHHhhC------CCCeeEEEECCCCCCCcchhhhHHHHHHH
Confidence 99999999999 9999998652 34 357999999999887532 46899999999864221 1455666
Q ss_pred HHHcCCcCCCeEEEEEeCC
Q 021116 253 ISKSALVGKDSFIVVEYPL 271 (317)
Q Consensus 253 L~~~~lLkpgG~ivv~~~~ 271 (317)
+. ++|+|||++++....
T Consensus 175 ~~--~~L~pgG~lv~~~~~ 191 (275)
T 1iy9_A 175 IA--KALKEDGIFVAQTDN 191 (275)
T ss_dssp HH--HHEEEEEEEEEECCC
T ss_pred HH--HhcCCCcEEEEEcCC
Confidence 54 479999999998643
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.51 E-value=3.1e-13 Score=122.70 Aligned_cols=108 Identities=14% Similarity=0.087 Sum_probs=88.7
Q ss_pred CCCeEEEECCCcchHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCc
Q 021116 155 RPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF 232 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~-G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~f 232 (317)
++.+|||+|||+|..++.++.. + ..+|+++|+++.++ +.|++|++.+|+.++++++.+|+.+.+.... ..++|
T Consensus 63 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~-~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~----~~~~f 137 (248)
T 3tfw_A 63 QAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHA-QVARENLQLAGVDQRVTLREGPALQSLESLG----ECPAF 137 (248)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHH-HHHHHHHHHTTCTTTEEEEESCHHHHHHTCC----SCCCC
T ss_pred CCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHH-HHHHHHHHHcCCCCcEEEEEcCHHHHHHhcC----CCCCe
Confidence 5789999999999999988765 2 45899999999999 9999999999998889999999988765431 12489
Q ss_pred cEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCC
Q 021116 233 DYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPL 271 (317)
Q Consensus 233 DlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~ 271 (317)
|+|++|.+ ...+...++.+. ++|+|||++++....
T Consensus 138 D~V~~d~~--~~~~~~~l~~~~--~~LkpGG~lv~~~~~ 172 (248)
T 3tfw_A 138 DLIFIDAD--KPNNPHYLRWAL--RYSRPGTLIIGDNVV 172 (248)
T ss_dssp SEEEECSC--GGGHHHHHHHHH--HTCCTTCEEEEECCS
T ss_pred EEEEECCc--hHHHHHHHHHHH--HhcCCCeEEEEeCCC
Confidence 99999985 345667777765 489999999987553
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=6.5e-14 Score=127.87 Aligned_cols=140 Identities=18% Similarity=0.137 Sum_probs=102.0
Q ss_pred CCCCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCc
Q 021116 128 DVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDV 207 (317)
Q Consensus 128 ~~rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~ 207 (317)
.+++++..+.+.+-..+ .++.+|||+|||+|.+++.+++.|+ +|+++|+|+.++ +.+++|++.+++.
T Consensus 102 g~~~tt~~~~~~l~~~~---------~~~~~VLDiGcG~G~l~~~la~~g~-~v~gvDi~~~~v-~~a~~n~~~~~~~-- 168 (254)
T 2nxc_A 102 GHHETTRLALKALARHL---------RPGDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVL-PQAEANAKRNGVR-- 168 (254)
T ss_dssp CCSHHHHHHHHHHHHHC---------CTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCGGGH-HHHHHHHHHTTCC--
T ss_pred CCCHHHHHHHHHHHHhc---------CCCCEEEEecCCCcHHHHHHHHhCC-eEEEEECCHHHH-HHHHHHHHHcCCc--
Confidence 34666665555543321 3578999999999999999888887 899999999999 9999999999885
Q ss_pred eEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCCCCCccc-----cCCCe
Q 021116 208 SSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLD-----TCGCL 282 (317)
Q Consensus 208 v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~~~l~~-----~~~~~ 282 (317)
++++.+|+.+.+. .++||+|++|+++. .+..++..+. ++|+|||++++.........+ ...||
T Consensus 169 v~~~~~d~~~~~~--------~~~fD~Vv~n~~~~--~~~~~l~~~~--~~LkpgG~lils~~~~~~~~~v~~~l~~~Gf 236 (254)
T 2nxc_A 169 PRFLEGSLEAALP--------FGPFDLLVANLYAE--LHAALAPRYR--EALVPGGRALLTGILKDRAPLVREAMAGAGF 236 (254)
T ss_dssp CEEEESCHHHHGG--------GCCEEEEEEECCHH--HHHHHHHHHH--HHEEEEEEEEEEEEEGGGHHHHHHHHHHTTC
T ss_pred EEEEECChhhcCc--------CCCCCEEEECCcHH--HHHHHHHHHH--HHcCCCCEEEEEeeccCCHHHHHHHHHHCCC
Confidence 8899999887431 36899999997542 3445555554 479999999987543333221 13567
Q ss_pred EEEEEeecCc
Q 021116 283 VKIKDRRFGR 292 (317)
Q Consensus 283 ~~~~~r~yG~ 292 (317)
.+.+....++
T Consensus 237 ~~~~~~~~~~ 246 (254)
T 2nxc_A 237 RPLEEAAEGE 246 (254)
T ss_dssp EEEEEEEETT
T ss_pred EEEEEeccCC
Confidence 7765544443
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=1.5e-13 Score=125.14 Aligned_cols=110 Identities=11% Similarity=0.087 Sum_probs=88.2
Q ss_pred CCCeEEEECCCcchHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCc
Q 021116 155 RPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF 232 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~-G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~f 232 (317)
++.+|||+|||+|..++.++.. . ..+|+++|+++.++ +.|++|++.+|+.++++++.+|+.+++..+..-....++|
T Consensus 79 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~-~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f 157 (247)
T 1sui_A 79 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENY-ELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSY 157 (247)
T ss_dssp TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHH-HHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCB
T ss_pred CcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHH-HHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCE
Confidence 5679999999999999987764 2 35899999999999 9999999999998789999999988765431000003689
Q ss_pred cEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 233 DYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 233 DlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
|+||+|.+ ...+...++.+. ++|+|||++++..
T Consensus 158 D~V~~d~~--~~~~~~~l~~~~--~~LkpGG~lv~d~ 190 (247)
T 1sui_A 158 DFIFVDAD--KDNYLNYHKRLI--DLVKVGGVIGYDN 190 (247)
T ss_dssp SEEEECSC--STTHHHHHHHHH--HHBCTTCCEEEEC
T ss_pred EEEEEcCc--hHHHHHHHHHHH--HhCCCCeEEEEec
Confidence 99999975 346777777765 4899999999875
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=1e-13 Score=125.91 Aligned_cols=125 Identities=11% Similarity=0.104 Sum_probs=97.7
Q ss_pred CCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceE
Q 021116 130 RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSS 209 (317)
Q Consensus 130 rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ 209 (317)
.|........++..+.. ..++.+|||+|||+|.+++.++..+..+|+++|+++.++ +.|++|++..|+.++++
T Consensus 27 ~~~~~~~~~~~l~~l~~------~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~-~~a~~~~~~~~~~~~v~ 99 (267)
T 3kkz_A 27 GPGSPEVTLKALSFIDN------LTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFI-DIFNRNARQSGLQNRVT 99 (267)
T ss_dssp SSCCHHHHHHHHTTCCC------CCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHH-HHHHHHHHHTTCTTTEE
T ss_pred CCCCHHHHHHHHHhccc------CCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHH-HHHHHHHHHcCCCcCcE
Confidence 44444444444444431 146789999999999999998888666899999999999 99999999999988899
Q ss_pred EEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 210 IHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 210 ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
++.+|+.++. ...++||+|++..++...+....++.+. ++|+|||++++...
T Consensus 100 ~~~~d~~~~~-------~~~~~fD~i~~~~~~~~~~~~~~l~~~~--~~LkpgG~l~~~~~ 151 (267)
T 3kkz_A 100 GIVGSMDDLP-------FRNEELDLIWSEGAIYNIGFERGLNEWR--KYLKKGGYLAVSEC 151 (267)
T ss_dssp EEECCTTSCC-------CCTTCEEEEEESSCGGGTCHHHHHHHHG--GGEEEEEEEEEEEE
T ss_pred EEEcChhhCC-------CCCCCEEEEEEcCCceecCHHHHHHHHH--HHcCCCCEEEEEEe
Confidence 9999986531 2357899999987754446677777765 58999999998764
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.49 E-value=3.6e-13 Score=124.69 Aligned_cols=127 Identities=14% Similarity=0.117 Sum_probs=90.6
Q ss_pred CCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeC-CHHHHHHHHHHhH-----HHhC
Q 021116 130 RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEM-DPWVVSNVLIPNL-----EWTG 203 (317)
Q Consensus 130 rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDi-n~~al~~~ar~N~-----~~~g 203 (317)
.|.+..+.+.+...... .++.+|||+|||+|.+++.+++.|+.+|+++|+ ++.++ +.|++|+ +.++
T Consensus 61 ~~~~~~l~~~l~~~~~~-------~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~-~~a~~n~~~N~~~~~~ 132 (281)
T 3bzb_A 61 WSGARALADTLCWQPEL-------IAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEIL-NSLESNIREHTANSCS 132 (281)
T ss_dssp -CHHHHHHHHHHHCGGG-------TTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHH-HHHHHHHHTTCC----
T ss_pred ecHHHHHHHHHHhcchh-------cCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHH-HHHHHHHHHhhhhhcc
Confidence 35556566555544322 357899999999999999988888778999999 89999 9999999 5566
Q ss_pred CC----CceEEEEecHHH----HHHHHhhhcCCCCCccEEEE-CCCCCCccHHHHHHHHHHcCCcC---C--CeEEEEEe
Q 021116 204 FL----DVSSIHTVRVET----FLERAEQFVGKDGPFDYMSV-TPPYTAVDYEVLMAQISKSALVG---K--DSFIVVEY 269 (317)
Q Consensus 204 l~----~~v~ii~gD~~~----~l~~~~~~~~~~~~fDlV~~-dPPy~~~~~~~~l~~L~~~~lLk---p--gG~ivv~~ 269 (317)
+. ++++++..|+.+ ..... ..++||+|++ |..|....+..+++.+.. +|+ | ||++++.+
T Consensus 133 ~~~~~~~~v~~~~~~~~~~~~~~~~~~-----~~~~fD~Ii~~dvl~~~~~~~~ll~~l~~--~Lk~~~p~~gG~l~v~~ 205 (281)
T 3bzb_A 133 SETVKRASPKVVPYRWGDSPDSLQRCT-----GLQRFQVVLLADLLSFHQAHDALLRSVKM--LLALPANDPTAVALVTF 205 (281)
T ss_dssp ------CCCEEEECCTTSCTHHHHHHH-----SCSSBSEEEEESCCSCGGGHHHHHHHHHH--HBCCTTTCTTCEEEEEE
T ss_pred cccCCCCCeEEEEecCCCccHHHHhhc-----cCCCCCEEEEeCcccChHHHHHHHHHHHH--HhcccCCCCCCEEEEEE
Confidence 54 468888655432 22111 1368999996 998887778888888763 788 9 99887766
Q ss_pred CC
Q 021116 270 PL 271 (317)
Q Consensus 270 ~~ 271 (317)
..
T Consensus 206 ~~ 207 (281)
T 3bzb_A 206 TH 207 (281)
T ss_dssp CC
T ss_pred Ee
Confidence 54
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.49 E-value=1.9e-13 Score=123.19 Aligned_cols=106 Identities=15% Similarity=0.199 Sum_probs=86.5
Q ss_pred CCCCeEEEECCCcchHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCC
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGP 231 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~-G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~ 231 (317)
.++.+|||+|||+|.+++.++.. + ..+|+++|+++.++ +.|++|++.+|+.++++++.+|+.+.+ ..++
T Consensus 92 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~~~~ 162 (255)
T 3mb5_A 92 SPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFA-KLAWENIKWAGFDDRVTIKLKDIYEGI--------EEEN 162 (255)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHH-HHHHHHHHHHTCTTTEEEECSCGGGCC--------CCCS
T ss_pred CCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHH-HHHHHHHHHcCCCCceEEEECchhhcc--------CCCC
Confidence 46889999999999999998876 4 56899999999999 999999999999888999999988642 2467
Q ss_pred ccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCCCCC
Q 021116 232 FDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTD 274 (317)
Q Consensus 232 fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~~~ 274 (317)
||+|++|+|... ..++.+. +.|+|||++++..+....
T Consensus 163 ~D~v~~~~~~~~----~~l~~~~--~~L~~gG~l~~~~~~~~~ 199 (255)
T 3mb5_A 163 VDHVILDLPQPE----RVVEHAA--KALKPGGFFVAYTPCSNQ 199 (255)
T ss_dssp EEEEEECSSCGG----GGHHHHH--HHEEEEEEEEEEESSHHH
T ss_pred cCEEEECCCCHH----HHHHHHH--HHcCCCCEEEEEECCHHH
Confidence 999999998542 2344443 368999999998765433
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.49 E-value=6.8e-14 Score=127.14 Aligned_cols=111 Identities=14% Similarity=0.092 Sum_probs=89.2
Q ss_pred CCCeEEEECCCcchHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCc
Q 021116 155 RPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF 232 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~-G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~f 232 (317)
++.+|||+|||+|..++.++.. + ..+|++||+++.++ +.|++|++.+|+.++++++.+|+.+.+..+.. .+..++|
T Consensus 60 ~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~-~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~-~~~~~~f 137 (242)
T 3r3h_A 60 RAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWT-KHAHPYWREAKQEHKIKLRLGPALDTLHSLLN-EGGEHQF 137 (242)
T ss_dssp TCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSC-CCSHHHHHHTTCTTTEEEEESCHHHHHHHHHH-HHCSSCE
T ss_pred CcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHH-HHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhh-ccCCCCE
Confidence 4679999999999999988763 2 35899999999999 99999999999988899999999887755310 0013689
Q ss_pred cEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCC
Q 021116 233 DYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPL 271 (317)
Q Consensus 233 DlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~ 271 (317)
|+||+|.+ ...+...++.+. ++|+|||++++....
T Consensus 138 D~V~~d~~--~~~~~~~l~~~~--~~LkpGG~lv~d~~~ 172 (242)
T 3r3h_A 138 DFIFIDAD--KTNYLNYYELAL--KLVTPKGLIAIDNIF 172 (242)
T ss_dssp EEEEEESC--GGGHHHHHHHHH--HHEEEEEEEEEECSS
T ss_pred eEEEEcCC--hHHhHHHHHHHH--HhcCCCeEEEEECCc
Confidence 99999986 345667777665 489999999996543
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=99.49 E-value=4.9e-13 Score=118.35 Aligned_cols=110 Identities=15% Similarity=0.073 Sum_probs=88.4
Q ss_pred CCCeEEEECCCcchHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCc
Q 021116 155 RPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF 232 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~-G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~f 232 (317)
++.+|||+|||+|..++.+++. + ..+|+++|+++.++ +.|++|++.+|+.++++++.+|+.+.+..+.. ....++|
T Consensus 69 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~-~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~-~~~~~~~ 146 (229)
T 2avd_A 69 QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPP-ELGRPLWRQAEAEHKIDLRLKPALETLDELLA-AGEAGTF 146 (229)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHH-HHHHHHHHHTTCTTTEEEEESCHHHHHHHHHH-TTCTTCE
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHH-HHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHh-cCCCCCc
Confidence 5789999999999999988764 2 45899999999999 99999999999987899999999887654320 0001579
Q ss_pred cEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 233 DYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 233 DlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
|+|++|++. ..+...++.+. ++|+|||++++...
T Consensus 147 D~v~~d~~~--~~~~~~l~~~~--~~L~pgG~lv~~~~ 180 (229)
T 2avd_A 147 DVAVVDADK--ENCSAYYERCL--QLLRPGGILAVLRV 180 (229)
T ss_dssp EEEEECSCS--TTHHHHHHHHH--HHEEEEEEEEEECC
T ss_pred cEEEECCCH--HHHHHHHHHHH--HHcCCCeEEEEECC
Confidence 999999873 35677777765 48999999998653
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.49 E-value=1.7e-13 Score=122.91 Aligned_cols=125 Identities=13% Similarity=0.076 Sum_probs=97.6
Q ss_pred CCCCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCc
Q 021116 128 DVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDV 207 (317)
Q Consensus 128 ~~rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~ 207 (317)
..+|......+.+.+.+.. .++.+|||+|||+|.+++.++.....+|+++|+++.++ +.|++|++..|+.++
T Consensus 16 ~~~~~~~~~~~~l~~~~~~-------~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l-~~a~~~~~~~~~~~~ 87 (256)
T 1nkv_A 16 IHNPFTEEKYATLGRVLRM-------KPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFT-AQAKRRAEELGVSER 87 (256)
T ss_dssp SSSSCCHHHHHHHHHHTCC-------CTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHH-HHHHHHHHHTTCTTT
T ss_pred ccCCCCHHHHHHHHHhcCC-------CCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHH-HHHHHHHHhcCCCcc
Confidence 3467777777777666643 46789999999999999988775334799999999999 999999999998778
Q ss_pred eEEEEecHHHHHHHHhhhcCCCCCccEEEECCC-CCCccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 208 SSIHTVRVETFLERAEQFVGKDGPFDYMSVTPP-YTAVDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 208 v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPP-y~~~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
++++++|+.+.. . +++||+|++... +...+....++.+. ++|+|||++++..+
T Consensus 88 v~~~~~d~~~~~-------~-~~~fD~V~~~~~~~~~~~~~~~l~~~~--r~LkpgG~l~~~~~ 141 (256)
T 1nkv_A 88 VHFIHNDAAGYV-------A-NEKCDVAACVGATWIAGGFAGAEELLA--QSLKPGGIMLIGEP 141 (256)
T ss_dssp EEEEESCCTTCC-------C-SSCEEEEEEESCGGGTSSSHHHHHHHT--TSEEEEEEEEEEEE
T ss_pred eEEEECChHhCC-------c-CCCCCEEEECCChHhcCCHHHHHHHHH--HHcCCCeEEEEecC
Confidence 999999987642 1 478999998433 23335566677664 69999999998754
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=99.48 E-value=4.1e-13 Score=121.22 Aligned_cols=111 Identities=12% Similarity=0.101 Sum_probs=88.9
Q ss_pred CCCeEEEECCCcchHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCc
Q 021116 155 RPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF 232 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~-G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~f 232 (317)
+..+|||+|||+|..++.+++. + ..+|+++|+++.++ +.|++|++..|+.++++++.+|+.+++..+..-....++|
T Consensus 70 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~-~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f 148 (237)
T 3c3y_A 70 NAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAY-EIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSY 148 (237)
T ss_dssp TCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHH-HHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCE
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHH-HHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCc
Confidence 5679999999999999987764 2 45899999999999 9999999999998789999999998765441000013689
Q ss_pred cEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 233 DYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 233 DlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
|+||+|.+ ...+...++.+. ++|+|||++++...
T Consensus 149 D~I~~d~~--~~~~~~~l~~~~--~~L~pGG~lv~d~~ 182 (237)
T 3c3y_A 149 DFGFVDAD--KPNYIKYHERLM--KLVKVGGIVAYDNT 182 (237)
T ss_dssp EEEEECSC--GGGHHHHHHHHH--HHEEEEEEEEEECT
T ss_pred CEEEECCc--hHHHHHHHHHHH--HhcCCCeEEEEecC
Confidence 99999974 346777777765 48999999998753
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.8e-13 Score=120.13 Aligned_cols=103 Identities=12% Similarity=0.085 Sum_probs=85.6
Q ss_pred CCCeEEEECCCcchHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCc
Q 021116 155 RPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF 232 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~-G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~f 232 (317)
++.+|||+|||+|..++.+++. + ..+|+++|+++.++ +.|++|++.+++.++++++.+|+.+.+... .+ |
T Consensus 56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~------~~-f 127 (210)
T 3c3p_A 56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNV-EHARRMLHDNGLIDRVELQVGDPLGIAAGQ------RD-I 127 (210)
T ss_dssp CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHH-HHHHHHHHHHSGGGGEEEEESCHHHHHTTC------CS-E
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHH-HHHHHHHHHCCCCceEEEEEecHHHHhccC------CC-C
Confidence 4679999999999999988765 2 35899999999999 999999999998878999999998765322 35 9
Q ss_pred cEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 233 DYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 233 DlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
|+|++|.+ ...+...++.+. ++|+|||++++..
T Consensus 128 D~v~~~~~--~~~~~~~l~~~~--~~LkpgG~lv~~~ 160 (210)
T 3c3p_A 128 DILFMDCD--VFNGADVLERMN--RCLAKNALLIAVN 160 (210)
T ss_dssp EEEEEETT--TSCHHHHHHHHG--GGEEEEEEEEEES
T ss_pred CEEEEcCC--hhhhHHHHHHHH--HhcCCCeEEEEEC
Confidence 99999964 346777777775 5899999999864
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=3.8e-13 Score=124.86 Aligned_cols=148 Identities=15% Similarity=0.107 Sum_probs=101.0
Q ss_pred cceEEEEeeeecceEEecCCCC-CCCCChHHHHHHHHHH-HhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEE
Q 021116 106 HRLLQVLGGKARRKKLLSPKGM-DVRPMMEVVKGAAFDI-LQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHF 183 (317)
Q Consensus 106 ~~il~ii~G~~~G~~l~~p~~~-~~rpt~~~v~~alf~~-L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~a 183 (317)
.+-++++.+...|+.+...... ..........+.+... +... ..+.+|||+|||+|.++.++++.+..+|++
T Consensus 30 ~~~i~v~~~~~~g~~L~ldg~~q~~~~d~~~y~e~l~~~~l~~~------~~~~~VLdiG~G~G~~~~~l~~~~~~~v~~ 103 (281)
T 1mjf_A 30 YQKIEVYETEGFGRLLALDGTVQLVTLGERSYHEPLVHPAMLAH------PKPKRVLVIGGGDGGTVREVLQHDVDEVIM 103 (281)
T ss_dssp SCEEEEEEESSSCEEEEETTEEEEETTTTHHHHHHHHHHHHHHS------SCCCEEEEEECTTSHHHHHHTTSCCSEEEE
T ss_pred CccEEEEECCCccEEEEECCEeeeccccchHHHHHHHHHHHhhC------CCCCeEEEEcCCcCHHHHHHHhCCCCEEEE
Confidence 3445666666566666554211 1111111233444432 1111 356899999999999999988877679999
Q ss_pred EeCCHHHHHHHHHHhHHHh--CC--------CCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCcc-----HHH
Q 021116 184 VEMDPWVVSNVLIPNLEWT--GF--------LDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVD-----YEV 248 (317)
Q Consensus 184 VDin~~al~~~ar~N~~~~--gl--------~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~-----~~~ 248 (317)
||+|+.++ +.|++|+ .. ++ .++++++.+|+.+++.. .++||+|++|+|...+. ..+
T Consensus 104 vDid~~~i-~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-------~~~fD~Ii~d~~~~~~~~~~l~~~~ 174 (281)
T 1mjf_A 104 VEIDEDVI-MVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-------NRGFDVIIADSTDPVGPAKVLFSEE 174 (281)
T ss_dssp EESCHHHH-HHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-------CCCEEEEEEECCCCC-----TTSHH
T ss_pred EECCHHHH-HHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcc-------cCCeeEEEECCCCCCCcchhhhHHH
Confidence 99999999 9999998 43 33 35799999999887653 26899999999864221 245
Q ss_pred HHHHHHHcCCcCCCeEEEEEeC
Q 021116 249 LMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 249 ~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
.++.+. ++|+|||++++...
T Consensus 175 ~l~~~~--~~L~pgG~lv~~~~ 194 (281)
T 1mjf_A 175 FYRYVY--DALNNPGIYVTQAG 194 (281)
T ss_dssp HHHHHH--HHEEEEEEEEEEEE
T ss_pred HHHHHH--HhcCCCcEEEEEcC
Confidence 566654 48999999999754
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=3.3e-13 Score=132.53 Aligned_cols=125 Identities=14% Similarity=0.045 Sum_probs=93.9
Q ss_pred CChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHhHH-------Hh
Q 021116 131 PMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLE-------WT 202 (317)
Q Consensus 131 pt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas-~Ga~~V~aVDin~~al~~~ar~N~~-------~~ 202 (317)
++...+...+++.+.. .++.+|||||||+|.+++.++. .|+.+|+|||+++.++ ++|++|++ .+
T Consensus 156 Et~~~~i~~il~~l~l-------~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~l-elAr~n~e~frkr~~~~ 227 (438)
T 3uwp_A 156 ETSFDLVAQMIDEIKM-------TDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPA-KYAETMDREFRKWMKWY 227 (438)
T ss_dssp GTHHHHHHHHHHHHCC-------CTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHH-HHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhcCC-------CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHH-HHHHHHHHHHHHHHHHh
Confidence 4555666667666643 4688999999999999998775 5776799999999998 99998763 45
Q ss_pred CCC-CceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 203 GFL-DVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 203 gl~-~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
|+. ++++++++|+.+...... -..||+||++++|...+....+..+. +.|+|||+|++...
T Consensus 228 Gl~~~rVefi~GD~~~lp~~d~-----~~~aDVVf~Nn~~F~pdl~~aL~Ei~--RvLKPGGrIVssE~ 289 (438)
T 3uwp_A 228 GKKHAEYTLERGDFLSEEWRER-----IANTSVIFVNNFAFGPEVDHQLKERF--ANMKEGGRIVSSKP 289 (438)
T ss_dssp TBCCCEEEEEECCTTSHHHHHH-----HHTCSEEEECCTTCCHHHHHHHHHHH--TTSCTTCEEEESSC
T ss_pred CCCCCCeEEEECcccCCccccc-----cCCccEEEEcccccCchHHHHHHHHH--HcCCCCcEEEEeec
Confidence 763 679999999876532110 04699999999876555555555543 69999999998643
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=2.9e-13 Score=121.23 Aligned_cols=110 Identities=8% Similarity=0.052 Sum_probs=88.0
Q ss_pred CCCeEEEECCCcchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
.+.+|||+|||+|.+++.++... ...|++||+++.++ +.|++|++.+++.+ ++++++|+.+++... ..+++||
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l-~~a~~~~~~~~l~n-v~~~~~Da~~~l~~~----~~~~~~d 107 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGV-GACLASAHEEGLSN-LRVMCHDAVEVLHKM----IPDNSLR 107 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHH-HHHHHHHHHTTCSS-EEEECSCHHHHHHHH----SCTTCEE
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHH-HHHHHHHHHhCCCc-EEEEECCHHHHHHHH----cCCCChh
Confidence 46799999999999999887764 35799999999999 99999999999865 999999999876532 1357899
Q ss_pred EEEEC--CCCCCccH-------HHHHHHHHHcCCcCCCeEEEEEeCCC
Q 021116 234 YMSVT--PPYTAVDY-------EVLMAQISKSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 234 lV~~d--PPy~~~~~-------~~~l~~L~~~~lLkpgG~ivv~~~~~ 272 (317)
.|+++ +||..... ...++.+. ++|+|||++++.++..
T Consensus 108 ~v~~~~~~p~~~~~~~~rr~~~~~~l~~~~--r~LkpGG~l~i~td~~ 153 (218)
T 3dxy_A 108 MVQLFFPDPWHKARHNKRRIVQVPFAELVK--SKLQLGGVFHMATDWE 153 (218)
T ss_dssp EEEEESCCCCCSGGGGGGSSCSHHHHHHHH--HHEEEEEEEEEEESCH
T ss_pred eEEEeCCCCccchhhhhhhhhhHHHHHHHH--HHcCCCcEEEEEeCCH
Confidence 99987 56544321 24666665 4899999999998754
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.1e-13 Score=125.62 Aligned_cols=124 Identities=11% Similarity=0.053 Sum_probs=92.1
Q ss_pred CCCCeEEEECCCcchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF 232 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~f 232 (317)
.++.+|||+|||+|.+++.++..| +.+|+++|+|+.++ +.|++|++.+|+.++++++.+|+.+.+.. .+.|
T Consensus 14 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al-~~A~~N~~~~gl~~~i~~~~~d~l~~l~~-------~~~~ 85 (225)
T 3kr9_A 14 SQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPY-QSAVKNVEAHGLKEKIQVRLANGLAAFEE-------TDQV 85 (225)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHH-HHHHHHHHHTTCTTTEEEEECSGGGGCCG-------GGCC
T ss_pred CCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHHHHcCCCceEEEEECchhhhccc-------CcCC
Confidence 357899999999999999999887 56899999999999 99999999999998999999998764311 1269
Q ss_pred cEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCCCCC-ccc--cCCCeEEEEEe
Q 021116 233 DYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTD-MLD--TCGCLVKIKDR 288 (317)
Q Consensus 233 DlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~~~-l~~--~~~~~~~~~~r 288 (317)
|+|++... +...+.++++... ..|+++|+++++...... +.. ...||.+.++.
T Consensus 86 D~IviaG~-Gg~~i~~Il~~~~--~~L~~~~~lVlq~~~~~~~vr~~L~~~Gf~i~~e~ 141 (225)
T 3kr9_A 86 SVITIAGM-GGRLIARILEEGL--GKLANVERLILQPNNREDDLRIWLQDHGFQIVAES 141 (225)
T ss_dssp CEEEEEEE-CHHHHHHHHHHTG--GGCTTCCEEEEEESSCHHHHHHHHHHTTEEEEEEE
T ss_pred CEEEEcCC-ChHHHHHHHHHHH--HHhCCCCEEEEECCCCHHHHHHHHHHCCCEEEEEE
Confidence 98887421 1112344444433 578999999998764322 111 24678887764
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=3.1e-13 Score=126.51 Aligned_cols=153 Identities=12% Similarity=0.061 Sum_probs=101.9
Q ss_pred cccceEEEEeeeecceEEecCCCC-CCCCChHHHHHHHHHHH-hhcCCCCCCCCCCeEEEECCCcchHHHHHHHc-CCCE
Q 021116 104 TTHRLLQVLGGKARRKKLLSPKGM-DVRPMMEVVKGAAFDIL-QSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-GCSE 180 (317)
Q Consensus 104 ~~~~il~ii~G~~~G~~l~~p~~~-~~rpt~~~v~~alf~~L-~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~-Ga~~ 180 (317)
+..+-++++.+...|+.+...... +.++......+.+.... ... ..+.+|||+|||+|.++.++++. +..+
T Consensus 43 s~~q~i~v~~~~~~g~~l~ldg~~~~~~~de~~y~e~l~~~~l~~~------~~~~~VLdiG~G~G~~~~~l~~~~~~~~ 116 (296)
T 1inl_A 43 SDIQRIDIFENPDLGVVFALDGITMTTEKDEFMYHEMLAHVPMFLH------PNPKKVLIIGGGDGGTLREVLKHDSVEK 116 (296)
T ss_dssp CSSCEEEEEEETTTEEEEEETTEEEEETTTHHHHHHHHHHHHHHHS------SSCCEEEEEECTTCHHHHHHTTSTTCSE
T ss_pred CCCccEEEEEcCCCcEEEEECCEEeecccchhHHHHHHhHHHHhcC------CCCCEEEEEcCCcCHHHHHHHhcCCCCE
Confidence 334455666666667766665322 12222222334443321 111 34689999999999999999886 5678
Q ss_pred EEEEeCCHHHHHHHHHHhHHH--hCC-CCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCC-Cc-----cHHHHHH
Q 021116 181 VHFVEMDPWVVSNVLIPNLEW--TGF-LDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYT-AV-----DYEVLMA 251 (317)
Q Consensus 181 V~aVDin~~al~~~ar~N~~~--~gl-~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~-~~-----~~~~~l~ 251 (317)
|++||+|+.++ +.|++|+.. .++ .++++++.+|+.+++.. ..++||+|++|+|.. .+ ...+.++
T Consensus 117 v~~vDid~~~~-~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~------~~~~fD~Ii~d~~~~~~~~~~~l~~~~~l~ 189 (296)
T 1inl_A 117 AILCEVDGLVI-EAARKYLKQTSCGFDDPRAEIVIANGAEYVRK------FKNEFDVIIIDSTDPTAGQGGHLFTEEFYQ 189 (296)
T ss_dssp EEEEESCHHHH-HHHHHHCHHHHGGGGCTTEEEEESCHHHHGGG------CSSCEEEEEEEC----------CCSHHHHH
T ss_pred EEEEECCHHHH-HHHHHHhHhhccccCCCceEEEECcHHHHHhh------CCCCceEEEEcCCCcccCchhhhhHHHHHH
Confidence 99999999999 999999865 233 35799999999887532 246799999998753 21 1245566
Q ss_pred HHHHcCCcCCCeEEEEEeCC
Q 021116 252 QISKSALVGKDSFIVVEYPL 271 (317)
Q Consensus 252 ~L~~~~lLkpgG~ivv~~~~ 271 (317)
.+. ++|+|||++++....
T Consensus 190 ~~~--~~LkpgG~lv~~~~~ 207 (296)
T 1inl_A 190 ACY--DALKEDGVFSAETED 207 (296)
T ss_dssp HHH--HHEEEEEEEEEECCC
T ss_pred HHH--HhcCCCcEEEEEccC
Confidence 654 489999999998543
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.4e-13 Score=132.93 Aligned_cols=105 Identities=12% Similarity=0.093 Sum_probs=86.8
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
.++.+|||+|||+|.+++.++++|+.+|++||++ .++ +.|++|++.+++.++++++++|+.++. ..++||
T Consensus 62 ~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~-~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~~~~~D 131 (376)
T 3r0q_C 62 FEGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMA-DHARALVKANNLDHIVEVIEGSVEDIS--------LPEKVD 131 (376)
T ss_dssp TTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTH-HHHHHHHHHTTCTTTEEEEESCGGGCC--------CSSCEE
T ss_pred CCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHH-HHHHHHHHHcCCCCeEEEEECchhhcC--------cCCcce
Confidence 4689999999999999999999988899999999 898 999999999999988999999998752 126899
Q ss_pred EEEECCC-CCC---ccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 234 YMSVTPP-YTA---VDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 234 lV~~dPP-y~~---~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
+|++++. |.. ...+.++..+. ++|+|||++++...
T Consensus 132 ~Iv~~~~~~~l~~e~~~~~~l~~~~--~~LkpgG~li~~~~ 170 (376)
T 3r0q_C 132 VIISEWMGYFLLRESMFDSVISARD--RWLKPTGVMYPSHA 170 (376)
T ss_dssp EEEECCCBTTBTTTCTHHHHHHHHH--HHEEEEEEEESSEE
T ss_pred EEEEcChhhcccchHHHHHHHHHHH--hhCCCCeEEEEecC
Confidence 9999883 432 23555666554 48999999986543
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.46 E-value=4.5e-13 Score=119.48 Aligned_cols=106 Identities=15% Similarity=0.137 Sum_probs=87.5
Q ss_pred CCCeEEEECCCcchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
++.+|||+|||+|.+++.++... ..+|+++|+++.++ +.|++|++.+|+.++++++.+|+.+.+.... ..++||
T Consensus 54 ~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~----~~~~fD 128 (233)
T 2gpy_A 54 APARILEIGTAIGYSAIRMAQALPEATIVSIERDERRY-EEAHKHVKALGLESRIELLFGDALQLGEKLE----LYPLFD 128 (233)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHH-HHHHHHHHHTTCTTTEEEECSCGGGSHHHHT----TSCCEE
T ss_pred CCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHH-HHHHHHHHHcCCCCcEEEEECCHHHHHHhcc----cCCCcc
Confidence 57799999999999999887753 45899999999999 9999999999987789999999988654431 136899
Q ss_pred EEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 234 YMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 234 lV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
+|++|++.. .+...++.+. ++|+|||++++..
T Consensus 129 ~I~~~~~~~--~~~~~l~~~~--~~L~pgG~lv~~~ 160 (233)
T 2gpy_A 129 VLFIDAAKG--QYRRFFDMYS--PMVRPGGLILSDN 160 (233)
T ss_dssp EEEEEGGGS--CHHHHHHHHG--GGEEEEEEEEEET
T ss_pred EEEECCCHH--HHHHHHHHHH--HHcCCCeEEEEEc
Confidence 999998753 5677777765 5899999999974
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=4.7e-13 Score=126.00 Aligned_cols=154 Identities=16% Similarity=0.130 Sum_probs=101.9
Q ss_pred ccccceEEEEeeeecceEEecCCCCC-CCCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcC-CCE
Q 021116 103 RTTHRLLQVLGGKARRKKLLSPKGMD-VRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRG-CSE 180 (317)
Q Consensus 103 ~~~~~il~ii~G~~~G~~l~~p~~~~-~rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~G-a~~ 180 (317)
....+-++|+.+.+.|+.+....... .... +.....++..+.... ...+.+|||+|||+|.++.++++.+ ..+
T Consensus 47 ~s~~q~i~v~~~~~~g~~L~ldg~~~~~~~d-e~~y~e~l~~~~l~~----~~~~~~VLdiG~G~G~~~~~l~~~~~~~~ 121 (304)
T 2o07_A 47 RSRYQDILVFRSKTYGNVLVLDGVIQCTERD-EFSYQEMIANLPLCS----HPNPRKVLIIGGGDGGVLREVVKHPSVES 121 (304)
T ss_dssp ECSSSEEEEEEESSSCEEEEETTEEEEETTT-HHHHHHHHHHHHHTT----SSSCCEEEEEECTTSHHHHHHTTCTTCCE
T ss_pred ECCCcEEEEEEcCCCceEEEECCEEEeeccc-chHHHHHHHHHHHhh----CCCCCEEEEECCCchHHHHHHHHcCCCCE
Confidence 34445566777777787776652111 0111 222212222221110 1356899999999999999998764 568
Q ss_pred EEEEeCCHHHHHHHHHHhHHH--hCC-CCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCc-----cHHHHHHH
Q 021116 181 VHFVEMDPWVVSNVLIPNLEW--TGF-LDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAV-----DYEVLMAQ 252 (317)
Q Consensus 181 V~aVDin~~al~~~ar~N~~~--~gl-~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~-----~~~~~l~~ 252 (317)
|++||+|+.++ +.|++|+.. .++ .++++++.+|+.+++... .++||+||+|+|.... ...+.++.
T Consensus 122 v~~vDid~~~i-~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~------~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~ 194 (304)
T 2o07_A 122 VVQCEIDEDVI-QVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQN------QDAFDVIITDSSDPMGPAESLFKESYYQL 194 (304)
T ss_dssp EEEEESCHHHH-HHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTC------SSCEEEEEEECC-----------CHHHHH
T ss_pred EEEEECCHHHH-HHHHHHhHHhhcccCCCcEEEEECcHHHHHhhC------CCCceEEEECCCCCCCcchhhhHHHHHHH
Confidence 99999999999 999999876 344 467999999999876532 4689999999876422 12345555
Q ss_pred HHHcCCcCCCeEEEEEeC
Q 021116 253 ISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 253 L~~~~lLkpgG~ivv~~~ 270 (317)
+. ++|+|||++++...
T Consensus 195 ~~--~~LkpgG~lv~~~~ 210 (304)
T 2o07_A 195 MK--TALKEDGVLCCQGE 210 (304)
T ss_dssp HH--HHEEEEEEEEEEEE
T ss_pred HH--hccCCCeEEEEecC
Confidence 54 48999999999863
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.46 E-value=3.5e-13 Score=129.77 Aligned_cols=108 Identities=14% Similarity=0.082 Sum_probs=84.8
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGC-SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF 232 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga-~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~f 232 (317)
.++.+|||+| |+|.++++++..+. .+|+++|+++.++ +.|++|++.+|+. +++++++|+.+.+.. ...++|
T Consensus 171 ~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l-~~a~~~~~~~g~~-~v~~~~~D~~~~l~~-----~~~~~f 242 (373)
T 2qm3_A 171 LENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLT-KFIEKAANEIGYE-DIEIFTFDLRKPLPD-----YALHKF 242 (373)
T ss_dssp STTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHH-HHHHHHHHHHTCC-CEEEECCCTTSCCCT-----TTSSCB
T ss_pred CCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHHHHcCCC-CEEEEEChhhhhchh-----hccCCc
Confidence 3578999999 99999999888775 6899999999999 9999999999986 699999998773211 013579
Q ss_pred cEEEECCCCCCccHHHHHHHHHHcCCcCCCe-EEEEEeCC
Q 021116 233 DYMSVTPPYTAVDYEVLMAQISKSALVGKDS-FIVVEYPL 271 (317)
Q Consensus 233 DlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG-~ivv~~~~ 271 (317)
|+|++||||........++.+. +.|+||| ++++++..
T Consensus 243 D~Vi~~~p~~~~~~~~~l~~~~--~~LkpgG~~~~~~~~~ 280 (373)
T 2qm3_A 243 DTFITDPPETLEAIRAFVGRGI--ATLKGPRCAGYFGITR 280 (373)
T ss_dssp SEEEECCCSSHHHHHHHHHHHH--HTBCSTTCEEEEEECT
T ss_pred cEEEECCCCchHHHHHHHHHHH--HHcccCCeEEEEEEec
Confidence 9999999997433344444443 5899999 54666554
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.46 E-value=3.3e-13 Score=118.95 Aligned_cols=108 Identities=10% Similarity=0.072 Sum_probs=85.6
Q ss_pred CCCeEEEECCCcchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
.+.+|||+|||+|.+++.++... ..+|++||+++.++ +.|++|++.+++ ++++++++|+.++...+ ..++||
T Consensus 41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l-~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~-----~~~~~D 113 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVL-SYALDKVLEVGV-PNIKLLWVDGSDLTDYF-----EDGEID 113 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHH-HHHHHHHHHHCC-SSEEEEECCSSCGGGTS-----CTTCCS
T ss_pred CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHH-HHHHHHHHHcCC-CCEEEEeCCHHHHHhhc-----CCCCCC
Confidence 47899999999999999888764 35899999999999 999999999998 46999999987642111 246799
Q ss_pred EEEECCCCCCc---------cHHHHHHHHHHcCCcCCCeEEEEEeCC
Q 021116 234 YMSVTPPYTAV---------DYEVLMAQISKSALVGKDSFIVVEYPL 271 (317)
Q Consensus 234 lV~~dPPy~~~---------~~~~~l~~L~~~~lLkpgG~ivv~~~~ 271 (317)
+|++++|-... .+...++.+. ++|+|||++++++..
T Consensus 114 ~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~LkpgG~l~~~~~~ 158 (214)
T 1yzh_A 114 RLYLNFSDPWPKKRHEKRRLTYKTFLDTFK--RILPENGEIHFKTDN 158 (214)
T ss_dssp EEEEESCCCCCSGGGGGGSTTSHHHHHHHH--HHSCTTCEEEEEESC
T ss_pred EEEEECCCCccccchhhhccCCHHHHHHHH--HHcCCCcEEEEEeCC
Confidence 99999874321 2356677665 479999999998864
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=4.6e-13 Score=133.28 Aligned_cols=105 Identities=23% Similarity=0.203 Sum_probs=83.1
Q ss_pred CCCCeEEEECCCcchHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCC
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGP 231 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~--Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~ 231 (317)
.++.+|||+|||+|..++.++++ +..+|+++|+++.++ +.+++|++.+|+. ++++++|+.++.... .+.
T Consensus 100 ~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l-~~a~~n~~r~G~~--v~~~~~Da~~l~~~~------~~~ 170 (464)
T 3m6w_A 100 KPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRV-RGLLENVERWGAP--LAVTQAPPRALAEAF------GTY 170 (464)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHH-HHHHHHHHHHCCC--CEEECSCHHHHHHHH------CSC
T ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHH-HHHHHHHHHcCCe--EEEEECCHHHhhhhc------ccc
Confidence 46889999999999999988764 335899999999999 9999999999985 899999998875433 368
Q ss_pred ccEEEECCCCCC-cc---------------H-------HHHHHHHHHcCCcCCCeEEEEEe
Q 021116 232 FDYMSVTPPYTA-VD---------------Y-------EVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 232 fDlV~~dPPy~~-~~---------------~-------~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
||+|++||||.. +. . .++++.+ .++|+|||+++.++
T Consensus 171 FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a--~~~LkpGG~LvysT 229 (464)
T 3m6w_A 171 FHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQA--SRLLGPGGVLVYST 229 (464)
T ss_dssp EEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHH--HTTEEEEEEEEEEE
T ss_pred CCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHH--HHhcCCCcEEEEEe
Confidence 999999999842 10 0 2233333 47999999987653
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=1.2e-12 Score=124.23 Aligned_cols=150 Identities=13% Similarity=0.137 Sum_probs=102.2
Q ss_pred ceEEEEeeeecceEEecCCCC-CCCCChHHHHHHHHHH-HhhcCCCCCCCCCCeEEEECCCcchHHHHHHHc-CCCEEEE
Q 021116 107 RLLQVLGGKARRKKLLSPKGM-DVRPMMEVVKGAAFDI-LQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-GCSEVHF 183 (317)
Q Consensus 107 ~il~ii~G~~~G~~l~~p~~~-~~rpt~~~v~~alf~~-L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~-Ga~~V~a 183 (317)
+-+.+....+.|+.+...... ..++......+.+... +... ..+.+|||+|||+|.+++++++. +..+|++
T Consensus 72 q~i~v~~~~~~g~~l~ldg~~~~~~~de~~y~e~l~~~~l~~~------~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~ 145 (321)
T 2pt6_A 72 QNVLVFESTTYGKVLVLDGVIQLTEKDEFAYHEMMTHVPMTVS------KEPKNVLVVGGGDGGIIRELCKYKSVENIDI 145 (321)
T ss_dssp CEEEEEEESSSCEEEEETTEEEEETTTHHHHHHHHHHHHHHHS------SSCCEEEEEECTTCHHHHHHTTCTTCCEEEE
T ss_pred ceEEEEEcCCCcEEEEECCEeeeCcccchHHHHHHHHHHHhcC------CCCCEEEEEcCCccHHHHHHHHcCCCCEEEE
Confidence 334455555667777654322 2333322223333332 1111 34689999999999999998876 4578999
Q ss_pred EeCCHHHHHHHHHHhHHH--hCC-CCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCc----cH-HHHHHHHHH
Q 021116 184 VEMDPWVVSNVLIPNLEW--TGF-LDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAV----DY-EVLMAQISK 255 (317)
Q Consensus 184 VDin~~al~~~ar~N~~~--~gl-~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~----~~-~~~l~~L~~ 255 (317)
||+|+.++ +.|++|+.. +++ .++++++.+|+.+++... .++||+|++|++-..+ .+ .+.++.+.
T Consensus 146 vDis~~~l-~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~------~~~fDvIi~d~~~p~~~~~~l~~~~~l~~~~- 217 (321)
T 2pt6_A 146 CEIDETVI-EVSKIYFKNISCGYEDKRVNVFIEDASKFLENV------TNTYDVIIVDSSDPIGPAETLFNQNFYEKIY- 217 (321)
T ss_dssp EESCHHHH-HHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHC------CSCEEEEEEECCCSSSGGGGGSSHHHHHHHH-
T ss_pred EECCHHHH-HHHHHHHHhhccccCCCcEEEEEccHHHHHhhc------CCCceEEEECCcCCCCcchhhhHHHHHHHHH-
Confidence 99999999 999999876 334 357999999999876542 4689999999842211 12 56666665
Q ss_pred cCCcCCCeEEEEEeCC
Q 021116 256 SALVGKDSFIVVEYPL 271 (317)
Q Consensus 256 ~~lLkpgG~ivv~~~~ 271 (317)
+.|+|||+++++...
T Consensus 218 -~~LkpgG~lv~~~~~ 232 (321)
T 2pt6_A 218 -NALKPNGYCVAQCES 232 (321)
T ss_dssp -HHEEEEEEEEEEECC
T ss_pred -HhcCCCcEEEEEcCC
Confidence 489999999998653
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.8e-12 Score=116.43 Aligned_cols=108 Identities=12% Similarity=0.115 Sum_probs=88.7
Q ss_pred CCCeEEEECCCcchHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCC--C
Q 021116 155 RPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKD--G 230 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~-G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~--~ 230 (317)
++.+|||+|||+|..++.+++. + ..+|+++|+++.++ +.|++|++.+|+.++++++.+|+.+.+..+. ..+ +
T Consensus 72 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~-~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~---~~~~~~ 147 (232)
T 3cbg_A 72 GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNAT-AIAKKYWQKAGVAEKISLRLGPALATLEQLT---QGKPLP 147 (232)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHH-HHHHHHHHHHTCGGGEEEEESCHHHHHHHHH---TSSSCC
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHH-HHHHHHHHHcCCCCcEEEEEcCHHHHHHHHH---hcCCCC
Confidence 4679999999999999988764 2 34899999999999 9999999999998789999999988765442 122 6
Q ss_pred CccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 231 PFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 231 ~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
+||+||+|.+ ...+...++.+. ++|+|||++++...
T Consensus 148 ~fD~V~~d~~--~~~~~~~l~~~~--~~LkpgG~lv~~~~ 183 (232)
T 3cbg_A 148 EFDLIFIDAD--KRNYPRYYEIGL--NLLRRGGLMVIDNV 183 (232)
T ss_dssp CEEEEEECSC--GGGHHHHHHHHH--HTEEEEEEEEEECT
T ss_pred CcCEEEECCC--HHHHHHHHHHHH--HHcCCCeEEEEeCC
Confidence 7999999975 346777777775 48999999999754
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.44 E-value=5.5e-13 Score=115.82 Aligned_cols=124 Identities=12% Similarity=0.137 Sum_probs=95.7
Q ss_pred CCCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCce
Q 021116 129 VRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVS 208 (317)
Q Consensus 129 ~rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v 208 (317)
.+|....+.+.+.+.+.. .+.+|||+|||+|.++..++.....+|+++|+++.++ +.|++|++..++.+++
T Consensus 25 ~~~~~~~~~~~~~~~~~~--------~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~-~~a~~~~~~~~~~~~~ 95 (219)
T 3dlc_A 25 FAPIYPIIAENIINRFGI--------TAGTCIDIGSGPGALSIALAKQSDFSIRALDFSKHMN-EIALKNIADANLNDRI 95 (219)
T ss_dssp TTTHHHHHHHHHHHHHCC--------CEEEEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHH-HHHHHHHHHTTCTTTE
T ss_pred hccccHHHHHHHHHhcCC--------CCCEEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHH-HHHHHHHHhccccCce
Confidence 355555566666665542 3349999999999999988876444799999999999 9999999999988789
Q ss_pred EEEEecHHHHHHHHhhhcCCCCCccEEEECCCCC-CccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 209 SIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYT-AVDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 209 ~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~-~~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
+++++|+.+.. ...++||+|+++..+. ..+....++.+. ++|+|||++++...
T Consensus 96 ~~~~~d~~~~~-------~~~~~~D~v~~~~~l~~~~~~~~~l~~~~--~~L~pgG~l~~~~~ 149 (219)
T 3dlc_A 96 QIVQGDVHNIP-------IEDNYADLIVSRGSVFFWEDVATAFREIY--RILKSGGKTYIGGG 149 (219)
T ss_dssp EEEECBTTBCS-------SCTTCEEEEEEESCGGGCSCHHHHHHHHH--HHEEEEEEEEEEEC
T ss_pred EEEEcCHHHCC-------CCcccccEEEECchHhhccCHHHHHHHHH--HhCCCCCEEEEEec
Confidence 99999987631 2357899999986543 345667777765 48999999999753
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=99.44 E-value=6.9e-13 Score=131.76 Aligned_cols=106 Identities=15% Similarity=0.195 Sum_probs=83.3
Q ss_pred CCCCeEEEECCCcchHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCC
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGP 231 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~--Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~ 231 (317)
.++.+|||+|||+|..++.+++. +..+|+++|+++.++ +.+++|++.+|+.+ ++++++|+.++.... .+.
T Consensus 104 ~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl-~~~~~n~~r~g~~n-v~v~~~Da~~l~~~~------~~~ 175 (456)
T 3m4x_A 104 KPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRA-KILSENIERWGVSN-AIVTNHAPAELVPHF------SGF 175 (456)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHH-HHHHHHHHHHTCSS-EEEECCCHHHHHHHH------TTC
T ss_pred CCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHH-HHHHHHHHHcCCCc-eEEEeCCHHHhhhhc------ccc
Confidence 46889999999999999987764 346899999999999 99999999999975 999999998876433 368
Q ss_pred ccEEEECCCCCC-cc---------------H-------HHHHHHHHHcCCcCCCeEEEEEe
Q 021116 232 FDYMSVTPPYTA-VD---------------Y-------EVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 232 fDlV~~dPPy~~-~~---------------~-------~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
||+|++|||+.. +. . .++++.+ .++|+|||+++.++
T Consensus 176 FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a--~~~LkpGG~LvYsT 234 (456)
T 3m4x_A 176 FDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSA--IKMLKNKGQLIYST 234 (456)
T ss_dssp EEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHH--HHTEEEEEEEEEEE
T ss_pred CCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHH--HHhcCCCcEEEEEE
Confidence 999999999743 11 0 1223322 36899999987643
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=2.5e-13 Score=122.62 Aligned_cols=106 Identities=13% Similarity=0.030 Sum_probs=83.0
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
.++.+|||+|||+|..+..+++.+..+|++||+|+.++ +.|+++.+..+. +++++.+|+.+....+ .+++||
T Consensus 59 ~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~-~~a~~~~~~~~~--~~~~~~~~a~~~~~~~-----~~~~FD 130 (236)
T 3orh_A 59 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVF-QRLRDWAPRQTH--KVIPLKGLWEDVAPTL-----PDGHFD 130 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHH-HHHHHHGGGCSS--EEEEEESCHHHHGGGS-----CTTCEE
T ss_pred cCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHH-HHHHHHHhhCCC--ceEEEeehHHhhcccc-----cccCCc
Confidence 36889999999999999888777666899999999999 999999987764 4789999998765432 457899
Q ss_pred EEEECCCCCCc------cHHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 234 YMSVTPPYTAV------DYEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 234 lV~~dPPy~~~------~~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
.|+.|+..... +.+..++.+. ++|+|||++++.+
T Consensus 131 ~i~~D~~~~~~~~~~~~~~~~~~~e~~--rvLkPGG~l~f~~ 170 (236)
T 3orh_A 131 GILYDTYPLSEETWHTHQFNFIKNHAF--RLLKPGGVLTYCN 170 (236)
T ss_dssp EEEECCCCCBGGGTTTHHHHHHHHTHH--HHEEEEEEEEECC
T ss_pred eEEEeeeecccchhhhcchhhhhhhhh--heeCCCCEEEEEe
Confidence 99999754322 2344444443 6999999998753
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.44 E-value=9.5e-13 Score=118.32 Aligned_cols=130 Identities=18% Similarity=0.092 Sum_probs=94.1
Q ss_pred CCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCce
Q 021116 130 RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVS 208 (317)
Q Consensus 130 rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas-~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v 208 (317)
++..+.+.+.+++.+...... ....+.+|||+|||+|.+++.++. ....+|++||+++.++ +.|++|++.+|+.+ +
T Consensus 46 ~~~~~~~~~~~~d~l~~~~~~-~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~-~~a~~~~~~~~~~~-v 122 (240)
T 1xdz_A 46 TEKKEVYLKHFYDSITAAFYV-DFNQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRI-TFLEKLSEALQLEN-T 122 (240)
T ss_dssp CSHHHHHHHTHHHHHGGGGTS-CGGGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHH-HHHHHHHHHHTCSS-E
T ss_pred CCHHHHHHHHHHHHHhHHHhc-ccCCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHH-HHHHHHHHHcCCCC-E
Confidence 344455666666655321000 002578999999999999998775 3345899999999999 99999999999865 9
Q ss_pred EEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCC
Q 021116 209 SIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPL 271 (317)
Q Consensus 209 ~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~ 271 (317)
+++++|+.++.... ...++||+|+++. ...+..+++.+. ++|+|||++++....
T Consensus 123 ~~~~~d~~~~~~~~----~~~~~fD~V~~~~---~~~~~~~l~~~~--~~LkpgG~l~~~~g~ 176 (240)
T 1xdz_A 123 TFCHDRAETFGQRK----DVRESYDIVTARA---VARLSVLSELCL--PLVKKNGLFVALKAA 176 (240)
T ss_dssp EEEESCHHHHTTCT----TTTTCEEEEEEEC---CSCHHHHHHHHG--GGEEEEEEEEEEECC
T ss_pred EEEeccHHHhcccc----cccCCccEEEEec---cCCHHHHHHHHH--HhcCCCCEEEEEeCC
Confidence 99999998753100 0136899999975 245677777764 589999999987654
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=9.4e-13 Score=121.26 Aligned_cols=105 Identities=7% Similarity=0.016 Sum_probs=81.7
Q ss_pred CCCCeEEEECCCcchHHHHHHHcC---CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCC
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRG---CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDG 230 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~G---a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~ 230 (317)
.++.+|||+|||||.+++.++++. ..+|++||+++.++ +.|+++++..+...+++++++|+.++ ..+
T Consensus 69 ~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml-~~A~~~~~~~~~~~~v~~~~~D~~~~---------~~~ 138 (261)
T 4gek_A 69 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMI-ERCRRHIDAYKAPTPVDVIEGDIRDI---------AIE 138 (261)
T ss_dssp CTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHH-HHHHHHHHTSCCSSCEEEEESCTTTC---------CCC
T ss_pred CCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHH-HHHHHHHHhhccCceEEEeecccccc---------ccc
Confidence 468899999999999999887652 23799999999999 99999999888888899999998764 136
Q ss_pred CccEEEECCCCCCc---cHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 231 PFDYMSVTPPYTAV---DYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 231 ~fDlV~~dPPy~~~---~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
.||+|++.--.+.- ....+++.+. +.|+|||++++...
T Consensus 139 ~~d~v~~~~~l~~~~~~~~~~~l~~i~--~~LkpGG~lii~e~ 179 (261)
T 4gek_A 139 NASMVVLNFTLQFLEPSERQALLDKIY--QGLNPGGALVLSEK 179 (261)
T ss_dssp SEEEEEEESCGGGSCHHHHHHHHHHHH--HHEEEEEEEEEEEE
T ss_pred ccccceeeeeeeecCchhHhHHHHHHH--HHcCCCcEEEEEec
Confidence 79999986322111 1234555554 58999999988654
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.43 E-value=2.8e-13 Score=123.38 Aligned_cols=124 Identities=12% Similarity=0.054 Sum_probs=92.5
Q ss_pred CCCCeEEEECCCcchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF 232 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~f 232 (317)
.++.+|||+|||+|.+++.++..| +.+|+++|+|+.++ +.|++|++.+|+.++++++.+|+.+.+.. ...|
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al-~~A~~N~~~~gl~~~I~~~~gD~l~~~~~-------~~~~ 91 (230)
T 3lec_A 20 PKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPY-QSALKNVSEHGLTSKIDVRLANGLSAFEE-------ADNI 91 (230)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHH-HHHHHHHHHTTCTTTEEEEECSGGGGCCG-------GGCC
T ss_pred CCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHHHHcCCCCcEEEEECchhhcccc-------cccc
Confidence 357899999999999999998887 56899999999999 99999999999999999999998876421 1369
Q ss_pred cEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCCCCCc-cc--cCCCeEEEEEe
Q 021116 233 DYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDM-LD--TCGCLVKIKDR 288 (317)
Q Consensus 233 DlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~~~l-~~--~~~~~~~~~~r 288 (317)
|+|++... +...+.++++... ..|+++|++++.-...... .. ...||.+.++.
T Consensus 92 D~IviaGm-Gg~lI~~IL~~~~--~~l~~~~~lIlqp~~~~~~lr~~L~~~Gf~i~~E~ 147 (230)
T 3lec_A 92 DTITICGM-GGRLIADILNNDI--DKLQHVKTLVLQPNNREDDLRKWLAANDFEIVAED 147 (230)
T ss_dssp CEEEEEEE-CHHHHHHHHHHTG--GGGTTCCEEEEEESSCHHHHHHHHHHTTEEEEEEE
T ss_pred CEEEEeCC-chHHHHHHHHHHH--HHhCcCCEEEEECCCChHHHHHHHHHCCCEEEEEE
Confidence 99876310 1112344444432 4789999999987654321 11 14678887765
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.43 E-value=1.1e-12 Score=115.48 Aligned_cols=121 Identities=10% Similarity=0.032 Sum_probs=90.5
Q ss_pred hHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHhHHHhCCCC----c
Q 021116 133 MEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGC-SEVHFVEMDPWVVSNVLIPNLEWTGFLD----V 207 (317)
Q Consensus 133 ~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga-~~V~aVDin~~al~~~ar~N~~~~gl~~----~ 207 (317)
.....+.+.+.+.. .++.+|||+|||+|.++..+++++. .+|+++|+++.++ +.|++|++.+++.+ +
T Consensus 14 ~~~~~~~l~~~l~~-------~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~-~~a~~~~~~~~~~~~~~~~ 85 (217)
T 3jwh_A 14 NQQRMNGVVAALKQ-------SNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSL-EIAQERLDRLRLPRNQWER 85 (217)
T ss_dssp HHHHHHHHHHHHHH-------TTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHH-HHHHHHHTTCCCCHHHHTT
T ss_pred HHHHHHHHHHHHHh-------cCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHH-HHHHHHHHHhcCCcccCcc
Confidence 34455566666665 3578999999999999999888753 5899999999999 99999998888764 6
Q ss_pred eEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCc---cHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 208 SSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAV---DYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 208 v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~---~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
++++++|+.... ...++||+|++.-.+..- .....++.+. ++|+|||++++..+
T Consensus 86 v~~~~~d~~~~~-------~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~--~~LkpgG~li~~~~ 142 (217)
T 3jwh_A 86 LQLIQGALTYQD-------KRFHGYDAATVIEVIEHLDLSRLGAFERVLF--EFAQPKIVIVTTPN 142 (217)
T ss_dssp EEEEECCTTSCC-------GGGCSCSEEEEESCGGGCCHHHHHHHHHHHH--TTTCCSEEEEEEEB
T ss_pred eEEEeCCccccc-------ccCCCcCEEeeHHHHHcCCHHHHHHHHHHHH--HHcCCCEEEEEccC
Confidence 999999975321 123689999987543321 2345555554 69999998877655
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=5e-13 Score=127.72 Aligned_cols=104 Identities=16% Similarity=0.104 Sum_probs=85.3
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
.++.+|||+|||+|.+++.+++.|+.+|++||+++ ++ +.|++|++.+++.++++++++|+.++. ...++||
T Consensus 65 ~~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s~-~l-~~a~~~~~~~~~~~~v~~~~~d~~~~~-------~~~~~fD 135 (349)
T 3q7e_A 65 FKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSS-IS-DYAVKIVKANKLDHVVTIIKGKVEEVE-------LPVEKVD 135 (349)
T ss_dssp HTTCEEEEESCTTSHHHHHHHHTTCSEEEEEECST-HH-HHHHHHHHHTTCTTTEEEEESCTTTCC-------CSSSCEE
T ss_pred CCCCEEEEEeccchHHHHHHHHCCCCEEEEECcHH-HH-HHHHHHHHHcCCCCcEEEEECcHHHcc-------CCCCceE
Confidence 35789999999999999999998888999999995 88 999999999999888999999998751 2347899
Q ss_pred EEEECCCCC----CccHHHHHHHHHHcCCcCCCeEEEEE
Q 021116 234 YMSVTPPYT----AVDYEVLMAQISKSALVGKDSFIVVE 268 (317)
Q Consensus 234 lV~~dPPy~----~~~~~~~l~~L~~~~lLkpgG~ivv~ 268 (317)
+|+++++.. ....+.++..+. ++|+|||+++.+
T Consensus 136 ~Iis~~~~~~l~~~~~~~~~l~~~~--r~LkpgG~li~~ 172 (349)
T 3q7e_A 136 IIISEWMGYCLFYESMLNTVLHARD--KWLAPDGLIFPD 172 (349)
T ss_dssp EEEECCCBBTBTBTCCHHHHHHHHH--HHEEEEEEEESC
T ss_pred EEEEccccccccCchhHHHHHHHHH--HhCCCCCEEccc
Confidence 999997522 134566666654 589999998743
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=7e-13 Score=126.35 Aligned_cols=102 Identities=14% Similarity=0.120 Sum_probs=83.4
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
.++.+|||+|||+|.+++.+++.|+.+|+++|+++ ++ +.|++|++.+++.++++++++|+.++. ...++||
T Consensus 63 ~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~-~~a~~~~~~~~~~~~i~~~~~d~~~~~-------~~~~~~D 133 (340)
T 2fyt_A 63 FKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-IL-YQAMDIIRLNKLEDTITLIKGKIEEVH-------LPVEKVD 133 (340)
T ss_dssp TTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HH-HHHHHHHHHTTCTTTEEEEESCTTTSC-------CSCSCEE
T ss_pred cCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HH-HHHHHHHHHcCCCCcEEEEEeeHHHhc-------CCCCcEE
Confidence 46789999999999999999988877899999997 88 999999999999778999999987641 2246899
Q ss_pred EEEECC-CCCC---ccHHHHHHHHHHcCCcCCCeEEE
Q 021116 234 YMSVTP-PYTA---VDYEVLMAQISKSALVGKDSFIV 266 (317)
Q Consensus 234 lV~~dP-Py~~---~~~~~~l~~L~~~~lLkpgG~iv 266 (317)
+|++++ +|.. .....++..+. ++|+|||+++
T Consensus 134 ~Ivs~~~~~~l~~~~~~~~~l~~~~--~~LkpgG~li 168 (340)
T 2fyt_A 134 VIISEWMGYFLLFESMLDSVLYAKN--KYLAKGGSVY 168 (340)
T ss_dssp EEEECCCBTTBTTTCHHHHHHHHHH--HHEEEEEEEE
T ss_pred EEEEcCchhhccCHHHHHHHHHHHH--hhcCCCcEEE
Confidence 999997 4543 23455555554 5899999988
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.43 E-value=3.1e-13 Score=128.96 Aligned_cols=103 Identities=13% Similarity=0.067 Sum_probs=83.2
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
.++.+|||+|||+|.+++.+++.|+.+|++||+++ ++ +.|++|++.+|+.++++++.+|+.++. ..++||
T Consensus 49 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~-~~a~~~~~~~~l~~~v~~~~~d~~~~~--------~~~~~D 118 (348)
T 2y1w_A 49 FKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MA-QHAEVLVKSNNLTDRIVVIPGKVEEVS--------LPEQVD 118 (348)
T ss_dssp TTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HH-HHHHHHHHHTTCTTTEEEEESCTTTCC--------CSSCEE
T ss_pred CCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HH-HHHHHHHHHcCCCCcEEEEEcchhhCC--------CCCcee
Confidence 46789999999999999999988888999999996 77 899999999999888999999987641 125799
Q ss_pred EEEECCCCCCc---cHHHHHHHHHHcCCcCCCeEEEEE
Q 021116 234 YMSVTPPYTAV---DYEVLMAQISKSALVGKDSFIVVE 268 (317)
Q Consensus 234 lV~~dPPy~~~---~~~~~l~~L~~~~lLkpgG~ivv~ 268 (317)
+|++++++... .+.+.+..+ .++|+|||+++++
T Consensus 119 ~Ivs~~~~~~~~~~~~~~~l~~~--~~~LkpgG~li~~ 154 (348)
T 2y1w_A 119 IIISEPMGYMLFNERMLESYLHA--KKYLKPSGNMFPT 154 (348)
T ss_dssp EEEECCCBTTBTTTSHHHHHHHG--GGGEEEEEEEESC
T ss_pred EEEEeCchhcCChHHHHHHHHHH--HhhcCCCeEEEEe
Confidence 99999874322 233444433 3699999999855
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.43 E-value=5.5e-13 Score=116.00 Aligned_cols=116 Identities=15% Similarity=0.178 Sum_probs=82.6
Q ss_pred CCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceE
Q 021116 130 RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSS 209 (317)
Q Consensus 130 rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ 209 (317)
.++...+...+...+.... ..++.+|||+|||+|.+++.++..|..+|+++|+|+.++ +.|++|+. +++
T Consensus 30 ~~~~~~~~~~l~~~~~~~~----~~~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~-~~a~~~~~------~~~ 98 (200)
T 1ne2_A 30 YPTDASTAAYFLIEIYNDG----NIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAI-ETAKRNCG------GVN 98 (200)
T ss_dssp CCCCHHHHHHHHHHHHHHT----SSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHH-HHHHHHCT------TSE
T ss_pred cCCCHHHHHHHHHHHHhcC----CCCCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHH-HHHHHhcC------CCE
Confidence 4455556666665554221 136789999999999999998888777899999999999 99999976 378
Q ss_pred EEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCcc---HHHHHHHHHHcCCcCCCeEEEEEeCC
Q 021116 210 IHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVD---YEVLMAQISKSALVGKDSFIVVEYPL 271 (317)
Q Consensus 210 ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~---~~~~l~~L~~~~lLkpgG~ivv~~~~ 271 (317)
++++|+.++ .++||+|++||||+... ....++.+.. .+ |.+++.++.
T Consensus 99 ~~~~d~~~~----------~~~~D~v~~~~p~~~~~~~~~~~~l~~~~~--~~---g~~~~~~~~ 148 (200)
T 1ne2_A 99 FMVADVSEI----------SGKYDTWIMNPPFGSVVKHSDRAFIDKAFE--TS---MWIYSIGNA 148 (200)
T ss_dssp EEECCGGGC----------CCCEEEEEECCCC-------CHHHHHHHHH--HE---EEEEEEEEG
T ss_pred EEECcHHHC----------CCCeeEEEECCCchhccCchhHHHHHHHHH--hc---CcEEEEEcC
Confidence 999998763 26899999999987532 2344555442 34 556665543
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=6.7e-13 Score=138.17 Aligned_cols=158 Identities=18% Similarity=0.129 Sum_probs=108.5
Q ss_pred CCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCC-------------------------------
Q 021116 130 RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGC------------------------------- 178 (317)
Q Consensus 130 rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga------------------------------- 178 (317)
-|..+.++.++...... ..+..+||+|||||++.|+|+..+.
T Consensus 172 apl~e~LAa~ll~~~~~-------~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea 244 (703)
T 3v97_A 172 APIKETLAAAIVMRSGW-------QPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEA 244 (703)
T ss_dssp CSSCHHHHHHHHHHTTC-------CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHhhCC-------CCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHH
Confidence 46778888887766543 3578999999999999999876431
Q ss_pred ------------CEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCc--
Q 021116 179 ------------SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAV-- 244 (317)
Q Consensus 179 ------------~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~-- 244 (317)
.+|+|+|+|+.++ +.|++|++.+|+.+.+++.++|+.++.. +...+.||+|++||||+..
T Consensus 245 ~~~~~~~~~~~~~~i~G~Did~~av-~~A~~N~~~agv~~~i~~~~~D~~~~~~-----~~~~~~~d~Iv~NPPYG~Rlg 318 (703)
T 3v97_A 245 QTRARKGLAEYSSHFYGSDSDARVI-QRARTNARLAGIGELITFEVKDVAQLTN-----PLPKGPYGTVLSNPPYGERLD 318 (703)
T ss_dssp HHHHHHHHHHCCCCEEEEESCHHHH-HHHHHHHHHTTCGGGEEEEECCGGGCCC-----SCTTCCCCEEEECCCCCC---
T ss_pred HHHhhhccccCCccEEEEECCHHHH-HHHHHHHHHcCCCCceEEEECChhhCcc-----ccccCCCCEEEeCCCcccccc
Confidence 3699999999999 9999999999998889999999987421 1112379999999999753
Q ss_pred ---cHHHHHHHHHH-cCCcCCCeEEEEEeCCCCCccccCCCeEEEEEee--cCceEEEEEeech
Q 021116 245 ---DYEVLMAQISK-SALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDRR--FGRTHLAIYGPDW 302 (317)
Q Consensus 245 ---~~~~~l~~L~~-~~lLkpgG~ivv~~~~~~~l~~~~~~~~~~~~r~--yG~~~l~~~~p~~ 302 (317)
...++...+.+ .+.+.+||.+++-++.. .+.. .-++...+.++ -|..+..+|....
T Consensus 319 ~~~~l~~ly~~l~~~lk~~~~g~~~~ilt~~~-~l~~-~~glk~~k~~~l~nG~l~~~~~~y~~ 380 (703)
T 3v97_A 319 SEPALIALHSLLGRIMKNQFGGWNLSLFSASP-DLLS-CLQLRADKQYKAKNGPLDCVQKNYHV 380 (703)
T ss_dssp CCHHHHHHHHHHHHHHHHHCTTCEEEEEESCH-HHHH-TTCCCEEEEEEEEETTEEEEEEEEEC
T ss_pred chhHHHHHHHHHHHHHHhhCCCCeEEEEeCCH-HHHH-HhCCCcccceeeecCCEEEEEEEEEe
Confidence 22333333321 12356899999887643 3322 23344333322 4666777765443
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=8.4e-13 Score=120.59 Aligned_cols=106 Identities=18% Similarity=0.125 Sum_probs=84.9
Q ss_pred CCCeEEEECCCcchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~-Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
.+.+|||+|||+|..++.++.. +..+|++||+++.++ +.|++|++.+|+.+ ++++++|+.++... +...++||
T Consensus 80 ~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~-~~a~~~~~~~~l~~-v~~~~~d~~~~~~~----~~~~~~fD 153 (249)
T 3g89_A 80 GPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKV-AFVERAIEVLGLKG-ARALWGRAEVLARE----AGHREAYA 153 (249)
T ss_dssp SSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHH-HHHHHHHHHHTCSS-EEEEECCHHHHTTS----TTTTTCEE
T ss_pred CCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHH-HHHHHHHHHhCCCc-eEEEECcHHHhhcc----cccCCCce
Confidence 5789999999999999987764 456899999999999 99999999999976 99999999876421 00136899
Q ss_pred EEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCC
Q 021116 234 YMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPL 271 (317)
Q Consensus 234 lV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~ 271 (317)
+|+++- ...+..+++.+. ++|+|||++++....
T Consensus 154 ~I~s~a---~~~~~~ll~~~~--~~LkpgG~l~~~~g~ 186 (249)
T 3g89_A 154 RAVARA---VAPLCVLSELLL--PFLEVGGAAVAMKGP 186 (249)
T ss_dssp EEEEES---SCCHHHHHHHHG--GGEEEEEEEEEEECS
T ss_pred EEEECC---cCCHHHHHHHHH--HHcCCCeEEEEEeCC
Confidence 999973 335666777664 689999999886653
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.43 E-value=5.1e-13 Score=114.41 Aligned_cols=120 Identities=13% Similarity=0.064 Sum_probs=82.9
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccE
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDl 234 (317)
++.+|||+|||+|.+++.++.++ +|+++|+|+.++ +. .++++++++|+.+.+ ..++||+
T Consensus 23 ~~~~vLD~GcG~G~~~~~l~~~~--~v~gvD~s~~~~-~~----------~~~~~~~~~d~~~~~--------~~~~fD~ 81 (170)
T 3q87_B 23 EMKIVLDLGTSTGVITEQLRKRN--TVVSTDLNIRAL-ES----------HRGGNLVRADLLCSI--------NQESVDV 81 (170)
T ss_dssp CSCEEEEETCTTCHHHHHHTTTS--EEEEEESCHHHH-HT----------CSSSCEEECSTTTTB--------CGGGCSE
T ss_pred CCCeEEEeccCccHHHHHHHhcC--cEEEEECCHHHH-hc----------ccCCeEEECChhhhc--------ccCCCCE
Confidence 56799999999999999988887 899999999998 65 245789999987642 2368999
Q ss_pred EEECCCCCCc----------cHHHHHHHHHHcCCcCCCeEEEEEeCCCCCccc-----cCCCeEEE--EEeecCceEEEE
Q 021116 235 MSVTPPYTAV----------DYEVLMAQISKSALVGKDSFIVVEYPLRTDMLD-----TCGCLVKI--KDRRFGRTHLAI 297 (317)
Q Consensus 235 V~~dPPy~~~----------~~~~~l~~L~~~~lLkpgG~ivv~~~~~~~l~~-----~~~~~~~~--~~r~yG~~~l~~ 297 (317)
|++||||... .....++.+.. .+ |||++++.........+ ...+|... .++.+|..++..
T Consensus 82 i~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l-pgG~l~~~~~~~~~~~~l~~~l~~~gf~~~~~~~~~~~~e~~~~ 158 (170)
T 3q87_B 82 VVFNPPYVPDTDDPIIGGGYLGREVIDRFVD--AV-TVGMLYLLVIEANRPKEVLARLEERGYGTRILKVRKILGETVYI 158 (170)
T ss_dssp EEECCCCBTTCCCTTTBCCGGGCHHHHHHHH--HC-CSSEEEEEEEGGGCHHHHHHHHHHTTCEEEEEEEEECSSSEEEE
T ss_pred EEECCCCccCCccccccCCcchHHHHHHHHh--hC-CCCEEEEEEecCCCHHHHHHHHHHCCCcEEEEEeeccCCceEEE
Confidence 9999999731 12334444432 34 99999987754333211 12456543 344566555544
Q ss_pred E
Q 021116 298 Y 298 (317)
Q Consensus 298 ~ 298 (317)
+
T Consensus 159 ~ 159 (170)
T 3q87_B 159 I 159 (170)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.42 E-value=9.8e-13 Score=124.54 Aligned_cols=114 Identities=16% Similarity=0.107 Sum_probs=89.1
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecH
Q 021116 136 VKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRV 215 (317)
Q Consensus 136 v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~ 215 (317)
..+++...+.. .++.+|||+|||+|.+++.+++.|+.+|+++|++ .++ +.|++|++.+++.++++++++|+
T Consensus 26 y~~ai~~~~~~-------~~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s-~~~-~~a~~~~~~~~~~~~i~~~~~d~ 96 (328)
T 1g6q_1 26 YRNAIIQNKDL-------FKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMS-SII-EMAKELVELNGFSDKITLLRGKL 96 (328)
T ss_dssp HHHHHHHHHHH-------HTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESS-THH-HHHHHHHHHTTCTTTEEEEESCT
T ss_pred HHHHHHhhHhh-------cCCCEEEEecCccHHHHHHHHHCCCCEEEEEChH-HHH-HHHHHHHHHcCCCCCEEEEECch
Confidence 44555544443 3578999999999999999998888899999999 588 99999999999988899999998
Q ss_pred HHHHHHHhhhcCCCCCccEEEECCCCCC----ccHHHHHHHHHHcCCcCCCeEEEE
Q 021116 216 ETFLERAEQFVGKDGPFDYMSVTPPYTA----VDYEVLMAQISKSALVGKDSFIVV 267 (317)
Q Consensus 216 ~~~l~~~~~~~~~~~~fDlV~~dPPy~~----~~~~~~l~~L~~~~lLkpgG~ivv 267 (317)
.++. ...++||+|+++++... ...+.++..+. ++|+|||+++.
T Consensus 97 ~~~~-------~~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~--~~LkpgG~li~ 143 (328)
T 1g6q_1 97 EDVH-------LPFPKVDIIISEWMGYFLLYESMMDTVLYARD--HYLVEGGLIFP 143 (328)
T ss_dssp TTSC-------CSSSCEEEEEECCCBTTBSTTCCHHHHHHHHH--HHEEEEEEEES
T ss_pred hhcc-------CCCCcccEEEEeCchhhcccHHHHHHHHHHHH--hhcCCCeEEEE
Confidence 7642 12368999999987322 23455555554 48999999973
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.42 E-value=1.3e-12 Score=115.91 Aligned_cols=108 Identities=9% Similarity=0.086 Sum_probs=84.4
Q ss_pred CCCeEEEECCCcchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
.+.+|||+|||+|.+++.++... ..+|++||+++.++ +.|++|++.+++. +++++++|+.++...+ ..++||
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l-~~a~~~~~~~~~~-nv~~~~~d~~~l~~~~-----~~~~~d 110 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVI-VTAVQKVKDSEAQ-NVKLLNIDADTLTDVF-----EPGEVK 110 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHH-HHHHHHHHHSCCS-SEEEECCCGGGHHHHC-----CTTSCC
T ss_pred CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHH-HHHHHHHHHcCCC-CEEEEeCCHHHHHhhc-----CcCCcC
Confidence 46799999999999999887753 45899999999999 9999999999885 4999999998753322 246799
Q ss_pred EEEECCC--CCCc-------cHHHHHHHHHHcCCcCCCeEEEEEeCC
Q 021116 234 YMSVTPP--YTAV-------DYEVLMAQISKSALVGKDSFIVVEYPL 271 (317)
Q Consensus 234 lV~~dPP--y~~~-------~~~~~l~~L~~~~lLkpgG~ivv~~~~ 271 (317)
.|+++.| +... .+...++.+. ++|+|||++++.+..
T Consensus 111 ~v~~~~~~p~~~~~~~~~rl~~~~~l~~~~--~~LkpgG~l~~~td~ 155 (213)
T 2fca_A 111 RVYLNFSDPWPKKRHEKRRLTYSHFLKKYE--EVMGKGGSIHFKTDN 155 (213)
T ss_dssp EEEEESCCCCCSGGGGGGSTTSHHHHHHHH--HHHTTSCEEEEEESC
T ss_pred EEEEECCCCCcCccccccccCcHHHHHHHH--HHcCCCCEEEEEeCC
Confidence 9988633 3321 1356666665 489999999998854
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=2.2e-12 Score=119.46 Aligned_cols=104 Identities=14% Similarity=0.102 Sum_probs=86.2
Q ss_pred CCCCeEEEECCCcchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF 232 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~-Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~f 232 (317)
.++.+|||+|||+|.+++.++.. | .+|+++|+++.++ +.|++++...|+.++++++.+|+.++ +++|
T Consensus 71 ~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~~----------~~~f 138 (302)
T 3hem_A 71 EPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQY-AHDKAMFDEVDSPRRKEVRIQGWEEF----------DEPV 138 (302)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHH-HHHHHHHHHSCCSSCEEEEECCGGGC----------CCCC
T ss_pred CCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHH-HHHHHHHHhcCCCCceEEEECCHHHc----------CCCc
Confidence 36789999999999999998887 7 5799999999999 99999999999987899999999765 3789
Q ss_pred cEEEECCCCCC----------ccHHHHHHHHHHcCCcCCCeEEEEEeCC
Q 021116 233 DYMSVTPPYTA----------VDYEVLMAQISKSALVGKDSFIVVEYPL 271 (317)
Q Consensus 233 DlV~~dPPy~~----------~~~~~~l~~L~~~~lLkpgG~ivv~~~~ 271 (317)
|+|++...+.. ..+...++.+. ++|+|||++++....
T Consensus 139 D~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~--~~LkpgG~l~i~~~~ 185 (302)
T 3hem_A 139 DRIVSLGAFEHFADGAGDAGFERYDTFFKKFY--NLTPDDGRMLLHTIT 185 (302)
T ss_dssp SEEEEESCGGGTTCCSSCCCTTHHHHHHHHHH--HSSCTTCEEEEEEEE
T ss_pred cEEEEcchHHhcCccccccchhHHHHHHHHHH--HhcCCCcEEEEEEEe
Confidence 99998654321 23456677665 599999999987653
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=5.6e-12 Score=108.25 Aligned_cols=103 Identities=15% Similarity=0.205 Sum_probs=83.3
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
.++.+|||+|||+|.++..++..|. +|+++|+++.++ +.+++|++..++.+ ++++.+|+.+.. . .++||
T Consensus 31 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~-~~a~~~~~~~~~~~-~~~~~~d~~~~~-------~-~~~~D 99 (199)
T 2xvm_A 31 VKPGKTLDLGCGNGRNSLYLAANGY-DVDAWDKNAMSI-ANVERIKSIENLDN-LHTRVVDLNNLT-------F-DRQYD 99 (199)
T ss_dssp SCSCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHHHHHTCTT-EEEEECCGGGCC-------C-CCCEE
T ss_pred cCCCeEEEEcCCCCHHHHHHHHCCC-eEEEEECCHHHH-HHHHHHHHhCCCCC-cEEEEcchhhCC-------C-CCCce
Confidence 3577999999999999999888865 799999999999 99999999888754 999999987642 1 47899
Q ss_pred EEEECCCCCCc---cHHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 234 YMSVTPPYTAV---DYEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 234 lV~~dPPy~~~---~~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
+|++...+... .....++.+. ++|+|||++++..
T Consensus 100 ~v~~~~~l~~~~~~~~~~~l~~~~--~~L~~gG~l~~~~ 136 (199)
T 2xvm_A 100 FILSTVVLMFLEAKTIPGLIANMQ--RCTKPGGYNLIVA 136 (199)
T ss_dssp EEEEESCGGGSCGGGHHHHHHHHH--HTEEEEEEEEEEE
T ss_pred EEEEcchhhhCCHHHHHHHHHHHH--HhcCCCeEEEEEE
Confidence 99998765422 4566676665 4899999977653
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.3e-12 Score=116.78 Aligned_cols=107 Identities=12% Similarity=0.080 Sum_probs=87.1
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
.++.+|||+|||+|.++..+++....+|+++|+++.++ +.++++++..++.++++++.+|+.+. +..+++||
T Consensus 60 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~-~~a~~~~~~~~~~~~~~~~~~d~~~~-------~~~~~~fD 131 (273)
T 3bus_A 60 RSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQV-NQANARATAAGLANRVTFSYADAMDL-------PFEDASFD 131 (273)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHH-HHHHHHHHHTTCTTTEEEEECCTTSC-------CSCTTCEE
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHH-HHHHHHHHhcCCCcceEEEECccccC-------CCCCCCcc
Confidence 36789999999999999988775345899999999999 99999999999888899999998753 22347899
Q ss_pred EEEECCCCC-CccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 234 YMSVTPPYT-AVDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 234 lV~~dPPy~-~~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
+|++...+. ..+....++.+. ++|+|||++++...
T Consensus 132 ~v~~~~~l~~~~~~~~~l~~~~--~~L~pgG~l~i~~~ 167 (273)
T 3bus_A 132 AVWALESLHHMPDRGRALREMA--RVLRPGGTVAIADF 167 (273)
T ss_dssp EEEEESCTTTSSCHHHHHHHHH--TTEEEEEEEEEEEE
T ss_pred EEEEechhhhCCCHHHHHHHHH--HHcCCCeEEEEEEe
Confidence 999866543 345677777765 69999999988753
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.9e-12 Score=118.62 Aligned_cols=102 Identities=13% Similarity=0.129 Sum_probs=84.3
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccE
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDl 234 (317)
++.+|||+|||+|.+++.++..|. +|+++|+++.++ +.+++|++.+++ +++++.+|+.+.. ..++||+
T Consensus 120 ~~~~vLD~GcG~G~~~~~l~~~g~-~v~~vD~s~~~~-~~a~~~~~~~~~--~~~~~~~d~~~~~--------~~~~fD~ 187 (286)
T 3m70_A 120 SPCKVLDLGCGQGRNSLYLSLLGY-DVTSWDHNENSI-AFLNETKEKENL--NISTALYDINAAN--------IQENYDF 187 (286)
T ss_dssp CSCEEEEESCTTCHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHHHHTTC--CEEEEECCGGGCC--------CCSCEEE
T ss_pred CCCcEEEECCCCCHHHHHHHHCCC-eEEEEECCHHHH-HHHHHHHHHcCC--ceEEEEecccccc--------ccCCccE
Confidence 578999999999999999988876 799999999999 999999999987 5899999987642 1478999
Q ss_pred EEECCCCCC---ccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 235 MSVTPPYTA---VDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 235 V~~dPPy~~---~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
|+++.++.. ......++.+. ++|+|||++++.+.
T Consensus 188 i~~~~~~~~~~~~~~~~~l~~~~--~~LkpgG~l~i~~~ 224 (286)
T 3m70_A 188 IVSTVVFMFLNRERVPSIIKNMK--EHTNVGGYNLIVAA 224 (286)
T ss_dssp EEECSSGGGSCGGGHHHHHHHHH--HTEEEEEEEEEEEE
T ss_pred EEEccchhhCCHHHHHHHHHHHH--HhcCCCcEEEEEEe
Confidence 999887643 23456666665 48999999776554
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.41 E-value=2.5e-12 Score=115.34 Aligned_cols=110 Identities=11% Similarity=0.024 Sum_probs=87.0
Q ss_pred CCCeEEEECCCcchHHHHHHHcC--CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhh--------
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRG--CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQ-------- 224 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~G--a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~-------- 224 (317)
++.+|||+|||+|..++.+++.. ..+|+++|+++.++ +.|++|++.+|+.++++++.+|+.+.+.....
T Consensus 60 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~-~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 138 (239)
T 2hnk_A 60 GAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWT-NVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWA 138 (239)
T ss_dssp TCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHH-HHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGG
T ss_pred CcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHH-HHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhccccccc
Confidence 47899999999999999887763 45899999999999 99999999999887899999999886653310
Q ss_pred hcCC-C-CCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 225 FVGK-D-GPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 225 ~~~~-~-~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
.... . ++||+|++|.. ...+...++.+. ++|+|||++++..
T Consensus 139 ~~f~~~~~~fD~I~~~~~--~~~~~~~l~~~~--~~L~pgG~lv~~~ 181 (239)
T 2hnk_A 139 SDFAFGPSSIDLFFLDAD--KENYPNYYPLIL--KLLKPGGLLIADN 181 (239)
T ss_dssp TTTCCSTTCEEEEEECSC--GGGHHHHHHHHH--HHEEEEEEEEEEC
T ss_pred ccccCCCCCcCEEEEeCC--HHHHHHHHHHHH--HHcCCCeEEEEEc
Confidence 0001 1 67999999953 345667777665 4899999999975
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.40 E-value=3.2e-13 Score=134.84 Aligned_cols=106 Identities=13% Similarity=0.084 Sum_probs=83.4
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
.++.+|||+|||+|.+++.++..|+.+|+++|+++ ++ +.|++|++.+|+.++++++.+|+.++. ..++||
T Consensus 157 ~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l-~~A~~~~~~~gl~~~v~~~~~d~~~~~--------~~~~fD 226 (480)
T 3b3j_A 157 FKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MA-QHAEVLVKSNNLTDRIVVIPGKVEEVS--------LPEQVD 226 (480)
T ss_dssp TTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HH-HHHHHHHHHTTCTTTEEEEESCTTTCC--------CSSCEE
T ss_pred cCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HH-HHHHHHHHHcCCCCcEEEEECchhhCc--------cCCCeE
Confidence 35789999999999999998888877999999999 88 999999999999888999999987641 125799
Q ss_pred EEEECCCCCCccHHHHHHHHH-HcCCcCCCeEEEEEe
Q 021116 234 YMSVTPPYTAVDYEVLMAQIS-KSALVGKDSFIVVEY 269 (317)
Q Consensus 234 lV~~dPPy~~~~~~~~l~~L~-~~~lLkpgG~ivv~~ 269 (317)
+|+++++......+..++.+. ..++|+|||+++++.
T Consensus 227 ~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~~~ 263 (480)
T 3b3j_A 227 IIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPTI 263 (480)
T ss_dssp EEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEESCE
T ss_pred EEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 999998832111133333332 247999999998644
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.40 E-value=1.7e-12 Score=114.15 Aligned_cols=125 Identities=13% Similarity=0.102 Sum_probs=91.1
Q ss_pred CCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHhHHHhCCCC--
Q 021116 130 RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGC-SEVHFVEMDPWVVSNVLIPNLEWTGFLD-- 206 (317)
Q Consensus 130 rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga-~~V~aVDin~~al~~~ar~N~~~~gl~~-- 206 (317)
.+......+.+.+.+.. .++.+|||+|||+|.++..++..+. .+|+++|+++.++ +.+++|+..+++.+
T Consensus 11 ~~~~~~~~~~l~~~l~~-------~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~-~~a~~~~~~~~~~~~~ 82 (219)
T 3jwg_A 11 LNLNQQRLGTVVAVLKS-------VNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVL-ERAKDRLKIDRLPEMQ 82 (219)
T ss_dssp -CHHHHHHHHHHHHHHH-------TTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHH-HHHHHHHTGGGSCHHH
T ss_pred CcchHHHHHHHHHHHhh-------cCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHH-HHHHHHHHhhcccccc
Confidence 34445555566666654 3578999999999999998887764 5899999999999 99999998887754
Q ss_pred --ceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCcc---HHHHHHHHHHcCCcCCCeEEEEEeCC
Q 021116 207 --VSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVD---YEVLMAQISKSALVGKDSFIVVEYPL 271 (317)
Q Consensus 207 --~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~---~~~~l~~L~~~~lLkpgG~ivv~~~~ 271 (317)
+++++++|+.... ...++||+|++.-....-. ....++.+. ++|+|||++++..+.
T Consensus 83 ~~~v~~~~~d~~~~~-------~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~--~~LkpgG~~i~~~~~ 143 (219)
T 3jwg_A 83 RKRISLFQSSLVYRD-------KRFSGYDAATVIEVIEHLDENRLQAFEKVLF--EFTRPQTVIVSTPNK 143 (219)
T ss_dssp HTTEEEEECCSSSCC-------GGGTTCSEEEEESCGGGCCHHHHHHHHHHHH--TTTCCSEEEEEEEBG
T ss_pred CcceEEEeCcccccc-------cccCCCCEEEEHHHHHhCCHHHHHHHHHHHH--HhhCCCEEEEEccch
Confidence 6999999984321 1236899999865432222 235555554 699999977766543
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=3.8e-12 Score=119.94 Aligned_cols=102 Identities=19% Similarity=0.103 Sum_probs=83.1
Q ss_pred CCCCeEEEECCCcchHH-HHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCc
Q 021116 154 LRPGRWLDLYSGTGSVG-IEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF 232 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~-Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~f 232 (317)
.++.+|||+|||+|.++ +.+++....+|++||+|++++ +.|++|++..|+ ++++++++|+.++. +.+|
T Consensus 121 ~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l-~~Ar~~~~~~gl-~~v~~v~gDa~~l~---------d~~F 189 (298)
T 3fpf_A 121 RRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIA-ELSRKVIEGLGV-DGVNVITGDETVID---------GLEF 189 (298)
T ss_dssp CTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHH-HHHHHHHHHHTC-CSEEEEESCGGGGG---------GCCC
T ss_pred CCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHH-HHHHHHHHhcCC-CCeEEEECchhhCC---------CCCc
Confidence 47899999999999776 444443334799999999999 999999999999 78999999998752 3789
Q ss_pred cEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 233 DYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 233 DlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
|+|+++- ...+..+.++.+. +.|+|||++++...
T Consensus 190 DvV~~~a--~~~d~~~~l~el~--r~LkPGG~Lvv~~~ 223 (298)
T 3fpf_A 190 DVLMVAA--LAEPKRRVFRNIH--RYVDTETRIIYRTY 223 (298)
T ss_dssp SEEEECT--TCSCHHHHHHHHH--HHCCTTCEEEEEEC
T ss_pred CEEEECC--CccCHHHHHHHHH--HHcCCCcEEEEEcC
Confidence 9999974 2346777888776 48999999998764
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=99.40 E-value=3.8e-13 Score=124.01 Aligned_cols=84 Identities=18% Similarity=0.117 Sum_probs=70.8
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCH-------HHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcC
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDP-------WVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~-------~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~ 227 (317)
++.+|||+|||+|.+++.+++.|+ +|+++|+|+ .++ +.|++|++.+++.++++++++|+.+++..+..
T Consensus 83 ~~~~VLDlgcG~G~~a~~lA~~g~-~V~~vD~s~~~~~ll~~~l-~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~--- 157 (258)
T 2r6z_A 83 AHPTVWDATAGLGRDSFVLASLGL-TVTAFEQHPAVACLLSDGI-RRALLNPETQDTAARINLHFGNAAEQMPALVK--- 157 (258)
T ss_dssp GCCCEEETTCTTCHHHHHHHHTTC-CEEEEECCHHHHHHHHHHH-HHHHHSHHHHHHHTTEEEEESCHHHHHHHHHH---
T ss_pred CcCeEEEeeCccCHHHHHHHHhCC-EEEEEECChhhhHHHHHHH-HHHHhHHHhhCCccCeEEEECCHHHHHHhhhc---
Confidence 468999999999999999988875 699999999 999 99999999998877799999999988754420
Q ss_pred CCCCccEEEECCCCCC
Q 021116 228 KDGPFDYMSVTPPYTA 243 (317)
Q Consensus 228 ~~~~fDlV~~dPPy~~ 243 (317)
...+||+|++||||..
T Consensus 158 ~~~~fD~V~~dP~~~~ 173 (258)
T 2r6z_A 158 TQGKPDIVYLDPMYPE 173 (258)
T ss_dssp HHCCCSEEEECCCC--
T ss_pred cCCCccEEEECCCCCC
Confidence 0157999999999864
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.40 E-value=9.7e-13 Score=124.12 Aligned_cols=106 Identities=13% Similarity=0.037 Sum_probs=82.8
Q ss_pred CCCCeEEEECCCcchHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCC
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGP 231 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~--Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~ 231 (317)
.++.+|||+|||+|..++.++.. +..+|+++|+++.++ +.+++|++.+|+.+ ++++++|+.++.. . .+.
T Consensus 117 ~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l-~~a~~~~~~~g~~~-v~~~~~D~~~~~~-~------~~~ 187 (315)
T 1ixk_A 117 KPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRL-RETRLNLSRLGVLN-VILFHSSSLHIGE-L------NVE 187 (315)
T ss_dssp CTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHH-HHHHHHHHHHTCCS-EEEESSCGGGGGG-G------CCC
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHH-HHHHHHHHHhCCCe-EEEEECChhhccc-c------ccc
Confidence 46789999999999999988764 335899999999999 99999999999864 9999999887532 1 367
Q ss_pred ccEEEECCCCCC-cc----------------------HHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 232 FDYMSVTPPYTA-VD----------------------YEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 232 fDlV~~dPPy~~-~~----------------------~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
||+|++|||+.. +. ...+++.+ .++|+|||++++.+-
T Consensus 188 fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~--~~~LkpGG~lv~stc 247 (315)
T 1ixk_A 188 FDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKG--LEVLKPGGILVYSTC 247 (315)
T ss_dssp EEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHH--HHHEEEEEEEEEEES
T ss_pred CCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHH--HHhCCCCCEEEEEeC
Confidence 999999999742 10 02333333 358999999988644
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.40 E-value=5.2e-12 Score=110.62 Aligned_cols=133 Identities=8% Similarity=0.016 Sum_probs=98.0
Q ss_pred CCCCeEEEECCCcchHHHHHHHcC--CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCC
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRG--CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGP 231 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~G--a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~ 231 (317)
.++.+|||+|||+|.++..++..+ ..+|+++|+++.++ +.++++++.+++. +++++.+|+.++. ..+++
T Consensus 36 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~-~~a~~~~~~~~~~-~~~~~~~d~~~~~-------~~~~~ 106 (219)
T 3dh0_A 36 KEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMV-NYAWEKVNKLGLK-NVEVLKSEENKIP-------LPDNT 106 (219)
T ss_dssp CTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHH-HHHHHHHHHHTCT-TEEEEECBTTBCS-------SCSSC
T ss_pred CCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHH-HHHHHHHHHcCCC-cEEEEecccccCC-------CCCCC
Confidence 357899999999999999888765 34899999999999 9999999999886 5999999987642 23578
Q ss_pred ccEEEECCCCC-CccHHHHHHHHHHcCCcCCCeEEEEEeCCCCC---------------ccc--cCCCeEEEEEeecCce
Q 021116 232 FDYMSVTPPYT-AVDYEVLMAQISKSALVGKDSFIVVEYPLRTD---------------MLD--TCGCLVKIKDRRFGRT 293 (317)
Q Consensus 232 fDlV~~dPPy~-~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~~~---------------l~~--~~~~~~~~~~r~yG~~ 293 (317)
||+|+++..+. ..+....++.+. ++|+|||++++....... +.. ...||.+++...++..
T Consensus 107 fD~v~~~~~l~~~~~~~~~l~~~~--~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~ 184 (219)
T 3dh0_A 107 VDFIFMAFTFHELSEPLKFLEELK--RVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILEDAGIRVGRVVEVGKY 184 (219)
T ss_dssp EEEEEEESCGGGCSSHHHHHHHHH--HHEEEEEEEEEEEECSSCCSSSCCGGGSCCHHHHHHHHHHTTCEEEEEEEETTT
T ss_pred eeEEEeehhhhhcCCHHHHHHHHH--HHhCCCeEEEEEEecccccccCCchhcccCHHHHHHHHHHCCCEEEEEEeeCCc
Confidence 99999875532 235566777665 489999999987532211 000 1367888777666654
Q ss_pred EEEE
Q 021116 294 HLAI 297 (317)
Q Consensus 294 ~l~~ 297 (317)
...+
T Consensus 185 ~~~~ 188 (219)
T 3dh0_A 185 CFGV 188 (219)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 4333
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.40 E-value=5.9e-13 Score=122.21 Aligned_cols=124 Identities=8% Similarity=0.009 Sum_probs=90.8
Q ss_pred CCCCeEEEECCCcchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF 232 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~f 232 (317)
.++.+|||+|||+|.+++.++..| +.+|+++|+|+.++ +.|++|++.+|+.++++++.+|+.+.+.. ..+|
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al-~~A~~N~~~~gl~~~I~v~~gD~l~~~~~-------~~~~ 91 (244)
T 3gnl_A 20 TKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPF-QSAQKQVRSSGLTEQIDVRKGNGLAVIEK-------KDAI 91 (244)
T ss_dssp CSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHH-HHHHHHHHHTTCTTTEEEEECSGGGGCCG-------GGCC
T ss_pred CCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHHHHcCCCceEEEEecchhhccCc-------cccc
Confidence 357899999999999999998887 45899999999999 99999999999998999999998875421 1359
Q ss_pred cEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCCCCCc-cc--cCCCeEEEEEe
Q 021116 233 DYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDM-LD--TCGCLVKIKDR 288 (317)
Q Consensus 233 DlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~~~l-~~--~~~~~~~~~~r 288 (317)
|+|++.-. +...+.++++.. ...|++++++++.-...... .. ...||.+.++.
T Consensus 92 D~Iviagm-Gg~lI~~IL~~~--~~~L~~~~~lIlq~~~~~~~lr~~L~~~Gf~i~~E~ 147 (244)
T 3gnl_A 92 DTIVIAGM-GGTLIRTILEEG--AAKLAGVTKLILQPNIAAWQLREWSEQNNWLITSEA 147 (244)
T ss_dssp CEEEEEEE-CHHHHHHHHHHT--GGGGTTCCEEEEEESSCHHHHHHHHHHHTEEEEEEE
T ss_pred cEEEEeCC-chHHHHHHHHHH--HHHhCCCCEEEEEcCCChHHHHHHHHHCCCEEEEEE
Confidence 99886310 111234444443 35789999999987644321 11 13567776554
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.3e-12 Score=114.19 Aligned_cols=113 Identities=14% Similarity=0.040 Sum_probs=87.4
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEec
Q 021116 135 VVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVR 214 (317)
Q Consensus 135 ~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD 214 (317)
.+...+...+.. .++.+|||+|||+|.+++.++..+ .+|+++|+++.++ +.|++|++.+++. +++++.+|
T Consensus 64 ~~~~~~~~~l~~-------~~~~~vLdiG~G~G~~~~~la~~~-~~v~~vD~~~~~~-~~a~~~~~~~~~~-~v~~~~~d 133 (210)
T 3lbf_A 64 YMVARMTELLEL-------TPQSRVLEIGTGSGYQTAILAHLV-QHVCSVERIKGLQ-WQARRRLKNLDLH-NVSTRHGD 133 (210)
T ss_dssp HHHHHHHHHTTC-------CTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHH-HHHHHHHHHTTCC-SEEEEESC
T ss_pred HHHHHHHHhcCC-------CCCCEEEEEcCCCCHHHHHHHHhC-CEEEEEecCHHHH-HHHHHHHHHcCCC-ceEEEECC
Confidence 344455555543 468899999999999999888875 5899999999999 9999999999986 59999999
Q ss_pred HHHHHHHHhhhcCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCC
Q 021116 215 VETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPL 271 (317)
Q Consensus 215 ~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~ 271 (317)
+.+... ..++||+|+++.....-. + .+. +.|+|||++++..+.
T Consensus 134 ~~~~~~-------~~~~~D~i~~~~~~~~~~-~----~~~--~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 134 GWQGWQ-------ARAPFDAIIVTAAPPEIP-T----ALM--TQLDEGGILVLPVGE 176 (210)
T ss_dssp GGGCCG-------GGCCEEEEEESSBCSSCC-T----HHH--HTEEEEEEEEEEECS
T ss_pred cccCCc-------cCCCccEEEEccchhhhh-H----HHH--HhcccCcEEEEEEcC
Confidence 877432 136899999986543211 1 222 379999999999886
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.39 E-value=2.8e-12 Score=112.56 Aligned_cols=104 Identities=13% Similarity=0.163 Sum_probs=82.7
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccE
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDl 234 (317)
.+.+|||+|||+|.++..++..+. +|+++|+++.++ +.|++|++.++ .+++++++|+.+.. ...++||+
T Consensus 38 ~~~~vLDlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~-~~a~~~~~~~~--~~~~~~~~d~~~~~-------~~~~~~D~ 106 (227)
T 1ve3_A 38 KRGKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMI-RKAREYAKSRE--SNVEFIVGDARKLS-------FEDKTFDY 106 (227)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHHHHTT--CCCEEEECCTTSCC-------SCTTCEEE
T ss_pred CCCeEEEEeccCCHHHHHHHHcCC-EEEEEECCHHHH-HHHHHHHHhcC--CCceEEECchhcCC-------CCCCcEEE
Confidence 478999999999999998888876 899999999999 99999998877 45899999987631 12468999
Q ss_pred EEECCC--CCC-ccHHHHHHHHHHcCCcCCCeEEEEEeCC
Q 021116 235 MSVTPP--YTA-VDYEVLMAQISKSALVGKDSFIVVEYPL 271 (317)
Q Consensus 235 V~~dPP--y~~-~~~~~~l~~L~~~~lLkpgG~ivv~~~~ 271 (317)
|+++++ +.. .+....++.+. ++|+|||++++....
T Consensus 107 v~~~~~~~~~~~~~~~~~l~~~~--~~L~~gG~l~~~~~~ 144 (227)
T 1ve3_A 107 VIFIDSIVHFEPLELNQVFKEVR--RVLKPSGKFIMYFTD 144 (227)
T ss_dssp EEEESCGGGCCHHHHHHHHHHHH--HHEEEEEEEEEEEEC
T ss_pred EEEcCchHhCCHHHHHHHHHHHH--HHcCCCcEEEEEecC
Confidence 999988 432 13345555554 589999999887653
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.39 E-value=2.7e-12 Score=125.86 Aligned_cols=132 Identities=17% Similarity=0.091 Sum_probs=91.0
Q ss_pred CCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHh--CCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 156 PGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWT--GFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 156 ~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~--gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
+.+|||+|||+|..++.++..+ .+|++||+|+.++ +.|++|++.+ |+ ++++++++|+.+++.... ..+||
T Consensus 94 g~~VLDLgcG~G~~al~LA~~g-~~V~~VD~s~~~l-~~Ar~N~~~~~~gl-~~i~~i~~Da~~~L~~~~-----~~~fD 165 (410)
T 3ll7_A 94 GTKVVDLTGGLGIDFIALMSKA-SQGIYIERNDETA-VAARHNIPLLLNEG-KDVNILTGDFKEYLPLIK-----TFHPD 165 (410)
T ss_dssp TCEEEESSCSSSHHHHHHHTTC-SEEEEEESCHHHH-HHHHHHHHHHSCTT-CEEEEEESCGGGSHHHHH-----HHCCS
T ss_pred CCEEEEeCCCchHHHHHHHhcC-CEEEEEECCHHHH-HHHHHhHHHhccCC-CcEEEEECcHHHhhhhcc-----CCCce
Confidence 7899999999999999776665 5899999999999 9999999998 88 679999999998765421 25799
Q ss_pred EEEECCCCCCc-------------cHHHHHHHHHHcCCcCCCeEEEEEeCCCCCcc----ccCCCeEEEEEeecCce-EE
Q 021116 234 YMSVTPPYTAV-------------DYEVLMAQISKSALVGKDSFIVVEYPLRTDML----DTCGCLVKIKDRRFGRT-HL 295 (317)
Q Consensus 234 lV~~dPPy~~~-------------~~~~~l~~L~~~~lLkpgG~ivv~~~~~~~l~----~~~~~~~~~~~r~yG~~-~l 295 (317)
+|++||||... ....+.+.+ +.....+++-++..-++. ......++.-----|+. ++
T Consensus 166 vV~lDPPrr~~~~grv~~led~~P~l~~~~~~l-----~~~~~~~~vK~sP~ld~~~~~~~l~~~~ev~~vSv~ge~kE~ 240 (410)
T 3ll7_A 166 YIYVDPARRSGADKRVYAIADCEPDLIPLATEL-----LPFCSSILAKLSPMIDLWDTLQSLLHVQELHVVAAHGEVKEL 240 (410)
T ss_dssp EEEECCEEC-----CCCCGGGEESCHHHHHHHH-----GGGSSEEEEEECTTSCHHHHHHHCSSEEEEEEEEETTEEEEE
T ss_pred EEEECCCCcCCCCceEEehhhcCCCHHHHHHHH-----HhhCCcEEEEcCCCCChHHHHhhCCCCcEEEEEEeCCeEEEE
Confidence 99999998652 123333333 233455666776655554 22333333322333543 55
Q ss_pred EEEee
Q 021116 296 AIYGP 300 (317)
Q Consensus 296 ~~~~p 300 (317)
.+|..
T Consensus 241 ~l~~~ 245 (410)
T 3ll7_A 241 LVRMS 245 (410)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 55543
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=1.1e-12 Score=117.29 Aligned_cols=104 Identities=14% Similarity=0.071 Sum_probs=79.5
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccE
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDl 234 (317)
++.+|||+|||+|.++..++..+..+|+++|+++.++ +.|++|++..+ .+++++++|+.+.... ..+++||+
T Consensus 60 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l-~~a~~~~~~~~--~~v~~~~~d~~~~~~~-----~~~~~fD~ 131 (236)
T 1zx0_A 60 KGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVF-QRLRDWAPRQT--HKVIPLKGLWEDVAPT-----LPDGHFDG 131 (236)
T ss_dssp TCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHH-HHHHHHGGGCS--SEEEEEESCHHHHGGG-----SCTTCEEE
T ss_pred CCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHH-HHHHHHHHhcC--CCeEEEecCHHHhhcc-----cCCCceEE
Confidence 5789999999999999988776666899999999999 99999988776 4599999999876322 23578999
Q ss_pred EEECCCCCC--c-----cHHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 235 MSVTPPYTA--V-----DYEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 235 V~~dPPy~~--~-----~~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
|++|. |.. . ..+..++.+. ++|+|||++++..
T Consensus 132 V~~d~-~~~~~~~~~~~~~~~~l~~~~--r~LkpgG~l~~~~ 170 (236)
T 1zx0_A 132 ILYDT-YPLSEETWHTHQFNFIKNHAF--RLLKPGGVLTYCN 170 (236)
T ss_dssp EEECC-CCCBGGGTTTHHHHHHHHTHH--HHEEEEEEEEECC
T ss_pred EEECC-cccchhhhhhhhHHHHHHHHH--HhcCCCeEEEEEe
Confidence 99952 221 1 1223455444 5899999998653
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=1.6e-12 Score=121.25 Aligned_cols=106 Identities=14% Similarity=-0.016 Sum_probs=86.7
Q ss_pred CCCCeEEEECCCcchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF 232 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~-Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~f 232 (317)
.++.+|||+|||+|.+++.++.+ |+ +|+++|+++.++ +.|++|++.+|+.++++++.+|+.+. +..+++|
T Consensus 116 ~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gvD~s~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~~-------~~~~~~f 186 (312)
T 3vc1_A 116 GPDDTLVDAGCGRGGSMVMAHRRFGS-RVEGVTLSAAQA-DFGNRRARELRIDDHVRSRVCNMLDT-------PFDKGAV 186 (312)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHCC-EEEEEESCHHHH-HHHHHHHHHTTCTTTEEEEECCTTSC-------CCCTTCE
T ss_pred CCCCEEEEecCCCCHHHHHHHHHcCC-EEEEEeCCHHHH-HHHHHHHHHcCCCCceEEEECChhcC-------CCCCCCE
Confidence 45789999999999999988877 64 799999999999 99999999999987899999998753 1235789
Q ss_pred cEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 233 DYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 233 DlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
|+|++.-.+...+....++.+. ++|+|||++++...
T Consensus 187 D~V~~~~~l~~~~~~~~l~~~~--~~LkpgG~l~~~~~ 222 (312)
T 3vc1_A 187 TASWNNESTMYVDLHDLFSEHS--RFLKVGGRYVTITG 222 (312)
T ss_dssp EEEEEESCGGGSCHHHHHHHHH--HHEEEEEEEEEEEE
T ss_pred eEEEECCchhhCCHHHHHHHHH--HHcCCCcEEEEEEc
Confidence 9999865433334667777765 48999999987763
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.9e-12 Score=129.32 Aligned_cols=106 Identities=17% Similarity=0.169 Sum_probs=82.7
Q ss_pred CCCeEEEECCCcchHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCc
Q 021116 155 RPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF 232 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~--Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~f 232 (317)
++.+|||+|||+|..++.++.. +..+|+++|+++.++ +.+++|++.+|+.+ ++++++|+.++.... .+.|
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l-~~~~~n~~r~g~~n-v~~~~~D~~~~~~~~------~~~f 188 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRV-KVLHANISRCGISN-VALTHFDGRVFGAAV------PEMF 188 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHH-HHHHHHHHHHTCCS-EEEECCCSTTHHHHS------TTCE
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHH-HHHHHHHHHcCCCc-EEEEeCCHHHhhhhc------cccC
Confidence 6889999999999999987764 235899999999999 99999999999864 999999998764322 3689
Q ss_pred cEEEECCCCCC-cc----------------------HHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 233 DYMSVTPPYTA-VD----------------------YEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 233 DlV~~dPPy~~-~~----------------------~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
|.|++||||.. +. ..++++.+ .++|+|||+++.++-
T Consensus 189 D~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a--~~~LkpGG~LvysTc 247 (479)
T 2frx_A 189 DAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSA--FHALRPGGTLVYSTC 247 (479)
T ss_dssp EEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHH--HHHEEEEEEEEEEES
T ss_pred CEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHH--HHhcCCCCEEEEecc
Confidence 99999999852 11 01223322 358999999987643
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.38 E-value=3.6e-12 Score=116.76 Aligned_cols=106 Identities=14% Similarity=0.212 Sum_probs=86.6
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccE
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDl 234 (317)
++.+|||+|||+|.++..++..|. +|+++|+++.++ +.|+++++..|+.++++++++|+.+.... .+++||+
T Consensus 68 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~~~~~------~~~~fD~ 139 (285)
T 4htf_A 68 QKLRVLDAGGGEGQTAIKMAERGH-QVILCDLSAQMI-DRAKQAAEAKGVSDNMQFIHCAAQDVASH------LETPVDL 139 (285)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHHHC-CCGGGEEEEESCGGGTGGG------CSSCEEE
T ss_pred CCCEEEEeCCcchHHHHHHHHCCC-EEEEEECCHHHH-HHHHHHHHhcCCCcceEEEEcCHHHhhhh------cCCCceE
Confidence 467999999999999999888865 799999999999 99999999999877799999999875321 2578999
Q ss_pred EEECCCCC-CccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 235 MSVTPPYT-AVDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 235 V~~dPPy~-~~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
|++.-.+. ..+....++.+. ++|+|||++++...
T Consensus 140 v~~~~~l~~~~~~~~~l~~~~--~~LkpgG~l~~~~~ 174 (285)
T 4htf_A 140 ILFHAVLEWVADPRSVLQTLW--SVLRPGGVLSLMFY 174 (285)
T ss_dssp EEEESCGGGCSCHHHHHHHHH--HTEEEEEEEEEEEE
T ss_pred EEECchhhcccCHHHHHHHHH--HHcCCCeEEEEEEe
Confidence 99975542 335667777775 58999999998764
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.8e-12 Score=115.64 Aligned_cols=105 Identities=13% Similarity=0.031 Sum_probs=84.7
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
.++.+|||+|||+|.+++.+++. ..+|+++|+++.++ +.|++|++.+++.++++++.+|+.+.. .....||
T Consensus 90 ~~~~~vldiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~-~~a~~~~~~~~~~~~~~~~~~d~~~~~-------~~~~~~D 160 (248)
T 2yvl_A 90 NKEKRVLEFGTGSGALLAVLSEV-AGEVWTFEAVEEFY-KTAQKNLKKFNLGKNVKFFNVDFKDAE-------VPEGIFH 160 (248)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHH-HHHHHHHHHTTCCTTEEEECSCTTTSC-------CCTTCBS
T ss_pred CCCCEEEEeCCCccHHHHHHHHh-CCEEEEEecCHHHH-HHHHHHHHHcCCCCcEEEEEcChhhcc-------cCCCccc
Confidence 36789999999999999998887 56899999999999 999999999998677999999987642 0235799
Q ss_pred EEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCCCC
Q 021116 234 YMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRT 273 (317)
Q Consensus 234 lV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~~ 273 (317)
+|++|+|.. ...++.+. ++|+|||++++..+...
T Consensus 161 ~v~~~~~~~----~~~l~~~~--~~L~~gG~l~~~~~~~~ 194 (248)
T 2yvl_A 161 AAFVDVREP----WHYLEKVH--KSLMEGAPVGFLLPTAN 194 (248)
T ss_dssp EEEECSSCG----GGGHHHHH--HHBCTTCEEEEEESSHH
T ss_pred EEEECCcCH----HHHHHHHH--HHcCCCCEEEEEeCCHH
Confidence 999998732 23444443 37999999999988543
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=99.36 E-value=9.4e-12 Score=118.83 Aligned_cols=108 Identities=17% Similarity=0.216 Sum_probs=84.6
Q ss_pred CCCeEEEECCCcchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHhHHHh--CC-CCceEEEEecHHHHHHHHhhhcCCCC
Q 021116 155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWT--GF-LDVSSIHTVRVETFLERAEQFVGKDG 230 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~-Ga~~V~aVDin~~al~~~ar~N~~~~--gl-~~~v~ii~gD~~~~l~~~~~~~~~~~ 230 (317)
...+|||+|||+|.+++++++. +..+|++||+|+.++ +.|++|+..+ ++ .++++++.+|+.+++... ..+
T Consensus 120 ~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l-~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~-----~~~ 193 (334)
T 1xj5_A 120 NPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVV-DVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNA-----AEG 193 (334)
T ss_dssp CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHH-HHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTS-----CTT
T ss_pred CCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHH-HHHHHHHHhhccccCCCcEEEEECCHHHHHHhc-----cCC
Confidence 4689999999999999998876 356899999999999 9999998763 44 357999999999876432 136
Q ss_pred CccEEEECCCCCCc--c---HHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 231 PFDYMSVTPPYTAV--D---YEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 231 ~fDlV~~dPPy~~~--~---~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
+||+|++|++.... . ..+.++.+. ++|+|||++++...
T Consensus 194 ~fDlIi~d~~~p~~~~~~l~~~~~l~~~~--~~LkpgG~lv~~~~ 236 (334)
T 1xj5_A 194 SYDAVIVDSSDPIGPAKELFEKPFFQSVA--RALRPGGVVCTQAE 236 (334)
T ss_dssp CEEEEEECCCCTTSGGGGGGSHHHHHHHH--HHEEEEEEEEEECC
T ss_pred CccEEEECCCCccCcchhhhHHHHHHHHH--HhcCCCcEEEEecC
Confidence 89999999863221 1 356666665 48999999999743
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.36 E-value=1.8e-12 Score=114.86 Aligned_cols=125 Identities=13% Similarity=0.065 Sum_probs=87.4
Q ss_pred CCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCc
Q 021116 130 RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDV 207 (317)
Q Consensus 130 rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~-G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~ 207 (317)
+|+...+...+++.+.... ..++.+|||+|||+|.+++.+++. | ..+|+++|+++.++ +.+++|++.+ ++
T Consensus 52 ~p~~~~~~~~i~~~l~~~~----~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~-~~~~~~~~~~---~~ 123 (227)
T 1g8a_A 52 NPNRSKLGAAIMNGLKNFP----IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVL-RELVPIVEER---RN 123 (227)
T ss_dssp CTTTCHHHHHHHTTCCCCC----CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHH-HHHHHHHSSC---TT
T ss_pred CCCchhHHHHHHhhHHhcC----CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHH-HHHHHHHhcc---CC
Confidence 5555555555544443210 135789999999999999988865 4 35899999999998 9999998765 45
Q ss_pred eEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 208 SSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 208 v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
++++++|+.+.... ....++||+|++|+|.. ......+..+. ++|+|||++++..
T Consensus 124 v~~~~~d~~~~~~~----~~~~~~~D~v~~~~~~~-~~~~~~l~~~~--~~LkpgG~l~~~~ 178 (227)
T 1g8a_A 124 IVPILGDATKPEEY----RALVPKVDVIFEDVAQP-TQAKILIDNAE--VYLKRGGYGMIAV 178 (227)
T ss_dssp EEEEECCTTCGGGG----TTTCCCEEEEEECCCST-THHHHHHHHHH--HHEEEEEEEEEEE
T ss_pred CEEEEccCCCcchh----hcccCCceEEEECCCCH-hHHHHHHHHHH--HhcCCCCEEEEEE
Confidence 99999998763210 01135799999998732 22223355554 4899999998874
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.35 E-value=7.9e-12 Score=123.41 Aligned_cols=120 Identities=13% Similarity=0.063 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHc-CCCEEEEEeCCHHHHHHHH-------HHhHHHhCCC
Q 021116 134 EVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVL-------IPNLEWTGFL 205 (317)
Q Consensus 134 ~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~-Ga~~V~aVDin~~al~~~a-------r~N~~~~gl~ 205 (317)
..+...+++.+.. .++.+|||+|||+|.+++.++.. |+.+|++||+++.++ +.| ++|++.+|+.
T Consensus 228 p~~v~~ml~~l~l-------~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l-~~A~~Ml~~ar~~~~~~Gl~ 299 (433)
T 1u2z_A 228 PNFLSDVYQQCQL-------KKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDAS-DLTILQYEELKKRCKLYGMR 299 (433)
T ss_dssp HHHHHHHHHHTTC-------CTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHH-HHHHHHHHHHHHHHHHTTBC
T ss_pred HHHHHHHHHhcCC-------CCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHH-HHHHHhHHHHHHHHHHcCCC
Confidence 4445555555533 46789999999999999988874 667899999999998 999 9999999953
Q ss_pred -CceEEEEecHH-H-H-HHHHhhhcCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 206 -DVSSIHTVRVE-T-F-LERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 206 -~~v~ii~gD~~-~-~-l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
++++++++|.. . + +... ..+||+|+++...........+..+. +.|+|||++++..
T Consensus 300 ~~nV~~i~gD~~~~~~~~~~~------~~~FDvIvvn~~l~~~d~~~~L~el~--r~LKpGG~lVi~d 359 (433)
T 1u2z_A 300 LNNVEFSLKKSFVDNNRVAEL------IPQCDVILVNNFLFDEDLNKKVEKIL--QTAKVGCKIISLK 359 (433)
T ss_dssp CCCEEEEESSCSTTCHHHHHH------GGGCSEEEECCTTCCHHHHHHHHHHH--TTCCTTCEEEESS
T ss_pred CCceEEEEcCccccccccccc------cCCCCEEEEeCccccccHHHHHHHHH--HhCCCCeEEEEee
Confidence 56999987543 2 1 1111 25799999975432234555555554 6899999999874
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.35 E-value=5.6e-12 Score=113.79 Aligned_cols=104 Identities=13% Similarity=0.049 Sum_probs=83.6
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
.++.+|||+|||+|.++..++.++. +|+++|+++.++ +.|+++++..++. +++++.+|+.++ +..+++||
T Consensus 36 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l-~~a~~~~~~~~~~-~v~~~~~d~~~l-------~~~~~~fD 105 (260)
T 1vl5_A 36 KGNEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDIL-KVARAFIEGNGHQ-QVEYVQGDAEQM-------PFTDERFH 105 (260)
T ss_dssp CSCCEEEEETCTTCHHHHHHGGGSS-EEEEEESCHHHH-HHHHHHHHHTTCC-SEEEEECCC-CC-------CSCTTCEE
T ss_pred CCCCEEEEEeCCCCHHHHHHHHhCC-EEEEEeCCHHHH-HHHHHHHHhcCCC-ceEEEEecHHhC-------CCCCCCEE
Confidence 3678999999999999998888775 899999999999 9999999988875 599999998763 22357899
Q ss_pred EEEECCCC-CCccHHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 234 YMSVTPPY-TAVDYEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 234 lV~~dPPy-~~~~~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
+|++.-.. +..+....+..+. ++|+|||++++..
T Consensus 106 ~V~~~~~l~~~~d~~~~l~~~~--r~LkpgG~l~~~~ 140 (260)
T 1vl5_A 106 IVTCRIAAHHFPNPASFVSEAY--RVLKKGGQLLLVD 140 (260)
T ss_dssp EEEEESCGGGCSCHHHHHHHHH--HHEEEEEEEEEEE
T ss_pred EEEEhhhhHhcCCHHHHHHHHH--HHcCCCCEEEEEE
Confidence 99987432 2345667777765 4899999999863
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.35 E-value=1.6e-12 Score=123.60 Aligned_cols=103 Identities=13% Similarity=0.071 Sum_probs=80.1
Q ss_pred CCCeEEEECCCcchHHHHHHHcCC------CEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCC
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGC------SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga------~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~ 228 (317)
.+.+|||+|||||.+.+.++.... .+++|+|+|+.++ +.|+.|+...|+ ++.++++|+.... .
T Consensus 130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~-~~a~~n~~~~g~--~~~i~~~D~l~~~--------~ 198 (344)
T 2f8l_A 130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLI-SLALVGADLQRQ--KMTLLHQDGLANL--------L 198 (344)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHH-HHHHHHHHHHTC--CCEEEESCTTSCC--------C
T ss_pred CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHH-HHHHHHHHhCCC--CceEEECCCCCcc--------c
Confidence 567999999999999998876531 4799999999999 999999998887 3789999976531 2
Q ss_pred CCCccEEEECCCCCCcc------------------H-HHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 229 DGPFDYMSVTPPYTAVD------------------Y-EVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 229 ~~~fDlV~~dPPy~~~~------------------~-~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
.+.||+|++||||+... + ...++.+. +.|+|||++++..+
T Consensus 199 ~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~--~~Lk~gG~~~~v~p 257 (344)
T 2f8l_A 199 VDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGM--RYTKPGGYLFFLVP 257 (344)
T ss_dssp CCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHH--HTEEEEEEEEEEEE
T ss_pred cCCccEEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHH--HHhCCCCEEEEEEC
Confidence 36899999999975321 1 12344433 48999999988874
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=5.7e-12 Score=118.85 Aligned_cols=107 Identities=16% Similarity=0.180 Sum_probs=85.5
Q ss_pred CCCeEEEECCCcchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHhHHHh--C-C-CCceEEEEecHHHHHHHHhhhcCCC
Q 021116 155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWT--G-F-LDVSSIHTVRVETFLERAEQFVGKD 229 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~-Ga~~V~aVDin~~al~~~ar~N~~~~--g-l-~~~v~ii~gD~~~~l~~~~~~~~~~ 229 (317)
.+.+|||+|||+|.++.++++. +..+|++||+|+.++ +.|++|+... + + .++++++.+|+.+++... .
T Consensus 77 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i-~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~------~ 149 (314)
T 1uir_A 77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELV-EVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERT------E 149 (314)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHH-HHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHC------C
T ss_pred CCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHH-HHHHHHhHhhccccccCCceEEEEchHHHHHHhc------C
Confidence 4689999999999999998876 456899999999999 9999998652 2 2 357999999999886542 4
Q ss_pred CCccEEEECCCCCC---cc-----HHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 230 GPFDYMSVTPPYTA---VD-----YEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 230 ~~fDlV~~dPPy~~---~~-----~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
++||+|++|++... +. ..+.++.+. ++|+|||++++...
T Consensus 150 ~~fD~Ii~d~~~~~~~~~~~~~l~~~~~l~~~~--~~LkpgG~lv~~~~ 196 (314)
T 1uir_A 150 ERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVK--AHLNPGGVMGMQTG 196 (314)
T ss_dssp CCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHH--HTEEEEEEEEEEEE
T ss_pred CCccEEEECCCCcccccCcchhccHHHHHHHHH--HhcCCCcEEEEEcc
Confidence 78999999987643 21 356666665 48999999998753
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.34 E-value=8e-12 Score=112.10 Aligned_cols=104 Identities=15% Similarity=0.124 Sum_probs=83.3
Q ss_pred CCCCeEEEECCCcchHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHhHHHh-CCCCceEEEEecHHHHHHHHhhhcCCCC
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWT-GFLDVSSIHTVRVETFLERAEQFVGKDG 230 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~-G-a~~V~aVDin~~al~~~ar~N~~~~-gl~~~v~ii~gD~~~~l~~~~~~~~~~~ 230 (317)
.++.+|||+|||+|.+++.++.. | ..+|+++|+++.++ +.|++|++.+ | .++++++.+|+.+.. ...+
T Consensus 95 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~-~~a~~~~~~~~g-~~~v~~~~~d~~~~~-------~~~~ 165 (258)
T 2pwy_A 95 APGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHL-AQAERNVRAFWQ-VENVRFHLGKLEEAE-------LEEA 165 (258)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHH-HHHHHHHHHHCC-CCCEEEEESCGGGCC-------CCTT
T ss_pred CCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHH-HHHHHHHHHhcC-CCCEEEEECchhhcC-------CCCC
Confidence 46789999999999999988876 4 45899999999999 9999999988 8 456999999987651 1236
Q ss_pred CccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCCC
Q 021116 231 PFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 231 ~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~ 272 (317)
.||+|++|+|.. ...++.+. ++|+|||++++..+..
T Consensus 166 ~~D~v~~~~~~~----~~~l~~~~--~~L~~gG~l~~~~~~~ 201 (258)
T 2pwy_A 166 AYDGVALDLMEP----WKVLEKAA--LALKPDRFLVAYLPNI 201 (258)
T ss_dssp CEEEEEEESSCG----GGGHHHHH--HHEEEEEEEEEEESCH
T ss_pred CcCEEEECCcCH----HHHHHHHH--HhCCCCCEEEEEeCCH
Confidence 799999998743 23444443 3689999999988755
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=1.1e-11 Score=113.48 Aligned_cols=125 Identities=17% Similarity=0.138 Sum_probs=91.9
Q ss_pred ChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCC---Cce
Q 021116 132 MMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFL---DVS 208 (317)
Q Consensus 132 t~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~---~~v 208 (317)
....+++.+.+.+.. .++.+|||+|||+|.+++.++..|+ +|+++|+++.++ +.|++|+...+.. .++
T Consensus 41 ~~~~~~~~l~~~l~~-------~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l-~~a~~~~~~~~~~~~~~~~ 111 (293)
T 3thr_A 41 RTAEYKAWLLGLLRQ-------HGCHRVLDVACGTGVDSIMLVEEGF-SVTSVDASDKML-KYALKERWNRRKEPAFDKW 111 (293)
T ss_dssp BCHHHHHHHHHHHHH-------TTCCEEEETTCTTSHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHHHHTTTSHHHHTC
T ss_pred hHHHHHHHHHHHhcc-------cCCCEEEEecCCCCHHHHHHHHCCC-eEEEEECCHHHH-HHHHHhhhhccccccccee
Confidence 345566677777665 3578999999999999999988877 899999999999 9999987543322 247
Q ss_pred EEEEecHHHHHHHHhhhcCCCCCccEEEEC-CCC-CCcc-------HHHHHHHHHHcCCcCCCeEEEEEeCC
Q 021116 209 SIHTVRVETFLERAEQFVGKDGPFDYMSVT-PPY-TAVD-------YEVLMAQISKSALVGKDSFIVVEYPL 271 (317)
Q Consensus 209 ~ii~gD~~~~l~~~~~~~~~~~~fDlV~~d-PPy-~~~~-------~~~~l~~L~~~~lLkpgG~ivv~~~~ 271 (317)
.+..+|+.+..... ...++||+|++. ..+ +..+ ...+++.+. ++|+|||++++..+.
T Consensus 112 ~~~~~d~~~~~~~~----~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~--~~LkpgG~l~~~~~~ 177 (293)
T 3thr_A 112 VIEEANWLTLDKDV----PAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIA--SMVRPGGLLVIDHRN 177 (293)
T ss_dssp EEEECCGGGHHHHS----CCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHH--HTEEEEEEEEEEEEC
T ss_pred eEeecChhhCcccc----ccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHH--HHcCCCeEEEEEeCC
Confidence 88999987754221 134789999996 332 2223 556666665 589999999988753
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=6.6e-12 Score=116.92 Aligned_cols=105 Identities=14% Similarity=0.107 Sum_probs=86.0
Q ss_pred CCCCeEEEECCCcchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF 232 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~-Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~f 232 (317)
.++.+|||+|||+|.+++.++.. |+ +|+++|+++.++ +.++++++..|+.++++++.+|+.++ .++|
T Consensus 89 ~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gvD~s~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~~----------~~~f 156 (318)
T 2fk8_A 89 KPGMTLLDIGCGWGTTMRRAVERFDV-NVIGLTLSKNQH-ARCEQVLASIDTNRSRQVLLQGWEDF----------AEPV 156 (318)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHCC-EEEEEESCHHHH-HHHHHHHHTSCCSSCEEEEESCGGGC----------CCCC
T ss_pred CCcCEEEEEcccchHHHHHHHHHCCC-EEEEEECCHHHH-HHHHHHHHhcCCCCceEEEECChHHC----------CCCc
Confidence 35789999999999999988876 66 799999999999 99999999989887899999998653 2689
Q ss_pred cEEEECCCCCC---ccHHHHHHHHHHcCCcCCCeEEEEEeCCC
Q 021116 233 DYMSVTPPYTA---VDYEVLMAQISKSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 233 DlV~~dPPy~~---~~~~~~l~~L~~~~lLkpgG~ivv~~~~~ 272 (317)
|+|++...+.. .+....++.+. ++|+|||++++.....
T Consensus 157 D~v~~~~~l~~~~~~~~~~~l~~~~--~~LkpgG~l~~~~~~~ 197 (318)
T 2fk8_A 157 DRIVSIEAFEHFGHENYDDFFKRCF--NIMPADGRMTVQSSVS 197 (318)
T ss_dssp SEEEEESCGGGTCGGGHHHHHHHHH--HHSCTTCEEEEEEEEC
T ss_pred CEEEEeChHHhcCHHHHHHHHHHHH--HhcCCCcEEEEEEecc
Confidence 99998754422 24566777665 4899999999876543
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.33 E-value=8.7e-12 Score=114.68 Aligned_cols=106 Identities=13% Similarity=0.192 Sum_probs=86.5
Q ss_pred CCCCeEEEECCCcchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF 232 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~-Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~f 232 (317)
.++.+|||+|||+|.++..++.. |+ +|+++|+++.++ +.|+++++..|+.++++++.+|+.+. +..+++|
T Consensus 81 ~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvD~s~~~~-~~a~~~~~~~~~~~~~~~~~~d~~~~-------~~~~~~f 151 (297)
T 2o57_A 81 QRQAKGLDLGAGYGGAARFLVRKFGV-SIDCLNIAPVQN-KRNEEYNNQAGLADNITVKYGSFLEI-------PCEDNSY 151 (297)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHH-HHHHHHHHHHTCTTTEEEEECCTTSC-------SSCTTCE
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCC-EEEEEeCCHHHH-HHHHHHHHhcCCCcceEEEEcCcccC-------CCCCCCE
Confidence 36789999999999999988776 65 799999999999 99999999999887899999998763 2235789
Q ss_pred cEEEECCC-CCCccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 233 DYMSVTPP-YTAVDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 233 DlV~~dPP-y~~~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
|+|++.-. ++..+....++.+. ++|+|||++++...
T Consensus 152 D~v~~~~~l~~~~~~~~~l~~~~--~~LkpgG~l~~~~~ 188 (297)
T 2o57_A 152 DFIWSQDAFLHSPDKLKVFQECA--RVLKPRGVMAITDP 188 (297)
T ss_dssp EEEEEESCGGGCSCHHHHHHHHH--HHEEEEEEEEEEEE
T ss_pred eEEEecchhhhcCCHHHHHHHHH--HHcCCCeEEEEEEe
Confidence 99998643 33445677777775 48999999998754
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=99.33 E-value=6.3e-13 Score=122.87 Aligned_cols=80 Identities=20% Similarity=0.235 Sum_probs=66.0
Q ss_pred CeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHh-------C-CCCceEEEEecHHHHHHHHhhhcCC
Q 021116 157 GRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWT-------G-FLDVSSIHTVRVETFLERAEQFVGK 228 (317)
Q Consensus 157 ~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~-------g-l~~~v~ii~gD~~~~l~~~~~~~~~ 228 (317)
.+|||+|||+|..+++++++|+ +|++||+++.++ +++++|++.. + +.++++++++|+.+++...
T Consensus 90 ~~VLDl~~G~G~dal~lA~~g~-~V~~vE~~~~~~-~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~~------ 161 (258)
T 2oyr_A 90 PDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVA-ALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDI------ 161 (258)
T ss_dssp CCEEETTCTTCHHHHHHHHHTC-CEEEEECCHHHH-HHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTC------
T ss_pred CEEEEcCCcCCHHHHHHHHcCC-EEEEEECCHHHH-HHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHhC------
Confidence 7999999999999999999987 599999999886 7777776543 3 4356999999999886433
Q ss_pred CCCccEEEECCCCCCc
Q 021116 229 DGPFDYMSVTPPYTAV 244 (317)
Q Consensus 229 ~~~fDlV~~dPPy~~~ 244 (317)
.+.||+|++||||...
T Consensus 162 ~~~fDvV~lDP~y~~~ 177 (258)
T 2oyr_A 162 TPRPQVVYLDPMFPHK 177 (258)
T ss_dssp SSCCSEEEECCCCCCC
T ss_pred cccCCEEEEcCCCCCc
Confidence 2469999999999653
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=7.8e-12 Score=111.95 Aligned_cols=105 Identities=15% Similarity=0.099 Sum_probs=85.0
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
.++.+|||+|||+|.++..++..+. +|+++|+++.++ +.++++++.+++. +++++.+|+.+. +..+++||
T Consensus 20 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~-~~a~~~~~~~~~~-~v~~~~~d~~~~-------~~~~~~fD 89 (239)
T 1xxl_A 20 RAEHRVLDIGAGAGHTALAFSPYVQ-ECIGVDATKEMV-EVASSFAQEKGVE-NVRFQQGTAESL-------PFPDDSFD 89 (239)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHH-HHHHHHHHHHTCC-SEEEEECBTTBC-------CSCTTCEE
T ss_pred CCCCEEEEEccCcCHHHHHHHHhCC-EEEEEECCHHHH-HHHHHHHHHcCCC-CeEEEecccccC-------CCCCCcEE
Confidence 4688999999999999998888775 899999999999 9999999998885 599999998653 22357899
Q ss_pred EEEECCCC-CCccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 234 YMSVTPPY-TAVDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 234 lV~~dPPy-~~~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
+|++.-.. +..+....+..+. ++|+|||++++...
T Consensus 90 ~v~~~~~l~~~~~~~~~l~~~~--~~LkpgG~l~~~~~ 125 (239)
T 1xxl_A 90 IITCRYAAHHFSDVRKAVREVA--RVLKQDGRFLLVDH 125 (239)
T ss_dssp EEEEESCGGGCSCHHHHHHHHH--HHEEEEEEEEEEEE
T ss_pred EEEECCchhhccCHHHHHHHHH--HHcCCCcEEEEEEc
Confidence 99987432 3345667777765 48999999988643
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.32 E-value=4e-12 Score=120.35 Aligned_cols=107 Identities=18% Similarity=0.217 Sum_probs=82.2
Q ss_pred CCCeEEEECCCcchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHhHHHh--CC-CCceEEEEecHHHHHHHHhhhcCCCC
Q 021116 155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWT--GF-LDVSSIHTVRVETFLERAEQFVGKDG 230 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~-Ga~~V~aVDin~~al~~~ar~N~~~~--gl-~~~v~ii~gD~~~~l~~~~~~~~~~~ 230 (317)
.+.+|||+|||+|.++.++++. +..+|++||+|+.++ +.|++|+..+ ++ .++++++.+|+.+++... .+
T Consensus 108 ~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i-~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~------~~ 180 (314)
T 2b2c_A 108 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVI-DVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNH------KN 180 (314)
T ss_dssp SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHH-HHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHC------TT
T ss_pred CCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHH-HHHHHHHHHhccccCCCCEEEEEChHHHHHHhc------CC
Confidence 4689999999999999998876 356899999999999 9999998754 44 457999999999887542 46
Q ss_pred CccEEEECCCCCCc----cH-HHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 231 PFDYMSVTPPYTAV----DY-EVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 231 ~fDlV~~dPPy~~~----~~-~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
+||+|++|++.... .+ .+.++.+. ++|+|||++++...
T Consensus 181 ~fD~Ii~d~~~~~~~~~~l~t~~~l~~~~--~~LkpgG~lv~~~~ 223 (314)
T 2b2c_A 181 EFDVIITDSSDPVGPAESLFGQSYYELLR--DALKEDGILSSQGE 223 (314)
T ss_dssp CEEEEEECCC-------------HHHHHH--HHEEEEEEEEEECC
T ss_pred CceEEEEcCCCCCCcchhhhHHHHHHHHH--hhcCCCeEEEEECC
Confidence 89999999863221 12 45555554 48999999999864
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.32 E-value=5.3e-12 Score=118.62 Aligned_cols=116 Identities=16% Similarity=0.056 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCC--CEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEE
Q 021116 134 EVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGC--SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH 211 (317)
Q Consensus 134 ~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga--~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii 211 (317)
..+...+.+.+.. .++.+|||+|||+|.+++.++..+. .+|+++|+++.++ +.|++|++.+|+.+ ++++
T Consensus 61 ~~~~~~l~~~l~~-------~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~-~~a~~~~~~~g~~~-v~~~ 131 (317)
T 1dl5_A 61 PSLMALFMEWVGL-------DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKIC-EIAKRNVERLGIEN-VIFV 131 (317)
T ss_dssp HHHHHHHHHHTTC-------CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHH-HHHHHHHHHTTCCS-EEEE
T ss_pred HHHHHHHHHhcCC-------CCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHH-HHHHHHHHHcCCCC-eEEE
Confidence 3445555555543 4678999999999999998887643 4699999999999 99999999999866 9999
Q ss_pred EecHHHHHHHHhhhcCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCCC
Q 021116 212 TVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 212 ~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~ 272 (317)
.+|+.+... ..++||+|+++++...-. +.+. +.|+|||++++.+...
T Consensus 132 ~~d~~~~~~-------~~~~fD~Iv~~~~~~~~~-----~~~~--~~LkpgG~lvi~~~~~ 178 (317)
T 1dl5_A 132 CGDGYYGVP-------EFSPYDVIFVTVGVDEVP-----ETWF--TQLKEGGRVIVPINLK 178 (317)
T ss_dssp ESCGGGCCG-------GGCCEEEEEECSBBSCCC-----HHHH--HHEEEEEEEEEEBCBG
T ss_pred ECChhhccc-------cCCCeEEEEEcCCHHHHH-----HHHH--HhcCCCcEEEEEECCC
Confidence 999876432 136799999998865322 2222 2689999999987654
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.32 E-value=6.1e-12 Score=112.21 Aligned_cols=106 Identities=10% Similarity=-0.042 Sum_probs=79.7
Q ss_pred CCCeEEEECCCcchHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCc
Q 021116 155 RPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF 232 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~-G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~f 232 (317)
++.+|||+|||+|.+++.+++. | ..+|+++|+++.++ +.+.+|++.+ ++++++.+|+.+... ++...++|
T Consensus 77 ~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i-~~~~~~a~~~---~~v~~~~~d~~~~~~----~~~~~~~~ 148 (233)
T 2ipx_A 77 PGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSG-RDLINLAKKR---TNIIPVIEDARHPHK----YRMLIAMV 148 (233)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHH-HHHHHHHHHC---TTEEEECSCTTCGGG----GGGGCCCE
T ss_pred CCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHH-HHHHHHhhcc---CCeEEEEcccCChhh----hcccCCcE
Confidence 5789999999999999988775 3 35899999999998 8888888775 458999999876321 01124689
Q ss_pred cEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCC
Q 021116 233 DYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPL 271 (317)
Q Consensus 233 DlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~ 271 (317)
|+|++|+|. ......++..+. ++|+|||++++++..
T Consensus 149 D~V~~~~~~-~~~~~~~~~~~~--~~LkpgG~l~i~~~~ 184 (233)
T 2ipx_A 149 DVIFADVAQ-PDQTRIVALNAH--TFLRNGGHFVISIKA 184 (233)
T ss_dssp EEEEECCCC-TTHHHHHHHHHH--HHEEEEEEEEEEEEH
T ss_pred EEEEEcCCC-ccHHHHHHHHHH--HHcCCCeEEEEEEcc
Confidence 999999982 222333344443 489999999998764
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=5.2e-12 Score=115.31 Aligned_cols=109 Identities=15% Similarity=0.056 Sum_probs=85.8
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcC-CCCCc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG-KDGPF 232 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~-~~~~f 232 (317)
.++.+|||+|||+|.++..++..|..+|+++|+++.++ +.|++++...+..++++++++|+.+.. . ..++|
T Consensus 63 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~~~-------~~~~~~f 134 (298)
T 1ri5_A 63 KRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSI-NDARVRARNMKRRFKVFFRAQDSYGRH-------MDLGKEF 134 (298)
T ss_dssp CTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHH-HHHHHHHHTSCCSSEEEEEESCTTTSC-------CCCSSCE
T ss_pred CCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHH-HHHHHHHHhcCCCccEEEEECCccccc-------cCCCCCc
Confidence 35789999999999999988877776899999999999 999999998887677999999987641 1 24689
Q ss_pred cEEEECCCCCC--c---cHHHHHHHHHHcCCcCCCeEEEEEeCCC
Q 021116 233 DYMSVTPPYTA--V---DYEVLMAQISKSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 233 DlV~~dPPy~~--~---~~~~~l~~L~~~~lLkpgG~ivv~~~~~ 272 (317)
|+|+++-..+. . +....++.+. ++|+|||++++..+..
T Consensus 135 D~v~~~~~l~~~~~~~~~~~~~l~~~~--~~LkpgG~l~~~~~~~ 177 (298)
T 1ri5_A 135 DVISSQFSFHYAFSTSESLDIAQRNIA--RHLRPGGYFIMTVPSR 177 (298)
T ss_dssp EEEEEESCGGGGGSSHHHHHHHHHHHH--HTEEEEEEEEEEEECH
T ss_pred CEEEECchhhhhcCCHHHHHHHHHHHH--HhcCCCCEEEEEECCH
Confidence 99998754322 1 2344555554 5899999999887643
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.32 E-value=3.5e-12 Score=112.20 Aligned_cols=101 Identities=14% Similarity=-0.039 Sum_probs=73.4
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhC-----------CCCceEEEEecHHHHHHHHh
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTG-----------FLDVSSIHTVRVETFLERAE 223 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~g-----------l~~~v~ii~gD~~~~l~~~~ 223 (317)
++.+|||+|||+|..+..++++|. +|++||+++.|+ +.|+++.+... ...+++++++|+.+.....
T Consensus 22 ~~~~vLD~GCG~G~~~~~la~~g~-~V~gvD~S~~~l-~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~- 98 (203)
T 1pjz_A 22 PGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAV-ERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARD- 98 (203)
T ss_dssp TTCEEEETTTCCSHHHHHHHHHCC-EEEEEEECHHHH-HHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHH-
T ss_pred CCCEEEEeCCCCcHhHHHHHHCCC-eEEEEeCCHHHH-HHHHHHccCCcccccccccccccCCccEEEECccccCCccc-
Confidence 578999999999999999888886 799999999999 99988764310 0245899999987753210
Q ss_pred hhcCCCCCccEEEECCCCCCc---cHHHHHHHHHHcCCcCCCeEE
Q 021116 224 QFVGKDGPFDYMSVTPPYTAV---DYEVLMAQISKSALVGKDSFI 265 (317)
Q Consensus 224 ~~~~~~~~fDlV~~dPPy~~~---~~~~~l~~L~~~~lLkpgG~i 265 (317)
.++||+|+..-.+..- .....++.+. ++|+|||++
T Consensus 99 -----~~~fD~v~~~~~l~~l~~~~~~~~l~~~~--r~LkpgG~~ 136 (203)
T 1pjz_A 99 -----IGHCAAFYDRAAMIALPADMRERYVQHLE--ALMPQACSG 136 (203)
T ss_dssp -----HHSEEEEEEESCGGGSCHHHHHHHHHHHH--HHSCSEEEE
T ss_pred -----CCCEEEEEECcchhhCCHHHHHHHHHHHH--HHcCCCcEE
Confidence 1579999975443221 1233455554 589999983
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=1.1e-11 Score=113.51 Aligned_cols=103 Identities=16% Similarity=0.162 Sum_probs=83.8
Q ss_pred CCCCeEEEECCCcchHHHHHH-HcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAI-SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF 232 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaa-s~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~f 232 (317)
.++.+|||+|||+|.+++.++ ..|+ +|+++|+++.++ +.++++++..++.++++++.+|+.++ .++|
T Consensus 63 ~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvd~s~~~~-~~a~~~~~~~~~~~~~~~~~~d~~~~----------~~~f 130 (287)
T 1kpg_A 63 QPGMTLLDVGCGWGATMMRAVEKYDV-NVVGLTLSKNQA-NHVQQLVANSENLRSKRVLLAGWEQF----------DEPV 130 (287)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHH-HHHHHHHHTCCCCSCEEEEESCGGGC----------CCCC
T ss_pred CCcCEEEEECCcccHHHHHHHHHcCC-EEEEEECCHHHH-HHHHHHHHhcCCCCCeEEEECChhhC----------CCCe
Confidence 357899999999999999887 4565 899999999999 99999999888877899999998653 2689
Q ss_pred cEEEECCCCC-C--ccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 233 DYMSVTPPYT-A--VDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 233 DlV~~dPPy~-~--~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
|+|++.-.+. . .+....++.+. ++|+|||++++...
T Consensus 131 D~v~~~~~l~~~~~~~~~~~l~~~~--~~LkpgG~l~~~~~ 169 (287)
T 1kpg_A 131 DRIVSIGAFEHFGHERYDAFFSLAH--RLLPADGVMLLHTI 169 (287)
T ss_dssp SEEEEESCGGGTCTTTHHHHHHHHH--HHSCTTCEEEEEEE
T ss_pred eEEEEeCchhhcChHHHHHHHHHHH--HhcCCCCEEEEEEe
Confidence 9999864432 1 24566777765 48999999998764
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.3e-11 Score=108.19 Aligned_cols=114 Identities=12% Similarity=0.046 Sum_probs=86.6
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCC--CEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEe
Q 021116 136 VKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGC--SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTV 213 (317)
Q Consensus 136 v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga--~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~g 213 (317)
+...+...+.. .++.+|||+|||+|.+++.++..+. .+|+++|+++.++ +.+++|++.+++.+ ++++.+
T Consensus 65 ~~~~~~~~~~~-------~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~-~~a~~~~~~~~~~~-v~~~~~ 135 (215)
T 2yxe_A 65 MVGMMCELLDL-------KPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELA-EKAERTLRKLGYDN-VIVIVG 135 (215)
T ss_dssp HHHHHHHHTTC-------CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHH-HHHHHHHHHHTCTT-EEEEES
T ss_pred HHHHHHHhhCC-------CCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHH-HHHHHHHHHcCCCC-eEEEEC
Confidence 44455555532 4678999999999999998877652 5899999999999 99999999998865 999999
Q ss_pred cHHHHHHHHhhhcCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCCC
Q 021116 214 RVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 214 D~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~ 272 (317)
|+..... ..++||+|+++.++.... +.+. ++|+|||++++..+..
T Consensus 136 d~~~~~~-------~~~~fD~v~~~~~~~~~~-----~~~~--~~L~pgG~lv~~~~~~ 180 (215)
T 2yxe_A 136 DGTLGYE-------PLAPYDRIYTTAAGPKIP-----EPLI--RQLKDGGKLLMPVGRY 180 (215)
T ss_dssp CGGGCCG-------GGCCEEEEEESSBBSSCC-----HHHH--HTEEEEEEEEEEESSS
T ss_pred CcccCCC-------CCCCeeEEEECCchHHHH-----HHHH--HHcCCCcEEEEEECCC
Confidence 9854321 136799999997654311 2332 3799999999988754
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.31 E-value=6.1e-12 Score=113.59 Aligned_cols=109 Identities=14% Similarity=0.070 Sum_probs=82.2
Q ss_pred CCCeEEEECCCcchHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHhHHHh--------CCCCceEEEEecHHHHHHHHhhh
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGC-SEVHFVEMDPWVVSNVLIPNLEWT--------GFLDVSSIHTVRVETFLERAEQF 225 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga-~~V~aVDin~~al~~~ar~N~~~~--------gl~~~v~ii~gD~~~~l~~~~~~ 225 (317)
++.+|||+|||+|.+++.++..+. .+|++||+++.++ +.|++|++.+ ++. +++++++|+.+++...
T Consensus 49 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l-~~a~~~~~~~~~~~~~~~~~~-nv~~~~~D~~~~l~~~--- 123 (246)
T 2vdv_E 49 KKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVT-NYVEDRIIALRNNTASKHGFQ-NINVLRGNAMKFLPNF--- 123 (246)
T ss_dssp CCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHH-HHHHHHHHHHHHTC-CCSTTT-TEEEEECCTTSCGGGT---
T ss_pred CCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHH-HHHHHHHHHHhhccccccCCC-cEEEEeccHHHHHHHh---
Confidence 567999999999999999888764 4899999999999 9999999887 775 5999999998754321
Q ss_pred cCCCCCccEEEECC--CCCCc-------cHHHHHHHHHHcCCcCCCeEEEEEeCC
Q 021116 226 VGKDGPFDYMSVTP--PYTAV-------DYEVLMAQISKSALVGKDSFIVVEYPL 271 (317)
Q Consensus 226 ~~~~~~fDlV~~dP--Py~~~-------~~~~~l~~L~~~~lLkpgG~ivv~~~~ 271 (317)
.....+|.|+++- |+.+. .+..+++.+. ++|+|||++++.+..
T Consensus 124 -~~~~~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~--~~LkpgG~l~~~td~ 175 (246)
T 2vdv_E 124 -FEKGQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYA--YVLKEGGVVYTITDV 175 (246)
T ss_dssp -SCTTCEEEEEEESCCCC------CSSCCCHHHHHHHH--HHEEEEEEEEEEESC
T ss_pred -ccccccCEEEEECCCcccccchhHHhhccHHHHHHHH--HHcCCCCEEEEEecc
Confidence 1246799887642 22211 1245666665 489999999997654
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.31 E-value=2.6e-12 Score=126.51 Aligned_cols=123 Identities=18% Similarity=0.109 Sum_probs=91.9
Q ss_pred CCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHc--------------CCCEEEEEeCCHHHHHHHH
Q 021116 130 RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR--------------GCSEVHFVEMDPWVVSNVL 195 (317)
Q Consensus 130 rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~--------------Ga~~V~aVDin~~al~~~a 195 (317)
..|...+.+.+.+.+.. ..+.+|||+|||||.+.+.++.. ...+++|+|+|+.++ ++|
T Consensus 153 fyTP~~v~~~mv~~l~~-------~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~-~lA 224 (445)
T 2okc_A 153 YFTPRPLIQAMVDCINP-------QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVV-TLA 224 (445)
T ss_dssp GCCCHHHHHHHHHHHCC-------CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHH-HHH
T ss_pred ccCcHHHHHHHHHHhCC-------CCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHH-HHH
Confidence 45667778888887754 35779999999999999987653 123599999999998 999
Q ss_pred HHhHHHhCCCC-ceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCccH------------------HHHHHHHHHc
Q 021116 196 IPNLEWTGFLD-VSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDY------------------EVLMAQISKS 256 (317)
Q Consensus 196 r~N~~~~gl~~-~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~~------------------~~~l~~L~~~ 256 (317)
+.|+...|+.+ .++++++|..... ...+||+|++||||..... ...++.+.
T Consensus 225 ~~nl~l~g~~~~~~~i~~gD~l~~~--------~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~-- 294 (445)
T 2okc_A 225 SMNLYLHGIGTDRSPIVCEDSLEKE--------PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMM-- 294 (445)
T ss_dssp HHHHHHTTCCSSCCSEEECCTTTSC--------CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHH--
T ss_pred HHHHHHhCCCcCCCCEeeCCCCCCc--------ccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHH--
Confidence 99999988852 4778999976531 1248999999999974210 13344433
Q ss_pred CCcCCCeEEEEEeC
Q 021116 257 ALVGKDSFIVVEYP 270 (317)
Q Consensus 257 ~lLkpgG~ivv~~~ 270 (317)
++|++||++.+..+
T Consensus 295 ~~Lk~gG~~a~V~p 308 (445)
T 2okc_A 295 LMLKTGGRAAVVLP 308 (445)
T ss_dssp HHEEEEEEEEEEEE
T ss_pred HHhccCCEEEEEEC
Confidence 47999999876654
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=99.31 E-value=6.8e-12 Score=123.00 Aligned_cols=106 Identities=15% Similarity=0.154 Sum_probs=82.8
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGC-SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF 232 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga-~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~f 232 (317)
.++.+|||+|||+|..++.++..+. .+|+++|+++.++ +.+++|++.+|+. ++++++|+.+....+ ..+.|
T Consensus 245 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l-~~~~~~~~~~g~~--~~~~~~D~~~~~~~~-----~~~~f 316 (429)
T 1sqg_A 245 QNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRL-SRVYDNLKRLGMK--ATVKQGDGRYPSQWC-----GEQQF 316 (429)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTH-HHHHHHHHHTTCC--CEEEECCTTCTHHHH-----TTCCE
T ss_pred CCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHH-HHHHHHHHHcCCC--eEEEeCchhhchhhc-----ccCCC
Confidence 4678999999999999998887643 5899999999999 9999999999983 789999987764333 13679
Q ss_pred cEEEECCCCCC-cc---------------H-------HHHHHHHHHcCCcCCCeEEEEEe
Q 021116 233 DYMSVTPPYTA-VD---------------Y-------EVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 233 DlV~~dPPy~~-~~---------------~-------~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
|+|++||||.. +. . ..+++.+ .++|+|||++++++
T Consensus 317 D~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a--~~~LkpGG~lvyst 374 (429)
T 1sqg_A 317 DRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAI--WPHLKTGGTLVYAT 374 (429)
T ss_dssp EEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHH--GGGEEEEEEEEEEE
T ss_pred CEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHH--HHhcCCCCEEEEEE
Confidence 99999999853 11 0 1233333 46899999998765
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.31 E-value=2.5e-11 Score=105.06 Aligned_cols=104 Identities=13% Similarity=-0.010 Sum_probs=81.2
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccE
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDl 234 (317)
++ +|||+|||+|.++..+++.|. +|+++|+++.++ +.|+++++..+. +++++++|+.+.. ...++||+
T Consensus 30 ~~-~vLdiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~-~~a~~~~~~~~~--~~~~~~~d~~~~~-------~~~~~fD~ 97 (202)
T 2kw5_A 30 QG-KILCLAEGEGRNACFLASLGY-EVTAVDQSSVGL-AKAKQLAQEKGV--KITTVQSNLADFD-------IVADAWEG 97 (202)
T ss_dssp SS-EEEECCCSCTHHHHHHHTTTC-EEEEECSSHHHH-HHHHHHHHHHTC--CEEEECCBTTTBS-------CCTTTCSE
T ss_pred CC-CEEEECCCCCHhHHHHHhCCC-eEEEEECCHHHH-HHHHHHHHhcCC--ceEEEEcChhhcC-------CCcCCccE
Confidence 45 999999999999998888876 799999999999 999999988876 4899999987641 23468999
Q ss_pred EEECCCCCC-ccHHHHHHHHHHcCCcCCCeEEEEEeCCC
Q 021116 235 MSVTPPYTA-VDYEVLMAQISKSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 235 V~~dPPy~~-~~~~~~l~~L~~~~lLkpgG~ivv~~~~~ 272 (317)
|++...+.. ......++.+. ++|+|||++++.....
T Consensus 98 v~~~~~~~~~~~~~~~l~~~~--~~L~pgG~l~~~~~~~ 134 (202)
T 2kw5_A 98 IVSIFCHLPSSLRQQLYPKVY--QGLKPGGVFILEGFAP 134 (202)
T ss_dssp EEEECCCCCHHHHHHHHHHHH--TTCCSSEEEEEEEECT
T ss_pred EEEEhhcCCHHHHHHHHHHHH--HhcCCCcEEEEEEecc
Confidence 998643221 13445555554 6999999999986543
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.31 E-value=7e-12 Score=115.14 Aligned_cols=103 Identities=16% Similarity=0.132 Sum_probs=83.3
Q ss_pred CCCCeEEEECCCcchHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHhHHHh-CCCCceEEEEecHHHHHHHHhhhcCCCC
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWT-GFLDVSSIHTVRVETFLERAEQFVGKDG 230 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~--Ga~~V~aVDin~~al~~~ar~N~~~~-gl~~~v~ii~gD~~~~l~~~~~~~~~~~ 230 (317)
.++.+|||+|||+|.+++.++.. +..+|+++|+++.++ +.|++|++.+ |. ++++++.+|+.+.+ ..+
T Consensus 109 ~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~-~~a~~~~~~~~g~-~~v~~~~~d~~~~~--------~~~ 178 (275)
T 1yb2_A 109 RPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNL-KKAMDNLSEFYDI-GNVRTSRSDIADFI--------SDQ 178 (275)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHH-HHHHHHHHTTSCC-TTEEEECSCTTTCC--------CSC
T ss_pred CCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHH-HHHHHHHHhcCCC-CcEEEEECchhccC--------cCC
Confidence 35789999999999999988775 245899999999999 9999999988 85 45999999987632 236
Q ss_pred CccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCCC
Q 021116 231 PFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 231 ~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~ 272 (317)
+||+|++|+|.. ...++.+. ++|+|||++++.++..
T Consensus 179 ~fD~Vi~~~~~~----~~~l~~~~--~~LkpgG~l~i~~~~~ 214 (275)
T 1yb2_A 179 MYDAVIADIPDP----WNHVQKIA--SMMKPGSVATFYLPNF 214 (275)
T ss_dssp CEEEEEECCSCG----GGSHHHHH--HTEEEEEEEEEEESSH
T ss_pred CccEEEEcCcCH----HHHHHHHH--HHcCCCCEEEEEeCCH
Confidence 799999998743 34455554 3799999999988755
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.1e-11 Score=114.47 Aligned_cols=109 Identities=12% Similarity=0.077 Sum_probs=82.8
Q ss_pred CCCeEEEECCCcchHHHHHHH--cCCCEEEEEeCCHHHHHHHHHHhHHHh-CCCCceEEEEecHHHHHHHHhhhcCCCCC
Q 021116 155 RPGRWLDLYSGTGSVGIEAIS--RGCSEVHFVEMDPWVVSNVLIPNLEWT-GFLDVSSIHTVRVETFLERAEQFVGKDGP 231 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas--~Ga~~V~aVDin~~al~~~ar~N~~~~-gl~~~v~ii~gD~~~~l~~~~~~~~~~~~ 231 (317)
++.+|||+|||+|.++..++. .+..+|+++|+++.++ +.|++|++.. +..++++++++|+.++..... .....++
T Consensus 36 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~-~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~-~~~~~~~ 113 (299)
T 3g5t_A 36 ERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMI-KTAEVIKEGSPDTYKNVSFKISSSDDFKFLGA-DSVDKQK 113 (299)
T ss_dssp CCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHH-HHHHHHHHHCC-CCTTEEEEECCTTCCGGGCT-TTTTSSC
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHH-HHHHHHHHhccCCCCceEEEEcCHHhCCcccc-ccccCCC
Confidence 578999999999999998875 3556899999999999 9999999887 445679999999876421000 0000168
Q ss_pred ccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEE
Q 021116 232 FDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVV 267 (317)
Q Consensus 232 fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv 267 (317)
||+|++.-..+..+....++.+. ++|+|||++++
T Consensus 114 fD~V~~~~~l~~~~~~~~l~~~~--~~LkpgG~l~i 147 (299)
T 3g5t_A 114 IDMITAVECAHWFDFEKFQRSAY--ANLRKDGTIAI 147 (299)
T ss_dssp EEEEEEESCGGGSCHHHHHHHHH--HHEEEEEEEEE
T ss_pred eeEEeHhhHHHHhCHHHHHHHHH--HhcCCCcEEEE
Confidence 99999976543336677777775 48999999987
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.2e-11 Score=109.45 Aligned_cols=107 Identities=19% Similarity=0.144 Sum_probs=81.0
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCC------CEEEEEeCCHHHHHHHHHHhHHHhCC----CCceEEEEecHHHHHHHHh
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGC------SEVHFVEMDPWVVSNVLIPNLEWTGF----LDVSSIHTVRVETFLERAE 223 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga------~~V~aVDin~~al~~~ar~N~~~~gl----~~~v~ii~gD~~~~l~~~~ 223 (317)
.++.+|||+|||+|.+++.++.... .+|+++|+++.++ +.|++|++.+++ .++++++.+|+.+......
T Consensus 79 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~-~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 157 (227)
T 2pbf_A 79 KPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLV-NFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEK 157 (227)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHH-HHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHH
T ss_pred CCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHH-HHHHHHHHHcCccccccCCEEEEECChHhcccccC
Confidence 3578999999999999998877543 4899999999999 999999998883 3469999999876421000
Q ss_pred hhcCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCC
Q 021116 224 QFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPL 271 (317)
Q Consensus 224 ~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~ 271 (317)
...++||+|+++.++.. +++.+. +.|+|||++++....
T Consensus 158 ---~~~~~fD~I~~~~~~~~-----~~~~~~--~~LkpgG~lv~~~~~ 195 (227)
T 2pbf_A 158 ---KELGLFDAIHVGASASE-----LPEILV--DLLAENGKLIIPIEE 195 (227)
T ss_dssp ---HHHCCEEEEEECSBBSS-----CCHHHH--HHEEEEEEEEEEEEE
T ss_pred ---ccCCCcCEEEECCchHH-----HHHHHH--HhcCCCcEEEEEEcc
Confidence 00267999999987642 123332 268999999998874
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.31 E-value=2.8e-12 Score=119.10 Aligned_cols=111 Identities=14% Similarity=0.094 Sum_probs=77.9
Q ss_pred CCCCeEEEECCCcchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHhHHHhCCC---------------------------
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFL--------------------------- 205 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~-Ga~~V~aVDin~~al~~~ar~N~~~~gl~--------------------------- 205 (317)
.++.+|||+|||+|.+++.++.. +..+|++||+++.++ +.|++|++..+..
T Consensus 45 ~~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (292)
T 3g07_A 45 FRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLI-HSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKR 123 (292)
T ss_dssp TTTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHH-HHHHHTC---------------------------------
T ss_pred cCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHH-HHHHHHHHhhhhhhcccccccccccccccccccccccccc
Confidence 36789999999999999998876 556899999999999 9999998876533
Q ss_pred ------------------------------CceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCc-------cHHH
Q 021116 206 ------------------------------DVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAV-------DYEV 248 (317)
Q Consensus 206 ------------------------------~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~-------~~~~ 248 (317)
++++++++|+......+ ++...++||+|++......- ....
T Consensus 124 ~~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~--~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~ 201 (292)
T 3g07_A 124 SCFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDL--VEAQTPEYDVVLCLSLTKWVHLNWGDEGLKR 201 (292)
T ss_dssp ------------------CCSSTTCCSSTTTTEEEEECCCCCSSHHH--HTTCCCCEEEEEEESCHHHHHHHHHHHHHHH
T ss_pred ccccchhhhccCccccccccccccccccccccceEEecccccCcccc--ccccCCCcCEEEEChHHHHhhhcCCHHHHHH
Confidence 57999999986432111 01235789999997532111 2334
Q ss_pred HHHHHHHcCCcCCCeEEEEEe
Q 021116 249 LMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 249 ~l~~L~~~~lLkpgG~ivv~~ 269 (317)
+++.+. ++|+|||+++++.
T Consensus 202 ~l~~~~--~~LkpGG~lil~~ 220 (292)
T 3g07_A 202 MFRRIY--RHLRPGGILVLEP 220 (292)
T ss_dssp HHHHHH--HHEEEEEEEEEEC
T ss_pred HHHHHH--HHhCCCcEEEEec
Confidence 445444 5899999999974
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.30 E-value=8.1e-12 Score=111.51 Aligned_cols=103 Identities=14% Similarity=0.044 Sum_probs=79.1
Q ss_pred CCCeEEEECCCcchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~-Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
++.+|||+|||+|.+++.++.. |..+|+++|+++.++ +.|++|++.+ ++++++.+|+.+..... +. .+.||
T Consensus 74 ~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~-~~a~~~~~~~---~~v~~~~~d~~~~~~~~---~~-~~~~D 145 (230)
T 1fbn_A 74 RDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIM-RELLDACAER---ENIIPILGDANKPQEYA---NI-VEKVD 145 (230)
T ss_dssp TTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHH-HHHHHHTTTC---TTEEEEECCTTCGGGGT---TT-SCCEE
T ss_pred CCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHH-HHHHHHhhcC---CCeEEEECCCCCccccc---cc-CccEE
Confidence 5789999999999999988876 556899999999999 9999998765 45999999987621100 11 26799
Q ss_pred EEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEE
Q 021116 234 YMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVE 268 (317)
Q Consensus 234 lV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~ 268 (317)
+|+.|+|.. ......++.+. ++|+|||++++.
T Consensus 146 ~v~~~~~~~-~~~~~~l~~~~--~~LkpgG~l~i~ 177 (230)
T 1fbn_A 146 VIYEDVAQP-NQAEILIKNAK--WFLKKGGYGMIA 177 (230)
T ss_dssp EEEECCCST-THHHHHHHHHH--HHEEEEEEEEEE
T ss_pred EEEEecCCh-hHHHHHHHHHH--HhCCCCcEEEEE
Confidence 999987532 23455566654 479999999985
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.30 E-value=2.7e-11 Score=105.63 Aligned_cols=116 Identities=19% Similarity=0.173 Sum_probs=86.8
Q ss_pred HHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHH
Q 021116 138 GAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (317)
Q Consensus 138 ~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~ 217 (317)
..++..+.. ..+.+|||+|||+|.++..++..|. +|+++|+++.++ +.++++ .+++++.+|+.+
T Consensus 42 ~~~~~~~~~-------~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~-~~a~~~-------~~~~~~~~~~~~ 105 (227)
T 3e8s_A 42 QAILLAILG-------RQPERVLDLGCGEGWLLRALADRGI-EAVGVDGDRTLV-DAARAA-------GAGEVHLASYAQ 105 (227)
T ss_dssp HHHHHHHHH-------TCCSEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHH-HHHHHT-------CSSCEEECCHHH
T ss_pred HHHHHHhhc-------CCCCEEEEeCCCCCHHHHHHHHCCC-EEEEEcCCHHHH-HHHHHh-------cccccchhhHHh
Confidence 345555554 3578999999999999998888866 799999999999 999887 235688899877
Q ss_pred HHHHHhhhcCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCCCCC
Q 021116 218 FLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTD 274 (317)
Q Consensus 218 ~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~~~ 274 (317)
..... .....+||+|++...+...+....++.+. ++|+|||++++.......
T Consensus 106 ~~~~~---~~~~~~fD~v~~~~~l~~~~~~~~l~~~~--~~L~pgG~l~~~~~~~~~ 157 (227)
T 3e8s_A 106 LAEAK---VPVGKDYDLICANFALLHQDIIELLSAMR--TLLVPGGALVIQTLHPWS 157 (227)
T ss_dssp HHTTC---SCCCCCEEEEEEESCCCSSCCHHHHHHHH--HTEEEEEEEEEEECCTTT
T ss_pred hcccc---cccCCCccEEEECchhhhhhHHHHHHHHH--HHhCCCeEEEEEecCccc
Confidence 63211 01234599999987766556677777776 489999999998765433
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.30 E-value=1.4e-11 Score=109.11 Aligned_cols=112 Identities=13% Similarity=0.068 Sum_probs=85.9
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEec
Q 021116 135 VVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVR 214 (317)
Q Consensus 135 ~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD 214 (317)
.+...+.+.+.. .++.+|||+|||+|.++..++..+ .+|+++|+++.++ +.+++|+..++ +++++.+|
T Consensus 57 ~~~~~~~~~~~~-------~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~vD~~~~~~-~~a~~~~~~~~---~v~~~~~d 124 (231)
T 1vbf_A 57 NLGIFMLDELDL-------HKGQKVLEIGTGIGYYTALIAEIV-DKVVSVEINEKMY-NYASKLLSYYN---NIKLILGD 124 (231)
T ss_dssp HHHHHHHHHTTC-------CTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHH-HHHHHHHTTCS---SEEEEESC
T ss_pred HHHHHHHHhcCC-------CCCCEEEEEcCCCCHHHHHHHHHc-CEEEEEeCCHHHH-HHHHHHHhhcC---CeEEEECC
Confidence 445555555533 467899999999999999888877 5899999999999 99999998776 58999999
Q ss_pred HHHHHHHHhhhcCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCCC
Q 021116 215 VETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 215 ~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~ 272 (317)
+.+.+. ..++||+|+++.++..- . +.+. ++|+|||++++..+..
T Consensus 125 ~~~~~~-------~~~~fD~v~~~~~~~~~-~----~~~~--~~L~pgG~l~~~~~~~ 168 (231)
T 1vbf_A 125 GTLGYE-------EEKPYDRVVVWATAPTL-L----CKPY--EQLKEGGIMILPIGVG 168 (231)
T ss_dssp GGGCCG-------GGCCEEEEEESSBBSSC-C----HHHH--HTEEEEEEEEEEECSS
T ss_pred cccccc-------cCCCccEEEECCcHHHH-H----HHHH--HHcCCCcEEEEEEcCC
Confidence 876321 13689999999765421 1 2232 3799999999988754
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.30 E-value=5.2e-12 Score=124.71 Aligned_cols=108 Identities=12% Similarity=0.031 Sum_probs=82.1
Q ss_pred CCCCeEEEECCCcchHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCC
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGP 231 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~--Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~ 231 (317)
.++.+|||+|||+|..++.++.. +..+|+++|+++.++ +.+++|++.+|+.+ ++++++|+.++...+ .++.
T Consensus 258 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l-~~~~~~~~~~g~~~-v~~~~~D~~~~~~~~-----~~~~ 330 (450)
T 2yxl_A 258 KPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRM-KRLKDFVKRMGIKI-VKPLVKDARKAPEII-----GEEV 330 (450)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHH-HHHHHHHHHTTCCS-EEEECSCTTCCSSSS-----CSSC
T ss_pred CCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHH-HHHHHHHHHcCCCc-EEEEEcChhhcchhh-----ccCC
Confidence 46789999999999999987763 325899999999999 99999999999864 999999987642111 1257
Q ss_pred ccEEEECCCCCC-cc---------------H-------HHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 232 FDYMSVTPPYTA-VD---------------Y-------EVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 232 fDlV~~dPPy~~-~~---------------~-------~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
||+|++|||+.. +. . ..+++.+ .++|+|||++++.+-
T Consensus 331 fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a--~~~LkpGG~lvy~tc 390 (450)
T 2yxl_A 331 ADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESA--ARLVKPGGRLLYTTC 390 (450)
T ss_dssp EEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHH--HTTEEEEEEEEEEES
T ss_pred CCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHH--HHhcCCCcEEEEEeC
Confidence 999999999853 21 0 2333333 379999999886543
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=8.8e-12 Score=111.49 Aligned_cols=117 Identities=15% Similarity=0.084 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEe
Q 021116 134 EVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTV 213 (317)
Q Consensus 134 ~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~g 213 (317)
..+...+.+.+.. .++.+|||+|||+|.+++.++..+..+|+++|+++.++ +.|++|++.+++.+ ++++.+
T Consensus 77 ~~~~~~~~~~l~~-------~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~-~~a~~~~~~~~~~~-v~~~~~ 147 (235)
T 1jg1_A 77 PHMVAIMLEIANL-------KPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELV-EFAKRNLERAGVKN-VHVILG 147 (235)
T ss_dssp HHHHHHHHHHHTC-------CTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHH-HHHHHHHHHTTCCS-EEEEES
T ss_pred HHHHHHHHHhcCC-------CCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHH-HHHHHHHHHcCCCC-cEEEEC
Confidence 4455566666643 46789999999999999988776425799999999999 99999999999865 999999
Q ss_pred cHHHHHHHHhhhcCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCCCC
Q 021116 214 RVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRT 273 (317)
Q Consensus 214 D~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~~ 273 (317)
|+...+. ....||+|+++.+.... .. .+. +.|+|||++++.++...
T Consensus 148 d~~~~~~-------~~~~fD~Ii~~~~~~~~-~~----~~~--~~L~pgG~lvi~~~~~~ 193 (235)
T 1jg1_A 148 DGSKGFP-------PKAPYDVIIVTAGAPKI-PE----PLI--EQLKIGGKLIIPVGSYH 193 (235)
T ss_dssp CGGGCCG-------GGCCEEEEEECSBBSSC-CH----HHH--HTEEEEEEEEEEECSSS
T ss_pred CcccCCC-------CCCCccEEEECCcHHHH-HH----HHH--HhcCCCcEEEEEEecCC
Confidence 9732211 12459999998764321 12 232 37999999999988553
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.30 E-value=8.9e-12 Score=117.62 Aligned_cols=108 Identities=15% Similarity=0.044 Sum_probs=80.5
Q ss_pred CCCCeEEEECCCcchHHHHHHHc-CC-CEEEEEeCCHHHHHHHHHHhHHHhC----------CCCceEEEEecHHHHHHH
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISR-GC-SEVHFVEMDPWVVSNVLIPNLEWTG----------FLDVSSIHTVRVETFLER 221 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~-Ga-~~V~aVDin~~al~~~ar~N~~~~g----------l~~~v~ii~gD~~~~l~~ 221 (317)
.++.+|||+|||+|.+++.++.. |. .+|+++|+++.++ +.|++|++.++ ..++++++.+|+.+....
T Consensus 104 ~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~-~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~~ 182 (336)
T 2b25_A 104 NPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHH-DLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATED 182 (336)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHH-HHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC--
T ss_pred CCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHH-HHHHHHHHHhhcccccccccccCCceEEEECChHHcccc
Confidence 46889999999999999988876 54 6899999999999 99999998643 235699999998765321
Q ss_pred HhhhcCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCCCC
Q 021116 222 AEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRT 273 (317)
Q Consensus 222 ~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~~ 273 (317)
+ ..++||+|++|+|.... .++.+. +.|+|||++++..+...
T Consensus 183 ~-----~~~~fD~V~~~~~~~~~----~l~~~~--~~LkpgG~lv~~~~~~~ 223 (336)
T 2b25_A 183 I-----KSLTFDAVALDMLNPHV----TLPVFY--PHLKHGGVCAVYVVNIT 223 (336)
T ss_dssp ----------EEEEEECSSSTTT----THHHHG--GGEEEEEEEEEEESSHH
T ss_pred c-----CCCCeeEEEECCCCHHH----HHHHHH--HhcCCCcEEEEEeCCHH
Confidence 1 13579999999864322 344443 58999999998776443
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.30 E-value=8.3e-12 Score=110.57 Aligned_cols=103 Identities=11% Similarity=0.087 Sum_probs=80.3
Q ss_pred CCCCeEEEECCCcchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF 232 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~f 232 (317)
.++.+|||+|||+|.++..++... ..+|+++|+++.++ +.|++++...+ +++++++|+.+.. . .++|
T Consensus 43 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~-~~a~~~~~~~~---~~~~~~~d~~~~~-------~-~~~f 110 (234)
T 3dtn_A 43 TENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKML-EIAKNRFRGNL---KVKYIEADYSKYD-------F-EEKY 110 (234)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHH-HHHHHHTCSCT---TEEEEESCTTTCC-------C-CSCE
T ss_pred CCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHH-HHHHHhhccCC---CEEEEeCchhccC-------C-CCCc
Confidence 467899999999999999888763 45899999999999 99999987654 5999999987642 1 2689
Q ss_pred cEEEECCCCCCccHH---HHHHHHHHcCCcCCCeEEEEEeC
Q 021116 233 DYMSVTPPYTAVDYE---VLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 233 DlV~~dPPy~~~~~~---~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
|+|+++..+....-. ..++.+. ++|+|||++++...
T Consensus 111 D~v~~~~~l~~~~~~~~~~~l~~~~--~~LkpgG~l~~~~~ 149 (234)
T 3dtn_A 111 DMVVSALSIHHLEDEDKKELYKRSY--SILKESGIFINADL 149 (234)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHH--HHEEEEEEEEEEEE
T ss_pred eEEEEeCccccCCHHHHHHHHHHHH--HhcCCCcEEEEEEe
Confidence 999998665432222 3555554 58999999998763
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.3e-11 Score=110.85 Aligned_cols=103 Identities=11% Similarity=0.116 Sum_probs=82.9
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
.++.+|||+|||+|.++..++..|..+|+++|+++.++ +.+++++. ..+++++.+|+.++ +...++||
T Consensus 43 ~~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~-~~a~~~~~----~~~~~~~~~d~~~~-------~~~~~~fD 110 (253)
T 3g5l_A 43 FNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERML-TEAKRKTT----SPVVCYEQKAIEDI-------AIEPDAYN 110 (253)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHH-HHHHHHCC----CTTEEEEECCGGGC-------CCCTTCEE
T ss_pred cCCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHH-HHHHHhhc----cCCeEEEEcchhhC-------CCCCCCeE
Confidence 36889999999999999999888877899999999999 99998875 34589999998754 22357899
Q ss_pred EEEECCCCC-CccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 234 YMSVTPPYT-AVDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 234 lV~~dPPy~-~~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
+|++.-.+. ..+....++.+. ++|+|||++++...
T Consensus 111 ~v~~~~~l~~~~~~~~~l~~~~--~~LkpgG~l~~~~~ 146 (253)
T 3g5l_A 111 VVLSSLALHYIASFDDICKKVY--INLKSSGSFIFSVE 146 (253)
T ss_dssp EEEEESCGGGCSCHHHHHHHHH--HHEEEEEEEEEEEE
T ss_pred EEEEchhhhhhhhHHHHHHHHH--HHcCCCcEEEEEeC
Confidence 999875432 235667777765 48999999999754
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=6.8e-12 Score=109.84 Aligned_cols=102 Identities=10% Similarity=0.089 Sum_probs=80.4
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
.++.+|||+|||+|.++..++..+. +|+++|+++.++ +.+++|+...+ +++++++|+.+.. ..++||
T Consensus 50 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~-~~a~~~~~~~~---~~~~~~~d~~~~~--------~~~~fD 116 (216)
T 3ofk_A 50 GAVSNGLEIGCAAGAFTEKLAPHCK-RLTVIDVMPRAI-GRACQRTKRWS---HISWAATDILQFS--------TAELFD 116 (216)
T ss_dssp SSEEEEEEECCTTSHHHHHHGGGEE-EEEEEESCHHHH-HHHHHHTTTCS---SEEEEECCTTTCC--------CSCCEE
T ss_pred CCCCcEEEEcCCCCHHHHHHHHcCC-EEEEEECCHHHH-HHHHHhcccCC---CeEEEEcchhhCC--------CCCCcc
Confidence 3578999999999999998888875 799999999999 99999987643 5999999987653 247899
Q ss_pred EEEECCCCCC-ccH---HHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 234 YMSVTPPYTA-VDY---EVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 234 lV~~dPPy~~-~~~---~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
+|+++..+.. .+. ...++.+. ++|+|||++++...
T Consensus 117 ~v~~~~~l~~~~~~~~~~~~l~~~~--~~L~pgG~l~~~~~ 155 (216)
T 3ofk_A 117 LIVVAEVLYYLEDMTQMRTAIDNMV--KMLAPGGHLVFGSA 155 (216)
T ss_dssp EEEEESCGGGSSSHHHHHHHHHHHH--HTEEEEEEEEEEEE
T ss_pred EEEEccHHHhCCCHHHHHHHHHHHH--HHcCCCCEEEEEec
Confidence 9999765432 233 34455554 58999999999753
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=5.7e-12 Score=113.01 Aligned_cols=122 Identities=10% Similarity=0.019 Sum_probs=88.9
Q ss_pred CCCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCce
Q 021116 129 VRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVS 208 (317)
Q Consensus 129 ~rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v 208 (317)
.++......+.+.+.+.. .++.+|||+|||+|.++..++.....+|+++|+++.++ +.+++++... +++
T Consensus 36 ~~~~~~~~~~~~~~~~~~-------~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~-~~a~~~~~~~---~~~ 104 (266)
T 3ujc_A 36 ISSGGLEATKKILSDIEL-------NENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIV-NMANERVSGN---NKI 104 (266)
T ss_dssp CSTTHHHHHHHHTTTCCC-------CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHH-HHHHHTCCSC---TTE
T ss_pred cccchHHHHHHHHHhcCC-------CCCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHH-HHHHHHhhcC---CCe
Confidence 355555555555444322 36789999999999999988876234799999999999 9999887654 469
Q ss_pred EEEEecHHHHHHHHhhhcCCCCCccEEEECCCCC-C--ccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 209 SIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYT-A--VDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 209 ~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~-~--~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
+++.+|+.+. +..+++||+|++..... . .+....++.+. ++|+|||++++...
T Consensus 105 ~~~~~d~~~~-------~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~--~~L~pgG~l~~~~~ 160 (266)
T 3ujc_A 105 IFEANDILTK-------EFPENNFDLIYSRDAILALSLENKNKLFQKCY--KWLKPTGTLLITDY 160 (266)
T ss_dssp EEEECCTTTC-------CCCTTCEEEEEEESCGGGSCHHHHHHHHHHHH--HHEEEEEEEEEEEE
T ss_pred EEEECccccC-------CCCCCcEEEEeHHHHHHhcChHHHHHHHHHHH--HHcCCCCEEEEEEe
Confidence 9999998764 12357899999975433 2 24455566554 58999999998764
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.30 E-value=1.6e-11 Score=111.94 Aligned_cols=105 Identities=15% Similarity=0.089 Sum_probs=82.7
Q ss_pred CCCCeEEEECCCcchHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHhHHHh-C-CCCceEEEEecHHHHHHHHhhhcCCC
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWT-G-FLDVSSIHTVRVETFLERAEQFVGKD 229 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~-G-a~~V~aVDin~~al~~~ar~N~~~~-g-l~~~v~ii~gD~~~~l~~~~~~~~~~ 229 (317)
.++.+|||+|||+|.+++.++.. + ..+|+++|+++.++ +.|++|++.+ | +.++++++.+|+.+.. ...
T Consensus 98 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~-~~a~~~~~~~~g~~~~~v~~~~~d~~~~~-------~~~ 169 (280)
T 1i9g_A 98 FPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHA-EHARRNVSGCYGQPPDNWRLVVSDLADSE-------LPD 169 (280)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHH-HHHHHHHHHHHTSCCTTEEEECSCGGGCC-------CCT
T ss_pred CCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHH-HHHHHHHHHhcCCCCCcEEEEECchHhcC-------CCC
Confidence 46789999999999999988774 3 45899999999999 9999999988 5 4456999999987641 124
Q ss_pred CCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCCC
Q 021116 230 GPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 230 ~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~ 272 (317)
+.||+|++|+|.. ...++.+. ++|+|||++++..+..
T Consensus 170 ~~~D~v~~~~~~~----~~~l~~~~--~~L~pgG~l~~~~~~~ 206 (280)
T 1i9g_A 170 GSVDRAVLDMLAP----WEVLDAVS--RLLVAGGVLMVYVATV 206 (280)
T ss_dssp TCEEEEEEESSCG----GGGHHHHH--HHEEEEEEEEEEESSH
T ss_pred CceeEEEECCcCH----HHHHHHHH--HhCCCCCEEEEEeCCH
Confidence 6799999998732 23444443 3689999999987654
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.29 E-value=1.9e-11 Score=108.18 Aligned_cols=120 Identities=11% Similarity=0.116 Sum_probs=90.2
Q ss_pred hHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEE
Q 021116 133 MEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHT 212 (317)
Q Consensus 133 ~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~ 212 (317)
.....+.+...+... ..++.+|||+|||+|.++..++..|. +|+++|+++.++ +.+++++...+. ++++++
T Consensus 20 ~~~~~~~~~~~l~~~-----~~~~~~vLdiG~G~G~~~~~l~~~~~-~~~~~D~s~~~~-~~a~~~~~~~~~--~~~~~~ 90 (246)
T 1y8c_A 20 YKKWSDFIIEKCVEN-----NLVFDDYLDLACGTGNLTENLCPKFK-NTWAVDLSQEML-SEAENKFRSQGL--KPRLAC 90 (246)
T ss_dssp HHHHHHHHHHHHHTT-----TCCTTEEEEETCTTSTTHHHHGGGSS-EEEEECSCHHHH-HHHHHHHHHTTC--CCEEEC
T ss_pred HHHHHHHHHHHHHHh-----CCCCCeEEEeCCCCCHHHHHHHHCCC-cEEEEECCHHHH-HHHHHHHhhcCC--CeEEEe
Confidence 344556666666542 13678999999999999998888875 799999999999 999999988776 488999
Q ss_pred ecHHHHHHHHhhhcCCCCCccEEEECC-CCCC----ccHHHHHHHHHHcCCcCCCeEEEEEeCC
Q 021116 213 VRVETFLERAEQFVGKDGPFDYMSVTP-PYTA----VDYEVLMAQISKSALVGKDSFIVVEYPL 271 (317)
Q Consensus 213 gD~~~~l~~~~~~~~~~~~fDlV~~dP-Py~~----~~~~~~l~~L~~~~lLkpgG~ivv~~~~ 271 (317)
+|+.+.. . .++||+|++.. .+.. ......++.+. ++|+|||+++++...
T Consensus 91 ~d~~~~~-------~-~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~--~~L~pgG~l~~~~~~ 144 (246)
T 1y8c_A 91 QDISNLN-------I-NRKFDLITCCLDSTNYIIDSDDLKKYFKAVS--NHLKEGGVFIFDINS 144 (246)
T ss_dssp CCGGGCC-------C-SCCEEEEEECTTGGGGCCSHHHHHHHHHHHH--TTEEEEEEEEEEEEC
T ss_pred cccccCC-------c-cCCceEEEEcCccccccCCHHHHHHHHHHHH--HhcCCCcEEEEEecC
Confidence 9987642 1 26899999976 4322 13344555554 699999999997654
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.29 E-value=7.8e-12 Score=108.42 Aligned_cols=107 Identities=15% Similarity=0.134 Sum_probs=81.8
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
.++.+|||+|||+|.+++.++..|..+|+++|+++.++ +.+++|+.. . ++++++.+|+.+. +...++||
T Consensus 41 ~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~-~~a~~~~~~--~-~~i~~~~~d~~~~-------~~~~~~fD 109 (215)
T 2pxx_A 41 RPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVV-AAMQACYAH--V-PQLRWETMDVRKL-------DFPSASFD 109 (215)
T ss_dssp CTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHH-HHHHHHTTT--C-TTCEEEECCTTSC-------CSCSSCEE
T ss_pred CCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHH-HHHHHhccc--C-CCcEEEEcchhcC-------CCCCCccc
Confidence 35789999999999999999888866899999999999 999998764 2 4589999998764 12346899
Q ss_pred EEEECCCCCCc----------------cHHHHHHHHHHcCCcCCCeEEEEEeCCCC
Q 021116 234 YMSVTPPYTAV----------------DYEVLMAQISKSALVGKDSFIVVEYPLRT 273 (317)
Q Consensus 234 lV~~dPPy~~~----------------~~~~~l~~L~~~~lLkpgG~ivv~~~~~~ 273 (317)
+|++++++... .....++.+. ++|+|||++++......
T Consensus 110 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~LkpgG~li~~~~~~~ 163 (215)
T 2pxx_A 110 VVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVS--RVLVPGGRFISMTSAAP 163 (215)
T ss_dssp EEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHH--HHEEEEEEEEEEESCCH
T ss_pred EEEECcchhhhccccccccccccchhHHHHHHHHHHH--HhCcCCCEEEEEeCCCc
Confidence 99998765210 2234444443 58999999998876553
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.29 E-value=5.4e-12 Score=116.05 Aligned_cols=98 Identities=12% Similarity=0.048 Sum_probs=78.2
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccE
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDl 234 (317)
.+.+|||+|||+|.++..++..|. +|++||+|+.++ +.|+++ .+++++++|+.+. +..+++||+
T Consensus 39 ~~~~vLDvGcGtG~~~~~l~~~~~-~v~gvD~s~~ml-~~a~~~-------~~v~~~~~~~e~~-------~~~~~sfD~ 102 (257)
T 4hg2_A 39 ARGDALDCGCGSGQASLGLAEFFE-RVHAVDPGEAQI-RQALRH-------PRVTYAVAPAEDT-------GLPPASVDV 102 (257)
T ss_dssp CSSEEEEESCTTTTTHHHHHTTCS-EEEEEESCHHHH-HTCCCC-------TTEEEEECCTTCC-------CCCSSCEEE
T ss_pred CCCCEEEEcCCCCHHHHHHHHhCC-EEEEEeCcHHhh-hhhhhc-------CCceeehhhhhhh-------cccCCcccE
Confidence 467999999999999998887775 799999999998 776532 3589999998754 345689999
Q ss_pred EEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 235 MSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 235 V~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
|++.--++..+.+..+..+. ++|+|||++++...
T Consensus 103 v~~~~~~h~~~~~~~~~e~~--rvLkpgG~l~~~~~ 136 (257)
T 4hg2_A 103 AIAAQAMHWFDLDRFWAELR--RVARPGAVFAAVTY 136 (257)
T ss_dssp EEECSCCTTCCHHHHHHHHH--HHEEEEEEEEEEEE
T ss_pred EEEeeehhHhhHHHHHHHHH--HHcCCCCEEEEEEC
Confidence 99976666666777777765 58999999977654
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=3.9e-11 Score=106.00 Aligned_cols=104 Identities=13% Similarity=0.094 Sum_probs=81.1
Q ss_pred CCCCeEEEECCCcchHHHHHHHc-CC-CEEEEEeCCHHHHHHHHHHhHHHhCC----CCceEEEEecHHHHHHHHhhhcC
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISR-GC-SEVHFVEMDPWVVSNVLIPNLEWTGF----LDVSSIHTVRVETFLERAEQFVG 227 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~-Ga-~~V~aVDin~~al~~~ar~N~~~~gl----~~~v~ii~gD~~~~l~~~~~~~~ 227 (317)
.++.+|||+|||+|.++..++.. |. .+|+++|+++.++ +.+++|++.+++ .++++++.+|+.....
T Consensus 76 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~-~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~------- 147 (226)
T 1i1n_A 76 HEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELV-DDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYA------- 147 (226)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHH-HHHHHHHHHHCTHHHHTSSEEEEESCGGGCCG-------
T ss_pred CCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHH-HHHHHHHHhhcccccCCCcEEEEECCcccCcc-------
Confidence 36789999999999999987765 43 4899999999999 999999998764 3469999999874321
Q ss_pred CCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCCC
Q 021116 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 228 ~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~ 272 (317)
..++||+|+++.++.. +++.+. +.|+|||++++.....
T Consensus 148 ~~~~fD~i~~~~~~~~-----~~~~~~--~~LkpgG~lv~~~~~~ 185 (226)
T 1i1n_A 148 EEAPYDAIHVGAAAPV-----VPQALI--DQLKPGGRLILPVGPA 185 (226)
T ss_dssp GGCCEEEEEECSBBSS-----CCHHHH--HTEEEEEEEEEEESCT
T ss_pred cCCCcCEEEECCchHH-----HHHHHH--HhcCCCcEEEEEEecC
Confidence 1367999999987642 223333 3799999999988754
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.29 E-value=6.3e-12 Score=116.92 Aligned_cols=92 Identities=18% Similarity=0.168 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEe
Q 021116 134 EVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTV 213 (317)
Q Consensus 134 ~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~g 213 (317)
..+.+.+.+.+.. .++.+|||+|||+|.++..++..+. +|++||+|+.++ +.+++|++.++..++++++++
T Consensus 14 ~~i~~~i~~~~~~-------~~~~~VLDiG~G~G~lt~~L~~~~~-~v~~vD~~~~~~-~~a~~~~~~~~~~~~v~~~~~ 84 (285)
T 1zq9_A 14 PLIINSIIDKAAL-------RPTDVVLEVGPGTGNMTVKLLEKAK-KVVACELDPRLV-AELHKRVQGTPVASKLQVLVG 84 (285)
T ss_dssp HHHHHHHHHHTCC-------CTTCEEEEECCTTSTTHHHHHHHSS-EEEEEESCHHHH-HHHHHHHTTSTTGGGEEEEES
T ss_pred HHHHHHHHHhcCC-------CCCCEEEEEcCcccHHHHHHHhhCC-EEEEEECCHHHH-HHHHHHHHhcCCCCceEEEEc
Confidence 4456666666543 3678999999999999999888865 799999999999 999999987776567999999
Q ss_pred cHHHHHHHHhhhcCCCCCccEEEECCCCCC
Q 021116 214 RVETFLERAEQFVGKDGPFDYMSVTPPYTA 243 (317)
Q Consensus 214 D~~~~l~~~~~~~~~~~~fDlV~~dPPy~~ 243 (317)
|+.+.. .+.||+|++|+||..
T Consensus 85 D~~~~~---------~~~fD~vv~nlpy~~ 105 (285)
T 1zq9_A 85 DVLKTD---------LPFFDTCVANLPYQI 105 (285)
T ss_dssp CTTTSC---------CCCCSEEEEECCGGG
T ss_pred ceeccc---------chhhcEEEEecCccc
Confidence 987641 247999999999974
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.28 E-value=4.8e-11 Score=106.79 Aligned_cols=103 Identities=19% Similarity=0.237 Sum_probs=80.1
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccE
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDl 234 (317)
++.+|||+|||+|.+++.++..|. +|+++|+++.++ +.|++|+...+. +++++++|+.+.. ..++||+
T Consensus 41 ~~~~vLDlGcG~G~~~~~l~~~~~-~v~gvD~s~~~l-~~a~~~~~~~~~--~v~~~~~d~~~~~--------~~~~fD~ 108 (252)
T 1wzn_A 41 EVRRVLDLACGTGIPTLELAERGY-EVVGLDLHEEML-RVARRKAKERNL--KIEFLQGDVLEIA--------FKNEFDA 108 (252)
T ss_dssp CCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHHHHTTC--CCEEEESCGGGCC--------CCSCEEE
T ss_pred CCCEEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHH-HHHHHHHHhcCC--ceEEEECChhhcc--------cCCCccE
Confidence 568999999999999999888876 799999999999 999999988776 4899999987642 1357999
Q ss_pred EEECC---CCCC-ccHHHHHHHHHHcCCcCCCeEEEEEeCC
Q 021116 235 MSVTP---PYTA-VDYEVLMAQISKSALVGKDSFIVVEYPL 271 (317)
Q Consensus 235 V~~dP---Py~~-~~~~~~l~~L~~~~lLkpgG~ivv~~~~ 271 (317)
|++.. ++.. ......++.+. ++|+|||+++++.+.
T Consensus 109 v~~~~~~~~~~~~~~~~~~l~~~~--~~L~pgG~li~~~~~ 147 (252)
T 1wzn_A 109 VTMFFSTIMYFDEEDLRKLFSKVA--EALKPGGVFITDFPC 147 (252)
T ss_dssp EEECSSGGGGSCHHHHHHHHHHHH--HHEEEEEEEEEEEEC
T ss_pred EEEcCCchhcCCHHHHHHHHHHHH--HHcCCCeEEEEeccc
Confidence 99742 2211 12344555554 589999999987653
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.28 E-value=5.9e-12 Score=117.02 Aligned_cols=108 Identities=8% Similarity=-0.058 Sum_probs=85.6
Q ss_pred CCCCeEEEECCCcchHHHHHH--HcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCC
Q 021116 154 LRPGRWLDLYSGTGSVGIEAI--SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGP 231 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaa--s~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~ 231 (317)
.++.+|||+|||+|.+++.++ .....+|+++|+++.++ +.|++|+..+++.++++++++|+.+.. . .++
T Consensus 117 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~~~-------~-~~~ 187 (305)
T 3ocj_A 117 RPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEAL-DGATRLAAGHALAGQITLHRQDAWKLD-------T-REG 187 (305)
T ss_dssp CTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHH-HHHHHHHTTSTTGGGEEEEECCGGGCC-------C-CSC
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHH-HHHHHHHHhcCCCCceEEEECchhcCC-------c-cCC
Confidence 367899999999999998764 33345899999999999 999999999998888999999988742 1 278
Q ss_pred ccEEEECCCCCC-ccHHH---HHHHHHHcCCcCCCeEEEEEeCCC
Q 021116 232 FDYMSVTPPYTA-VDYEV---LMAQISKSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 232 fDlV~~dPPy~~-~~~~~---~l~~L~~~~lLkpgG~ivv~~~~~ 272 (317)
||+|+++.++.. .+... +++.+. ++|+|||++++.....
T Consensus 188 fD~v~~~~~~~~~~~~~~~~~~l~~~~--~~LkpgG~l~i~~~~~ 230 (305)
T 3ocj_A 188 YDLLTSNGLNIYEPDDARVTELYRRFW--QALKPGGALVTSFLTP 230 (305)
T ss_dssp EEEEECCSSGGGCCCHHHHHHHHHHHH--HHEEEEEEEEEECCCC
T ss_pred eEEEEECChhhhcCCHHHHHHHHHHHH--HhcCCCeEEEEEecCC
Confidence 999999887643 23333 455554 5899999999987543
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.28 E-value=5.1e-12 Score=112.36 Aligned_cols=104 Identities=14% Similarity=-0.027 Sum_probs=82.7
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccE
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDl 234 (317)
++.+|||+|||+|.++..++..|. +|+++|+++.++ +.|++++...+..++++++.+|+.++. ..++||+
T Consensus 66 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~~~~fD~ 135 (235)
T 3lcc_A 66 PLGRALVPGCGGGHDVVAMASPER-FVVGLDISESAL-AKANETYGSSPKAEYFSFVKEDVFTWR--------PTELFDL 135 (235)
T ss_dssp CCEEEEEETCTTCHHHHHHCBTTE-EEEEECSCHHHH-HHHHHHHTTSGGGGGEEEECCCTTTCC--------CSSCEEE
T ss_pred CCCCEEEeCCCCCHHHHHHHhCCC-eEEEEECCHHHH-HHHHHHhhccCCCcceEEEECchhcCC--------CCCCeeE
Confidence 456999999999999998877665 699999999999 999999987665567999999987642 2358999
Q ss_pred EEECCCCCC-c--cHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 235 MSVTPPYTA-V--DYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 235 V~~dPPy~~-~--~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
|++...+.. . .....++.+. ++|+|||++++...
T Consensus 136 v~~~~~l~~~~~~~~~~~l~~~~--~~LkpgG~l~~~~~ 172 (235)
T 3lcc_A 136 IFDYVFFCAIEPEMRPAWAKSMY--ELLKPDGELITLMY 172 (235)
T ss_dssp EEEESSTTTSCGGGHHHHHHHHH--HHEEEEEEEEEEEC
T ss_pred EEEChhhhcCCHHHHHHHHHHHH--HHCCCCcEEEEEEe
Confidence 998765432 2 4566677665 48999999987654
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.6e-11 Score=109.64 Aligned_cols=120 Identities=18% Similarity=0.109 Sum_probs=88.6
Q ss_pred CCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceE
Q 021116 130 RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSS 209 (317)
Q Consensus 130 rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ 209 (317)
++..+.+...+...+... .++.+|||+|||+|.++..++..|+ +|+++|+++.++ +.++++ ++
T Consensus 22 ~~~~~~~~~~~~~~l~~~------~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~-~~a~~~---------~~ 84 (240)
T 3dli_A 22 RGSRELVKARLRRYIPYF------KGCRRVLDIGCGRGEFLELCKEEGI-ESIGVDINEDMI-KFCEGK---------FN 84 (240)
T ss_dssp TCCHHHHHHHHGGGGGGT------TTCSCEEEETCTTTHHHHHHHHHTC-CEEEECSCHHHH-HHHHTT---------SE
T ss_pred CCCHHHHHHHHHHHHhhh------cCCCeEEEEeCCCCHHHHHHHhCCC-cEEEEECCHHHH-HHHHhh---------cc
Confidence 455555555554444331 3578999999999999998888876 599999999998 888876 56
Q ss_pred EEEecHHHHHHHHhhhcCCCCCccEEEECCCCC-Cc--cHHHHHHHHHHcCCcCCCeEEEEEeCCCC
Q 021116 210 IHTVRVETFLERAEQFVGKDGPFDYMSVTPPYT-AV--DYEVLMAQISKSALVGKDSFIVVEYPLRT 273 (317)
Q Consensus 210 ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~-~~--~~~~~l~~L~~~~lLkpgG~ivv~~~~~~ 273 (317)
++.+|+.+++..+ .+++||+|++.-... .. .+...++.+. ++|+|||++++......
T Consensus 85 ~~~~d~~~~~~~~-----~~~~fD~i~~~~~l~~~~~~~~~~~l~~~~--~~LkpgG~l~~~~~~~~ 144 (240)
T 3dli_A 85 VVKSDAIEYLKSL-----PDKYLDGVMISHFVEHLDPERLFELLSLCY--SKMKYSSYIVIESPNPT 144 (240)
T ss_dssp EECSCHHHHHHTS-----CTTCBSEEEEESCGGGSCGGGHHHHHHHHH--HHBCTTCCEEEEEECTT
T ss_pred eeeccHHHHhhhc-----CCCCeeEEEECCchhhCCcHHHHHHHHHHH--HHcCCCcEEEEEeCCcc
Confidence 8889998875322 357899999864432 22 4466777765 48999999999876544
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=1.9e-11 Score=113.64 Aligned_cols=107 Identities=15% Similarity=0.213 Sum_probs=84.7
Q ss_pred CCCeEEEECCCcchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHhHHHhC--C-CCceEEEEecHHHHHHHHhhhcCCCC
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTG--F-LDVSSIHTVRVETFLERAEQFVGKDG 230 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~G-a~~V~aVDin~~al~~~ar~N~~~~g--l-~~~v~ii~gD~~~~l~~~~~~~~~~~ 230 (317)
.+.+|||+|||+|.++.++++.. ..+|++||+|+.++ +.|++|+..++ + .++++++.+|+.+++... .+
T Consensus 78 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i-~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~------~~ 150 (283)
T 2i7c_A 78 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVI-EVSKIYFKNISCGYEDKRVNVFIEDASKFLENV------TN 150 (283)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHH-HHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHC------CS
T ss_pred CCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHH-HHHHHHhHHhccccCCCcEEEEECChHHHHHhC------CC
Confidence 56899999999999999988763 56899999999999 99999986542 2 357999999999887542 46
Q ss_pred CccEEEECCCCCCcc----H-HHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 231 PFDYMSVTPPYTAVD----Y-EVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 231 ~fDlV~~dPPy~~~~----~-~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
+||+|++|++..... + .+.++.+. +.|+|||++++...
T Consensus 151 ~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~--~~L~pgG~lv~~~~ 193 (283)
T 2i7c_A 151 TYDVIIVDSSDPIGPAETLFNQNFYEKIY--NALKPNGYCVAQCE 193 (283)
T ss_dssp CEEEEEEECCCTTTGGGGGSSHHHHHHHH--HHEEEEEEEEEECC
T ss_pred CceEEEEcCCCCCCcchhhhHHHHHHHHH--HhcCCCcEEEEECC
Confidence 899999998643221 1 46666665 48999999999865
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=1.6e-11 Score=115.26 Aligned_cols=109 Identities=15% Similarity=0.152 Sum_probs=81.9
Q ss_pred CCCeEEEECCCcchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHhHHHh---CCCCceEEEEecHHHHHHHHhhhcCCCC
Q 021116 155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWT---GFLDVSSIHTVRVETFLERAEQFVGKDG 230 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~-Ga~~V~aVDin~~al~~~ar~N~~~~---gl~~~v~ii~gD~~~~l~~~~~~~~~~~ 230 (317)
.+.+|||+|||+|.++.++++. +..+|++||+|+.++ +.|++|+... ....+++++.+|+.+++... ..+
T Consensus 95 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i-~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~-----~~~ 168 (304)
T 3bwc_A 95 KPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVM-EQSKQHFPQISRSLADPRATVRVGDGLAFVRQT-----PDN 168 (304)
T ss_dssp SCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHH-HHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSS-----CTT
T ss_pred CCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHH-HHHHHHhHHhhcccCCCcEEEEECcHHHHHHhc-----cCC
Confidence 5689999999999999998876 356899999999999 9999987431 12356999999999876421 146
Q ss_pred CccEEEECCCCCCccH-----HHHHHHHHHcCCcCCCeEEEEEeCC
Q 021116 231 PFDYMSVTPPYTAVDY-----EVLMAQISKSALVGKDSFIVVEYPL 271 (317)
Q Consensus 231 ~fDlV~~dPPy~~~~~-----~~~l~~L~~~~lLkpgG~ivv~~~~ 271 (317)
+||+|++|++...... .+.++.+. ++|+|||++++....
T Consensus 169 ~fDvIi~d~~~~~~~~~~l~~~~~l~~~~--~~LkpgG~lv~~~~~ 212 (304)
T 3bwc_A 169 TYDVVIIDTTDPAGPASKLFGEAFYKDVL--RILKPDGICCNQGES 212 (304)
T ss_dssp CEEEEEEECC---------CCHHHHHHHH--HHEEEEEEEEEEECC
T ss_pred ceeEEEECCCCccccchhhhHHHHHHHHH--HhcCCCcEEEEecCC
Confidence 8999999987543211 45566554 489999999998654
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.27 E-value=2e-11 Score=107.89 Aligned_cols=115 Identities=16% Similarity=0.116 Sum_probs=86.0
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecH
Q 021116 136 VKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRV 215 (317)
Q Consensus 136 v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~ 215 (317)
..+.+.+.+... .++.+|||+|||+|.++..++..+. +|+++|+++.++ +.|+++... +++++++|+
T Consensus 29 ~~~~~~~~l~~~------~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~-~~a~~~~~~-----~v~~~~~d~ 95 (250)
T 2p7i_A 29 MHPFMVRAFTPF------FRPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAI-SHAQGRLKD-----GITYIHSRF 95 (250)
T ss_dssp HHHHHHHHHGGG------CCSSCEEEESCTTSHHHHHHTTTCS-CEEEEESCHHHH-HHHHHHSCS-----CEEEEESCG
T ss_pred HHHHHHHHHHhh------cCCCcEEEECCCCCHHHHHHHHhCC-cEEEEeCCHHHH-HHHHHhhhC-----CeEEEEccH
Confidence 344455555542 3578999999999999998888776 699999999999 999887643 489999998
Q ss_pred HHHHHHHhhhcCCCCCccEEEECCCC-CCccHHHHHHHHHHcCCcCCCeEEEEEeCCC
Q 021116 216 ETFLERAEQFVGKDGPFDYMSVTPPY-TAVDYEVLMAQISKSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 216 ~~~l~~~~~~~~~~~~fDlV~~dPPy-~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~ 272 (317)
.+.. .+++||+|++.--. +..+....++.+.. ++|+|||++++..+..
T Consensus 96 ~~~~--------~~~~fD~v~~~~~l~~~~~~~~~l~~~~~-~~LkpgG~l~i~~~~~ 144 (250)
T 2p7i_A 96 EDAQ--------LPRRYDNIVLTHVLEHIDDPVALLKRIND-DWLAEGGRLFLVCPNA 144 (250)
T ss_dssp GGCC--------CSSCEEEEEEESCGGGCSSHHHHHHHHHH-TTEEEEEEEEEEEECT
T ss_pred HHcC--------cCCcccEEEEhhHHHhhcCHHHHHHHHHH-HhcCCCCEEEEEcCCh
Confidence 7752 24789999986432 22345666666640 5999999999987543
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.27 E-value=8.5e-12 Score=111.51 Aligned_cols=105 Identities=14% Similarity=0.132 Sum_probs=81.2
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccE
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDl 234 (317)
++.+|||+|||+|.++..+++.+..+|+++|+++.++ +.|++|+...+. .+++++.+|+.++. ...++||+
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~-~~a~~~~~~~~~-~~~~~~~~d~~~~~-------~~~~~fD~ 149 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFL-VQAKTYLGEEGK-RVRNYFCCGLQDFT-------PEPDSYDV 149 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHH-HHHHHHTGGGGG-GEEEEEECCGGGCC-------CCSSCEEE
T ss_pred CCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHH-HHHHHHhhhcCC-ceEEEEEcChhhcC-------CCCCCEEE
Confidence 5789999999999999988877766899999999999 999999887653 45889999987642 23457999
Q ss_pred EEECCCCCC-cc--HHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 235 MSVTPPYTA-VD--YEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 235 V~~dPPy~~-~~--~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
|+++-.... .+ +...++.+. ++|+|||++++...
T Consensus 150 v~~~~~l~~~~~~~~~~~l~~~~--~~LkpgG~l~i~~~ 186 (241)
T 2ex4_A 150 IWIQWVIGHLTDQHLAEFLRRCK--GSLRPNGIIVIKDN 186 (241)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHH--HHEEEEEEEEEEEE
T ss_pred EEEcchhhhCCHHHHHHHHHHHH--HhcCCCeEEEEEEc
Confidence 999754321 12 345566554 58999999998654
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=3.6e-12 Score=123.00 Aligned_cols=115 Identities=17% Similarity=0.148 Sum_probs=85.2
Q ss_pred CCCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHhHHHhCCCC
Q 021116 129 VRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLD 206 (317)
Q Consensus 129 ~rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~--Ga~~V~aVDin~~al~~~ar~N~~~~gl~~ 206 (317)
...|...+.+.+.+.+.. .++.+|||+|||+|.+++.++.+ ...+++++|+++.++ +.| +
T Consensus 20 ~~~TP~~l~~~~~~~~~~-------~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~-~~a----------~ 81 (421)
T 2ih2_A 20 RVETPPEVVDFMVSLAEA-------PRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKAL-DLP----------P 81 (421)
T ss_dssp -CCCCHHHHHHHHHHCCC-------CTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTC-CCC----------T
T ss_pred eEeCCHHHHHHHHHhhcc-------CCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHH-HhC----------C
Confidence 345667788888777643 24679999999999999988864 346899999999998 776 3
Q ss_pred ceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCccH---------H---------------------HHHHHHHHc
Q 021116 207 VSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDY---------E---------------------VLMAQISKS 256 (317)
Q Consensus 207 ~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~~---------~---------------------~~l~~L~~~ 256 (317)
+++++++|+.++. ..+.||+|++||||..... + ..++.+ .
T Consensus 82 ~~~~~~~D~~~~~--------~~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~--~ 151 (421)
T 2ih2_A 82 WAEGILADFLLWE--------PGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKA--V 151 (421)
T ss_dssp TEEEEESCGGGCC--------CSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHH--H
T ss_pred CCcEEeCChhhcC--------ccCCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHH--H
Confidence 4889999987652 2368999999999964211 1 122222 3
Q ss_pred CCcCCCeEEEEEeCC
Q 021116 257 ALVGKDSFIVVEYPL 271 (317)
Q Consensus 257 ~lLkpgG~ivv~~~~ 271 (317)
++|++||++++..+.
T Consensus 152 ~~Lk~~G~~~~i~p~ 166 (421)
T 2ih2_A 152 RLLKPGGVLVFVVPA 166 (421)
T ss_dssp HHEEEEEEEEEEEEG
T ss_pred HHhCCCCEEEEEECh
Confidence 589999999888764
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.9e-11 Score=107.43 Aligned_cols=105 Identities=13% Similarity=0.243 Sum_probs=82.9
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCC----CceEEEEecHHHHHHHHhhhcCCCC
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFL----DVSSIHTVRVETFLERAEQFVGKDG 230 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~----~~v~ii~gD~~~~l~~~~~~~~~~~ 230 (317)
++.+|||+|||+|.+++.++..|. +|+++|+++.++ +.+++|++..++. ++++++.+|+.+. +...+
T Consensus 30 ~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~-------~~~~~ 100 (235)
T 3sm3_A 30 EDDEILDIGCGSGKISLELASKGY-SVTGIDINSEAI-RLAETAARSPGLNQKTGGKAEFKVENASSL-------SFHDS 100 (235)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHTTCCSCCSSSSCEEEEEECCTTSC-------CSCTT
T ss_pred CCCeEEEECCCCCHHHHHHHhCCC-eEEEEECCHHHH-HHHHHHHHhcCCccccCcceEEEEeccccc-------CCCCC
Confidence 578999999999999999888876 799999999999 9999999887763 3589999998753 12357
Q ss_pred CccEEEECCCCCC-ccHH---HHHHHHHHcCCcCCCeEEEEEeC
Q 021116 231 PFDYMSVTPPYTA-VDYE---VLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 231 ~fDlV~~dPPy~~-~~~~---~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
+||+|+++..+.. .+.+ ..++.+. ++|+|||++++...
T Consensus 101 ~~D~v~~~~~l~~~~~~~~~~~~l~~~~--~~L~pgG~l~~~~~ 142 (235)
T 3sm3_A 101 SFDFAVMQAFLTSVPDPKERSRIIKEVF--RVLKPGAYLYLVEF 142 (235)
T ss_dssp CEEEEEEESCGGGCCCHHHHHHHHHHHH--HHEEEEEEEEEEEE
T ss_pred ceeEEEEcchhhcCCCHHHHHHHHHHHH--HHcCCCeEEEEEEC
Confidence 8999999765432 2334 5566554 58999999988754
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.26 E-value=2.6e-11 Score=110.12 Aligned_cols=105 Identities=14% Similarity=0.107 Sum_probs=85.6
Q ss_pred CCCCeEEEECCCcchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF 232 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~f 232 (317)
.++.+|||+|||+|.++..++..+ ..+|+++|+++.++ +.+++|+..+++. +++++.+|+.+.. ...++|
T Consensus 36 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~-~~a~~~~~~~~~~-~~~~~~~d~~~~~-------~~~~~f 106 (276)
T 3mgg_A 36 PPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESL-EKARENTEKNGIK-NVKFLQANIFSLP-------FEDSSF 106 (276)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHH-HHHHHHHHHTTCC-SEEEEECCGGGCC-------SCTTCE
T ss_pred CCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHHHHcCCC-CcEEEEcccccCC-------CCCCCe
Confidence 367899999999999999888774 45899999999999 9999999999886 4999999987642 235789
Q ss_pred cEEEECCCCC-CccHHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 233 DYMSVTPPYT-AVDYEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 233 DlV~~dPPy~-~~~~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
|+|+++..+. ..+....++.+. ++|+|||++++..
T Consensus 107 D~v~~~~~l~~~~~~~~~l~~~~--~~L~pgG~l~~~~ 142 (276)
T 3mgg_A 107 DHIFVCFVLEHLQSPEEALKSLK--KVLKPGGTITVIE 142 (276)
T ss_dssp EEEEEESCGGGCSCHHHHHHHHH--HHEEEEEEEEEEE
T ss_pred eEEEEechhhhcCCHHHHHHHHH--HHcCCCcEEEEEE
Confidence 9999976542 235567777775 4899999999875
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.26 E-value=4.2e-11 Score=113.16 Aligned_cols=83 Identities=8% Similarity=0.106 Sum_probs=68.0
Q ss_pred CCCCeEEEECCCcchHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCC
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGP 231 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~--Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~ 231 (317)
.++.+|||+|||+|..++.++.. +..+|+++|+++.++ +.+++|++.+|+. +++++++|+.++..... ....
T Consensus 101 ~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l-~~~~~n~~r~g~~-~v~~~~~D~~~~~~~~~----~~~~ 174 (309)
T 2b9e_A 101 PPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRL-ASMATLLARAGVS-CCELAEEDFLAVSPSDP----RYHE 174 (309)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHH-HHHHHHHHHTTCC-SEEEEECCGGGSCTTCG----GGTT
T ss_pred CCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHH-HHHHHHHHHcCCC-eEEEEeCChHhcCcccc----ccCC
Confidence 46889999999999999987763 446899999999999 9999999999985 49999999876532100 0147
Q ss_pred ccEEEECCCCC
Q 021116 232 FDYMSVTPPYT 242 (317)
Q Consensus 232 fDlV~~dPPy~ 242 (317)
||.|++|||+.
T Consensus 175 fD~Vl~D~PcS 185 (309)
T 2b9e_A 175 VHYILLDPSCS 185 (309)
T ss_dssp EEEEEECCCCC
T ss_pred CCEEEEcCCcC
Confidence 99999999984
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.25 E-value=1.4e-11 Score=110.15 Aligned_cols=104 Identities=13% Similarity=0.135 Sum_probs=80.9
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
.++.+|||+|||+|.++..++..+..+|+++|+++.++ +.+++++... ++++++++|+.+.. ...++||
T Consensus 92 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~-~~a~~~~~~~---~~~~~~~~d~~~~~-------~~~~~fD 160 (254)
T 1xtp_A 92 HGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHML-EEAKRELAGM---PVGKFILASMETAT-------LPPNTYD 160 (254)
T ss_dssp CCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHH-HHHHHHTTTS---SEEEEEESCGGGCC-------CCSSCEE
T ss_pred cCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHH-HHHHHHhccC---CceEEEEccHHHCC-------CCCCCeE
Confidence 35789999999999999988877766899999999999 9999987654 45899999987641 2346899
Q ss_pred EEEECCCCCCc---cHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 234 YMSVTPPYTAV---DYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 234 lV~~dPPy~~~---~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
+|++......- .....++.+. ++|+|||++++..+
T Consensus 161 ~v~~~~~l~~~~~~~~~~~l~~~~--~~LkpgG~l~i~~~ 198 (254)
T 1xtp_A 161 LIVIQWTAIYLTDADFVKFFKHCQ--QALTPNGYIFFKEN 198 (254)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHH--HHEEEEEEEEEEEE
T ss_pred EEEEcchhhhCCHHHHHHHHHHHH--HhcCCCeEEEEEec
Confidence 99987543221 2345555554 58999999998875
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.25 E-value=3.4e-11 Score=101.51 Aligned_cols=120 Identities=9% Similarity=0.095 Sum_probs=88.5
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
.++.+|||+|||+|.++..++..+. +|+++|+++.++ +.++++ .++++++.+| .. ...++||
T Consensus 16 ~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~-~~a~~~------~~~v~~~~~d-~~---------~~~~~~D 77 (170)
T 3i9f_A 16 GKKGVIVDYGCGNGFYCKYLLEFAT-KLYCIDINVIAL-KEVKEK------FDSVITLSDP-KE---------IPDNSVD 77 (170)
T ss_dssp SCCEEEEEETCTTCTTHHHHHTTEE-EEEEECSCHHHH-HHHHHH------CTTSEEESSG-GG---------SCTTCEE
T ss_pred CCCCeEEEECCCCCHHHHHHHhhcC-eEEEEeCCHHHH-HHHHHh------CCCcEEEeCC-CC---------CCCCceE
Confidence 3577999999999999998888775 899999999998 999888 2358899998 22 1357899
Q ss_pred EEEECCCCC-CccHHHHHHHHHHcCCcCCCeEEEEEeCCCCC---------------ccccCCCeEEEEEeecCce
Q 021116 234 YMSVTPPYT-AVDYEVLMAQISKSALVGKDSFIVVEYPLRTD---------------MLDTCGCLVKIKDRRFGRT 293 (317)
Q Consensus 234 lV~~dPPy~-~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~~~---------------l~~~~~~~~~~~~r~yG~~ 293 (317)
+|++...+. ..+....++.+. ++|+|||++++....... +.....||.+++...++..
T Consensus 78 ~v~~~~~l~~~~~~~~~l~~~~--~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Gf~~~~~~~~~~~ 151 (170)
T 3i9f_A 78 FILFANSFHDMDDKQHVISEVK--RILKDDGRVIIIDWRKENTGIGPPLSIRMDEKDYMGWFSNFVVEKRFNPTPY 151 (170)
T ss_dssp EEEEESCSTTCSCHHHHHHHHH--HHEEEEEEEEEEEECSSCCSSSSCGGGCCCHHHHHHHTTTEEEEEEECSSTT
T ss_pred EEEEccchhcccCHHHHHHHHH--HhcCCCCEEEEEEcCccccccCchHhhhcCHHHHHHHHhCcEEEEccCCCCc
Confidence 999876543 345667777765 489999999987543321 1111128888777666643
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.25 E-value=3.3e-11 Score=106.78 Aligned_cols=103 Identities=14% Similarity=0.045 Sum_probs=81.7
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
.++.+|||+|||+|.++..++..|..+|+++|+++.++ +.++++... ++++++.+|+.+.. ...++||
T Consensus 42 ~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~-~~a~~~~~~----~~~~~~~~d~~~~~-------~~~~~fD 109 (243)
T 3bkw_A 42 VGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKML-ARARAAGPD----TGITYERADLDKLH-------LPQDSFD 109 (243)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHH-HHHHHTSCS----SSEEEEECCGGGCC-------CCTTCEE
T ss_pred cCCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHH-HHHHHhccc----CCceEEEcChhhcc-------CCCCCce
Confidence 36789999999999999988888766899999999999 999988653 35889999987642 2346899
Q ss_pred EEEECCCCC-CccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 234 YMSVTPPYT-AVDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 234 lV~~dPPy~-~~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
+|++...+. ..+....++.+. ++|+|||++++...
T Consensus 110 ~v~~~~~l~~~~~~~~~l~~~~--~~L~pgG~l~~~~~ 145 (243)
T 3bkw_A 110 LAYSSLALHYVEDVARLFRTVH--QALSPGGHFVFSTE 145 (243)
T ss_dssp EEEEESCGGGCSCHHHHHHHHH--HHEEEEEEEEEEEE
T ss_pred EEEEeccccccchHHHHHHHHH--HhcCcCcEEEEEeC
Confidence 999876542 235566777765 48999999998764
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.25 E-value=4.2e-11 Score=103.75 Aligned_cols=101 Identities=13% Similarity=0.075 Sum_probs=80.0
Q ss_pred CCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEE
Q 021116 156 PGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYM 235 (317)
Q Consensus 156 ~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV 235 (317)
+.+|||+|||+|.++..++..|. +|+++|+++.++ +.++++. .+++++++|+.++. ..+++||+|
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~-~~a~~~~------~~~~~~~~d~~~~~-------~~~~~fD~v 106 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASLGH-QIEGLEPATRLV-ELARQTH------PSVTFHHGTITDLS-------DSPKRWAGL 106 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHTTC-CEEEECCCHHHH-HHHHHHC------TTSEEECCCGGGGG-------GSCCCEEEE
T ss_pred CCeEEEecCCCCHHHHHHHhcCC-eEEEEeCCHHHH-HHHHHhC------CCCeEEeCcccccc-------cCCCCeEEE
Confidence 67999999999999998888876 699999999999 9998872 24889999987742 235789999
Q ss_pred EECCCCCC---ccHHHHHHHHHHcCCcCCCeEEEEEeCCCC
Q 021116 236 SVTPPYTA---VDYEVLMAQISKSALVGKDSFIVVEYPLRT 273 (317)
Q Consensus 236 ~~dPPy~~---~~~~~~l~~L~~~~lLkpgG~ivv~~~~~~ 273 (317)
++...+.. .+....++.+. ++|+|||++++......
T Consensus 107 ~~~~~l~~~~~~~~~~~l~~~~--~~L~pgG~l~i~~~~~~ 145 (203)
T 3h2b_A 107 LAWYSLIHMGPGELPDALVALR--MAVEDGGGLLMSFFSGP 145 (203)
T ss_dssp EEESSSTTCCTTTHHHHHHHHH--HTEEEEEEEEEEEECCS
T ss_pred EehhhHhcCCHHHHHHHHHHHH--HHcCCCcEEEEEEccCC
Confidence 99654332 25667777775 48999999998875443
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=99.25 E-value=1.2e-11 Score=125.10 Aligned_cols=125 Identities=14% Similarity=0.017 Sum_probs=91.9
Q ss_pred CCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHc----C---------------CCEEEEEeCCHHH
Q 021116 130 RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR----G---------------CSEVHFVEMDPWV 190 (317)
Q Consensus 130 rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~----G---------------a~~V~aVDin~~a 190 (317)
..|...+.+.+.+++.. ..+.+|+|+|||||.+.+.++.. + ...++|+|+|+.+
T Consensus 151 fyTP~~iv~~mv~~l~p-------~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~ 223 (541)
T 2ar0_A 151 YFTPRPLIKTIIHLLKP-------QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGT 223 (541)
T ss_dssp CCCCHHHHHHHHHHHCC-------CTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHH
T ss_pred eeCCHHHHHHHHHHhcc-------CCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHH
Confidence 45666677778777754 35789999999999999987642 1 1269999999999
Q ss_pred HHHHHHHhHHHhCCCC----ceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCcc---------------HHHHHH
Q 021116 191 VSNVLIPNLEWTGFLD----VSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVD---------------YEVLMA 251 (317)
Q Consensus 191 l~~~ar~N~~~~gl~~----~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~---------------~~~~l~ 251 (317)
+ ++|+.|+...|+.+ +..++++|....... ..+.||+|++||||.... ....+.
T Consensus 224 ~-~lA~~nl~l~gi~~~~~~~~~I~~gDtL~~~~~------~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~ 296 (541)
T 2ar0_A 224 R-RLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGE------NLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQ 296 (541)
T ss_dssp H-HHHHHHHHTTTCCCBGGGTBSEEESCTTSHHHH------TSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHH
T ss_pred H-HHHHHHHHHhCCCccccccCCeEeCCCcccccc------cccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHH
Confidence 8 99999999888864 267899997654321 136899999999997421 112333
Q ss_pred HHHHcCCcCCCeEEEEEeC
Q 021116 252 QISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 252 ~L~~~~lLkpgG~ivv~~~ 270 (317)
.+. ++|++||++.+..+
T Consensus 297 ~~l--~~Lk~gGr~a~V~p 313 (541)
T 2ar0_A 297 HII--ETLHPGGRAAVVVP 313 (541)
T ss_dssp HHH--HHEEEEEEEEEEEE
T ss_pred HHH--HHhCCCCEEEEEec
Confidence 333 47999999887765
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.24 E-value=3.5e-11 Score=104.34 Aligned_cols=106 Identities=10% Similarity=0.063 Sum_probs=78.9
Q ss_pred CCCCeEEEECCCcchHHHHHH-HcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAI-SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF 232 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaa-s~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~f 232 (317)
.++.+|||+|||+|.+++.++ ..|. +|+++|+++.++ +.++++++..+. +++++++|+.+. +...++|
T Consensus 22 ~~~~~vLDiGcG~G~~~~~~~~~~~~-~v~~vD~s~~~~-~~a~~~~~~~~~--~~~~~~~d~~~~-------~~~~~~f 90 (209)
T 2p8j_A 22 NLDKTVLDCGAGGDLPPLSIFVEDGY-KTYGIEISDLQL-KKAENFSRENNF--KLNISKGDIRKL-------PFKDESM 90 (209)
T ss_dssp SSCSEEEEESCCSSSCTHHHHHHTTC-EEEEEECCHHHH-HHHHHHHHHHTC--CCCEEECCTTSC-------CSCTTCE
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCC-EEEEEECCHHHH-HHHHHHHHhcCC--ceEEEECchhhC-------CCCCCce
Confidence 357899999999999865544 4454 799999999999 999999987763 478999998753 1234689
Q ss_pred cEEEECCCC-CC--ccHHHHHHHHHHcCCcCCCeEEEEEeCCC
Q 021116 233 DYMSVTPPY-TA--VDYEVLMAQISKSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 233 DlV~~dPPy-~~--~~~~~~l~~L~~~~lLkpgG~ivv~~~~~ 272 (317)
|+|++.... +. .+....++.+. ++|+|||++++.....
T Consensus 91 D~v~~~~~l~~~~~~~~~~~l~~~~--~~LkpgG~l~~~~~~~ 131 (209)
T 2p8j_A 91 SFVYSYGTIFHMRKNDVKEAIDEIK--RVLKPGGLACINFLTT 131 (209)
T ss_dssp EEEEECSCGGGSCHHHHHHHHHHHH--HHEEEEEEEEEEEEET
T ss_pred eEEEEcChHHhCCHHHHHHHHHHHH--HHcCCCcEEEEEEecc
Confidence 999986443 22 23445555554 5899999999887543
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.24 E-value=3.1e-11 Score=114.72 Aligned_cols=106 Identities=11% Similarity=-0.027 Sum_probs=82.4
Q ss_pred CeEEEECCCcchHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEE
Q 021116 157 GRWLDLYSGTGSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYM 235 (317)
Q Consensus 157 ~rVLDlgcGtG~l~Ieaas-~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV 235 (317)
.+|||+|||+|.++.++++ ....+|++||+|+.++ +.|++|+.... .++++++.+|+.+++... ..++||+|
T Consensus 91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi-~~Ar~~~~~~~-~~rv~v~~~Da~~~l~~~-----~~~~fDvI 163 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELA-RLSREWFDIPR-APRVKIRVDDARMVAESF-----TPASRDVI 163 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHH-HHHHHHSCCCC-TTTEEEEESCHHHHHHTC-----CTTCEEEE
T ss_pred CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHH-HHHHHhccccC-CCceEEEECcHHHHHhhc-----cCCCCCEE
Confidence 4999999999999999887 3334899999999999 99999986543 357999999999987542 24689999
Q ss_pred EECCCCCCc---c--HHHHHHHHHHcCCcCCCeEEEEEeCC
Q 021116 236 SVTPPYTAV---D--YEVLMAQISKSALVGKDSFIVVEYPL 271 (317)
Q Consensus 236 ~~dPPy~~~---~--~~~~l~~L~~~~lLkpgG~ivv~~~~ 271 (317)
|+|.+.... . ..+.++.+. ++|+|||++++....
T Consensus 164 i~D~~~~~~~~~~L~t~efl~~~~--r~LkpgGvlv~~~~~ 202 (317)
T 3gjy_A 164 IRDVFAGAITPQNFTTVEFFEHCH--RGLAPGGLYVANCGD 202 (317)
T ss_dssp EECCSTTSCCCGGGSBHHHHHHHH--HHEEEEEEEEEEEEE
T ss_pred EECCCCccccchhhhHHHHHHHHH--HhcCCCcEEEEEecC
Confidence 998643221 1 155666665 489999999988763
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.6e-11 Score=113.57 Aligned_cols=104 Identities=13% Similarity=0.117 Sum_probs=72.5
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
.++.+|||+|||+|.+++.++.+|+ +|++||+|+.++ +.|++|++.+.+ +..+...+.. .... ..++||
T Consensus 44 ~~g~~VLDlGcGtG~~a~~La~~g~-~V~gvD~S~~ml-~~Ar~~~~~~~v--~~~~~~~~~~-~~~~------~~~~fD 112 (261)
T 3iv6_A 44 VPGSTVAVIGASTRFLIEKALERGA-SVTVFDFSQRMC-DDLAEALADRCV--TIDLLDITAE-IPKE------LAGHFD 112 (261)
T ss_dssp CTTCEEEEECTTCHHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHTSSSCC--EEEECCTTSC-CCGG------GTTCCS
T ss_pred CCcCEEEEEeCcchHHHHHHHhcCC-EEEEEECCHHHH-HHHHHHHHhccc--eeeeeecccc-cccc------cCCCcc
Confidence 4678999999999999999998876 799999999999 999999865421 1222222210 0000 136899
Q ss_pred EEEECCCCCCc---cHHHHHHHHHHcCCcCCCeEEEEEeCC
Q 021116 234 YMSVTPPYTAV---DYEVLMAQISKSALVGKDSFIVVEYPL 271 (317)
Q Consensus 234 lV~~dPPy~~~---~~~~~l~~L~~~~lLkpgG~ivv~~~~ 271 (317)
+|+++..++.. .....+..+. ++| |||++++++..
T Consensus 113 ~Vv~~~~l~~~~~~~~~~~l~~l~--~lL-PGG~l~lS~~~ 150 (261)
T 3iv6_A 113 FVLNDRLINRFTTEEARRACLGML--SLV-GSGTVRASVKL 150 (261)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHH--HHH-TTSEEEEEEEB
T ss_pred EEEEhhhhHhCCHHHHHHHHHHHH--HhC-cCcEEEEEecc
Confidence 99999765322 2334455554 478 99999998764
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.23 E-value=5.1e-11 Score=107.78 Aligned_cols=109 Identities=13% Similarity=0.032 Sum_probs=80.3
Q ss_pred CCCeEEEECCCcchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHhHHH------hCCCCceEEEEecHHHHHHHHhhhcC
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEW------TGFLDVSSIHTVRVETFLERAEQFVG 227 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~G-a~~V~aVDin~~al~~~ar~N~~~------~gl~~~v~ii~gD~~~~l~~~~~~~~ 227 (317)
++.+|||+|||+|.+++.++... ...|+|||+++.++ +.|++|++. .++. +++++++|+.+.+... .
T Consensus 46 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l-~~A~~~~~~l~~~~~~~~~-nv~~~~~d~~~~l~~~----~ 119 (235)
T 3ckk_A 46 AQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVS-DYVQDRIRALRAAPAGGFQ-NIACLRSNAMKHLPNF----F 119 (235)
T ss_dssp CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHH-HHHHHHHHHHHHSTTCCCT-TEEEEECCTTTCHHHH----C
T ss_pred CCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHH-HHHHHHHHHHHHHHhcCCC-eEEEEECcHHHhhhhh----C
Confidence 46789999999999999887763 45799999999999 999998865 3454 5999999998744321 1
Q ss_pred CCCCccEEEECCC--CCCc-------cHHHHHHHHHHcCCcCCCeEEEEEeCC
Q 021116 228 KDGPFDYMSVTPP--YTAV-------DYEVLMAQISKSALVGKDSFIVVEYPL 271 (317)
Q Consensus 228 ~~~~fDlV~~dPP--y~~~-------~~~~~l~~L~~~~lLkpgG~ivv~~~~ 271 (317)
..++||.|+++-| +.+. ....+++.+. ++|+|||++++....
T Consensus 120 ~~~~~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~--~~LkpGG~l~~~td~ 170 (235)
T 3ckk_A 120 YKGQLTKMFFLFPDPHFKRTKHKWRIISPTLLAEYA--YVLRVGGLVYTITDV 170 (235)
T ss_dssp CTTCEEEEEEESCC-----------CCCHHHHHHHH--HHEEEEEEEEEEESC
T ss_pred CCcCeeEEEEeCCCchhhhhhhhhhhhhHHHHHHHH--HHCCCCCEEEEEeCC
Confidence 3578999987532 2211 1245666665 489999999998764
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.22 E-value=3.9e-11 Score=112.39 Aligned_cols=91 Identities=12% Similarity=0.181 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEe
Q 021116 134 EVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTV 213 (317)
Q Consensus 134 ~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~g 213 (317)
..+.+.+.+.+.. .++.+|||+|||+|.++..++.++ .+|++||+|+.++ +.+++|++.+++ ++++++++
T Consensus 28 ~~i~~~i~~~~~~-------~~~~~VLDiG~G~G~lt~~La~~~-~~v~~vDi~~~~~-~~a~~~~~~~~~-~~v~~~~~ 97 (299)
T 2h1r_A 28 PGILDKIIYAAKI-------KSSDIVLEIGCGTGNLTVKLLPLA-KKVITIDIDSRMI-SEVKKRCLYEGY-NNLEVYEG 97 (299)
T ss_dssp HHHHHHHHHHHCC-------CTTCEEEEECCTTSTTHHHHTTTS-SEEEEECSCHHHH-HHHHHHHHHTTC-CCEEC---
T ss_pred HHHHHHHHHhcCC-------CCcCEEEEEcCcCcHHHHHHHhcC-CEEEEEECCHHHH-HHHHHHHHHcCC-CceEEEEC
Confidence 4456666666643 357899999999999999888775 4799999999999 999999988887 45999999
Q ss_pred cHHHHHHHHhhhcCCCCCccEEEECCCCCC
Q 021116 214 RVETFLERAEQFVGKDGPFDYMSVTPPYTA 243 (317)
Q Consensus 214 D~~~~l~~~~~~~~~~~~fDlV~~dPPy~~ 243 (317)
|+.++. .++||+|++|+||..
T Consensus 98 D~~~~~---------~~~~D~Vv~n~py~~ 118 (299)
T 2h1r_A 98 DAIKTV---------FPKFDVCTANIPYKI 118 (299)
T ss_dssp -CCSSC---------CCCCSEEEEECCGGG
T ss_pred chhhCC---------cccCCEEEEcCCccc
Confidence 987642 257999999999974
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=2e-11 Score=112.85 Aligned_cols=120 Identities=15% Similarity=0.158 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCC--CceEEE
Q 021116 134 EVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFL--DVSSIH 211 (317)
Q Consensus 134 ~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~--~~v~ii 211 (317)
....+.+.+.+.. .+.+|||+|||+|.++..++..|. +|+++|+++.++ +.|++++...++. ++++++
T Consensus 69 ~~~~~~~~~~~~~--------~~~~vLDlGcG~G~~~~~l~~~~~-~v~gvD~s~~~~-~~a~~~~~~~~~~~~~~v~~~ 138 (299)
T 3g2m_A 69 TSEAREFATRTGP--------VSGPVLELAAGMGRLTFPFLDLGW-EVTALELSTSVL-AAFRKRLAEAPADVRDRCTLV 138 (299)
T ss_dssp HHHHHHHHHHHCC--------CCSCEEEETCTTTTTHHHHHTTTC-CEEEEESCHHHH-HHHHHHHHTSCHHHHTTEEEE
T ss_pred cHHHHHHHHhhCC--------CCCcEEEEeccCCHHHHHHHHcCC-eEEEEECCHHHH-HHHHHHHhhcccccccceEEE
Confidence 4445555555532 345999999999999999888875 699999999999 9999999877642 469999
Q ss_pred EecHHHHHHHHhhhcCCCCCccEEEEC-CCCCCc---cHHHHHHHHHHcCCcCCCeEEEEEeCCCC
Q 021116 212 TVRVETFLERAEQFVGKDGPFDYMSVT-PPYTAV---DYEVLMAQISKSALVGKDSFIVVEYPLRT 273 (317)
Q Consensus 212 ~gD~~~~l~~~~~~~~~~~~fDlV~~d-PPy~~~---~~~~~l~~L~~~~lLkpgG~ivv~~~~~~ 273 (317)
++|+.++. ..++||+|++. ..+... .....++.+. ++|+|||++++......
T Consensus 139 ~~d~~~~~--------~~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~--~~L~pgG~l~~~~~~~~ 194 (299)
T 3g2m_A 139 QGDMSAFA--------LDKRFGTVVISSGSINELDEADRRGLYASVR--EHLEPGGKFLLSLAMSE 194 (299)
T ss_dssp ECBTTBCC--------CSCCEEEEEECHHHHTTSCHHHHHHHHHHHH--HHEEEEEEEEEEEECCH
T ss_pred eCchhcCC--------cCCCcCEEEECCcccccCCHHHHHHHHHHHH--HHcCCCcEEEEEeecCc
Confidence 99987642 14789999864 212221 2355566554 58999999999876554
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=3.8e-11 Score=108.46 Aligned_cols=97 Identities=16% Similarity=0.149 Sum_probs=75.8
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccE
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDl 234 (317)
++.+|||+|||+|.++..++..|. +|+++|+++.++ +.|++++. +++++++|+.++. ..++||+
T Consensus 50 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~-~~a~~~~~------~~~~~~~d~~~~~--------~~~~fD~ 113 (263)
T 3pfg_A 50 KAASLLDVACGTGMHLRHLADSFG-TVEGLELSADML-AIARRRNP------DAVLHHGDMRDFS--------LGRRFSA 113 (263)
T ss_dssp TCCEEEEETCTTSHHHHHHTTTSS-EEEEEESCHHHH-HHHHHHCT------TSEEEECCTTTCC--------CSCCEEE
T ss_pred CCCcEEEeCCcCCHHHHHHHHcCC-eEEEEECCHHHH-HHHHhhCC------CCEEEECChHHCC--------ccCCcCE
Confidence 468999999999999998888875 799999999999 99998753 4789999987642 1478999
Q ss_pred EEECC-CCCCc----cHHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 235 MSVTP-PYTAV----DYEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 235 V~~dP-Py~~~----~~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
|++.. .+..- .....++.+. ++|+|||+++++.
T Consensus 114 v~~~~~~l~~~~~~~~~~~~l~~~~--~~L~pgG~l~i~~ 151 (263)
T 3pfg_A 114 VTCMFSSIGHLAGQAELDAALERFA--AHVLPDGVVVVEP 151 (263)
T ss_dssp EEECTTGGGGSCHHHHHHHHHHHHH--HTEEEEEEEEECC
T ss_pred EEEcCchhhhcCCHHHHHHHHHHHH--HhcCCCcEEEEEe
Confidence 99975 43321 2334455554 5899999999974
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.22 E-value=4.5e-11 Score=104.67 Aligned_cols=99 Identities=22% Similarity=0.156 Sum_probs=77.1
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccE
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDl 234 (317)
++.+|||+|||+|.++..++..+. +|+++|+++.++ +.+++++. ++++++.+|+.++. .. ++||+
T Consensus 45 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~-~~a~~~~~-----~~~~~~~~d~~~~~-------~~-~~fD~ 109 (220)
T 3hnr_A 45 SFGNVLEFGVGTGNLTNKLLLAGR-TVYGIEPSREMR-MIAKEKLP-----KEFSITEGDFLSFE-------VP-TSIDT 109 (220)
T ss_dssp CCSEEEEECCTTSHHHHHHHHTTC-EEEEECSCHHHH-HHHHHHSC-----TTCCEESCCSSSCC-------CC-SCCSE
T ss_pred CCCeEEEeCCCCCHHHHHHHhCCC-eEEEEeCCHHHH-HHHHHhCC-----CceEEEeCChhhcC-------CC-CCeEE
Confidence 578999999999999999888865 799999999999 99998865 34788999987642 22 78999
Q ss_pred EEECCCCCC-ccHHH--HHHHHHHcCCcCCCeEEEEEeC
Q 021116 235 MSVTPPYTA-VDYEV--LMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 235 V~~dPPy~~-~~~~~--~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
|+++..+.. .+... .++.+. ++|+|||++++...
T Consensus 110 v~~~~~l~~~~~~~~~~~l~~~~--~~LkpgG~l~i~~~ 146 (220)
T 3hnr_A 110 IVSTYAFHHLTDDEKNVAIAKYS--QLLNKGGKIVFADT 146 (220)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHH--HHSCTTCEEEEEEE
T ss_pred EEECcchhcCChHHHHHHHHHHH--HhcCCCCEEEEEec
Confidence 999765432 22222 565554 58999999999854
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.21 E-value=5.3e-11 Score=105.44 Aligned_cols=103 Identities=13% Similarity=0.115 Sum_probs=79.1
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccE
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDl 234 (317)
++.+|||+|||+|.++..++.. .+|+++|+++.++ +.|++|+..++ .+++++.+|+.+.. ..++||+
T Consensus 33 ~~~~vLdiG~G~G~~~~~l~~~--~~v~~vD~s~~~~-~~a~~~~~~~~--~~~~~~~~d~~~~~--------~~~~fD~ 99 (243)
T 3d2l_A 33 PGKRIADIGCGTGTATLLLADH--YEVTGVDLSEEML-EIAQEKAMETN--RHVDFWVQDMRELE--------LPEPVDA 99 (243)
T ss_dssp TTCEEEEESCTTCHHHHHHTTT--SEEEEEESCHHHH-HHHHHHHHHTT--CCCEEEECCGGGCC--------CSSCEEE
T ss_pred CCCeEEEecCCCCHHHHHHhhC--CeEEEEECCHHHH-HHHHHhhhhcC--CceEEEEcChhhcC--------CCCCcCE
Confidence 4689999999999999988776 5899999999999 99999998776 34899999987642 1368999
Q ss_pred EEECC-CCC-C---ccHHHHHHHHHHcCCcCCCeEEEEEeCCC
Q 021116 235 MSVTP-PYT-A---VDYEVLMAQISKSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 235 V~~dP-Py~-~---~~~~~~l~~L~~~~lLkpgG~ivv~~~~~ 272 (317)
|++.. ... . ......++.+. ++|+|||+++++....
T Consensus 100 v~~~~~~~~~~~~~~~~~~~l~~~~--~~L~pgG~l~~~~~~~ 140 (243)
T 3d2l_A 100 ITILCDSLNYLQTEADVKQTFDSAA--RLLTDGGKLLFDVHSP 140 (243)
T ss_dssp EEECTTGGGGCCSHHHHHHHHHHHH--HHEEEEEEEEEEEECH
T ss_pred EEEeCCchhhcCCHHHHHHHHHHHH--HhcCCCeEEEEEcCCH
Confidence 99864 222 1 12344455544 5899999999976543
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=5.7e-11 Score=103.31 Aligned_cols=102 Identities=16% Similarity=0.112 Sum_probs=78.2
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
.++.+|||+|||+|.++..++..|. +|+++|+++.++ +.+++ .+. .+++++++|+.++. ..++||
T Consensus 45 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~s~~~~-~~a~~----~~~-~~~~~~~~d~~~~~--------~~~~~D 109 (218)
T 3ou2_A 45 NIRGDVLELASGTGYWTRHLSGLAD-RVTALDGSAEMI-AEAGR----HGL-DNVEFRQQDLFDWT--------PDRQWD 109 (218)
T ss_dssp TSCSEEEEESCTTSHHHHHHHHHSS-EEEEEESCHHHH-HHHGG----GCC-TTEEEEECCTTSCC--------CSSCEE
T ss_pred CCCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHH-HHHHh----cCC-CCeEEEecccccCC--------CCCcee
Confidence 3567999999999999998888865 799999999998 88876 454 35999999987651 357899
Q ss_pred EEEECCCCCCc-c--HHHHHHHHHHcCCcCCCeEEEEEeCCC
Q 021116 234 YMSVTPPYTAV-D--YEVLMAQISKSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 234 lV~~dPPy~~~-~--~~~~l~~L~~~~lLkpgG~ivv~~~~~ 272 (317)
+|+++-..... . ....++.+. ++|+|||++++.....
T Consensus 110 ~v~~~~~l~~~~~~~~~~~l~~~~--~~L~pgG~l~~~~~~~ 149 (218)
T 3ou2_A 110 AVFFAHWLAHVPDDRFEAFWESVR--SAVAPGGVVEFVDVTD 149 (218)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHH--HHEEEEEEEEEEEECC
T ss_pred EEEEechhhcCCHHHHHHHHHHHH--HHcCCCeEEEEEeCCC
Confidence 99997543221 2 255566554 5899999998876543
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.21 E-value=1.3e-10 Score=103.26 Aligned_cols=104 Identities=13% Similarity=0.051 Sum_probs=79.5
Q ss_pred CCCCeEEEECCCcchHHHHHHHc-CC------CEEEEEeCCHHHHHHHHHHhHHHhCC----CCceEEEEecHHHHHHHH
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISR-GC------SEVHFVEMDPWVVSNVLIPNLEWTGF----LDVSSIHTVRVETFLERA 222 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~-Ga------~~V~aVDin~~al~~~ar~N~~~~gl----~~~v~ii~gD~~~~l~~~ 222 (317)
.++.+|||+|||+|.++..++.. +. .+|+++|+++.++ +.|++|++.++. .++++++.+|+.+.+.
T Consensus 83 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~-~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-- 159 (227)
T 1r18_A 83 KPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELV-RRSKANLNTDDRSMLDSGQLLIVEGDGRKGYP-- 159 (227)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHH-HHHHHHHHHHHHHHHHHTSEEEEESCGGGCCG--
T ss_pred CCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHH-HHHHHHHHhcCccccCCCceEEEECCcccCCC--
Confidence 35789999999999999987763 32 4899999999999 999999988761 2358999999876321
Q ss_pred hhhcCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCCC
Q 021116 223 EQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 223 ~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~ 272 (317)
...+||+|+++.+... . .+.+. +.|+|||++++.....
T Consensus 160 -----~~~~fD~I~~~~~~~~-~----~~~~~--~~LkpgG~lvi~~~~~ 197 (227)
T 1r18_A 160 -----PNAPYNAIHVGAAAPD-T----PTELI--NQLASGGRLIVPVGPD 197 (227)
T ss_dssp -----GGCSEEEEEECSCBSS-C----CHHHH--HTEEEEEEEEEEESCS
T ss_pred -----cCCCccEEEECCchHH-H----HHHHH--HHhcCCCEEEEEEecC
Confidence 1267999999987543 1 23333 3799999999988753
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.21 E-value=5.1e-11 Score=108.55 Aligned_cols=126 Identities=10% Similarity=0.007 Sum_probs=91.1
Q ss_pred CCCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHhHHHhCCCC
Q 021116 129 VRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLD 206 (317)
Q Consensus 129 ~rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~-G-a~~V~aVDin~~al~~~ar~N~~~~gl~~ 206 (317)
..|..+.++.++.+-+.... ..+|.+|||+|||+|.++..++.. | ..+|+++|++++++ +.+++|++..+
T Consensus 55 w~p~rsklaa~i~~gl~~l~----ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~-~~l~~~a~~~~--- 126 (233)
T 4df3_A 55 WNAYRSKLAAALLKGLIELP----VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVM-RDLLTVVRDRR--- 126 (233)
T ss_dssp CCTTTCHHHHHHHTTCSCCC----CCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHH-HHHHHHSTTCT---
T ss_pred ECCCchHHHHHHHhchhhcC----CCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHH-HHHHHhhHhhc---
Confidence 35666677766655443211 147899999999999999987764 4 35899999999999 99998876543
Q ss_pred ceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 207 VSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 207 ~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
++..+.+|+.+... .+...+.+|+||+|.++.. +.+..+..+. +.|||||++++..
T Consensus 127 ni~~V~~d~~~p~~----~~~~~~~vDvVf~d~~~~~-~~~~~l~~~~--r~LKpGG~lvI~i 182 (233)
T 4df3_A 127 NIFPILGDARFPEK----YRHLVEGVDGLYADVAQPE-QAAIVVRNAR--FFLRDGGYMLMAI 182 (233)
T ss_dssp TEEEEESCTTCGGG----GTTTCCCEEEEEECCCCTT-HHHHHHHHHH--HHEEEEEEEEEEE
T ss_pred CeeEEEEeccCccc----cccccceEEEEEEeccCCh-hHHHHHHHHH--HhccCCCEEEEEE
Confidence 48888888765422 1223578999999987653 4445555543 4799999999864
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.21 E-value=5.6e-11 Score=103.75 Aligned_cols=99 Identities=14% Similarity=0.168 Sum_probs=77.8
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccE
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDl 234 (317)
++.+|||+|||+|.++..++..|. +|+++|+++.++ +.+++++ + ++++.+|+.+.. ..++||+
T Consensus 43 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~-~~a~~~~---~----~~~~~~d~~~~~--------~~~~fD~ 105 (211)
T 3e23_A 43 AGAKILELGCGAGYQAEAMLAAGF-DVDATDGSPELA-AEASRRL---G----RPVRTMLFHQLD--------AIDAYDA 105 (211)
T ss_dssp TTCEEEESSCTTSHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHH---T----SCCEECCGGGCC--------CCSCEEE
T ss_pred CCCcEEEECCCCCHHHHHHHHcCC-eEEEECCCHHHH-HHHHHhc---C----CceEEeeeccCC--------CCCcEEE
Confidence 578999999999999999888876 799999999999 9999887 2 456788887642 3578999
Q ss_pred EEECCCCCCc---cHHHHHHHHHHcCCcCCCeEEEEEeCCC
Q 021116 235 MSVTPPYTAV---DYEVLMAQISKSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 235 V~~dPPy~~~---~~~~~l~~L~~~~lLkpgG~ivv~~~~~ 272 (317)
|++...+... .....++.+. ++|+|||++++.....
T Consensus 106 v~~~~~l~~~~~~~~~~~l~~~~--~~LkpgG~l~~~~~~~ 144 (211)
T 3e23_A 106 VWAHACLLHVPRDELADVLKLIW--RALKPGGLFYASYKSG 144 (211)
T ss_dssp EEECSCGGGSCHHHHHHHHHHHH--HHEEEEEEEEEEEECC
T ss_pred EEecCchhhcCHHHHHHHHHHHH--HhcCCCcEEEEEEcCC
Confidence 9998654322 3445566554 5899999999986644
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.21 E-value=4.4e-11 Score=107.18 Aligned_cols=103 Identities=14% Similarity=0.161 Sum_probs=80.3
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
.++.+|||+|||+|.++..++..+. +|+++|+++.++ +.+++|+ ..+ ..+++++.+|+.++ +..+++||
T Consensus 38 ~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~-~~a~~~~-~~~-~~~~~~~~~d~~~~-------~~~~~~fD 106 (263)
T 2yqz_A 38 GEEPVFLELGVGTGRIALPLIARGY-RYIALDADAAML-EVFRQKI-AGV-DRKVQVVQADARAI-------PLPDESVH 106 (263)
T ss_dssp SSCCEEEEETCTTSTTHHHHHTTTC-EEEEEESCHHHH-HHHHHHT-TTS-CTTEEEEESCTTSC-------CSCTTCEE
T ss_pred CCCCEEEEeCCcCCHHHHHHHHCCC-EEEEEECCHHHH-HHHHHHh-hcc-CCceEEEEcccccC-------CCCCCCee
Confidence 3578999999999999998888764 799999999999 9999988 323 34699999998653 12356899
Q ss_pred EEEECCCCCC-ccHHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 234 YMSVTPPYTA-VDYEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 234 lV~~dPPy~~-~~~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
+|++.-.++. .+....++.+. ++|+|||++++..
T Consensus 107 ~v~~~~~l~~~~~~~~~l~~~~--~~L~pgG~l~~~~ 141 (263)
T 2yqz_A 107 GVIVVHLWHLVPDWPKVLAEAI--RVLKPGGALLEGW 141 (263)
T ss_dssp EEEEESCGGGCTTHHHHHHHHH--HHEEEEEEEEEEE
T ss_pred EEEECCchhhcCCHHHHHHHHH--HHCCCCcEEEEEe
Confidence 9999755432 25566777665 4899999998873
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=4.1e-11 Score=109.68 Aligned_cols=103 Identities=17% Similarity=0.058 Sum_probs=76.2
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHH----------hC------CCCceEEEEecHHHH
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEW----------TG------FLDVSSIHTVRVETF 218 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~----------~g------l~~~v~ii~gD~~~~ 218 (317)
++.+|||+|||+|..+..+++.|. +|++||+++.++ +.|+++... .+ ...+++++++|+.++
T Consensus 68 ~~~~vLD~GCG~G~~~~~La~~G~-~V~gvD~S~~~i-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l 145 (252)
T 2gb4_A 68 SGLRVFFPLCGKAIEMKWFADRGH-TVVGVEISEIGI-REFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDL 145 (252)
T ss_dssp CSCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHH-HHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTG
T ss_pred CCCeEEEeCCCCcHHHHHHHHCCC-eEEEEECCHHHH-HHHHHhcccccccccccccccccccccCCCceEEEECccccC
Confidence 578999999999999999999887 799999999999 999765431 00 124599999999875
Q ss_pred HHHHhhhcCCCCCccEEEECCCCCC---ccHHHHHHHHHHcCCcCCCeEEEE
Q 021116 219 LERAEQFVGKDGPFDYMSVTPPYTA---VDYEVLMAQISKSALVGKDSFIVV 267 (317)
Q Consensus 219 l~~~~~~~~~~~~fDlV~~dPPy~~---~~~~~~l~~L~~~~lLkpgG~ivv 267 (317)
... ..++||+|+....+.. ......++.+. ++|+|||++++
T Consensus 146 ~~~------~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~--~~LkpGG~l~l 189 (252)
T 2gb4_A 146 PRA------NIGKFDRIWDRGALVAINPGDHDRYADIIL--SLLRKEFQYLV 189 (252)
T ss_dssp GGG------CCCCEEEEEESSSTTTSCGGGHHHHHHHHH--HTEEEEEEEEE
T ss_pred Ccc------cCCCEEEEEEhhhhhhCCHHHHHHHHHHHH--HHcCCCeEEEE
Confidence 311 1268999997654432 12345566665 58999999864
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.3e-10 Score=103.03 Aligned_cols=101 Identities=11% Similarity=0.071 Sum_probs=80.4
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccE
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDl 234 (317)
++.+|||+|||+|.++..++..|+ +|+++|+++.++ +.++++.. ..+++++.+|+.+.. ..+++||+
T Consensus 53 ~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~-~~a~~~~~----~~~~~~~~~d~~~~~-------~~~~~fD~ 119 (242)
T 3l8d_A 53 KEAEVLDVGCGDGYGTYKLSRTGY-KAVGVDISEVMI-QKGKERGE----GPDLSFIKGDLSSLP-------FENEQFEA 119 (242)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHH-HHHHTTTC----BTTEEEEECBTTBCS-------SCTTCEEE
T ss_pred CCCeEEEEcCCCCHHHHHHHHcCC-eEEEEECCHHHH-HHHHhhcc----cCCceEEEcchhcCC-------CCCCCccE
Confidence 578999999999999999888876 799999999999 99988752 245899999987642 23578999
Q ss_pred EEECCCCC-CccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 235 MSVTPPYT-AVDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 235 V~~dPPy~-~~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
|++...+. ..+....++.+. ++|+|||++++...
T Consensus 120 v~~~~~l~~~~~~~~~l~~~~--~~L~pgG~l~i~~~ 154 (242)
T 3l8d_A 120 IMAINSLEWTEEPLRALNEIK--RVLKSDGYACIAIL 154 (242)
T ss_dssp EEEESCTTSSSCHHHHHHHHH--HHEEEEEEEEEEEE
T ss_pred EEEcChHhhccCHHHHHHHHH--HHhCCCeEEEEEEc
Confidence 99865443 345667777765 48999999998864
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.20 E-value=2.1e-11 Score=108.33 Aligned_cols=116 Identities=11% Similarity=0.083 Sum_probs=79.3
Q ss_pred CChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHhHHHhCCCCce
Q 021116 131 PMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVS 208 (317)
Q Consensus 131 pt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~--Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v 208 (317)
|..+.+...++..+. ...+|||+|||+|.+++..+.. ++ +|+++|+|+.++ +.+++|++.+|..+++
T Consensus 34 p~ld~fY~~~~~~l~---------~~~~VLDlGCG~GplAl~l~~~~p~a-~~~A~Di~~~~l-eiar~~~~~~g~~~~v 102 (200)
T 3fzg_A 34 ATLNDFYTYVFGNIK---------HVSSILDFGCGFNPLALYQWNENEKI-IYHAYDIDRAEI-AFLSSIIGKLKTTIKY 102 (200)
T ss_dssp GGHHHHHHHHHHHSC---------CCSEEEEETCTTHHHHHHHHCSSCCC-EEEEECSCHHHH-HHHHHHHHHSCCSSEE
T ss_pred HhHHHHHHHHHhhcC---------CCCeEEEecCCCCHHHHHHHhcCCCC-EEEEEeCCHHHH-HHHHHHHHhcCCCccE
Confidence 344555555555552 4679999999999999987665 45 899999999999 9999999999998667
Q ss_pred EEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCC-ccHHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 209 SIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTA-VDYEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 209 ~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~-~~~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
++ .|..... ..++||+|++.--++. .+.+..+..+. ..|+|||+++..-
T Consensus 103 ~~--~d~~~~~--------~~~~~DvVLa~k~LHlL~~~~~al~~v~--~~L~pggvfISfp 152 (200)
T 3fzg_A 103 RF--LNKESDV--------YKGTYDVVFLLKMLPVLKQQDVNILDFL--QLFHTQNFVISFP 152 (200)
T ss_dssp EE--ECCHHHH--------TTSEEEEEEEETCHHHHHHTTCCHHHHH--HTCEEEEEEEEEE
T ss_pred EE--ecccccC--------CCCCcChhhHhhHHHhhhhhHHHHHHHH--HHhCCCCEEEEeC
Confidence 66 5654432 2477999998521110 00011112222 3789998877654
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.20 E-value=7.7e-11 Score=108.38 Aligned_cols=105 Identities=12% Similarity=0.081 Sum_probs=83.9
Q ss_pred CCCCeEEEECCCcchHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCC
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGP 231 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~-G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~ 231 (317)
.++.+|||+|||+|.+++.++.. + ..+|+++|+++.++ +.|++++...+. +++++.+|+.++. ..++
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~-~~a~~~~~~~~~--~v~~~~~d~~~~~--------~~~~ 89 (284)
T 3gu3_A 21 TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLL-AEARELFRLLPY--DSEFLEGDATEIE--------LNDK 89 (284)
T ss_dssp CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHH-HHHHHHHHSSSS--EEEEEESCTTTCC--------CSSC
T ss_pred CCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHH-HHHHHHHHhcCC--ceEEEEcchhhcC--------cCCC
Confidence 36789999999999999988775 2 35899999999999 999999887765 5999999988642 1368
Q ss_pred ccEEEECCCCC-CccHHHHHHHHHHcCCcCCCeEEEEEeCC
Q 021116 232 FDYMSVTPPYT-AVDYEVLMAQISKSALVGKDSFIVVEYPL 271 (317)
Q Consensus 232 fDlV~~dPPy~-~~~~~~~l~~L~~~~lLkpgG~ivv~~~~ 271 (317)
||+|+++.... ..+....++.+. ++|+|||++++..+.
T Consensus 90 fD~v~~~~~l~~~~~~~~~l~~~~--~~LkpgG~l~~~~~~ 128 (284)
T 3gu3_A 90 YDIAICHAFLLHMTTPETMLQKMI--HSVKKGGKIICFEPH 128 (284)
T ss_dssp EEEEEEESCGGGCSSHHHHHHHHH--HTEEEEEEEEEEECC
T ss_pred eeEEEECChhhcCCCHHHHHHHHH--HHcCCCCEEEEEecc
Confidence 99999976532 235667777765 489999999987654
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.19 E-value=2.1e-11 Score=108.34 Aligned_cols=109 Identities=13% Similarity=0.106 Sum_probs=79.5
Q ss_pred CCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceE
Q 021116 130 RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSS 209 (317)
Q Consensus 130 rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ 209 (317)
+|.+..+...+...+. .++.+|||+|||+|.+++.++..|+ +|+++|+++.++ +.+++| . .+++
T Consensus 31 ~~~~~~l~~~~~~~~~--------~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~-~~a~~~-----~-~~~~ 94 (226)
T 3m33_A 31 GPDPELTFDLWLSRLL--------TPQTRVLEAGCGHGPDAARFGPQAA-RWAAYDFSPELL-KLARAN-----A-PHAD 94 (226)
T ss_dssp SSCTTHHHHHHHHHHC--------CTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHH-HHHHHH-----C-TTSE
T ss_pred CCCHHHHHHHHHHhcC--------CCCCeEEEeCCCCCHHHHHHHHcCC-EEEEEECCHHHH-HHHHHh-----C-CCce
Confidence 5665655555544332 3578999999999999999888865 799999999999 999988 1 3488
Q ss_pred EEEecHHHHHHHHhhhcCC-CCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEE
Q 021116 210 IHTVRVETFLERAEQFVGK-DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVV 267 (317)
Q Consensus 210 ii~gD~~~~l~~~~~~~~~-~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv 267 (317)
++++|+.+.+ +.. +++||+|++++. ....++.+. ++|+|||+++.
T Consensus 95 ~~~~d~~~~~------~~~~~~~fD~v~~~~~-----~~~~l~~~~--~~LkpgG~l~~ 140 (226)
T 3m33_A 95 VYEWNGKGEL------PAGLGAPFGLIVSRRG-----PTSVILRLP--ELAAPDAHFLY 140 (226)
T ss_dssp EEECCSCSSC------CTTCCCCEEEEEEESC-----CSGGGGGHH--HHEEEEEEEEE
T ss_pred EEEcchhhcc------CCcCCCCEEEEEeCCC-----HHHHHHHHH--HHcCCCcEEEE
Confidence 9999985432 223 468999999742 223344443 37999999993
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.19 E-value=1.6e-10 Score=117.10 Aligned_cols=133 Identities=14% Similarity=0.060 Sum_probs=95.0
Q ss_pred CCCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHc----CCCEEEEEeCCHHHHHHHHHHhHHHhCC
Q 021116 129 VRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR----GCSEVHFVEMDPWVVSNVLIPNLEWTGF 204 (317)
Q Consensus 129 ~rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~----Ga~~V~aVDin~~al~~~ar~N~~~~gl 204 (317)
-..|...+.+.+.+++..... ...+.+|+|+|||||.+.+.++.. +..+++|+|+|+.++ ++|+.|+...|+
T Consensus 198 ~fyTP~~Vv~lmv~ll~~~~~---~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~-~lA~~Nl~l~gi 273 (542)
T 3lkd_A 198 EFYTPQPVAKLMTQIAFLGRE---DKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTY-NLARMNMILHGV 273 (542)
T ss_dssp SCCCCHHHHHHHHHHHHTTCT---TCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHH-HHHHHHHHHTTC
T ss_pred eecccHHHHHHHHHHHhcccC---CCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHH-HHHHHHHHHcCC
Confidence 355667788888888864210 135789999999999999988764 345799999999998 999999999998
Q ss_pred C-CceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCcc--------------HH----------HHHHHHHHcCCc
Q 021116 205 L-DVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVD--------------YE----------VLMAQISKSALV 259 (317)
Q Consensus 205 ~-~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~--------------~~----------~~l~~L~~~~lL 259 (317)
. +++.+.++|..... .. ......||+|++||||.... +. ..+..+. +.|
T Consensus 274 ~~~~~~I~~gDtL~~d--~p--~~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l--~~L 347 (542)
T 3lkd_A 274 PIENQFLHNADTLDED--WP--TQEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGY--YHL 347 (542)
T ss_dssp CGGGEEEEESCTTTSC--SC--CSSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHH--HTB
T ss_pred CcCccceEecceeccc--cc--ccccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHH--HHh
Confidence 5 45889999976430 00 01246799999999996321 10 1223222 489
Q ss_pred C-CCeEEEEEeCC
Q 021116 260 G-KDSFIVVEYPL 271 (317)
Q Consensus 260 k-pgG~ivv~~~~ 271 (317)
+ +||++.+..+.
T Consensus 348 k~~gGr~a~VlP~ 360 (542)
T 3lkd_A 348 KQDNGVMAIVLPH 360 (542)
T ss_dssp CTTTCEEEEEEET
T ss_pred CCCceeEEEEecc
Confidence 9 99998776653
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.19 E-value=5e-11 Score=105.88 Aligned_cols=105 Identities=11% Similarity=-0.042 Sum_probs=74.2
Q ss_pred CCCCeEEEECCCcchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF 232 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~f 232 (317)
.++.+|||+|||+|.++..++... ..+|+++|+++.++ +.+.++++.. +++.++.+|+.+..... + ..++|
T Consensus 56 ~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l-~~~~~~a~~~---~~v~~~~~d~~~~~~~~---~-~~~~f 127 (210)
T 1nt2_A 56 RGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPF-EKLLELVRER---NNIIPLLFDASKPWKYS---G-IVEKV 127 (210)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHH-HHHHHHHHHC---SSEEEECSCTTCGGGTT---T-TCCCE
T ss_pred CCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHH-HHHHHHHhcC---CCeEEEEcCCCCchhhc---c-cccce
Confidence 367899999999999998877653 35899999999998 7777766543 34788888886531100 1 12689
Q ss_pred cEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 233 DYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 233 DlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
|+|++|.+.. ......++.+. ++|+|||++++..
T Consensus 128 D~V~~~~~~~-~~~~~~l~~~~--r~LkpgG~l~i~~ 161 (210)
T 1nt2_A 128 DLIYQDIAQK-NQIEILKANAE--FFLKEKGEVVIMV 161 (210)
T ss_dssp EEEEECCCST-THHHHHHHHHH--HHEEEEEEEEEEE
T ss_pred eEEEEeccCh-hHHHHHHHHHH--HHhCCCCEEEEEE
Confidence 9999995432 12233345544 5899999999874
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.19 E-value=7.7e-11 Score=106.80 Aligned_cols=109 Identities=12% Similarity=0.029 Sum_probs=80.9
Q ss_pred CCCCeEEEECCCcchHHHHHHHc-CC-CEEEEEeCCHH------HHHHHHHHhHHHhCCCCceEEEEec-HHHHHHHHhh
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISR-GC-SEVHFVEMDPW------VVSNVLIPNLEWTGFLDVSSIHTVR-VETFLERAEQ 224 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~-Ga-~~V~aVDin~~------al~~~ar~N~~~~gl~~~v~ii~gD-~~~~l~~~~~ 224 (317)
.++.+|||+|||+|.+++.++.. |. .+|+++|+++. ++ +.|++|++..++.++++++.+| .... .
T Consensus 42 ~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~ 115 (275)
T 3bkx_A 42 KPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTL-GQAWNHLLAGPLGDRLTVHFNTNLSDD-----L 115 (275)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCH-HHHHHHHHTSTTGGGEEEECSCCTTTC-----C
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHH-HHHHHHHHhcCCCCceEEEECChhhhc-----c
Confidence 46789999999999999988876 43 58999999997 88 9999999988887779999998 2211 0
Q ss_pred hcCCCCCccEEEECCCCC-CccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 225 FVGKDGPFDYMSVTPPYT-AVDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 225 ~~~~~~~fDlV~~dPPy~-~~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
++...++||+|+++.++. ..+...+++.+. .++++||++++...
T Consensus 116 ~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~--~l~~~gG~l~~~~~ 160 (275)
T 3bkx_A 116 GPIADQHFDRVVLAHSLWYFASANALALLFK--NMAAVCDHVDVAEW 160 (275)
T ss_dssp GGGTTCCCSEEEEESCGGGSSCHHHHHHHHH--HHTTTCSEEEEEEE
T ss_pred CCCCCCCEEEEEEccchhhCCCHHHHHHHHH--HHhCCCCEEEEEEe
Confidence 112347899999987653 234444444443 35667999988653
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.9e-11 Score=107.43 Aligned_cols=105 Identities=12% Similarity=0.079 Sum_probs=75.6
Q ss_pred CCCCeEEEECCCcchHHHHHHHcC-CCEEEEEeCCHHHHHHH----HHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCC
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNV----LIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~G-a~~V~aVDin~~al~~~----ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~ 228 (317)
.++.+|||+|||+|.+++.++..+ ..+|+++|+++.++ +. ++++.+..++. +++++++|+.+.. ..
T Consensus 26 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l-~~~~~~a~~~~~~~~~~-~v~~~~~d~~~l~-------~~ 96 (218)
T 3mq2_A 26 QYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRM-EKISAKAAAKPAKGGLP-NLLYLWATAERLP-------PL 96 (218)
T ss_dssp TSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGG-HHHHHHHTSCGGGTCCT-TEEEEECCSTTCC-------SC
T ss_pred cCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHH-HHHHHHHHHhhhhcCCC-ceEEEecchhhCC-------CC
Confidence 367899999999999999988874 45899999999977 64 34455556664 5999999987631 22
Q ss_pred CCCccEEEECCCCCCc------cHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 229 DGPFDYMSVTPPYTAV------DYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 229 ~~~fDlV~~dPPy~~~------~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
.+. |.|++..++... +....++.+. ++|+|||++++...
T Consensus 97 ~~~-d~v~~~~~~~~~~~~~~~~~~~~l~~~~--~~LkpgG~l~~~~~ 141 (218)
T 3mq2_A 97 SGV-GELHVLMPWGSLLRGVLGSSPEMLRGMA--AVCRPGASFLVALN 141 (218)
T ss_dssp CCE-EEEEEESCCHHHHHHHHTSSSHHHHHHH--HTEEEEEEEEEEEE
T ss_pred CCC-CEEEEEccchhhhhhhhccHHHHHHHHH--HHcCCCcEEEEEec
Confidence 344 888877654321 1144555554 58999999999754
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=6.9e-11 Score=111.41 Aligned_cols=93 Identities=13% Similarity=0.051 Sum_probs=72.9
Q ss_pred HHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHH
Q 021116 138 GAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVE 216 (317)
Q Consensus 138 ~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~ 216 (317)
+.+.+.+.. .++.+|||+|||+|..+++++++. ..+|+++|+|+.++ +.|++|++.+| ++++++++|+.
T Consensus 16 ~e~l~~L~~-------~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al-~~A~~~~~~~g--~~v~~v~~d~~ 85 (301)
T 1m6y_A 16 REVIEFLKP-------EDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVL-RIAEEKLKEFS--DRVSLFKVSYR 85 (301)
T ss_dssp HHHHHHHCC-------CTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHH-HHHHHHTGGGT--TTEEEEECCGG
T ss_pred HHHHHhcCC-------CCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHH-HHHHHHHHhcC--CcEEEEECCHH
Confidence 344466643 357899999999999999988763 46899999999999 99999999887 56999999987
Q ss_pred HHHHHHhhhcCCCCCccEEEECCCCC
Q 021116 217 TFLERAEQFVGKDGPFDYMSVTPPYT 242 (317)
Q Consensus 217 ~~l~~~~~~~~~~~~fDlV~~dPPy~ 242 (317)
++...+..+ ...+||.|++|||+.
T Consensus 86 ~l~~~l~~~--g~~~~D~Vl~D~gvS 109 (301)
T 1m6y_A 86 EADFLLKTL--GIEKVDGILMDLGVS 109 (301)
T ss_dssp GHHHHHHHT--TCSCEEEEEEECSCC
T ss_pred HHHHHHHhc--CCCCCCEEEEcCccc
Confidence 754322110 114799999999975
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.17 E-value=5.3e-11 Score=109.56 Aligned_cols=117 Identities=14% Similarity=0.166 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEe
Q 021116 134 EVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTV 213 (317)
Q Consensus 134 ~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~g 213 (317)
..+.+.+.+.+.. .++.+|||+|||+|.++..++.++ .+|++||+|+.++ +.+++|++. .++++++++
T Consensus 15 ~~i~~~iv~~~~~-------~~~~~VLEIG~G~G~lt~~La~~~-~~V~avEid~~~~-~~~~~~~~~---~~~v~~i~~ 82 (255)
T 3tqs_A 15 SFVLQKIVSAIHP-------QKTDTLVEIGPGRGALTDYLLTEC-DNLALVEIDRDLV-AFLQKKYNQ---QKNITIYQN 82 (255)
T ss_dssp HHHHHHHHHHHCC-------CTTCEEEEECCTTTTTHHHHTTTS-SEEEEEECCHHHH-HHHHHHHTT---CTTEEEEES
T ss_pred HHHHHHHHHhcCC-------CCcCEEEEEcccccHHHHHHHHhC-CEEEEEECCHHHH-HHHHHHHhh---CCCcEEEEc
Confidence 4466667676654 367899999999999999988887 5899999999999 999999865 246999999
Q ss_pred cHHHHH-HHHhhhcCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 214 RVETFL-ERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 214 D~~~~l-~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
|+.++. ... ...++|| |+.|+||.. -..++..+.+....-...++++..
T Consensus 83 D~~~~~~~~~----~~~~~~~-vv~NlPY~i--s~~il~~ll~~~~~~~~~~lm~Qk 132 (255)
T 3tqs_A 83 DALQFDFSSV----KTDKPLR-VVGNLPYNI--STPLLFHLFSQIHCIEDMHFMLQK 132 (255)
T ss_dssp CTTTCCGGGS----CCSSCEE-EEEECCHHH--HHHHHHHHHHTGGGEEEEEEEEEH
T ss_pred chHhCCHHHh----ccCCCeE-EEecCCccc--CHHHHHHHHhCCCChheEEEEEeH
Confidence 998752 111 0124688 999999953 223444333221122345555554
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.17 E-value=1.1e-10 Score=112.36 Aligned_cols=112 Identities=18% Similarity=0.058 Sum_probs=84.5
Q ss_pred CCCCeEEEECCCcchHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHhHHHh-----C-CC-CceEEEEecHHHHHHHHhh
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWT-----G-FL-DVSSIHTVRVETFLERAEQ 224 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~--Ga~~V~aVDin~~al~~~ar~N~~~~-----g-l~-~~v~ii~gD~~~~l~~~~~ 224 (317)
.++.+|||+|||+|.+++.++.. ...+|+++|+++.++ +.|++|++.+ | +. .+++++++|+.+.... ..
T Consensus 82 ~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l-~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~-~~ 159 (383)
T 4fsd_A 82 LEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQL-EVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATA-EP 159 (383)
T ss_dssp GTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHH-HHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGC-BS
T ss_pred CCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhc-cc
Confidence 36789999999999999987764 234899999999999 9999998876 4 32 4699999998764210 00
Q ss_pred hcCCCCCccEEEECCCCCC-ccHHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 225 FVGKDGPFDYMSVTPPYTA-VDYEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 225 ~~~~~~~fDlV~~dPPy~~-~~~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
.+..+++||+|+++..+.. .+....++.+. ++|+|||++++..
T Consensus 160 ~~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~--r~LkpgG~l~i~~ 203 (383)
T 4fsd_A 160 EGVPDSSVDIVISNCVCNLSTNKLALFKEIH--RVLRDGGELYFSD 203 (383)
T ss_dssp CCCCTTCEEEEEEESCGGGCSCHHHHHHHHH--HHEEEEEEEEEEE
T ss_pred CCCCCCCEEEEEEccchhcCCCHHHHHHHHH--HHcCCCCEEEEEE
Confidence 0223578999999876543 35667777765 4899999999874
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.17 E-value=7.1e-12 Score=114.38 Aligned_cols=111 Identities=12% Similarity=0.063 Sum_probs=76.6
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhC--C--------------------------C
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTG--F--------------------------L 205 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~g--l--------------------------~ 205 (317)
.++.+|||+|||+|.+.+.++..|+.+|+++|+++.++ +.|+++++... + .
T Consensus 54 ~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l-~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~ 132 (263)
T 2a14_A 54 LQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNR-EELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR 132 (263)
T ss_dssp CCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHH-HHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred CCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHH-HHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHH
Confidence 46789999999999998877788877899999999999 99999876532 1 0
Q ss_pred CceE-EEEecHHHHHHHHhhhcCCCCCccEEEECCCCC-----CccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 206 DVSS-IHTVRVETFLERAEQFVGKDGPFDYMSVTPPYT-----AVDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 206 ~~v~-ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~-----~~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
.+++ ++++|+.+..... +...++||+|++.--.+ ..++...+..+. ++|+|||++++...
T Consensus 133 ~~i~~~~~~D~~~~~~~~---~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~--r~LKPGG~li~~~~ 198 (263)
T 2a14_A 133 AAVKRVLKCDVHLGNPLA---PAVLPLADCVLTLLAMECACCSLDAYRAALCNLA--SLLKPGGHLVTTVT 198 (263)
T ss_dssp HHEEEEEECCTTSSSTTT---TCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHH--TTEEEEEEEEEEEE
T ss_pred hhhheEEeccccCCCCCC---ccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHH--HHcCCCcEEEEEEe
Confidence 1233 7888876531100 01136899999962111 112334444443 79999999998853
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.4e-10 Score=98.53 Aligned_cols=102 Identities=18% Similarity=0.209 Sum_probs=78.3
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccE
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDl 234 (317)
++.+|||+|||+|.++..++..+. +|+++|+++.++ +.+++|+. +++++++|+.+.. ...++||+
T Consensus 46 ~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~~~~~~-~~a~~~~~------~~~~~~~d~~~~~-------~~~~~~D~ 110 (195)
T 3cgg_A 46 RGAKILDAGCGQGRIGGYLSKQGH-DVLGTDLDPILI-DYAKQDFP------EARWVVGDLSVDQ-------ISETDFDL 110 (195)
T ss_dssp TTCEEEEETCTTTHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHCT------TSEEEECCTTTSC-------CCCCCEEE
T ss_pred CCCeEEEECCCCCHHHHHHHHCCC-cEEEEcCCHHHH-HHHHHhCC------CCcEEEcccccCC-------CCCCceeE
Confidence 578999999999999998888865 799999999998 99988763 3788999987631 23468999
Q ss_pred EEECCCCC-Cc---cHHHHHHHHHHcCCcCCCeEEEEEeCCCC
Q 021116 235 MSVTPPYT-AV---DYEVLMAQISKSALVGKDSFIVVEYPLRT 273 (317)
Q Consensus 235 V~~dPPy~-~~---~~~~~l~~L~~~~lLkpgG~ivv~~~~~~ 273 (317)
|+++++.. .. .....++.+. ++|+|||++++......
T Consensus 111 i~~~~~~~~~~~~~~~~~~l~~~~--~~l~~~G~l~~~~~~~~ 151 (195)
T 3cgg_A 111 IVSAGNVMGFLAEDGREPALANIH--RALGADGRAVIGFGAGR 151 (195)
T ss_dssp EEECCCCGGGSCHHHHHHHHHHHH--HHEEEEEEEEEEEETTS
T ss_pred EEECCcHHhhcChHHHHHHHHHHH--HHhCCCCEEEEEeCCCC
Confidence 99996532 11 2345555554 48999999999876543
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=2.5e-10 Score=106.21 Aligned_cols=114 Identities=13% Similarity=0.077 Sum_probs=81.5
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhC------CCCceEEEEecHHHHHHHHhhhcCC
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTG------FLDVSSIHTVRVETFLERAEQFVGK 228 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~g------l~~~v~ii~gD~~~~l~~~~~~~~~ 228 (317)
++.+|||+|||+|.++..++..+..+|+++|+++.++ +.|+++....+ ...+++++++|+.+.... ..++..
T Consensus 34 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l-~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~-~~~~~~ 111 (313)
T 3bgv_A 34 RDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSV-KQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLI-DKFRDP 111 (313)
T ss_dssp -CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHH-HHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCST-TTCSST
T ss_pred CCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHH-HHHHHHHHHhhhcccccccceEEEEEecccccchh-hhcccC
Confidence 5789999999999999988877667899999999999 99999887652 224589999998764100 000111
Q ss_pred CCCccEEEECCCCCCc--c---HHHHHHHHHHcCCcCCCeEEEEEeCCC
Q 021116 229 DGPFDYMSVTPPYTAV--D---YEVLMAQISKSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 229 ~~~fDlV~~dPPy~~~--~---~~~~l~~L~~~~lLkpgG~ivv~~~~~ 272 (317)
.++||+|++.-..+.. + ....++.+. ++|+|||++++.....
T Consensus 112 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~--~~LkpgG~li~~~~~~ 158 (313)
T 3bgv_A 112 QMCFDICSCQFVCHYSFESYEQADMMLRNAC--ERLSPGGYFIGTTPNS 158 (313)
T ss_dssp TCCEEEEEEETCGGGGGGSHHHHHHHHHHHH--TTEEEEEEEEEEEECH
T ss_pred CCCEEEEEEecchhhccCCHHHHHHHHHHHH--HHhCCCcEEEEecCCh
Confidence 3489999987544321 2 234444443 7999999999987643
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.15 E-value=7e-11 Score=105.82 Aligned_cols=100 Identities=15% Similarity=0.157 Sum_probs=78.4
Q ss_pred CCCCeEEEECCCcchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF 232 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~-Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~f 232 (317)
.++.+|||+|||+|.++..++.. ...+|+++|+++.++ +.++++. .+++++.+|+.++. .+++|
T Consensus 32 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~-~~a~~~~------~~~~~~~~d~~~~~--------~~~~f 96 (259)
T 2p35_A 32 ERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDML-EKAADRL------PNTNFGKADLATWK--------PAQKA 96 (259)
T ss_dssp SCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHH-HHHHHHS------TTSEEEECCTTTCC--------CSSCE
T ss_pred CCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHhC------CCcEEEECChhhcC--------ccCCc
Confidence 35789999999999999988776 134699999999999 9998871 34789999987642 24689
Q ss_pred cEEEECCCCCC-ccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 233 DYMSVTPPYTA-VDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 233 DlV~~dPPy~~-~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
|+|+++..+.. .+....++.+. ++|+|||++++...
T Consensus 97 D~v~~~~~l~~~~~~~~~l~~~~--~~L~pgG~l~~~~~ 133 (259)
T 2p35_A 97 DLLYANAVFQWVPDHLAVLSQLM--DQLESGGVLAVQMP 133 (259)
T ss_dssp EEEEEESCGGGSTTHHHHHHHHG--GGEEEEEEEEEEEE
T ss_pred CEEEEeCchhhCCCHHHHHHHHH--HhcCCCeEEEEEeC
Confidence 99999765432 35566677665 58999999998864
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.1e-10 Score=106.64 Aligned_cols=101 Identities=19% Similarity=0.149 Sum_probs=79.4
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
.++.+|||+|||+|.++..++..+. +|+++|+++.++ +.++++. .+++++.+|+.++. ..++||
T Consensus 56 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~-~~a~~~~------~~~~~~~~d~~~~~--------~~~~fD 119 (279)
T 3ccf_A 56 QPGEFILDLGCGTGQLTEKIAQSGA-EVLGTDNAATMI-EKARQNY------PHLHFDVADARNFR--------VDKPLD 119 (279)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHC------TTSCEEECCTTTCC--------CSSCEE
T ss_pred CCCCEEEEecCCCCHHHHHHHhCCC-eEEEEECCHHHH-HHHHhhC------CCCEEEECChhhCC--------cCCCcC
Confidence 3578999999999999998888654 799999999999 9998875 24778999987642 136899
Q ss_pred EEEECCCCCC-ccHHHHHHHHHHcCCcCCCeEEEEEeCCC
Q 021116 234 YMSVTPPYTA-VDYEVLMAQISKSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 234 lV~~dPPy~~-~~~~~~l~~L~~~~lLkpgG~ivv~~~~~ 272 (317)
+|++...+.. .+....++.+. ++|+|||++++.....
T Consensus 120 ~v~~~~~l~~~~d~~~~l~~~~--~~LkpgG~l~~~~~~~ 157 (279)
T 3ccf_A 120 AVFSNAMLHWVKEPEAAIASIH--QALKSGGRFVAEFGGK 157 (279)
T ss_dssp EEEEESCGGGCSCHHHHHHHHH--HHEEEEEEEEEEEECT
T ss_pred EEEEcchhhhCcCHHHHHHHHH--HhcCCCcEEEEEecCC
Confidence 9999765432 45667777765 4899999999877643
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=2.9e-11 Score=109.30 Aligned_cols=99 Identities=12% Similarity=0.109 Sum_probs=74.3
Q ss_pred CCCeEEEECCCcchHHHHHHHc----C-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHH--HHHHhhhcC
Q 021116 155 RPGRWLDLYSGTGSVGIEAISR----G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF--LERAEQFVG 227 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~----G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~--l~~~~~~~~ 227 (317)
++.+|||+|||+|..++.+++. + ..+|++||+++.++ +.|+ + +.++++++++|+.+. +...
T Consensus 81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l-~~a~-~-----~~~~v~~~~gD~~~~~~l~~~----- 148 (236)
T 2bm8_A 81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRC-QIPA-S-----DMENITLHQGDCSDLTTFEHL----- 148 (236)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTC-CCCG-G-----GCTTEEEEECCSSCSGGGGGG-----
T ss_pred CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHH-HHHh-c-----cCCceEEEECcchhHHHHHhh-----
Confidence 4679999999999999987765 2 45899999999998 8776 2 235699999998764 2211
Q ss_pred CCCCccEEEECCCCCCccHHHHHHHHHHcC-CcCCCeEEEEEe
Q 021116 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSA-LVGKDSFIVVEY 269 (317)
Q Consensus 228 ~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~-lLkpgG~ivv~~ 269 (317)
...+||+|++|... ..+...+..+. + .|+|||+++++.
T Consensus 149 ~~~~fD~I~~d~~~--~~~~~~l~~~~--r~~LkpGG~lv~~d 187 (236)
T 2bm8_A 149 REMAHPLIFIDNAH--ANTFNIMKWAV--DHLLEEGDYFIIED 187 (236)
T ss_dssp SSSCSSEEEEESSC--SSHHHHHHHHH--HHTCCTTCEEEECS
T ss_pred ccCCCCEEEECCch--HhHHHHHHHHH--HhhCCCCCEEEEEe
Confidence 12369999998753 35666666553 3 899999999963
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.3e-10 Score=109.01 Aligned_cols=112 Identities=11% Similarity=-0.019 Sum_probs=77.4
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCC-----ceEEEEecH------HHHHHHHh
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLD-----VSSIHTVRV------ETFLERAE 223 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~-----~v~ii~gD~------~~~l~~~~ 223 (317)
.+.+|||+|||+|......+..+..+|+|+|+++.++ +.|++.....+... +++++..|+ .+...
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l-~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~--- 123 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAI-ARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVRE--- 123 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHH-HHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHT---
T ss_pred CCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHH-HHHHHHHHhccccccccccccchhhhhcccchhhhhhhc---
Confidence 4789999999999866666666666899999999999 99999887665421 256777776 22211
Q ss_pred hhcCCCCCccEEEECCCCC----CccHHHHHHHHHHcCCcCCCeEEEEEeCCCCC
Q 021116 224 QFVGKDGPFDYMSVTPPYT----AVDYEVLMAQISKSALVGKDSFIVVEYPLRTD 274 (317)
Q Consensus 224 ~~~~~~~~fDlV~~dPPy~----~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~~~ 274 (317)
+...++||+|++.--.+ .......++.+. ++|+|||++++.......
T Consensus 124 --~~~~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~--r~LkpGG~~i~~~~~~~~ 174 (302)
T 2vdw_A 124 --VFYFGKFNIIDWQFAIHYSFHPRHYATVMNNLS--ELTASGGKVLITTMDGDK 174 (302)
T ss_dssp --TCCSSCEEEEEEESCGGGTCSTTTHHHHHHHHH--HHEEEEEEEEEEEECHHH
T ss_pred --cccCCCeeEEEECchHHHhCCHHHHHHHHHHHH--HHcCCCCEEEEEeCCHHH
Confidence 11246899998742211 113355566655 589999999998875433
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.14 E-value=8.5e-11 Score=106.66 Aligned_cols=115 Identities=17% Similarity=0.076 Sum_probs=85.8
Q ss_pred CCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceE
Q 021116 130 RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSS 209 (317)
Q Consensus 130 rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ 209 (317)
++....+.+.+.+.+.. .++.+|||+|||+|.+++.++..++ +|+++|+++.++ +.++++. +++
T Consensus 16 ~~~~~~~~~~l~~~~~~-------~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~-~~a~~~~-------~~~ 79 (261)
T 3ege_A 16 RVPDIRIVNAIINLLNL-------PKGSVIADIGAGTGGYSVALANQGL-FVYAVEPSIVMR-QQAVVHP-------QVE 79 (261)
T ss_dssp BCCCHHHHHHHHHHHCC-------CTTCEEEEETCTTSHHHHHHHTTTC-EEEEECSCHHHH-HSSCCCT-------TEE
T ss_pred ccccHHHHHHHHHHhCC-------CCCCEEEEEcCcccHHHHHHHhCCC-EEEEEeCCHHHH-HHHHhcc-------CCE
Confidence 44445677777777643 3678999999999999998887664 799999999998 8776654 488
Q ss_pred EEEecHHHHHHHHhhhcCCCCCccEEEECCCC-CCccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 210 IHTVRVETFLERAEQFVGKDGPFDYMSVTPPY-TAVDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 210 ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy-~~~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
++.+|+.++ +..+++||+|++.... +..+....++.+. ++|+ ||++++...
T Consensus 80 ~~~~d~~~~-------~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~--~~Lk-gG~~~~~~~ 131 (261)
T 3ege_A 80 WFTGYAENL-------ALPDKSVDGVISILAIHHFSHLEKSFQEMQ--RIIR-DGTIVLLTF 131 (261)
T ss_dssp EECCCTTSC-------CSCTTCBSEEEEESCGGGCSSHHHHHHHHH--HHBC-SSCEEEEEE
T ss_pred EEECchhhC-------CCCCCCEeEEEEcchHhhccCHHHHHHHHH--HHhC-CcEEEEEEc
Confidence 999998763 2235789999987543 2346677777775 4899 996655443
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.13 E-value=2.3e-10 Score=102.04 Aligned_cols=107 Identities=10% Similarity=-0.036 Sum_probs=78.7
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
.++.+|||+|||+|.++..++..+. +|+++|+++.++ +.+++|+. ..+++++++|+.+...... ++ ....||
T Consensus 55 ~~~~~vLD~GcG~G~~~~~la~~~~-~v~gvD~s~~~~-~~a~~~~~----~~~~~~~~~d~~~~~~~~~-~~-~~~~~d 126 (245)
T 3ggd_A 55 NPELPLIDFACGNGTQTKFLSQFFP-RVIGLDVSKSAL-EIAAKENT----AANISYRLLDGLVPEQAAQ-IH-SEIGDA 126 (245)
T ss_dssp CTTSCEEEETCTTSHHHHHHHHHSS-CEEEEESCHHHH-HHHHHHSC----CTTEEEEECCTTCHHHHHH-HH-HHHCSC
T ss_pred CCCCeEEEEcCCCCHHHHHHHHhCC-CEEEEECCHHHH-HHHHHhCc----ccCceEEECcccccccccc-cc-cccCcc
Confidence 3578999999999999999988877 799999999999 99998873 2358999999877532110 00 012489
Q ss_pred EEEECCCCCC-c--cHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 234 YMSVTPPYTA-V--DYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 234 lV~~dPPy~~-~--~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
+|+++..++. . +....++.+. ++|+|||++++...
T Consensus 127 ~v~~~~~~~~~~~~~~~~~l~~~~--~~LkpgG~l~i~~~ 164 (245)
T 3ggd_A 127 NIYMRTGFHHIPVEKRELLGQSLR--ILLGKQGAMYLIEL 164 (245)
T ss_dssp EEEEESSSTTSCGGGHHHHHHHHH--HHHTTTCEEEEEEE
T ss_pred EEEEcchhhcCCHHHHHHHHHHHH--HHcCCCCEEEEEeC
Confidence 9999765433 2 4556676665 48999998766543
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=3.1e-11 Score=108.48 Aligned_cols=104 Identities=12% Similarity=0.062 Sum_probs=77.8
Q ss_pred CCCeEEEECCCcchHHHHHHHc-CCCEEEEEeCC-HHHHHHHH---HHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCC
Q 021116 155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMD-PWVVSNVL---IPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKD 229 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~-Ga~~V~aVDin-~~al~~~a---r~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~ 229 (317)
++.+|||+|||+|.+++.++.+ ...+|++||++ +.++ +.| ++|++..++. +++++++|+.++.... .
T Consensus 24 ~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml-~~A~~A~~~~~~~~~~-~v~~~~~d~~~l~~~~------~ 95 (225)
T 3p2e_A 24 FDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLF-DISKKIIKKPSKGGLS-NVVFVIAAAESLPFEL------K 95 (225)
T ss_dssp CSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGH-HHHHHHTSCGGGTCCS-SEEEECCBTTBCCGGG------T
T ss_pred CCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHH-HHHHHHHHHHHHcCCC-CeEEEEcCHHHhhhhc------c
Confidence 5789999999999999987753 33479999999 7776 777 8888888886 4899999987652111 2
Q ss_pred CCccEEEECCCCCCc------cHHHHHHHHHHcCCcCCCeEEEEE
Q 021116 230 GPFDYMSVTPPYTAV------DYEVLMAQISKSALVGKDSFIVVE 268 (317)
Q Consensus 230 ~~fDlV~~dPPy~~~------~~~~~l~~L~~~~lLkpgG~ivv~ 268 (317)
+.+|.|.+++|+... .....++.+. ++|+|||++++.
T Consensus 96 d~v~~i~~~~~~~~~~~~~~~~~~~~l~~~~--r~LkpGG~l~i~ 138 (225)
T 3p2e_A 96 NIADSISILFPWGTLLEYVIKPNRDILSNVA--DLAKKEAHFEFV 138 (225)
T ss_dssp TCEEEEEEESCCHHHHHHHHTTCHHHHHHHH--TTEEEEEEEEEE
T ss_pred CeEEEEEEeCCCcHHhhhhhcchHHHHHHHH--HhcCCCcEEEEE
Confidence 568889999886431 1133455543 799999999983
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.6e-10 Score=100.74 Aligned_cols=100 Identities=14% Similarity=0.010 Sum_probs=77.7
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccE
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDl 234 (317)
++.+|||+|||+|.++..+ +..+|+++|+++.++ +.+++|. .+++++++|+.+. +..+++||+
T Consensus 36 ~~~~vLdiG~G~G~~~~~l---~~~~v~~vD~s~~~~-~~a~~~~------~~~~~~~~d~~~~-------~~~~~~fD~ 98 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL---PYPQKVGVEPSEAML-AVGRRRA------PEATWVRAWGEAL-------PFPGESFDV 98 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC---CCSEEEEECCCHHHH-HHHHHHC------TTSEEECCCTTSC-------CSCSSCEEE
T ss_pred CCCeEEEECCCCCHhHHhC---CCCeEEEEeCCHHHH-HHHHHhC------CCcEEEEcccccC-------CCCCCcEEE
Confidence 6789999999999998765 555899999999999 9998886 3478899998653 223568999
Q ss_pred EEECCCCC-CccHHHHHHHHHHcCCcCCCeEEEEEeCCCC
Q 021116 235 MSVTPPYT-AVDYEVLMAQISKSALVGKDSFIVVEYPLRT 273 (317)
Q Consensus 235 V~~dPPy~-~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~~ 273 (317)
|++..... ..+....++.+. ++|+|||++++......
T Consensus 99 v~~~~~l~~~~~~~~~l~~~~--~~L~pgG~l~i~~~~~~ 136 (211)
T 2gs9_A 99 VLLFTTLEFVEDVERVLLEAR--RVLRPGGALVVGVLEAL 136 (211)
T ss_dssp EEEESCTTTCSCHHHHHHHHH--HHEEEEEEEEEEEECTT
T ss_pred EEEcChhhhcCCHHHHHHHHH--HHcCCCCEEEEEecCCc
Confidence 99876543 235667777765 48999999998876443
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=1.8e-10 Score=95.73 Aligned_cols=105 Identities=10% Similarity=-0.010 Sum_probs=74.0
Q ss_pred CCCCeEEEECCCcchHHHHHHHc-CC-CEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHH--HHhhhcCCC
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISR-GC-SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE--RAEQFVGKD 229 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~-Ga-~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~--~~~~~~~~~ 229 (317)
.++.+|||+|||+|.++..+++. |. .+++++|+++ ++ +. .+++++.+|+.+... ..... ...
T Consensus 21 ~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~-~~-----------~~~~~~~~d~~~~~~~~~~~~~-~~~ 86 (180)
T 1ej0_A 21 KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MD-PI-----------VGVDFLQGDFRDELVMKALLER-VGD 86 (180)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CC-CC-----------TTEEEEESCTTSHHHHHHHHHH-HTT
T ss_pred CCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cc-cc-----------CcEEEEEcccccchhhhhhhcc-CCC
Confidence 35789999999999999988776 43 6899999999 75 43 348899999876520 00000 124
Q ss_pred CCccEEEECCCCCCc-cH-----------HHHHHHHHHcCCcCCCeEEEEEeCCCCC
Q 021116 230 GPFDYMSVTPPYTAV-DY-----------EVLMAQISKSALVGKDSFIVVEYPLRTD 274 (317)
Q Consensus 230 ~~fDlV~~dPPy~~~-~~-----------~~~l~~L~~~~lLkpgG~ivv~~~~~~~ 274 (317)
++||+|++|+|+... .. ...++.+. ++|+|||++++.......
T Consensus 87 ~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~L~~gG~l~~~~~~~~~ 141 (180)
T 1ej0_A 87 SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCR--DVLAPGGSFVVKVFQGEG 141 (180)
T ss_dssp CCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHH--HHEEEEEEEEEEEESSTT
T ss_pred CceeEEEECCCccccCCCccchHHHHHHHHHHHHHHH--HHcCCCcEEEEEEecCCc
Confidence 689999999987532 22 34444444 589999999987765544
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=1.5e-11 Score=110.42 Aligned_cols=111 Identities=13% Similarity=0.046 Sum_probs=78.8
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCC----------------------------C
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGF----------------------------L 205 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl----------------------------~ 205 (317)
.++.+|||+|||+|.+++.++..+..+|+++|+++.++ +.+++++...+. .
T Consensus 55 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 133 (265)
T 2i62_A 55 VKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNL-WELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLR 133 (265)
T ss_dssp CCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHH-HHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHH
T ss_pred cCCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHH-HHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhh
Confidence 46789999999999999988877766899999999999 999998865431 0
Q ss_pred Cce-EEEEecHHHHHHHHhhhcCCCCCccEEEECCCCC-----CccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 206 DVS-SIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYT-----AVDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 206 ~~v-~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~-----~~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
+++ +++.+|+.+..... +...++||+|++.-... ...+...++.+. ++|+|||++++...
T Consensus 134 ~~v~~~~~~d~~~~~~~~---~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~--~~LkpgG~li~~~~ 199 (265)
T 2i62_A 134 RAIKQVLKCDVTQSQPLG---GVSLPPADCLLSTLCLDAACPDLPAYRTALRNLG--SLLKPGGFLVMVDA 199 (265)
T ss_dssp HHEEEEEECCTTSSSTTT---TCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHH--TTEEEEEEEEEEEE
T ss_pred hhheeEEEeeeccCCCCC---ccccCCccEEEEhhhhhhhcCChHHHHHHHHHHH--hhCCCCcEEEEEec
Confidence 126 88999987642100 01126899999863221 013344555543 79999999998763
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.10 E-value=3.9e-10 Score=102.52 Aligned_cols=125 Identities=12% Similarity=-0.009 Sum_probs=81.7
Q ss_pred CCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCc
Q 021116 130 RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDV 207 (317)
Q Consensus 130 rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~-G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~ 207 (317)
.|....+...+.+.+.... ..++.+|||+|||+|.++..++.. | ..+|+++|+++.++ +.+.+.++.. .+
T Consensus 55 ~~~~skla~~ll~~l~~~~----l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l-~~l~~~a~~r---~n 126 (232)
T 3id6_C 55 NAFRSKLAGAILKGLKTNP----IRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVV-RELLLVAQRR---PN 126 (232)
T ss_dssp CTTTCHHHHHHHTTCSCCS----CCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHH-HHHHHHHHHC---TT
T ss_pred chHHHHHHHHHHhhhhhcC----CCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHH-HHHHHHhhhc---CC
Confidence 4444555666655543210 146899999999999999887654 3 45899999999987 6555544432 34
Q ss_pred eEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 208 SSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 208 v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
++++.+|+....... ...++||+|++|.+. .+..+.+.... .+.|+|||++++..
T Consensus 127 v~~i~~Da~~~~~~~----~~~~~~D~I~~d~a~--~~~~~il~~~~-~~~LkpGG~lvisi 181 (232)
T 3id6_C 127 IFPLLADARFPQSYK----SVVENVDVLYVDIAQ--PDQTDIAIYNA-KFFLKVNGDMLLVI 181 (232)
T ss_dssp EEEEECCTTCGGGTT----TTCCCEEEEEECCCC--TTHHHHHHHHH-HHHEEEEEEEEEEE
T ss_pred eEEEEcccccchhhh----ccccceEEEEecCCC--hhHHHHHHHHH-HHhCCCCeEEEEEE
Confidence 899999987532100 113689999999765 23333332221 23799999999874
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.09 E-value=6.9e-11 Score=119.71 Aligned_cols=101 Identities=15% Similarity=0.052 Sum_probs=77.0
Q ss_pred CCCCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHc--------C--------CCEEEEEeCCHHHH
Q 021116 128 DVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR--------G--------CSEVHFVEMDPWVV 191 (317)
Q Consensus 128 ~~rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~--------G--------a~~V~aVDin~~al 191 (317)
+...|...+.+.+.+++.. ...+|+|+|||||.+.++++.. + ...++|+|+|+.++
T Consensus 225 G~fyTP~~Vv~lmv~ll~p--------~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~ 296 (544)
T 3khk_A 225 GQYYTPKSIVTLIVEMLEP--------YKGRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTW 296 (544)
T ss_dssp TTTCCCHHHHHHHHHHHCC--------CSEEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHH
T ss_pred CeEeCCHHHHHHHHHHHhc--------CCCeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHH
Confidence 3456777888888888754 2349999999999999887531 0 23699999999998
Q ss_pred HHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCC
Q 021116 192 SNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTA 243 (317)
Q Consensus 192 ~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~ 243 (317)
++|+.|+...|+..++.+.++|...... ....+||+|++||||..
T Consensus 297 -~lA~~Nl~l~gi~~~i~i~~gDtL~~~~------~~~~~fD~Iv~NPPf~~ 341 (544)
T 3khk_A 297 -KLAAMNMVIRGIDFNFGKKNADSFLDDQ------HPDLRADFVMTNPPFNM 341 (544)
T ss_dssp -HHHHHHHHHTTCCCBCCSSSCCTTTSCS------CTTCCEEEEEECCCSSC
T ss_pred -HHHHHHHHHhCCCcccceeccchhcCcc------cccccccEEEECCCcCC
Confidence 9999999999987655557888654210 12368999999999974
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=99.09 E-value=2.9e-10 Score=104.03 Aligned_cols=116 Identities=12% Similarity=0.041 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEe
Q 021116 134 EVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTV 213 (317)
Q Consensus 134 ~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~g 213 (317)
..+.+.+.+.+.. .++.+|||+|||+|.++.+++.+|+.+|++||+|+.++ +.+++| . .++++++++
T Consensus 17 ~~i~~~iv~~~~~-------~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~-~~~~~~-~----~~~v~~i~~ 83 (249)
T 3ftd_A 17 EGVLKKIAEELNI-------EEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMV-ENLKSI-G----DERLEVINE 83 (249)
T ss_dssp HHHHHHHHHHTTC-------CTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHH-HHHTTS-C----CTTEEEECS
T ss_pred HHHHHHHHHhcCC-------CCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHH-HHHHhc-c----CCCeEEEEc
Confidence 4566677666653 36789999999999999999888767899999999999 999887 2 245899999
Q ss_pred cHHHHHHHHhhhcCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 214 RVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 214 D~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
|+.++.-. ...+. ..|+.|+||.. ...++..+.+....-+.+++++...
T Consensus 84 D~~~~~~~-----~~~~~-~~vv~NlPy~i--~~~il~~ll~~~~~~~~~~~m~Qke 132 (249)
T 3ftd_A 84 DASKFPFC-----SLGKE-LKVVGNLPYNV--ASLIIENTVYNKDCVPLAVFMVQKE 132 (249)
T ss_dssp CTTTCCGG-----GSCSS-EEEEEECCTTT--HHHHHHHHHHTGGGCSEEEEEEEHH
T ss_pred chhhCChh-----HccCC-cEEEEECchhc--cHHHHHHHHhcCCCCceEEEEEeHH
Confidence 98765210 00123 48899999964 3344444443333455666666543
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=2.3e-10 Score=106.25 Aligned_cols=91 Identities=14% Similarity=0.092 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEe
Q 021116 134 EVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTV 213 (317)
Q Consensus 134 ~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~g 213 (317)
..+.+.+.+.+.. .++ +|||+|||+|.++..++.++. +|++||+|+.++ +.+++|+.. ++++++++
T Consensus 33 ~~i~~~Iv~~~~~-------~~~-~VLEIG~G~G~lt~~L~~~~~-~V~avEid~~~~-~~l~~~~~~----~~v~vi~~ 98 (271)
T 3fut_A 33 EAHLRRIVEAARP-------FTG-PVFEVGPGLGALTRALLEAGA-EVTAIEKDLRLR-PVLEETLSG----LPVRLVFQ 98 (271)
T ss_dssp HHHHHHHHHHHCC-------CCS-CEEEECCTTSHHHHHHHHTTC-CEEEEESCGGGH-HHHHHHTTT----SSEEEEES
T ss_pred HHHHHHHHHhcCC-------CCC-eEEEEeCchHHHHHHHHHcCC-EEEEEECCHHHH-HHHHHhcCC----CCEEEEEC
Confidence 4466667676654 356 999999999999999998874 799999999999 999998762 46999999
Q ss_pred cHHHHHHHHhhhcCCCCCccEEEECCCCCCc
Q 021116 214 RVETFLERAEQFVGKDGPFDYMSVTPPYTAV 244 (317)
Q Consensus 214 D~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~ 244 (317)
|+.++... ....+|.|+.|+||...
T Consensus 99 D~l~~~~~------~~~~~~~iv~NlPy~is 123 (271)
T 3fut_A 99 DALLYPWE------EVPQGSLLVANLPYHIA 123 (271)
T ss_dssp CGGGSCGG------GSCTTEEEEEEECSSCC
T ss_pred ChhhCChh------hccCccEEEecCccccc
Confidence 99875211 01368999999999753
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=99.07 E-value=6.7e-10 Score=100.88 Aligned_cols=90 Identities=14% Similarity=0.128 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEe
Q 021116 134 EVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTV 213 (317)
Q Consensus 134 ~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~g 213 (317)
..+.+.+.+.+.. .++.+|||+|||+|.++..++.++ .+|++||+|+.++ +.+++|++.. ++++++++
T Consensus 16 ~~~~~~i~~~~~~-------~~~~~VLDiG~G~G~lt~~l~~~~-~~v~~vD~~~~~~-~~a~~~~~~~---~~v~~~~~ 83 (244)
T 1qam_A 16 KHNIDKIMTNIRL-------NEHDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLC-KTTENKLVDH---DNFQVLNK 83 (244)
T ss_dssp HHHHHHHHTTCCC-------CTTCEEEEECCTTSHHHHHHHHHS-SEEEEECSCHHHH-HHHHHHTTTC---CSEEEECC
T ss_pred HHHHHHHHHhCCC-------CCCCEEEEEeCCchHHHHHHHHcC-CeEEEEECCHHHH-HHHHHhhccC---CCeEEEEC
Confidence 4455555554432 357899999999999999998887 5799999999999 9999998642 46999999
Q ss_pred cHHHHHHHHhhhcCC-CCCccEEEECCCCCC
Q 021116 214 RVETFLERAEQFVGK-DGPFDYMSVTPPYTA 243 (317)
Q Consensus 214 D~~~~l~~~~~~~~~-~~~fDlV~~dPPy~~ 243 (317)
|+.++. .. ...| .|+.||||..
T Consensus 84 D~~~~~-------~~~~~~~-~vv~nlPy~~ 106 (244)
T 1qam_A 84 DILQFK-------FPKNQSY-KIFGNIPYNI 106 (244)
T ss_dssp CGGGCC-------CCSSCCC-EEEEECCGGG
T ss_pred hHHhCC-------cccCCCe-EEEEeCCccc
Confidence 987642 11 1234 6899999964
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=1.9e-10 Score=108.17 Aligned_cols=91 Identities=14% Similarity=0.078 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEe
Q 021116 134 EVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTV 213 (317)
Q Consensus 134 ~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~g 213 (317)
..+.+.+.+.+.. .++.+|||+|||+|.++..++.++ .+|++||+|+.++ +.+++|++. . ++++++++
T Consensus 36 ~~i~~~Iv~~l~~-------~~~~~VLEIG~G~G~lT~~La~~~-~~V~aVEid~~li-~~a~~~~~~--~-~~v~vi~g 103 (295)
T 3gru_A 36 KNFVNKAVESANL-------TKDDVVLEIGLGKGILTEELAKNA-KKVYVIEIDKSLE-PYANKLKEL--Y-NNIEIIWG 103 (295)
T ss_dssp HHHHHHHHHHTTC-------CTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCGGGH-HHHHHHHHH--C-SSEEEEES
T ss_pred HHHHHHHHHhcCC-------CCcCEEEEECCCchHHHHHHHhcC-CEEEEEECCHHHH-HHHHHHhcc--C-CCeEEEEC
Confidence 4566667666643 367899999999999999988875 5899999999999 999999873 2 45999999
Q ss_pred cHHHHHHHHhhhcCCCCCccEEEECCCCCC
Q 021116 214 RVETFLERAEQFVGKDGPFDYMSVTPPYTA 243 (317)
Q Consensus 214 D~~~~l~~~~~~~~~~~~fDlV~~dPPy~~ 243 (317)
|+.++. + ....||.|+.|+||..
T Consensus 104 D~l~~~--~-----~~~~fD~Iv~NlPy~i 126 (295)
T 3gru_A 104 DALKVD--L-----NKLDFNKVVANLPYQI 126 (295)
T ss_dssp CTTTSC--G-----GGSCCSEEEEECCGGG
T ss_pred chhhCC--c-----ccCCccEEEEeCcccc
Confidence 987642 1 1246999999999964
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=99.06 E-value=7.3e-11 Score=108.83 Aligned_cols=98 Identities=7% Similarity=0.004 Sum_probs=77.3
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHh--CC-CCceEEEEecHHHHHHHHhhhcCCCCC
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWT--GF-LDVSSIHTVRVETFLERAEQFVGKDGP 231 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~--gl-~~~v~ii~gD~~~~l~~~~~~~~~~~~ 231 (317)
.+.+|||+|||+|.++.++++.+ .+|++||+|+.++ +.|++|+... ++ .++++++.+|+.+++ ++
T Consensus 72 ~~~~VL~iG~G~G~~~~~ll~~~-~~v~~veid~~~i-~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~----------~~ 139 (262)
T 2cmg_A 72 ELKEVLIVDGFDLELAHQLFKYD-THIDFVQADEKIL-DSFISFFPHFHEVKNNKNFTHAKQLLDLDI----------KK 139 (262)
T ss_dssp CCCEEEEESSCCHHHHHHHTTSS-CEEEEECSCHHHH-GGGTTTSTTHHHHHTCTTEEEESSGGGSCC----------CC
T ss_pred CCCEEEEEeCCcCHHHHHHHhCC-CEEEEEECCHHHH-HHHHHHHHhhccccCCCeEEEEechHHHHH----------hh
Confidence 46899999999999999988776 8999999999999 9999887542 22 257999999987653 57
Q ss_pred ccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 232 FDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 232 fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
||+|++|.+-. ...++.+. +.|+|||++++...
T Consensus 140 fD~Ii~d~~dp----~~~~~~~~--~~L~pgG~lv~~~~ 172 (262)
T 2cmg_A 140 YDLIFCLQEPD----IHRIDGLK--RMLKEDGVFISVAK 172 (262)
T ss_dssp EEEEEESSCCC----HHHHHHHH--TTEEEEEEEEEEEE
T ss_pred CCEEEECCCCh----HHHHHHHH--HhcCCCcEEEEEcC
Confidence 99999996421 22455554 68999999998754
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=5.8e-10 Score=105.98 Aligned_cols=103 Identities=13% Similarity=0.004 Sum_probs=80.3
Q ss_pred CCCeEEEECCCcchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
++.+|||+|||+|.+++.++... ..+++++|+ +.++ +.|++|+...++.++++++.+|+.+.+ ...||
T Consensus 182 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~~~---------~~~~D 250 (374)
T 1qzz_A 182 AVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPA-ERARRRFADAGLADRVTVAEGDFFKPL---------PVTAD 250 (374)
T ss_dssp TCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHH-HHHHHHHHHTTCTTTEEEEECCTTSCC---------SCCEE
T ss_pred CCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHH-HHHHHHHHhcCCCCceEEEeCCCCCcC---------CCCCC
Confidence 56899999999999999888764 348999999 9999 999999999998878999999986522 13499
Q ss_pred EEEECCCCCCc-c--HHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 234 YMSVTPPYTAV-D--YEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 234 lV~~dPPy~~~-~--~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
+|++...++.. + ...+++.+. +.|+|||++++...
T Consensus 251 ~v~~~~vl~~~~~~~~~~~l~~~~--~~L~pgG~l~i~e~ 288 (374)
T 1qzz_A 251 VVLLSFVLLNWSDEDALTILRGCV--RALEPGGRLLVLDR 288 (374)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHH--HHEEEEEEEEEEEC
T ss_pred EEEEeccccCCCHHHHHHHHHHHH--HhcCCCcEEEEEec
Confidence 99997654322 2 135566554 48999998887554
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.05 E-value=4.4e-10 Score=99.21 Aligned_cols=98 Identities=14% Similarity=0.082 Sum_probs=73.8
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccE
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDl 234 (317)
++.+|||+|||+|.++..++..+. +|+++|+++.++ +.++++. .+++++.+|+.+.. . .++||+
T Consensus 40 ~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~s~~~~-~~a~~~~------~~~~~~~~d~~~~~-------~-~~~~D~ 103 (239)
T 3bxo_A 40 EASSLLDVACGTGTHLEHFTKEFG-DTAGLELSEDML-THARKRL------PDATLHQGDMRDFR-------L-GRKFSA 103 (239)
T ss_dssp TCCEEEEETCTTSHHHHHHHHHHS-EEEEEESCHHHH-HHHHHHC------TTCEEEECCTTTCC-------C-SSCEEE
T ss_pred CCCeEEEecccCCHHHHHHHHhCC-cEEEEeCCHHHH-HHHHHhC------CCCEEEECCHHHcc-------c-CCCCcE
Confidence 578999999999999998888765 799999999999 9998874 23789999987642 1 468999
Q ss_pred EEE-CCCC-CC---ccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 235 MSV-TPPY-TA---VDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 235 V~~-dPPy-~~---~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
|++ .-.. +. ......++.+. ++|+|||+++++..
T Consensus 104 v~~~~~~~~~~~~~~~~~~~l~~~~--~~L~pgG~l~~~~~ 142 (239)
T 3bxo_A 104 VVSMFSSVGYLKTTEELGAAVASFA--EHLEPGGVVVVEPW 142 (239)
T ss_dssp EEECTTGGGGCCSHHHHHHHHHHHH--HTEEEEEEEEECCC
T ss_pred EEEcCchHhhcCCHHHHHHHHHHHH--HhcCCCeEEEEEec
Confidence 995 3121 11 12344555554 58999999999754
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.04 E-value=1.4e-09 Score=114.39 Aligned_cols=122 Identities=11% Similarity=0.092 Sum_probs=87.7
Q ss_pred CChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCC--CEEEEEeCCHHHHHHHHHHhHHHh------
Q 021116 131 PMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGC--SEVHFVEMDPWVVSNVLIPNLEWT------ 202 (317)
Q Consensus 131 pt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga--~~V~aVDin~~al~~~ar~N~~~~------ 202 (317)
|......+.+.+.+.. .++.+|||+|||+|.+++.++..+. .+|++||+++.++ +.|+++++..
T Consensus 704 PL~eqRle~LLelL~~-------~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emL-e~AReRLa~~lnAkr~ 775 (950)
T 3htx_A 704 PLSKQRVEYALKHIRE-------SSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGL-ARAAKMLHVKLNKEAC 775 (950)
T ss_dssp CHHHHHHHHHHHHHHH-------SCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHH-HHHHHHHHHHTTTTCS
T ss_pred hHHHHHHHHHHHHhcc-------cCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHH-HHHHHHhhhccchhhc
Confidence 4444455566677765 3688999999999999998888763 5899999999999 9999976532
Q ss_pred CCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCcc---HHHHHHHHHHcCCcCCCeEEEEEeCC
Q 021116 203 GFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVD---YEVLMAQISKSALVGKDSFIVVEYPL 271 (317)
Q Consensus 203 gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~---~~~~l~~L~~~~lLkpgG~ivv~~~~ 271 (317)
++. +++++++|+.++. ...+.||+|++.-....-. ....++.+. ++|+|| ++++..+.
T Consensus 776 gl~-nVefiqGDa~dLp-------~~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~--RvLKPG-~LIISTPN 836 (950)
T 3htx_A 776 NVK-SATLYDGSILEFD-------SRLHDVDIGTCLEVIEHMEEDQACEFGEKVL--SLFHPK-LLIVSTPN 836 (950)
T ss_dssp SCS-EEEEEESCTTSCC-------TTSCSCCEEEEESCGGGSCHHHHHHHHHHHH--HTTCCS-EEEEEECB
T ss_pred CCC-ceEEEECchHhCC-------cccCCeeEEEEeCchhhCChHHHHHHHHHHH--HHcCCC-EEEEEecC
Confidence 443 5999999987642 2357899999965432211 223444444 589999 77776643
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=6.1e-10 Score=105.43 Aligned_cols=104 Identities=13% Similarity=0.057 Sum_probs=80.5
Q ss_pred CCCeEEEECCCcchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
++.+|||+|||+|.+++.++..+ ..+++++|+ +.++ +.|++|++..++.++++++.+|+.+.+ ...||
T Consensus 183 ~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~~~---------~~~~D 251 (360)
T 1tw3_A 183 NVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTV-DTARSYLKDEGLSDRVDVVEGDFFEPL---------PRKAD 251 (360)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHH-HHHHHHHHHTTCTTTEEEEECCTTSCC---------SSCEE
T ss_pred cCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHH-HHHHHHHHhcCCCCceEEEeCCCCCCC---------CCCcc
Confidence 56899999999999999888764 347999999 8998 999999999998878999999986522 23499
Q ss_pred EEEECCCCCCccH---HHHHHHHHHcCCcCCCeEEEEEeCC
Q 021116 234 YMSVTPPYTAVDY---EVLMAQISKSALVGKDSFIVVEYPL 271 (317)
Q Consensus 234 lV~~dPPy~~~~~---~~~l~~L~~~~lLkpgG~ivv~~~~ 271 (317)
+|++...++...- ..+++.+. +.|+|||++++....
T Consensus 252 ~v~~~~vl~~~~~~~~~~~l~~~~--~~L~pgG~l~i~e~~ 290 (360)
T 1tw3_A 252 AIILSFVLLNWPDHDAVRILTRCA--EALEPGGRILIHERD 290 (360)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHH--HTEEEEEEEEEEECC
T ss_pred EEEEcccccCCCHHHHHHHHHHHH--HhcCCCcEEEEEEEe
Confidence 9998765432221 34566554 589999998876543
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=99.02 E-value=6.8e-10 Score=116.36 Aligned_cols=108 Identities=14% Similarity=0.111 Sum_probs=72.9
Q ss_pred CCCCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcC----CCEEEEEeCCHHHHHHHH--HHhHHH
Q 021116 128 DVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRG----CSEVHFVEMDPWVVSNVL--IPNLEW 201 (317)
Q Consensus 128 ~~rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~G----a~~V~aVDin~~al~~~a--r~N~~~ 201 (317)
+..+|...+++.+.+++..... .....+.+|||+|||||.+.++++.+. ..+++|+|+|+.++ +.| +.|+..
T Consensus 295 GqFYTP~eLA~lMVeLA~ill~-~~l~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al-~LAK~RlNL~l 372 (878)
T 3s1s_A 295 GVVPTDIELGKVLSIISQHILG-RPLTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFL-ELLSIRLGLLF 372 (878)
T ss_dssp BSSSCCHHHHHHHHHHHHHHHC-SCCCTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGH-HHHHHHHHTTS
T ss_pred ceEcCCHHHHHHHHHHHhhhcc-ccCCCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHH-HHHHHHHHHHH
Confidence 4466777788887776211100 001247899999999999999887653 23699999999998 999 888776
Q ss_pred hCCCC---ceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCC
Q 021116 202 TGFLD---VSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTA 243 (317)
Q Consensus 202 ~gl~~---~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~ 243 (317)
+++.. ...+...|..+.... ....||+|++||||..
T Consensus 373 N~LlhGi~~~~I~~dD~L~~~~~------~~~kFDVVIgNPPYg~ 411 (878)
T 3s1s_A 373 PQLVSSNNAPTITGEDVCSLNPE------DFANVSVVVMNPPYVS 411 (878)
T ss_dssp TTTCBTTBCCEEECCCGGGCCGG------GGTTEEEEEECCBCCS
T ss_pred hhhhcCCCcceEEecchhccccc------ccCCCCEEEECCCccc
Confidence 43321 134555665542100 1367999999999964
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=2.9e-10 Score=116.93 Aligned_cols=102 Identities=13% Similarity=0.142 Sum_probs=76.1
Q ss_pred CCCeEEEECCCcchHH---HHHHHcCCC--EEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCC
Q 021116 155 RPGRWLDLYSGTGSVG---IEAISRGCS--EVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKD 229 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~---Ieaas~Ga~--~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~ 229 (317)
++..|||+|||+|.+. +.|+++++. +|+|||.|+.| ..|+++.+.||++++|+++++|++++. ..
T Consensus 357 ~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~A--~~a~~~v~~N~~~dkVtVI~gd~eev~--------LP 426 (637)
T 4gqb_A 357 NVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPNA--VVTLENWQFEEWGSQVTVVSSDMREWV--------AP 426 (637)
T ss_dssp CEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHHH--HHHHHHHHHHTTGGGEEEEESCTTTCC--------CS
T ss_pred CCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHHH--HHHHHHHHhccCCCeEEEEeCcceecc--------CC
Confidence 4568999999999994 445455444 68999999966 589999999999999999999999872 24
Q ss_pred CCccEEEECCCCCCccHHHHHHHHH-HcCCcCCCeEEE
Q 021116 230 GPFDYMSVTPPYTAVDYEVLMAQIS-KSALVGKDSFIV 266 (317)
Q Consensus 230 ~~fDlV~~dPPy~~~~~~~~l~~L~-~~~lLkpgG~iv 266 (317)
+++|+||....=....+|-.++.+. ..++|+|||+++
T Consensus 427 EKVDIIVSEwMG~fLl~E~mlevL~Ardr~LKPgGimi 464 (637)
T 4gqb_A 427 EKADIIVSELLGSFADNELSPECLDGAQHFLKDDGVSI 464 (637)
T ss_dssp SCEEEEECCCCBTTBGGGCHHHHHHHHGGGEEEEEEEE
T ss_pred cccCEEEEEcCcccccccCCHHHHHHHHHhcCCCcEEc
Confidence 7899999986411123333333332 247999999976
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.00 E-value=1.5e-09 Score=98.15 Aligned_cols=99 Identities=19% Similarity=0.219 Sum_probs=75.3
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccE
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDl 234 (317)
++.+|||+|||+|.++..++..|. +|+++|+++.++ +.++++.. +. ++.+|+.+. +..+++||+
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l-~~a~~~~~-----~~--~~~~d~~~~-------~~~~~~fD~ 117 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQERGF-EVVLVDPSKEML-EVAREKGV-----KN--VVEAKAEDL-------PFPSGAFEA 117 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHH-HHHHHHTC-----SC--EEECCTTSC-------CSCTTCEEE
T ss_pred CCCeEEEeCCCcCHHHHHHHHcCC-eEEEEeCCHHHH-HHHHhhcC-----CC--EEECcHHHC-------CCCCCCEEE
Confidence 578999999999999998888765 799999999999 99988754 11 788887653 123578999
Q ss_pred EEECCCC-CC-ccHHHHHHHHHHcCCcCCCeEEEEEeCC
Q 021116 235 MSVTPPY-TA-VDYEVLMAQISKSALVGKDSFIVVEYPL 271 (317)
Q Consensus 235 V~~dPPy-~~-~~~~~~l~~L~~~~lLkpgG~ivv~~~~ 271 (317)
|++.... +. .+....++.+. ++|+|||++++....
T Consensus 118 v~~~~~~~~~~~~~~~~l~~~~--~~LkpgG~l~~~~~~ 154 (260)
T 2avn_A 118 VLALGDVLSYVENKDKAFSEIR--RVLVPDGLLIATVDN 154 (260)
T ss_dssp EEECSSHHHHCSCHHHHHHHHH--HHEEEEEEEEEEEEB
T ss_pred EEEcchhhhccccHHHHHHHHH--HHcCCCeEEEEEeCC
Confidence 9986432 11 24566666665 489999999987653
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.00 E-value=6.3e-10 Score=102.20 Aligned_cols=112 Identities=12% Similarity=0.054 Sum_probs=71.4
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHh-----------------CCCC----------
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWT-----------------GFLD---------- 206 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~-----------------gl~~---------- 206 (317)
.++.+|||+|||+|...+.++..+..+|+++|+++.++ +.|+++++.. +...
T Consensus 70 ~~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l-~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 148 (289)
T 2g72_A 70 VSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNR-QELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLR 148 (289)
T ss_dssp SCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHH-HHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHH
T ss_pred CCCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHH-HHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHH
Confidence 36789999999999976544444445899999999999 9998866421 1000
Q ss_pred --ceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCC-----ccHHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 207 --VSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTA-----VDYEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 207 --~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~-----~~~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
.++++.+|+.+.+.... .....++||+|++.--+.. .+....++.+. ++|+|||++++..
T Consensus 149 ~~~~~~~~~D~~~~~~~~~-~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~--r~LkpGG~l~~~~ 215 (289)
T 2g72_A 149 ARVKRVLPIDVHQPQPLGA-GSPAPLPADALVSAFCLEAVSPDLASFQRALDHIT--TLLRPGGHLLLIG 215 (289)
T ss_dssp HHEEEEECCCTTSSSTTCS-SCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHH--TTEEEEEEEEEEE
T ss_pred hhhceEEecccCCCCCccc-cccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHH--HhcCCCCEEEEEE
Confidence 14566678765221000 0012356999999743221 12344454443 7999999999863
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=98.99 E-value=1.2e-09 Score=102.09 Aligned_cols=104 Identities=16% Similarity=0.119 Sum_probs=79.7
Q ss_pred CCCeEEEECCCcchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
++.+|||+|||+|.++..++... ..+++++|++ .++ +.|++|+...++.++++++.+|+.+.. . .+.||
T Consensus 165 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~-~~a~~~~~~~~~~~~v~~~~~d~~~~~--~------~~~~D 234 (335)
T 2r3s_A 165 EPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVL-EVAKENARIQGVASRYHTIAGSAFEVD--Y------GNDYD 234 (335)
T ss_dssp CCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHH-HHHHHHHHHHTCGGGEEEEESCTTTSC--C------CSCEE
T ss_pred CCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHH-HHHHHHHHhcCCCcceEEEecccccCC--C------CCCCc
Confidence 46899999999999999887762 3489999999 998 999999999998878999999987531 1 23499
Q ss_pred EEEECCC-CCCc--cHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 234 YMSVTPP-YTAV--DYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 234 lV~~dPP-y~~~--~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
+|++.-. +... ....+++.+. +.|+|||++++...
T Consensus 235 ~v~~~~~l~~~~~~~~~~~l~~~~--~~L~pgG~l~i~e~ 272 (335)
T 2r3s_A 235 LVLLPNFLHHFDVATCEQLLRKIK--TALAVEGKVIVFDF 272 (335)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHH--HHEEEEEEEEEEEC
T ss_pred EEEEcchhccCCHHHHHHHHHHHH--HhCCCCcEEEEEee
Confidence 9998433 3321 2345566654 47999998877654
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=98.99 E-value=8.6e-10 Score=96.22 Aligned_cols=100 Identities=16% Similarity=0.201 Sum_probs=75.6
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccE
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDl 234 (317)
++.+|||+|||+|.++..++..| .+|+++|+++.++ +.++++.. +++.+|+.++. .+..+++||+
T Consensus 32 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~~D~~~~~~-~~~~~~~~--------~~~~~d~~~~~-----~~~~~~~fD~ 96 (230)
T 3cc8_A 32 EWKEVLDIGCSSGALGAAIKENG-TRVSGIEAFPEAA-EQAKEKLD--------HVVLGDIETMD-----MPYEEEQFDC 96 (230)
T ss_dssp TCSEEEEETCTTSHHHHHHHTTT-CEEEEEESSHHHH-HHHHTTSS--------EEEESCTTTCC-----CCSCTTCEEE
T ss_pred CCCcEEEeCCCCCHHHHHHHhcC-CeEEEEeCCHHHH-HHHHHhCC--------cEEEcchhhcC-----CCCCCCccCE
Confidence 57899999999999999888776 6899999999998 88887642 57888876531 1123468999
Q ss_pred EEECCCCC-CccHHHHHHHHHHcCCcCCCeEEEEEeCC
Q 021116 235 MSVTPPYT-AVDYEVLMAQISKSALVGKDSFIVVEYPL 271 (317)
Q Consensus 235 V~~dPPy~-~~~~~~~l~~L~~~~lLkpgG~ivv~~~~ 271 (317)
|++.-... ..+....++.+. ++|+|||++++..+.
T Consensus 97 v~~~~~l~~~~~~~~~l~~~~--~~L~~gG~l~~~~~~ 132 (230)
T 3cc8_A 97 VIFGDVLEHLFDPWAVIEKVK--PYIKQNGVILASIPN 132 (230)
T ss_dssp EEEESCGGGSSCHHHHHHHTG--GGEEEEEEEEEEEEC
T ss_pred EEECChhhhcCCHHHHHHHHH--HHcCCCCEEEEEeCC
Confidence 99865432 234566666654 589999999998654
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.99 E-value=4e-10 Score=98.69 Aligned_cols=105 Identities=5% Similarity=-0.071 Sum_probs=69.0
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHH--HHHhh-hc-CCC
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL--ERAEQ-FV-GKD 229 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l--~~~~~-~~-~~~ 229 (317)
.++.+|||+|||+|.++..++.++ .+|++||+++.. .. .+++++++|+.+.. ..... +. ...
T Consensus 24 ~~g~~VLDlG~G~G~~s~~la~~~-~~V~gvD~~~~~------------~~-~~v~~~~~D~~~~~~~~~~~~~~~~~~~ 89 (191)
T 3dou_A 24 RKGDAVIEIGSSPGGWTQVLNSLA-RKIISIDLQEME------------EI-AGVRFIRCDIFKETIFDDIDRALREEGI 89 (191)
T ss_dssp CTTCEEEEESCTTCHHHHHHTTTC-SEEEEEESSCCC------------CC-TTCEEEECCTTSSSHHHHHHHHHHHHTC
T ss_pred CCCCEEEEEeecCCHHHHHHHHcC-CcEEEEeccccc------------cC-CCeEEEEccccCHHHHHHHHHHhhcccC
Confidence 368899999999999999888874 589999999842 12 24889999986531 10000 00 001
Q ss_pred CCccEEEECCCCCC-cc--H---------HHHHHHHHHcCCcCCCeEEEEEeCCCCC
Q 021116 230 GPFDYMSVTPPYTA-VD--Y---------EVLMAQISKSALVGKDSFIVVEYPLRTD 274 (317)
Q Consensus 230 ~~fDlV~~dPPy~~-~~--~---------~~~l~~L~~~~lLkpgG~ivv~~~~~~~ 274 (317)
++||+|++|++... +. . +..++. ..++|+|||.+++.......
T Consensus 90 ~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~--a~~~LkpGG~lv~k~~~~~~ 144 (191)
T 3dou_A 90 EKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEI--AVRYLRNGGNVLLKQFQGDM 144 (191)
T ss_dssp SSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHH--HHHHEEEEEEEEEEEECSTH
T ss_pred CcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHH--HHHHccCCCEEEEEEcCCCC
Confidence 38999999986542 21 1 122222 23689999999987654433
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=2.9e-09 Score=101.14 Aligned_cols=102 Identities=10% Similarity=0.056 Sum_probs=79.6
Q ss_pred CCCeEEEECCCcchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
++.+|||+|||+|.++..++++. ..+++++|+ +.++ +.+++|++..++.++++++.+|+.+.. -+.+|
T Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~~~---------~~~~D 258 (359)
T 1x19_A 190 GVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAI-DLVNENAAEKGVADRMRGIAVDIYKES---------YPEAD 258 (359)
T ss_dssp TCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGH-HHHHHHHHHTTCTTTEEEEECCTTTSC---------CCCCS
T ss_pred CCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHH-HHHHHHHHhcCCCCCEEEEeCccccCC---------CCCCC
Confidence 57899999999999999888763 348999999 9998 999999999998888999999987531 13459
Q ss_pred EEEECCCCC-Ccc--HHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 234 YMSVTPPYT-AVD--YEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 234 lV~~dPPy~-~~~--~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
+|++.-.++ ..+ ...+++.+. +.|+|||++++..
T Consensus 259 ~v~~~~vlh~~~d~~~~~~l~~~~--~~L~pgG~l~i~e 295 (359)
T 1x19_A 259 AVLFCRILYSANEQLSTIMCKKAF--DAMRSGGRLLILD 295 (359)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHH--TTCCTTCEEEEEE
T ss_pred EEEEechhccCCHHHHHHHHHHHH--HhcCCCCEEEEEe
Confidence 999865443 222 345555554 6899999996654
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=4.5e-09 Score=100.58 Aligned_cols=103 Identities=17% Similarity=0.088 Sum_probs=80.2
Q ss_pred CCCeEEEECCCcchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
+..+|||+|||+|.+++.+++.. ..+++++|+ +.++ +.|++++...++.++++++.+|+.+.+ ...||
T Consensus 202 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~-~~a~~~~~~~~l~~~v~~~~~d~~~~~---------p~~~D 270 (369)
T 3gwz_A 202 GAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVA-EEARELLTGRGLADRCEILPGDFFETI---------PDGAD 270 (369)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHH-HHHHHHHHHTTCTTTEEEEECCTTTCC---------CSSCS
T ss_pred cCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHH-HHHHHhhhhcCcCCceEEeccCCCCCC---------CCCce
Confidence 46899999999999999887763 347999999 9998 999999999998888999999987321 23799
Q ss_pred EEEECCCCCCccHH---HHHHHHHHcCCcCCCeEEEEEeC
Q 021116 234 YMSVTPPYTAVDYE---VLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 234 lV~~dPPy~~~~~~---~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
+|++.-..+...-+ .+++.+. +.|+|||++++...
T Consensus 271 ~v~~~~vlh~~~d~~~~~~L~~~~--~~L~pgG~l~i~e~ 308 (369)
T 3gwz_A 271 VYLIKHVLHDWDDDDVVRILRRIA--TAMKPDSRLLVIDN 308 (369)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHH--TTCCTTCEEEEEEE
T ss_pred EEEhhhhhccCCHHHHHHHHHHHH--HHcCCCCEEEEEEe
Confidence 99986443322222 4555554 68999999987653
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=98.98 E-value=1.8e-09 Score=103.15 Aligned_cols=106 Identities=16% Similarity=0.153 Sum_probs=79.3
Q ss_pred CCCeEEEECCCcchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
...+|||+|||+|.+++.++++. ..+++++|+ +.++ +.|+++++..++.++++++.+|+.+.. ++. .+.||
T Consensus 179 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~~-p~~~D 250 (363)
T 3dp7_A 179 HPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQL-EMMRKQTAGLSGSERIHGHGANLLDRD-----VPF-PTGFD 250 (363)
T ss_dssp CCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHH-HHHHHHHTTCTTGGGEEEEECCCCSSS-----CCC-CCCCS
T ss_pred CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHH-HHHHHHHHhcCcccceEEEEccccccC-----CCC-CCCcC
Confidence 46899999999999999887753 348999999 9998 999999998888778999999986530 000 25799
Q ss_pred EEEECCCCCCcc---HHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 234 YMSVTPPYTAVD---YEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 234 lV~~dPPy~~~~---~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
+|++.--.+... ...+++.+. +.|+|||++++...
T Consensus 251 ~v~~~~vlh~~~~~~~~~~l~~~~--~~L~pgG~l~i~e~ 288 (363)
T 3dp7_A 251 AVWMSQFLDCFSEEEVISILTRVA--QSIGKDSKVYIMET 288 (363)
T ss_dssp EEEEESCSTTSCHHHHHHHHHHHH--HHCCTTCEEEEEEC
T ss_pred EEEEechhhhCCHHHHHHHHHHHH--HhcCCCcEEEEEee
Confidence 999854332212 234455554 47999999987654
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=98.96 E-value=1.8e-10 Score=104.27 Aligned_cols=99 Identities=12% Similarity=0.172 Sum_probs=68.1
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEE-ecHHHHH-HHHhhhcCCCCC
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHT-VRVETFL-ERAEQFVGKDGP 231 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~-gD~~~~l-~~~~~~~~~~~~ 231 (317)
..+.+|||+|||||.++..++++|+.+|++||+++.++ +.+++|..... ... .++.... ..+ ....
T Consensus 36 ~~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml-~~a~~~~~~~~------~~~~~~~~~~~~~~~-----~~~~ 103 (232)
T 3opn_A 36 INGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQL-AWKIRSDERVV------VMEQFNFRNAVLADF-----EQGR 103 (232)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCC-CHHHHTCTTEE------EECSCCGGGCCGGGC-----CSCC
T ss_pred CCCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHH-HHHHHhCcccc------ccccceEEEeCHhHc-----CcCC
Confidence 46789999999999999999988877999999999999 88877644321 111 1221110 000 1123
Q ss_pred ccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEE
Q 021116 232 FDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVE 268 (317)
Q Consensus 232 fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~ 268 (317)
||.+.+|..|.. +...+..+. ++|+|||++++.
T Consensus 104 ~d~~~~D~v~~~--l~~~l~~i~--rvLkpgG~lv~~ 136 (232)
T 3opn_A 104 PSFTSIDVSFIS--LDLILPPLY--EILEKNGEVAAL 136 (232)
T ss_dssp CSEEEECCSSSC--GGGTHHHHH--HHSCTTCEEEEE
T ss_pred CCEEEEEEEhhh--HHHHHHHHH--HhccCCCEEEEE
Confidence 688888876642 355666665 489999999886
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.93 E-value=2.8e-10 Score=106.85 Aligned_cols=100 Identities=11% Similarity=0.115 Sum_probs=69.8
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEE-ecHHHHHHHHhhhcCCCCCc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHT-VRVETFLERAEQFVGKDGPF 232 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~-gD~~~~l~~~~~~~~~~~~f 232 (317)
..+.+|||+|||||.++..++.+|+.+|++||+++.++ +.+.++- .++..+. .|+..... ..+ ....|
T Consensus 84 ~~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL-~~a~r~~------~rv~~~~~~ni~~l~~--~~l--~~~~f 152 (291)
T 3hp7_A 84 VEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQL-VWKLRQD------DRVRSMEQYNFRYAEP--VDF--TEGLP 152 (291)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCS-CHHHHTC------TTEEEECSCCGGGCCG--GGC--TTCCC
T ss_pred ccccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHH-HHHHHhC------cccceecccCceecch--hhC--CCCCC
Confidence 46789999999999999988889988999999999998 7754431 1222221 23332210 001 12359
Q ss_pred cEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEE
Q 021116 233 DYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVE 268 (317)
Q Consensus 233 DlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~ 268 (317)
|+|++|--|. .+...+..+. ++|+|||.+++.
T Consensus 153 D~v~~d~sf~--sl~~vL~e~~--rvLkpGG~lv~l 184 (291)
T 3hp7_A 153 SFASIDVSFI--SLNLILPALA--KILVDGGQVVAL 184 (291)
T ss_dssp SEEEECCSSS--CGGGTHHHHH--HHSCTTCEEEEE
T ss_pred CEEEEEeeHh--hHHHHHHHHH--HHcCcCCEEEEE
Confidence 9999997664 4456666665 489999999886
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=4e-09 Score=98.95 Aligned_cols=103 Identities=10% Similarity=0.024 Sum_probs=79.7
Q ss_pred CCCeEEEECCCcchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
...+|||+|||+|.++..+++.. ..+++++|+ +.++ +.+++++...++.++++++.+|+.+.+ ...||
T Consensus 169 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~~~---------p~~~D 237 (332)
T 3i53_A 169 ALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPA-SAAHRRFLDTGLSGRAQVVVGSFFDPL---------PAGAG 237 (332)
T ss_dssp GGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHH-HHHHHHHHHTTCTTTEEEEECCTTSCC---------CCSCS
T ss_pred CCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHH-HHHHHhhhhcCcCcCeEEecCCCCCCC---------CCCCc
Confidence 35799999999999999887753 347999999 9998 999999999998888999999986321 13799
Q ss_pred EEEECCCCC-Ccc--HHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 234 YMSVTPPYT-AVD--YEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 234 lV~~dPPy~-~~~--~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
+|++.--.+ ..+ ...+++.+. +.|+|||++++...
T Consensus 238 ~v~~~~vlh~~~~~~~~~~l~~~~--~~L~pgG~l~i~e~ 275 (332)
T 3i53_A 238 GYVLSAVLHDWDDLSAVAILRRCA--EAAGSGGVVLVIEA 275 (332)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHH--HHHTTTCEEEEEEC
T ss_pred EEEEehhhccCCHHHHHHHHHHHH--HhcCCCCEEEEEee
Confidence 999854332 222 245566554 47999999988654
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.92 E-value=2e-09 Score=100.22 Aligned_cols=94 Identities=21% Similarity=0.224 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCC---EEEEEeCCHHHHHHHHHHhHHHhCCCCceEE
Q 021116 134 EVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCS---EVHFVEMDPWVVSNVLIPNLEWTGFLDVSSI 210 (317)
Q Consensus 134 ~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~---~V~aVDin~~al~~~ar~N~~~~gl~~~v~i 210 (317)
..+.+.+.+.+.. .++.+|||+|||+|.++..++.++.. +|++||+|+.++ +.+++|. .+++++
T Consensus 28 ~~i~~~iv~~~~~-------~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l-~~a~~~~-----~~~v~~ 94 (279)
T 3uzu_A 28 HGVIDAIVAAIRP-------ERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLI-GRLEQRF-----GELLEL 94 (279)
T ss_dssp HHHHHHHHHHHCC-------CTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHH-HHHHHHH-----GGGEEE
T ss_pred HHHHHHHHHhcCC-------CCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHH-HHHHHhc-----CCCcEE
Confidence 4566667676654 36789999999999999988877542 299999999999 9999983 246999
Q ss_pred EEecHHHHHHHHhhhcC-CCCCccEEEECCCCC
Q 021116 211 HTVRVETFLERAEQFVG-KDGPFDYMSVTPPYT 242 (317)
Q Consensus 211 i~gD~~~~l~~~~~~~~-~~~~fDlV~~dPPy~ 242 (317)
+++|+.++.- ..+.. .....+.|+.|+||.
T Consensus 95 i~~D~~~~~~--~~~~~~~~~~~~~vv~NlPY~ 125 (279)
T 3uzu_A 95 HAGDALTFDF--GSIARPGDEPSLRIIGNLPYN 125 (279)
T ss_dssp EESCGGGCCG--GGGSCSSSSCCEEEEEECCHH
T ss_pred EECChhcCCh--hHhcccccCCceEEEEccCcc
Confidence 9999987521 10000 001346899999996
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=7.2e-09 Score=95.50 Aligned_cols=112 Identities=11% Similarity=0.114 Sum_probs=74.5
Q ss_pred CCCeEEEECCCcchHHHHHH----HcC-CCEE--EEEeCCHHHHHHHHHHhHHHh-CCCC-ceEEEEecHHHHHHHHhhh
Q 021116 155 RPGRWLDLYSGTGSVGIEAI----SRG-CSEV--HFVEMDPWVVSNVLIPNLEWT-GFLD-VSSIHTVRVETFLERAEQF 225 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaa----s~G-a~~V--~aVDin~~al~~~ar~N~~~~-gl~~-~v~ii~gD~~~~l~~~~~~ 225 (317)
++.+|||+|||+|.++..++ .++ ..+| +++|.++.++ +.|+++++.. ++.+ ++.+..+|+.++..... .
T Consensus 52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml-~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~ 129 (292)
T 2aot_A 52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQI-AKYKELVAKTSNLENVKFAWHKETSSEYQSRML-E 129 (292)
T ss_dssp SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHH-HHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHH-T
T ss_pred CCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHH-HHHHHHHHhccCCCcceEEEEecchhhhhhhhc-c
Confidence 46799999999998775432 222 2334 9999999999 9999988653 4433 23445677765432110 0
Q ss_pred cCCCCCccEEEECCCC-CCccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 226 VGKDGPFDYMSVTPPY-TAVDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 226 ~~~~~~fDlV~~dPPy-~~~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
+..+++||+|++.--. +..+....++.+. ++|+|||++++...
T Consensus 130 ~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~--r~LkpgG~l~i~~~ 173 (292)
T 2aot_A 130 KKELQKWDFIHMIQMLYYVKDIPATLKFFH--SLLGTNAKMLIIVV 173 (292)
T ss_dssp TTCCCCEEEEEEESCGGGCSCHHHHHHHHH--HTEEEEEEEEEEEE
T ss_pred ccCCCceeEEEEeeeeeecCCHHHHHHHHH--HHcCCCcEEEEEEe
Confidence 0124789999986332 2345677787776 59999999998643
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=98.91 E-value=2.3e-09 Score=108.24 Aligned_cols=102 Identities=20% Similarity=0.165 Sum_probs=76.2
Q ss_pred CCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHc---C-----------CCEEEEEeCCHHHHHHHH
Q 021116 130 RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR---G-----------CSEVHFVEMDPWVVSNVL 195 (317)
Q Consensus 130 rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~---G-----------a~~V~aVDin~~al~~~a 195 (317)
..|...|.+.+.+++.+ ..+.+|+|++||||++-+++... . ...++|+|+++.++ .+|
T Consensus 199 fyTP~~Vv~lmv~l~~p-------~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~-~la 270 (530)
T 3ufb_A 199 FYTPRPVVRFMVEVMDP-------QLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPY-LLV 270 (530)
T ss_dssp CCCCHHHHHHHHHHHCC-------CTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHH-HHH
T ss_pred ECCcHHHHHHHHHhhcc-------CCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHH-HHH
Confidence 45667788888888865 35779999999999999877531 1 13599999999998 999
Q ss_pred HHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCC
Q 021116 196 IPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTA 243 (317)
Q Consensus 196 r~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~ 243 (317)
+-|+-..|+.. ..+..+|........ .....+||+|+.||||+.
T Consensus 271 ~mNl~lhg~~~-~~I~~~dtL~~~~~~---~~~~~~fD~Il~NPPf~~ 314 (530)
T 3ufb_A 271 QMNLLLHGLEY-PRIDPENSLRFPLRE---MGDKDRVDVILTNPPFGG 314 (530)
T ss_dssp HHHHHHHTCSC-CEEECSCTTCSCGGG---CCGGGCBSEEEECCCSSC
T ss_pred HHHHHhcCCcc-ccccccccccCchhh---hcccccceEEEecCCCCc
Confidence 99999999864 567788865421000 011257999999999974
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=98.91 E-value=2.6e-09 Score=100.80 Aligned_cols=104 Identities=11% Similarity=0.087 Sum_probs=80.1
Q ss_pred CCeEEEECCCcchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccE
Q 021116 156 PGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (317)
Q Consensus 156 ~~rVLDlgcGtG~l~Ieaas~G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDl 234 (317)
+.+|||+|||+|.++..+++.. ..+++++|+ +.++ +.++++++..++.++++++.+|+.+.... ..+.||+
T Consensus 180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~~~~~------~~~~~D~ 251 (352)
T 3mcz_A 180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTR-DAARKTIHAHDLGGRVEFFEKNLLDARNF------EGGAADV 251 (352)
T ss_dssp CCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGH-HHHHHHHHHTTCGGGEEEEECCTTCGGGG------TTCCEEE
T ss_pred CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHH-HHHHHHHHhcCCCCceEEEeCCcccCccc------CCCCccE
Confidence 7899999999999999887763 358999999 8898 99999999999888899999998764210 1356999
Q ss_pred EEECCCCCCcc---HHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 235 MSVTPPYTAVD---YEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 235 V~~dPPy~~~~---~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
|++.-..+... ...+++.+. +.|+|||++++..
T Consensus 252 v~~~~vlh~~~~~~~~~~l~~~~--~~L~pgG~l~i~e 287 (352)
T 3mcz_A 252 VMLNDCLHYFDAREAREVIGHAA--GLVKPGGALLILT 287 (352)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHH--HTEEEEEEEEEEE
T ss_pred EEEecccccCCHHHHHHHHHHHH--HHcCCCCEEEEEE
Confidence 99864433212 245555554 5899999998765
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=98.91 E-value=4.2e-09 Score=95.25 Aligned_cols=96 Identities=8% Similarity=0.054 Sum_probs=71.7
Q ss_pred CCCeEEEECCCcchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~-Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
++.+|||+|||+|.++..++.. +..+|+++|+++.++ +.|+++. .+++++.+|+.+. +..+++||
T Consensus 85 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~-~~a~~~~------~~~~~~~~d~~~~-------~~~~~~fD 150 (269)
T 1p91_A 85 KATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAI-KAAAKRY------PQVTFCVASSHRL-------PFSDTSMD 150 (269)
T ss_dssp TCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHH-HHHHHHC------TTSEEEECCTTSC-------SBCTTCEE
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHH-HHHHHhC------CCcEEEEcchhhC-------CCCCCcee
Confidence 5789999999999999988876 234899999999999 8988764 2378899997653 12346899
Q ss_pred EEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCCC
Q 021116 234 YMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 234 lV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~ 272 (317)
+|++.... .. ++.+. ++|+|||++++..+..
T Consensus 151 ~v~~~~~~--~~----l~~~~--~~L~pgG~l~~~~~~~ 181 (269)
T 1p91_A 151 AIIRIYAP--CK----AEELA--RVVKPGGWVITATPGP 181 (269)
T ss_dssp EEEEESCC--CC----HHHHH--HHEEEEEEEEEEEECT
T ss_pred EEEEeCCh--hh----HHHHH--HhcCCCcEEEEEEcCH
Confidence 99975321 12 33333 3789999999887644
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.91 E-value=2.1e-09 Score=100.70 Aligned_cols=101 Identities=12% Similarity=0.009 Sum_probs=78.7
Q ss_pred CeEEEECCCcchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEE
Q 021116 157 GRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYM 235 (317)
Q Consensus 157 ~rVLDlgcGtG~l~Ieaas~G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV 235 (317)
.+|||+|||+|.++..++... ..+++++|+ +.++ +.+++|+...++.++++++.+|+.+.+ .+.||+|
T Consensus 169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~~~---------~~~~D~v 237 (334)
T 2ip2_A 169 RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSL-GVARDNLSSLLAGERVSLVGGDMLQEV---------PSNGDIY 237 (334)
T ss_dssp CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCT-HHHHHHTHHHHHTTSEEEEESCTTTCC---------CSSCSEE
T ss_pred CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHH-HHHHHHHhhcCCCCcEEEecCCCCCCC---------CCCCCEE
Confidence 899999999999999887753 348999999 9998 999999988887778999999986521 2579999
Q ss_pred EECCCCC-Ccc--HHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 236 SVTPPYT-AVD--YEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 236 ~~dPPy~-~~~--~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
++.-..+ ..+ ...+++.+. +.|+|||++++...
T Consensus 238 ~~~~vl~~~~~~~~~~~l~~~~--~~L~pgG~l~i~e~ 273 (334)
T 2ip2_A 238 LLSRIIGDLDEAASLRLLGNCR--EAMAGDGRVVVIER 273 (334)
T ss_dssp EEESCGGGCCHHHHHHHHHHHH--HHSCTTCEEEEEEC
T ss_pred EEchhccCCCHHHHHHHHHHHH--HhcCCCCEEEEEEe
Confidence 9865443 222 235555554 47999999988754
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=2.2e-09 Score=103.73 Aligned_cols=101 Identities=14% Similarity=0.138 Sum_probs=73.0
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEE-EecHHHHHHHHhhhcCCCCCcc
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH-TVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii-~gD~~~~l~~~~~~~~~~~~fD 233 (317)
++.+|||+|||+|.++..++..|. +|+++|+++.++ +.|+++ ++.....++ ..++.++ .. .+++||
T Consensus 107 ~~~~VLDiGcG~G~~~~~l~~~g~-~v~gvD~s~~~~-~~a~~~----~~~~~~~~~~~~~~~~l-~~------~~~~fD 173 (416)
T 4e2x_A 107 PDPFIVEIGCNDGIMLRTIQEAGV-RHLGFEPSSGVA-AKAREK----GIRVRTDFFEKATADDV-RR------TEGPAN 173 (416)
T ss_dssp SSCEEEEETCTTTTTHHHHHHTTC-EEEEECCCHHHH-HHHHTT----TCCEECSCCSHHHHHHH-HH------HHCCEE
T ss_pred CCCEEEEecCCCCHHHHHHHHcCC-cEEEECCCHHHH-HHHHHc----CCCcceeeechhhHhhc-cc------CCCCEE
Confidence 578999999999999998888876 799999999998 888876 443211122 2333332 21 137899
Q ss_pred EEEECCCC-CCccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 234 YMSVTPPY-TAVDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 234 lV~~dPPy-~~~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
+|++.--+ +..+....++.+. ++|+|||+++++.+
T Consensus 174 ~I~~~~vl~h~~d~~~~l~~~~--r~LkpgG~l~i~~~ 209 (416)
T 4e2x_A 174 VIYAANTLCHIPYVQSVLEGVD--ALLAPDGVFVFEDP 209 (416)
T ss_dssp EEEEESCGGGCTTHHHHHHHHH--HHEEEEEEEEEEEE
T ss_pred EEEECChHHhcCCHHHHHHHHH--HHcCCCeEEEEEeC
Confidence 99987543 2335667777775 48999999999865
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=4.7e-09 Score=106.42 Aligned_cols=76 Identities=21% Similarity=0.241 Sum_probs=65.2
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccE
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDl 234 (317)
++.+|||+|||+|.++..++++|+ +|+|||.++.++ +.|+..+...|.. ++++.++|+.++.... ..++||+
T Consensus 66 ~~~~vLDvGCG~G~~~~~la~~ga-~V~giD~~~~~i-~~a~~~a~~~~~~-~~~~~~~~~~~~~~~~-----~~~~fD~ 137 (569)
T 4azs_A 66 RPLNVLDLGCAQGFFSLSLASKGA-TIVGIDFQQENI-NVCRALAEENPDF-AAEFRVGRIEEVIAAL-----EEGEFDL 137 (569)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHHHTSTTS-EEEEEECCHHHHHHHC-----CTTSCSE
T ss_pred CCCeEEEECCCCcHHHHHHHhCCC-EEEEECCCHHHH-HHHHHHHHhcCCC-ceEEEECCHHHHhhhc-----cCCCccE
Confidence 467999999999999999999987 699999999999 9999999877743 3899999999876543 2468999
Q ss_pred EEEC
Q 021116 235 MSVT 238 (317)
Q Consensus 235 V~~d 238 (317)
|++-
T Consensus 138 v~~~ 141 (569)
T 4azs_A 138 AIGL 141 (569)
T ss_dssp EEEE
T ss_pred EEEC
Confidence 9985
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=8.8e-09 Score=99.34 Aligned_cols=83 Identities=17% Similarity=0.179 Sum_probs=69.3
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHhHHHhCCC-----CceEEEEecHHHHHHHHhhhcC
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGC-SEVHFVEMDPWVVSNVLIPNLEWTGFL-----DVSSIHTVRVETFLERAEQFVG 227 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga-~~V~aVDin~~al~~~ar~N~~~~gl~-----~~v~ii~gD~~~~l~~~~~~~~ 227 (317)
.+|.+|||+|||.|+-++.++..+. .+|+++|+++..+ +.+++|++.++.. +++.+...|+..+....
T Consensus 147 ~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~-~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~----- 220 (359)
T 4fzv_A 147 QPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRI-ARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELE----- 220 (359)
T ss_dssp CTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHH-HHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHS-----
T ss_pred CCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHH-HHHHHHHHHhhhhhhccCCceEEEeCchhhcchhc-----
Confidence 4689999999999999988777653 4799999999999 9999999998764 46888999988765432
Q ss_pred CCCCccEEEECCCCCC
Q 021116 228 KDGPFDYMSVTPPYTA 243 (317)
Q Consensus 228 ~~~~fDlV~~dPPy~~ 243 (317)
.+.||.|++|+|...
T Consensus 221 -~~~fD~VLlDaPCSg 235 (359)
T 4fzv_A 221 -GDTYDRVLVDVPCTT 235 (359)
T ss_dssp -TTCEEEEEEECCCCC
T ss_pred -cccCCEEEECCccCC
Confidence 468999999999853
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=98.88 E-value=8.5e-09 Score=90.72 Aligned_cols=94 Identities=17% Similarity=0.176 Sum_probs=72.4
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccE
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDl 234 (317)
++.+|||+|||+|.++..++.. +++|+++.++ +.+++| +++++.+|+.+. +...++||+
T Consensus 47 ~~~~vLDiG~G~G~~~~~l~~~-----~~vD~s~~~~-~~a~~~--------~~~~~~~d~~~~-------~~~~~~fD~ 105 (219)
T 1vlm_A 47 PEGRGVEIGVGTGRFAVPLKIK-----IGVEPSERMA-EIARKR--------GVFVLKGTAENL-------PLKDESFDF 105 (219)
T ss_dssp CSSCEEEETCTTSTTHHHHTCC-----EEEESCHHHH-HHHHHT--------TCEEEECBTTBC-------CSCTTCEEE
T ss_pred CCCcEEEeCCCCCHHHHHHHHH-----hccCCCHHHH-HHHHhc--------CCEEEEcccccC-------CCCCCCeeE
Confidence 3789999999999999876543 9999999999 999887 267889997653 123468999
Q ss_pred EEECCCCC-CccHHHHHHHHHHcCCcCCCeEEEEEeCC
Q 021116 235 MSVTPPYT-AVDYEVLMAQISKSALVGKDSFIVVEYPL 271 (317)
Q Consensus 235 V~~dPPy~-~~~~~~~l~~L~~~~lLkpgG~ivv~~~~ 271 (317)
|++.-.+. ..+....++.+. ++|+|||++++....
T Consensus 106 v~~~~~l~~~~~~~~~l~~~~--~~L~pgG~l~i~~~~ 141 (219)
T 1vlm_A 106 ALMVTTICFVDDPERALKEAY--RILKKGGYLIVGIVD 141 (219)
T ss_dssp EEEESCGGGSSCHHHHHHHHH--HHEEEEEEEEEEEEC
T ss_pred EEEcchHhhccCHHHHHHHHH--HHcCCCcEEEEEEeC
Confidence 99875432 235566777765 489999999987654
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=98.87 E-value=1e-08 Score=91.45 Aligned_cols=105 Identities=11% Similarity=-0.064 Sum_probs=73.6
Q ss_pred CCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCC--CCceEEEEecHHHH--------------H
Q 021116 156 PGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGF--LDVSSIHTVRVETF--------------L 219 (317)
Q Consensus 156 ~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl--~~~v~ii~gD~~~~--------------l 219 (317)
.++||++||| .-++.+++....+|+.||.|++.+ +.|++|++.+|+ .++++++.+|+.+. +
T Consensus 31 a~~VLEiGtG--ySTl~lA~~~~g~VvtvE~d~~~~-~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~l 107 (202)
T 3cvo_A 31 AEVILEYGSG--GSTVVAAELPGKHVTSVESDRAWA-RMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRSY 107 (202)
T ss_dssp CSEEEEESCS--HHHHHHHTSTTCEEEEEESCHHHH-HHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGGT
T ss_pred CCEEEEECch--HHHHHHHHcCCCEEEEEeCCHHHH-HHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhhH
Confidence 5799999985 566666554246899999999998 999999999998 78899999996432 1
Q ss_pred HHHh-hh-cC-CCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 220 ERAE-QF-VG-KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 220 ~~~~-~~-~~-~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
.... .. .. ..++||+||+|..+.. ..+.... ++|++||+|++..
T Consensus 108 ~~~~~~i~~~~~~~~fDlIfIDg~k~~----~~~~~~l--~~l~~GG~Iv~DN 154 (202)
T 3cvo_A 108 PDYPLAVWRTEGFRHPDVVLVDGRFRV----GCALATA--FSITRPVTLLFDD 154 (202)
T ss_dssp THHHHGGGGCTTCCCCSEEEECSSSHH----HHHHHHH--HHCSSCEEEEETT
T ss_pred HHHhhhhhccccCCCCCEEEEeCCCch----hHHHHHH--HhcCCCeEEEEeC
Confidence 1110 00 01 1367999999975321 2222222 3689999997765
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=98.87 E-value=3.8e-08 Score=90.84 Aligned_cols=109 Identities=15% Similarity=0.061 Sum_probs=77.6
Q ss_pred CCeEEEECCCc---chHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHH------hhh
Q 021116 156 PGRWLDLYSGT---GSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA------EQF 225 (317)
Q Consensus 156 ~~rVLDlgcGt---G~l~Ieaas~G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~------~~~ 225 (317)
..+|||+|||+ |.+...+.... ..+|++||+++.++ +.|++++.. .++++++++|+.+....+ ..+
T Consensus 78 ~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l-~~Ar~~~~~---~~~v~~~~~D~~~~~~~~~~~~~~~~~ 153 (274)
T 2qe6_A 78 ISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVL-THGRALLAK---DPNTAVFTADVRDPEYILNHPDVRRMI 153 (274)
T ss_dssp CCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHH-HHHHHHHTT---CTTEEEEECCTTCHHHHHHSHHHHHHC
T ss_pred CCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHH-HHHHHhcCC---CCCeEEEEeeCCCchhhhccchhhccC
Confidence 47999999999 98876555432 35899999999999 999998743 246999999987532100 011
Q ss_pred cCCCCCccEEEECCCCCC-c--cHHHHHHHHHHcCCcCCCeEEEEEeCCC
Q 021116 226 VGKDGPFDYMSVTPPYTA-V--DYEVLMAQISKSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 226 ~~~~~~fDlV~~dPPy~~-~--~~~~~l~~L~~~~lLkpgG~ivv~~~~~ 272 (317)
...+||+|++.--.+. . ....+++.+. +.|+|||++++.+...
T Consensus 154 --d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~--~~L~pGG~l~i~~~~~ 199 (274)
T 2qe6_A 154 --DFSRPAAIMLVGMLHYLSPDVVDRVVGAYR--DALAPGSYLFMTSLVD 199 (274)
T ss_dssp --CTTSCCEEEETTTGGGSCTTTHHHHHHHHH--HHSCTTCEEEEEEEBC
T ss_pred --CCCCCEEEEEechhhhCCcHHHHHHHHHHH--HhCCCCcEEEEEEecC
Confidence 1247999998754332 1 2566777775 4799999999887643
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=98.86 E-value=5.5e-09 Score=95.80 Aligned_cols=92 Identities=13% Similarity=0.085 Sum_probs=67.2
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCE--EEEEeCCHHHHHHHHHHhHHHhCCCCceEEEE
Q 021116 135 VVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSE--VHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHT 212 (317)
Q Consensus 135 ~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~--V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~ 212 (317)
.+.+.+.+.+.. .++.+|||+|||+|.++. + .++ .+ |++||+|+.++ +.+++|++.. +++++++
T Consensus 8 ~i~~~iv~~~~~-------~~~~~VLEIG~G~G~lt~-l-~~~-~~~~v~avEid~~~~-~~a~~~~~~~---~~v~~i~ 73 (252)
T 1qyr_A 8 FVIDSIVSAINP-------QKGQAMVEIGPGLAALTE-P-VGE-RLDQLTVIELDRDLA-ARLQTHPFLG---PKLTIYQ 73 (252)
T ss_dssp HHHHHHHHHHCC-------CTTCCEEEECCTTTTTHH-H-HHT-TCSCEEEECCCHHHH-HHHHTCTTTG---GGEEEEC
T ss_pred HHHHHHHHhcCC-------CCcCEEEEECCCCcHHHH-h-hhC-CCCeEEEEECCHHHH-HHHHHHhccC---CceEEEE
Confidence 455566666543 357899999999999999 5 444 46 99999999999 9999987643 3599999
Q ss_pred ecHHHH-HHHHhhhcCCCCCccEEEECCCCCC
Q 021116 213 VRVETF-LERAEQFVGKDGPFDYMSVTPPYTA 243 (317)
Q Consensus 213 gD~~~~-l~~~~~~~~~~~~fDlV~~dPPy~~ 243 (317)
+|+.++ +..... ..+..|.|+.|+||..
T Consensus 74 ~D~~~~~~~~~~~---~~~~~~~vvsNlPY~i 102 (252)
T 1qyr_A 74 QDAMTFNFGELAE---KMGQPLRVFGNLPYNI 102 (252)
T ss_dssp SCGGGCCHHHHHH---HHTSCEEEEEECCTTT
T ss_pred CchhhCCHHHhhc---ccCCceEEEECCCCCc
Confidence 999874 221100 0024589999999974
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.85 E-value=1.6e-08 Score=87.25 Aligned_cols=102 Identities=10% Similarity=0.015 Sum_probs=67.2
Q ss_pred CCCeEEEECCCcchHHHHHHHc-C--CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHH------------
Q 021116 155 RPGRWLDLYSGTGSVGIEAISR-G--CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL------------ 219 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~-G--a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l------------ 219 (317)
++.+|||+|||+|.+++.++.+ + ..+|+++|+++.+ . . ++++++++|+.+..
T Consensus 22 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~--~----------~-~~v~~~~~d~~~~~~~~~~~~~~i~~ 88 (201)
T 2plw_A 22 KNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD--P----------I-PNVYFIQGEIGKDNMNNIKNINYIDN 88 (201)
T ss_dssp TTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC--C----------C-TTCEEEECCTTTTSSCCC--------
T ss_pred CCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC--C----------C-CCceEEEccccchhhhhhcccccccc
Confidence 5789999999999999988875 3 3589999999832 1 1 24778888876532
Q ss_pred -------HHHhhhcCCCCCccEEEECCCCCCc-----cHH-------HHHHHHHHcCCcCCCeEEEEEeCCC
Q 021116 220 -------ERAEQFVGKDGPFDYMSVTPPYTAV-----DYE-------VLMAQISKSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 220 -------~~~~~~~~~~~~fDlV~~dPPy~~~-----~~~-------~~l~~L~~~~lLkpgG~ivv~~~~~ 272 (317)
..... .....+||+|++|++.+.. +.. .+++.+ .++|+|||++++.....
T Consensus 89 ~~~~~~~~~~~~-~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~--~~~LkpgG~lv~~~~~~ 157 (201)
T 2plw_A 89 MNNNSVDYKLKE-ILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFM--EQYINIGGTYIVKMYLG 157 (201)
T ss_dssp ---CHHHHHHHH-HHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHH--HHHEEEEEEEEEEEECS
T ss_pred ccchhhHHHHHh-hcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHH--HHHccCCCEEEEEEeCC
Confidence 00000 0124689999999765431 111 123333 35899999999866543
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.81 E-value=3.8e-09 Score=90.62 Aligned_cols=105 Identities=11% Similarity=-0.039 Sum_probs=68.8
Q ss_pred CCCCeEEEECCCcchHHHHHHHc-CC---------CEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEE-EecHHHHHHH-
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISR-GC---------SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH-TVRVETFLER- 221 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~-Ga---------~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii-~gD~~~~l~~- 221 (317)
.++.+|||+|||+|.+++.++++ |. .+|+++|+++.+ .+ ++++++ ++|+.+....
T Consensus 21 ~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~------------~~-~~~~~~~~~d~~~~~~~~ 87 (196)
T 2nyu_A 21 RPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF------------PL-EGATFLCPADVTDPRTSQ 87 (196)
T ss_dssp CTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC------------CC-TTCEEECSCCTTSHHHHH
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc------------cC-CCCeEEEeccCCCHHHHH
Confidence 35789999999999999988876 54 689999999842 11 236778 8886543211
Q ss_pred -HhhhcCCCCCccEEEECCCCCC-cc----H-------HHHHHHHHHcCCcCCCeEEEEEeCCCCC
Q 021116 222 -AEQFVGKDGPFDYMSVTPPYTA-VD----Y-------EVLMAQISKSALVGKDSFIVVEYPLRTD 274 (317)
Q Consensus 222 -~~~~~~~~~~fDlV~~dPPy~~-~~----~-------~~~l~~L~~~~lLkpgG~ivv~~~~~~~ 274 (317)
... ...+.+||+|++|++... +. . ...++.+ .++|+|||++++.......
T Consensus 88 ~~~~-~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~LkpgG~lv~~~~~~~~ 150 (196)
T 2nyu_A 88 RILE-VLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVT--PDILQPGGTFLCKTWAGSQ 150 (196)
T ss_dssp HHHH-HSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHH--HHHEEEEEEEEEEECCSGG
T ss_pred HHHH-hcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHH--HHHhcCCCEEEEEecCCcc
Confidence 000 011357999999985432 11 1 2333333 3589999999998654433
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.79 E-value=2.3e-10 Score=103.53 Aligned_cols=116 Identities=10% Similarity=0.094 Sum_probs=82.0
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecH
Q 021116 136 VKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRV 215 (317)
Q Consensus 136 v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~ 215 (317)
+.+.+.+.+.. .++.+|||+|||+|.++..++..+ .+|+++|+|+.++ +.+++|++ + .++++++++|+
T Consensus 17 ~~~~i~~~~~~-------~~~~~VLDiG~G~G~~~~~l~~~~-~~v~~id~~~~~~-~~a~~~~~--~-~~~v~~~~~D~ 84 (245)
T 1yub_A 17 VLNQIIKQLNL-------KETDTVYEIGTGKGHLTTKLAKIS-KQVTSIELDSHLF-NLSSEKLK--L-NTRVTLIHQDI 84 (245)
T ss_dssp THHHHHHHCCC-------CSSEEEEECSCCCSSCSHHHHHHS-SEEEESSSSCSSS-SSSSCTTT--T-CSEEEECCSCC
T ss_pred HHHHHHHhcCC-------CCCCEEEEEeCCCCHHHHHHHHhC-CeEEEEECCHHHH-HHHHHHhc--c-CCceEEEECCh
Confidence 44455555432 357899999999999999988887 5899999999998 99998876 2 35699999998
Q ss_pred HHHHHHHhhhcCC-CCCccEEEECCCCCCcc--HHHHHHH-------H----H-HcCCcCCCeEEEEEeCC
Q 021116 216 ETFLERAEQFVGK-DGPFDYMSVTPPYTAVD--YEVLMAQ-------I----S-KSALVGKDSFIVVEYPL 271 (317)
Q Consensus 216 ~~~l~~~~~~~~~-~~~fDlV~~dPPy~~~~--~~~~l~~-------L----~-~~~lLkpgG~ivv~~~~ 271 (317)
.++. .. +++| .|++||||.... ...++.. + . ..++|++||.+++....
T Consensus 85 ~~~~-------~~~~~~f-~vv~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~~~ 147 (245)
T 1yub_A 85 LQFQ-------FPNKQRY-KIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLLHT 147 (245)
T ss_dssp TTTT-------CCCSSEE-EEEEECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHTTT
T ss_pred hhcC-------cccCCCc-EEEEeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhhee
Confidence 7642 11 2468 899999997532 1222210 0 1 23578888887765543
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=1.8e-08 Score=93.68 Aligned_cols=119 Identities=14% Similarity=0.121 Sum_probs=76.8
Q ss_pred CCeEEEECCCcch----HHHHHHHc-C----CCEEEEEeCCHHHHHHHHHHhHHH---------------h--------C
Q 021116 156 PGRWLDLYSGTGS----VGIEAISR-G----CSEVHFVEMDPWVVSNVLIPNLEW---------------T--------G 203 (317)
Q Consensus 156 ~~rVLDlgcGtG~----l~Ieaas~-G----a~~V~aVDin~~al~~~ar~N~~~---------------~--------g 203 (317)
..+|||+|||||. +++.++.. + ..+|+|+|+|+.++ +.|++|+.. + |
T Consensus 106 ~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L-~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 106 EYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVL-EKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp CEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHH-HHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHH-HHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 5799999999997 66655443 3 13799999999999 999998510 0 0
Q ss_pred -------CCCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCc---cHHHHHHHHHHcCCcCCCeEEEEEeCCCC
Q 021116 204 -------FLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAV---DYEVLMAQISKSALVGKDSFIVVEYPLRT 273 (317)
Q Consensus 204 -------l~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~---~~~~~l~~L~~~~lLkpgG~ivv~~~~~~ 273 (317)
+.++++|.++|+.+.. + + ..++||+|++---...- ...++++.+. +.|+|||++++.+...
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~~~--~---~-~~~~fDlI~crnvliyf~~~~~~~vl~~~~--~~L~pgG~L~lg~sE~- 255 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLEKQ--Y---N-VPGPFDAIFCRNVMIYFDKTTQEDILRRFV--PLLKPDGLLFAGHSEN- 255 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTCSS--C---C-CCCCEEEEEECSSGGGSCHHHHHHHHHHHG--GGEEEEEEEEECTTCC-
T ss_pred ceeechhhcccCeEEecccCCCC--C---C-cCCCeeEEEECCchHhCCHHHHHHHHHHHH--HHhCCCcEEEEEeccc-
Confidence 1135899999986520 0 0 13579999994211111 1245555554 5899999999976543
Q ss_pred CccccCCCeEEE
Q 021116 274 DMLDTCGCLVKI 285 (317)
Q Consensus 274 ~l~~~~~~~~~~ 285 (317)
+......|+.+
T Consensus 256 -~~~~~~~f~~~ 266 (274)
T 1af7_A 256 -FSNLVREFSLR 266 (274)
T ss_dssp -CTTTCTTEEEE
T ss_pred -ccccccCceEc
Confidence 32233556544
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=1.3e-09 Score=101.23 Aligned_cols=102 Identities=17% Similarity=0.005 Sum_probs=68.7
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHH-hCCCCceEEE--EecHHHHHHHHhhhcCCCC
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEW-TGFLDVSSIH--TVRVETFLERAEQFVGKDG 230 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~-~gl~~~v~ii--~gD~~~~l~~~~~~~~~~~ 230 (317)
.++.+|||+|||+|.++..++.+ .+|++||+++ ++ ..++++... .....+++++ ++|+.++ .++
T Consensus 81 ~~g~~VLDlGcGtG~~s~~la~~--~~V~gVD~s~-m~-~~a~~~~~~~~~~~~~v~~~~~~~D~~~l---------~~~ 147 (276)
T 2wa2_A 81 ELKGTVVDLGCGRGSWSYYAASQ--PNVREVKAYT-LG-TSGHEKPRLVETFGWNLITFKSKVDVTKM---------EPF 147 (276)
T ss_dssp CCCEEEEEESCTTCHHHHHHHTS--TTEEEEEEEC-CC-CTTSCCCCCCCCTTGGGEEEECSCCGGGC---------CCC
T ss_pred CCCCEEEEeccCCCHHHHHHHHc--CCEEEEECch-hh-hhhhhchhhhhhcCCCeEEEeccCcHhhC---------CCC
Confidence 35789999999999999988877 4699999999 54 444332111 1111257888 8998763 246
Q ss_pred CccEEEECCCCCCccH----H---HHHHHHHHcCCcCCCe--EEEEEeC
Q 021116 231 PFDYMSVTPPYTAVDY----E---VLMAQISKSALVGKDS--FIVVEYP 270 (317)
Q Consensus 231 ~fDlV~~dPPy~~~~~----~---~~l~~L~~~~lLkpgG--~ivv~~~ 270 (317)
+||+|++|..+..+.. . ..++.+ .++|+||| .+++...
T Consensus 148 ~fD~Vvsd~~~~~~~~~~d~~~~l~~L~~~--~r~LkpGG~~~~v~~~~ 194 (276)
T 2wa2_A 148 QADTVLCDIGESNPTAAVEASRTLTVLNVI--SRWLEYNQGCGFCVKVL 194 (276)
T ss_dssp CCSEEEECCCCCCSCHHHHHHHHHHHHHHH--HHHHHHSTTCEEEEEES
T ss_pred CcCEEEECCCcCCCchhhhHHHHHHHHHHH--HHHhccCCCcEEEEEeC
Confidence 8999999976322221 1 123333 25899999 8887544
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=98.75 E-value=2.1e-08 Score=103.70 Aligned_cols=105 Identities=10% Similarity=-0.016 Sum_probs=72.7
Q ss_pred CCeEEEECCCcchHHHH---HHH-cC----------CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHH
Q 021116 156 PGRWLDLYSGTGSVGIE---AIS-RG----------CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER 221 (317)
Q Consensus 156 ~~rVLDlgcGtG~l~Ie---aas-~G----------a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~ 221 (317)
+..|||+|||+|.+... |++ .| +.+|+|||.|+.++ ..++... .||+.++|+++++|++++.--
T Consensus 410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~-~~l~~~~-~Ng~~d~VtVI~gd~eev~lp 487 (745)
T 3ua3_A 410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAI-VTLKYMN-VRTWKRRVTIIESDMRSLPGI 487 (745)
T ss_dssp EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHH-HHHHHHH-HHTTTTCSEEEESCGGGHHHH
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHH-HHHHHHH-hcCCCCeEEEEeCchhhcccc
Confidence 56899999999999643 332 12 23899999999887 5544433 489999999999999988421
Q ss_pred HhhhcCCCCCccEEEECCCCCCc---cHHHHHHHHHHcCCcCCCeEEE
Q 021116 222 AEQFVGKDGPFDYMSVTPPYTAV---DYEVLMAQISKSALVGKDSFIV 266 (317)
Q Consensus 222 ~~~~~~~~~~fDlV~~dPPy~~~---~~~~~l~~L~~~~lLkpgG~iv 266 (317)
.. ....++.|+|+....=..+ ...+.++.. .++|+|||+++
T Consensus 488 ~~--~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v--~r~Lkp~Gi~i 531 (745)
T 3ua3_A 488 AK--DRGFEQPDIIVSELLGSFGDNELSPECLDGV--TGFLKPTTISI 531 (745)
T ss_dssp HH--HTTCCCCSEEEECCCBTTBGGGSHHHHHHTT--GGGSCTTCEEE
T ss_pred cc--cCCCCcccEEEEeccccccchhccHHHHHHH--HHhCCCCcEEE
Confidence 00 0113689999998751122 234555544 36999999876
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=1e-08 Score=95.12 Aligned_cols=98 Identities=15% Similarity=0.106 Sum_probs=72.2
Q ss_pred CCCeEEEECCCcchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~-Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
...+|||||||+|.+++..+.. +..+++++|+|+.++ +.+++|+..+|+. .++...|...- ...+.||
T Consensus 132 ~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~l-e~a~~~l~~~g~~--~~~~v~D~~~~--------~p~~~~D 200 (281)
T 3lcv_B 132 RPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLV-GFVDEALTRLNVP--HRTNVADLLED--------RLDEPAD 200 (281)
T ss_dssp CCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHH-HHHHHHHHHTTCC--EEEEECCTTTS--------CCCSCCS
T ss_pred CCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHH-HHHHHHHHhcCCC--ceEEEeeeccc--------CCCCCcc
Confidence 3679999999999999987665 567999999999999 9999999999985 67777886532 1357899
Q ss_pred EEEECCCCCCccHH-----HHHHHHHHcCCcCCCeEEEEE
Q 021116 234 YMSVTPPYTAVDYE-----VLMAQISKSALVGKDSFIVVE 268 (317)
Q Consensus 234 lV~~dPPy~~~~~~-----~~l~~L~~~~lLkpgG~ivv~ 268 (317)
+|++.--+. .++ ..++.+. .|+++|+++..
T Consensus 201 vaL~lkti~--~Le~q~kg~g~~ll~---aL~~~~vvVSf 235 (281)
T 3lcv_B 201 VTLLLKTLP--CLETQQRGSGWEVID---IVNSPNIVVTF 235 (281)
T ss_dssp EEEETTCHH--HHHHHSTTHHHHHHH---HSSCSEEEEEE
T ss_pred hHHHHHHHH--HhhhhhhHHHHHHHH---HhCCCCEEEec
Confidence 999863111 111 2233332 47888876653
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=98.71 E-value=1.5e-09 Score=100.23 Aligned_cols=102 Identities=18% Similarity=0.039 Sum_probs=68.0
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHH-hCCCCceEEE--EecHHHHHHHHhhhcCCCC
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEW-TGFLDVSSIH--TVRVETFLERAEQFVGKDG 230 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~-~gl~~~v~ii--~gD~~~~l~~~~~~~~~~~ 230 (317)
.++.+|||+|||+|.++..++.+ .+|++||+++ ++ ..++++... .....+++++ ++|+.++ .++
T Consensus 73 ~~g~~VLDlGcGtG~~s~~la~~--~~V~gvD~s~-m~-~~a~~~~~~~~~~~~~v~~~~~~~D~~~l---------~~~ 139 (265)
T 2oxt_A 73 ELTGRVVDLGCGRGGWSYYAASR--PHVMDVRAYT-LG-VGGHEVPRITESYGWNIVKFKSRVDIHTL---------PVE 139 (265)
T ss_dssp CCCEEEEEESCTTSHHHHHHHTS--TTEEEEEEEC-CC-CSSCCCCCCCCBTTGGGEEEECSCCTTTS---------CCC
T ss_pred CCCCEEEEeCcCCCHHHHHHHHc--CcEEEEECch-hh-hhhhhhhhhhhccCCCeEEEecccCHhHC---------CCC
Confidence 35789999999999999988877 4699999999 43 333322110 0111147888 8898763 246
Q ss_pred CccEEEECCCCCCccH----H---HHHHHHHHcCCcCCCe--EEEEEeC
Q 021116 231 PFDYMSVTPPYTAVDY----E---VLMAQISKSALVGKDS--FIVVEYP 270 (317)
Q Consensus 231 ~fDlV~~dPPy~~~~~----~---~~l~~L~~~~lLkpgG--~ivv~~~ 270 (317)
+||+|++|.....+.. . ..++.+ .++|+||| .+++...
T Consensus 140 ~fD~V~sd~~~~~~~~~~d~~~~l~~L~~~--~r~LkpGG~~~fv~kv~ 186 (265)
T 2oxt_A 140 RTDVIMCDVGESSPKWSVESERTIKILELL--EKWKVKNPSADFVVKVL 186 (265)
T ss_dssp CCSEEEECCCCCCSCHHHHHHHHHHHHHHH--HHHHHHCTTCEEEEEES
T ss_pred CCcEEEEeCcccCCccchhHHHHHHHHHHH--HHHhccCCCeEEEEEeC
Confidence 8999999976322221 1 123333 25899999 8887554
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.71 E-value=1.9e-08 Score=87.77 Aligned_cols=105 Identities=10% Similarity=0.065 Sum_probs=73.8
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccE
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDl 234 (317)
++.+|||+|||+|.++..+ + .+|+++|+++. +++++.+|+.+. +...++||+
T Consensus 67 ~~~~vLDiG~G~G~~~~~l---~-~~v~~~D~s~~-----------------~~~~~~~d~~~~-------~~~~~~fD~ 118 (215)
T 2zfu_A 67 ASLVVADFGCGDCRLASSI---R-NPVHCFDLASL-----------------DPRVTVCDMAQV-------PLEDESVDV 118 (215)
T ss_dssp TTSCEEEETCTTCHHHHHC---C-SCEEEEESSCS-----------------STTEEESCTTSC-------SCCTTCEEE
T ss_pred CCCeEEEECCcCCHHHHHh---h-ccEEEEeCCCC-----------------CceEEEeccccC-------CCCCCCEeE
Confidence 5689999999999998765 2 46999999985 245678887652 123468999
Q ss_pred EEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCCCC--C---ccc--cCCCeEEEEEee
Q 021116 235 MSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRT--D---MLD--TCGCLVKIKDRR 289 (317)
Q Consensus 235 V~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~~--~---l~~--~~~~~~~~~~r~ 289 (317)
|++...++..+....++.+. ++|+|||++++...... + +.. ...||.++....
T Consensus 119 v~~~~~l~~~~~~~~l~~~~--~~L~~gG~l~i~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 178 (215)
T 2zfu_A 119 AVFCLSLMGTNIRDFLEEAN--RVLKPGGLLKVAEVSSRFEDVRTFLRAVTKLGFKIVSKDL 178 (215)
T ss_dssp EEEESCCCSSCHHHHHHHHH--HHEEEEEEEEEEECGGGCSCHHHHHHHHHHTTEEEEEEEC
T ss_pred EEEehhccccCHHHHHHHHH--HhCCCCeEEEEEEcCCCCCCHHHHHHHHHHCCCEEEEEec
Confidence 99987665556677777765 48999999998654321 1 111 146788776543
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=2.3e-08 Score=97.85 Aligned_cols=100 Identities=14% Similarity=0.058 Sum_probs=68.9
Q ss_pred CCCeEEEECCC------cchHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHH--HHHHhh
Q 021116 155 RPGRWLDLYSG------TGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF--LERAEQ 224 (317)
Q Consensus 155 ~~~rVLDlgcG------tG~l~Ieaas~--Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~--l~~~~~ 224 (317)
++.+|||+||| +|..++.+++. ...+|++||+++.+. . . .++++++++|+.+. .....
T Consensus 216 ~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~-~---------~-~~rI~fv~GDa~dlpf~~~l~- 283 (419)
T 3sso_A 216 QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH-V---------D-ELRIRTIQGDQNDAEFLDRIA- 283 (419)
T ss_dssp SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG-G---------C-BTTEEEEECCTTCHHHHHHHH-
T ss_pred CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh-h---------c-CCCcEEEEecccccchhhhhh-
Confidence 57899999999 78888876654 345899999999863 1 1 24699999998763 21110
Q ss_pred hcCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 225 FVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 225 ~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
...++||+|++|--....+....++.+. ++|+|||+++++.-
T Consensus 284 --~~d~sFDlVisdgsH~~~d~~~aL~el~--rvLKPGGvlVi~Dl 325 (419)
T 3sso_A 284 --RRYGPFDIVIDDGSHINAHVRTSFAALF--PHVRPGGLYVIEDM 325 (419)
T ss_dssp --HHHCCEEEEEECSCCCHHHHHHHHHHHG--GGEEEEEEEEEECG
T ss_pred --cccCCccEEEECCcccchhHHHHHHHHH--HhcCCCeEEEEEec
Confidence 0127899999985322223344455543 69999999999744
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=98.65 E-value=2.6e-08 Score=94.36 Aligned_cols=100 Identities=10% Similarity=-0.007 Sum_probs=72.6
Q ss_pred CCCeEEEECCCcchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
++.+|||+|||+|.++..+++.. ..+++++|+ +.++ . +++++..+..++++++.+|+.+.+ +.||
T Consensus 184 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~-~--~~~~~~~~~~~~v~~~~~d~~~~~----------p~~D 249 (348)
T 3lst_A 184 ATGTVADVGGGRGGFLLTVLREHPGLQGVLLDR-AEVV-A--RHRLDAPDVAGRWKVVEGDFLREV----------PHAD 249 (348)
T ss_dssp SSEEEEEETCTTSHHHHHHHHHCTTEEEEEEEC-HHHH-T--TCCCCCGGGTTSEEEEECCTTTCC----------CCCS
T ss_pred CCceEEEECCccCHHHHHHHHHCCCCEEEEecC-HHHh-h--cccccccCCCCCeEEEecCCCCCC----------CCCc
Confidence 46899999999999999887754 347999999 5555 4 556655667778999999986321 2899
Q ss_pred EEEECCCCC-CccH--HHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 234 YMSVTPPYT-AVDY--EVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 234 lV~~dPPy~-~~~~--~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
+|++.--.+ ..+. ..+++.+. +.|+|||++++...
T Consensus 250 ~v~~~~vlh~~~d~~~~~~L~~~~--~~LkpgG~l~i~e~ 287 (348)
T 3lst_A 250 VHVLKRILHNWGDEDSVRILTNCR--RVMPAHGRVLVIDA 287 (348)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHH--HTCCTTCEEEEEEC
T ss_pred EEEEehhccCCCHHHHHHHHHHHH--HhcCCCCEEEEEEe
Confidence 999864433 2222 35566554 58999999988654
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=9.3e-09 Score=96.77 Aligned_cols=103 Identities=12% Similarity=0.064 Sum_probs=67.9
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeC----CHHHHHHHHHHhHHHhCCCCceEEEEe-cHHHHHHHHhhhcCC
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEM----DPWVVSNVLIPNLEWTGFLDVSSIHTV-RVETFLERAEQFVGK 228 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDi----n~~al~~~ar~N~~~~gl~~~v~ii~g-D~~~~l~~~~~~~~~ 228 (317)
.++.+|||+|||+|.++..++.+ .+|++||+ ++..+ +.+. .+..+. ++++++++ |+.++ .
T Consensus 81 ~~g~~VLDlGcG~G~~s~~la~~--~~V~gvD~~~~~~~~~~-~~~~--~~~~~~-~~v~~~~~~D~~~l---------~ 145 (305)
T 2p41_A 81 TPEGKVVDLGCGRGGWSYYCGGL--KNVREVKGLTKGGPGHE-EPIP--MSTYGW-NLVRLQSGVDVFFI---------P 145 (305)
T ss_dssp CCCEEEEEETCTTSHHHHHHHTS--TTEEEEEEECCCSTTSC-CCCC--CCSTTG-GGEEEECSCCTTTS---------C
T ss_pred CCCCEEEEEcCCCCHHHHHHHhc--CCEEEEeccccCchhHH-HHHH--hhhcCC-CCeEEEeccccccC---------C
Confidence 35789999999999999988877 36999999 45333 2211 112222 45889998 87653 1
Q ss_pred CCCccEEEECCCCCCcc----HHHHHHHHHH-cCCcCCCeEEEEEeCC
Q 021116 229 DGPFDYMSVTPPYTAVD----YEVLMAQISK-SALVGKDSFIVVEYPL 271 (317)
Q Consensus 229 ~~~fDlV~~dPPy~~~~----~~~~l~~L~~-~~lLkpgG~ivv~~~~ 271 (317)
..+||+|++|.++..+. ....+..+.. .++|+|||.+++....
T Consensus 146 ~~~fD~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~~ 193 (305)
T 2p41_A 146 PERCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLN 193 (305)
T ss_dssp CCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESC
T ss_pred cCCCCEEEECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeCC
Confidence 36899999997654221 1212233321 2689999999986543
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=7.3e-08 Score=88.41 Aligned_cols=126 Identities=14% Similarity=0.101 Sum_probs=83.6
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccE
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDl 234 (317)
...+|||+|||+|.+++..+ +..+++++|+|+.++ +.+++|+..+|.. .++..+|..... ..++||+
T Consensus 105 ~p~~VLDlGCG~gpLal~~~--~~~~y~a~DId~~~i-~~ar~~~~~~g~~--~~~~v~D~~~~~--------~~~~~Dv 171 (253)
T 3frh_A 105 TPRRVLDIACGLNPLALYER--GIASVWGCDIHQGLG-DVITPFAREKDWD--FTFALQDVLCAP--------PAEAGDL 171 (253)
T ss_dssp CCSEEEEETCTTTHHHHHHT--TCSEEEEEESBHHHH-HHHHHHHHHTTCE--EEEEECCTTTSC--------CCCBCSE
T ss_pred CCCeEEEecCCccHHHHHhc--cCCeEEEEeCCHHHH-HHHHHHHHhcCCC--ceEEEeecccCC--------CCCCcch
Confidence 46799999999999999766 667899999999999 9999999998853 678888876432 2468999
Q ss_pred EEECCCCCCccH-----HHHHHHHHHcCCcCCCeEEEEEeCCCCC------cc---------ccCCCeEEEEEeecCceE
Q 021116 235 MSVTPPYTAVDY-----EVLMAQISKSALVGKDSFIVVEYPLRTD------ML---------DTCGCLVKIKDRRFGRTH 294 (317)
Q Consensus 235 V~~dPPy~~~~~-----~~~l~~L~~~~lLkpgG~ivv~~~~~~~------l~---------~~~~~~~~~~~r~yG~~~ 294 (317)
|++.=-++ .+ ...++.+. .|+++++++. .+.++- +. ...+...++++..+|..-
T Consensus 172 vLllk~lh--~LE~q~~~~~~~ll~---aL~~~~vvVs-fPtksl~Gr~~gm~~~Y~~~~e~~~~~~~~~~~~~~~~nEl 245 (253)
T 3frh_A 172 ALIFKLLP--LLEREQAGSAMALLQ---SLNTPRMAVS-FPTRSLGGRGKGMEANYAAWFEGGLPAEFEIEDKKTIGTEL 245 (253)
T ss_dssp EEEESCHH--HHHHHSTTHHHHHHH---HCBCSEEEEE-EECC-----------CHHHHHHHHSCTTEEEEEEEEETTEE
T ss_pred HHHHHHHH--HhhhhchhhHHHHHH---HhcCCCEEEE-cChHHhcCCCcchhhHHHHHHHHHhhccchhhhheecCceE
Confidence 98852111 11 11222232 4788866654 442211 11 113456666777777666
Q ss_pred EEEEe
Q 021116 295 LAIYG 299 (317)
Q Consensus 295 l~~~~ 299 (317)
+.+.+
T Consensus 246 ~~~i~ 250 (253)
T 3frh_A 246 IYLIK 250 (253)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 55543
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.55 E-value=3.4e-08 Score=90.96 Aligned_cols=133 Identities=10% Similarity=-0.094 Sum_probs=84.5
Q ss_pred CCCeEEEECCCcchHHHHHHHc-------CC------CEEEEEeCCH---HHH----------HHHHHHhHHHh------
Q 021116 155 RPGRWLDLYSGTGSVGIEAISR-------GC------SEVHFVEMDP---WVV----------SNVLIPNLEWT------ 202 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~-------Ga------~~V~aVDin~---~al----------~~~ar~N~~~~------ 202 (317)
+..+|||+|+|+|...+.++.. +. .+++++|.+| +.+ .+.++++++..
T Consensus 60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g 139 (257)
T 2qy6_A 60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 139 (257)
T ss_dssp SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence 4579999999999988765432 21 3799999987 333 13667776641
Q ss_pred ----CCC---CceEEEEecHHHHHHHHhhhcCCCCCccEEEECC--CCCCc--cHHHHHHHHHHcCCcCCCeEEEEEeCC
Q 021116 203 ----GFL---DVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTP--PYTAV--DYEVLMAQISKSALVGKDSFIVVEYPL 271 (317)
Q Consensus 203 ----gl~---~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dP--Py~~~--~~~~~l~~L~~~~lLkpgG~ivv~~~~ 271 (317)
.++ .+++++.+|+.+.+..... .....||+||+|+ |-... ...+.++.+. ++|+|||+++..+..
T Consensus 140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~--~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~--~~L~pGG~l~tysaa 215 (257)
T 2qy6_A 140 CHRLLLDEGRVTLDLWFGDINELISQLDD--SLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMA--RLARPGGTLATFTSA 215 (257)
T ss_dssp EEEEEEC--CEEEEEEESCHHHHGGGSCG--GGTTCEEEEEECSSCTTTCGGGCCHHHHHHHH--HHEEEEEEEEESCCB
T ss_pred hhheeccCCceEEEEEECcHHHHHhhccc--ccCCeEEEEEECCCCcccChhhcCHHHHHHHH--HHcCCCcEEEEEeCC
Confidence 121 3578999999987654310 0012799999997 32111 2467787776 489999999863322
Q ss_pred CCCcc--ccCCCeEEEEEeecCc
Q 021116 272 RTDML--DTCGCLVKIKDRRFGR 292 (317)
Q Consensus 272 ~~~l~--~~~~~~~~~~~r~yG~ 292 (317)
..+. ...+||.+.+...+|.
T Consensus 216 -~~vrr~L~~aGF~v~~~~g~~~ 237 (257)
T 2qy6_A 216 -GFVRRGLQEAGFTMQKRKGFGR 237 (257)
T ss_dssp -HHHHHHHHHHTEEEEEECCSTT
T ss_pred -HHHHHHHHHCCCEEEeCCCCCC
Confidence 1211 1246788776666663
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=1.4e-06 Score=81.09 Aligned_cols=112 Identities=14% Similarity=0.086 Sum_probs=72.1
Q ss_pred CCeEEEECCCcch--HHHHHHH--cCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCC
Q 021116 156 PGRWLDLYSGTGS--VGIEAIS--RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGP 231 (317)
Q Consensus 156 ~~rVLDlgcGtG~--l~Ieaas--~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~ 231 (317)
..+|||||||+++ ...+.+. ....+|++||.|+.++ +.|++++...+ ..+++++++|+.+....+.. +.....
T Consensus 79 ~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mL-a~Ar~~l~~~~-~~~~~~v~aD~~~~~~~l~~-~~~~~~ 155 (277)
T 3giw_A 79 IRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVL-TLSQGLLASTP-EGRTAYVEADMLDPASILDA-PELRDT 155 (277)
T ss_dssp CCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHH-HTTHHHHCCCS-SSEEEEEECCTTCHHHHHTC-HHHHTT
T ss_pred CCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHH-HHHHHHhccCC-CCcEEEEEecccChhhhhcc-cccccc
Confidence 3689999999733 3334333 2335899999999999 99998886543 24689999999876321100 000133
Q ss_pred cc-----EEEECCCCCC-cc---HHHHHHHHHHcCCcCCCeEEEEEeCCC
Q 021116 232 FD-----YMSVTPPYTA-VD---YEVLMAQISKSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 232 fD-----lV~~dPPy~~-~~---~~~~l~~L~~~~lLkpgG~ivv~~~~~ 272 (317)
|| .|+++--.+. .+ ...++..+. +.|+|||++++.+...
T Consensus 156 ~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~--~~L~PGG~Lvls~~~~ 203 (277)
T 3giw_A 156 LDLTRPVALTVIAIVHFVLDEDDAVGIVRRLL--EPLPSGSYLAMSIGTA 203 (277)
T ss_dssp CCTTSCCEEEEESCGGGSCGGGCHHHHHHHHH--TTSCTTCEEEEEEECC
T ss_pred cCcCCcchHHhhhhHhcCCchhhHHHHHHHHH--HhCCCCcEEEEEeccC
Confidence 54 4666654332 12 245676665 5899999999986543
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.44 E-value=5.2e-07 Score=84.74 Aligned_cols=108 Identities=14% Similarity=0.108 Sum_probs=82.4
Q ss_pred CCCCeEEEECCCcchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHhHHHh--C-C-CCceEEEEecHHHHHHHHhhhcCC
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWT--G-F-LDVSSIHTVRVETFLERAEQFVGK 228 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~-Ga~~V~aVDin~~al~~~ar~N~~~~--g-l-~~~v~ii~gD~~~~l~~~~~~~~~ 228 (317)
...++||=+|-|.|.+.-++++. +..+|+.||+|+..+ +.+++-+... + + +.+++++.+|+..++.. .
T Consensus 82 p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv-~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~------~ 154 (294)
T 3o4f_A 82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVV-SFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQ------T 154 (294)
T ss_dssp SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHH-HHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSC------S
T ss_pred CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHH-HHHHhcCccccccccCCCcEEEEechHHHHHhh------c
Confidence 35789999999999999998874 567899999999999 9999876432 1 1 35799999999998753 3
Q ss_pred CCCccEEEECCCCCCc----cH-HHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 229 DGPFDYMSVTPPYTAV----DY-EVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 229 ~~~fDlV~~dPPy~~~----~~-~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
.++||+||+|.+-..+ .+ .+.++.+. +.|+|||++++...
T Consensus 155 ~~~yDvIi~D~~dp~~~~~~L~t~eFy~~~~--~~L~p~Gv~v~q~~ 199 (294)
T 3o4f_A 155 SQTFDVIISDCTDPIGPGESLFTSAFYEGCK--RCLNPGGIFVAQNG 199 (294)
T ss_dssp SCCEEEEEESCCCCCCTTCCSSCCHHHHHHH--HTEEEEEEEEEEEE
T ss_pred cccCCEEEEeCCCcCCCchhhcCHHHHHHHH--HHhCCCCEEEEecC
Confidence 5789999998642211 11 34555554 48999999998654
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=4.3e-07 Score=85.09 Aligned_cols=92 Identities=11% Similarity=0.007 Sum_probs=62.4
Q ss_pred CCCCeEEEECCCc------chHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEE-EEecHHHHHHHHhhh
Q 021116 154 LRPGRWLDLYSGT------GSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSI-HTVRVETFLERAEQF 225 (317)
Q Consensus 154 ~~~~rVLDlgcGt------G~l~Ieaas~G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~i-i~gD~~~~l~~~~~~ 225 (317)
.++.+|||+|||+ |+ .+.+...+ ..+|+++|+++. + +++++ +++|+.+..
T Consensus 62 ~~g~~VLDLGcGsg~~~GpGs-~~~a~~~~~~~~V~gvDis~~-v--------------~~v~~~i~gD~~~~~------ 119 (290)
T 2xyq_A 62 PYNMRVIHFGAGSDKGVAPGT-AVLRQWLPTGTLLVDSDLNDF-V--------------SDADSTLIGDCATVH------ 119 (290)
T ss_dssp CTTCEEEEESCCCTTSBCHHH-HHHHHHSCTTCEEEEEESSCC-B--------------CSSSEEEESCGGGCC------
T ss_pred CCCCEEEEeCCCCCCCCCcHH-HHHHHHcCCCCEEEEEECCCC-C--------------CCCEEEEECccccCC------
Confidence 3578999999944 76 33333344 358999999986 1 13678 999987641
Q ss_pred cCCCCCccEEEECCCCCC------------ccHHHHHHHHHHcCCcCCCeEEEEEeCC
Q 021116 226 VGKDGPFDYMSVTPPYTA------------VDYEVLMAQISKSALVGKDSFIVVEYPL 271 (317)
Q Consensus 226 ~~~~~~fDlV~~dPPy~~------------~~~~~~l~~L~~~~lLkpgG~ivv~~~~ 271 (317)
..++||+|++|++... ..++..++.+. ++|+|||++++....
T Consensus 120 --~~~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~--r~LkpGG~~v~~~~~ 173 (290)
T 2xyq_A 120 --TANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIK--QKLALGGSIAVKITE 173 (290)
T ss_dssp --CSSCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHH--HHEEEEEEEEEEECS
T ss_pred --ccCcccEEEEcCCccccccccccccchHHHHHHHHHHHH--HhcCCCcEEEEEEec
Confidence 1257999999964321 11345555554 589999999996643
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=2.5e-07 Score=87.51 Aligned_cols=95 Identities=13% Similarity=0.000 Sum_probs=68.9
Q ss_pred CCCeEEEECCCcchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
...+|||+|||+|.++..++++. ..+++++|+ +.++ +.++++ .+++++.+|+.+.+ +.||
T Consensus 188 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~-~~a~~~-------~~v~~~~~d~~~~~----------p~~D 248 (352)
T 1fp2_A 188 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVV-ENLSGS-------NNLTYVGGDMFTSI----------PNAD 248 (352)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHH-TTCCCB-------TTEEEEECCTTTCC----------CCCS
T ss_pred cCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHH-hhcccC-------CCcEEEeccccCCC----------CCcc
Confidence 46899999999999999887653 347999999 9998 777642 23899999986421 3499
Q ss_pred EEEECCCCC-CccHH--HHHHHHHHcCCcCC---CeEEEEEeC
Q 021116 234 YMSVTPPYT-AVDYE--VLMAQISKSALVGK---DSFIVVEYP 270 (317)
Q Consensus 234 lV~~dPPy~-~~~~~--~~l~~L~~~~lLkp---gG~ivv~~~ 270 (317)
+|++.-..+ ..+.+ .+++.+. +.|+| ||++++...
T Consensus 249 ~v~~~~~lh~~~d~~~~~~l~~~~--~~L~p~~~gG~l~i~e~ 289 (352)
T 1fp2_A 249 AVLLKYILHNWTDKDCLRILKKCK--EAVTNDGKRGKVTIIDM 289 (352)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHH--HHHSGGGCCCEEEEEEC
T ss_pred EEEeehhhccCCHHHHHHHHHHHH--HhCCCCCCCcEEEEEEe
Confidence 999864433 22222 5555554 47999 999887653
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=2.2e-07 Score=88.68 Aligned_cols=94 Identities=12% Similarity=0.016 Sum_probs=68.5
Q ss_pred CCCeEEEECCCcchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
++.+|||+|||+|.++..++.++ ..+++++|+ +.++ +.++++ .+++++.+|+.+.+ +.||
T Consensus 209 ~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~-~~a~~~-------~~v~~~~~d~~~~~----------~~~D 269 (372)
T 1fp1_D 209 GISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVI-ENAPPL-------SGIEHVGGDMFASV----------PQGD 269 (372)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHH-TTCCCC-------TTEEEEECCTTTCC----------CCEE
T ss_pred CCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHH-Hhhhhc-------CCCEEEeCCcccCC----------CCCC
Confidence 46899999999999999888765 347899999 8887 776542 34899999986521 2399
Q ss_pred EEEECCCCCC-ccHH--HHHHHHHHcCCcCCCeEEEEEe
Q 021116 234 YMSVTPPYTA-VDYE--VLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 234 lV~~dPPy~~-~~~~--~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
+|++.-..+. .+.+ .+++.+. +.|+|||++++..
T Consensus 270 ~v~~~~~lh~~~d~~~~~~l~~~~--~~L~pgG~l~i~e 306 (372)
T 1fp1_D 270 AMILKAVCHNWSDEKCIEFLSNCH--KALSPNGKVIIVE 306 (372)
T ss_dssp EEEEESSGGGSCHHHHHHHHHHHH--HHEEEEEEEEEEE
T ss_pred EEEEecccccCCHHHHHHHHHHHH--HhcCCCCEEEEEE
Confidence 9998644322 2222 5555554 5899999998764
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=98.37 E-value=1.9e-06 Score=73.15 Aligned_cols=130 Identities=14% Similarity=0.072 Sum_probs=81.5
Q ss_pred CChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcc-hHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCce
Q 021116 131 PMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG-SVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVS 208 (317)
Q Consensus 131 pt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG-~l~Ieaas-~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v 208 (317)
|....+.+.+...+.... ..+.+|||+|||+| .++..++. .|. .|+++|+|+.++ +
T Consensus 16 ~~~~~m~e~LaeYI~~~~-----~~~~rVlEVG~G~g~~vA~~La~~~g~-~V~atDInp~Av-~--------------- 73 (153)
T 2k4m_A 16 PRGSHMWNDLAVYIIRCS-----GPGTRVVEVGAGRFLYVSDYIRKHSKV-DLVLTDIKPSHG-G--------------- 73 (153)
T ss_dssp CCCCHHHHHHHHHHHHHS-----CSSSEEEEETCTTCCHHHHHHHHHSCC-EEEEECSSCSST-T---------------
T ss_pred cchhhHHHHHHHHHHhcC-----CCCCcEEEEccCCChHHHHHHHHhCCC-eEEEEECCcccc-c---------------
Confidence 333334666777765431 34679999999999 59988876 786 599999999998 5
Q ss_pred EEEEecHHHHHHHHhhhcCCCCCccEE-EECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCCCCCccccCCCeEEEEE
Q 021116 209 SIHTVRVETFLERAEQFVGKDGPFDYM-SVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287 (317)
Q Consensus 209 ~ii~gD~~~~l~~~~~~~~~~~~fDlV-~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~~~l~~~~~~~~~~~~ 287 (317)
+++.|+++..... -+.||+| -++||.. ....+++ ++. +-|.-+++..-..+... ..+.+ +-
T Consensus 74 -~v~dDiF~P~~~~------Y~~~DLIYsirPP~E--l~~~i~~-lA~----~v~adliI~pL~~E~~~-~~~~~---kl 135 (153)
T 2k4m_A 74 -IVRDDITSPRMEI------YRGAALIYSIRPPAE--IHSSLMR-VAD----AVGARLIIKPLTGEDIV-TERKM---KL 135 (153)
T ss_dssp -EECCCSSSCCHHH------HTTEEEEEEESCCTT--THHHHHH-HHH----HHTCEEEEECBTTBCCC-CCTTC---EE
T ss_pred -eEEccCCCCcccc------cCCcCEEEEcCCCHH--HHHHHHH-HHH----HcCCCEEEEcCCCCcCC-CCCce---EE
Confidence 5667776543222 1479999 6899964 2333333 332 33566666554444432 11224 34
Q ss_pred eecCceEEEEEee
Q 021116 288 RRFGRTHLAIYGP 300 (317)
Q Consensus 288 r~yG~~~l~~~~p 300 (317)
..|....+.+|+.
T Consensus 136 ~ny~g~~fY~~~~ 148 (153)
T 2k4m_A 136 VNYGRTYFYEYIA 148 (153)
T ss_dssp EEETTEEEEEEEC
T ss_pred EecCCceEEEEeh
Confidence 5677666666653
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=98.36 E-value=1.8e-06 Score=80.64 Aligned_cols=106 Identities=10% Similarity=0.016 Sum_probs=77.7
Q ss_pred CCCeEEEECCCcchHHHHHHHc----C--CCEEEEEeCCH--------------------------HHHHHHHHHhHHHh
Q 021116 155 RPGRWLDLYSGTGSVGIEAISR----G--CSEVHFVEMDP--------------------------WVVSNVLIPNLEWT 202 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~----G--a~~V~aVDin~--------------------------~al~~~ar~N~~~~ 202 (317)
..++||++|+..|..++.++.. | ..+|+++|... ..+ +.+++|++..
T Consensus 106 ~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~-~~ar~n~~~~ 184 (282)
T 2wk1_A 106 VPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSE-EEVRRNFRNY 184 (282)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCH-HHHHHHHHHT
T ss_pred CCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHH-HHHHHHHHHc
Confidence 4679999999999988764321 1 35799999631 135 7799999999
Q ss_pred CCC-CceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCc-cHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 203 GFL-DVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAV-DYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 203 gl~-~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~-~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
|+. ++++++.||+.+.+... ..++||+|++|. .+. .+...++.+. ++|++||+|++..-
T Consensus 185 gl~~~~I~li~Gda~etL~~~-----~~~~~d~vfIDa--D~y~~~~~~Le~~~--p~L~pGGiIv~DD~ 245 (282)
T 2wk1_A 185 DLLDEQVRFLPGWFKDTLPTA-----PIDTLAVLRMDG--DLYESTWDTLTNLY--PKVSVGGYVIVDDY 245 (282)
T ss_dssp TCCSTTEEEEESCHHHHSTTC-----CCCCEEEEEECC--CSHHHHHHHHHHHG--GGEEEEEEEEESSC
T ss_pred CCCcCceEEEEeCHHHHHhhC-----CCCCEEEEEEcC--CccccHHHHHHHHH--hhcCCCEEEEEcCC
Confidence 994 88999999998876432 246899999995 321 2334555554 58999999998653
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=1e-06 Score=83.88 Aligned_cols=102 Identities=15% Similarity=0.045 Sum_probs=72.0
Q ss_pred CCCeEEEECCCcchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
...+|+|+|||+|.++++++++. ..+++..|. |.++ +.|+++++..+ .++++++.+|+++. ..+.+|
T Consensus 179 ~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~-~~a~~~~~~~~-~~rv~~~~gD~~~~---------~~~~~D 246 (353)
T 4a6d_A 179 VFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVV-WTAKQHFSFQE-EEQIDFQEGDFFKD---------PLPEAD 246 (353)
T ss_dssp GCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHH-HHHHHHSCC---CCSEEEEESCTTTS---------CCCCCS
T ss_pred cCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHH-HHHHHhhhhcc-cCceeeecCccccC---------CCCCce
Confidence 35799999999999999988764 346888887 7888 99999887555 57899999997642 125689
Q ss_pred EEEECCCCC-Ccc--HHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 234 YMSVTPPYT-AVD--YEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 234 lV~~dPPy~-~~~--~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
+|++---.+ +.+ ...+++.+. +.|+|||.+++...
T Consensus 247 ~~~~~~vlh~~~d~~~~~iL~~~~--~al~pgg~lli~e~ 284 (353)
T 4a6d_A 247 LYILARVLHDWADGKCSHLLERIY--HTCKPGGGILVIES 284 (353)
T ss_dssp EEEEESSGGGSCHHHHHHHHHHHH--HHCCTTCEEEEEEC
T ss_pred EEEeeeecccCCHHHHHHHHHHHH--hhCCCCCEEEEEEe
Confidence 999842211 111 234455554 47999998887654
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=5.4e-07 Score=86.18 Aligned_cols=95 Identities=12% Similarity=-0.009 Sum_probs=67.7
Q ss_pred CCCeEEEECCCcchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
...+|||+|||+|.+++.++++. ..+++++|+ +.++ +.++++ ++++++.+|+.+.+ ... |
T Consensus 203 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~-~~a~~~-------~~v~~~~~d~~~~~---------p~~-D 263 (368)
T 3reo_A 203 GLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVI-QDAPAF-------SGVEHLGGDMFDGV---------PKG-D 263 (368)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHH-TTCCCC-------TTEEEEECCTTTCC---------CCC-S
T ss_pred CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHH-Hhhhhc-------CCCEEEecCCCCCC---------CCC-C
Confidence 46899999999999999887753 347999999 8887 766542 45999999987521 122 9
Q ss_pred EEEECCCCCCcc---HHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 234 YMSVTPPYTAVD---YEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 234 lV~~dPPy~~~~---~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
+|++.-..+... ...+++.+. +.|+|||++++...
T Consensus 264 ~v~~~~vlh~~~~~~~~~~l~~~~--~~L~pgG~l~i~e~ 301 (368)
T 3reo_A 264 AIFIKWICHDWSDEHCLKLLKNCY--AALPDHGKVIVAEY 301 (368)
T ss_dssp EEEEESCGGGBCHHHHHHHHHHHH--HHSCTTCEEEEEEC
T ss_pred EEEEechhhcCCHHHHHHHHHHHH--HHcCCCCEEEEEEe
Confidence 999864433212 234455554 47999999887654
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=98.34 E-value=2.1e-06 Score=80.12 Aligned_cols=80 Identities=14% Similarity=0.069 Sum_probs=64.2
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
.++..++|.+||.|..+.++++++ .+|+++|.|+.++ +.|++ ++. +++++++++..++...+... ..+++|
T Consensus 21 ~~gg~~VD~T~G~GGHS~~il~~~-g~VigiD~Dp~Ai-~~A~~-L~~----~rv~lv~~~f~~l~~~L~~~--g~~~vD 91 (285)
T 1wg8_A 21 RPGGVYVDATLGGAGHARGILERG-GRVIGLDQDPEAV-ARAKG-LHL----PGLTVVQGNFRHLKRHLAAL--GVERVD 91 (285)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHTT-CEEEEEESCHHHH-HHHHH-TCC----TTEEEEESCGGGHHHHHHHT--TCSCEE
T ss_pred CCCCEEEEeCCCCcHHHHHHHHCC-CEEEEEeCCHHHH-HHHHh-hcc----CCEEEEECCcchHHHHHHHc--CCCCcC
Confidence 357899999999999999988884 4899999999999 99887 643 47999999988774433211 125799
Q ss_pred EEEECCCCC
Q 021116 234 YMSVTPPYT 242 (317)
Q Consensus 234 lV~~dPPy~ 242 (317)
.|++|+.+.
T Consensus 92 gIL~DLGvS 100 (285)
T 1wg8_A 92 GILADLGVS 100 (285)
T ss_dssp EEEEECSCC
T ss_pred EEEeCCccc
Confidence 999999875
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=98.31 E-value=2.2e-06 Score=79.68 Aligned_cols=61 Identities=18% Similarity=0.131 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCC
Q 021116 134 EVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGF 204 (317)
Q Consensus 134 ~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl 204 (317)
..+.+.+..... .++..|||+|||||+++++++..|. +++++|+++.++ +.|++|++...-
T Consensus 222 ~~l~~~~i~~~~--------~~~~~vlD~f~GsGt~~~~a~~~g~-~~~g~e~~~~~~-~~a~~r~~~~~~ 282 (297)
T 2zig_A 222 LELAERLVRMFS--------FVGDVVLDPFAGTGTTLIAAARWGR-RALGVELVPRYA-QLAKERFAREVP 282 (297)
T ss_dssp HHHHHHHHHHHC--------CTTCEEEETTCTTTHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHHHHHST
T ss_pred HHHHHHHHHHhC--------CCCCEEEECCCCCCHHHHHHHHcCC-eEEEEeCCHHHH-HHHHHHHHHhcc
Confidence 445555544442 3688999999999999999998885 799999999999 999999987643
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=2.5e-06 Score=82.70 Aligned_cols=110 Identities=17% Similarity=0.177 Sum_probs=80.5
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHh-C--C----CCceEEEEecHHHHHHHHhhhcC
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWT-G--F----LDVSSIHTVRVETFLERAEQFVG 227 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~-g--l----~~~v~ii~gD~~~~l~~~~~~~~ 227 (317)
+.++||=+|-|.|...-++++....+|+.||+|+..+ +.+++-+... + + .++++++.+|+.++++....
T Consensus 205 ~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VV-e~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~--- 280 (381)
T 3c6k_A 205 TGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVI-DGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAK--- 280 (381)
T ss_dssp TTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHH-HHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHH---
T ss_pred CCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHH-HHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhh---
Confidence 4689999999999999999886678999999999999 9999864321 1 1 14589999999999875421
Q ss_pred CCCCccEEEECCC---CCCc-------c-HHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 228 KDGPFDYMSVTPP---YTAV-------D-YEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 228 ~~~~fDlV~~dPP---y~~~-------~-~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
...+||+||+|.+ .... . ..+.++.+. +.|+|||++++...
T Consensus 281 ~~~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~--~~L~p~GVlv~Q~~ 332 (381)
T 3c6k_A 281 EGREFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSM--KVLKQDGKYFTQGN 332 (381)
T ss_dssp HTCCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHH--HTEEEEEEEEEEEE
T ss_pred ccCceeEEEECCCCCcccCcccCcchHHHHHHHHHHHH--HhcCCCCEEEEecC
Confidence 1467999999843 1111 1 134444444 48999999998644
|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... | Back alignment and structure |
|---|
Probab=98.30 E-value=6.6e-07 Score=84.97 Aligned_cols=73 Identities=21% Similarity=0.215 Sum_probs=59.2
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccE
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDl 234 (317)
.+.+++|||||+|.+++.+.+.|+..|.++|+|+.++ +..+.|.... . ++|+.++.... -..+|+
T Consensus 10 ~~~~~~dLFaG~Gg~~~g~~~aG~~~v~~~e~d~~a~-~t~~~N~~~~-----~---~~Di~~~~~~~------~~~~D~ 74 (327)
T 2c7p_A 10 TGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQ-EVYEMNFGEK-----P---EGDITQVNEKT------IPDHDI 74 (327)
T ss_dssp TTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHH-HHHHHHHSCC-----C---BSCGGGSCGGG------SCCCSE
T ss_pred CCCcEEEECCCcCHHHHHHHHCCCeEEEEEeCCHHHH-HHHHHHcCCC-----C---cCCHHHcCHhh------CCCCCE
Confidence 4578999999999999999899998899999999998 9999996421 1 57887654221 146999
Q ss_pred EEECCCCC
Q 021116 235 MSVTPPYT 242 (317)
Q Consensus 235 V~~dPPy~ 242 (317)
|+.+||+.
T Consensus 75 l~~gpPCQ 82 (327)
T 2c7p_A 75 LCAGFPCQ 82 (327)
T ss_dssp EEEECCCT
T ss_pred EEECCCCC
Confidence 99999985
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=98.30 E-value=4.7e-07 Score=86.35 Aligned_cols=73 Identities=21% Similarity=0.285 Sum_probs=57.7
Q ss_pred CeEEEECCCcchHHHHHHHcC--CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHH-HhhhcCCCCCcc
Q 021116 157 GRWLDLYSGTGSVGIEAISRG--CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER-AEQFVGKDGPFD 233 (317)
Q Consensus 157 ~rVLDlgcGtG~l~Ieaas~G--a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~-~~~~~~~~~~fD 233 (317)
.+|+|||||+|.+++.+.+.| +..|.++|+|+.++ +..+.|... ..++++|+.++... +. ...+|
T Consensus 3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~-~~~~~N~~~------~~~~~~Di~~~~~~~~~-----~~~~D 70 (343)
T 1g55_A 3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVAN-EVYKYNFPH------TQLLAKTIEGITLEEFD-----RLSFD 70 (343)
T ss_dssp EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHH-HHHHHHCTT------SCEECSCGGGCCHHHHH-----HHCCS
T ss_pred CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHH-HHHHHhccc------cccccCCHHHccHhHcC-----cCCcC
Confidence 479999999999999988888 55799999999998 999999642 33678888876422 11 12699
Q ss_pred EEEECCCC
Q 021116 234 YMSVTPPY 241 (317)
Q Consensus 234 lV~~dPPy 241 (317)
+|+.+||+
T Consensus 71 ~l~~gpPC 78 (343)
T 1g55_A 71 MILMSPPC 78 (343)
T ss_dssp EEEECCC-
T ss_pred EEEEcCCC
Confidence 99999995
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=98.25 E-value=1.9e-06 Score=83.27 Aligned_cols=79 Identities=25% Similarity=0.302 Sum_probs=60.4
Q ss_pred CeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHH-HhhhcCCCCCccEE
Q 021116 157 GRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER-AEQFVGKDGPFDYM 235 (317)
Q Consensus 157 ~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~-~~~~~~~~~~fDlV 235 (317)
-+++|||||+|.+++.+.+.|...|.++|+|+.++ +..+.|.. ...++++|+.++... ..........+|+|
T Consensus 3 ~~vidLFsG~GGlslG~~~aG~~~v~avE~d~~a~-~t~~~N~~------~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i 75 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARAGFDVKMAVEIDQHAI-NTHAINFP------RSLHVQEDVSLLNAEIIKGFFKNDMPIDGI 75 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHHTCEEEEEECSCHHHH-HHHHHHCT------TSEEECCCGGGCCHHHHHHHHCSCCCCCEE
T ss_pred CeEEEEccCcCHHHHHHHHCCCcEEEEEeCCHHHH-HHHHHhCC------CCceEecChhhcCHHHHHhhcccCCCeeEE
Confidence 47999999999999998888988889999999998 99988853 256788898765321 10000123679999
Q ss_pred EECCCCC
Q 021116 236 SVTPPYT 242 (317)
Q Consensus 236 ~~dPPy~ 242 (317)
+.+||..
T Consensus 76 ~ggpPCQ 82 (376)
T 3g7u_A 76 IGGPPCQ 82 (376)
T ss_dssp EECCCCC
T ss_pred EecCCCC
Confidence 9999964
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=98.23 E-value=2.4e-06 Score=77.96 Aligned_cols=61 Identities=18% Similarity=0.059 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCC
Q 021116 134 EVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGF 204 (317)
Q Consensus 134 ~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl 204 (317)
..+.+.+..... .++..|||+|||||+.+++|...|. +++++|+++.++ +.+++|++.+++
T Consensus 199 ~~l~~~~i~~~~--------~~~~~vlD~f~GsGtt~~~a~~~gr-~~ig~e~~~~~~-~~~~~r~~~~~~ 259 (260)
T 1g60_A 199 RDLIERIIRASS--------NPNDLVLDCFMGSGTTAIVAKKLGR-NFIGCDMNAEYV-NQANFVLNQLEI 259 (260)
T ss_dssp HHHHHHHHHHHC--------CTTCEEEESSCTTCHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHHHC---
T ss_pred HHHHHHHHHHhC--------CCCCEEEECCCCCCHHHHHHHHcCC-eEEEEeCCHHHH-HHHHHHHHhccC
Confidence 455555555442 3688999999999999999998875 799999999998 999999987764
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=1.2e-06 Score=83.73 Aligned_cols=95 Identities=9% Similarity=-0.032 Sum_probs=67.2
Q ss_pred CCCeEEEECCCcchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
...+|||+|||+|.++..++++. ..+++++|+ +.++ +.++++ ++++++.+|+++.+ . .. |
T Consensus 201 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~-~~a~~~-------~~v~~~~~D~~~~~--------p-~~-D 261 (364)
T 3p9c_A 201 GLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVI-SEAPQF-------PGVTHVGGDMFKEV--------P-SG-D 261 (364)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHH-TTCCCC-------TTEEEEECCTTTCC--------C-CC-S
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHH-Hhhhhc-------CCeEEEeCCcCCCC--------C-CC-C
Confidence 46899999999999999887753 347999999 8887 666532 46999999987521 1 22 9
Q ss_pred EEEECCCCC-Cc--cHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 234 YMSVTPPYT-AV--DYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 234 lV~~dPPy~-~~--~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
+|++.--.+ .. ....+++.+. +.|+|||++++...
T Consensus 262 ~v~~~~vlh~~~d~~~~~~L~~~~--~~L~pgG~l~i~e~ 299 (364)
T 3p9c_A 262 TILMKWILHDWSDQHCATLLKNCY--DALPAHGKVVLVQC 299 (364)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHH--HHSCTTCEEEEEEC
T ss_pred EEEehHHhccCCHHHHHHHHHHHH--HHcCCCCEEEEEEe
Confidence 999854322 11 1234455554 47999999987654
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=1.2e-06 Score=82.98 Aligned_cols=94 Identities=13% Similarity=-0.025 Sum_probs=67.9
Q ss_pred CCCeEEEECCCcchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
...+|||+|||+|.++..++++. ..+++++|+ +.++ +.+++ .. +++++.+|+.+. -+.||
T Consensus 193 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~-~~a~~------~~-~v~~~~~d~~~~----------~~~~D 253 (358)
T 1zg3_A 193 GLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVV-GNLTG------NE-NLNFVGGDMFKS----------IPSAD 253 (358)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHH-SSCCC------CS-SEEEEECCTTTC----------CCCCS
T ss_pred CCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHH-hhccc------CC-CcEEEeCccCCC----------CCCce
Confidence 45799999999999999888764 347999999 7887 66653 22 389999998651 13599
Q ss_pred EEEECCCCC-CccHH--HHHHHHHHcCCcCC---CeEEEEEe
Q 021116 234 YMSVTPPYT-AVDYE--VLMAQISKSALVGK---DSFIVVEY 269 (317)
Q Consensus 234 lV~~dPPy~-~~~~~--~~l~~L~~~~lLkp---gG~ivv~~ 269 (317)
+|++.-..+ ..+.+ .+++.+. +.|+| ||++++..
T Consensus 254 ~v~~~~vlh~~~d~~~~~~l~~~~--~~L~p~~~gG~l~i~e 293 (358)
T 1zg3_A 254 AVLLKWVLHDWNDEQSLKILKNSK--EAISHKGKDGKVIIID 293 (358)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHH--HHTGGGGGGCEEEEEE
T ss_pred EEEEcccccCCCHHHHHHHHHHHH--HhCCCCCCCcEEEEEE
Confidence 999875443 22322 5555554 47999 99888754
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=98.17 E-value=1.3e-06 Score=73.90 Aligned_cols=90 Identities=12% Similarity=0.109 Sum_probs=65.6
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
.++.+|||++||+ | .+|+++.++ +.|+++... +++++++|+.+.... ...+++||
T Consensus 11 ~~g~~vL~~~~g~--------------v-~vD~s~~ml-~~a~~~~~~-----~~~~~~~d~~~~~~~----~~~~~~fD 65 (176)
T 2ld4_A 11 SAGQFVAVVWDKS--------------S-PVEALKGLV-DKLQALTGN-----EGRVSVENIKQLLQS----AHKESSFD 65 (176)
T ss_dssp CTTSEEEEEECTT--------------S-CHHHHHHHH-HHHHHHTTT-----TSEEEEEEGGGGGGG----CCCSSCEE
T ss_pred CCCCEEEEecCCc--------------e-eeeCCHHHH-HHHHHhccc-----CcEEEEechhcCccc----cCCCCCEe
Confidence 3689999999986 2 389999999 999887532 378999998865310 01357899
Q ss_pred EEEECCCCCC--ccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 234 YMSVTPPYTA--VDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 234 lV~~dPPy~~--~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
+|++.-..+. .+....++.+. ++|+|||++++.++
T Consensus 66 ~V~~~~~l~~~~~~~~~~l~~~~--r~LkpgG~l~~~~~ 102 (176)
T 2ld4_A 66 IILSGLVPGSTTLHSAEILAEIA--RILRPGGCLFLKEP 102 (176)
T ss_dssp EEEECCSTTCCCCCCHHHHHHHH--HHEEEEEEEEEEEE
T ss_pred EEEECChhhhcccCHHHHHHHHH--HHCCCCEEEEEEcc
Confidence 9998543322 35567777775 58999999999755
|
| >2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.83 E-value=4.2e-05 Score=71.61 Aligned_cols=78 Identities=18% Similarity=0.180 Sum_probs=59.8
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCE--EEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCc
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGCSE--VHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF 232 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga~~--V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~f 232 (317)
..-+++|||||.|.+++.+.+.|... |.++|+|+.++ +..+.|.. + ..++.+|+.++.... ++ ..+.+
T Consensus 15 ~~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~-~ty~~N~~-----~-~~~~~~DI~~i~~~~--i~-~~~~~ 84 (295)
T 2qrv_A 15 KPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSI-TVGMVRHQ-----G-KIMYVGDVRSVTQKH--IQ-EWGPF 84 (295)
T ss_dssp CCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHH-HHHHHHTT-----T-CEEEECCGGGCCHHH--HH-HTCCC
T ss_pred CCCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHH-HHHHHhCC-----C-CceeCCChHHccHHH--hc-ccCCc
Confidence 46689999999999999888888875 79999999998 88887742 2 357889988764321 00 01469
Q ss_pred cEEEECCCCC
Q 021116 233 DYMSVTPPYT 242 (317)
Q Consensus 233 DlV~~dPPy~ 242 (317)
|+++.+||+.
T Consensus 85 Dll~ggpPCQ 94 (295)
T 2qrv_A 85 DLVIGGSPCN 94 (295)
T ss_dssp SEEEECCCCG
T ss_pred CEEEecCCCc
Confidence 9999999974
|
| >3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A* | Back alignment and structure |
|---|
Probab=97.70 E-value=2.5e-05 Score=72.96 Aligned_cols=71 Identities=15% Similarity=0.173 Sum_probs=56.9
Q ss_pred eEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEE
Q 021116 158 RWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSV 237 (317)
Q Consensus 158 rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~ 237 (317)
+|+|||||.|.+.+-+-..|..-|.++|+|+.++ +.-+.|.. .+++.+|+.++.... -+..|+++.
T Consensus 2 kvidLFsG~GG~~~G~~~aG~~~v~a~e~d~~a~-~ty~~N~~-------~~~~~~DI~~i~~~~------~~~~D~l~g 67 (331)
T 3ubt_Y 2 NLISLFSGAGGLDLGFQKAGFRIICANEYDKSIW-KTYESNHS-------AKLIKGDISKISSDE------FPKCDGIIG 67 (331)
T ss_dssp EEEEESCTTCHHHHHHHHTTCEEEEEEECCTTTH-HHHHHHCC-------SEEEESCGGGCCGGG------SCCCSEEEC
T ss_pred eEEEeCcCccHHHHHHHHCCCEEEEEEeCCHHHH-HHHHHHCC-------CCcccCChhhCCHhh------CCcccEEEe
Confidence 6999999999999877777887889999999998 88887741 257889988753221 257899999
Q ss_pred CCCCC
Q 021116 238 TPPYT 242 (317)
Q Consensus 238 dPPy~ 242 (317)
.||..
T Consensus 68 gpPCQ 72 (331)
T 3ubt_Y 68 GPPSQ 72 (331)
T ss_dssp CCCGG
T ss_pred cCCCC
Confidence 99964
|
| >3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A | Back alignment and structure |
|---|
Probab=97.65 E-value=7.8e-05 Score=74.36 Aligned_cols=83 Identities=18% Similarity=0.149 Sum_probs=59.4
Q ss_pred CCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHH----------Hhhh
Q 021116 156 PGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER----------AEQF 225 (317)
Q Consensus 156 ~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~----------~~~~ 225 (317)
.-+++|||||.|.+++-+-..|...|.++|+|+.++ +.-+.|.... ....++++|+.++... ...+
T Consensus 88 ~~~viDLFaG~GGlslG~~~aG~~~v~avE~d~~A~-~ty~~N~~~~---p~~~~~~~DI~~i~~~~~~~~~~~~~~~~i 163 (482)
T 3me5_A 88 AFRFIDLFAGIGGIRRGFESIGGQCVFTSEWNKHAV-RTYKANHYCD---PATHHFNEDIRDITLSHQEGVSDEAAAEHI 163 (482)
T ss_dssp SEEEEEESCTTSHHHHHHHTTTEEEEEEECCCHHHH-HHHHHHSCCC---TTTCEEESCTHHHHCTTCTTSCHHHHHHHH
T ss_pred cceEEEecCCccHHHHHHHHCCCEEEEEEeCCHHHH-HHHHHhcccC---CCcceeccchhhhhhccccccchhhHHhhh
Confidence 458999999999999877777877799999999998 8888875211 1235678998876410 0000
Q ss_pred cCCCCCccEEEECCCCC
Q 021116 226 VGKDGPFDYMSVTPPYT 242 (317)
Q Consensus 226 ~~~~~~fDlV~~dPPy~ 242 (317)
....+.+|+++..||..
T Consensus 164 ~~~~~~~Dvl~gGpPCQ 180 (482)
T 3me5_A 164 RQHIPEHDVLLAGFPCQ 180 (482)
T ss_dssp HHHSCCCSEEEEECCCC
T ss_pred hhcCCCCCEEEecCCCc
Confidence 00125689999999964
|
| >4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda} | Back alignment and structure |
|---|
Probab=97.62 E-value=5.6e-05 Score=71.89 Aligned_cols=75 Identities=20% Similarity=0.285 Sum_probs=56.7
Q ss_pred CeEEEECCCcchHHHHHHHcCC--CEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccE
Q 021116 157 GRWLDLYSGTGSVGIEAISRGC--SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (317)
Q Consensus 157 ~rVLDlgcGtG~l~Ieaas~Ga--~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDl 234 (317)
-+++|||||.|.+++.+...|. ..|.++|+|+.++ +..+.|... ..++.+|+.++..... ....+|+
T Consensus 4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~-~ty~~N~~~------~~~~~~DI~~~~~~~~----~~~~~D~ 72 (333)
T 4h0n_A 4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVAN-SVYKHNFPE------TNLLNRNIQQLTPQVI----KKWNVDT 72 (333)
T ss_dssp EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHH-HHHHHHCTT------SCEECCCGGGCCHHHH----HHTTCCE
T ss_pred CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHH-HHHHHhCCC------CceeccccccCCHHHh----ccCCCCE
Confidence 3799999999999988777786 5689999999998 888888632 2356788876532211 0136999
Q ss_pred EEECCCCC
Q 021116 235 MSVTPPYT 242 (317)
Q Consensus 235 V~~dPPy~ 242 (317)
++..||..
T Consensus 73 l~ggpPCQ 80 (333)
T 4h0n_A 73 ILMSPPCQ 80 (333)
T ss_dssp EEECCCCC
T ss_pred EEecCCCc
Confidence 99999974
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=97.62 E-value=3.7e-05 Score=72.49 Aligned_cols=62 Identities=16% Similarity=0.078 Sum_probs=51.1
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHH
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL 219 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l 219 (317)
.+++.|||+|||+|+.+++|...|. +.+++|+++..+ +.++++++..+.. ...++.|+.++.
T Consensus 251 ~~~~~VlDpF~GsGtt~~aa~~~gr-~~ig~e~~~~~~-~~~~~r~~~~~~~--~~~~~~~~~~i~ 312 (323)
T 1boo_A 251 EPDDLVVDIFGGSNTTGLVAERESR-KWISFEMKPEYV-AASAFRFLDNNIS--EEKITDIYNRIL 312 (323)
T ss_dssp CTTCEEEETTCTTCHHHHHHHHTTC-EEEEEESCHHHH-HHHHGGGSCSCSC--HHHHHHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHcCC-CEEEEeCCHHHH-HHHHHHHHhcccc--hHHHHHHHHHHH
Confidence 4688999999999999999988875 799999999998 9999999877653 445566666554
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00027 Score=67.85 Aligned_cols=81 Identities=16% Similarity=0.075 Sum_probs=59.6
Q ss_pred hHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEE
Q 021116 133 MEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH 211 (317)
Q Consensus 133 ~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~-Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii 211 (317)
...+.+.+.+.+....... +.++..|||+|.|.|.++..++.+ .+++|++||+|+..+ ..+++.. . .++++++
T Consensus 37 d~~i~~~Iv~~~~l~~~~~-~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~-~~L~~~~-~---~~~l~ii 110 (353)
T 1i4w_A 37 NPTVYNKIFDKLDLTKTYK-HPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLY-KFLNAKF-E---GSPLQIL 110 (353)
T ss_dssp CHHHHHHHHHHHCGGGTCC-CTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHH-HHHHHHT-T---TSSCEEE
T ss_pred CHHHHHHHHHhccCCcccC-cCCCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHH-HHHHHhc-c---CCCEEEE
Confidence 3557777777765421000 013589999999999999988875 356899999999998 8887765 2 2569999
Q ss_pred EecHHHHH
Q 021116 212 TVRVETFL 219 (317)
Q Consensus 212 ~gD~~~~l 219 (317)
++|+.++.
T Consensus 111 ~~D~l~~~ 118 (353)
T 1i4w_A 111 KRDPYDWS 118 (353)
T ss_dssp CSCTTCHH
T ss_pred ECCccchh
Confidence 99998763
|
| >3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=97.56 E-value=6.4e-05 Score=71.36 Aligned_cols=75 Identities=8% Similarity=0.159 Sum_probs=55.4
Q ss_pred CCCeEEEECCCcchHHHHHHHcCC--CEE-EEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCC
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGC--SEV-HFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGP 231 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga--~~V-~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~ 231 (317)
+.-+++|||||.|.+++.+...|. ..| .++|+|+.++ +..+.|.... ++++|+.++.... ++ ...
T Consensus 9 ~~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~-~ty~~N~~~~-------~~~~DI~~~~~~~--i~--~~~ 76 (327)
T 3qv2_A 9 KQVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIAN-KIYSKNFKEE-------VQVKNLDSISIKQ--IE--SLN 76 (327)
T ss_dssp CCEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHH-HHHHHHHCCC-------CBCCCTTTCCHHH--HH--HTC
T ss_pred CCCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHH-HHHHHHCCCC-------cccCChhhcCHHH--hc--cCC
Confidence 345899999999999998777784 567 7999999998 9999886321 4567766543211 00 136
Q ss_pred ccEEEECCCC
Q 021116 232 FDYMSVTPPY 241 (317)
Q Consensus 232 fDlV~~dPPy 241 (317)
+|+++..||.
T Consensus 77 ~Dil~ggpPC 86 (327)
T 3qv2_A 77 CNTWFMSPPC 86 (327)
T ss_dssp CCEEEECCCC
T ss_pred CCEEEecCCc
Confidence 8999999994
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00024 Score=67.88 Aligned_cols=82 Identities=17% Similarity=0.092 Sum_probs=62.2
Q ss_pred CCCCeEEEECCCcchHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCC
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGP 231 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~-G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~ 231 (317)
.++..++|..||.|.-+.+++++ | ..+|+++|.|+.|+ +.++ ++ ..+++++++++..++...+... +-.++
T Consensus 56 ~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al-~~A~-rL----~~~Rv~lv~~nF~~l~~~L~~~-g~~~~ 128 (347)
T 3tka_A 56 RPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAI-AVAK-TI----DDPRFSIIHGPFSALGEYVAER-DLIGK 128 (347)
T ss_dssp CTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHH-HHHT-TC----CCTTEEEEESCGGGHHHHHHHT-TCTTC
T ss_pred CCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHH-HHHH-hh----cCCcEEEEeCCHHHHHHHHHhc-CCCCc
Confidence 46889999999999999988875 3 35899999999999 8873 43 2467999999887765544311 11136
Q ss_pred ccEEEECCCCC
Q 021116 232 FDYMSVTPPYT 242 (317)
Q Consensus 232 fDlV~~dPPy~ 242 (317)
+|.|++|..+.
T Consensus 129 vDgILfDLGVS 139 (347)
T 3tka_A 129 IDGILLDLGVS 139 (347)
T ss_dssp EEEEEEECSCC
T ss_pred ccEEEECCccC
Confidence 99999987665
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=97.47 E-value=9.4e-05 Score=67.32 Aligned_cols=56 Identities=16% Similarity=0.318 Sum_probs=41.3
Q ss_pred eEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCc--------c-------HHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 208 SSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAV--------D-------YEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 208 v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~--------~-------~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
.+++++|+.+++..+ .+++||+||+||||... . +...++.+ .++|+++|.+++++.
T Consensus 5 ~~l~~gD~~~~l~~l-----~~~~vdlI~~DPPY~~~~~~~d~~~~~~~y~~~~~~~l~~~--~~~Lk~~g~i~v~~~ 75 (260)
T 1g60_A 5 NKIHQMNCFDFLDQV-----ENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKV--LDKLDKDGSLYIFNT 75 (260)
T ss_dssp SSEEECCHHHHHHHS-----CTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHH--HHHEEEEEEEEEEEC
T ss_pred CeEEechHHHHHHhc-----cccccCEEEECCCCCCCcccccccCCHHHHHHHHHHHHHHH--HHHhcCCeEEEEEcC
Confidence 458999999988765 24689999999999765 1 22333333 368999999999853
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=97.47 E-value=1.7e-05 Score=73.74 Aligned_cols=107 Identities=12% Similarity=0.005 Sum_probs=62.1
Q ss_pred CCCCeEEEECCCcchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF 232 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~-Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~f 232 (317)
.++.+|||||||+|.++..++.+ ++.+|+++|+.-... ...... +..|. + +..+++++... ...+..|
T Consensus 73 ~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~-~~pi~~-~~~g~-~-ii~~~~~~dv~-------~l~~~~~ 141 (277)
T 3evf_A 73 KLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGH-EKPMNV-QSLGW-N-IITFKDKTDIH-------RLEPVKC 141 (277)
T ss_dssp CCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTC-CCCCCC-CBTTG-G-GEEEECSCCTT-------TSCCCCC
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCc-cccccc-CcCCC-C-eEEEeccceeh-------hcCCCCc
Confidence 35679999999999999877764 666788888873221 111110 11121 2 34455554211 1135689
Q ss_pred cEEEECCCCCCcc-H---HHHHHHHH-HcCCcCCC-eEEEEEeCC
Q 021116 233 DYMSVTPPYTAVD-Y---EVLMAQIS-KSALVGKD-SFIVVEYPL 271 (317)
Q Consensus 233 DlV~~dPPy~~~~-~---~~~l~~L~-~~~lLkpg-G~ivv~~~~ 271 (317)
|+|++|.-.+.+. . ...+..+. ..++|+|| |.+++-.-.
T Consensus 142 DlVlsD~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~ 186 (277)
T 3evf_A 142 DTLLCDIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLA 186 (277)
T ss_dssp SEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESC
T ss_pred cEEEecCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecC
Confidence 9999996434332 1 11111121 23689999 999986554
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=97.39 E-value=2.4e-05 Score=72.80 Aligned_cols=106 Identities=12% Similarity=0.048 Sum_probs=63.2
Q ss_pred CCCCeEEEECCCcchHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEe-cHHHHHHHHhhhcCCCCC
Q 021116 154 LRPGRWLDLYSGTGSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTV-RVETFLERAEQFVGKDGP 231 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas-~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~g-D~~~~l~~~~~~~~~~~~ 231 (317)
.++.+|||||||.|.++..|+. .++..|+++|+..... ..+... +..+. +-+.+... |+..+ ...+
T Consensus 89 k~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~-~~pi~~-~~~g~-~ii~~~~~~dv~~l---------~~~~ 156 (282)
T 3gcz_A 89 KPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGH-EKPIMR-TTLGW-NLIRFKDKTDVFNM---------EVIP 156 (282)
T ss_dssp CCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTS-CCCCCC-CBTTG-GGEEEECSCCGGGS---------CCCC
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCcc-cccccc-ccCCC-ceEEeeCCcchhhc---------CCCC
Confidence 3567999999999999998774 5677899999975432 222210 11121 22333322 43321 3478
Q ss_pred ccEEEECCCCCCcc----HHHHHHHHH-HcCCcCCC--eEEEEEeCC
Q 021116 232 FDYMSVTPPYTAVD----YEVLMAQIS-KSALVGKD--SFIVVEYPL 271 (317)
Q Consensus 232 fDlV~~dPPy~~~~----~~~~l~~L~-~~~lLkpg--G~ivv~~~~ 271 (317)
+|+|++|.-.+.+. ....+..|. +..+|+|| |.+++-.-.
T Consensus 157 ~DvVLSDmApnsG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~ 203 (282)
T 3gcz_A 157 GDTLLCDIGESSPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLC 203 (282)
T ss_dssp CSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESC
T ss_pred cCEEEecCccCCCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEec
Confidence 99999997444332 112111121 23589999 999986654
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00037 Score=67.30 Aligned_cols=70 Identities=16% Similarity=0.033 Sum_probs=53.4
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
.+|.+||||||.+|..+-.++++|+ +|++||..+-. ..+. .. .+++++++|+..+. .....||
T Consensus 210 ~~G~~vlDLGAaPGGWT~~l~~rg~-~V~aVD~~~l~--~~l~----~~---~~V~~~~~d~~~~~-------~~~~~~D 272 (375)
T 4auk_A 210 ANGMWAVDLGACPGGWTYQLVKRNM-WVYSVDNGPMA--QSLM----DT---GQVTWLREDGFKFR-------PTRSNIS 272 (375)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTTC-EEEEECSSCCC--HHHH----TT---TCEEEECSCTTTCC-------CCSSCEE
T ss_pred CCCCEEEEeCcCCCHHHHHHHHCCC-EEEEEEhhhcC--hhhc----cC---CCeEEEeCcccccc-------CCCCCcC
Confidence 3689999999999999999999986 79999987532 2221 11 35899999987753 1246799
Q ss_pred EEEECCC
Q 021116 234 YMSVTPP 240 (317)
Q Consensus 234 lV~~dPP 240 (317)
+|++|.-
T Consensus 273 ~vvsDm~ 279 (375)
T 4auk_A 273 WMVCDMV 279 (375)
T ss_dssp EEEECCS
T ss_pred EEEEcCC
Confidence 9999974
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00018 Score=67.70 Aligned_cols=60 Identities=13% Similarity=0.178 Sum_probs=43.8
Q ss_pred CceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCc---------------cHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 206 DVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAV---------------DYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 206 ~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~---------------~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
++.+++++|+.+.+..+ .+++||+|++||||... .+.+.+..+ .++|+++|.+++++.
T Consensus 13 ~~~~ii~gD~~~~l~~l-----~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~--~rvLk~~G~i~i~~~ 85 (323)
T 1boo_A 13 SNGSMYIGDSLELLESF-----PEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVV--NKKLKPDGSFVVDFG 85 (323)
T ss_dssp SSEEEEESCHHHHGGGS-----CSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHH--HHHEEEEEEEEEEEC
T ss_pred CCceEEeCcHHHHHhhC-----CCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHH--HHHCcCCcEEEEEEC
Confidence 45789999998876533 35789999999999754 123333333 468999999999987
Q ss_pred CC
Q 021116 271 LR 272 (317)
Q Consensus 271 ~~ 272 (317)
..
T Consensus 86 d~ 87 (323)
T 1boo_A 86 GA 87 (323)
T ss_dssp CC
T ss_pred CE
Confidence 54
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00022 Score=67.34 Aligned_cols=61 Identities=15% Similarity=0.228 Sum_probs=43.5
Q ss_pred ceEEE-EecHHHHHHHHhhhcCCCCCccEEEECCCCCCc--------cHH-HHHHHHHH-cCCcCCCeEEEEEeCCC
Q 021116 207 VSSIH-TVRVETFLERAEQFVGKDGPFDYMSVTPPYTAV--------DYE-VLMAQISK-SALVGKDSFIVVEYPLR 272 (317)
Q Consensus 207 ~v~ii-~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~--------~~~-~~l~~L~~-~~lLkpgG~ivv~~~~~ 272 (317)
..+++ ++|+.+++..+ .+++||+||+||||... .+. .+...+.. .++|+++|.+++++...
T Consensus 38 ~~~l~i~gD~l~~L~~l-----~~~svDlI~tDPPY~~~~d~~~~~~~~~~~~~~~l~~~~rvLk~~G~i~i~~~~~ 109 (319)
T 1eg2_A 38 TRHVYDVCDCLDTLAKL-----PDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGGLQ 109 (319)
T ss_dssp EEEEEEECCHHHHHHTS-----CTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEECSC
T ss_pred cceEEECCcHHHHHHhC-----ccCCcCEEEECCCCCCCCCCccCHHHHHHHHHHHHHHHHHHcCCCeEEEEEcCcc
Confidence 36788 99999988654 24689999999999754 122 22222222 46899999999998755
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00032 Score=66.15 Aligned_cols=61 Identities=20% Similarity=0.193 Sum_probs=46.6
Q ss_pred hHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCH---HHHHHHHHHhHHHhC
Q 021116 133 MEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDP---WVVSNVLIPNLEWTG 203 (317)
Q Consensus 133 ~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~---~al~~~ar~N~~~~g 203 (317)
...+.+.+..... .++..|||+|||+|+.+++|...|. +.+++|+++ ..+ +.++++++..+
T Consensus 228 p~~l~~~~i~~~~--------~~~~~vlDpF~GsGtt~~aa~~~~r-~~ig~e~~~~~~~~~-~~~~~Rl~~~~ 291 (319)
T 1eg2_A 228 PAAVIERLVRALS--------HPGSTVLDFFAGSGVTARVAIQEGR-NSICTDAAPVFKEYY-QKQLTFLQDDG 291 (319)
T ss_dssp CHHHHHHHHHHHS--------CTTCEEEETTCTTCHHHHHHHHHTC-EEEEEESSTHHHHHH-HHHHHHC----
T ss_pred CHHHHHHHHHHhC--------CCCCEEEecCCCCCHHHHHHHHcCC-cEEEEECCccHHHHH-HHHHHHHHHcc
Confidence 3445555555442 3688999999999999999988874 799999999 998 99999987665
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00057 Score=63.31 Aligned_cols=59 Identities=17% Similarity=0.277 Sum_probs=41.2
Q ss_pred ceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCc-c-------------HHHHHH----HHH-HcCCcCCCeEEEE
Q 021116 207 VSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAV-D-------------YEVLMA----QIS-KSALVGKDSFIVV 267 (317)
Q Consensus 207 ~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~-~-------------~~~~l~----~L~-~~~lLkpgG~ivv 267 (317)
+++++++|+.+++..+ .+++||+|++||||... . +++.+. .+. ..++|+|||.+++
T Consensus 21 ~~~i~~gD~~~~l~~l-----~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i 95 (297)
T 2zig_A 21 VHRLHVGDAREVLASF-----PEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVI 95 (297)
T ss_dssp CEEEEESCHHHHHTTS-----CTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred CCEEEECcHHHHHhhC-----CCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEE
Confidence 4789999999876533 24689999999999632 1 122221 111 2478999999999
Q ss_pred EeC
Q 021116 268 EYP 270 (317)
Q Consensus 268 ~~~ 270 (317)
++.
T Consensus 96 ~~~ 98 (297)
T 2zig_A 96 VVG 98 (297)
T ss_dssp EEC
T ss_pred EEC
Confidence 876
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=96.93 E-value=0.00062 Score=62.11 Aligned_cols=101 Identities=11% Similarity=0.051 Sum_probs=65.1
Q ss_pred CCCCeEEEECCCcchHHHHHH-HcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEe-cHHHHHHHHhhhcCCCCC
Q 021116 154 LRPGRWLDLYSGTGSVGIEAI-SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTV-RVETFLERAEQFVGKDGP 231 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaa-s~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~g-D~~~~l~~~~~~~~~~~~ 231 (317)
.++.+|+||||++|..+-.++ ..|+.+|+++|+...-. +.- ...+..|. +.+++.++ |++.. ...+
T Consensus 77 ~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~gh-e~P-~~~~s~gw-n~v~fk~gvDv~~~---------~~~~ 144 (267)
T 3p8z_A 77 IPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGH-EEP-VPMSTYGW-NIVKLMSGKDVFYL---------PPEK 144 (267)
T ss_dssp CCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTS-CCC-CCCCCTTT-TSEEEECSCCGGGC---------CCCC
T ss_pred CCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCc-cCc-chhhhcCc-CceEEEeccceeec---------CCcc
Confidence 357799999999999998655 46788999999987653 211 12344565 45899998 98543 2367
Q ss_pred ccEEEECCCCCCcc----HHHHHHHHH-HcCCcCCCeEEEE
Q 021116 232 FDYMSVTPPYTAVD----YEVLMAQIS-KSALVGKDSFIVV 267 (317)
Q Consensus 232 fDlV~~dPPy~~~~----~~~~l~~L~-~~~lLkpgG~ivv 267 (317)
+|+|++|---..+. ....+..|. ..+||+++ -+++
T Consensus 145 ~DtllcDIgeSs~~~~vE~~RtlrvLela~~wL~~~-~fc~ 184 (267)
T 3p8z_A 145 CDTLLCDIGESSPSPTVEESRTIRVLKMVEPWLKNN-QFCI 184 (267)
T ss_dssp CSEEEECCCCCCSCHHHHHHHHHHHHHHHGGGCSSC-EEEE
T ss_pred ccEEEEecCCCCCChhhhhhHHHHHHHHHHHhcccC-CEEE
Confidence 99999995223222 122233332 23689884 4444
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=96.90 E-value=0.00017 Score=67.57 Aligned_cols=106 Identities=17% Similarity=0.086 Sum_probs=61.8
Q ss_pred CCCCeEEEECCCcchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEe-cHHHHHHHHhhhcCCCCC
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTV-RVETFLERAEQFVGKDGP 231 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~-Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~g-D~~~~l~~~~~~~~~~~~ 231 (317)
.++.+||||||++|.++-.++.+ |+..|+++|+..... ...+. .+..+. +-+.+..+ |+..+ ....
T Consensus 80 ~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~-~~P~~-~~~~~~-~iv~~~~~~di~~l---------~~~~ 147 (300)
T 3eld_A 80 RITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGH-EKPIH-MQTLGW-NIVKFKDKSNVFTM---------PTEP 147 (300)
T ss_dssp CCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTS-CCCCC-CCBTTG-GGEEEECSCCTTTS---------CCCC
T ss_pred CCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEeccccc-ccccc-ccccCC-ceEEeecCceeeec---------CCCC
Confidence 46889999999999999988864 677899999965321 11100 001111 21223222 33221 2468
Q ss_pred ccEEEECCCCCCccH--HH--HHHHHH-HcCCcCCC-eEEEEEeCC
Q 021116 232 FDYMSVTPPYTAVDY--EV--LMAQIS-KSALVGKD-SFIVVEYPL 271 (317)
Q Consensus 232 fDlV~~dPPy~~~~~--~~--~l~~L~-~~~lLkpg-G~ivv~~~~ 271 (317)
+|+|++|.-.+.+.. +. .+..|. +..+|+|| |.+++-.-.
T Consensus 148 ~DlVlsD~APnsG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~ 193 (300)
T 3eld_A 148 SDTLLCDIGESSSNPLVERDRTMKVLENFERWKHVNTENFCVKVLA 193 (300)
T ss_dssp CSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESS
T ss_pred cCEEeecCcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecc
Confidence 999999963334321 11 111121 23589999 999986553
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0003 Score=64.75 Aligned_cols=99 Identities=11% Similarity=0.057 Sum_probs=58.5
Q ss_pred CCCCeEEEECCCcchHHHHHHHc-CC----CEEEEEe--CCHHHHHHHHHHhHHHhCCCCceEEEEe-cHHHHHHHHhhh
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISR-GC----SEVHFVE--MDPWVVSNVLIPNLEWTGFLDVSSIHTV-RVETFLERAEQF 225 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~-Ga----~~V~aVD--in~~al~~~ar~N~~~~gl~~~v~ii~g-D~~~~l~~~~~~ 225 (317)
.++.+|+||||+.|+.+..|+.+ +. ..|+++| +.|... . ..|+ +-+.++++ |+.+.
T Consensus 72 kpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~~~P~~~-------~-~~Gv-~~i~~~~G~Df~~~------- 135 (269)
T 2px2_A 72 QPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHEEPMLM-------Q-SYGW-NIVTMKSGVDVFYK------- 135 (269)
T ss_dssp CCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTSCCCCCC-------C-STTG-GGEEEECSCCGGGS-------
T ss_pred CCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccccccCCCcc-------c-CCCc-eEEEeeccCCccCC-------
Confidence 46899999999999999988775 22 2355555 222110 0 0122 22456667 98762
Q ss_pred cCCCCCccEEEECCCCCCcc----HHHHHHHHH-HcCCcCCCe-EEEEEeC
Q 021116 226 VGKDGPFDYMSVTPPYTAVD----YEVLMAQIS-KSALVGKDS-FIVVEYP 270 (317)
Q Consensus 226 ~~~~~~fDlV~~dPPy~~~~----~~~~l~~L~-~~~lLkpgG-~ivv~~~ 270 (317)
...++|+|++|.--..+. ....+..|. +.++|++|| .+++-.-
T Consensus 136 --~~~~~DvVLSDMAPnSG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVF 184 (269)
T 2px2_A 136 --PSEISDTLLCDIGESSPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKIL 184 (269)
T ss_dssp --CCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEES
T ss_pred --CCCCCCEEEeCCCCCCCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEEC
Confidence 235799999996323332 222222221 225899999 7776443
|
| >4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A* | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0044 Score=64.71 Aligned_cols=57 Identities=21% Similarity=0.352 Sum_probs=41.6
Q ss_pred CCeEEEECCCcchHHHHHHHcC------CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHH
Q 021116 156 PGRWLDLYSGTGSVGIEAISRG------CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL 219 (317)
Q Consensus 156 ~~rVLDlgcGtG~l~Ieaas~G------a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l 219 (317)
.-+|+|||||.|.+++-+-..| ..-+.++|+|+.|+ +.-+.|.- + ..+++.|+.+++
T Consensus 212 ~ltvIDLFAG~GGls~Gfe~AG~~~~~~f~vv~AvE~d~~A~-~Ty~~Nhp-----~-~~~~~~di~~i~ 274 (784)
T 4ft4_B 212 TATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFAC-QSLKYNHP-----Q-TEVRNEKADEFL 274 (784)
T ss_dssp EEEEEEETCTTSHHHHHHHHHHHHHTEEEEEEEEEESCHHHH-HHHHHHCT-----T-SEEEESCHHHHH
T ss_pred CCeEEEeCcCccHHHHHHHHhCcccCCceeEEEEEeCCHHHH-HHHHHHCC-----C-CceecCcHHHhh
Confidence 4579999999999876544333 45689999999998 88877742 1 456777776653
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0038 Score=60.62 Aligned_cols=58 Identities=17% Similarity=0.147 Sum_probs=46.1
Q ss_pred CCCCeEEEECCCcchHHHHHH-Hc-C-CCEEEEEeCCHHHHHHHHHHhHHH--hCCC-CceEEEE
Q 021116 154 LRPGRWLDLYSGTGSVGIEAI-SR-G-CSEVHFVEMDPWVVSNVLIPNLEW--TGFL-DVSSIHT 212 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaa-s~-G-a~~V~aVDin~~al~~~ar~N~~~--~gl~-~~v~ii~ 212 (317)
.++..|+|+||+.|..++.++ .. + ..+|+++|.+|..+ +.+++|++. |+.. +++++++
T Consensus 225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~-~~L~~n~~~~~N~~~~~~v~~~~ 288 (409)
T 2py6_A 225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINL-QTLQNVLRRYTDTNFASRITVHG 288 (409)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHH-HHHHHHHHHTTTSTTGGGEEEEC
T ss_pred CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHH-HHHHHHHHhhhccCCCCCEEEEE
Confidence 467899999999999999876 33 3 36899999999998 999999998 4333 4465554
|
| >3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A* | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0044 Score=66.78 Aligned_cols=81 Identities=20% Similarity=0.215 Sum_probs=58.4
Q ss_pred CCCeEEEECCCcchHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHh-----hhc--
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGC-SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAE-----QFV-- 226 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga-~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~-----~~~-- 226 (317)
..-+++|||||.|.+++-+-..|. ..|.++|+++.++ +.-+.|.- + ..++.+|+.++..... ...
T Consensus 539 ~~l~~iDLFaG~GGlslGl~~AG~~~vv~avEid~~A~-~ty~~N~p-----~-~~~~~~DI~~l~~~~~~~di~~~~~~ 611 (1002)
T 3swr_A 539 PKLRTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAA-QAFRLNNP-----G-STVFTEDCNILLKLVMAGETTNSRGQ 611 (1002)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHTSEEEEEEECSSHHHH-HHHHHHCT-----T-SEEECSCHHHHHHHHHHTCSBCTTCC
T ss_pred CCCeEEEeccCccHHHHHHHHCCCCceEEEEECCHHHH-HHHHHhCC-----C-CccccccHHHHhhhccchhhhhhhhh
Confidence 345899999999999987767786 5688999999998 88777742 2 4678889877643210 000
Q ss_pred --CCCCCccEEEECCCCC
Q 021116 227 --GKDGPFDYMSVTPPYT 242 (317)
Q Consensus 227 --~~~~~fDlV~~dPPy~ 242 (317)
...+.+|+|+..||..
T Consensus 612 ~lp~~~~vDll~GGpPCQ 629 (1002)
T 3swr_A 612 RLPQKGDVEMLCGGPPCQ 629 (1002)
T ss_dssp BCCCTTTCSEEEECCCCT
T ss_pred hcccCCCeeEEEEcCCCc
Confidence 0124689999999963
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0009 Score=62.77 Aligned_cols=102 Identities=11% Similarity=-0.007 Sum_probs=61.5
Q ss_pred CCCCeEEEECCCcchHHHHHH-HcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEe-cHHHHHHHHhhhcCCCCC
Q 021116 154 LRPGRWLDLYSGTGSVGIEAI-SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTV-RVETFLERAEQFVGKDGP 231 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaa-s~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~g-D~~~~l~~~~~~~~~~~~ 231 (317)
..+.+||||||++|.++-.++ ..|+.+|+|+|+...-- +.-+ ..+.++. +-+.++++ |+... ...+
T Consensus 93 ~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~h-e~P~-~~~ql~w-~lV~~~~~~Dv~~l---------~~~~ 160 (321)
T 3lkz_A 93 EPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGH-EEPQ-LVQSYGW-NIVTMKSGVDVFYR---------PSEC 160 (321)
T ss_dssp CCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTS-CCCC-CCCBTTG-GGEEEECSCCTTSS---------CCCC
T ss_pred CCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCc-cCcc-hhhhcCC-cceEEEeccCHhhC---------CCCC
Confidence 356799999999999998555 46778899999987631 1000 0112222 12778877 87543 2367
Q ss_pred ccEEEECCCCCCcc----HHHHHHHHH-HcCCcCCC-eEEEE
Q 021116 232 FDYMSVTPPYTAVD----YEVLMAQIS-KSALVGKD-SFIVV 267 (317)
Q Consensus 232 fDlV~~dPPy~~~~----~~~~l~~L~-~~~lLkpg-G~ivv 267 (317)
+|+|++|---..+. ....+..|. ..+||++| |-+++
T Consensus 161 ~D~ivcDigeSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~ 202 (321)
T 3lkz_A 161 CDTLLCDIGESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCV 202 (321)
T ss_dssp CSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CCEEEEECccCCCChhhhhhHHHHHHHHHHHHhccCCCcEEE
Confidence 99999996422222 122232221 12588887 66655
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0078 Score=56.65 Aligned_cols=127 Identities=12% Similarity=-0.010 Sum_probs=75.4
Q ss_pred CCeEEEECCCcchHHHHHH----HcC-CC--EEEEEeCCH--------HHH---HHHHHHhHHHhCCCCc--eEEEEecH
Q 021116 156 PGRWLDLYSGTGSVGIEAI----SRG-CS--EVHFVEMDP--------WVV---SNVLIPNLEWTGFLDV--SSIHTVRV 215 (317)
Q Consensus 156 ~~rVLDlgcGtG~l~Ieaa----s~G-a~--~V~aVDin~--------~al---~~~ar~N~~~~gl~~~--v~ii~gD~ 215 (317)
.-+|||+|=|||...+.++ +.+ .. +.+.+|.++ +.+ .+....+...+. .++ .+++.+|+
T Consensus 97 ~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~-~~~v~L~l~~GDa 175 (308)
T 3vyw_A 97 VIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYE-GERLSLKVLLGDA 175 (308)
T ss_dssp EEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEE-CSSEEEEEEESCH
T ss_pred CcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCcccc-CCcEEEEEEechH
Confidence 3579999999998665432 222 22 456666532 111 022222211111 122 46788999
Q ss_pred HHHHHHHhhhcCCCCCccEEEECCCCCC---cc--HHHHHHHHHHcCCcCCCeEEEEEeCCCCCc--cccCCCeEEEEEe
Q 021116 216 ETFLERAEQFVGKDGPFDYMSVTPPYTA---VD--YEVLMAQISKSALVGKDSFIVVEYPLRTDM--LDTCGCLVKIKDR 288 (317)
Q Consensus 216 ~~~l~~~~~~~~~~~~fDlV~~dPPy~~---~~--~~~~l~~L~~~~lLkpgG~ivv~~~~~~~l--~~~~~~~~~~~~r 288 (317)
.+.+..+ ....||+|++|+ |.. .. -+++++.+. ++++|||++...+... .+ .....||.+.+..
T Consensus 176 ~~~l~~l-----~~~~~Da~flDg-FsP~kNPeLWs~e~f~~l~--~~~~pgg~laTYtaag-~VRR~L~~aGF~V~k~~ 246 (308)
T 3vyw_A 176 RKRIKEV-----ENFKADAVFHDA-FSPYKNPELWTLDFLSLIK--ERIDEKGYWVSYSSSL-SVRKSLLTLGFKVGSSR 246 (308)
T ss_dssp HHHGGGC-----CSCCEEEEEECC-SCTTTSGGGGSHHHHHHHH--TTEEEEEEEEESCCCH-HHHHHHHHTTCEEEEEE
T ss_pred HHHHhhh-----cccceeEEEeCC-CCcccCcccCCHHHHHHHH--HHhCCCcEEEEEeCcH-HHHHHHHHCCCEEEecC
Confidence 9887654 235799999997 332 11 267888876 5899999998755432 21 1235899998888
Q ss_pred ecCc
Q 021116 289 RFGR 292 (317)
Q Consensus 289 ~yG~ 292 (317)
.||.
T Consensus 247 G~g~ 250 (308)
T 3vyw_A 247 EIGR 250 (308)
T ss_dssp CC--
T ss_pred CCCC
Confidence 8885
|
| >3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A* | Back alignment and structure |
|---|
Probab=96.28 E-value=0.011 Score=65.49 Aligned_cols=80 Identities=19% Similarity=0.247 Sum_probs=58.8
Q ss_pred CCCeEEEECCCcchHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHh----------
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGC-SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAE---------- 223 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga-~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~---------- 223 (317)
..-+++|||||.|.+++-+-..|. ..|.++|+++.|+ +.-+.|.. + ..++.+|+.++.....
T Consensus 850 ~~l~viDLFsG~GGlslGfe~AG~~~vv~avEid~~A~-~ty~~N~p-----~-~~~~~~DI~~l~~~~~~gdi~~~~~~ 922 (1330)
T 3av4_A 850 PKLRTLDVFSGCGGLSEGFHQAGISETLWAIEMWDPAA-QAFRLNNP-----G-TTVFTEDCNVLLKLVMAGEVTNSLGQ 922 (1330)
T ss_dssp CCEEEEEETCTTSHHHHHHHHTTSEEEEEEECCSHHHH-HHHHHHCT-----T-SEEECSCHHHHHHHHTTTCSBCSSCC
T ss_pred CCceEEecccCccHHHHHHHHCCCCceEEEEECCHHHH-HHHHHhCC-----C-CcEeeccHHHHhHhhhccchhhhhhh
Confidence 346899999999999987777786 5689999999998 88877741 2 4577889887654321
Q ss_pred hhcCCCCCccEEEECCCCC
Q 021116 224 QFVGKDGPFDYMSVTPPYT 242 (317)
Q Consensus 224 ~~~~~~~~fDlV~~dPPy~ 242 (317)
.++ ..+.+|+|+..||..
T Consensus 923 ~lp-~~~~vDvl~GGpPCQ 940 (1330)
T 3av4_A 923 RLP-QKGDVEMLCGGPPCQ 940 (1330)
T ss_dssp BCC-CTTTCSEEEECCCCT
T ss_pred hcc-ccCccceEEecCCCc
Confidence 000 123689999999964
|
| >4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans} | Back alignment and structure |
|---|
Probab=95.94 E-value=0.0041 Score=60.59 Aligned_cols=44 Identities=11% Similarity=-0.061 Sum_probs=36.0
Q ss_pred CCeEEEECCCcchHHHHHHHcC--CCE----EEEEeCCHHHHHHHHHHhHH
Q 021116 156 PGRWLDLYSGTGSVGIEAISRG--CSE----VHFVEMDPWVVSNVLIPNLE 200 (317)
Q Consensus 156 ~~rVLDlgcGtG~l~Ieaas~G--a~~----V~aVDin~~al~~~ar~N~~ 200 (317)
.-+|+|||||.|++...+-..| ..- |.++|+|+.|+ +.-+.|..
T Consensus 10 ~lrvldLFsGiGG~~~Gl~~aG~~~~~~~~~v~avEid~~A~-~ty~~n~~ 59 (403)
T 4dkj_A 10 VIKVFEAFAGIGSQFKALKNIARSKNWEIQHSGMVEWFVDAI-VSYVAIHS 59 (403)
T ss_dssp EEEEEEETCTTCHHHHHHHHHHHHHTEEEEEEEEECCBHHHH-HHHHHHHC
T ss_pred cceEEEEecCcCHHHHHHHHhCCccccceeeEEEEecCHHHH-HHHHHHcC
Confidence 3589999999999988665556 344 88999999998 88888864
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=95.84 E-value=0.016 Score=54.50 Aligned_cols=111 Identities=11% Similarity=-0.006 Sum_probs=67.4
Q ss_pred HHHHHHHHhhcCCCCCCCCCCeEEEECC------CcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEE
Q 021116 137 KGAAFDILQSAGGCPASLRPGRWLDLYS------GTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSI 210 (317)
Q Consensus 137 ~~alf~~L~~~~~~~~~~~~~rVLDlgc------GtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~i 210 (317)
..++++.|....-+ ...+.+|||+|| -.|+.-+.-+......|+++|+++-.. ..+ .+
T Consensus 93 ytqlcqyl~~~~~~--vp~gmrVLDLGA~s~kg~APGS~VLr~~~p~g~~VVavDL~~~~s------------da~--~~ 156 (344)
T 3r24_A 93 YTQLCQYLNTLTLA--VPYNMRVIHFGAGSDKGVAPGTAVLRQWLPTGTLLVDSDLNDFVS------------DAD--ST 156 (344)
T ss_dssp HHHHHHHHTTSCCC--CCTTCEEEEESCCCTTSBCHHHHHHHHHSCTTCEEEEEESSCCBC------------SSS--EE
T ss_pred HHHHHHHhccccEe--ecCCCEEEeCCCCCCCCCCCcHHHHHHhCCCCcEEEEeeCccccc------------CCC--eE
Confidence 34678888553211 146899999997 556633222211113899999998431 112 35
Q ss_pred EEecHHHHHHHHhhhcCCCCCccEEEECCCCC-Cc-----------cHHHHHHHHHHcCCcCCCeEEEEEeCCCC
Q 021116 211 HTVRVETFLERAEQFVGKDGPFDYMSVTPPYT-AV-----------DYEVLMAQISKSALVGKDSFIVVEYPLRT 273 (317)
Q Consensus 211 i~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~-~~-----------~~~~~l~~L~~~~lLkpgG~ivv~~~~~~ 273 (317)
+++|+.+.. ...+||+|+.|.--. .+ ..+..++... ..|++||.+++-.-..+
T Consensus 157 IqGD~~~~~--------~~~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~--~~LkpGGsFvVKVFQGs 221 (344)
T 3r24_A 157 LIGDCATVH--------TANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIK--QKLALGGSIAVKITEHS 221 (344)
T ss_dssp EESCGGGEE--------ESSCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHH--HHEEEEEEEEEEECSSS
T ss_pred EEccccccc--------cCCCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHH--HhCcCCCEEEEEEecCC
Confidence 999976532 237899999996322 12 1244444443 48999999998765443
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=95.36 E-value=0.012 Score=60.43 Aligned_cols=131 Identities=13% Similarity=0.015 Sum_probs=77.6
Q ss_pred CCCeEEEECCCcchHHHHHHHc-----------CC--CEEEEEeCCHHHHHHHHHHhH--------------HH------
Q 021116 155 RPGRWLDLYSGTGSVGIEAISR-----------GC--SEVHFVEMDPWVVSNVLIPNL--------------EW------ 201 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~-----------Ga--~~V~aVDin~~al~~~ar~N~--------------~~------ 201 (317)
+.-+|+|+|-|+|...+.++.. .. -+++.+|..|... +.+++-+ +.
T Consensus 58 ~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~-~~l~~~~~~~~~~~~~~~~l~~~~~~~~~ 136 (689)
T 3pvc_A 58 QSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHV-ADLASAHARWPELASFAEQLRAQWPLPLA 136 (689)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCH-HHHHHHHTTCGGGHHHHHHHHHTCCCCCS
T ss_pred CceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCH-HHHHHHHHhCcchhHHHHHHHHhCcccCC
Confidence 3468999999999888765432 11 3789999955332 2222211 11
Q ss_pred ----hCCCC---ceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCC----cc-HHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 202 ----TGFLD---VSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTA----VD-YEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 202 ----~gl~~---~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~----~~-~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
..+++ .++++.||+.+.+..+.. .....+|.+|+|+ |.. .. -.+++..+. +++++||.+....
T Consensus 137 ~~~r~~~~~~~~~l~l~~gd~~~~l~~~~~--~~~~~~da~flD~-f~p~~np~~w~~~~~~~l~--~~~~~g~~~~t~~ 211 (689)
T 3pvc_A 137 GCHRILLADGAITLDLWFGDVNTLLPTLDD--SLNNQVDAWFLDG-FAPAKNPDMWNEQLFNAMA--RMTRPGGTFSTFT 211 (689)
T ss_dssp EEEEEEETTTTEEEEEEESCHHHHGGGCCG--GGTTCEEEEEECS-SCC--CCTTCSHHHHHHHH--HHEEEEEEEEESC
T ss_pred CceEEEecCCcEEEEEEccCHHHHHhhccc--ccCCceeEEEECC-CCCCCChhhhhHHHHHHHH--HHhCCCCEEEecc
Confidence 11122 467889999988754310 0136799999997 321 11 256677765 3788999876543
Q ss_pred CCCCCcc--ccCCCeEEEEEeecCc
Q 021116 270 PLRTDML--DTCGCLVKIKDRRFGR 292 (317)
Q Consensus 270 ~~~~~l~--~~~~~~~~~~~r~yG~ 292 (317)
. ...+. ....||.+.+-+.+|.
T Consensus 212 ~-~~~vr~~l~~aGf~~~~~~~~~~ 235 (689)
T 3pvc_A 212 A-AGFVRRGLQQAGFNVTKVKGFGQ 235 (689)
T ss_dssp C-CHHHHHHHHHTTCEEEEEECSSS
T ss_pred C-cHHHHHHHHhCCeEEEeccCCCc
Confidence 3 22221 1247787766666664
|
| >3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A* | Back alignment and structure |
|---|
Probab=95.25 E-value=0.24 Score=45.27 Aligned_cols=108 Identities=12% Similarity=0.032 Sum_probs=70.3
Q ss_pred CCeEEEECCCcchHHHHHHHc-------C-CCEEEEEe-----CCH----------------------HHHHH--HHHHh
Q 021116 156 PGRWLDLYSGTGSVGIEAISR-------G-CSEVHFVE-----MDP----------------------WVVSN--VLIPN 198 (317)
Q Consensus 156 ~~rVLDlgcGtG~l~Ieaas~-------G-a~~V~aVD-----in~----------------------~al~~--~ar~N 198 (317)
...|+++|+..|...+.++.. + ..+|+++| -.+ +.+.+ ..++|
T Consensus 70 pG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~~ 149 (257)
T 3tos_A 70 PGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHEC 149 (257)
T ss_dssp CSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHHT
T ss_pred CCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHhh
Confidence 457999999999887764431 2 35799999 221 11201 12344
Q ss_pred HHHhCC-CCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCccHHH---HHHHHHHcCCcCCCeEEEEEeC
Q 021116 199 LEWTGF-LDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEV---LMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 199 ~~~~gl-~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~---~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
.+..+. .++++++.|++.+.+..+.. .....+||+|++|. . .|+. .++.+. ++|.+||+|++..-
T Consensus 150 ~~~~g~~~~~i~li~G~~~dTL~~~l~-~~~~~~~dlv~ID~--D--~Y~~t~~~le~~~--p~l~~GGvIv~DD~ 218 (257)
T 3tos_A 150 SDFFGHVTQRSVLVEGDVRETVPRYLA-ENPQTVIALAYFDL--D--LYEPTKAVLEAIR--PYLTKGSIVAFDEL 218 (257)
T ss_dssp TSTTTTSCCSEEEEESCHHHHHHHHHH-HCTTCCEEEEEECC--C--CHHHHHHHHHHHG--GGEEEEEEEEESST
T ss_pred hhhcCCCCCcEEEEEecHHHHHHHHHH-hCCCCceEEEEEcC--c--ccchHHHHHHHHH--HHhCCCcEEEEcCC
Confidence 455665 47899999999988765421 01235799999996 2 3444 455544 58999999998663
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.13 E-value=0.068 Score=50.31 Aligned_cols=96 Identities=14% Similarity=0.103 Sum_probs=58.9
Q ss_pred CCCCeEEEECCCc-chHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEe---cHHHHHHHHhhhcCC
Q 021116 154 LRPGRWLDLYSGT-GSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTV---RVETFLERAEQFVGK 228 (317)
Q Consensus 154 ~~~~rVLDlgcGt-G~l~Ieaas-~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~g---D~~~~l~~~~~~~~~ 228 (317)
.++++||-.|||. |.+++.+++ .|+.+|+++|.+++.+ +.+++ +|.+ .++.. |+.+.+....
T Consensus 189 ~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~-~~a~~----lGa~---~vi~~~~~~~~~~~~~~~----- 255 (371)
T 1f8f_A 189 TPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRL-ELAKQ----LGAT---HVINSKTQDPVAAIKEIT----- 255 (371)
T ss_dssp CTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHH-HHHHH----HTCS---EEEETTTSCHHHHHHHHT-----
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHH-HHHHH----cCCC---EEecCCccCHHHHHHHhc-----
Confidence 4688999998764 555555444 5776899999999987 77753 4542 23332 3333332221
Q ss_pred CCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 229 ~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
.+.+|+||-.-. . ...++... +.|+++|++++.-
T Consensus 256 ~gg~D~vid~~g----~-~~~~~~~~--~~l~~~G~iv~~G 289 (371)
T 1f8f_A 256 DGGVNFALESTG----S-PEILKQGV--DALGILGKIAVVG 289 (371)
T ss_dssp TSCEEEEEECSC----C-HHHHHHHH--HTEEEEEEEEECC
T ss_pred CCCCcEEEECCC----C-HHHHHHHH--HHHhcCCEEEEeC
Confidence 237999986431 1 22333332 3789999988754
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=94.96 E-value=0.12 Score=49.58 Aligned_cols=19 Identities=26% Similarity=0.321 Sum_probs=16.5
Q ss_pred CCeEEEECCCcchHHHHHH
Q 021116 156 PGRWLDLYSGTGSVGIEAI 174 (317)
Q Consensus 156 ~~rVLDlgcGtG~l~Ieaa 174 (317)
.-+|+|+|||+|..++.++
T Consensus 53 ~~~IaDlGCssG~Nt~~~v 71 (374)
T 3b5i_A 53 PFTAVDLGCSSGANTVHII 71 (374)
T ss_dssp CEEEEEETCCSSHHHHHHH
T ss_pred ceEEEecCCCCChhHHHHH
Confidence 5789999999999998663
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=94.49 E-value=0.18 Score=47.17 Aligned_cols=99 Identities=10% Similarity=-0.010 Sum_probs=58.3
Q ss_pred CCCCeEEEECCCc-chHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEec---HHHHHHHHhhhcCC
Q 021116 154 LRPGRWLDLYSGT-GSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVR---VETFLERAEQFVGK 228 (317)
Q Consensus 154 ~~~~rVLDlgcGt-G~l~Ieaas-~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD---~~~~l~~~~~~~~~ 228 (317)
.++++||-.|||. |.+++.+++ .|+.+|+++|.+++.+ +.++ .+|.+ .++..+ ..++........
T Consensus 170 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~-~~a~----~lGa~---~vi~~~~~~~~~~~~~i~~~~-- 239 (356)
T 1pl8_A 170 TLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRL-SKAK----EIGAD---LVLQISKESPQEIARKVEGQL-- 239 (356)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHH-HHHH----HTTCS---EEEECSSCCHHHHHHHHHHHH--
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHH-HHHH----HhCCC---EEEcCcccccchHHHHHHHHh--
Confidence 4688999998753 444444444 6776899999999987 7775 35653 234332 233332221111
Q ss_pred CCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 229 ~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
...+|+||-.-. . ...++... +.|+++|++++.-
T Consensus 240 ~~g~D~vid~~g----~-~~~~~~~~--~~l~~~G~iv~~G 273 (356)
T 1pl8_A 240 GCKPEVTIECTG----A-EASIQAGI--YATRSGGTLVLVG 273 (356)
T ss_dssp TSCCSEEEECSC----C-HHHHHHHH--HHSCTTCEEEECS
T ss_pred CCCCCEEEECCC----C-hHHHHHHH--HHhcCCCEEEEEe
Confidence 146999986531 1 22233322 2689999988753
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=94.42 E-value=0.071 Score=51.54 Aligned_cols=77 Identities=12% Similarity=0.023 Sum_probs=44.4
Q ss_pred CCeEEEECCCcchHHHHHHHc------------------CCCEEEEEeCC-----------HHHHHHHHHHhHHHhCCCC
Q 021116 156 PGRWLDLYSGTGSVGIEAISR------------------GCSEVHFVEMD-----------PWVVSNVLIPNLEWTGFLD 206 (317)
Q Consensus 156 ~~rVLDlgcGtG~l~Ieaas~------------------Ga~~V~aVDin-----------~~al~~~ar~N~~~~gl~~ 206 (317)
.-+|+|+||++|..++.+++. .--+|++.|+- +... +.+++ ..|-..
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~-~~~~~---~~g~~~ 128 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFY-RNLEK---ENGRKI 128 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHH-HHHHH---HTCCCT
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhH-hhhhh---hccCCC
Confidence 578999999999999876543 11257777775 3332 22211 122211
Q ss_pred ceEEEEecHHHHHHHHhhhcCCCCCccEEEECCC
Q 021116 207 VSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPP 240 (317)
Q Consensus 207 ~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPP 240 (317)
.-.++.+....|...+ ....++|+|+.+--
T Consensus 129 ~~~f~~gvpgSFy~rl----fp~~S~d~v~Ss~a 158 (384)
T 2efj_A 129 GSCLIGAMPGSFYSRL----FPEESMHFLHSCYC 158 (384)
T ss_dssp TSEEEEECCSCTTSCC----SCTTCEEEEEEESC
T ss_pred CceEEEecchhhhhcc----CCCCceEEEEecce
Confidence 2346666655543222 24678999998543
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.13 E-value=0.15 Score=48.74 Aligned_cols=101 Identities=14% Similarity=0.044 Sum_probs=72.3
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCC-ceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLD-VSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~-~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
.+.+||.++.+.|.+++.++.. .++.+.=+--+. +.++.|++.||+.+ .+++.... .. ....||
T Consensus 38 ~~~~~~~~~d~~gal~~~~~~~---~~~~~~ds~~~~-~~~~~n~~~~~~~~~~~~~~~~~-~~----------~~~~~~ 102 (375)
T 4dcm_A 38 IRGPVLILNDAFGALSCALAEH---KPYSIGDSYISE-LATRENLRLNGIDESSVKFLDST-AD----------YPQQPG 102 (375)
T ss_dssp CCSCEEEECCSSSHHHHHTGGG---CCEEEESCHHHH-HHHHHHHHHTTCCGGGSEEEETT-SC----------CCSSCS
T ss_pred CCCCEEEECCCCCHHHHhhccC---CceEEEhHHHHH-HHHHHHHHHcCCCccceEecccc-cc----------cccCCC
Confidence 3568999999999999876543 256665566665 78899999999974 35554321 11 136799
Q ss_pred EEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCCC
Q 021116 234 YMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 234 lV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~ 272 (317)
+|++-.|-........+..+. ..|.+++.+++.-...
T Consensus 103 ~v~~~lpk~~~~l~~~L~~l~--~~l~~~~~i~~~g~~~ 139 (375)
T 4dcm_A 103 VVLIKVPKTLALLEQQLRALR--KVVTSDTRIIAGAKAR 139 (375)
T ss_dssp EEEEECCSCHHHHHHHHHHHH--TTCCTTSEEEEEEEGG
T ss_pred EEEEEcCCCHHHHHHHHHHHH--hhCCCCCEEEEEeccc
Confidence 999998876656666677765 4789999987765533
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=93.89 E-value=0.18 Score=46.61 Aligned_cols=94 Identities=17% Similarity=0.101 Sum_probs=58.5
Q ss_pred CCCCeEEEECCCc-chHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEE---ecHHHHHHHHhhhcCC
Q 021116 154 LRPGRWLDLYSGT-GSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHT---VRVETFLERAEQFVGK 228 (317)
Q Consensus 154 ~~~~rVLDlgcGt-G~l~Ieaas-~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~---gD~~~~l~~~~~~~~~ 228 (317)
.++++||-.|||. |.+++.+++ .|+ +|+++|.+++.+ +.+++ +|.+ .++. .|..+.+...
T Consensus 165 ~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~-~~~~~----lGa~---~~i~~~~~~~~~~~~~~------ 229 (340)
T 3s2e_A 165 RPGQWVVISGIGGLGHVAVQYARAMGL-RVAAVDIDDAKL-NLARR----LGAE---VAVNARDTDPAAWLQKE------ 229 (340)
T ss_dssp CTTSEEEEECCSTTHHHHHHHHHHTTC-EEEEEESCHHHH-HHHHH----TTCS---EEEETTTSCHHHHHHHH------
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCHHHH-HHHHH----cCCC---EEEeCCCcCHHHHHHHh------
Confidence 4688999998764 566665554 577 899999999987 77653 5653 2233 2333333322
Q ss_pred CCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 229 ~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
.+.+|+||-+-. . .+.++... +.|+++|++++.-
T Consensus 230 ~g~~d~vid~~g----~-~~~~~~~~--~~l~~~G~iv~~G 263 (340)
T 3s2e_A 230 IGGAHGVLVTAV----S-PKAFSQAI--GMVRRGGTIALNG 263 (340)
T ss_dssp HSSEEEEEESSC----C-HHHHHHHH--HHEEEEEEEEECS
T ss_pred CCCCCEEEEeCC----C-HHHHHHHH--HHhccCCEEEEeC
Confidence 147999987631 1 22333332 2689999988754
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=93.79 E-value=0.032 Score=53.47 Aligned_cols=79 Identities=13% Similarity=0.116 Sum_probs=49.6
Q ss_pred CCCeEEEECCCcchHHHHHHHc------------C-----CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHH
Q 021116 155 RPGRWLDLYSGTGSVGIEAISR------------G-----CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~------------G-----a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~ 217 (317)
..-+|+|+||++|..++.+++. + .-+|++.|.-.... ..+-+++..+.-.++..++.+....
T Consensus 51 ~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDF-ntlF~~L~~~~~~~~~~f~~gvpgS 129 (359)
T 1m6e_X 51 TRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDF-NAIFRSLPIENDVDGVCFINGVPGS 129 (359)
T ss_dssp SEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCH-HHHHTTTTTSCSCTTCEEEEEEESC
T ss_pred CceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHH-HHHHHhcchhcccCCCEEEEecchh
Confidence 3467999999999887754332 2 12688999877777 6666666532211123566666554
Q ss_pred HHHHHhhhcCCCCCccEEEEC
Q 021116 218 FLERAEQFVGKDGPFDYMSVT 238 (317)
Q Consensus 218 ~l~~~~~~~~~~~~fDlV~~d 238 (317)
|...+ ....++|+|+.+
T Consensus 130 Fy~rl----fp~~S~d~v~Ss 146 (359)
T 1m6e_X 130 FYGRL----FPRNTLHFIHSS 146 (359)
T ss_dssp SSSCC----SCTTCBSCEEEE
T ss_pred hhhcc----CCCCceEEEEeh
Confidence 43222 346789999974
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=93.63 E-value=0.18 Score=47.03 Aligned_cols=97 Identities=10% Similarity=0.053 Sum_probs=57.1
Q ss_pred CCCCeEEEECCCc-chHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEE---ecHHHHHHHHhhhcCC
Q 021116 154 LRPGRWLDLYSGT-GSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHT---VRVETFLERAEQFVGK 228 (317)
Q Consensus 154 ~~~~rVLDlgcGt-G~l~Ieaas-~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~---gD~~~~l~~~~~~~~~ 228 (317)
.++++||=.|+|. |.+++.+++ .|+.+|+++|.+++.+ +.+++ +|.+ .++. .|..+.+.... .
T Consensus 165 ~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~-~~~~~----lGa~---~vi~~~~~~~~~~v~~~t----~ 232 (352)
T 3fpc_A 165 KLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCC-DIALE----YGAT---DIINYKNGDIVEQILKAT----D 232 (352)
T ss_dssp CTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHH-HHHHH----HTCC---EEECGGGSCHHHHHHHHT----T
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHH-HHHHH----hCCc---eEEcCCCcCHHHHHHHHc----C
Confidence 4688999987643 444444444 5776799999999987 77754 5653 2333 23333333331 1
Q ss_pred CCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 229 ~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
...+|+||-.-.- ...+...++ .|+++|++++.-
T Consensus 233 g~g~D~v~d~~g~-~~~~~~~~~------~l~~~G~~v~~G 266 (352)
T 3fpc_A 233 GKGVDKVVIAGGD-VHTFAQAVK------MIKPGSDIGNVN 266 (352)
T ss_dssp TCCEEEEEECSSC-TTHHHHHHH------HEEEEEEEEECC
T ss_pred CCCCCEEEECCCC-hHHHHHHHH------HHhcCCEEEEec
Confidence 2369999854211 112233332 589999988654
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=93.51 E-value=0.13 Score=49.04 Aligned_cols=101 Identities=12% Similarity=0.040 Sum_probs=58.2
Q ss_pred CCCCeEEEECCCc-chHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEE---ecH-HHHHHHHhhhcC
Q 021116 154 LRPGRWLDLYSGT-GSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHT---VRV-ETFLERAEQFVG 227 (317)
Q Consensus 154 ~~~~rVLDlgcGt-G~l~Ieaas-~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~---gD~-~~~l~~~~~~~~ 227 (317)
.++++||-+|||. |.+++.+++ .|+.+|+++|.+++.+ +.++ .+|. + ++. .|. .+.+....
T Consensus 184 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~-~~a~----~lGa-~---~i~~~~~~~~~~~~~~~~---- 250 (398)
T 2dph_A 184 KPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERL-KLLS----DAGF-E---TIDLRNSAPLRDQIDQIL---- 250 (398)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHH-HHHH----TTTC-E---EEETTSSSCHHHHHHHHH----
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHH-HHHH----HcCC-c---EEcCCCcchHHHHHHHHh----
Confidence 4689999999764 555555554 6876899999999987 7765 3464 2 232 232 23332222
Q ss_pred CCCCccEEEECCCCCCc---------cHHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 228 KDGPFDYMSVTPPYTAV---------DYEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 228 ~~~~fDlV~~dPPy~~~---------~~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
....+|+||-.-.-... .....++... +.|+++|++++.-
T Consensus 251 ~g~g~Dvvid~~g~~~~~~~~~~~~~~~~~~~~~~~--~~l~~gG~iv~~G 299 (398)
T 2dph_A 251 GKPEVDCGVDAVGFEAHGLGDEANTETPNGALNSLF--DVVRAGGAIGIPG 299 (398)
T ss_dssp SSSCEEEEEECSCTTCBCSGGGTTSBCTTHHHHHHH--HHEEEEEEEECCS
T ss_pred CCCCCCEEEECCCCccccccccccccccHHHHHHHH--HHHhcCCEEEEec
Confidence 12369999854321100 0011233322 2689999987643
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=93.35 E-value=0.13 Score=48.48 Aligned_cols=99 Identities=12% Similarity=-0.023 Sum_probs=57.5
Q ss_pred CCCCeEEEECCCc-chHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEE---ecHHHHHHHHhhhcCC
Q 021116 154 LRPGRWLDLYSGT-GSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHT---VRVETFLERAEQFVGK 228 (317)
Q Consensus 154 ~~~~rVLDlgcGt-G~l~Ieaas-~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~---gD~~~~l~~~~~~~~~ 228 (317)
.++++||=.|+|. |.+++.+++ .|+.+|+++|.+++.. +.+++ +|... ++. .|..+.+.... ...
T Consensus 181 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~-~~a~~----lGa~~---vi~~~~~~~~~~i~~~~--~~~ 250 (370)
T 4ej6_A 181 KAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKR-RLAEE----VGATA---TVDPSAGDVVEAIAGPV--GLV 250 (370)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHH-HHHHH----HTCSE---EECTTSSCHHHHHHSTT--SSS
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHH-HHHHH----cCCCE---EECCCCcCHHHHHHhhh--hcc
Confidence 4688999998743 344444443 6877899999999987 77754 56532 232 34333332200 011
Q ss_pred CCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 229 ~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
.+.+|+||-.- +. ...++... +.|+++|.+++.-
T Consensus 251 ~gg~Dvvid~~----G~-~~~~~~~~--~~l~~~G~vv~~G 284 (370)
T 4ej6_A 251 PGGVDVVIECA----GV-AETVKQST--RLAKAGGTVVILG 284 (370)
T ss_dssp TTCEEEEEECS----CC-HHHHHHHH--HHEEEEEEEEECS
T ss_pred CCCCCEEEECC----CC-HHHHHHHH--HHhccCCEEEEEe
Confidence 24799998642 11 22333332 2689999988754
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=92.68 E-value=0.23 Score=42.02 Aligned_cols=95 Identities=9% Similarity=-0.023 Sum_probs=54.7
Q ss_pred CCCCeEEEECC--CcchHHHHHH-HcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEE---ecHHHHHHHHhhhcC
Q 021116 154 LRPGRWLDLYS--GTGSVGIEAI-SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHT---VRVETFLERAEQFVG 227 (317)
Q Consensus 154 ~~~~rVLDlgc--GtG~l~Ieaa-s~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~---gD~~~~l~~~~~~~~ 227 (317)
.++++||..|+ |.|...+..+ ..|+ +|+++|.+++.+ +.+++ .|.. . ++. .|..+.+....
T Consensus 37 ~~g~~vlV~Ga~ggiG~~~~~~~~~~G~-~V~~~~~~~~~~-~~~~~----~g~~--~-~~d~~~~~~~~~~~~~~---- 103 (198)
T 1pqw_A 37 SPGERVLIHSATGGVGMAAVSIAKMIGA-RIYTTAGSDAKR-EMLSR----LGVE--Y-VGDSRSVDFADEILELT---- 103 (198)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHHTC-EEEEEESSHHHH-HHHHT----TCCS--E-EEETTCSTHHHHHHHHT----
T ss_pred CCCCEEEEeeCCChHHHHHHHHHHHcCC-EEEEEeCCHHHH-HHHHH----cCCC--E-EeeCCcHHHHHHHHHHh----
Confidence 46789999984 3444444433 3576 799999999887 66643 4542 1 222 22222222221
Q ss_pred CCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 228 ~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
....+|+||-+. .. ..++... +.|+++|++++.-
T Consensus 104 ~~~~~D~vi~~~--g~----~~~~~~~--~~l~~~G~~v~~g 137 (198)
T 1pqw_A 104 DGYGVDVVLNSL--AG----EAIQRGV--QILAPGGRFIELG 137 (198)
T ss_dssp TTCCEEEEEECC--CT----HHHHHHH--HTEEEEEEEEECS
T ss_pred CCCCCeEEEECC--ch----HHHHHHH--HHhccCCEEEEEc
Confidence 124699999764 21 2333332 3789999988754
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=92.65 E-value=0.38 Score=45.53 Aligned_cols=100 Identities=11% Similarity=0.087 Sum_probs=57.1
Q ss_pred CCCCeEEEECCCc-chHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEe---c-HHHHHHHHhhhcC
Q 021116 154 LRPGRWLDLYSGT-GSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTV---R-VETFLERAEQFVG 227 (317)
Q Consensus 154 ~~~~rVLDlgcGt-G~l~Ieaas-~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~g---D-~~~~l~~~~~~~~ 227 (317)
.++++||-.|||. |.+++.+++ +|+.+|+++|.+++.+ +.+++ +|. + ++.. | +.+.+....
T Consensus 184 ~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~-~~a~~----lGa-~---~i~~~~~~~~~~~v~~~t---- 250 (398)
T 1kol_A 184 GPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARL-AHAKA----QGF-E---IADLSLDTPLHEQIAALL---- 250 (398)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHH-HHHHH----TTC-E---EEETTSSSCHHHHHHHHH----
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHH-HHHHH----cCC-c---EEccCCcchHHHHHHHHh----
Confidence 4688999988643 445555444 6877899999999998 87753 565 2 2221 2 333333322
Q ss_pred CCCCccEEEECCCCCC----------ccHHHHHHHHHHcCCcCCCeEEEEE
Q 021116 228 KDGPFDYMSVTPPYTA----------VDYEVLMAQISKSALVGKDSFIVVE 268 (317)
Q Consensus 228 ~~~~fDlV~~dPPy~~----------~~~~~~l~~L~~~~lLkpgG~ivv~ 268 (317)
....+|+||-.-.... ......++... +.|+++|.+++.
T Consensus 251 ~g~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~G~iv~~ 299 (398)
T 1kol_A 251 GEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLM--QVTRVAGKIGIP 299 (398)
T ss_dssp SSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHH--HHEEEEEEEEEC
T ss_pred CCCCCCEEEECCCCcccccccccccccchHHHHHHHH--HHHhcCCEEEEe
Confidence 1236999985422110 00012233322 268999998764
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=92.54 E-value=0.38 Score=45.15 Aligned_cols=96 Identities=13% Similarity=0.070 Sum_probs=56.9
Q ss_pred CCCCeEEEECCCc-chHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEE-----ecHHHHHHHHhhhc
Q 021116 154 LRPGRWLDLYSGT-GSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHT-----VRVETFLERAEQFV 226 (317)
Q Consensus 154 ~~~~rVLDlgcGt-G~l~Ieaas-~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~-----gD~~~~l~~~~~~~ 226 (317)
.++++||-.|+|. |.+++.+++ .|+.+|+++|.+++.+ +.++ .+|.+ .++. .|+.+.+....
T Consensus 191 ~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~-~~~~----~lGa~---~vi~~~~~~~~~~~~~~~~~--- 259 (374)
T 1cdo_A 191 EPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKF-EKAK----VFGAT---DFVNPNDHSEPISQVLSKMT--- 259 (374)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGH-HHHH----HTTCC---EEECGGGCSSCHHHHHHHHH---
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHH-HHHH----HhCCc---eEEeccccchhHHHHHHHHh---
Confidence 4688999998642 334444443 6776899999999887 7765 35653 2232 12333333322
Q ss_pred CCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCC-eEEEEEe
Q 021116 227 GKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKD-SFIVVEY 269 (317)
Q Consensus 227 ~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpg-G~ivv~~ 269 (317)
.+.+|+||-.-. . ...++... +.|+++ |.+++.-
T Consensus 260 --~~g~D~vid~~g----~-~~~~~~~~--~~l~~~~G~iv~~G 294 (374)
T 1cdo_A 260 --NGGVDFSLECVG----N-VGVMRNAL--ESCLKGWGVSVLVG 294 (374)
T ss_dssp --TSCBSEEEECSC----C-HHHHHHHH--HTBCTTTCEEEECS
T ss_pred --CCCCCEEEECCC----C-HHHHHHHH--HHhhcCCcEEEEEc
Confidence 237999986431 1 22333332 278999 9988654
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=92.22 E-value=0.38 Score=45.11 Aligned_cols=96 Identities=15% Similarity=-0.035 Sum_probs=56.9
Q ss_pred CCCCeEEEECCCc-chHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEE-----ecHHHHHHHHhhhc
Q 021116 154 LRPGRWLDLYSGT-GSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHT-----VRVETFLERAEQFV 226 (317)
Q Consensus 154 ~~~~rVLDlgcGt-G~l~Ieaas-~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~-----gD~~~~l~~~~~~~ 226 (317)
.++++||=+|||. |.+++.+++ .|+.+|+++|.+++.+ +.++ .+|.+ .++. .|+.+.+....
T Consensus 190 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~-~~a~----~lGa~---~vi~~~~~~~~~~~~i~~~t--- 258 (373)
T 1p0f_A 190 TPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKF-PKAI----ELGAT---ECLNPKDYDKPIYEVICEKT--- 258 (373)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGH-HHHH----HTTCS---EEECGGGCSSCHHHHHHHHT---
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHH-HHHH----HcCCc---EEEecccccchHHHHHHHHh---
Confidence 4688999998642 333444343 5776899999999887 7775 35653 2232 12333333321
Q ss_pred CCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCC-eEEEEEe
Q 021116 227 GKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKD-SFIVVEY 269 (317)
Q Consensus 227 ~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpg-G~ivv~~ 269 (317)
.+.+|+||-.- +. ...++... +.|+++ |.+++.-
T Consensus 259 --~gg~Dvvid~~----g~-~~~~~~~~--~~l~~~~G~iv~~G 293 (373)
T 1p0f_A 259 --NGGVDYAVECA----GR-IETMMNAL--QSTYCGSGVTVVLG 293 (373)
T ss_dssp --TSCBSEEEECS----CC-HHHHHHHH--HTBCTTTCEEEECC
T ss_pred --CCCCCEEEECC----CC-HHHHHHHH--HHHhcCCCEEEEEc
Confidence 23799998642 11 22333332 278999 9987654
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=92.09 E-value=1.2 Score=41.46 Aligned_cols=102 Identities=11% Similarity=-0.086 Sum_probs=56.4
Q ss_pred CCCCeEEEECCCc-chHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEE--ecHHHHHHHHhhhcCCC
Q 021116 154 LRPGRWLDLYSGT-GSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHT--VRVETFLERAEQFVGKD 229 (317)
Q Consensus 154 ~~~~rVLDlgcGt-G~l~Ieaas-~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~--gD~~~~l~~~~~~~~~~ 229 (317)
.++++||=.|+|. |.+++.+++ .|+.+|+++|.+++.+ +.+++. . ..-+.... .+-.++......+ ...
T Consensus 178 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~-~~a~~l-~----~~~~~~~~~~~~~~~~~~~v~~~-t~g 250 (363)
T 3m6i_A 178 RLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRL-KFAKEI-C----PEVVTHKVERLSAEESAKKIVES-FGG 250 (363)
T ss_dssp CTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHH-HHHHHH-C----TTCEEEECCSCCHHHHHHHHHHH-TSS
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHH-HHHHHh-c----hhcccccccccchHHHHHHHHHH-hCC
Confidence 4688899888743 444444443 6776699999999998 888754 1 12122211 1122222222111 123
Q ss_pred CCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 230 GPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 230 ~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
..+|+||-.- +. ...++... +.|+++|++++.-
T Consensus 251 ~g~Dvvid~~----g~-~~~~~~~~--~~l~~~G~iv~~G 283 (363)
T 3m6i_A 251 IEPAVALECT----GV-ESSIAAAI--WAVKFGGKVFVIG 283 (363)
T ss_dssp CCCSEEEECS----CC-HHHHHHHH--HHSCTTCEEEECC
T ss_pred CCCCEEEECC----CC-hHHHHHHH--HHhcCCCEEEEEc
Confidence 4699998642 11 22233322 2689999988754
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=92.06 E-value=0.46 Score=44.56 Aligned_cols=96 Identities=11% Similarity=-0.014 Sum_probs=56.5
Q ss_pred CCCCeEEEECCCc-chHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEE-----ecHHHHHHHHhhhc
Q 021116 154 LRPGRWLDLYSGT-GSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHT-----VRVETFLERAEQFV 226 (317)
Q Consensus 154 ~~~~rVLDlgcGt-G~l~Ieaas-~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~-----gD~~~~l~~~~~~~ 226 (317)
.++++||=.|+|. |.+++.+++ .|+.+|+++|.+++.+ +.++ .+|.+ .++. .|+.+.+....
T Consensus 194 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~-~~a~----~lGa~---~vi~~~~~~~~~~~~v~~~~--- 262 (376)
T 1e3i_A 194 TPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKF-PKAK----ALGAT---DCLNPRELDKPVQDVITELT--- 262 (376)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGH-HHHH----HTTCS---EEECGGGCSSCHHHHHHHHH---
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHH-HHHH----HhCCc---EEEccccccchHHHHHHHHh---
Confidence 4688999998642 333444343 6776899999999887 7765 35653 1232 12333333322
Q ss_pred CCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCC-eEEEEEe
Q 021116 227 GKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKD-SFIVVEY 269 (317)
Q Consensus 227 ~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpg-G~ivv~~ 269 (317)
.+.+|+||-.- +. ...++... +.|+++ |++++.-
T Consensus 263 --~~g~Dvvid~~----G~-~~~~~~~~--~~l~~~~G~iv~~G 297 (376)
T 1e3i_A 263 --AGGVDYSLDCA----GT-AQTLKAAV--DCTVLGWGSCTVVG 297 (376)
T ss_dssp --TSCBSEEEESS----CC-HHHHHHHH--HTBCTTTCEEEECC
T ss_pred --CCCccEEEECC----CC-HHHHHHHH--HHhhcCCCEEEEEC
Confidence 23799998642 11 22333332 278999 9987643
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=91.87 E-value=0.44 Score=44.63 Aligned_cols=96 Identities=17% Similarity=0.019 Sum_probs=56.6
Q ss_pred CCCCeEEEECCCc-chHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEE-----ecHHHHHHHHhhhc
Q 021116 154 LRPGRWLDLYSGT-GSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHT-----VRVETFLERAEQFV 226 (317)
Q Consensus 154 ~~~~rVLDlgcGt-G~l~Ieaas-~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~-----gD~~~~l~~~~~~~ 226 (317)
.++++||-.|+|. |.+++.+++ .|+.+|+++|.+++.+ +.++ .+|.+ .++. .|+.+.+....
T Consensus 189 ~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~-~~~~----~lGa~---~vi~~~~~~~~~~~~v~~~~--- 257 (373)
T 2fzw_A 189 EPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKF-ARAK----EFGAT---ECINPQDFSKPIQEVLIEMT--- 257 (373)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGH-HHHH----HHTCS---EEECGGGCSSCHHHHHHHHT---
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHH-HHHH----HcCCc---eEeccccccccHHHHHHHHh---
Confidence 4688999998642 333334333 5776899999999887 7775 35653 1232 12333333321
Q ss_pred CCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCC-eEEEEEe
Q 021116 227 GKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKD-SFIVVEY 269 (317)
Q Consensus 227 ~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpg-G~ivv~~ 269 (317)
.+.+|+||-.-. . ...++... +.|+++ |++++.-
T Consensus 258 --~~g~D~vid~~g----~-~~~~~~~~--~~l~~~~G~iv~~G 292 (373)
T 2fzw_A 258 --DGGVDYSFECIG----N-VKVMRAAL--EACHKGWGVSVVVG 292 (373)
T ss_dssp --TSCBSEEEECSC----C-HHHHHHHH--HTBCTTTCEEEECS
T ss_pred --CCCCCEEEECCC----c-HHHHHHHH--HhhccCCcEEEEEe
Confidence 237999986421 1 22333332 278999 9988654
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=91.84 E-value=0.54 Score=44.72 Aligned_cols=99 Identities=11% Similarity=-0.002 Sum_probs=57.8
Q ss_pred CCCCeEEEECCCcchHHHH---HH-HcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEE---ecHHHHHHHHhhhc
Q 021116 154 LRPGRWLDLYSGTGSVGIE---AI-SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHT---VRVETFLERAEQFV 226 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ie---aa-s~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~---gD~~~~l~~~~~~~ 226 (317)
.++++||=.|+ |.+|+. ++ ..|+.+|+++|.+++.+ +.++ .+|.+ .++. .|..+.+....
T Consensus 212 ~~g~~VlV~Ga--G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~-~~~~----~lGa~---~vi~~~~~~~~~~i~~~t--- 278 (404)
T 3ip1_A 212 RPGDNVVILGG--GPIGLAAVAILKHAGASKVILSEPSEVRR-NLAK----ELGAD---HVIDPTKENFVEAVLDYT--- 278 (404)
T ss_dssp CTTCEEEEECC--SHHHHHHHHHHHHTTCSEEEEECSCHHHH-HHHH----HHTCS---EEECTTTSCHHHHHHHHT---
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHHcCCCEEEEECCCHHHH-HHHH----HcCCC---EEEcCCCCCHHHHHHHHh---
Confidence 46889998886 455543 33 36877899999999988 7775 35643 2333 24433333332
Q ss_pred CCCCCccEEEECCCCCCc--cHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 227 GKDGPFDYMSVTPPYTAV--DYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 227 ~~~~~fDlV~~dPPy~~~--~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
....+|+||-.- +.. .+...++.+. +.++++|.+++.-.
T Consensus 279 -~g~g~D~vid~~--g~~~~~~~~~~~~l~--~~~~~~G~iv~~G~ 319 (404)
T 3ip1_A 279 -NGLGAKLFLEAT--GVPQLVWPQIEEVIW--RARGINATVAIVAR 319 (404)
T ss_dssp -TTCCCSEEEECS--SCHHHHHHHHHHHHH--HCSCCCCEEEECSC
T ss_pred -CCCCCCEEEECC--CCcHHHHHHHHHHHH--hccCCCcEEEEeCC
Confidence 133699998542 111 1223333321 13499999887543
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=91.83 E-value=0.38 Score=45.28 Aligned_cols=96 Identities=16% Similarity=0.061 Sum_probs=57.6
Q ss_pred CCCCeEEEECCCc-chHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEE-----ecHHHHHHHHhhhc
Q 021116 154 LRPGRWLDLYSGT-GSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHT-----VRVETFLERAEQFV 226 (317)
Q Consensus 154 ~~~~rVLDlgcGt-G~l~Ieaas-~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~-----gD~~~~l~~~~~~~ 226 (317)
.++++||=+|+|. |.+++.+++ .|+.+|+++|.+++.+ +.++ .+|.+. ++. .|+.+.+....
T Consensus 192 ~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~-~~a~----~lGa~~---vi~~~~~~~~~~~~i~~~~--- 260 (378)
T 3uko_A 192 EPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKY-ETAK----KFGVNE---FVNPKDHDKPIQEVIVDLT--- 260 (378)
T ss_dssp CTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHH-HHHH----TTTCCE---EECGGGCSSCHHHHHHHHT---
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHH-HHHH----HcCCcE---EEccccCchhHHHHHHHhc---
Confidence 4688999998742 444444443 5876899999999887 7765 456532 232 23334343332
Q ss_pred CCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCC-eEEEEEe
Q 021116 227 GKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKD-SFIVVEY 269 (317)
Q Consensus 227 ~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpg-G~ivv~~ 269 (317)
.+.+|+||-.- +. ...++... +.|+++ |++++.-
T Consensus 261 --~gg~D~vid~~----g~-~~~~~~~~--~~l~~g~G~iv~~G 295 (378)
T 3uko_A 261 --DGGVDYSFECI----GN-VSVMRAAL--ECCHKGWGTSVIVG 295 (378)
T ss_dssp --TSCBSEEEECS----CC-HHHHHHHH--HTBCTTTCEEEECS
T ss_pred --CCCCCEEEECC----CC-HHHHHHHH--HHhhccCCEEEEEc
Confidence 24799998642 11 22333332 278996 9888754
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=91.37 E-value=0.59 Score=43.24 Aligned_cols=98 Identities=13% Similarity=0.001 Sum_probs=58.1
Q ss_pred CCCCeEEEECCCc-chHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEe--cHHHHHHHHhhhcCCC
Q 021116 154 LRPGRWLDLYSGT-GSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTV--RVETFLERAEQFVGKD 229 (317)
Q Consensus 154 ~~~~rVLDlgcGt-G~l~Ieaas-~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~g--D~~~~l~~~~~~~~~~ 229 (317)
.++++||=.|+|. |.+++.+++ .|+.+|+++|.+++.+ +.++ .+|.+. ++.. |..+.+.... ..
T Consensus 170 ~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~-~~~~----~lGa~~---~i~~~~~~~~~v~~~t----~g 237 (345)
T 3jv7_A 170 GPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRL-ALAR----EVGADA---AVKSGAGAADAIRELT----GG 237 (345)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHH-HHHH----HTTCSE---EEECSTTHHHHHHHHH----GG
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHH-HHHH----HcCCCE---EEcCCCcHHHHHHHHh----CC
Confidence 4688999998743 444444444 4567899999999998 7775 356532 2322 3333332222 12
Q ss_pred CCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 230 GPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 230 ~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
..+|+||-.- +. ...++... +.|+++|++++.-.
T Consensus 238 ~g~d~v~d~~----G~-~~~~~~~~--~~l~~~G~iv~~G~ 271 (345)
T 3jv7_A 238 QGATAVFDFV----GA-QSTIDTAQ--QVVAVDGHISVVGI 271 (345)
T ss_dssp GCEEEEEESS----CC-HHHHHHHH--HHEEEEEEEEECSC
T ss_pred CCCeEEEECC----CC-HHHHHHHH--HHHhcCCEEEEECC
Confidence 3699988642 11 22333332 26899999887543
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.37 E-value=0.46 Score=44.10 Aligned_cols=96 Identities=13% Similarity=0.003 Sum_probs=58.6
Q ss_pred CCCCeEEEECC--CcchHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEE----ecHHHHHHHHhhhc
Q 021116 154 LRPGRWLDLYS--GTGSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHT----VRVETFLERAEQFV 226 (317)
Q Consensus 154 ~~~~rVLDlgc--GtG~l~Ieaas-~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~----gD~~~~l~~~~~~~ 226 (317)
.++++||-.|+ |.|...+.+++ .|+ +|+++|.+++.+ +.+++ +|.. .++. .|+.+.+....
T Consensus 168 ~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga-~V~~~~~~~~~~-~~~~~----~g~~---~~~d~~~~~~~~~~~~~~~--- 235 (347)
T 2hcy_A 168 MAGHWVAISGAAGGLGSLAVQYAKAMGY-RVLGIDGGEGKE-ELFRS----IGGE---VFIDFTKEKDIVGAVLKAT--- 235 (347)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECSTTHH-HHHHH----TTCC---EEEETTTCSCHHHHHHHHH---
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-cEEEEcCCHHHH-HHHHH----cCCc---eEEecCccHhHHHHHHHHh---
Confidence 46889999997 45555555444 676 799999998877 66653 4542 1222 23333333322
Q ss_pred CCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 227 GKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 227 ~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
.+.+|+||-.-. . ...++... +.|+++|+++..-.
T Consensus 236 --~~~~D~vi~~~g----~-~~~~~~~~--~~l~~~G~iv~~g~ 270 (347)
T 2hcy_A 236 --DGGAHGVINVSV----S-EAAIEAST--RYVRANGTTVLVGM 270 (347)
T ss_dssp --TSCEEEEEECSS----C-HHHHHHHT--TSEEEEEEEEECCC
T ss_pred --CCCCCEEEECCC----c-HHHHHHHH--HHHhcCCEEEEEeC
Confidence 126999987642 1 23344433 58899999886543
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=91.36 E-value=0.54 Score=43.22 Aligned_cols=94 Identities=16% Similarity=0.067 Sum_probs=56.8
Q ss_pred CCCCeEEEECC--CcchHHHHHH-HcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEE----ecHHHHHHHHhhhc
Q 021116 154 LRPGRWLDLYS--GTGSVGIEAI-SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHT----VRVETFLERAEQFV 226 (317)
Q Consensus 154 ~~~~rVLDlgc--GtG~l~Ieaa-s~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~----gD~~~~l~~~~~~~ 226 (317)
.++++||-.|| |.|...+.++ ..|+ +|+++|.+++.+ +.++ .+|.. . ++. .|+.+.+....
T Consensus 144 ~~g~~vlV~Ga~ggiG~~~~~~~~~~G~-~V~~~~~~~~~~-~~~~----~~g~~--~-~~d~~~~~~~~~~~~~~~--- 211 (333)
T 1v3u_A 144 KGGETVLVSAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKI-AYLK----QIGFD--A-AFNYKTVNSLEEALKKAS--- 211 (333)
T ss_dssp CSSCEEEEESTTBHHHHHHHHHHHHTTC-EEEEEESSHHHH-HHHH----HTTCS--E-EEETTSCSCHHHHHHHHC---
T ss_pred CCCCEEEEecCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHH-HHHH----hcCCc--E-EEecCCHHHHHHHHHHHh---
Confidence 46889999997 4455554444 3676 799999999887 7663 23542 1 222 23333333321
Q ss_pred CCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 227 GKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 227 ~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
.+.+|++|-+-. . ..++... +.|+++|++++.-
T Consensus 212 --~~~~d~vi~~~g----~--~~~~~~~--~~l~~~G~~v~~g 244 (333)
T 1v3u_A 212 --PDGYDCYFDNVG----G--EFLNTVL--SQMKDFGKIAICG 244 (333)
T ss_dssp --TTCEEEEEESSC----H--HHHHHHH--TTEEEEEEEEECC
T ss_pred --CCCCeEEEECCC----h--HHHHHHH--HHHhcCCEEEEEe
Confidence 247999987641 1 2233332 4799999988653
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=91.31 E-value=0.31 Score=45.11 Aligned_cols=96 Identities=8% Similarity=-0.147 Sum_probs=59.1
Q ss_pred CCCCeEEEECCC--cchHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEE---ecHHHHHHHHhhhcC
Q 021116 154 LRPGRWLDLYSG--TGSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHT---VRVETFLERAEQFVG 227 (317)
Q Consensus 154 ~~~~rVLDlgcG--tG~l~Ieaas-~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~---gD~~~~l~~~~~~~~ 227 (317)
.++++||-.||| .|..++.+++ .|+ +|+++|.+++.+ +.+++ +|.+ .++. .|..+.+....
T Consensus 143 ~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~-~~~~~----lga~---~~~~~~~~~~~~~~~~~~---- 209 (340)
T 3gms_A 143 QRNDVLLVNACGSAIGHLFAQLSQILNF-RLIAVTRNNKHT-EELLR----LGAA---YVIDTSTAPLYETVMELT---- 209 (340)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESSSTTH-HHHHH----HTCS---EEEETTTSCHHHHHHHHT----
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHcCC-EEEEEeCCHHHH-HHHHh----CCCc---EEEeCCcccHHHHHHHHh----
Confidence 468899999886 4556655544 677 799999999887 77764 4543 2233 23333333221
Q ss_pred CCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 228 ~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
....+|+||-.- + .....+.+ +.|+++|++++.-.
T Consensus 210 ~~~g~Dvvid~~----g-~~~~~~~~---~~l~~~G~iv~~G~ 244 (340)
T 3gms_A 210 NGIGADAAIDSI----G-GPDGNELA---FSLRPNGHFLTIGL 244 (340)
T ss_dssp TTSCEEEEEESS----C-HHHHHHHH---HTEEEEEEEEECCC
T ss_pred CCCCCcEEEECC----C-ChhHHHHH---HHhcCCCEEEEEee
Confidence 134699998753 1 12223333 27899999887543
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=91.21 E-value=0.62 Score=43.65 Aligned_cols=96 Identities=11% Similarity=0.005 Sum_probs=56.0
Q ss_pred CCCCeEEEECCCc-chHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEE-----ecHHHHHHHHhhhc
Q 021116 154 LRPGRWLDLYSGT-GSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHT-----VRVETFLERAEQFV 226 (317)
Q Consensus 154 ~~~~rVLDlgcGt-G~l~Ieaas-~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~-----gD~~~~l~~~~~~~ 226 (317)
.++++||-.|+|. |.+++.+++ +|+.+|+++|.+++.+ +.++ .+|.+ .++. .|+.+.+....
T Consensus 190 ~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~-~~~~----~lGa~---~vi~~~~~~~~~~~~~~~~~--- 258 (374)
T 2jhf_A 190 TQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKF-AKAK----EVGAT---ECVNPQDYKKPIQEVLTEMS--- 258 (374)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGH-HHHH----HTTCS---EEECGGGCSSCHHHHHHHHT---
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHH-HHHH----HhCCc---eEecccccchhHHHHHHHHh---
Confidence 4688999998643 333444343 6776899999999887 7765 35653 2232 12333333321
Q ss_pred CCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCC-eEEEEEe
Q 021116 227 GKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKD-SFIVVEY 269 (317)
Q Consensus 227 ~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpg-G~ivv~~ 269 (317)
.+.+|+||-.-. . ...++... +.|+++ |++++.-
T Consensus 259 --~~g~D~vid~~g----~-~~~~~~~~--~~l~~~~G~iv~~G 293 (374)
T 2jhf_A 259 --NGGVDFSFEVIG----R-LDTMVTAL--SCCQEAYGVSVIVG 293 (374)
T ss_dssp --TSCBSEEEECSC----C-HHHHHHHH--HHBCTTTCEEEECS
T ss_pred --CCCCcEEEECCC----C-HHHHHHHH--HHhhcCCcEEEEec
Confidence 237999986421 1 12233322 268999 9987643
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=90.99 E-value=0.5 Score=43.51 Aligned_cols=95 Identities=15% Similarity=0.047 Sum_probs=58.0
Q ss_pred CCCCeEEEECC--CcchHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEE---ecHHHHHHHHhhhcC
Q 021116 154 LRPGRWLDLYS--GTGSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHT---VRVETFLERAEQFVG 227 (317)
Q Consensus 154 ~~~~rVLDlgc--GtG~l~Ieaas-~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~---gD~~~~l~~~~~~~~ 227 (317)
.++++||-.|| |.|...+.+++ .|+ +|++++.+++.+ +.+.+ .+|.. .++. .|..+.+....
T Consensus 148 ~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~-~~~~~---~~g~~---~~~~~~~~~~~~~~~~~~---- 215 (336)
T 4b7c_A 148 KNGETVVISGAAGAVGSVAGQIARLKGC-RVVGIAGGAEKC-RFLVE---ELGFD---GAIDYKNEDLAAGLKREC---- 215 (336)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHH-HHHHH---TTCCS---EEEETTTSCHHHHHHHHC----
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHH---HcCCC---EEEECCCHHHHHHHHHhc----
Confidence 46889999887 44555555444 577 899999999887 76632 34542 2232 23333333221
Q ss_pred CCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 228 ~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
.+.+|+||-+- +. ..++... +.|+++|.+++.-
T Consensus 216 -~~~~d~vi~~~----g~--~~~~~~~--~~l~~~G~iv~~G 248 (336)
T 4b7c_A 216 -PKGIDVFFDNV----GG--EILDTVL--TRIAFKARIVLCG 248 (336)
T ss_dssp -TTCEEEEEESS----CH--HHHHHHH--TTEEEEEEEEECC
T ss_pred -CCCceEEEECC----Cc--chHHHHH--HHHhhCCEEEEEe
Confidence 34699988753 11 2344333 4899999988753
|
| >4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A* | Back alignment and structure |
|---|
Probab=90.83 E-value=1.7 Score=39.93 Aligned_cols=101 Identities=11% Similarity=-0.072 Sum_probs=59.9
Q ss_pred CCCCeEEEECCCcc-hHHHHHH-HcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCC
Q 021116 154 LRPGRWLDLYSGTG-SVGIEAI-SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGP 231 (317)
Q Consensus 154 ~~~~rVLDlgcGtG-~l~Ieaa-s~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~ 231 (317)
.++++||=.|+|.+ .+++..+ ..++.+|+++|.+++.+ +.++ .+|...-+..-..|..+.+.... ....
T Consensus 162 ~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~-~~~~----~~Ga~~~i~~~~~~~~~~v~~~t----~g~g 232 (348)
T 4eez_A 162 KPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKL-NLAK----KIGADVTINSGDVNPVDEIKKIT----GGLG 232 (348)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHH-HHHH----HTTCSEEEEC-CCCHHHHHHHHT----TSSC
T ss_pred CCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHh-hhhh----hcCCeEEEeCCCCCHHHHhhhhc----CCCC
Confidence 46889999988764 3333333 45677899999999987 7765 34543222222345444444332 2345
Q ss_pred ccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 232 FDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 232 fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
+|.++.+.. . ...+.... ..++++|.+++.-.
T Consensus 233 ~d~~~~~~~----~-~~~~~~~~--~~l~~~G~~v~~g~ 264 (348)
T 4eez_A 233 VQSAIVCAV----A-RIAFEQAV--ASLKPMGKMVAVAV 264 (348)
T ss_dssp EEEEEECCS----C-HHHHHHHH--HTEEEEEEEEECCC
T ss_pred ceEEEEecc----C-cchhheeh--eeecCCceEEEEec
Confidence 788887642 1 22333322 27899999887543
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=90.83 E-value=0.68 Score=43.67 Aligned_cols=100 Identities=14% Similarity=0.043 Sum_probs=56.1
Q ss_pred CCCCeEEEECCC-cchHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEec---HHHHHHHHhhhcCC
Q 021116 154 LRPGRWLDLYSG-TGSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVR---VETFLERAEQFVGK 228 (317)
Q Consensus 154 ~~~~rVLDlgcG-tG~l~Ieaas-~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD---~~~~l~~~~~~~~~ 228 (317)
.++++||-.||| .|.+++.+++ .|+.+|++++.+++.+ +.++ .+|.+ .++..+ -.++......+. .
T Consensus 194 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~-~~~~----~lGa~---~vi~~~~~~~~~~~~~v~~~~-~ 264 (380)
T 1vj0_A 194 FAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRL-KLAE----EIGAD---LTLNRRETSVEERRKAIMDIT-H 264 (380)
T ss_dssp CBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHH-HHHH----HTTCS---EEEETTTSCHHHHHHHHHHHT-T
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHH-HHHH----HcCCc---EEEeccccCcchHHHHHHHHh-C
Confidence 468899999853 2333344343 5756899999999987 7775 35653 234332 223322221111 1
Q ss_pred CCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 229 ~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
...+|+||-.-... ..+...++ .|+++|++++.-
T Consensus 265 g~g~Dvvid~~g~~-~~~~~~~~------~l~~~G~iv~~G 298 (380)
T 1vj0_A 265 GRGADFILEATGDS-RALLEGSE------LLRRGGFYSVAG 298 (380)
T ss_dssp TSCEEEEEECSSCT-THHHHHHH------HEEEEEEEEECC
T ss_pred CCCCcEEEECCCCH-HHHHHHHH------HHhcCCEEEEEe
Confidence 23699998653211 12222222 579999988654
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=90.77 E-value=0.76 Score=42.49 Aligned_cols=96 Identities=11% Similarity=-0.016 Sum_probs=58.0
Q ss_pred CCCCeEEEECC--CcchHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEe---cHHHHHHHHhhhcC
Q 021116 154 LRPGRWLDLYS--GTGSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTV---RVETFLERAEQFVG 227 (317)
Q Consensus 154 ~~~~rVLDlgc--GtG~l~Ieaas-~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~g---D~~~~l~~~~~~~~ 227 (317)
.++++||-.|+ |.|...+.+++ .|+ +|++++.+++.+ +.+++ +|.. .++.. |+.+.+....
T Consensus 165 ~~g~~vlV~Gasg~iG~~~~~~a~~~G~-~Vi~~~~~~~~~-~~~~~----~ga~---~~~d~~~~~~~~~~~~~~---- 231 (343)
T 2eih_A 165 RPGDDVLVMAAGSGVSVAAIQIAKLFGA-RVIATAGSEDKL-RRAKA----LGAD---ETVNYTHPDWPKEVRRLT---- 231 (343)
T ss_dssp CTTCEEEECSTTSTTHHHHHHHHHHTTC-EEEEEESSHHHH-HHHHH----HTCS---EEEETTSTTHHHHHHHHT----
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHh----cCCC---EEEcCCcccHHHHHHHHh----
Confidence 46889999997 55666666554 676 799999999987 77753 4542 12322 2222222221
Q ss_pred CCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 228 ~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
....+|+||-.-. ...+...++ .|+++|.++..-.
T Consensus 232 ~~~~~d~vi~~~g--~~~~~~~~~------~l~~~G~~v~~g~ 266 (343)
T 2eih_A 232 GGKGADKVVDHTG--ALYFEGVIK------ATANGGRIAIAGA 266 (343)
T ss_dssp TTTCEEEEEESSC--SSSHHHHHH------HEEEEEEEEESSC
T ss_pred CCCCceEEEECCC--HHHHHHHHH------hhccCCEEEEEec
Confidence 1246999997642 123333333 5789998876543
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=90.64 E-value=0.49 Score=43.92 Aligned_cols=97 Identities=13% Similarity=-0.011 Sum_probs=56.3
Q ss_pred CCCeEEEECCCc-chHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEE---ecHHHHHHHHhhhcCCC
Q 021116 155 RPGRWLDLYSGT-GSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHT---VRVETFLERAEQFVGKD 229 (317)
Q Consensus 155 ~~~rVLDlgcGt-G~l~Ieaas-~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~---gD~~~~l~~~~~~~~~~ 229 (317)
++++||-.|+|. |..++.+++ .|+.+|+++|.+++.+ +.+++ +|.+ .++. .|+.+.+.... ..
T Consensus 167 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~-~~~~~----~Ga~---~~~~~~~~~~~~~v~~~~----~g 234 (348)
T 2d8a_A 167 SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRR-ELAKK----VGAD---YVINPFEEDVVKEVMDIT----DG 234 (348)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHH-HHHHH----HTCS---EEECTTTSCHHHHHHHHT----TT
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHH-HHHHH----hCCC---EEECCCCcCHHHHHHHHc----CC
Confidence 688999999832 333344333 6775799999999887 77753 4542 1232 23333333221 12
Q ss_pred CCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 230 GPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 230 ~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
..+|+||-.-. . ...++... +.|+++|+++..-.
T Consensus 235 ~g~D~vid~~g----~-~~~~~~~~--~~l~~~G~iv~~g~ 268 (348)
T 2d8a_A 235 NGVDVFLEFSG----A-PKALEQGL--QAVTPAGRVSLLGL 268 (348)
T ss_dssp SCEEEEEECSC----C-HHHHHHHH--HHEEEEEEEEECCC
T ss_pred CCCCEEEECCC----C-HHHHHHHH--HHHhcCCEEEEEcc
Confidence 36999986532 1 12333322 26789999886543
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=90.40 E-value=0.85 Score=42.63 Aligned_cols=96 Identities=14% Similarity=-0.043 Sum_probs=57.3
Q ss_pred CCCCeEEEECCCc-chHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEe---cHHHHHHHHhhhcCC
Q 021116 154 LRPGRWLDLYSGT-GSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTV---RVETFLERAEQFVGK 228 (317)
Q Consensus 154 ~~~~rVLDlgcGt-G~l~Ieaas-~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~g---D~~~~l~~~~~~~~~ 228 (317)
.++++||=.|||. |.+++.+++ .|+ +|+++|.+++.+ +.++ .+|.+ .++.. |+.+.+.... .
T Consensus 188 ~~g~~VlV~G~G~vG~~a~qla~~~Ga-~Vi~~~~~~~~~-~~~~----~lGa~---~vi~~~~~~~~~~v~~~~----~ 254 (363)
T 3uog_A 188 RAGDRVVVQGTGGVALFGLQIAKATGA-EVIVTSSSREKL-DRAF----ALGAD---HGINRLEEDWVERVYALT----G 254 (363)
T ss_dssp CTTCEEEEESSBHHHHHHHHHHHHTTC-EEEEEESCHHHH-HHHH----HHTCS---EEEETTTSCHHHHHHHHH----T
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEecCchhH-HHHH----HcCCC---EEEcCCcccHHHHHHHHh----C
Confidence 4688999998543 334444443 576 799999999887 7764 35653 23332 3333333322 1
Q ss_pred CCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 229 ~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
+..+|+||-.-. ...+...++ .|+++|.+++.-.
T Consensus 255 g~g~D~vid~~g--~~~~~~~~~------~l~~~G~iv~~G~ 288 (363)
T 3uog_A 255 DRGADHILEIAG--GAGLGQSLK------AVAPDGRISVIGV 288 (363)
T ss_dssp TCCEEEEEEETT--SSCHHHHHH------HEEEEEEEEEECC
T ss_pred CCCceEEEECCC--hHHHHHHHH------HhhcCCEEEEEec
Confidence 346999986432 123333333 5799999887643
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=89.73 E-value=1.3 Score=41.15 Aligned_cols=98 Identities=13% Similarity=-0.023 Sum_probs=55.2
Q ss_pred CCCCeEEEECCCc-chHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEe----cHHHHHHHHhhhcC
Q 021116 154 LRPGRWLDLYSGT-GSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTV----RVETFLERAEQFVG 227 (317)
Q Consensus 154 ~~~~rVLDlgcGt-G~l~Ieaas-~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~g----D~~~~l~~~~~~~~ 227 (317)
.++++||-.|+|. |.+++.+++ .|+ +|+++|.+++.+ +.++ .+|.+ .++.. |..+.+.... ..
T Consensus 167 ~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~-~~~~----~lGa~---~~~~~~~~~~~~~~i~~~~--~~ 235 (352)
T 1e3j_A 167 QLGTTVLVIGAGPIGLVSVLAAKAYGA-FVVCTARSPRRL-EVAK----NCGAD---VTLVVDPAKEEESSIIERI--RS 235 (352)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHH-HHHH----HTTCS---EEEECCTTTSCHHHHHHHH--HH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEcCCHHHH-HHHH----HhCCC---EEEcCcccccHHHHHHHHh--cc
Confidence 4688999998743 444444443 576 499999999987 7775 35653 22321 2222222111 00
Q ss_pred -CCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 228 -KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 228 -~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
....+|+||-... . ...++... +.|+++|.+++.-
T Consensus 236 ~~g~g~D~vid~~g----~-~~~~~~~~--~~l~~~G~iv~~G 271 (352)
T 1e3j_A 236 AIGDLPNVTIDCSG----N-EKCITIGI--NITRTGGTLMLVG 271 (352)
T ss_dssp HSSSCCSEEEECSC----C-HHHHHHHH--HHSCTTCEEEECS
T ss_pred ccCCCCCEEEECCC----C-HHHHHHHH--HHHhcCCEEEEEe
Confidence 0246999986532 1 22233322 2689999988753
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=89.33 E-value=1.6 Score=40.31 Aligned_cols=95 Identities=7% Similarity=-0.022 Sum_probs=55.8
Q ss_pred CCCeEEEECCCc-chHHHHHHH-c--CCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecH-HHHHHHHhhhcCCC
Q 021116 155 RPGRWLDLYSGT-GSVGIEAIS-R--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRV-ETFLERAEQFVGKD 229 (317)
Q Consensus 155 ~~~rVLDlgcGt-G~l~Ieaas-~--Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~-~~~l~~~~~~~~~~ 229 (317)
++++||-.|+|. |.+++.+++ . |+ +|+++|.+++.+ +.+++ +|.+ .++..+- .++..... ..
T Consensus 170 ~g~~VlV~GaG~vG~~aiqlak~~~~Ga-~Vi~~~~~~~~~-~~~~~----lGa~---~vi~~~~~~~~~~~~~----~g 236 (344)
T 2h6e_A 170 AEPVVIVNGIGGLAVYTIQILKALMKNI-TIVGISRSKKHR-DFALE----LGAD---YVSEMKDAESLINKLT----DG 236 (344)
T ss_dssp SSCEEEEECCSHHHHHHHHHHHHHCTTC-EEEEECSCHHHH-HHHHH----HTCS---EEECHHHHHHHHHHHH----TT
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCC-EEEEEeCCHHHH-HHHHH----hCCC---EEeccccchHHHHHhh----cC
Confidence 688999999842 344444443 5 76 699999999987 77753 5643 2332221 23333332 12
Q ss_pred CCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 230 GPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 230 ~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
..+|+||-.-. . ...++... +.|+++|.+++.-
T Consensus 237 ~g~D~vid~~g----~-~~~~~~~~--~~l~~~G~iv~~g 269 (344)
T 2h6e_A 237 LGASIAIDLVG----T-EETTYNLG--KLLAQEGAIILVG 269 (344)
T ss_dssp CCEEEEEESSC----C-HHHHHHHH--HHEEEEEEEEECC
T ss_pred CCccEEEECCC----C-hHHHHHHH--HHhhcCCEEEEeC
Confidence 36999986531 1 22333322 2689999988654
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=89.15 E-value=1 Score=41.65 Aligned_cols=94 Identities=13% Similarity=0.046 Sum_probs=55.5
Q ss_pred CCCCeEEEECCC-cchHHHHHH-HcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEE---ecHHHHHHHHhhhcCC
Q 021116 154 LRPGRWLDLYSG-TGSVGIEAI-SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHT---VRVETFLERAEQFVGK 228 (317)
Q Consensus 154 ~~~~rVLDlgcG-tG~l~Ieaa-s~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~---gD~~~~l~~~~~~~~~ 228 (317)
.++++||-.|+| .|..++.++ ..|+ +|+++|.+++.+ +.+++ +|.. .++. .|..+.+....
T Consensus 163 ~~g~~VlV~GaG~vG~~~~~~a~~~Ga-~Vi~~~~~~~~~-~~~~~----lGa~---~~~d~~~~~~~~~~~~~~----- 228 (339)
T 1rjw_A 163 KPGEWVAIYGIGGLGHVAVQYAKAMGL-NVVAVDIGDEKL-ELAKE----LGAD---LVVNPLKEDAAKFMKEKV----- 228 (339)
T ss_dssp CTTCEEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHH-HHHHH----TTCS---EEECTTTSCHHHHHHHHH-----
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEeCCHHHH-HHHHH----CCCC---EEecCCCccHHHHHHHHh-----
Confidence 468899999984 244444444 3676 899999999987 77753 5542 1222 23322222221
Q ss_pred CCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 229 ~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
+.+|+||-.-. . ...++... +.|+++|+++..-
T Consensus 229 -~~~d~vid~~g----~-~~~~~~~~--~~l~~~G~~v~~g 261 (339)
T 1rjw_A 229 -GGVHAAVVTAV----S-KPAFQSAY--NSIRRGGACVLVG 261 (339)
T ss_dssp -SSEEEEEESSC----C-HHHHHHHH--HHEEEEEEEEECC
T ss_pred -CCCCEEEECCC----C-HHHHHHHH--HHhhcCCEEEEec
Confidence 46999987532 1 12333322 2689999988654
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=88.96 E-value=0.74 Score=42.41 Aligned_cols=94 Identities=14% Similarity=0.032 Sum_probs=57.3
Q ss_pred CCCCeEEEECC--CcchHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEE----ecHHHHHHHHhhhc
Q 021116 154 LRPGRWLDLYS--GTGSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHT----VRVETFLERAEQFV 226 (317)
Q Consensus 154 ~~~~rVLDlgc--GtG~l~Ieaas-~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~----gD~~~~l~~~~~~~ 226 (317)
.++++||-.|| |.|...+.+++ .|+ +|++++.+++.+ +.+++. +|.. . ++. .|+.+.+....
T Consensus 154 ~~g~~vlI~Ga~g~iG~~~~~~a~~~G~-~V~~~~~~~~~~-~~~~~~---~g~~--~-~~d~~~~~~~~~~~~~~~--- 222 (345)
T 2j3h_A 154 KEGETVYVSAASGAVGQLVGQLAKMMGC-YVVGSAGSKEKV-DLLKTK---FGFD--D-AFNYKEESDLTAALKRCF--- 222 (345)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHH-HHHHHT---SCCS--E-EEETTSCSCSHHHHHHHC---
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHHH---cCCc--e-EEecCCHHHHHHHHHHHh---
Confidence 46889999986 45555555444 676 799999999887 777532 3542 1 222 13333333321
Q ss_pred CCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEE
Q 021116 227 GKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVE 268 (317)
Q Consensus 227 ~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~ 268 (317)
...+|+||-+- +. ..++... +.|+++|.+++.
T Consensus 223 --~~~~d~vi~~~----g~--~~~~~~~--~~l~~~G~~v~~ 254 (345)
T 2j3h_A 223 --PNGIDIYFENV----GG--KMLDAVL--VNMNMHGRIAVC 254 (345)
T ss_dssp --TTCEEEEEESS----CH--HHHHHHH--TTEEEEEEEEEC
T ss_pred --CCCCcEEEECC----CH--HHHHHHH--HHHhcCCEEEEE
Confidence 24699998763 11 2344333 478999998864
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=88.90 E-value=0.85 Score=46.36 Aligned_cols=167 Identities=8% Similarity=-0.098 Sum_probs=92.0
Q ss_pred eEEecCCCCCCCCChHHHHHHHHHHHhhcCC---C-CCCCCCCeEEEECCCcchHHHHHHHc-----------CC--CEE
Q 021116 119 KKLLSPKGMDVRPMMEVVKGAAFDILQSAGG---C-PASLRPGRWLDLYSGTGSVGIEAISR-----------GC--SEV 181 (317)
Q Consensus 119 ~~l~~p~~~~~rpt~~~v~~alf~~L~~~~~---~-~~~~~~~rVLDlgcGtG~l~Ieaas~-----------Ga--~~V 181 (317)
..+....+..++....-+.|+..-.+..... . ....+.-+|+|+|-|||...+.++.. .. -++
T Consensus 26 ~~~s~~~~~~y~s~~~~~~e~~~vf~~~~~l~~~~~~~~~~~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~ 105 (676)
T 3ps9_A 26 TPVSRDFDDVYFSNDNGLEETRYVFLGGNQLEVRFPEHPHPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHF 105 (676)
T ss_dssp CCEETTTTEESSCTTTHHHHHHHHTTGGGTHHHHGGGCSSSEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEE
T ss_pred CccCccCCCcccCCcCHHHhhHhhhhccCChhHHHHhCCCCceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEE
Confidence 3333344444555555556665433332100 0 00123358999999999888765432 11 268
Q ss_pred EEEeC---CHHHHHHHHHH-----------hHHHh-----CC-----C---CceEEEEecHHHHHHHHhhhcCCCCCccE
Q 021116 182 HFVEM---DPWVVSNVLIP-----------NLEWT-----GF-----L---DVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (317)
Q Consensus 182 ~aVDi---n~~al~~~ar~-----------N~~~~-----gl-----~---~~v~ii~gD~~~~l~~~~~~~~~~~~fDl 234 (317)
+.+|. +++.+ +.+-. -++.. |+ + -.++++.+|+.+.+..+.. .....||+
T Consensus 106 ~s~E~~p~~~~~l-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~l~~gd~~~~l~~~~~--~~~~~~d~ 182 (676)
T 3ps9_A 106 ISFEKFPLTRADL-ALAHQHWPELAPWAEQLQAQWPMPLPGCHRLLLDAGRVTLDLWFGDINELTSQLDD--SLNQKVDA 182 (676)
T ss_dssp EEEESSCCCHHHH-HHHHTTCGGGHHHHHHHHHHCCCCCSEEEEEEEGGGTEEEEEEESCHHHHGGGBCG--GGTTCEEE
T ss_pred EEEeCCCCCHHHH-HHHHHhChhhHHHHHHHHHhCcccCCCceEEEecCCcEEEEEecCCHHHHHHhccc--ccCCcccE
Confidence 99999 77666 42221 11111 10 1 1356788999888754310 01357999
Q ss_pred EEECCCCCCc----c-HHHHHHHHHHcCCcCCCeEEEEEeCCCCCcc--ccCCCeEEEEEeecCc
Q 021116 235 MSVTPPYTAV----D-YEVLMAQISKSALVGKDSFIVVEYPLRTDML--DTCGCLVKIKDRRFGR 292 (317)
Q Consensus 235 V~~dPPy~~~----~-~~~~l~~L~~~~lLkpgG~ivv~~~~~~~l~--~~~~~~~~~~~r~yG~ 292 (317)
||+|+ |... . -.+++..+. +++++||.+...+.. ..+. ....||.+.+-+.+|.
T Consensus 183 ~~~D~-f~p~~np~~w~~~~~~~l~--~~~~~g~~~~t~~~~-~~vr~~L~~aGf~v~~~~~~g~ 243 (676)
T 3ps9_A 183 WFLDG-FAPAKNPDMWTQNLFNAMA--RLARPGGTLATFTSA-GFVRRGLQDAGFTMQKRKGFGR 243 (676)
T ss_dssp EEECC-SCGGGCGGGSCHHHHHHHH--HHEEEEEEEEESCCC-HHHHHHHHHHTCEEEEEECSTT
T ss_pred EEECC-CCCcCChhhhhHHHHHHHH--HHhCCCCEEEeccCc-HHHHHHHHhCCeEEEecccccc
Confidence 99997 4321 1 256677775 378999988765432 2211 1246787766666764
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=88.81 E-value=3 Score=37.53 Aligned_cols=82 Identities=13% Similarity=0.020 Sum_probs=54.6
Q ss_pred CCCCeEEEECCCcch---HHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHH---HhhhcC
Q 021116 154 LRPGRWLDLYSGTGS---VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER---AEQFVG 227 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~---l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~---~~~~~~ 227 (317)
++++.+|=-|++.|. ++..+++.|+ +|+.+|.+++.+ +.+.+.++..|. ++.++.+|+.+...- ..+...
T Consensus 5 L~gKvalVTGas~GIG~aiA~~la~~Ga-~Vv~~~~~~~~~-~~~~~~i~~~g~--~~~~~~~Dvt~~~~v~~~~~~~~~ 80 (254)
T 4fn4_A 5 LKNKVVIVTGAGSGIGRAIAKKFALNDS-IVVAVELLEDRL-NQIVQELRGMGK--EVLGVKADVSKKKDVEEFVRRTFE 80 (254)
T ss_dssp GTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHHHHTTC--CEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHH-HHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHHHH
Confidence 578889988877763 2333456776 699999999998 777777777664 478889887543210 000001
Q ss_pred CCCCccEEEECC
Q 021116 228 KDGPFDYMSVTP 239 (317)
Q Consensus 228 ~~~~fDlV~~dP 239 (317)
.-+..|+++.|.
T Consensus 81 ~~G~iDiLVNNA 92 (254)
T 4fn4_A 81 TYSRIDVLCNNA 92 (254)
T ss_dssp HHSCCCEEEECC
T ss_pred HcCCCCEEEECC
Confidence 126789999764
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=88.46 E-value=1.7 Score=39.83 Aligned_cols=95 Identities=7% Similarity=-0.109 Sum_probs=55.4
Q ss_pred CCCCeEEEECC--CcchHHHHHH-HcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEE---ecHHHHHHHHhhhcC
Q 021116 154 LRPGRWLDLYS--GTGSVGIEAI-SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHT---VRVETFLERAEQFVG 227 (317)
Q Consensus 154 ~~~~rVLDlgc--GtG~l~Ieaa-s~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~---gD~~~~l~~~~~~~~ 227 (317)
.++++||-.|+ |.|...+.++ ..|+ +|+++|.+++.+ +.+++ +|.. .++. .|..+.+....
T Consensus 144 ~~g~~vlV~Ga~ggiG~~~~~~a~~~G~-~Vi~~~~~~~~~-~~~~~----~g~~---~~~d~~~~~~~~~i~~~~---- 210 (333)
T 1wly_A 144 KPGDYVLIHAAAGGMGHIMVPWARHLGA-TVIGTVSTEEKA-ETARK----LGCH---HTINYSTQDFAEVVREIT---- 210 (333)
T ss_dssp CTTCEEEETTTTSTTHHHHHHHHHHTTC-EEEEEESSHHHH-HHHHH----HTCS---EEEETTTSCHHHHHHHHH----
T ss_pred CCCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHH----cCCC---EEEECCCHHHHHHHHHHh----
Confidence 46789998885 4555555544 4676 799999999887 77754 3542 1222 12222222221
Q ss_pred CCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 228 ~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
....+|+||-+-.- .. ++... +.|+++|.+++.-
T Consensus 211 ~~~~~d~vi~~~g~--~~----~~~~~--~~l~~~G~iv~~g 244 (333)
T 1wly_A 211 GGKGVDVVYDSIGK--DT----LQKSL--DCLRPRGMCAAYG 244 (333)
T ss_dssp TTCCEEEEEECSCT--TT----HHHHH--HTEEEEEEEEECC
T ss_pred CCCCCeEEEECCcH--HH----HHHHH--HhhccCCEEEEEe
Confidence 12469999976421 12 22222 2689999987654
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=88.46 E-value=0.72 Score=42.72 Aligned_cols=96 Identities=13% Similarity=0.054 Sum_probs=56.3
Q ss_pred CCCCeEEEECCC--cchHHHHHH-Hc-CCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEe---cHHHHHHHHhhhc
Q 021116 154 LRPGRWLDLYSG--TGSVGIEAI-SR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTV---RVETFLERAEQFV 226 (317)
Q Consensus 154 ~~~~rVLDlgcG--tG~l~Ieaa-s~-Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~g---D~~~~l~~~~~~~ 226 (317)
.++++||-.|+| .|...+.++ .. |+ +|+++|.+++.+ +.+++ +|.. .++.. |..+.+....
T Consensus 169 ~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga-~Vi~~~~~~~~~-~~~~~----~g~~---~~~~~~~~~~~~~~~~~~--- 236 (347)
T 1jvb_A 169 DPTKTLLVVGAGGGLGTMAVQIAKAVSGA-TIIGVDVREEAV-EAAKR----AGAD---YVINASMQDPLAEIRRIT--- 236 (347)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHHTCC-EEEEEESSHHHH-HHHHH----HTCS---EEEETTTSCHHHHHHHHT---
T ss_pred CCCCEEEEECCCccHHHHHHHHHHHcCCC-eEEEEcCCHHHH-HHHHH----hCCC---EEecCCCccHHHHHHHHh---
Confidence 468899999987 344444444 35 76 799999999887 77743 4542 12221 2222222221
Q ss_pred CCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 227 GKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 227 ~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
..+.+|+||-.-. . ...++... +.|+++|.+++.-
T Consensus 237 -~~~~~d~vi~~~g----~-~~~~~~~~--~~l~~~G~iv~~g 271 (347)
T 1jvb_A 237 -ESKGVDAVIDLNN----S-EKTLSVYP--KALAKQGKYVMVG 271 (347)
T ss_dssp -TTSCEEEEEESCC----C-HHHHTTGG--GGEEEEEEEEECC
T ss_pred -cCCCceEEEECCC----C-HHHHHHHH--HHHhcCCEEEEEC
Confidence 1147999987631 1 22333322 4789999988753
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=88.32 E-value=1.2 Score=41.65 Aligned_cols=96 Identities=13% Similarity=0.089 Sum_probs=55.8
Q ss_pred CCCeEEEEC-C-CcchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCC
Q 021116 155 RPGRWLDLY-S-GTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGP 231 (317)
Q Consensus 155 ~~~rVLDlg-c-GtG~l~Ieaas~-Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~ 231 (317)
++++||=.| + |.|.+++.+++. ++.+|+++|.+++.+ +.+++ +|.+ .++..+ .++......+ ..+.
T Consensus 171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~-~~~~~----lGad---~vi~~~-~~~~~~v~~~--~~~g 239 (363)
T 4dvj_A 171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQ-EWVKS----LGAH---HVIDHS-KPLAAEVAAL--GLGA 239 (363)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHH-HHHHH----TTCS---EEECTT-SCHHHHHHTT--CSCC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHH-HHHHH----cCCC---EEEeCC-CCHHHHHHHh--cCCC
Confidence 577888886 3 335555666664 556899999999987 77754 5653 223211 1122222211 2357
Q ss_pred ccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEE
Q 021116 232 FDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVE 268 (317)
Q Consensus 232 fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~ 268 (317)
+|+||-.- + ....++... +.|+++|.+++.
T Consensus 240 ~Dvvid~~----g-~~~~~~~~~--~~l~~~G~iv~~ 269 (363)
T 4dvj_A 240 PAFVFSTT----H-TDKHAAEIA--DLIAPQGRFCLI 269 (363)
T ss_dssp EEEEEECS----C-HHHHHHHHH--HHSCTTCEEEEC
T ss_pred ceEEEECC----C-chhhHHHHH--HHhcCCCEEEEE
Confidence 99887642 1 122333332 268999999875
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=88.15 E-value=1.2 Score=41.15 Aligned_cols=95 Identities=13% Similarity=0.054 Sum_probs=55.7
Q ss_pred CCCCeEEEECC--CcchHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEec--HHHHHHHHhhhcCC
Q 021116 154 LRPGRWLDLYS--GTGSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVR--VETFLERAEQFVGK 228 (317)
Q Consensus 154 ~~~~rVLDlgc--GtG~l~Ieaas-~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD--~~~~l~~~~~~~~~ 228 (317)
.++++||=.|+ |.|.+++.+++ .|+ +|++++.+++.+ +.+++ +|.+ .++..+ ..+.+.... .
T Consensus 158 ~~g~~VlV~Gasg~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~-~~~~~----~ga~---~v~~~~~~~~~~v~~~~----~ 224 (342)
T 4eye_A 158 RAGETVLVLGAAGGIGTAAIQIAKGMGA-KVIAVVNRTAAT-EFVKS----VGAD---IVLPLEEGWAKAVREAT----G 224 (342)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSGGGH-HHHHH----HTCS---EEEESSTTHHHHHHHHT----T
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHH-HHHHh----cCCc---EEecCchhHHHHHHHHh----C
Confidence 46889998876 34555555444 576 899999999887 77764 4543 233333 333332221 1
Q ss_pred CCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 229 ~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
...+|+||-.-. ... ++... +.|+++|.+++.-
T Consensus 225 ~~g~Dvvid~~g--~~~----~~~~~--~~l~~~G~iv~~G 257 (342)
T 4eye_A 225 GAGVDMVVDPIG--GPA----FDDAV--RTLASEGRLLVVG 257 (342)
T ss_dssp TSCEEEEEESCC----C----HHHHH--HTEEEEEEEEEC-
T ss_pred CCCceEEEECCc--hhH----HHHHH--HhhcCCCEEEEEE
Confidence 236999986532 112 22222 2689999988653
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=88.06 E-value=1 Score=41.35 Aligned_cols=96 Identities=10% Similarity=0.015 Sum_probs=56.2
Q ss_pred CCCCeEEEECC--CcchHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEE---ecHHHHHHHHhhhcC
Q 021116 154 LRPGRWLDLYS--GTGSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHT---VRVETFLERAEQFVG 227 (317)
Q Consensus 154 ~~~~rVLDlgc--GtG~l~Ieaas-~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~---gD~~~~l~~~~~~~~ 227 (317)
.++++||=.|+ |.|..++.+++ .|+ +|++++.+++.+ +.+++ +|.. .++. .|..+.+....
T Consensus 147 ~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~-~~~~~----~ga~---~~~~~~~~~~~~~~~~~~---- 213 (334)
T 3qwb_A 147 KKGDYVLLFAAAGGVGLILNQLLKMKGA-HTIAVASTDEKL-KIAKE----YGAE---YLINASKEDILRQVLKFT---- 213 (334)
T ss_dssp CTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSHHHH-HHHHH----TTCS---EEEETTTSCHHHHHHHHT----
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHH----cCCc---EEEeCCCchHHHHHHHHh----
Confidence 46889998874 33444444443 576 799999999987 77654 4542 2333 23333333221
Q ss_pred CCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 228 ~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
....+|+||-.-. ...+...++ .|+++|.++..-.
T Consensus 214 ~~~g~D~vid~~g--~~~~~~~~~------~l~~~G~iv~~G~ 248 (334)
T 3qwb_A 214 NGKGVDASFDSVG--KDTFEISLA------ALKRKGVFVSFGN 248 (334)
T ss_dssp TTSCEEEEEECCG--GGGHHHHHH------HEEEEEEEEECCC
T ss_pred CCCCceEEEECCC--hHHHHHHHH------HhccCCEEEEEcC
Confidence 1346999987532 112222222 5899999887543
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=87.76 E-value=1.1 Score=40.90 Aligned_cols=96 Identities=7% Similarity=-0.038 Sum_probs=55.0
Q ss_pred CCCCeEEEECC--CcchHHHHHH-HcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEE---ecHHHHHHHHhhhcC
Q 021116 154 LRPGRWLDLYS--GTGSVGIEAI-SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHT---VRVETFLERAEQFVG 227 (317)
Q Consensus 154 ~~~~rVLDlgc--GtG~l~Ieaa-s~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~---gD~~~~l~~~~~~~~ 227 (317)
.++++||-.|+ |.|...+.++ ..|+ +|+++|.+++.+ +.+++ +|.. .++. .|..+.+....
T Consensus 139 ~~g~~vlV~Ga~ggiG~~~~~~a~~~G~-~V~~~~~~~~~~-~~~~~----~g~~---~~~~~~~~~~~~~~~~~~---- 205 (327)
T 1qor_A 139 KPDEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGTAQKA-QSALK----AGAW---QVINYREEDLVERLKEIT---- 205 (327)
T ss_dssp CTTCEEEESSTTBHHHHHHHHHHHHHTC-EEEEEESSHHHH-HHHHH----HTCS---EEEETTTSCHHHHHHHHT----
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHH-HHHHH----cCCC---EEEECCCccHHHHHHHHh----
Confidence 46789998873 3444444433 3676 799999999887 77754 3542 1222 12222222221
Q ss_pred CCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 228 ~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
....+|+||-+-. . ..++... +.|+++|.+++.-.
T Consensus 206 ~~~~~D~vi~~~g--~----~~~~~~~--~~l~~~G~iv~~g~ 240 (327)
T 1qor_A 206 GGKKVRVVYDSVG--R----DTWERSL--DCLQRRGLMVSFGN 240 (327)
T ss_dssp TTCCEEEEEECSC--G----GGHHHHH--HTEEEEEEEEECCC
T ss_pred CCCCceEEEECCc--h----HHHHHHH--HHhcCCCEEEEEec
Confidence 1246999997642 1 1233322 26899999886543
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=87.74 E-value=1.8 Score=40.59 Aligned_cols=94 Identities=14% Similarity=0.069 Sum_probs=55.9
Q ss_pred CCCCeEEEECCCc-chHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCC
Q 021116 154 LRPGRWLDLYSGT-GSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGP 231 (317)
Q Consensus 154 ~~~~rVLDlgcGt-G~l~Ieaas-~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~ 231 (317)
.++++||-.|+|. |.+++.+++ .|+ +|+++|.+++.+ +.+++ +|.+ .++..+-.++.... ...
T Consensus 193 ~~g~~VlV~GaG~vG~~aiqlak~~Ga-~Vi~~~~~~~~~-~~a~~----lGa~---~vi~~~~~~~~~~~------~~g 257 (369)
T 1uuf_A 193 GPGKKVGVVGIGGLGHMGIKLAHAMGA-HVVAFTTSEAKR-EAAKA----LGAD---EVVNSRNADEMAAH------LKS 257 (369)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSGGGH-HHHHH----HTCS---EEEETTCHHHHHTT------TTC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHH----cCCc---EEeccccHHHHHHh------hcC
Confidence 4688999998753 444444444 576 599999999887 77753 5653 23332222333222 146
Q ss_pred ccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 232 FDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 232 fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
+|+||-.-.- ...+...+ +.|+++|.++..-
T Consensus 258 ~Dvvid~~g~-~~~~~~~~------~~l~~~G~iv~~G 288 (369)
T 1uuf_A 258 FDFILNTVAA-PHNLDDFT------TLLKRDGTMTLVG 288 (369)
T ss_dssp EEEEEECCSS-CCCHHHHH------TTEEEEEEEEECC
T ss_pred CCEEEECCCC-HHHHHHHH------HHhccCCEEEEec
Confidence 9999864321 11222222 3789999988643
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=87.48 E-value=2.1 Score=39.96 Aligned_cols=94 Identities=14% Similarity=0.037 Sum_probs=56.4
Q ss_pred CCCCeEEEEC--CCcchHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEE---ecHHHHHHHHhhhcC
Q 021116 154 LRPGRWLDLY--SGTGSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHT---VRVETFLERAEQFVG 227 (317)
Q Consensus 154 ~~~~rVLDlg--cGtG~l~Ieaas-~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~---gD~~~~l~~~~~~~~ 227 (317)
.++++||-.| .|.|..++.+++ .|+ +|++++.+++.+ +.+++ +|.+ .++. .|+.+.+...
T Consensus 162 ~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~-~~~~~----~Ga~---~~~~~~~~~~~~~~~~~----- 227 (362)
T 2c0c_A 162 SEGKKVLVTAAAGGTGQFAMQLSKKAKC-HVIGTCSSDEKS-AFLKS----LGCD---RPINYKTEPVGTVLKQE----- 227 (362)
T ss_dssp CTTCEEEETTTTBTTHHHHHHHHHHTTC-EEEEEESSHHHH-HHHHH----TTCS---EEEETTTSCHHHHHHHH-----
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHhCCC-EEEEEECCHHHH-HHHHH----cCCc---EEEecCChhHHHHHHHh-----
Confidence 4688999988 345555555444 576 799999999887 77754 5643 2232 2333333222
Q ss_pred CCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 228 ~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
....+|+||-.-. . ..++... +.|+++|.+++.-
T Consensus 228 ~~~g~D~vid~~g----~--~~~~~~~--~~l~~~G~iv~~g 261 (362)
T 2c0c_A 228 YPEGVDVVYESVG----G--AMFDLAV--DALATKGRLIVIG 261 (362)
T ss_dssp CTTCEEEEEECSC----T--HHHHHHH--HHEEEEEEEEECC
T ss_pred cCCCCCEEEECCC----H--HHHHHHH--HHHhcCCEEEEEe
Confidence 1246999987532 1 2333332 2688999887654
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=87.44 E-value=1.1 Score=41.07 Aligned_cols=97 Identities=10% Similarity=-0.105 Sum_probs=56.9
Q ss_pred CCCCeEEEECC--CcchHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEE---ecHHHHHHHHhhhcC
Q 021116 154 LRPGRWLDLYS--GTGSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHT---VRVETFLERAEQFVG 227 (317)
Q Consensus 154 ~~~~rVLDlgc--GtG~l~Ieaas-~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~---gD~~~~l~~~~~~~~ 227 (317)
.++++||=.|+ |.|..++.+++ .|+ +|++++.+++.+ +.+++ +|.. .++. .|..+.+....
T Consensus 139 ~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~-~~~~~----~Ga~---~~~~~~~~~~~~~~~~~~---- 205 (325)
T 3jyn_A 139 KPGEIILFHAAAGGVGSLACQWAKALGA-KLIGTVSSPEKA-AHAKA----LGAW---ETIDYSHEDVAKRVLELT---- 205 (325)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESSHHHH-HHHHH----HTCS---EEEETTTSCHHHHHHHHT----
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHH----cCCC---EEEeCCCccHHHHHHHHh----
Confidence 46889988762 33444444443 577 799999999987 77763 4542 2233 23333332221
Q ss_pred CCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCC
Q 021116 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPL 271 (317)
Q Consensus 228 ~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~ 271 (317)
....+|+||-.-. . ..++... +.|+++|++++.-..
T Consensus 206 ~~~g~Dvvid~~g----~--~~~~~~~--~~l~~~G~iv~~g~~ 241 (325)
T 3jyn_A 206 DGKKCPVVYDGVG----Q--DTWLTSL--DSVAPRGLVVSFGNA 241 (325)
T ss_dssp TTCCEEEEEESSC----G--GGHHHHH--TTEEEEEEEEECCCT
T ss_pred CCCCceEEEECCC----h--HHHHHHH--HHhcCCCEEEEEecC
Confidence 2346999886531 1 1233222 478999999876543
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=87.33 E-value=2 Score=40.02 Aligned_cols=95 Identities=8% Similarity=0.000 Sum_probs=54.8
Q ss_pred CCCCeEEEECC--CcchHHHHHH-HcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEe---cHHHHHHHHhhhcC
Q 021116 154 LRPGRWLDLYS--GTGSVGIEAI-SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTV---RVETFLERAEQFVG 227 (317)
Q Consensus 154 ~~~~rVLDlgc--GtG~l~Ieaa-s~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~g---D~~~~l~~~~~~~~ 227 (317)
.++++||-.|+ |.|...+.++ ..|+ +|++++.+++.+ +.++ .+|.. .++.. |..+.+....
T Consensus 169 ~~g~~vlV~GasggiG~~~~~~a~~~Ga-~Vi~~~~~~~~~-~~~~----~~ga~---~~~d~~~~~~~~~~~~~~---- 235 (351)
T 1yb5_A 169 KAGESVLVHGASGGVGLAACQIARAYGL-KILGTAGTEEGQ-KIVL----QNGAH---EVFNHREVNYIDKIKKYV---- 235 (351)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHH-HHHH----HTTCS---EEEETTSTTHHHHHHHHH----
T ss_pred CCcCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCChhHH-HHHH----HcCCC---EEEeCCCchHHHHHHHHc----
Confidence 46889999986 3444444444 3676 799999999887 7654 34542 12222 2222222221
Q ss_pred CCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 228 ~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
....+|+||-+. +. . .+.... +.|+++|.+++.-
T Consensus 236 ~~~~~D~vi~~~----G~-~-~~~~~~--~~l~~~G~iv~~g 269 (351)
T 1yb5_A 236 GEKGIDIIIEML----AN-V-NLSKDL--SLLSHGGRVIVVG 269 (351)
T ss_dssp CTTCEEEEEESC----HH-H-HHHHHH--HHEEEEEEEEECC
T ss_pred CCCCcEEEEECC----Ch-H-HHHHHH--HhccCCCEEEEEe
Confidence 123699998763 11 1 233222 3689999988654
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=87.24 E-value=1.6 Score=40.47 Aligned_cols=95 Identities=14% Similarity=-0.013 Sum_probs=54.8
Q ss_pred CCCCeEEEECC--CcchHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEE---ecHHHHHHHHhhhcC
Q 021116 154 LRPGRWLDLYS--GTGSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHT---VRVETFLERAEQFVG 227 (317)
Q Consensus 154 ~~~~rVLDlgc--GtG~l~Ieaas-~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~---gD~~~~l~~~~~~~~ 227 (317)
.++++||=.|+ |.|..++.+++ .|+ +|++++.+++.+ +.+++ +|.. .++. .|..+.+....
T Consensus 166 ~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~-~~~~~----lGa~---~~~~~~~~~~~~~~~~~~---- 232 (353)
T 4dup_A 166 TEGESVLIHGGTSGIGTTAIQLARAFGA-EVYATAGSTGKC-EACER----LGAK---RGINYRSEDFAAVIKAET---- 232 (353)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHH-HHHHH----HTCS---EEEETTTSCHHHHHHHHH----
T ss_pred CCCCEEEEEcCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHH-HHHHh----cCCC---EEEeCCchHHHHHHHHHh----
Confidence 46788887742 23444444443 576 799999999988 77764 4543 2233 23333332221
Q ss_pred CCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 228 ~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
...+|+||-.-. ... ++... +.|+++|.+++.-.
T Consensus 233 -~~g~Dvvid~~g--~~~----~~~~~--~~l~~~G~iv~~g~ 266 (353)
T 4dup_A 233 -GQGVDIILDMIG--AAY----FERNI--ASLAKDGCLSIIAF 266 (353)
T ss_dssp -SSCEEEEEESCC--GGG----HHHHH--HTEEEEEEEEECCC
T ss_pred -CCCceEEEECCC--HHH----HHHHH--HHhccCCEEEEEEe
Confidence 357999987532 112 22222 26899999887543
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=87.14 E-value=3.8 Score=37.49 Aligned_cols=102 Identities=10% Similarity=0.045 Sum_probs=58.8
Q ss_pred CCCCeEEEECCCc-chHHHHHH-HcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCC
Q 021116 154 LRPGRWLDLYSGT-GSVGIEAI-SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGP 231 (317)
Q Consensus 154 ~~~~rVLDlgcGt-G~l~Ieaa-s~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~ 231 (317)
.++++||=.|+|. |.+++.++ ..|+..++++|.+++.+ +.++ .+|...-+.....|..+...... ....
T Consensus 159 ~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~-~~a~----~lGa~~~i~~~~~~~~~~~~~~~----~~~g 229 (346)
T 4a2c_A 159 CENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKL-ALAK----SFGAMQTFNSSEMSAPQMQSVLR----ELRF 229 (346)
T ss_dssp CTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHH-HHHH----HTTCSEEEETTTSCHHHHHHHHG----GGCS
T ss_pred CCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHH-HHHH----HcCCeEEEeCCCCCHHHHHHhhc----ccCC
Confidence 4688999888754 23333333 46888889999999987 7775 45754211111234444444332 1245
Q ss_pred ccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCC
Q 021116 232 FDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPL 271 (317)
Q Consensus 232 fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~ 271 (317)
+|+|+-.- +. ...++... +.++++|.+++.-..
T Consensus 230 ~d~v~d~~----G~-~~~~~~~~--~~l~~~G~~v~~g~~ 262 (346)
T 4a2c_A 230 NQLILETA----GV-PQTVELAV--EIAGPHAQLALVGTL 262 (346)
T ss_dssp SEEEEECS----CS-HHHHHHHH--HHCCTTCEEEECCCC
T ss_pred cccccccc----cc-cchhhhhh--heecCCeEEEEEecc
Confidence 78777542 11 22333322 268999998875443
|
| >2g1p_A DNA adenine methylase; DAM methylation, GATC recognition, base flipping, bacterial factor, transferase-DNA complex; HET: DNA SAH; 1.89A {Escherichia coli} PDB: 2ore_D* | Back alignment and structure |
|---|
Probab=86.82 E-value=0.42 Score=43.82 Aligned_cols=70 Identities=11% Similarity=0.003 Sum_probs=41.6
Q ss_pred ceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCC----c---c----------HHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 207 VSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTA----V---D----------YEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 207 ~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~----~---~----------~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
++++.+.|..+.+... +.=|+|++||||.. . . +.++.+.+.. +-+.|+.++++.
T Consensus 157 ~v~i~~~Df~~~i~~~-------~~~~fvY~DPPY~~~~~~~~f~~Y~~~~F~~~dh~~L~~~l~~--l~~~~~~~~lS~ 227 (278)
T 2g1p_A 157 NAFFYCESYADSMARA-------DDSSVVYCDPPYAPLSATANFTAYHTNSFTLEQQAHLAEIAEG--LVERHIPVLISN 227 (278)
T ss_dssp GEEEEECCHHHHHTTC-------CTTEEEEECCSCCCC-----------CCCCHHHHHHHHHHHHH--HHHTTCCEEEEE
T ss_pred CcEEEeCCHHHHHHhc-------CCCCEEEeCCcccccCCCCCccccccCCCCHHHHHHHHHHHHH--HHhcCCeEEEEc
Confidence 4788899988877532 24589999999942 1 1 2233333332 124467787777
Q ss_pred CCCCCccccCCCeEEE
Q 021116 270 PLRTDMLDTCGCLVKI 285 (317)
Q Consensus 270 ~~~~~l~~~~~~~~~~ 285 (317)
.....+.++-.+|.+.
T Consensus 228 ~d~~~i~~ly~~~~i~ 243 (278)
T 2g1p_A 228 HDTMLTREWYQRAKLH 243 (278)
T ss_dssp ECCHHHHHHTTTSEEE
T ss_pred CCCHHHHHHhcCCcEE
Confidence 6554444444566553
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=85.10 E-value=2.9 Score=38.68 Aligned_cols=95 Identities=16% Similarity=0.039 Sum_probs=55.5
Q ss_pred CCC--CeEEEECC--CcchHHHHHH-HcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEE---ecHHHHHHHHhhh
Q 021116 154 LRP--GRWLDLYS--GTGSVGIEAI-SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHT---VRVETFLERAEQF 225 (317)
Q Consensus 154 ~~~--~rVLDlgc--GtG~l~Ieaa-s~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~---gD~~~~l~~~~~~ 225 (317)
.++ ++||-.|+ |.|...+.++ ..|+.+|++++.+++.+ +.+++. +|.. .++. .|..+.+....
T Consensus 157 ~~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~-~~~~~~---~g~~---~~~d~~~~~~~~~~~~~~-- 227 (357)
T 2zb4_A 157 TAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKC-ILLTSE---LGFD---AAINYKKDNVAEQLRESC-- 227 (357)
T ss_dssp CTTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHH-HHHHHT---SCCS---EEEETTTSCHHHHHHHHC--
T ss_pred CCCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHH-HHHHHH---cCCc---eEEecCchHHHHHHHHhc--
Confidence 357 89999886 3334444433 36765899999999887 666542 3542 1222 12323332221
Q ss_pred cCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEE
Q 021116 226 VGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVE 268 (317)
Q Consensus 226 ~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~ 268 (317)
.+.+|+||-+- +. ..++... +.|+++|++++.
T Consensus 228 ---~~~~d~vi~~~----G~--~~~~~~~--~~l~~~G~iv~~ 259 (357)
T 2zb4_A 228 ---PAGVDVYFDNV----GG--NISDTVI--SQMNENSHIILC 259 (357)
T ss_dssp ---TTCEEEEEESC----CH--HHHHHHH--HTEEEEEEEEEC
T ss_pred ---CCCCCEEEECC----CH--HHHHHHH--HHhccCcEEEEE
Confidence 22699998764 11 3344333 378999998864
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=84.55 E-value=2.1 Score=39.47 Aligned_cols=90 Identities=13% Similarity=0.099 Sum_probs=55.3
Q ss_pred CCCCeEEEECCCc-chHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCC
Q 021116 154 LRPGRWLDLYSGT-GSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGP 231 (317)
Q Consensus 154 ~~~~rVLDlgcGt-G~l~Ieaas-~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~ 231 (317)
.++++||-.|+|. |.+++.+++ .|+ +|+++|.+++.+ +.+++ +|.+ .++ .|...+ ...
T Consensus 175 ~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~-~~~~~----lGa~---~v~-~~~~~~----------~~~ 234 (348)
T 3two_A 175 TKGTKVGVAGFGGLGSMAVKYAVAMGA-EVSVFARNEHKK-QDALS----MGVK---HFY-TDPKQC----------KEE 234 (348)
T ss_dssp CTTCEEEEESCSHHHHHHHHHHHHTTC-EEEEECSSSTTH-HHHHH----TTCS---EEE-SSGGGC----------CSC
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCCHHHH-HHHHh----cCCC---eec-CCHHHH----------hcC
Confidence 4688999998743 444444444 576 799999999887 77753 5653 233 443221 137
Q ss_pred ccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 232 FDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 232 fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
+|+||-.-.- ...+...+ +.|+++|.+++.-.
T Consensus 235 ~D~vid~~g~-~~~~~~~~------~~l~~~G~iv~~G~ 266 (348)
T 3two_A 235 LDFIISTIPT-HYDLKDYL------KLLTYNGDLALVGL 266 (348)
T ss_dssp EEEEEECCCS-CCCHHHHH------TTEEEEEEEEECCC
T ss_pred CCEEEECCCc-HHHHHHHH------HHHhcCCEEEEECC
Confidence 9999854321 11223222 37899999987643
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=84.44 E-value=2.3 Score=39.53 Aligned_cols=95 Identities=11% Similarity=-0.061 Sum_probs=53.7
Q ss_pred CCCCeEEEECC--CcchHHHHHH-HcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEe---cHHHHHHHHhhhcC
Q 021116 154 LRPGRWLDLYS--GTGSVGIEAI-SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTV---RVETFLERAEQFVG 227 (317)
Q Consensus 154 ~~~~rVLDlgc--GtG~l~Ieaa-s~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~g---D~~~~l~~~~~~~~ 227 (317)
.++++||-.|+ |.|...+.++ ..|+ +|+++|.+++.+ +.++ .+|.. .++.. |..+.+....
T Consensus 161 ~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga-~Vi~~~~~~~~~-~~~~----~~g~~---~~~~~~~~~~~~~~~~~~---- 227 (354)
T 2j8z_A 161 QAGDYVLIHAGLSGVGTAAIQLTRMAGA-IPLVTAGSQKKL-QMAE----KLGAA---AGFNYKKEDFSEATLKFT---- 227 (354)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHH-HHHH----HHTCS---EEEETTTSCHHHHHHHHT----
T ss_pred CCCCEEEEECCccHHHHHHHHHHHHcCC-EEEEEeCCHHHH-HHHH----HcCCc---EEEecCChHHHHHHHHHh----
Confidence 46789998874 3444444433 3576 799999999887 7763 24542 12222 2222222221
Q ss_pred CCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 228 ~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
....+|+||-+-. ...+...+ +.|+++|.+++.-
T Consensus 228 ~~~~~d~vi~~~G--~~~~~~~~------~~l~~~G~iv~~G 261 (354)
T 2j8z_A 228 KGAGVNLILDCIG--GSYWEKNV------NCLALDGRWVLYG 261 (354)
T ss_dssp TTSCEEEEEESSC--GGGHHHHH------HHEEEEEEEEECC
T ss_pred cCCCceEEEECCC--chHHHHHH------HhccCCCEEEEEe
Confidence 1246999987642 11222222 2578999988754
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=83.96 E-value=0.94 Score=41.87 Aligned_cols=94 Identities=11% Similarity=0.066 Sum_probs=53.9
Q ss_pred CCCeEEEECCCc-chHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEE---ecHHHHHHHHhhhcCCC
Q 021116 155 RPGRWLDLYSGT-GSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHT---VRVETFLERAEQFVGKD 229 (317)
Q Consensus 155 ~~~rVLDlgcGt-G~l~Ieaas-~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~---gD~~~~l~~~~~~~~~~ 229 (317)
++++||-.|+|. |.+++.+++ .|+.+|+++|.+++.+ +.+++- . + .++. .|+.+.+.... .
T Consensus 164 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~-~~~~~l-----a-~--~v~~~~~~~~~~~~~~~~-----~ 229 (343)
T 2dq4_A 164 SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRL-AFARPY-----A-D--RLVNPLEEDLLEVVRRVT-----G 229 (343)
T ss_dssp TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHH-GGGTTT-----C-S--EEECTTTSCHHHHHHHHH-----S
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHH-HHHHHh-----H-H--hccCcCccCHHHHHHHhc-----C
Confidence 688999999732 333344333 6775799999999887 766532 1 2 1222 23333332221 2
Q ss_pred CCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 230 GPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 230 ~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
..+|+||-.-. . ...++... +.|+++|.+++.-
T Consensus 230 ~g~D~vid~~g----~-~~~~~~~~--~~l~~~G~iv~~g 262 (343)
T 2dq4_A 230 SGVEVLLEFSG----N-EAAIHQGL--MALIPGGEARILG 262 (343)
T ss_dssp SCEEEEEECSC----C-HHHHHHHH--HHEEEEEEEEECC
T ss_pred CCCCEEEECCC----C-HHHHHHHH--HHHhcCCEEEEEe
Confidence 46999986532 1 12233322 2689999887654
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=83.78 E-value=3.1 Score=37.52 Aligned_cols=91 Identities=12% Similarity=0.031 Sum_probs=54.9
Q ss_pred CCCCeEEEECC--CcchHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecH-HHHHHHHhhhcCCC
Q 021116 154 LRPGRWLDLYS--GTGSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRV-ETFLERAEQFVGKD 229 (317)
Q Consensus 154 ~~~~rVLDlgc--GtG~l~Ieaas-~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~-~~~l~~~~~~~~~~ 229 (317)
.++++||-.|+ |.|..++.+++ .|+ +|++++.+++.+ +.+++ +|.. .++..+- .++....
T Consensus 124 ~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga-~Vi~~~~~~~~~-~~~~~----~ga~---~~~~~~~~~~~~~~~------- 187 (302)
T 1iz0_A 124 RPGEKVLVQAAAGALGTAAVQVARAMGL-RVLAAASRPEKL-ALPLA----LGAE---EAATYAEVPERAKAW------- 187 (302)
T ss_dssp CTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSGGGS-HHHHH----TTCS---EEEEGGGHHHHHHHT-------
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHh----cCCC---EEEECCcchhHHHHh-------
Confidence 46889999986 34555555443 676 899999999887 76643 5642 2333221 2333221
Q ss_pred CCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 230 GPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 230 ~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
..+|+||- -.- .. ++... +.++++|+++..-
T Consensus 188 ~~~d~vid-~g~--~~----~~~~~--~~l~~~G~~v~~g 218 (302)
T 1iz0_A 188 GGLDLVLE-VRG--KE----VEESL--GLLAHGGRLVYIG 218 (302)
T ss_dssp TSEEEEEE-CSC--TT----HHHHH--TTEEEEEEEEEC-
T ss_pred cCceEEEE-CCH--HH----HHHHH--HhhccCCEEEEEe
Confidence 46999887 422 22 23222 4789999987643
|
| >2dpm_A M.dpnii 1, protein (adenine-specific methyltransferase dpnii 1); DNA adenine methyltransferase, methylase; HET: SAM; 1.80A {Streptococcus pneumoniae} SCOP: c.66.1.28 | Back alignment and structure |
|---|
Probab=82.18 E-value=2.4 Score=38.84 Aligned_cols=82 Identities=10% Similarity=0.135 Sum_probs=47.0
Q ss_pred HHHHHHHHHHhHHHhCCCCceEEE--EecHHHHHHHHhhhcCCCCCccEEEECCCCCC------------c-----cHHH
Q 021116 188 PWVVSNVLIPNLEWTGFLDVSSIH--TVRVETFLERAEQFVGKDGPFDYMSVTPPYTA------------V-----DYEV 248 (317)
Q Consensus 188 ~~al~~~ar~N~~~~gl~~~v~ii--~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~------------~-----~~~~ 248 (317)
++.+ ..+.+-++ ++++. ++|..+.+... ..=|+|++||||.. . ++.+
T Consensus 156 ~~~l-~~~~~~l~------~v~i~~~~~Df~~~i~~~-------~~~~fvY~DPPY~~~~~~~~f~~Y~~~~f~~~dh~~ 221 (284)
T 2dpm_A 156 EELI-SAISVYIN------NNQLEIKVGDFEKAIVDV-------RTGDFVYFDPPYIPLSETSAFTSYTHEGFSFADQVR 221 (284)
T ss_dssp HHHH-HHHHHHHH------HSEEEEEESCGGGGGTTC-------CTTCEEEECCCCCCC-----CCCCCCSSCCHHHHHH
T ss_pred HHHH-HHHHHHhC------CCEEEEeCCCHHHHHHhc-------CCCCEEEeCCCcccccCCCCccccccCCCCHHHHHH
Confidence 4555 44444443 25566 99999886432 34489999999942 0 1234
Q ss_pred HHHHHHHcCCcCCCeEEEEEeCCCCCccccCCCeEEE
Q 021116 249 LMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKI 285 (317)
Q Consensus 249 ~l~~L~~~~lLkpgG~ivv~~~~~~~l~~~~~~~~~~ 285 (317)
+.+.+.. +-+.|+.++++......+.++-.+|.+.
T Consensus 222 L~~~l~~--l~~~g~~~~lS~~d~~~i~~ly~~~~i~ 256 (284)
T 2dpm_A 222 LRDAFKR--LSDTGAYVMLSNSSSALVEELYKDFNIH 256 (284)
T ss_dssp HHHHHHH--HHTTTCEEEEEEESCHHHHHHTTTSEEE
T ss_pred HHHHHHH--HHhcCCEEEEEcCCCHHHHHHHcCCeEE
Confidence 4444432 2245788888877554444444556543
|
| >3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=81.99 E-value=10 Score=33.36 Aligned_cols=83 Identities=14% Similarity=0.003 Sum_probs=52.1
Q ss_pred CCCCeEEEECCCcchHHHH----HHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCC
Q 021116 154 LRPGRWLDLYSGTGSVGIE----AISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKD 229 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ie----aas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~ 229 (317)
..++++|=-|++ |.+|.+ +++.|+ +|+.++.+++.+ +.+.+.+...+....+.++.+|+.+... ...+...-
T Consensus 8 l~~k~~lVTGas-~gIG~aia~~l~~~G~-~V~~~~r~~~~~-~~~~~~l~~~~~~~~~~~~~~D~~~~~~-~~~~~~~~ 83 (267)
T 3t4x_A 8 LKGKTALVTGST-AGIGKAIATSLVAEGA-NVLINGRREENV-NETIKEIRAQYPDAILQPVVADLGTEQG-CQDVIEKY 83 (267)
T ss_dssp CTTCEEEETTCS-SHHHHHHHHHHHHTTC-EEEEEESSHHHH-HHHHHHHHHHCTTCEEEEEECCTTSHHH-HHHHHHHC
T ss_pred cCCCEEEEeCCC-cHHHHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHHHHHhhCCCceEEEEecCCCCHHH-HHHHHHhc
Confidence 567888877765 445443 456676 699999999887 6666666655433457788888754321 00000012
Q ss_pred CCccEEEECCC
Q 021116 230 GPFDYMSVTPP 240 (317)
Q Consensus 230 ~~fDlV~~dPP 240 (317)
+..|++|.+.-
T Consensus 84 g~id~lv~nAg 94 (267)
T 3t4x_A 84 PKVDILINNLG 94 (267)
T ss_dssp CCCSEEEECCC
T ss_pred CCCCEEEECCC
Confidence 57899998753
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=81.40 E-value=10 Score=28.14 Aligned_cols=71 Identities=17% Similarity=0.113 Sum_probs=45.5
Q ss_pred CCCeEEEECCCcchHHHHH----HHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHH--HHHhhhcCC
Q 021116 155 RPGRWLDLYSGTGSVGIEA----ISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL--ERAEQFVGK 228 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Iea----as~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l--~~~~~~~~~ 228 (317)
.+.+|+=+|+ |.+|..+ +..|..+|+++|.++..+ +.+. .. .+.++..|+.+.. ...
T Consensus 4 ~~~~v~I~G~--G~iG~~~~~~l~~~g~~~v~~~~r~~~~~-~~~~----~~----~~~~~~~d~~~~~~~~~~------ 66 (118)
T 3ic5_A 4 MRWNICVVGA--GKIGQMIAALLKTSSNYSVTVADHDLAAL-AVLN----RM----GVATKQVDAKDEAGLAKA------ 66 (118)
T ss_dssp TCEEEEEECC--SHHHHHHHHHHHHCSSEEEEEEESCHHHH-HHHH----TT----TCEEEECCTTCHHHHHHH------
T ss_pred CcCeEEEECC--CHHHHHHHHHHHhCCCceEEEEeCCHHHH-HHHH----hC----CCcEEEecCCCHHHHHHH------
Confidence 3567888887 6666543 345645799999999887 5544 12 2456777765432 111
Q ss_pred CCCccEEEECCCCC
Q 021116 229 DGPFDYMSVTPPYT 242 (317)
Q Consensus 229 ~~~fDlV~~dPPy~ 242 (317)
-..+|+||...|+.
T Consensus 67 ~~~~d~vi~~~~~~ 80 (118)
T 3ic5_A 67 LGGFDAVISAAPFF 80 (118)
T ss_dssp TTTCSEEEECSCGG
T ss_pred HcCCCEEEECCCch
Confidence 14689999887754
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=81.38 E-value=5.1 Score=36.92 Aligned_cols=93 Identities=15% Similarity=0.076 Sum_probs=54.3
Q ss_pred CCCeEEEECCCcchHHH---HHHH-cCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEE--ecHHHHHHHHhhhcCC
Q 021116 155 RPGRWLDLYSGTGSVGI---EAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHT--VRVETFLERAEQFVGK 228 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~I---eaas-~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~--gD~~~~l~~~~~~~~~ 228 (317)
++++||=.| |+|.+|+ .+++ .|+ +|++++.+++.+ +.+++ +|.+ .++. .|..+.+... .
T Consensus 150 ~g~~VlV~g-g~G~vG~~a~qla~~~Ga-~Vi~~~~~~~~~-~~~~~----lGa~---~vi~~~~~~~~~~~~~-----~ 214 (346)
T 3fbg_A 150 EGKTLLIIN-GAGGVGSIATQIAKAYGL-RVITTASRNETI-EWTKK----MGAD---IVLNHKESLLNQFKTQ-----G 214 (346)
T ss_dssp TTCEEEEES-TTSHHHHHHHHHHHHTTC-EEEEECCSHHHH-HHHHH----HTCS---EEECTTSCHHHHHHHH-----T
T ss_pred CCCEEEEEc-CCCHHHHHHHHHHHHcCC-EEEEEeCCHHHH-HHHHh----cCCc---EEEECCccHHHHHHHh-----C
Confidence 578888774 3445554 3333 577 899999999988 88765 4643 1222 2333333222 2
Q ss_pred CCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 229 ~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
...+|+||-.- + ....++... +.|+++|.++...
T Consensus 215 ~~g~Dvv~d~~----g-~~~~~~~~~--~~l~~~G~iv~~~ 248 (346)
T 3fbg_A 215 IELVDYVFCTF----N-TDMYYDDMI--QLVKPRGHIATIV 248 (346)
T ss_dssp CCCEEEEEESS----C-HHHHHHHHH--HHEEEEEEEEESS
T ss_pred CCCccEEEECC----C-chHHHHHHH--HHhccCCEEEEEC
Confidence 35799988642 1 122333332 2689999997643
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=81.27 E-value=3.4 Score=38.30 Aligned_cols=94 Identities=9% Similarity=-0.002 Sum_probs=52.3
Q ss_pred CeEEEECCCc-chHH-HHHH-H-cCCCEEEEEeCCHH---HHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCC
Q 021116 157 GRWLDLYSGT-GSVG-IEAI-S-RGCSEVHFVEMDPW---VVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKD 229 (317)
Q Consensus 157 ~rVLDlgcGt-G~l~-Ieaa-s-~Ga~~V~aVDin~~---al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~ 229 (317)
++||=.|+|. |.++ +.++ + .|+.+|+++|.+++ .+ +.++ .+|.+ .+.....|+.+ +... .
T Consensus 174 ~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~-~~~~----~lGa~-~v~~~~~~~~~-i~~~------~ 240 (357)
T 2b5w_A 174 SSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTI-DIIE----ELDAT-YVDSRQTPVED-VPDV------Y 240 (357)
T ss_dssp CEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHH-HHHH----HTTCE-EEETTTSCGGG-HHHH------S
T ss_pred CEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHH-HHHH----HcCCc-ccCCCccCHHH-HHHh------C
Confidence 8999999732 4444 4444 3 57766999999887 66 6665 35542 11000123333 2221 1
Q ss_pred CCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 230 GPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 230 ~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
+.+|+||-.- +. ...++... +.|+++|++++.-.
T Consensus 241 gg~Dvvid~~----g~-~~~~~~~~--~~l~~~G~iv~~g~ 274 (357)
T 2b5w_A 241 EQMDFIYEAT----GF-PKHAIQSV--QALAPNGVGALLGV 274 (357)
T ss_dssp CCEEEEEECS----CC-HHHHHHHH--HHEEEEEEEEECCC
T ss_pred CCCCEEEECC----CC-hHHHHHHH--HHHhcCCEEEEEeC
Confidence 3799998542 11 12233322 26899999887543
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=81.08 E-value=11 Score=34.43 Aligned_cols=84 Identities=17% Similarity=0.200 Sum_probs=54.6
Q ss_pred CCCCeEEEECCCcchHHHH----HHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHH---HHhhhc
Q 021116 154 LRPGRWLDLYSGTGSVGIE----AISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE---RAEQFV 226 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ie----aas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~---~~~~~~ 226 (317)
..+++||=-|++.| +|.+ ++++|+ +|++++.++..+ +.+.+.++..+...++.++..|+.+... ......
T Consensus 6 l~~k~vlVTGas~g-IG~~la~~l~~~G~-~Vv~~~r~~~~~-~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~ 82 (319)
T 3ioy_A 6 FAGRTAFVTGGANG-VGIGLVRQLLNQGC-KVAIADIRQDSI-DKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVE 82 (319)
T ss_dssp CTTCEEEEETTTST-HHHHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCEEEEcCCchH-HHHHHHHHHHHCCC-EEEEEECCHHHH-HHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHH
Confidence 46778888887654 4443 456776 699999999987 7777777666543468889988754321 111010
Q ss_pred CCCCCccEEEECCC
Q 021116 227 GKDGPFDYMSVTPP 240 (317)
Q Consensus 227 ~~~~~fDlV~~dPP 240 (317)
...+..|++|.+.-
T Consensus 83 ~~~g~id~lv~nAg 96 (319)
T 3ioy_A 83 ARFGPVSILCNNAG 96 (319)
T ss_dssp HHTCCEEEEEECCC
T ss_pred HhCCCCCEEEECCC
Confidence 11257899998753
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=80.78 E-value=15 Score=31.46 Aligned_cols=82 Identities=12% Similarity=0.071 Sum_probs=52.5
Q ss_pred CCCCeEEEECCCcchHHHH----HHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHH---HHhhhc
Q 021116 154 LRPGRWLDLYSGTGSVGIE----AISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE---RAEQFV 226 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ie----aas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~---~~~~~~ 226 (317)
..++++|=.|++ |.+|.+ +++.|+ +|+.++.++..+ +.+.+.++..+. ++.++..|+.+... ......
T Consensus 3 l~~k~vlITGas-~gIG~~~a~~l~~~G~-~v~~~~r~~~~~-~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~ 77 (247)
T 3lyl_A 3 LNEKVALVTGAS-RGIGFEVAHALASKGA-TVVGTATSQASA-EKFENSMKEKGF--KARGLVLNISDIESIQNFFAEIK 77 (247)
T ss_dssp TTTCEEEESSCS-SHHHHHHHHHHHHTTC-EEEEEESSHHHH-HHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCC-ChHHHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHHHHHhcCC--ceEEEEecCCCHHHHHHHHHHHH
Confidence 456778877754 455543 456776 699999999887 766666666553 48889988754321 111111
Q ss_pred CCCCCccEEEECCC
Q 021116 227 GKDGPFDYMSVTPP 240 (317)
Q Consensus 227 ~~~~~fDlV~~dPP 240 (317)
...+..|++|.+.-
T Consensus 78 ~~~~~id~li~~Ag 91 (247)
T 3lyl_A 78 AENLAIDILVNNAG 91 (247)
T ss_dssp HTTCCCSEEEECCC
T ss_pred HHcCCCCEEEECCC
Confidence 12357899998754
|
| >3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=80.73 E-value=11 Score=32.73 Aligned_cols=84 Identities=10% Similarity=0.101 Sum_probs=52.0
Q ss_pred CCCCeEEEECCCcchHHHH----HHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCC-CceEEEEecHHHHHH---HHhhh
Q 021116 154 LRPGRWLDLYSGTGSVGIE----AISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFL-DVSSIHTVRVETFLE---RAEQF 225 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ie----aas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~-~~v~ii~gD~~~~l~---~~~~~ 225 (317)
..++++|=-|++.| +|.+ +++.|+ +|+.++.+++.+ +.+.+.+...+-. .++.++.+|+.+... .....
T Consensus 5 ~~~k~~lVTGas~G-IG~aia~~l~~~G~-~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 81 (250)
T 3nyw_A 5 KQKGLAIITGASQG-IGAVIAAGLATDGY-RVVLIARSKQNL-EKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDI 81 (250)
T ss_dssp CCCCEEEEESTTSH-HHHHHHHHHHHHTC-EEEEEESCHHHH-HHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcH-HHHHHHHHHHHCCC-EEEEEECCHHHH-HHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHH
Confidence 45778888886654 4443 456676 799999999987 7766666554221 357888888764321 01000
Q ss_pred cCCCCCccEEEECCC
Q 021116 226 VGKDGPFDYMSVTPP 240 (317)
Q Consensus 226 ~~~~~~fDlV~~dPP 240 (317)
...-+..|++|.+.-
T Consensus 82 ~~~~g~iD~lvnnAg 96 (250)
T 3nyw_A 82 HQKYGAVDILVNAAA 96 (250)
T ss_dssp HHHHCCEEEEEECCC
T ss_pred HHhcCCCCEEEECCC
Confidence 001157899998753
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=80.61 E-value=17 Score=31.61 Aligned_cols=84 Identities=19% Similarity=0.142 Sum_probs=51.8
Q ss_pred CCCCeEEEECC-Ccch---HHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHH--H-Hhhhc
Q 021116 154 LRPGRWLDLYS-GTGS---VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE--R-AEQFV 226 (317)
Q Consensus 154 ~~~~rVLDlgc-GtG~---l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~--~-~~~~~ 226 (317)
..++++|=.|+ |+|. ++..+++.|+ +|+.++.+...+ +.+.+.++..+- .++.++.+|+.+... . .....
T Consensus 20 l~~k~vlITGasg~GIG~~~a~~l~~~G~-~V~~~~r~~~~~-~~~~~~l~~~~~-~~~~~~~~Dl~~~~~v~~~~~~~~ 96 (266)
T 3o38_A 20 LKGKVVLVTAAAGTGIGSTTARRALLEGA-DVVISDYHERRL-GETRDQLADLGL-GRVEAVVCDVTSTEAVDALITQTV 96 (266)
T ss_dssp TTTCEEEESSCSSSSHHHHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHHHTTCS-SCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCchHHHHHHHHHHCCC-EEEEecCCHHHH-HHHHHHHHhcCC-CceEEEEeCCCCHHHHHHHHHHHH
Confidence 45778887776 4442 2223556776 699999999887 666666654432 458899998754321 1 10000
Q ss_pred CCCCCccEEEECCC
Q 021116 227 GKDGPFDYMSVTPP 240 (317)
Q Consensus 227 ~~~~~fDlV~~dPP 240 (317)
...+..|++|.+.-
T Consensus 97 ~~~g~id~li~~Ag 110 (266)
T 3o38_A 97 EKAGRLDVLVNNAG 110 (266)
T ss_dssp HHHSCCCEEEECCC
T ss_pred HHhCCCcEEEECCC
Confidence 01147899998754
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=80.54 E-value=18 Score=31.13 Aligned_cols=82 Identities=16% Similarity=0.195 Sum_probs=52.7
Q ss_pred CCCCeEEEECCCcchHHHH----HHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHH--H-Hhhhc
Q 021116 154 LRPGRWLDLYSGTGSVGIE----AISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE--R-AEQFV 226 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ie----aas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~--~-~~~~~ 226 (317)
..++++|=-|++ |.+|.+ +++.|+ +|+.++.+++.+ +.+.+.++..+ .++.++.+|+.+... . .....
T Consensus 7 ~~~k~vlITGas-~giG~~~a~~l~~~G~-~V~~~~r~~~~~-~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~ 81 (253)
T 3qiv_A 7 FENKVGIVTGSG-GGIGQAYAEALAREGA-AVVVADINAEAA-EAVAKQIVADG--GTAISVAVDVSDPESAKAMADRTL 81 (253)
T ss_dssp TTTCEEEEETTT-SHHHHHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHHHHTT--CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCC-ChHHHHHHHHHHHCCC-EEEEEcCCHHHH-HHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHH
Confidence 467888888865 445543 456676 699999999988 77766666544 357888988765321 1 10000
Q ss_pred CCCCCccEEEECCC
Q 021116 227 GKDGPFDYMSVTPP 240 (317)
Q Consensus 227 ~~~~~fDlV~~dPP 240 (317)
...+..|++|.+.-
T Consensus 82 ~~~g~id~li~~Ag 95 (253)
T 3qiv_A 82 AEFGGIDYLVNNAA 95 (253)
T ss_dssp HHHSCCCEEEECCC
T ss_pred HHcCCCCEEEECCC
Confidence 01147899998763
|
| >3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0 | Back alignment and structure |
|---|
Probab=80.33 E-value=16 Score=27.22 Aligned_cols=67 Identities=15% Similarity=0.096 Sum_probs=46.0
Q ss_pred EEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCccHHHHHHHHHH
Q 021116 180 EVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISK 255 (317)
Q Consensus 180 ~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~ 255 (317)
+|..||-++... +..+.-++..|+. +. ...+..+.+..+. ...+|+|++|.-....+..++++.+.+
T Consensus 5 ~ilivdd~~~~~-~~l~~~L~~~g~~--v~-~~~~~~~a~~~l~-----~~~~dlii~D~~l~~~~g~~~~~~l~~ 71 (127)
T 3i42_A 5 QALIVEDYQAAA-ETFKELLEMLGFQ--AD-YVMSGTDALHAMS-----TRGYDAVFIDLNLPDTSGLALVKQLRA 71 (127)
T ss_dssp EEEEECSCHHHH-HHHHHHHHHTTEE--EE-EESSHHHHHHHHH-----HSCCSEEEEESBCSSSBHHHHHHHHHH
T ss_pred eEEEEcCCHHHH-HHHHHHHHHcCCC--EE-EECCHHHHHHHHH-----hcCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 689999999987 8888888887762 32 3456666665543 256999999854333345566777754
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* | Back alignment and structure |
|---|
Probab=80.27 E-value=25 Score=30.68 Aligned_cols=83 Identities=16% Similarity=0.043 Sum_probs=52.1
Q ss_pred CCCCeEEEECCCcchHHHH----HHHcCCCEEEEEeCCHHHHHHHHHHhHHH-hCCCCceEEEEecHHHHHH--H-Hhhh
Q 021116 154 LRPGRWLDLYSGTGSVGIE----AISRGCSEVHFVEMDPWVVSNVLIPNLEW-TGFLDVSSIHTVRVETFLE--R-AEQF 225 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ie----aas~Ga~~V~aVDin~~al~~~ar~N~~~-~gl~~~v~ii~gD~~~~l~--~-~~~~ 225 (317)
..++++|=-|++.| +|.+ +++.|+ +|+.++.+++.+ +.+.+.+.. .+- .++.++.+|+.+... . ....
T Consensus 6 l~~k~~lVTGas~G-IG~aia~~l~~~G~-~V~~~~r~~~~~-~~~~~~l~~~~~~-~~~~~~~~Dv~~~~~v~~~~~~~ 81 (265)
T 3lf2_A 6 LSEAVAVVTGGSSG-IGLATVELLLEAGA-AVAFCARDGERL-RAAESALRQRFPG-ARLFASVCDVLDALQVRAFAEAC 81 (265)
T ss_dssp CTTCEEEEETCSSH-HHHHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHHHHHSTT-CCEEEEECCTTCHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCh-HHHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHHHHHHhcCC-ceEEEEeCCCCCHHHHHHHHHHH
Confidence 56788888886654 4433 456676 699999999987 766666654 332 347888888754321 0 0000
Q ss_pred cCCCCCccEEEECCC
Q 021116 226 VGKDGPFDYMSVTPP 240 (317)
Q Consensus 226 ~~~~~~fDlV~~dPP 240 (317)
...-+..|++|.+.-
T Consensus 82 ~~~~g~id~lvnnAg 96 (265)
T 3lf2_A 82 ERTLGCASILVNNAG 96 (265)
T ss_dssp HHHHCSCSEEEECCC
T ss_pred HHHcCCCCEEEECCC
Confidence 001157899998754
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=80.25 E-value=6.6 Score=35.25 Aligned_cols=82 Identities=13% Similarity=0.060 Sum_probs=53.8
Q ss_pred CCCCeEEEECCCcch---HHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHH---HHhhhcC
Q 021116 154 LRPGRWLDLYSGTGS---VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE---RAEQFVG 227 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~---l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~---~~~~~~~ 227 (317)
++++++|=-|++.|. ++..+++.|+ +|+.+|.+++.+ +.+.+.++..|. ++..+.+|+.+... ...+...
T Consensus 7 L~gKvalVTGas~GIG~aia~~la~~Ga-~Vvi~~~~~~~~-~~~~~~l~~~g~--~~~~~~~Dv~~~~~v~~~~~~~~~ 82 (255)
T 4g81_D 7 LTGKTALVTGSARGLGFAYAEGLAAAGA-RVILNDIRATLL-AESVDTLTRKGY--DAHGVAFDVTDELAIEAAFSKLDA 82 (255)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEECCSCHHHH-HHHHHHHHHTTC--CEEECCCCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHH-HHHHHHHHhcCC--cEEEEEeeCCCHHHHHHHHHHHHH
Confidence 578888888876652 2233556787 699999999998 777677766664 47788888654321 1111112
Q ss_pred CCCCccEEEECC
Q 021116 228 KDGPFDYMSVTP 239 (317)
Q Consensus 228 ~~~~fDlV~~dP 239 (317)
.-+..|+++.|.
T Consensus 83 ~~G~iDiLVNNA 94 (255)
T 4g81_D 83 EGIHVDILINNA 94 (255)
T ss_dssp TTCCCCEEEECC
T ss_pred HCCCCcEEEECC
Confidence 336789999875
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 317 | ||||
| d2ifta1 | 183 | c.66.1.46 (A:11-193) Putative methylase HI0767 {Ha | 3e-24 | |
| d2fhpa1 | 182 | c.66.1.46 (A:1-182) Putative methylase EF2452 {Ent | 9e-24 | |
| d2fpoa1 | 183 | c.66.1.46 (A:10-192) Methylase YhhF {Escherichia c | 3e-23 | |
| d2esra1 | 152 | c.66.1.46 (A:28-179) Putative methyltransferase SP | 2e-19 | |
| d1ws6a1 | 171 | c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {T | 2e-14 | |
| d2igta1 | 309 | c.66.1.51 (A:1-309) Putative methyltransferase Atu | 1e-07 | |
| d1wy7a1 | 201 | c.66.1.32 (A:4-204) Hypothetical protein PH1948 {A | 7e-04 |
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} Length = 183 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Score = 94.9 bits (235), Expect = 3e-24
Identities = 38/190 (20%), Positives = 76/190 (40%), Gaps = 11/190 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G R +KL +RP + VK F+ L + LD ++G+GS
Sbjct: 3 VRIIAGLWRGRKLPVLNSEGLRPTGDRVKETLFNWLMP------YIHQSECLDGFAGSGS 56
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G EA+SR +V F+E+D V + + SS + +
Sbjct: 57 LGFEALSRQAKKVTFLELDKTVANQLKKNLQTL----KCSSEQAEVINQSSLDFLKQPQN 112
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
FD + + PP+ E ++ + ++ + ++ I VE ++ +K++
Sbjct: 113 QPHFDVVFLDPPFHFNLAEQAISLLCENNWLKPNALIYVETEKDKPLITPEN-WTLLKEK 171
Query: 289 RFGRTHLAIY 298
G +Y
Sbjct: 172 TTGIVSYRLY 181
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} Length = 182 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Score = 93.8 bits (232), Expect = 9e-24
Identities = 46/190 (24%), Positives = 84/190 (44%), Gaps = 10/190 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G+ ++L + G + RP + VK + F+++ G LDLYSG+G
Sbjct: 1 MRVISGEYGGRRLKALDGDNTRPTTDKVKESIFNMIGP------YFDGGMALDLYSGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ IEA+SRG + +E + + + VR EQF +
Sbjct: 55 LAIEAVSRGMDKSICIEKNFAALKVIKENIAIT----KEPEKFEVRKMDANRALEQFYEE 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
FD + + PPY + + ++ + L+ ++ IV E + +T G L K ++
Sbjct: 111 KLQFDLVLLDPPYAKQEIVSQLEKMLERQLLTNEAVIVCETDKTVKLPETIGTLKKTRET 170
Query: 289 RFGRTHLAIY 298
+G T + IY
Sbjct: 171 VYGITQVTIY 180
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} Length = 183 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Score = 92.3 bits (228), Expect = 3e-23
Identities = 35/202 (17%), Positives = 78/202 (38%), Gaps = 21/202 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R +KL P +RP + V+ F+ + + LD ++G+G+
Sbjct: 3 IRIIGGQWRGRKLPVPDSPGLRPTTDRVRETLFNW------LAPVIVDAQCLDCFAGSGA 56
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA+SR + +EMD V ++ K
Sbjct: 57 LGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAM--------SFLAQK 108
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
P + + V PP+ E + + + + ++ I VE + + +++
Sbjct: 109 GTPHNIVFVDPPFRRGLLEETINLLEDNGWLADEALIYVESEVENGLPTVPANWSLHREK 168
Query: 289 RFGRTHLAIYGPDWAQKKRKSE 310
G+ +Y +R+++
Sbjct: 169 VAGQVAYRLY-------QREAQ 183
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} Length = 152 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Score = 81.1 bits (199), Expect = 2e-19
Identities = 34/163 (20%), Positives = 63/163 (38%), Gaps = 13/163 (7%)
Query: 136 VKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVL 195
V+GA F+++ GR LDL++G+G + IEA+SRG S VE + + +
Sbjct: 1 VRGAIFNMIGP------YFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQ 54
Query: 196 IPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISK 255
+ +E G FD + + PPY + ++
Sbjct: 55 DNIIMTK-------AENRFTLLKMEAERAIDCLTGRFDLVFLDPPYAKETIVATIEALAA 107
Query: 256 SALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDRRFGRTHLAIY 298
L+ + +V E + L K++ +G + + +Y
Sbjct: 108 KNLLSEQVMVVCETDKTVLLPKEIATLGIWKEKIYGISKVTVY 150
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Score = 68.0 bits (165), Expect = 2e-14
Identities = 46/191 (24%), Positives = 72/191 (37%), Gaps = 22/191 (11%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
++++LGGKAR L P RP ++ A FD L+ R GR+LD ++G+G
Sbjct: 1 VVRILGGKARGVALKVPAS--ARPSPVRLRKALFDYLR-----LRYPRRGRFLDPFAGSG 53
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+VG+EA S G V + V V +
Sbjct: 54 AVGLEAASEGWEAVLVEKDPEAVRLLKENVRRTGL-------GARVVALPVEVFLPEAKA 106
Query: 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
+ F + PPY A+D L ++ S LV V+++P L +
Sbjct: 107 QGERFTVAFMAPPY-AMDLAALFGELLASGLVEAGGLYVLQHPKDLY-------LPLGER 158
Query: 288 RRFGRTHLAIY 298
R +G L +
Sbjct: 159 RVYGENALTLV 169
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} Length = 309 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Score = 49.8 bits (118), Expect = 1e-07
Identities = 15/89 (16%), Positives = 29/89 (32%), Gaps = 4/89 (4%)
Query: 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVR 214
RP + L+L+ TG + A + G V+ + N G
Sbjct: 132 RPLKVLNLFGYTGVASLVAAAAGAEVT-HVDASKKAIG-WAKENQVLAGLEQAP--IRWI 187
Query: 215 VETFLERAEQFVGKDGPFDYMSVTPPYTA 243
E ++ ++ + +D + PP
Sbjct: 188 CEDAMKFIQREERRGSTYDIILTDPPKFG 216
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 201 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 37.9 bits (87), Expect = 7e-04
Identities = 24/102 (23%), Positives = 40/102 (39%), Gaps = 13/102 (12%)
Query: 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTV 213
+ DL +GTG + A+ G EV VE+D V +VLI NL
Sbjct: 45 IEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAV-DVLIENLGEFK---------G 94
Query: 214 RVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISK 255
+ + F+ +F + D + + PP+ + + K
Sbjct: 95 KFKVFIGDVSEFNSR---VDIVIMNPPFGSQRKHADRPFLLK 133
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 317 | |||
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 100.0 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 100.0 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 100.0 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 100.0 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 99.98 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.79 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.78 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.77 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 99.76 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 99.75 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 99.75 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 99.74 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 99.71 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 99.7 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.67 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 99.66 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 99.64 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 99.61 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.61 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.53 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.52 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.5 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 99.49 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.47 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.45 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.45 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.44 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.44 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.43 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.42 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.41 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.39 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.39 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.39 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.38 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.37 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.36 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.36 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.36 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 99.34 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.31 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 99.31 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.3 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.29 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 99.28 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.27 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 99.27 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.27 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.27 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.26 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.25 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.25 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.22 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.2 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.19 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.18 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.17 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 99.16 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.13 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.13 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.12 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 99.09 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.07 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.06 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.06 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.04 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 99.01 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 98.98 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 98.95 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 98.94 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 98.94 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 98.94 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 98.93 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 98.91 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 98.9 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 98.85 | |
| d1o9ga_ | 249 | rRNA methyltransferase AviRa {Streptomyces viridoc | 98.83 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 98.82 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 98.82 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 98.76 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 98.71 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 98.7 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 98.66 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 98.65 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 98.62 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 98.6 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 98.57 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 98.57 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 98.56 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 98.51 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 98.37 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 98.36 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 98.34 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 98.22 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 98.03 | |
| d1dcta_ | 324 | DNA methylase HaeIII {Haemophilus aegyptius [TaxId | 97.78 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 97.78 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 97.64 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 97.6 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 97.6 | |
| d2c7pa1 | 327 | DNA methylase HhaI {Haemophilus haemolyticus [TaxI | 97.59 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 97.5 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 97.46 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 97.43 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 97.4 | |
| d1g55a_ | 343 | DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | 97.39 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 97.38 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 96.87 | |
| d2oo3a1 | 271 | Uncharacterized protein LPG1296 {Legionella pneumo | 96.84 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 96.75 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 96.71 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 96.65 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 96.32 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 96.16 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 95.65 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 95.31 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 95.26 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 95.24 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 94.94 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 94.73 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 94.15 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 94.05 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 93.97 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 93.26 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 93.15 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 92.83 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 92.58 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 91.79 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 91.67 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 91.48 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 90.75 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 90.74 | |
| d2py6a1 | 395 | Methyltransferase FkbM {Methylobacillus flagellatu | 90.73 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 90.34 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 89.61 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 88.84 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 87.92 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 87.85 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 87.77 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 87.49 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 87.37 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 86.62 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 86.4 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 86.26 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 86.12 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 86.11 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 86.06 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 86.04 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 85.68 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 84.26 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 83.37 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 83.17 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 83.15 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 83.07 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 82.96 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 82.94 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 82.76 | |
| d1u0sy_ | 118 | CheY protein {Thermotoga maritima [TaxId: 2336]} | 82.69 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 82.68 | |
| d2dpma_ | 275 | DNA methylase DpnM {Streptococcus pneumoniae [TaxI | 82.49 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 82.24 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 82.0 | |
| d1zesa1 | 121 | PhoB receiver domain {Escherichia coli [TaxId: 562 | 81.44 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 80.8 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 80.55 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 80.42 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 80.11 |
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=100.00 E-value=1.9e-39 Score=284.15 Aligned_cols=181 Identities=25% Similarity=0.423 Sum_probs=166.0
Q ss_pred EEEEeeeecceEEecCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCH
Q 021116 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDP 188 (317)
Q Consensus 109 l~ii~G~~~G~~l~~p~~~~~rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~ 188 (317)
|||++|+|+|++|.+|++..+|||++++++++||+|... .++.+|||+|||||++|+||+++|+.+|++||.|+
T Consensus 1 mrIi~G~~kg~~l~~~~~~~~RPt~~~vrealFn~l~~~------~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~ 74 (182)
T d2fhpa1 1 MRVISGEYGGRRLKALDGDNTRPTTDKVKESIFNMIGPY------FDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNF 74 (182)
T ss_dssp CBCCSSTTTTCBCCCCCCCSSCCCCHHHHHHHHHHHCSC------CSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCH
T ss_pred CEEeccccCCCEecCCCCCCcCcCcHHHHHHHHHHHHHh------cCCCEEEEcccccccccceeeecchhHHHHHHHHH
Confidence 588999999999999999999999999999999999764 57899999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEE
Q 021116 189 WVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVE 268 (317)
Q Consensus 189 ~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~ 268 (317)
.++ +.+++|++.++..++++++++|+.+++..+. ....+||+||+||||....+.+.++.+.+..+|+++|+|++|
T Consensus 75 ~a~-~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~---~~~~~fDlIflDPPY~~~~~~~~l~~i~~~~~L~~~giIi~E 150 (182)
T d2fhpa1 75 AAL-KVIKENIAITKEPEKFEVRKMDANRALEQFY---EEKLQFDLVLLDPPYAKQEIVSQLEKMLERQLLTNEAVIVCE 150 (182)
T ss_dssp HHH-HHHHHHHHHHTCGGGEEEEESCHHHHHHHHH---HTTCCEEEEEECCCGGGCCHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred HHH-HHHHHHhhhhhcccccccccccchhhhhhhc---ccCCCcceEEechhhhhhHHHHHHHHHHHCCCCCCCEEEEEE
Confidence 999 9999999999998889999999999987642 124689999999999888899999999877899999999999
Q ss_pred eCCCCCccccCCCeEEEEEeecCceEEEEEe
Q 021116 269 YPLRTDMLDTCGCLVKIKDRRFGRTHLAIYG 299 (317)
Q Consensus 269 ~~~~~~l~~~~~~~~~~~~r~yG~~~l~~~~ 299 (317)
++....+++....|.++++++||++.+.||+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~k~YG~t~l~~~r 181 (182)
T d2fhpa1 151 TDKTVKLPETIGTLKKTRETVYGITQVTIYR 181 (182)
T ss_dssp EETTCCCCSEETTEEEEEEEEETTEEEEEEE
T ss_pred cCCCCCCccCCCceEEEEEEeeCCEEEEEEe
Confidence 9988877766788999999999999999996
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=5.1e-39 Score=281.16 Aligned_cols=179 Identities=23% Similarity=0.397 Sum_probs=158.0
Q ss_pred eEEEEeeeecceEEecCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCC
Q 021116 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMD 187 (317)
Q Consensus 108 il~ii~G~~~G~~l~~p~~~~~rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin 187 (317)
-|||++|+|+|+++.+|++..+|||+++|++++||+|... ..+.+|||+|||||++|+||+++|+.+|++||.|
T Consensus 2 ~mrIi~G~~kg~~l~~~~~~~~RPt~~~vre~lfn~l~~~------~~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~ 75 (183)
T d2fpoa1 2 QIRIIGGQWRGRKLPVPDSPGLRPTTDRVRETLFNWLAPV------IVDAQCLDCFAGSGALGLEALSRYAAGATLIEMD 75 (183)
T ss_dssp EEECCSGGGTTCEEECCCC------CHHHHHHHHHHHHHH------HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSC
T ss_pred CeEEEecccCCCEecCCCCCCcCcCcHHHHHHHHhhhhcc------cchhhhhhhhccccceeeeEEecCcceeEEEEEe
Confidence 4799999999999999999999999999999999999874 5789999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEE
Q 021116 188 PWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVV 267 (317)
Q Consensus 188 ~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv 267 (317)
+.++ +.+++|++.++..+ ++++++|+.+++.. ...+||+||+||||....+++.++.+.+..+|+++|++++
T Consensus 76 ~~a~-~~~k~N~~~~~~~~-~~ii~~d~~~~l~~------~~~~fDlIf~DPPY~~~~~~~~l~~l~~~~~L~~~~iIii 147 (183)
T d2fpoa1 76 RAVS-QQLIKNLATLKAGN-ARVVNSNAMSFLAQ------KGTPHNIVFVDPPFRRGLLEETINLLEDNGWLADEALIYV 147 (183)
T ss_dssp HHHH-HHHHHHHHHTTCCS-EEEECSCHHHHHSS------CCCCEEEEEECCSSSTTTHHHHHHHHHHTTCEEEEEEEEE
T ss_pred echh-hHHHHHHhhccccc-eeeeeecccccccc------cccccCEEEEcCccccchHHHHHHHHHHCCCCCCCeEEEE
Confidence 9999 99999999988854 89999999988743 3578999999999998889999999988889999999999
Q ss_pred EeCCCCCccccCCCeEEEEEeecCceEEEEEee
Q 021116 268 EYPLRTDMLDTCGCLVKIKDRRFGRTHLAIYGP 300 (317)
Q Consensus 268 ~~~~~~~l~~~~~~~~~~~~r~yG~~~l~~~~p 300 (317)
|++....++....+|.++++++||++.+.||+.
T Consensus 148 E~~~~~~~~~~~~~~~i~k~k~yG~t~i~~~~k 180 (183)
T d2fpoa1 148 ESEVENGLPTVPANWSLHREKVAGQVAYRLYQR 180 (183)
T ss_dssp EEEGGGCSCCCCTTEEEEEEEEETTEEEEEEEE
T ss_pred EecCcCCcccCCCCcEEEEEEEeCcEEEEEEEE
Confidence 998777776667899999999999999999964
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=100.00 E-value=1.5e-38 Score=278.15 Aligned_cols=180 Identities=24% Similarity=0.353 Sum_probs=152.3
Q ss_pred eEEEEeeeecceEEecCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCC
Q 021116 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMD 187 (317)
Q Consensus 108 il~ii~G~~~G~~l~~p~~~~~rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin 187 (317)
-|||++|.|+|++|.+|.+..+|||++++++++||+++.. ..+.+|||+|||||++|+||++||+.+|++||.|
T Consensus 2 ~mrIi~G~~kg~~l~~~~~~~~RPt~~~vrealFn~l~~~------~~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~ 75 (183)
T d2ifta1 2 EVRIIAGLWRGRKLPVLNSEGLRPTGDRVKETLFNWLMPY------IHQSECLDGFAGSGSLGFEALSRQAKKVTFLELD 75 (183)
T ss_dssp EEECCSSTTTTCEEECC---------CHHHHHHHHHHHHH------HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSC
T ss_pred ceEEEccccCCCEecCCCCCCcCcCcHHHHHHHHHHhhhh------cccceEeecccCccceeeeeeeecceeeEEeecc
Confidence 4799999999999999999899999999999999999874 5788999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHhCCCC-ceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEE
Q 021116 188 PWVVSNVLIPNLEWTGFLD-VSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIV 266 (317)
Q Consensus 188 ~~al~~~ar~N~~~~gl~~-~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~iv 266 (317)
..++ +.+++|++.++..+ ...++..|+.+++... ....+||+||+||||....+++.++.+....+|+++|+|+
T Consensus 76 ~~a~-~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~----~~~~~fDlIFlDPPY~~~~~~~~l~~l~~~~~L~~~~lii 150 (183)
T d2ifta1 76 KTVA-NQLKKNLQTLKCSSEQAEVINQSSLDFLKQP----QNQPHFDVVFLDPPFHFNLAEQAISLLCENNWLKPNALIY 150 (183)
T ss_dssp HHHH-HHHHHHHHHTTCCTTTEEEECSCHHHHTTSC----CSSCCEEEEEECCCSSSCHHHHHHHHHHHTTCEEEEEEEE
T ss_pred cchh-hhHhhHHhhhccccccccccccccccccccc----ccCCcccEEEechhHhhhhHHHHHHHHHHhCCcCCCcEEE
Confidence 9998 99999999998864 5678889988876432 1245799999999999888999999998888999999999
Q ss_pred EEeCCCCCccccCCCeEEEEEeecCceEEEEEe
Q 021116 267 VEYPLRTDMLDTCGCLVKIKDRRFGRTHLAIYG 299 (317)
Q Consensus 267 v~~~~~~~l~~~~~~~~~~~~r~yG~~~l~~~~ 299 (317)
+|++..+.+. ...+|+++++|+||++.+.||+
T Consensus 151 iE~~~~~~~~-~~~~~~~~k~kkyG~t~i~~~~ 182 (183)
T d2ifta1 151 VETEKDKPLI-TPENWTLLKEKTTGIVSYRLYQ 182 (183)
T ss_dssp EEEESSSCCC-CCTTEEEEEEEEETTEEEEEEE
T ss_pred EEecCCCCCC-CCCCcEEEEEEecCCEEEEEec
Confidence 9998776654 4578999999999999999996
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=6e-34 Score=246.36 Aligned_cols=170 Identities=32% Similarity=0.481 Sum_probs=139.3
Q ss_pred eEEEEeeeecceEEecCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCC
Q 021116 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMD 187 (317)
Q Consensus 108 il~ii~G~~~G~~l~~p~~~~~rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin 187 (317)
|+||++|+|+|+++.+|.+ +|||+++|++++||++.... .++.+|||+|||+|.++++|+++|+ +|++||.|
T Consensus 1 ~~ri~~g~~kg~~l~~~~~--~Rpt~~~v~e~lf~~l~~~~-----~~g~~vLDl~~G~G~~~i~a~~~ga-~vv~vD~~ 72 (171)
T d1ws6a1 1 VVRILGGKARGVALKVPAS--ARPSPVRLRKALFDYLRLRY-----PRRGRFLDPFAGSGAVGLEAASEGW-EAVLVEKD 72 (171)
T ss_dssp CEECCSGGGTTCEECCCTT--CCCCCHHHHHHHHHHHHHHC-----TTCCEEEEETCSSCHHHHHHHHTTC-EEEEECCC
T ss_pred CEEEecccccCCEeCCCCC--CCCCcHHHHHHHHHHhhccc-----cCCCeEEEeccccchhhhhhhhccc-hhhhcccC
Confidence 5899999999999999864 79999999999999998652 4688999999999999999999997 69999999
Q ss_pred HHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEE
Q 021116 188 PWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVV 267 (317)
Q Consensus 188 ~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv 267 (317)
++++ +.+++|++.+++.+++ +..|+..++.... ...++||+||+||||.... .+.+..+.+..+|++||++++
T Consensus 73 ~~a~-~~~~~N~~~~~~~~~v--~~~~~d~~~~~~~---~~~~~fD~If~DPPY~~~~-~~~l~~l~~~~ll~~~g~ivi 145 (171)
T d1ws6a1 73 PEAV-RLLKENVRRTGLGARV--VALPVEVFLPEAK---AQGERFTVAFMAPPYAMDL-AALFGELLASGLVEAGGLYVL 145 (171)
T ss_dssp HHHH-HHHHHHHHHHTCCCEE--ECSCHHHHHHHHH---HTTCCEEEEEECCCTTSCT-THHHHHHHHHTCEEEEEEEEE
T ss_pred HHHH-hhhhHHHHhhccccce--eeeehhccccccc---ccCCccceeEEccccccCH-HHHHHHHHHcCCcCCCeEEEE
Confidence 9999 9999999999998755 4455544433221 1347899999999998754 344555555579999999999
Q ss_pred EeCCCCCccccCCCeEEEEEeecCceEEEEEe
Q 021116 268 EYPLRTDMLDTCGCLVKIKDRRFGRTHLAIYG 299 (317)
Q Consensus 268 ~~~~~~~l~~~~~~~~~~~~r~yG~~~l~~~~ 299 (317)
+++....++ +.++|+||.+.++||+
T Consensus 146 e~~~~~~l~-------l~~~r~YG~t~i~~~~ 170 (171)
T d1ws6a1 146 QHPKDLYLP-------LGERRVYGENALTLVE 170 (171)
T ss_dssp EEETTSCCT-------TSEEEEETTEEEEEEE
T ss_pred EecCCCCCC-------cCcEEecCCEEEEEEE
Confidence 998665443 3467999999999986
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.98 E-value=1.9e-32 Score=232.12 Aligned_cols=151 Identities=24% Similarity=0.408 Sum_probs=138.2
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecH
Q 021116 136 VKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRV 215 (317)
Q Consensus 136 v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~ 215 (317)
|++++||+|+.. .++++|||+|||||.+|++|+++|+.+|++||.|+.++ +.+++|++.+++.++++++++|+
T Consensus 1 Vre~~fn~l~~~------~~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~-~~~~~n~~~~~~~~~~~ii~~D~ 73 (152)
T d2esra1 1 VRGAIFNMIGPY------FNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQ-AIIQDNIIMTKAENRFTLLKMEA 73 (152)
T ss_dssp CHHHHHHHHCSC------CCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHH-HHHHHHHHTTTCGGGEEEECSCH
T ss_pred CcHHHHHHHHhh------CCCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhh-hhhhhhhhhcccccchhhhcccc
Confidence 589999999874 67999999999999999999999999999999999998 99999999999999999999999
Q ss_pred HHHHHHHhhhcCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCCCCCccccCCCeEEEEEeecCceEE
Q 021116 216 ETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDRRFGRTHL 295 (317)
Q Consensus 216 ~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~~~l~~~~~~~~~~~~r~yG~~~l 295 (317)
.+++... .++||+||+||||....+...++.+.+.++|+++|++++|++....++.....|.++++|.||++++
T Consensus 74 ~~~l~~~------~~~fDiIf~DPPy~~~~~~~~l~~i~~~~~L~~~g~iiiE~~~~~~~~~~~~~~~i~~~k~yG~t~i 147 (152)
T d2esra1 74 ERAIDCL------TGRFDLVFLDPPYAKETIVATIEALAAKNLLSEQVMVVCETDKTVLLPKEIATLGIWKEKIYGISKV 147 (152)
T ss_dssp HHHHHHB------CSCEEEEEECCSSHHHHHHHHHHHHHHTTCEEEEEEEEEEEETTCCCCSEETTEEEEEEEEETTEEE
T ss_pred ccccccc------ccccceeEechhhccchHHHHHHHHHHCCCcCCCeEEEEEeCCCCCCcccCCcceEEEEEecCCEEE
Confidence 9987653 4789999999999877888899988877899999999999998877776678899999999999999
Q ss_pred EEEe
Q 021116 296 AIYG 299 (317)
Q Consensus 296 ~~~~ 299 (317)
+||-
T Consensus 148 ~~~~ 151 (152)
T d2esra1 148 TVYV 151 (152)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9983
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.79 E-value=9.2e-19 Score=151.13 Aligned_cols=125 Identities=18% Similarity=0.138 Sum_probs=106.1
Q ss_pred CCCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCce
Q 021116 129 VRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVS 208 (317)
Q Consensus 129 ~rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v 208 (317)
+.||.+.++..+.+.+.. .++.+|||+|||+|.++++++..+ .+|+++|+|+.++ +.|++|++.+|+.+++
T Consensus 14 ~~~t~~eir~~il~~l~~-------~~g~~VLDiGcGsG~~s~~lA~~~-~~V~avD~~~~~l-~~a~~n~~~~gl~~~v 84 (186)
T d1l3ia_ 14 PGPTAMEVRCLIMCLAEP-------GKNDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAI-STTEMNLQRHGLGDNV 84 (186)
T ss_dssp CCCCCHHHHHHHHHHHCC-------CTTCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHH-HHHHHHHHHTTCCTTE
T ss_pred CCCChHHHHHHHHHhcCC-------CCCCEEEEEECCeEcccccccccc-eEEEEecCCHHHH-HHHHHHHHHcCCCcce
Confidence 358999999999999876 579999999999999999887664 5899999999999 9999999999998889
Q ss_pred EEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCCCC
Q 021116 209 SIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRT 273 (317)
Q Consensus 209 ~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~~ 273 (317)
+++++|+.+.+. ..+.||+|+++.+.. ..++.++.+.+ .|+|||++++.....+
T Consensus 85 ~~~~gda~~~~~-------~~~~~D~v~~~~~~~--~~~~~~~~~~~--~LkpgG~lvi~~~~~e 138 (186)
T d1l3ia_ 85 TLMEGDAPEALC-------KIPDIDIAVVGGSGG--ELQEILRIIKD--KLKPGGRIIVTAILLE 138 (186)
T ss_dssp EEEESCHHHHHT-------TSCCEEEEEESCCTT--CHHHHHHHHHH--TEEEEEEEEEEECBHH
T ss_pred EEEECchhhccc-------ccCCcCEEEEeCccc--cchHHHHHHHH--HhCcCCEEEEEeeccc
Confidence 999999988753 247899999998653 56677777654 7999999998875443
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.78 E-value=9.1e-19 Score=151.95 Aligned_cols=151 Identities=15% Similarity=0.179 Sum_probs=113.8
Q ss_pred cccccceEEEEeeeecceEE--ecCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCC
Q 021116 102 ERTTHRLLQVLGGKARRKKL--LSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCS 179 (317)
Q Consensus 102 p~~~~~il~ii~G~~~G~~l--~~p~~~~~rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~ 179 (317)
|..... .+.+.+.++|..+ .++.+.+.+...+...+.+.+.+.. .++++|||+|||+|.+++.++..+ .
T Consensus 5 p~~~~~-~~~~~~~~~g~~~~~~t~~gvF~~~~~d~~t~lLi~~l~~-------~~~~~VLDiGcG~G~~~~~la~~~-~ 75 (194)
T d1dusa_ 5 PTTKSD-VKIVEDILRGKKLKFKTDSGVFSYGKVDKGTKILVENVVV-------DKDDDILDLGCGYGVIGIALADEV-K 75 (194)
T ss_dssp CCSCCC-EEEEEEEETTEEEEEEEETTSTTTTSCCHHHHHHHHHCCC-------CTTCEEEEETCTTSHHHHHHGGGS-S
T ss_pred CCCccc-eEEEEEEECCeeEEEEcCCCccCCCCcCHHHHHHHHhCCc-------CCCCeEEEEeecCChhHHHHHhhc-c
Confidence 443333 3566888898844 5567776555555555556666543 468999999999999999887765 5
Q ss_pred EEEEEeCCHHHHHHHHHHhHHHhCCCC-ceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCcc--HHHHHHHHHHc
Q 021116 180 EVHFVEMDPWVVSNVLIPNLEWTGFLD-VSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVD--YEVLMAQISKS 256 (317)
Q Consensus 180 ~V~aVDin~~al~~~ar~N~~~~gl~~-~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~--~~~~l~~L~~~ 256 (317)
+|+++|+|+.++ +.|++|++.+++.+ +++++.+|+.+.+ .+++||+|++||||+... .+.+++.+.
T Consensus 76 ~v~~iD~s~~~i-~~a~~n~~~~~l~~~~i~~~~~d~~~~~--------~~~~fD~Ii~~~p~~~~~~~~~~~l~~~~-- 144 (194)
T d1dusa_ 76 STTMADINRRAI-KLAKENIKLNNLDNYDIRVVHSDLYENV--------KDRKYNKIITNPPIRAGKEVLHRIIEEGK-- 144 (194)
T ss_dssp EEEEEESCHHHH-HHHHHHHHHTTCTTSCEEEEECSTTTTC--------TTSCEEEEEECCCSTTCHHHHHHHHHHHH--
T ss_pred ccceeeeccccc-hhHHHHHHHhCCccceEEEEEcchhhhh--------ccCCceEEEEcccEEecchhhhhHHHHHH--
Confidence 799999999999 99999999999875 5899999987643 247899999999987542 344555554
Q ss_pred CCcCCCeEEEEEeCCC
Q 021116 257 ALVGKDSFIVVEYPLR 272 (317)
Q Consensus 257 ~lLkpgG~ivv~~~~~ 272 (317)
++|+|||++++.....
T Consensus 145 ~~LkpgG~l~i~~~~~ 160 (194)
T d1dusa_ 145 ELLKDNGEIWVVIQTK 160 (194)
T ss_dssp HHEEEEEEEEEEEEST
T ss_pred HhcCcCcEEEEEEeCc
Confidence 5899999998876544
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.77 E-value=1.9e-18 Score=159.03 Aligned_cols=141 Identities=21% Similarity=0.215 Sum_probs=110.6
Q ss_pred eecceEEecCCCC-CCCCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHc-CCCEEEEEeCCHHHHH
Q 021116 115 KARRKKLLSPKGM-DVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVS 192 (317)
Q Consensus 115 ~~~G~~l~~p~~~-~~rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~-Ga~~V~aVDin~~al~ 192 (317)
.|+|.++.+.++. .+||.|+.+.+.+.+... ..+.+|||+|||||.+++.+++. ...+|+++|+++.|+
T Consensus 75 ~F~~~~~~v~~~VlIPRpeTE~lv~~~l~~~~--------~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al- 145 (274)
T d2b3ta1 75 EFWSLPLFVSPATLIPRPDTECLVEQALARLP--------EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAV- 145 (274)
T ss_dssp EETTEEEECCTTSCCCCTTHHHHHHHHHHHSC--------SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHH-
T ss_pred EEeeeEEEEeccccccccchhhhhhhHhhhhc--------ccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHH-
Confidence 5789999998877 589999988887766543 24678999999999999987664 456899999999999
Q ss_pred HHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCcc-H------------------H---HHH
Q 021116 193 NVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVD-Y------------------E---VLM 250 (317)
Q Consensus 193 ~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~-~------------------~---~~l 250 (317)
+.|++|++.+++. +++++++|+.+.+ .+.+||+|++||||.... . . ..+
T Consensus 146 ~~A~~Na~~~~~~-~v~~~~~d~~~~~--------~~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~ 216 (274)
T d2b3ta1 146 SLAQRNAQHLAIK-NIHILQSDWFSAL--------AGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADI 216 (274)
T ss_dssp HHHHHHHHHHTCC-SEEEECCSTTGGG--------TTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHH
T ss_pred hHHHHHHHHhCcc-cceeeeccccccc--------CCCceeEEEecchhhhhhhhcccccccccchhhhcccccccchHH
Confidence 9999999999995 5999999987754 246899999999995321 0 0 122
Q ss_pred HHHH--HcCCcCCCeEEEEEeCCCC
Q 021116 251 AQIS--KSALVGKDSFIVVEYPLRT 273 (317)
Q Consensus 251 ~~L~--~~~lLkpgG~ivv~~~~~~ 273 (317)
..+. ...+|++||.+++|....+
T Consensus 217 ~~i~~~a~~~L~~~G~l~lEig~~q 241 (274)
T d2b3ta1 217 VHIIEQSRNALVSGGFLLLEHGWQQ 241 (274)
T ss_dssp HHHHHHHGGGEEEEEEEEEECCSSC
T ss_pred HHHHHHHHHhcCCCCEEEEEECchH
Confidence 2222 2468999999999987654
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.76 E-value=4.6e-18 Score=159.50 Aligned_cols=112 Identities=21% Similarity=0.216 Sum_probs=93.5
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccE
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDl 234 (317)
++++|||+|||+|.+++.+++.|+.+|+++|+|+.++ +.+++|++.||+.++++++++|+.+++..+. ..+.+||+
T Consensus 145 ~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al-~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~---~~~~~fD~ 220 (324)
T d2as0a2 145 PGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAI-ETAKENAKLNGVEDRMKFIVGSAFEEMEKLQ---KKGEKFDI 220 (324)
T ss_dssp TTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHH-HHHHHHHHHTTCGGGEEEEESCHHHHHHHHH---HTTCCEEE
T ss_pred CCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHH-HHHHHHHHHcCCCccceeeechhhhhhHHHH---hccCCCCc
Confidence 5899999999999999999999998999999999999 9999999999998889999999999876543 23578999
Q ss_pred EEECCCCCCc----------cHHHHHHHHHHcCCcCCCeEEEEEeCCC
Q 021116 235 MSVTPPYTAV----------DYEVLMAQISKSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 235 V~~dPPy~~~----------~~~~~l~~L~~~~lLkpgG~ivv~~~~~ 272 (317)
|++|||+... .|.+++... .++|+|||++++...+.
T Consensus 221 Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a--~~ll~pGG~lv~~s~s~ 266 (324)
T d2as0a2 221 VVLDPPAFVQHEKDLKAGLRAYFNVNFAG--LNLVKDGGILVTCSCSQ 266 (324)
T ss_dssp EEECCCCSCSSGGGHHHHHHHHHHHHHHH--HTTEEEEEEEEEEECCT
T ss_pred hhcCCccccCCHHHHHHHHHHHHHHHHHH--HHHcCCCcEEEEEeCCc
Confidence 9999997532 234444443 36999999988766543
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=99.75 E-value=8.6e-18 Score=157.52 Aligned_cols=113 Identities=17% Similarity=0.237 Sum_probs=93.3
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCC-CceEEEEecHHHHHHHHhhhcCCCCCc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFL-DVSSIHTVRVETFLERAEQFVGKDGPF 232 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~-~~v~ii~gD~~~~l~~~~~~~~~~~~f 232 (317)
.++++|||+|||||.+++.|+..|+.+|++||+|+.++ +.+++|++.||+. ++++++++|+.++++...+ ...+|
T Consensus 143 ~~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~-~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~---~~~~f 218 (317)
T d2b78a2 143 AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSR-ALSLAHFEANHLDMANHQLVVMDVFDYFKYARR---HHLTY 218 (317)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHH-HHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHH---TTCCE
T ss_pred hCCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHH-HHHHHHHHHhcccCcceEEEEccHHHHHHHHHh---hcCCC
Confidence 35899999999999999999998999999999999999 9999999999996 5799999999999876532 35689
Q ss_pred cEEEECCCCCCc----------cHHHHHHHHHHcCCcCCCeEEEEEeCCC
Q 021116 233 DYMSVTPPYTAV----------DYEVLMAQISKSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 233 DlV~~dPPy~~~----------~~~~~l~~L~~~~lLkpgG~ivv~~~~~ 272 (317)
|+||+|||.... .|.+++.... ++|+|||++++.+.+.
T Consensus 219 D~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~--~ll~pgG~l~~~scs~ 266 (317)
T d2b78a2 219 DIIIIDPPSFARNKKEVFSVSKDYHKLIRQGL--EILSENGLIIASTNAA 266 (317)
T ss_dssp EEEEECCCCC-----CCCCHHHHHHHHHHHHH--HTEEEEEEEEEEECCT
T ss_pred CEEEEcChhhccchhHHHHHHHHHHHHHHHHH--HHcCCCCEEEEEeCCc
Confidence 999999995321 2445555443 5899999999877643
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=99.75 E-value=1.9e-17 Score=152.06 Aligned_cols=144 Identities=15% Similarity=0.192 Sum_probs=116.5
Q ss_pred eecceEEecCCCC-CCCCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHH
Q 021116 115 KARRKKLLSPKGM-DVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSN 193 (317)
Q Consensus 115 ~~~G~~l~~p~~~-~~rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~ 193 (317)
.|+|.++.+.++. .+||.|+.+.+.+.+..... ...+++|+|||+|.+++.++.....+|+++|+|+.|+ +
T Consensus 76 ~F~~~~f~v~~~vlIPRpeTE~lv~~~~~~~~~~-------~~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al-~ 147 (271)
T d1nv8a_ 76 EFMGLSFLVEEGVFVPRPETEELVELALELIRKY-------GIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAV-E 147 (271)
T ss_dssp EETTEEEECCTTSCCCCTTHHHHHHHHHHHHHHH-------TCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHH-H
T ss_pred EEeeeEEEEecCccCchhhhhhhhhhhhhhhccc-------cccEEEEeeeeeehhhhhhhhcccceeeechhhhhHH-H
Confidence 5789999998776 58999999999888877653 3568999999999999988777667899999999999 9
Q ss_pred HHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCcc--------HH------------HHHHHH
Q 021116 194 VLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVD--------YE------------VLMAQI 253 (317)
Q Consensus 194 ~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~--------~~------------~~l~~L 253 (317)
+|++|++.+++.+++.++.+|+.+..... .++||+|++||||.... ++ +.+..+
T Consensus 148 ~A~~Na~~~~~~~~~~i~~~~~~~~~~~~------~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i 221 (271)
T d1nv8a_ 148 IARKNAERHGVSDRFFVRKGEFLEPFKEK------FASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREF 221 (271)
T ss_dssp HHHHHHHHTTCTTSEEEEESSTTGGGGGG------TTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHH
T ss_pred HHHHHHHHcCCCceeEEeecccccccccc------cCcccEEEEcccccCcccccceeeeeccccccccccchHHHHHHH
Confidence 99999999999998999999987765322 36899999999996421 11 223333
Q ss_pred HHcCCcCCCeEEEEEeCCCC
Q 021116 254 SKSALVGKDSFIVVEYPLRT 273 (317)
Q Consensus 254 ~~~~lLkpgG~ivv~~~~~~ 273 (317)
. .++|++||++++|+...+
T Consensus 222 ~-~~~L~~~G~l~~Eig~~Q 240 (271)
T d1nv8a_ 222 F-GRYDTSGKIVLMEIGEDQ 240 (271)
T ss_dssp H-HHCCCTTCEEEEECCTTC
T ss_pred H-HHhcCCCCEEEEEECHHH
Confidence 3 258999999999998654
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.74 E-value=2.4e-17 Score=153.99 Aligned_cols=141 Identities=18% Similarity=0.172 Sum_probs=102.2
Q ss_pred cceEEecCCC----CCCCCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHH
Q 021116 117 RRKKLLSPKG----MDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVS 192 (317)
Q Consensus 117 ~G~~l~~p~~----~~~rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~ 192 (317)
.|.++.+... .+..+.....++.+.+.+... .++.+|||+|||||.+++.+++.|+ +|++||.++.++
T Consensus 96 ~gl~f~v~~~~~~~tG~f~dqr~nr~~~~~~~~~~------~~~~rVLdlf~~tG~~sl~aa~~GA-~V~~VD~s~~al- 167 (309)
T d2igta1 96 LGVEFLGRFTAFRHVGVFPEQIVHWEWLKNAVETA------DRPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAI- 167 (309)
T ss_dssp TTEEEEEECCSSSCCSCCGGGHHHHHHHHHHHHHS------SSCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHH-
T ss_pred eEEEEEEeccCCCccccccchhHHHHHHHHHHhhc------cCCCeEEEecCCCcHHHHHHHhCCC-eEEEEeChHHHH-
Confidence 4555544322 234556666677766666553 4688999999999999999988887 799999999999
Q ss_pred HHHHHhHHHhCCCC-ceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCC-Cc------cHHHHHHHHH--HcCCcCCC
Q 021116 193 NVLIPNLEWTGFLD-VSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYT-AV------DYEVLMAQIS--KSALVGKD 262 (317)
Q Consensus 193 ~~ar~N~~~~gl~~-~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~-~~------~~~~~l~~L~--~~~lLkpg 262 (317)
+.|++|++.||+.+ +++++++|+.+++..... ...+||+||+|||.. .. ..++.+..+. ...+|+||
T Consensus 168 ~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~---~~~~fD~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~ 244 (309)
T d2igta1 168 GWAKENQVLAGLEQAPIRWICEDAMKFIQREER---RGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPK 244 (309)
T ss_dssp HHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHH---HTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTT
T ss_pred HHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhh---cCCCCCEEEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999975 689999999999876531 247899999999953 11 1223222221 12589998
Q ss_pred eEEEEE
Q 021116 263 SFIVVE 268 (317)
Q Consensus 263 G~ivv~ 268 (317)
|.+++.
T Consensus 245 g~~ll~ 250 (309)
T d2igta1 245 ALGLVL 250 (309)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 864433
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.71 E-value=2.6e-17 Score=144.49 Aligned_cols=97 Identities=26% Similarity=0.258 Sum_probs=80.5
Q ss_pred CCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceE
Q 021116 130 RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSS 209 (317)
Q Consensus 130 rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ 209 (317)
.+|...++..+...+...+ +.+|++|||+|||||.++++++++|+.+|++||+|+.++ +.+++|++.++.. .+
T Consensus 25 y~Tp~~~a~~~~~~~~~~~----dl~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~-~~a~~N~~~~~~~--~~ 97 (201)
T d1wy7a1 25 YRTPGNAASELLWLAYSLG----DIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAV-DVLIENLGEFKGK--FK 97 (201)
T ss_dssp CCCCHHHHHHHHHHHHHTT----SSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHH-HHHHHHTGGGTTS--EE
T ss_pred CCCCHHHHHHHHHHHHhcC----CCCCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHH-HHHHHHHHHcCCC--ce
Confidence 3566666666655444332 357899999999999999999999988999999999999 9999999998864 78
Q ss_pred EEEecHHHHHHHHhhhcCCCCCccEEEECCCCCC
Q 021116 210 IHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTA 243 (317)
Q Consensus 210 ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~ 243 (317)
++.+|+.++ .++||+||+||||+.
T Consensus 98 ~~~~d~~~~----------~~~fD~Vi~nPP~~~ 121 (201)
T d1wy7a1 98 VFIGDVSEF----------NSRVDIVIMNPPFGS 121 (201)
T ss_dssp EEESCGGGC----------CCCCSEEEECCCCSS
T ss_pred EEECchhhh----------CCcCcEEEEcCcccc
Confidence 999998764 378999999999975
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=99.70 E-value=4.1e-17 Score=152.73 Aligned_cols=110 Identities=21% Similarity=0.252 Sum_probs=88.3
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
.++++|||+|||||.+++.++. |+.+|+++|+|+.++ +.|++|++.||+. +++++++|+.+++..+. ...++||
T Consensus 144 ~~g~rVLDl~~gtG~~s~~~a~-g~~~V~~vD~s~~al-~~a~~n~~~ngl~-~~~~i~~d~~~~~~~~~---~~~~~fD 217 (318)
T d1wxxa2 144 FRGERALDVFSYAGGFALHLAL-GFREVVAVDSSAEAL-RRAEENARLNGLG-NVRVLEANAFDLLRRLE---KEGERFD 217 (318)
T ss_dssp CCEEEEEEETCTTTHHHHHHHH-HEEEEEEEESCHHHH-HHHHHHHHHTTCT-TEEEEESCHHHHHHHHH---HTTCCEE
T ss_pred hCCCeeeccCCCCcHHHHHHHh-cCCcEEeecchHHHH-HHHHHHHHHcCCC-CcceeeccHHHHhhhhH---hhhcCCC
Confidence 4689999999999999997764 567899999999999 9999999999996 48999999999876653 2357899
Q ss_pred EEEECCCCCCc---c-------HHHHHHHHHHcCCcCCCeEEEEEeCC
Q 021116 234 YMSVTPPYTAV---D-------YEVLMAQISKSALVGKDSFIVVEYPL 271 (317)
Q Consensus 234 lV~~dPPy~~~---~-------~~~~l~~L~~~~lLkpgG~ivv~~~~ 271 (317)
+|++|||+... . |.+++.... ++|+|||++++...+
T Consensus 218 ~Vi~DpP~~~~~~~~~~~~~~~~~~l~~~a~--~lLkpGG~Lv~~scs 263 (318)
T d1wxxa2 218 LVVLDPPAFAKGKKDVERAYRAYKEVNLRAI--KLLKEGGILATASCS 263 (318)
T ss_dssp EEEECCCCSCCSTTSHHHHHHHHHHHHHHHH--HTEEEEEEEEEEECC
T ss_pred EEEEcCCccccchHHHHHHHHHHHHHHHHHH--HHcCCCCEEEEEeCC
Confidence 99999996432 1 233443333 589999999876554
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.67 E-value=7.6e-17 Score=146.66 Aligned_cols=143 Identities=19% Similarity=0.147 Sum_probs=104.5
Q ss_pred CCCCCCCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCC
Q 021116 125 KGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGF 204 (317)
Q Consensus 125 ~~~~~rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl 204 (317)
.|.+++||+..+.+.+-... .++++|||+|||||.+++.+++.|+ +|+++|+|+.++ +.|++|++.+|+
T Consensus 99 FGTG~H~TT~l~l~~l~~~~---------~~g~~VLDiGcGsG~l~i~aa~~g~-~V~gvDis~~av-~~A~~na~~n~~ 167 (254)
T d2nxca1 99 FGTGHHETTRLALKALARHL---------RPGDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVL-PQAEANAKRNGV 167 (254)
T ss_dssp ---CCSHHHHHHHHHHHHHC---------CTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCGGGH-HHHHHHHHHTTC
T ss_pred cCccccchhhHHHHHHHhhc---------CccCEEEEcccchhHHHHHHHhcCC-EEEEEECChHHH-HHHHHHHHHcCC
Confidence 44578999998887775443 4689999999999999998888886 799999999999 999999999998
Q ss_pred CCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCCCCCccc-----cC
Q 021116 205 LDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLD-----TC 279 (317)
Q Consensus 205 ~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~~~l~~-----~~ 279 (317)
. ++++++|+.+.+. .++||+|+++.. .....++++.+. +.|+|||+++++.-..++... ..
T Consensus 168 ~--~~~~~~d~~~~~~--------~~~fD~V~ani~--~~~l~~l~~~~~--~~LkpGG~lilSgil~~~~~~v~~~~~~ 233 (254)
T d2nxca1 168 R--PRFLEGSLEAALP--------FGPFDLLVANLY--AELHAALAPRYR--EALVPGGRALLTGILKDRAPLVREAMAG 233 (254)
T ss_dssp C--CEEEESCHHHHGG--------GCCEEEEEEECC--HHHHHHHHHHHH--HHEEEEEEEEEEEEEGGGHHHHHHHHHH
T ss_pred c--eeEEecccccccc--------ccccchhhhccc--cccHHHHHHHHH--HhcCCCcEEEEEecchhhHHHHHHHHHH
Confidence 5 4689999876532 378999999842 223455555554 479999999986432222111 13
Q ss_pred CCeEEEEEeecCc
Q 021116 280 GCLVKIKDRRFGR 292 (317)
Q Consensus 280 ~~~~~~~~r~yG~ 292 (317)
.||.+++...-|+
T Consensus 234 ~Gf~~~~~~~~~~ 246 (254)
T d2nxca1 234 AGFRPLEEAAEGE 246 (254)
T ss_dssp TTCEEEEEEEETT
T ss_pred CCCEEEEEEEECC
Confidence 5677766554443
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.66 E-value=1.8e-16 Score=144.53 Aligned_cols=102 Identities=15% Similarity=0.218 Sum_probs=84.5
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
.++.+|||+|||+|.+++.++++|+.+|+++|+|+.++ +.+++|++.||++++++++++|+.++. ....||
T Consensus 106 ~~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~-~~~~~N~~~n~l~~~v~~~~~D~~~~~--------~~~~~D 176 (260)
T d2frna1 106 KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTF-KFLVENIHLNKVEDRMSAYNMDNRDFP--------GENIAD 176 (260)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHH-HHHHHHHHHTTCTTTEEEECSCTTTCC--------CCSCEE
T ss_pred CCccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHH-HHHHHHHHHhCCCceEEEEEcchHHhc--------cCCCCC
Confidence 36899999999999999999998877999999999999 999999999999999999999998764 246799
Q ss_pred EEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 234 YMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 234 lV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
.|++|||..... .++... ++|++||++.+..
T Consensus 177 ~Ii~~~p~~~~~---~l~~a~--~~l~~gG~lh~~~ 207 (260)
T d2frna1 177 RILMGYVVRTHE---FIPKAL--SIAKDGAIIHYHN 207 (260)
T ss_dssp EEEECCCSSGGG---GHHHHH--HHEEEEEEEEEEE
T ss_pred EEEECCCCchHH---HHHHHH--hhcCCCCEEEEEe
Confidence 999998864322 222222 2689999986643
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.64 E-value=3.6e-16 Score=137.22 Aligned_cols=93 Identities=16% Similarity=0.241 Sum_probs=73.9
Q ss_pred CCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceE
Q 021116 130 RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSS 209 (317)
Q Consensus 130 rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ 209 (317)
.+|...++..++..+...+ +..|++|||+|||||.++++++.+|+.+|++||+|+.++ +.|++|++ +++
T Consensus 27 y~T~~~~a~~~~~~~~~~~----dl~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~-~~ar~N~~------~~~ 95 (197)
T d1ne2a_ 27 YPTDASTAAYFLIEIYNDG----NIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAI-ETAKRNCG------GVN 95 (197)
T ss_dssp CCCCHHHHHHHHHHHHHHT----SSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHH-HHHHHHCT------TSE
T ss_pred CCCCHHHHHHHHHHHHHcC----CCCCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHH-HHHHHccc------ccc
Confidence 4565556655554443332 267999999999999999999999998999999999999 99999974 367
Q ss_pred EEEecHHHHHHHHhhhcCCCCCccEEEECCCCCC
Q 021116 210 IHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTA 243 (317)
Q Consensus 210 ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~ 243 (317)
++++|+.+. .++||+||+||||+.
T Consensus 96 ~~~~D~~~l----------~~~fD~Vi~NPPfg~ 119 (197)
T d1ne2a_ 96 FMVADVSEI----------SGKYDTWIMNPPFGS 119 (197)
T ss_dssp EEECCGGGC----------CCCEEEEEECCCC--
T ss_pred EEEEehhhc----------CCcceEEEeCcccch
Confidence 899998763 478999999999964
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=99.61 E-value=2.4e-15 Score=141.28 Aligned_cols=140 Identities=19% Similarity=0.155 Sum_probs=107.3
Q ss_pred cceEEecCCCCCCCCChH---HHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHH
Q 021116 117 RRKKLLSPKGMDVRPMME---VVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSN 193 (317)
Q Consensus 117 ~G~~l~~p~~~~~rpt~~---~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~ 193 (317)
.|.++..+++.++++... .+.+.+.+++.. .++.+|||+|||+|.+++.+++. +++|++||.++.++ +
T Consensus 178 ~g~~~~i~p~sFfQ~N~~~~e~l~~~v~~~~~~-------~~~~~vlDLycG~G~fsl~La~~-~~~V~gvE~~~~ai-~ 248 (358)
T d1uwva2 178 NGLRLTFSPRDFIQVNAGVNQKMVARALEWLDV-------QPEDRVLDLFCGMGNFTLPLATQ-AASVVGVEGVPALV-E 248 (358)
T ss_dssp TTEEEECCSSSCCCSBHHHHHHHHHHHHHHHTC-------CTTCEEEEESCTTTTTHHHHHTT-SSEEEEEESCHHHH-H
T ss_pred CCEEEEECCchhhccchhhhhHHHHHHHHhhcc-------CCCceEEEecccccccchhcccc-ccEEEeccCcHHHH-H
Confidence 577888888888777653 344444455543 35789999999999999977665 56899999999999 9
Q ss_pred HHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCCCC
Q 021116 194 VLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRT 273 (317)
Q Consensus 194 ~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~~ 273 (317)
.|++|++.||+.+ ++++.+|+.+.+... ......||+|++|||+.. . .+.++.+.+ +++.-++|++|+..+
T Consensus 249 ~A~~na~~n~i~n-~~~~~~~~~~~~~~~---~~~~~~~d~vilDPPR~G-~-~~~~~~l~~---~~~~~ivYVSCnp~T 319 (358)
T d1uwva2 249 KGQQNARLNGLQN-VTFYHENLEEDVTKQ---PWAKNGFDKVLLDPARAG-A-AGVMQQIIK---LEPIRIVYVSCNPAT 319 (358)
T ss_dssp HHHHHHHHTTCCS-EEEEECCTTSCCSSS---GGGTTCCSEEEECCCTTC-C-HHHHHHHHH---HCCSEEEEEESCHHH
T ss_pred HHHHhHHhccccc-ceeeecchhhhhhhh---hhhhccCceEEeCCCCcc-H-HHHHHHHHH---cCCCEEEEEeCCHHH
Confidence 9999999999975 899999988765322 112367999999999853 3 357777764 578899999999664
Q ss_pred C
Q 021116 274 D 274 (317)
Q Consensus 274 ~ 274 (317)
-
T Consensus 320 l 320 (358)
T d1uwva2 320 L 320 (358)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.61 E-value=1.6e-15 Score=134.95 Aligned_cols=123 Identities=13% Similarity=0.090 Sum_probs=97.9
Q ss_pred CCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceE
Q 021116 130 RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSS 209 (317)
Q Consensus 130 rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ 209 (317)
.|.++.....+.+.+.. .++.+|||+|||+|.++..++++...+|++||+|+.++ +.|++|++..|+.++++
T Consensus 15 ~p~~~~~~~~l~~~~~l-------~pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~-~~ar~~~~~~gl~~~v~ 86 (245)
T d1nkva_ 15 NPFTEEKYATLGRVLRM-------KPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFT-AQAKRRAEELGVSERVH 86 (245)
T ss_dssp SSCCHHHHHHHHHHTCC-------CTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHH-HHHHHHHHHTTCTTTEE
T ss_pred CCCCHHHHHHHHHHcCC-------CCCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchh-hHHHHHHHHhhccccch
Confidence 56667666667666654 46899999999999999987765334899999999999 99999999999999999
Q ss_pred EEEecHHHHHHHHhhhcCCCCCccEEEECC-CCCCccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 210 IHTVRVETFLERAEQFVGKDGPFDYMSVTP-PYTAVDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 210 ii~gD~~~~l~~~~~~~~~~~~fDlV~~dP-Py~~~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
++.+|+.+.. .+++||+|++-- -++..+....++.+. ++|+|||++++...
T Consensus 87 ~~~~d~~~~~--------~~~~fD~v~~~~~~~~~~d~~~~l~~~~--r~LkPGG~l~i~~~ 138 (245)
T d1nkva_ 87 FIHNDAAGYV--------ANEKCDVAACVGATWIAGGFAGAEELLA--QSLKPGGIMLIGEP 138 (245)
T ss_dssp EEESCCTTCC--------CSSCEEEEEEESCGGGTSSSHHHHHHHT--TSEEEEEEEEEEEE
T ss_pred hhhhHHhhcc--------ccCceeEEEEEehhhccCCHHHHHHHHH--HHcCcCcEEEEEec
Confidence 9999988752 257899999742 233345677777765 69999999998754
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.53 E-value=3.2e-14 Score=124.11 Aligned_cols=104 Identities=13% Similarity=0.049 Sum_probs=84.1
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
.++.+|||+|||+|.++..++..|+ +|+++|+|+.++ +.|+++++..+.. +++++++|+.+. +..+++||
T Consensus 14 ~~~~rVLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~i-~~A~~~~~~~~~~-~i~~~~~d~~~l-------~~~~~~fD 83 (231)
T d1vl5a_ 14 KGNEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDIL-KVARAFIEGNGHQ-QVEYVQGDAEQM-------PFTDERFH 83 (231)
T ss_dssp CSCCEEEEETCTTCHHHHHHGGGSS-EEEEEESCHHHH-HHHHHHHHHTTCC-SEEEEECCC-CC-------CSCTTCEE
T ss_pred CCcCEEEEecccCcHHHHHHHHhCC-EEEEEECCHHHH-hhhhhcccccccc-cccccccccccc-------cccccccc
Confidence 4679999999999999998888875 799999999999 9999999998875 599999998764 23467899
Q ss_pred EEEECCCC-CCccHHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 234 YMSVTPPY-TAVDYEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 234 lV~~dPPy-~~~~~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
+|++.--+ +..+.+..++.+. ++|+|||++++..
T Consensus 84 ~v~~~~~l~~~~d~~~~l~~~~--r~LkpgG~l~i~~ 118 (231)
T d1vl5a_ 84 IVTCRIAAHHFPNPASFVSEAY--RVLKKGGQLLLVD 118 (231)
T ss_dssp EEEEESCGGGCSCHHHHHHHHH--HHEEEEEEEEEEE
T ss_pred cccccccccccCCHHHHHHHHH--HhcCCCcEEEEEe
Confidence 99975322 2346677777775 5899999988754
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.52 E-value=3.2e-14 Score=125.39 Aligned_cols=103 Identities=16% Similarity=0.114 Sum_probs=85.1
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
.++.+|||+|||+|.++..+++++. +|++||+|+.++ +.|+++++.+++. ++.++++|+.++ +..+++||
T Consensus 15 ~~~~rILDiGcGtG~~~~~la~~~~-~v~gvD~S~~~l-~~A~~~~~~~~~~-~~~~~~~d~~~~-------~~~~~~fD 84 (234)
T d1xxla_ 15 RAEHRVLDIGAGAGHTALAFSPYVQ-ECIGVDATKEMV-EVASSFAQEKGVE-NVRFQQGTAESL-------PFPDDSFD 84 (234)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHH-HHHHHHHHHHTCC-SEEEEECBTTBC-------CSCTTCEE
T ss_pred CCCCEEEEeCCcCcHHHHHHHHhCC-eEEEEeCChhhh-hhhhhhhcccccc-cccccccccccc-------cccccccc
Confidence 4789999999999999999988874 799999999999 9999999999985 499999998764 23468999
Q ss_pred EEEECCCC-CCccHHHHHHHHHHcCCcCCCeEEEEE
Q 021116 234 YMSVTPPY-TAVDYEVLMAQISKSALVGKDSFIVVE 268 (317)
Q Consensus 234 lV~~dPPy-~~~~~~~~l~~L~~~~lLkpgG~ivv~ 268 (317)
+|++.--. +..+....++.+. ++|+|||++++.
T Consensus 85 ~v~~~~~l~~~~d~~~~l~~~~--r~LkpgG~~~~~ 118 (234)
T d1xxla_ 85 IITCRYAAHHFSDVRKAVREVA--RVLKQDGRFLLV 118 (234)
T ss_dssp EEEEESCGGGCSCHHHHHHHHH--HHEEEEEEEEEE
T ss_pred eeeeeceeecccCHHHHHHHHH--HeeCCCcEEEEE
Confidence 99985432 2235677777776 589999998875
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.50 E-value=8.3e-14 Score=126.31 Aligned_cols=122 Identities=12% Similarity=0.126 Sum_probs=93.5
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecH
Q 021116 136 VKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRV 215 (317)
Q Consensus 136 v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~ 215 (317)
..+.+.+.|..... ..++.+|||+|||+|.+++.++++...+|++||+++.++ +.|+++.+..|+.++++++++|+
T Consensus 51 ~~~~~~~~l~~~~~---l~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~i-~~a~~~~~~~gl~~~v~~~~~d~ 126 (282)
T d2o57a1 51 TDEWLASELAMTGV---LQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQN-KRNEEYNNQAGLADNITVKYGSF 126 (282)
T ss_dssp HHHHHHHHHHHTTC---CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHH-HHHHHHHHHHTCTTTEEEEECCT
T ss_pred HHHHHHHHHHHhcC---CCCCCEEEEeCCCCcHHHhhhhccCCcEEEEEeccchhh-hhhhccccccccccccccccccc
Confidence 34445555543321 146899999999999999988776334799999999999 99999999999998999999998
Q ss_pred HHHHHHHhhhcCCCCCccEEEECCCC-CCccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 216 ETFLERAEQFVGKDGPFDYMSVTPPY-TAVDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 216 ~~~l~~~~~~~~~~~~fDlV~~dPPy-~~~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
.++ +..+++||+|++.--+ +..+....++.+. ++|+|||++++...
T Consensus 127 ~~l-------~~~~~sfD~V~~~~~l~h~~d~~~~l~~~~--~~LkpgG~l~~~~~ 173 (282)
T d2o57a1 127 LEI-------PCEDNSYDFIWSQDAFLHSPDKLKVFQECA--RVLKPRGVMAITDP 173 (282)
T ss_dssp TSC-------SSCTTCEEEEEEESCGGGCSCHHHHHHHHH--HHEEEEEEEEEEEE
T ss_pred ccc-------cccccccchhhccchhhhccCHHHHHHHHH--HhcCCCcEEEEEEe
Confidence 764 2346789999975432 3446677777765 58999999988654
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=4.6e-14 Score=127.55 Aligned_cols=125 Identities=15% Similarity=0.062 Sum_probs=85.4
Q ss_pred eecceEEecCCCC-CCCCChH-HHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHc-CCCEEEEEeCCHHHH
Q 021116 115 KARRKKLLSPKGM-DVRPMME-VVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVV 191 (317)
Q Consensus 115 ~~~G~~l~~p~~~-~~rpt~~-~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~-Ga~~V~aVDin~~al 191 (317)
.+.|..+.++.+. .+||.+. .+.+.+.+.+.... .......++||+|||+|.+++.++++ ...+++++|++++++
T Consensus 21 ~f~gl~~~v~~~~LiPr~~~r~~~~~~i~~l~~~~~--~~~~~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al 98 (250)
T d2h00a1 21 EDFGLSIDIPLERLIPTVPLRLNYIHWVEDLIGHQD--SDKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCF 98 (250)
T ss_dssp HHHCCCCCCCTTSCCCCHHHHHHHHHHHHHHHCCCC--GGGCCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHH
T ss_pred HHcCceEEeCCCeecCCCCCHHHHHHHHHHHhhhhc--cCccccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHH
Confidence 3557777787766 4565443 34444544443210 00123469999999999999986654 234799999999999
Q ss_pred HHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCC
Q 021116 192 SNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTA 243 (317)
Q Consensus 192 ~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~ 243 (317)
+.|++|++.|++.+++.+++.+....+.... .....++||+|++||||..
T Consensus 99 -~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~-~~~~~~~fD~ivsNPPY~~ 148 (250)
T d2h00a1 99 -NYAKKNVEQNNLSDLIKVVKVPQKTLLMDAL-KEESEIIYDFCMCNPPFFA 148 (250)
T ss_dssp -HHHHHHHHHTTCTTTEEEEECCTTCSSTTTS-TTCCSCCBSEEEECCCCC-
T ss_pred -HHHHHHHHHhCCCcceeeeeeccHHhhhhhh-hhcccCceeEEEecCcccc
Confidence 9999999999999999998876544321100 0112457999999999974
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=5.6e-14 Score=129.71 Aligned_cols=103 Identities=13% Similarity=0.061 Sum_probs=82.2
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
.++++|||+|||+|.+++.|++.|+.+|+++|.++.+. .++++++.++..++++++++|+.++. ....+||
T Consensus 34 ~~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~--~a~~~~~~~~~~~~i~~~~~~~~~l~-------~~~~~~D 104 (311)
T d2fyta1 34 FKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILY--QAMDIIRLNKLEDTITLIKGKIEEVH-------LPVEKVD 104 (311)
T ss_dssp TTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHH--HHHHHHHHTTCTTTEEEEESCTTTSC-------CSCSCEE
T ss_pred CCcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHH--HHHHHHHHhCCCccceEEEeeHHHhc-------Cccccce
Confidence 47899999999999999999999999999999999875 46777788888889999999988752 2347899
Q ss_pred EEEECCCCCCcc----HHHHHHHHHHcCCcCCCeEEEE
Q 021116 234 YMSVTPPYTAVD----YEVLMAQISKSALVGKDSFIVV 267 (317)
Q Consensus 234 lV~~dPPy~~~~----~~~~l~~L~~~~lLkpgG~ivv 267 (317)
+|++++...... .+.++... .++|+|||+++.
T Consensus 105 ~Ivse~~~~~~~~e~~~~~~~~a~--~~~Lkp~G~iip 140 (311)
T d2fyta1 105 VIISEWMGYFLLFESMLDSVLYAK--NKYLAKGGSVYP 140 (311)
T ss_dssp EEEECCCBTTBTTTCHHHHHHHHH--HHHEEEEEEEES
T ss_pred EEEEeeeeeecccccccHHHHHHH--HhcCCCCcEEec
Confidence 999987754433 33334333 258999999874
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.45 E-value=7.6e-14 Score=129.95 Aligned_cols=102 Identities=17% Similarity=0.140 Sum_probs=83.3
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
.++++|||+|||+|.+++.|++.|+.+|+++|.++ ++ +.|+++++.++..++++++++|+.+.. ...++||
T Consensus 37 ~~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~-~~-~~a~~~~~~~~~~~~i~~i~~~~~~l~-------~~~~~~D 107 (328)
T d1g6q1_ 37 FKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-II-EMAKELVELNGFSDKITLLRGKLEDVH-------LPFPKVD 107 (328)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HH-HHHHHHHHHTTCTTTEEEEESCTTTSC-------CSSSCEE
T ss_pred CCcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCH-HH-HHHHHHHHHhCccccceEEEeehhhcc-------Cccccee
Confidence 36899999999999999999999999999999997 55 789999999999999999999987652 2357899
Q ss_pred EEEECCCCCC----ccHHHHHHHHHHcCCcCCCeEEE
Q 021116 234 YMSVTPPYTA----VDYEVLMAQISKSALVGKDSFIV 266 (317)
Q Consensus 234 lV~~dPPy~~----~~~~~~l~~L~~~~lLkpgG~iv 266 (317)
+|++++.... ...+.++.... ++|+|||+++
T Consensus 108 ~i~se~~~~~~~~e~~~~~~~~a~~--r~LkpgG~ii 142 (328)
T d1g6q1_ 108 IIISEWMGYFLLYESMMDTVLYARD--HYLVEGGLIF 142 (328)
T ss_dssp EEEECCCBTTBSTTCCHHHHHHHHH--HHEEEEEEEE
T ss_pred EEEEEecceeeccchhHHHHHHHHH--hccCCCeEEE
Confidence 9999875432 23455555543 5899999986
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.45 E-value=2e-13 Score=120.84 Aligned_cols=103 Identities=13% Similarity=0.191 Sum_probs=79.7
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
.++++|||+|||+|.+++.++++|. +|+|||.|+.|+ +.|++++...+. +++++++|+.++. ..++||
T Consensus 36 ~~~~~vLDiGCG~G~~~~~l~~~g~-~v~GvD~S~~ml-~~A~~~~~~~~~--~v~~~~~d~~~~~--------~~~~fD 103 (246)
T d1y8ca_ 36 LVFDDYLDLACGTGNLTENLCPKFK-NTWAVDLSQEML-SEAENKFRSQGL--KPRLACQDISNLN--------INRKFD 103 (246)
T ss_dssp CCTTEEEEETCTTSTTHHHHGGGSS-EEEEECSCHHHH-HHHHHHHHHTTC--CCEEECCCGGGCC--------CSCCEE
T ss_pred CCCCeEEEEeCcCCHHHHHHHHhCC-ccEeeccchhhh-hhccccccccCc--cceeeccchhhhc--------cccccc
Confidence 4578999999999999999999886 799999999999 999999888776 3899999998752 146899
Q ss_pred EEEEC-CCC-CCccHH---HHHHHHHHcCCcCCCeEEEEEeC
Q 021116 234 YMSVT-PPY-TAVDYE---VLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 234 lV~~d-PPy-~~~~~~---~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
+|++- -.+ .....+ ..++.+ +++|+|||+++++..
T Consensus 104 ~i~~~~~~~~~~~~~~~~~~~l~~~--~~~LkpgG~~i~~~~ 143 (246)
T d1y8ca_ 104 LITCCLDSTNYIIDSDDLKKYFKAV--SNHLKEGGVFIFDIN 143 (246)
T ss_dssp EEEECTTGGGGCCSHHHHHHHHHHH--HTTEEEEEEEEEEEE
T ss_pred ccceeeeeeeccCCHHHHHHHHHHH--HHhCCCCeEEEEEeC
Confidence 99972 111 112233 344444 379999999998654
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.44 E-value=1.6e-13 Score=127.15 Aligned_cols=103 Identities=17% Similarity=0.083 Sum_probs=84.3
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
.++++|||+|||+|.+++.|++.|+.+|++||.++.+ ..++++++.+++.++++++++|+.++. ...++||
T Consensus 32 ~~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~--~~a~~~~~~n~~~~~v~~~~~~~~~~~-------~~~~~~D 102 (316)
T d1oria_ 32 FKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSIS--DYAVKIVKANKLDHVVTIIKGKVEEVE-------LPVEKVD 102 (316)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTH--HHHHHHHHHTTCTTTEEEEESCTTTCC-------CSSSCEE
T ss_pred CCcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHHH--hhhhhHHHHhCCccccceEeccHHHcc-------cccceeE
Confidence 3689999999999999999999999899999999864 678899999999999999999987752 2347899
Q ss_pred EEEECCCCCC----ccHHHHHHHHHHcCCcCCCeEEEE
Q 021116 234 YMSVTPPYTA----VDYEVLMAQISKSALVGKDSFIVV 267 (317)
Q Consensus 234 lV~~dPPy~~----~~~~~~l~~L~~~~lLkpgG~ivv 267 (317)
+|+++..... ..++.++..+. ++|+|||+++.
T Consensus 103 ~ivs~~~~~~l~~e~~~~~~l~~~~--r~Lkp~G~iiP 138 (316)
T d1oria_ 103 IIISEWMGYCLFYESMLNTVLHARD--KWLAPDGLIFP 138 (316)
T ss_dssp EEEECCCBBTBTBTCCHHHHHHHHH--HHEEEEEEEES
T ss_pred EEeeeeeeeeeccHHHHHHHHHHHH--hcCCCCeEEEe
Confidence 9999865332 24566666554 58999999873
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.44 E-value=2.3e-13 Score=119.93 Aligned_cols=103 Identities=18% Similarity=0.235 Sum_probs=80.1
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
.+.++|||+|||||..++.+++.|+ +|+|||.|+.++ +.|++|+...+. +++++++|+.++. ..++||
T Consensus 40 ~~~~~iLDiGcGtG~~~~~l~~~~~-~v~gvD~s~~mi-~~a~~~~~~~~~--~i~~~~~d~~~l~--------~~~~fD 107 (251)
T d1wzna1 40 REVRRVLDLACGTGIPTLELAERGY-EVVGLDLHEEML-RVARRKAKERNL--KIEFLQGDVLEIA--------FKNEFD 107 (251)
T ss_dssp SCCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHHHHTTC--CCEEEESCGGGCC--------CCSCEE
T ss_pred CCCCEEEEeCCCCCccchhhcccce-EEEEEeeccccc-cccccccccccc--cchheehhhhhcc--------cccccc
Confidence 3567999999999999999988887 799999999999 999999988876 4899999998752 136899
Q ss_pred EEEEC-CCCCCc---cHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 234 YMSVT-PPYTAV---DYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 234 lV~~d-PPy~~~---~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
+|++- --+... +....++.+. ++|+|||++++...
T Consensus 108 ~I~~~~~~~~~~~~~~~~~~L~~~~--~~LkpgG~lii~~~ 146 (251)
T d1wzna1 108 AVTMFFSTIMYFDEEDLRKLFSKVA--EALKPGGVFITDFP 146 (251)
T ss_dssp EEEECSSGGGGSCHHHHHHHHHHHH--HHEEEEEEEEEEEE
T ss_pred hHhhhhhhhhcCChHHHHHHHHHHH--HHcCCCcEEEEEec
Confidence 99973 112111 2334455544 58999999998754
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.43 E-value=5.1e-13 Score=114.93 Aligned_cols=104 Identities=20% Similarity=0.236 Sum_probs=84.0
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
..+.+|||+|||+|..++.++++|. +|++||+++.++ +.++++++..++. ++++...|+.++. .+++||
T Consensus 29 ~~~grvLDiGcG~G~~~~~la~~g~-~v~gvD~s~~~l-~~a~~~~~~~~~~-~~~~~~~d~~~~~--------~~~~fD 97 (198)
T d2i6ga1 29 VAPGRTLDLGCGNGRNSLYLAANGY-DVTAWDKNPASM-ANLERIKAAEGLD-NLQTDLVDLNTLT--------FDGEYD 97 (198)
T ss_dssp SCSCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHHHHTTCT-TEEEEECCTTTCC--------CCCCEE
T ss_pred CCCCcEEEECCCCCHHHHHHHHHhh-hhccccCcHHHH-HHHHHHhhhcccc-chhhhheeccccc--------cccccc
Confidence 3467999999999999999999987 699999999999 9999999998886 4889999987652 247899
Q ss_pred EEEECCCCCC---ccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 234 YMSVTPPYTA---VDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 234 lV~~dPPy~~---~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
+|++...+.. .....+++.+. ++|+|||++++...
T Consensus 98 ~I~~~~~~~~~~~~~~~~~l~~~~--~~L~pgG~~~~~~~ 135 (198)
T d2i6ga1 98 FILSTVVMMFLEAQTIPGLIANMQ--RCTKPGGYNLIVAA 135 (198)
T ss_dssp EEEEESCGGGSCTTHHHHHHHHHH--HTEEEEEEEEEEEE
T ss_pred EEEEeeeeecCCHHHHHHHHHHHH--HHcCCCcEEEEEEe
Confidence 9998765542 23455666665 48999999888653
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.42 E-value=2.6e-13 Score=122.75 Aligned_cols=106 Identities=14% Similarity=0.092 Sum_probs=85.5
Q ss_pred CCCCeEEEECCCcchHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCC
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGP 231 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~-G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~ 231 (317)
.+|.+|||+|||+|.+++.+++. | ..+|+++|.+++++ +.|++|++.++..+++++..+|+.+.+ .+..
T Consensus 84 ~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~-~~A~~n~~~~~~~~nv~~~~~Di~~~~--------~~~~ 154 (250)
T d1yb2a1 84 RPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNL-KKAMDNLSEFYDIGNVRTSRSDIADFI--------SDQM 154 (250)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHH-HHHHHHHHTTSCCTTEEEECSCTTTCC--------CSCC
T ss_pred CCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHH-HHHHHHHHHhcCCCceEEEEeeeeccc--------ccce
Confidence 46899999999999999987753 3 35899999999999 999999998876677999999987753 2468
Q ss_pred ccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCCCCC
Q 021116 232 FDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTD 274 (317)
Q Consensus 232 fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~~~ 274 (317)
||.||+|.|-.+ +.++.+. +.|+|||++++..+..++
T Consensus 155 fD~V~ld~p~p~----~~l~~~~--~~LKpGG~lv~~~P~i~Q 191 (250)
T d1yb2a1 155 YDAVIADIPDPW----NHVQKIA--SMMKPGSVATFYLPNFDQ 191 (250)
T ss_dssp EEEEEECCSCGG----GSHHHHH--HTEEEEEEEEEEESSHHH
T ss_pred eeeeeecCCchH----HHHHHHH--HhcCCCceEEEEeCCcCh
Confidence 999999987432 3445444 379999999998775443
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.41 E-value=3.9e-13 Score=115.86 Aligned_cols=105 Identities=13% Similarity=0.146 Sum_probs=80.5
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
.++.+|||+|||+|.+++.+++.|. +|+|+|+|+.++ +.|++++...+. ++.++.+|+.+. +..+++||
T Consensus 36 ~~~~~ILDiGcG~G~~~~~la~~~~-~v~giD~S~~~i-~~ak~~~~~~~~--~~~~~~~d~~~l-------~~~~~~fD 104 (226)
T d1ve3a1 36 KKRGKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMI-RKAREYAKSRES--NVEFIVGDARKL-------SFEDKTFD 104 (226)
T ss_dssp CSCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHHHHTTC--CCEEEECCTTSC-------CSCTTCEE
T ss_pred CCCCEEEEECCCcchhhhhHhhhhc-ccccccccccch-hhhhhhhccccc--cccccccccccc-------cccCcCce
Confidence 3578999999999999999888876 799999999999 999999887764 367888998763 23457899
Q ss_pred EEEECCCCCC-c--cHHHHHHHHHHcCCcCCCeEEEEEeCC
Q 021116 234 YMSVTPPYTA-V--DYEVLMAQISKSALVGKDSFIVVEYPL 271 (317)
Q Consensus 234 lV~~dPPy~~-~--~~~~~l~~L~~~~lLkpgG~ivv~~~~ 271 (317)
+|++.--... . +...+++.+. ++|+|||++++....
T Consensus 105 ~I~~~~~l~~~~~~d~~~~l~~i~--~~LkpgG~lii~~~~ 143 (226)
T d1ve3a1 105 YVIFIDSIVHFEPLELNQVFKEVR--RVLKPSGKFIMYFTD 143 (226)
T ss_dssp EEEEESCGGGCCHHHHHHHHHHHH--HHEEEEEEEEEEEEC
T ss_pred EEEEecchhhCChhHHHHHHHHHH--HHcCcCcEEEEEEcC
Confidence 9998532221 1 2334455554 589999999887653
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.39 E-value=2.1e-13 Score=127.75 Aligned_cols=110 Identities=15% Similarity=0.044 Sum_probs=82.8
Q ss_pred CCCCeEEEECCCcchHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHhHHHh----------CCCCceEEEEecHHHHHHH
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWT----------GFLDVSSIHTVRVETFLER 221 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~-G-a~~V~aVDin~~al~~~ar~N~~~~----------gl~~~v~ii~gD~~~~l~~ 221 (317)
.+|.+|||+|||+|.+++.+++. | ..+|+++|++++++ +.|++|++.. +..++++++.+|+.++...
T Consensus 97 ~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~-~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~~~~ 175 (324)
T d2b25a1 97 NPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHH-DLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATED 175 (324)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHH-HHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC--
T ss_pred CCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHH-HHHHHHHHHhhhhhhhhhhhccccceeEEecchhhcccc
Confidence 47999999999999999987763 4 35899999999998 9999999875 3346799999998765433
Q ss_pred HhhhcCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCCCCCc
Q 021116 222 AEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDM 275 (317)
Q Consensus 222 ~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~~~l 275 (317)
. ....||.||+|.|-.+ ..++.+. +.|+|||++++..+.-+++
T Consensus 176 ~-----~~~~fD~V~LD~p~P~----~~l~~~~--~~LKpGG~lv~~~P~i~Qv 218 (324)
T d2b25a1 176 I-----KSLTFDAVALDMLNPH----VTLPVFY--PHLKHGGVCAVYVVNITQV 218 (324)
T ss_dssp ----------EEEEEECSSSTT----TTHHHHG--GGEEEEEEEEEEESSHHHH
T ss_pred c-----CCCCcceEeecCcCHH----HHHHHHH--HhccCCCEEEEEeCCHHHH
Confidence 2 2467999999987533 2455554 4899999999988765554
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.39 E-value=7.6e-13 Score=120.54 Aligned_cols=107 Identities=13% Similarity=0.115 Sum_probs=85.9
Q ss_pred CCCCeEEEECCCcchHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCC
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGP 231 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~-G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~ 231 (317)
.++.+|||+|||+|.+++.+++. | ..+|+++|++++++ +.|++|++.+++.+++.+..+|+.... ....
T Consensus 102 ~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~-~~A~~~~~~~g~~~~v~~~~~d~~~~~--------~~~~ 172 (266)
T d1o54a_ 102 KEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFA-KLAESNLTKWGLIERVTIKVRDISEGF--------DEKD 172 (266)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHH-HHHHHHHHHTTCGGGEEEECCCGGGCC--------SCCS
T ss_pred CCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHH-HHHHHHHHHhccccCcEEEeccccccc--------cccc
Confidence 47999999999999999988764 3 35899999999999 999999999999888999989975432 2467
Q ss_pred ccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCCCCCc
Q 021116 232 FDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDM 275 (317)
Q Consensus 232 fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~~~l 275 (317)
||.|++|.|-. .+.++.+. +.|+|||++++.++..+++
T Consensus 173 ~D~V~~d~p~p----~~~l~~~~--~~LKpGG~lv~~~P~~~Qv 210 (266)
T d1o54a_ 173 VDALFLDVPDP----WNYIDKCW--EALKGGGRFATVCPTTNQV 210 (266)
T ss_dssp EEEEEECCSCG----GGTHHHHH--HHEEEEEEEEEEESSHHHH
T ss_pred eeeeEecCCCH----HHHHHHHH--hhcCCCCEEEEEeCcccHH
Confidence 99999998732 33455544 3799999999988765543
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.39 E-value=3.1e-13 Score=118.29 Aligned_cols=106 Identities=14% Similarity=0.121 Sum_probs=82.6
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
..+.+|||+|||+|.++..+++.+..+|++||+++.++ +.|++++...+.. +++++++|+.++. ...++||
T Consensus 59 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l-~~ak~~~~~~~~~-~~~f~~~d~~~~~-------~~~~~fD 129 (222)
T d2ex4a1 59 TGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFL-VQAKTYLGEEGKR-VRNYFCCGLQDFT-------PEPDSYD 129 (222)
T ss_dssp CCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHH-HHHHHHTGGGGGG-EEEEEECCGGGCC-------CCSSCEE
T ss_pred CCCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHh-hcccccccccccc-ccccccccccccc-------ccccccc
Confidence 35689999999999999888777777899999999999 9999999887764 4799999998752 2357899
Q ss_pred EEEECCCCCC-cc--HHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 234 YMSVTPPYTA-VD--YEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 234 lV~~dPPy~~-~~--~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
+|++.--+.. .+ ..++++.+. ++|+|||++++..+
T Consensus 130 ~I~~~~~l~h~~~~~~~~~l~~i~--~~Lk~~G~~~i~~~ 167 (222)
T d2ex4a1 130 VIWIQWVIGHLTDQHLAEFLRRCK--GSLRPNGIIVIKDN 167 (222)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHH--HHEEEEEEEEEEEE
T ss_pred ccccccccccchhhhhhhHHHHHH--HhcCCcceEEEEEc
Confidence 9998643321 11 234555554 58999999998754
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.38 E-value=1.9e-12 Score=117.85 Aligned_cols=142 Identities=15% Similarity=0.097 Sum_probs=101.8
Q ss_pred eeecceEEecCCCC---CCCCChHHH---------------HHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHH
Q 021116 114 GKARRKKLLSPKGM---DVRPMMEVV---------------KGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAIS 175 (317)
Q Consensus 114 G~~~G~~l~~p~~~---~~rpt~~~v---------------~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas 175 (317)
|+-.|-++.+..+. ..+||.+.. ...+...+.. .++.+|||+|||+|++++.++.
T Consensus 44 Gk~~G~~v~t~~g~~~~v~~pt~~~~~~~~~r~tqiiypkD~s~Ii~~l~i-------~PG~~VLE~G~GsG~lt~~La~ 116 (264)
T d1i9ga_ 44 GLEQGSVVKSSNGALFLVLRPLLVDYVMSMPRGPQVIYPKDAAQIVHEGDI-------FPGARVLEAGAGSGALTLSLLR 116 (264)
T ss_dssp TCCTTEEEECSSCCEEEEECCCHHHHHTTSCSCSCCCCHHHHHHHHHHTTC-------CTTCEEEEECCTTSHHHHHHHH
T ss_pred CCCCCeEEEeCCCCEEEEeCCCHHHHHhhccCCccccchHHHHHHHHHhCC-------CCCCEEEecCcCCcHHHHHHHH
Confidence 45556677666554 237776432 2233333332 4799999999999999998876
Q ss_pred c-C-CCEEEEEeCCHHHHHHHHHHhHHHh--CCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCccHHHHHH
Q 021116 176 R-G-CSEVHFVEMDPWVVSNVLIPNLEWT--GFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMA 251 (317)
Q Consensus 176 ~-G-a~~V~aVDin~~al~~~ar~N~~~~--gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~ 251 (317)
. | ..+|+++|++++++ +.|++|++.+ +..++++++++|+.+. +..+..||.||+|-|-.+ +.++
T Consensus 117 ~vgp~G~V~~~d~~~~~~-~~Ar~n~~~~~~~~~~nv~~~~~d~~~~-------~~~~~~fDaV~ldlp~P~----~~l~ 184 (264)
T d1i9ga_ 117 AVGPAGQVISYEQRADHA-EHARRNVSGCYGQPPDNWRLVVSDLADS-------ELPDGSVDRAVLDMLAPW----EVLD 184 (264)
T ss_dssp HHCTTSEEEEECSCHHHH-HHHHHHHHHHHTSCCTTEEEECSCGGGC-------CCCTTCEEEEEEESSCGG----GGHH
T ss_pred hhCCCcEEEEecCCHHHH-HHHHHhhhhhccCCCceEEEEecccccc-------cccCCCcceEEEecCCHH----HHHH
Confidence 4 4 35899999999999 9999999875 3446799999998753 123578999999987433 3344
Q ss_pred HHHHcCCcCCCeEEEEEeCCCCCcc
Q 021116 252 QISKSALVGKDSFIVVEYPLRTDML 276 (317)
Q Consensus 252 ~L~~~~lLkpgG~ivv~~~~~~~l~ 276 (317)
.+. +.|+|||++++..+..+++.
T Consensus 185 ~~~--~~LkpGG~lv~~~P~i~Qv~ 207 (264)
T d1i9ga_ 185 AVS--RLLVAGGVLMVYVATVTQLS 207 (264)
T ss_dssp HHH--HHEEEEEEEEEEESSHHHHH
T ss_pred HHH--hccCCCCEEEEEeCccChHH
Confidence 443 37999999999888665543
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.37 E-value=9.3e-13 Score=116.37 Aligned_cols=104 Identities=13% Similarity=0.042 Sum_probs=80.6
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccE
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDl 234 (317)
.+.+|||+|||+|..+..+++.+..+|++||+|+.++ +.|+++++..+. ++.++.+|+......+ ..++||.
T Consensus 53 ~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~-~~a~~~~~~~~~--~~~~~~~~~~~~~~~~-----~~~~fD~ 124 (229)
T d1zx0a1 53 KGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVF-QRLRDWAPRQTH--KVIPLKGLWEDVAPTL-----PDGHFDG 124 (229)
T ss_dssp TCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHH-HHHHHHGGGCSS--EEEEEESCHHHHGGGS-----CTTCEEE
T ss_pred CCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHH-HHHHHHhhhccc--cccccccccccccccc-----ccccccc
Confidence 5789999999999999988877666899999999999 999999877653 4788889987765432 4578999
Q ss_pred EEECCCCCCc------cHHHHHHHHHHcCCcCCCeEEEEE
Q 021116 235 MSVTPPYTAV------DYEVLMAQISKSALVGKDSFIVVE 268 (317)
Q Consensus 235 V~~dPPy~~~------~~~~~l~~L~~~~lLkpgG~ivv~ 268 (317)
|+.|+..... +.+..++.+. ++|+|||++++.
T Consensus 125 i~fD~~~~~~~~~~~~~~~~~~~~~~--r~LkpGG~~~~~ 162 (229)
T d1zx0a1 125 ILYDTYPLSEETWHTHQFNFIKNHAF--RLLKPGGVLTYC 162 (229)
T ss_dssp EEECCCCCBGGGTTTHHHHHHHHTHH--HHEEEEEEEEEC
T ss_pred eeecccccccccccccCHHHHHHHHH--HHcCCCcEEEEE
Confidence 9999754322 1233444443 689999999864
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.36 E-value=3.4e-12 Score=111.62 Aligned_cols=124 Identities=10% Similarity=-0.031 Sum_probs=90.1
Q ss_pred CChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHc---CCCEEEEEeCCHHHHHHHHHHhHHHhCCCCc
Q 021116 131 PMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR---GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDV 207 (317)
Q Consensus 131 pt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~---Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~ 207 (317)
|.=+.+.+.+..++.... .++.+|||+|||||.++..++.. ...+|+|||+|+.|+ +.|+++++..+...+
T Consensus 20 P~Y~~~~~~i~~~~~~~~-----~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml-~~A~~~~~~~~~~~~ 93 (225)
T d1im8a_ 20 PGYSNIITAIGMLAERFV-----TADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMV-ERCRQHIAAYHSEIP 93 (225)
T ss_dssp TTHHHHHHHHHHHHHHHC-----CTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHH-HHHHHHHHTSCCSSC
T ss_pred CCHHHHHHHHHHHHHHhc-----CCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHH-HHHHHHhHhhcccch
Confidence 333444555555555432 46889999999999999887753 234899999999999 999999988887777
Q ss_pred eEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCC---ccHHHHHHHHHHcCCcCCCeEEEEEeCC
Q 021116 208 SSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTA---VDYEVLMAQISKSALVGKDSFIVVEYPL 271 (317)
Q Consensus 208 v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~---~~~~~~l~~L~~~~lLkpgG~ivv~~~~ 271 (317)
+++..+|+.++ ..+.+|+|++.--.+. .+...+++.+. +.|+|||.+++....
T Consensus 94 ~~~~~~d~~~~---------~~~~~d~i~~~~~l~~~~~~d~~~~l~~i~--~~LkpgG~li~~~~~ 149 (225)
T d1im8a_ 94 VEILCNDIRHV---------EIKNASMVILNFTLQFLPPEDRIALLTKIY--EGLNPNGVLVLSEKF 149 (225)
T ss_dssp EEEECSCTTTC---------CCCSEEEEEEESCGGGSCGGGHHHHHHHHH--HHEEEEEEEEEEEEC
T ss_pred hhhccchhhcc---------ccccceeeEEeeeccccChhhHHHHHHHHH--HhCCCCceeeccccc
Confidence 88888887654 2467899888522211 24456677665 589999999987543
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.36 E-value=8.4e-13 Score=117.77 Aligned_cols=108 Identities=14% Similarity=0.052 Sum_probs=81.7
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
.++++|||+|||+|.....++..|..+|+|||+|+.++ +.|++.+...+...++.++++|+..... ...++||
T Consensus 23 ~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l-~~A~~r~~~~~~~~~v~f~~~D~~~~~~------~~~~~fD 95 (252)
T d1ri5a_ 23 KRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSI-NDARVRARNMKRRFKVFFRAQDSYGRHM------DLGKEFD 95 (252)
T ss_dssp CTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHH-HHHHHHHHTSCCSSEEEEEESCTTTSCC------CCSSCEE
T ss_pred CCcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHH-HHHHHHHHhcCCCcceEEEEcchhhhcc------cccccce
Confidence 36889999999999998888888888899999999999 9999988877777779999999854310 1246799
Q ss_pred EEEECCCCCC--cc---HHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 234 YMSVTPPYTA--VD---YEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 234 lV~~dPPy~~--~~---~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
+|++.--.+. .. ....+..+. ++|+|||++++..+
T Consensus 96 ~V~~~~~l~~~~~~~~~~~~~l~~i~--~~Lk~gG~~i~~~~ 135 (252)
T d1ri5a_ 96 VISSQFSFHYAFSTSESLDIAQRNIA--RHLRPGGYFIMTVP 135 (252)
T ss_dssp EEEEESCGGGGGSSHHHHHHHHHHHH--HTEEEEEEEEEEEE
T ss_pred EEEEcceeeecCCCHHHHHHHHHHHh--ceeCCCCEEEEEec
Confidence 9998532211 11 223344443 68999999998754
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.36 E-value=1e-12 Score=110.32 Aligned_cols=116 Identities=13% Similarity=-0.029 Sum_probs=82.4
Q ss_pred HHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCC-----------CCc
Q 021116 139 AAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGF-----------LDV 207 (317)
Q Consensus 139 alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl-----------~~~ 207 (317)
+.+..|.. .++.+|||+|||+|..++.++++|. +|+|+|+|+.++ +.|+++++..+. ...
T Consensus 11 ~~~~~l~~-------~~~~rvLd~GCG~G~~a~~la~~G~-~V~gvD~S~~~i-~~a~~~~~~~~~~~~~~~~~~~~~~~ 81 (201)
T d1pjza_ 11 QYWSSLNV-------VPGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAV-ERYFTERGEQPHITSQGDFKVYAAPG 81 (201)
T ss_dssp HHHHHHCC-------CTTCEEEETTTCCSHHHHHHHHHCC-EEEEEEECHHHH-HHHHHHHCSCSEEEEETTEEEEECSS
T ss_pred HHHHHcCC-------CCCCEEEEecCcCCHHHHHHHHcCC-ceEeecccHHHH-HHHHHHhccccchhhhhhhhhccccc
Confidence 34555643 5789999999999999999999987 699999999999 999988754332 123
Q ss_pred eEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCc---cHHHHHHHHHHcCCcCCCeEEEEEeCC
Q 021116 208 SSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAV---DYEVLMAQISKSALVGKDSFIVVEYPL 271 (317)
Q Consensus 208 v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~---~~~~~l~~L~~~~lLkpgG~ivv~~~~ 271 (317)
++++++|+.+..... ...||+|+..--+..- .....++.+. ++|+|||.+++....
T Consensus 82 ~~~~~~d~~~l~~~~------~~~~D~i~~~~~l~~l~~~~~~~~~~~i~--~~LkpgG~l~l~~~~ 140 (201)
T d1pjza_ 82 IEIWCGDFFALTARD------IGHCAAFYDRAAMIALPADMRERYVQHLE--ALMPQACSGLLITLE 140 (201)
T ss_dssp SEEEEECCSSSTHHH------HHSEEEEEEESCGGGSCHHHHHHHHHHHH--HHSCSEEEEEEEEES
T ss_pred cceeccccccccccc------ccceeEEEEEeeeEecchhhhHHHHHHHH--HhcCCCcEEEEEEcc
Confidence 578888886653322 2579999875332211 2344555554 489999988765543
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.34 E-value=3e-12 Score=121.96 Aligned_cols=145 Identities=16% Similarity=0.197 Sum_probs=103.2
Q ss_pred CCCCCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHH-HcCCCEEEEEeCCHHHHHHHHHHhHHHhCCC
Q 021116 127 MDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAI-SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFL 205 (317)
Q Consensus 127 ~~~rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaa-s~Ga~~V~aVDin~~al~~~ar~N~~~~gl~ 205 (317)
.+++|.+..-+...+-.+.. .++.+|||.+||||..++.++ ..|+.+|+++|+|+.++ +++++|++.|+..
T Consensus 24 vFYNp~q~~NRDlsvl~~~~-------~~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~-~~i~~N~~lN~~~ 95 (375)
T d2dula1 24 VFYNPRMALNRDIVVVLLNI-------LNPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAY-ELMKRNVMLNFDG 95 (375)
T ss_dssp CCCCGGGHHHHHHHHHHHHH-------HCCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHH-HHHHHHHHHHCCS
T ss_pred cccCHHHhhhhHHHHHHHHH-------hCCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHH-HHHHHHHHhcCcc
Confidence 47888876655544444443 357899999999999999654 46788999999999999 9999999999875
Q ss_pred C--------------ceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCC
Q 021116 206 D--------------VSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPL 271 (317)
Q Consensus 206 ~--------------~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~ 271 (317)
+ ++.+.+.|+..++... ...||+|.+|| |+.. ...++.... .++.||++.+.+.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~Da~~~~~~~------~~~fDvIDiDP-fGs~--~pfldsAi~--a~~~~Gll~vTaT- 163 (375)
T d2dula1 96 ELRESKGRAILKGEKTIVINHDDANRLMAER------HRYFHFIDLDP-FGSP--MEFLDTALR--SAKRRGILGVTAT- 163 (375)
T ss_dssp CCEECSSEEEEESSSEEEEEESCHHHHHHHS------TTCEEEEEECC-SSCC--HHHHHHHHH--HEEEEEEEEEEEC-
T ss_pred ccccccccccccccceeEeehhhhhhhhHhh------cCcCCcccCCC-CCCc--HHHHHHHHH--HhccCCEEEEEec-
Confidence 3 4678889998877543 46799999997 6643 334444332 4789999998764
Q ss_pred CCCccccCCCeEEEEEeecCce
Q 021116 272 RTDMLDTCGCLVKIKDRRFGRT 293 (317)
Q Consensus 272 ~~~l~~~~~~~~~~~~r~yG~~ 293 (317)
+...+++.+.-..-++||..
T Consensus 164 --D~a~L~G~~~~~~~r~Yg~~ 183 (375)
T d2dula1 164 --DGAPLCGAHPRACLRKYLAV 183 (375)
T ss_dssp --CHHHHTTSSHHHHHHHHSSB
T ss_pred --CchhhcCCCcHHHHHHhCCe
Confidence 33333444332233667763
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.31 E-value=5.2e-12 Score=115.56 Aligned_cols=102 Identities=15% Similarity=0.099 Sum_probs=84.1
Q ss_pred CCCCeEEEECCCcchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF 232 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~-Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~f 232 (317)
.++.+|||+|||+|.+++.++++ |+ +|++||+++..+ +.|++.++..|+.+++.+...|..++ .++|
T Consensus 51 ~~g~~VLDiGCG~G~~a~~~a~~~g~-~v~gi~ls~~q~-~~a~~~~~~~~l~~~~~~~~~d~~~~----------~~~f 118 (280)
T d2fk8a1 51 KPGMTLLDIGCGWGTTMRRAVERFDV-NVIGLTLSKNQH-ARCEQVLASIDTNRSRQVLLQGWEDF----------AEPV 118 (280)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHCC-EEEEEESCHHHH-HHHHHHHHTSCCSSCEEEEESCGGGC----------CCCC
T ss_pred CCCCEEEEecCCchHHHHHHHHhCce-eEEEecchHHHH-HHHHHHHHhhccccchhhhhhhhhhh----------ccch
Confidence 46899999999999999988876 65 899999999998 99999999999988888888887653 4789
Q ss_pred cEEEECCCCC-C--ccHHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 233 DYMSVTPPYT-A--VDYEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 233 DlV~~dPPy~-~--~~~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
|.|++---+. . ..+...++.+. ++|+|||++++..
T Consensus 119 D~i~si~~~eh~~~~~~~~~f~~i~--~~LkpgG~~~i~~ 156 (280)
T d2fk8a1 119 DRIVSIEAFEHFGHENYDDFFKRCF--NIMPADGRMTVQS 156 (280)
T ss_dssp SEEEEESCGGGTCGGGHHHHHHHHH--HHSCTTCEEEEEE
T ss_pred hhhhHhhHHHHhhhhhHHHHHHHHH--hccCCCceEEEEE
Confidence 9999743332 1 25677788776 4899999999875
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.31 E-value=1e-11 Score=109.43 Aligned_cols=111 Identities=14% Similarity=0.157 Sum_probs=86.5
Q ss_pred CCCeEEEECCCcchHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCc
Q 021116 155 RPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF 232 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~--Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~f 232 (317)
+.++|||+|||+|..++.++.. ...+|+++|++++.+ +.|++|++..|+.++++++.||+.+.+..+.. ......|
T Consensus 56 kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~-~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~-~~~~~~~ 133 (214)
T d2cl5a1 56 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYA-AITQQMLNFAGLQDKVTILNGASQDLIPQLKK-KYDVDTL 133 (214)
T ss_dssp CCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHH-HHHHHHHHHHTCGGGEEEEESCHHHHGGGHHH-HSCCCCE
T ss_pred CCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHH-HHHHHHHHHcCCCccceeeeccccccccchhh-ccccccc
Confidence 4679999999999999987653 235899999999998 99999999999999999999999987654421 1223579
Q ss_pred cEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 233 DYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 233 DlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
|+||+|. .+..+..........++|+|||+|++..
T Consensus 134 D~ifiD~--~~~~~~~~~~l~~~~~lLkpGGvIv~Dd 168 (214)
T d2cl5a1 134 DMVFLDH--WKDRYLPDTLLLEKCGLLRKGTVLLADN 168 (214)
T ss_dssp EEEEECS--CGGGHHHHHHHHHHTTCEEEEEEEEESC
T ss_pred ceeeecc--cccccccHHHHHHHhCccCCCcEEEEeC
Confidence 9999994 3344554444444457899999988754
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.30 E-value=2.1e-12 Score=113.49 Aligned_cols=111 Identities=16% Similarity=0.066 Sum_probs=82.4
Q ss_pred HHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEec
Q 021116 137 KGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVR 214 (317)
Q Consensus 137 ~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~-G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD 214 (317)
...+.+.+.. .++.+|||+|||||.++..+++. | ..+|+++|++++++ +.|++|++..++.+ +.++.+|
T Consensus 64 ~a~~l~~l~l-------~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~-~~a~~~~~~~~~~n-~~~~~~d 134 (213)
T d1dl5a1 64 MALFMEWVGL-------DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKIC-EIAKRNVERLGIEN-VIFVCGD 134 (213)
T ss_dssp HHHHHHHTTC-------CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHH-HHHHHHHHHTTCCS-EEEEESC
T ss_pred hHHHHHhhhc-------cccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhH-HHhhhhHhhhcccc-cccccCc
Confidence 3345566654 47899999999999999877653 3 34799999999999 99999999999865 7888999
Q ss_pred HHHHHHHHhhhcCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 215 VETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 215 ~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
+.+... ..++||+|+++..... ..+.+++ .|+|||++++...
T Consensus 135 ~~~~~~-------~~~~fD~I~~~~~~~~-~p~~l~~------~LkpGG~lv~pv~ 176 (213)
T d1dl5a1 135 GYYGVP-------EFSPYDVIFVTVGVDE-VPETWFT------QLKEGGRVIVPIN 176 (213)
T ss_dssp GGGCCG-------GGCCEEEEEECSBBSC-CCHHHHH------HEEEEEEEEEEBC
T ss_pred hHHccc-------cccchhhhhhhccHHH-hHHHHHH------hcCCCcEEEEEEC
Confidence 876432 1367999999864321 1122222 5899999988543
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.29 E-value=2.3e-11 Score=111.97 Aligned_cols=103 Identities=15% Similarity=0.098 Sum_probs=84.3
Q ss_pred CCCCeEEEECCCcchHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF 232 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas-~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~f 232 (317)
.+|.+|||+|||.|.+++.++. .|+ +|++|+++++.+ +.+++.++..|+.+++++...|.... +++|
T Consensus 60 ~~G~~VLDiGCG~G~~~~~~a~~~g~-~v~git~s~~q~-~~a~~~~~~~~l~~~v~~~~~d~~~~----------~~~f 127 (291)
T d1kpia_ 60 EPGMTLLDIGCGWGSTMRHAVAEYDV-NVIGLTLSENQY-AHDKAMFDEVDSPRRKEVRIQGWEEF----------DEPV 127 (291)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHH-HHHHHHHHHSCCSSCEEEEECCGGGC----------CCCC
T ss_pred CCCCEEEEecCcchHHHHHHHHhcCc-ceeeccchHHHH-HHHHHHHHhhccchhhhhhhhccccc----------cccc
Confidence 4799999999999999998775 566 799999999998 99999999999999999998886532 4789
Q ss_pred cEEEECCCC-CC---------ccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 233 DYMSVTPPY-TA---------VDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 233 DlV~~dPPy-~~---------~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
|.|++--.+ +. ..|+..++.+. ++|+|||++++..-
T Consensus 128 D~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~--~~LkpgG~~~l~~i 173 (291)
T d1kpia_ 128 DRIVSLGAFEHFADGAGDAGFERYDTFFKKFY--NLTPDDGRMLLHTI 173 (291)
T ss_dssp SEEEEESCGGGTTCCSSCCSTTHHHHHHHHHH--HTSCTTCEEEEEEE
T ss_pred ceEeechhHHhcchhhhhhHHHHHHHHHHHHH--HhCCCCCceEEEEE
Confidence 999974332 11 24678888886 59999999998653
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.28 E-value=1.8e-11 Score=108.87 Aligned_cols=111 Identities=11% Similarity=0.089 Sum_probs=91.3
Q ss_pred CCCeEEEECCCcchHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCc
Q 021116 155 RPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF 232 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~-G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~f 232 (317)
+.++||++||++|.-++.++.. + ..+|+.+|.+++.+ +.|++|++..|+.++++++.+|+.+.+..+.......++|
T Consensus 59 ~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~-~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~f 137 (227)
T d1susa1 59 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENY-ELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSY 137 (227)
T ss_dssp TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHH-HHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTCB
T ss_pred CCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhH-HHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCce
Confidence 4679999999999999986642 2 35899999999998 9999999999999999999999999987763211124689
Q ss_pred cEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 233 DYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 233 DlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
|+||+|. .+..|...++.+. ++|++||+|++..-
T Consensus 138 D~iFiDa--~k~~y~~~~e~~~--~ll~~gGiii~DNv 171 (227)
T d1susa1 138 DFIFVDA--DKDNYLNYHKRLI--DLVKVGGVIGYDNT 171 (227)
T ss_dssp SEEEECS--CSTTHHHHHHHHH--HHBCTTCCEEEETT
T ss_pred eEEEecc--chhhhHHHHHHHH--hhcCCCcEEEEccC
Confidence 9999996 5567888887775 38999999999754
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.27 E-value=3.4e-12 Score=114.79 Aligned_cols=105 Identities=11% Similarity=0.114 Sum_probs=80.1
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
....+|||+|||+|.++..++..++.+|++||.++.++ +.|++++... ++++++++|+.++. ..+++||
T Consensus 92 ~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l-~~a~~~~~~~---~~~~~~~~d~~~~~-------~~~~~fD 160 (254)
T d1xtpa_ 92 HGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHML-EEAKRELAGM---PVGKFILASMETAT-------LPPNTYD 160 (254)
T ss_dssp CCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHH-HHHHHHTTTS---SEEEEEESCGGGCC-------CCSSCEE
T ss_pred CCCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHH-Hhhhcccccc---ccceeEEccccccc-------cCCCccc
Confidence 35789999999999999988877777899999999999 9999886533 34789999988752 2357899
Q ss_pred EEEECCCCCCcc---HHHHHHHHHHcCCcCCCeEEEEEeCC
Q 021116 234 YMSVTPPYTAVD---YEVLMAQISKSALVGKDSFIVVEYPL 271 (317)
Q Consensus 234 lV~~dPPy~~~~---~~~~l~~L~~~~lLkpgG~ivv~~~~ 271 (317)
+|++......-. ..+.++.+. ++|+|||++++..+.
T Consensus 161 ~I~~~~vl~hl~d~d~~~~l~~~~--~~LkpgG~iii~e~~ 199 (254)
T d1xtpa_ 161 LIVIQWTAIYLTDADFVKFFKHCQ--QALTPNGYIFFKENC 199 (254)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHH--HHEEEEEEEEEEEEB
T ss_pred eEEeeccccccchhhhHHHHHHHH--HhcCCCcEEEEEecC
Confidence 999876543211 234445444 589999999987653
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.27 E-value=3.7e-11 Score=106.27 Aligned_cols=111 Identities=15% Similarity=0.088 Sum_probs=90.2
Q ss_pred CCCCeEEEECCCcchHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCC
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGP 231 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~-G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~ 231 (317)
.+.++|||+|||+|.-++.++.. . ..+|+.+|.+++.+ +.|++|++..|+.++++++.+|+.+.+..+.. ....++
T Consensus 58 ~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~-~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~-~~~~~~ 135 (219)
T d2avda1 58 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPP-ELGRPLWRQAEAEHKIDLRLKPALETLDELLA-AGEAGT 135 (219)
T ss_dssp TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHH-HHHHHHHHHTTCTTTEEEEESCHHHHHHHHHH-TTCTTC
T ss_pred cCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHH-HHHHHHHHhcCccceEEEEEeehhhcchhhhh-hcccCC
Confidence 35789999999999999987642 1 34899999999998 99999999999999999999999988765421 123468
Q ss_pred ccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 232 FDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 232 fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
||+||+|- .+..|...++.+. ++|++||+|++...
T Consensus 136 fD~ifiD~--dk~~y~~~~~~~~--~lL~~GGvii~Dn~ 170 (219)
T d2avda1 136 FDVAVVDA--DKENCSAYYERCL--QLLRPGGILAVLRV 170 (219)
T ss_dssp EEEEEECS--CSTTHHHHHHHHH--HHEEEEEEEEEECC
T ss_pred ccEEEEeC--CHHHHHHHHHHHH--HHhcCCcEEEEeCC
Confidence 99999995 4456777777665 48999999999654
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.27 E-value=3.1e-11 Score=109.68 Aligned_cols=122 Identities=16% Similarity=0.111 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCC---ceEE
Q 021116 134 EVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLD---VSSI 210 (317)
Q Consensus 134 ~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~---~v~i 210 (317)
+.....+.+.+.. ..+.+|||+|||+|.+++.++++|. +|+|||+|+.++ +.|++|....+... +..+
T Consensus 42 ~~~~~~l~~~l~~-------~~~~~vLD~GcG~G~~~~~la~~g~-~v~gvD~S~~ml-~~A~~~~~~~~~~~~~~~~~~ 112 (292)
T d1xvaa_ 42 AEYKAWLLGLLRQ-------HGCHRVLDVACGTGVDSIMLVEEGF-SVTSVDASDKML-KYALKERWNRRKEPAFDKWVI 112 (292)
T ss_dssp HHHHHHHHHHHHH-------TTCCEEEESSCTTSHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHHHHTTTSHHHHTCEE
T ss_pred HHHHHHHHHHhhh-------cCCCEEEEecCCCcHHHHHHHHcCC-eeeeccCchHHH-HHHHHHHHhcccccccceeee
Confidence 3344556666665 3467999999999999999999986 799999999999 99999988766531 2345
Q ss_pred EEecHHHHHHHHhhhcCCCCCccEEEECC-C--CCC---c---cHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 211 HTVRVETFLERAEQFVGKDGPFDYMSVTP-P--YTA---V---DYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 211 i~gD~~~~l~~~~~~~~~~~~fDlV~~dP-P--y~~---~---~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
...|+....... ...+.||+|++-- . |.. . +....++.+. ++|+|||+++++..
T Consensus 113 ~~~~~~~~~~~~----~~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~LkpgG~li~~~~ 175 (292)
T d1xvaa_ 113 EEANWLTLDKDV----PAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIA--SMVRPGGLLVIDHR 175 (292)
T ss_dssp EECCGGGHHHHS----CCTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHH--HTEEEEEEEEEEEE
T ss_pred eecccccccccc----CCCCCceEEEEecCchhhcCCcccChHHHHHHHHHHH--HHcCcCcEEEEeec
Confidence 566665443221 1246799998631 1 111 1 2334455544 69999999999764
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.27 E-value=1.3e-11 Score=108.17 Aligned_cols=102 Identities=19% Similarity=0.176 Sum_probs=77.9
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
.++++|||+|||+|.++..++.+|. +|++||+|+.++ +.|+++.. ++++++++|+.+.. .+++||
T Consensus 19 ~~~~~VLDiGcG~G~~~~~l~~~g~-~v~giD~s~~~i-~~a~~~~~-----~~~~~~~~~~~~~~--------~~~~fD 83 (225)
T d2p7ia1 19 FRPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAI-SHAQGRLK-----DGITYIHSRFEDAQ--------LPRRYD 83 (225)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTTCS-CEEEEESCHHHH-HHHHHHSC-----SCEEEEESCGGGCC--------CSSCEE
T ss_pred CCCCcEEEEeCCCcHHHHHHHHcCC-eEEEEeCcHHHh-hhhhcccc-----cccccccccccccc--------cccccc
Confidence 4678999999999999998888776 699999999999 99987643 35889999987652 247899
Q ss_pred EEEECCCCC-CccHHHHHHHHHHcCCcCCCeEEEEEeCC
Q 021116 234 YMSVTPPYT-AVDYEVLMAQISKSALVGKDSFIVVEYPL 271 (317)
Q Consensus 234 lV~~dPPy~-~~~~~~~l~~L~~~~lLkpgG~ivv~~~~ 271 (317)
+|++.--.. ..+....+..+.. ++|+|||++++..+.
T Consensus 84 ~I~~~~vleh~~d~~~~l~~i~~-~~Lk~gG~l~i~~pn 121 (225)
T d2p7ia1 84 NIVLTHVLEHIDDPVALLKRIND-DWLAEGGRLFLVCPN 121 (225)
T ss_dssp EEEEESCGGGCSSHHHHHHHHHH-TTEEEEEEEEEEEEC
T ss_pred cccccceeEecCCHHHHHHHHHH-HhcCCCceEEEEeCC
Confidence 999853321 2344555555532 689999999998653
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.26 E-value=1.1e-11 Score=108.04 Aligned_cols=99 Identities=19% Similarity=0.229 Sum_probs=75.6
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
..+.+|||+|||+|.++..++..|+ +|+|+|+++.++ +.|++|. .. .++++|+.+. +..+++||
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~l-~~a~~~~----~~---~~~~~~~~~l-------~~~~~~fD 104 (246)
T d2avna1 41 KNPCRVLDLGGGTGKWSLFLQERGF-EVVLVDPSKEML-EVAREKG----VK---NVVEAKAEDL-------PFPSGAFE 104 (246)
T ss_dssp CSCCEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHH-HHHHHHT----CS---CEEECCTTSC-------CSCTTCEE
T ss_pred CCCCEEEEECCCCchhcccccccce-EEEEeecccccc-ccccccc----cc---cccccccccc-------cccccccc
Confidence 3578999999999999999988876 799999999999 9998763 22 2567887663 23458899
Q ss_pred EEEEC-CCC-CCccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 234 YMSVT-PPY-TAVDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 234 lV~~d-PPy-~~~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
+|++- .-+ +..+.+..++.+. ++|+|||++++..+
T Consensus 105 ~ii~~~~~~~~~~d~~~~l~~i~--r~Lk~gG~~ii~~~ 141 (246)
T d2avna1 105 AVLALGDVLSYVENKDKAFSEIR--RVLVPDGLLIATVD 141 (246)
T ss_dssp EEEECSSHHHHCSCHHHHHHHHH--HHEEEEEEEEEEEE
T ss_pred ceeeecchhhhhhhHHHHHHHHH--hhcCcCcEEEEEEC
Confidence 99973 222 1235566777665 58999999998764
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.25 E-value=2.5e-11 Score=107.51 Aligned_cols=103 Identities=12% Similarity=0.050 Sum_probs=77.0
Q ss_pred CCCCeEEEECCCcchHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHhHHHhCCC----CceEEEEecHHHHHHHHhhhcC
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFL----DVSSIHTVRVETFLERAEQFVG 227 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~-G-a~~V~aVDin~~al~~~ar~N~~~~gl~----~~v~ii~gD~~~~l~~~~~~~~ 227 (317)
.++.+|||+|||||..+..++.. | ..+|+++|++++++ +.|++|++..++. ++++++.+|+.....
T Consensus 75 ~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~-~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~~------- 146 (224)
T d1i1na_ 75 HEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELV-DDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYA------- 146 (224)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHH-HHHHHHHHHHCTHHHHTSSEEEEESCGGGCCG-------
T ss_pred CCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHH-HHHHHhccccCcccccccceEEEEeecccccc-------
Confidence 46899999999999998766653 3 45899999999999 9999999887653 458899999875432
Q ss_pred CCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCC
Q 021116 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPL 271 (317)
Q Consensus 228 ~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~ 271 (317)
....||.|+++..... ..+. +. +.|+|||++++-...
T Consensus 147 ~~~~fD~I~~~~~~~~-ip~~----l~--~~LkpGG~LV~pv~~ 183 (224)
T d1i1na_ 147 EEAPYDAIHVGAAAPV-VPQA----LI--DQLKPGGRLILPVGP 183 (224)
T ss_dssp GGCCEEEEEECSBBSS-CCHH----HH--HTEEEEEEEEEEESC
T ss_pred hhhhhhhhhhhcchhh-cCHH----HH--hhcCCCcEEEEEEcc
Confidence 2368999999853221 1222 32 268999999986543
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.25 E-value=1.6e-11 Score=107.93 Aligned_cols=108 Identities=15% Similarity=0.014 Sum_probs=80.4
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhC----------------CCCceEEEEecHHH
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTG----------------FLDVSSIHTVRVET 217 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~g----------------l~~~v~ii~gD~~~ 217 (317)
.++.+|||+|||+|..++.++++|. +|+|||+++.++ +.|+++....+ ...+++++++|+.+
T Consensus 44 ~~~~rvLd~GCG~G~~a~~LA~~G~-~V~gvD~S~~ai-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~ 121 (229)
T d2bzga1 44 KSGLRVFFPLCGKAVEMKWFADRGH-SVVGVEISELGI-QEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFD 121 (229)
T ss_dssp CCSCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHH-HHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGGG
T ss_pred CCCCEEEEeCCCCcHHHHHHHhCCC-cEEEEeCCHHHH-HHHHHHhhccccccchhcccccceeeecCCcEEEEEcchhh
Confidence 4688999999999999999999998 699999999999 88887654321 12468999999877
Q ss_pred HHHHHhhhcCCCCCccEEEECCCCCC---ccHHHHHHHHHHcCCcCCCeEEEEEeCC
Q 021116 218 FLERAEQFVGKDGPFDYMSVTPPYTA---VDYEVLMAQISKSALVGKDSFIVVEYPL 271 (317)
Q Consensus 218 ~l~~~~~~~~~~~~fDlV~~dPPy~~---~~~~~~l~~L~~~~lLkpgG~ivv~~~~ 271 (317)
... ...+.||+|+.---+.. ...+..++.+. ++|+|||++++.+..
T Consensus 122 l~~------~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~--~~LkpgG~~~l~~~~ 170 (229)
T d2bzga1 122 LPR------TNIGKFDMIWDRGALVAINPGDRKCYADTMF--SLLGKKFQYLLCVLS 170 (229)
T ss_dssp GGG------SCCCCEEEEEESSSTTTSCGGGHHHHHHHHH--HTEEEEEEEEEEEEE
T ss_pred ccc------cccCceeEEEEEEEEEeccchhhHHHHHHHH--hhcCCcceEEEEEcc
Confidence 532 23478999987543322 23455666665 489999987776543
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.22 E-value=5.8e-11 Score=103.83 Aligned_cols=106 Identities=10% Similarity=0.130 Sum_probs=83.2
Q ss_pred CCeEEEECCCcchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccE
Q 021116 156 PGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (317)
Q Consensus 156 ~~rVLDlgcGtG~l~Ieaas~G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDl 234 (317)
+..|||+|||+|...+.++... ...++|||+++.++ ..|.++++..|+. ++.++++|+..+...+ .++++|.
T Consensus 30 ~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i-~~a~~~~~~~~l~-Nv~~~~~Da~~l~~~~-----~~~~~d~ 102 (204)
T d2fcaa1 30 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVI-VTAVQKVKDSEAQ-NVKLLNIDADTLTDVF-----EPGEVKR 102 (204)
T ss_dssp CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHH-HHHHHHHHHSCCS-SEEEECCCGGGHHHHC-----CTTSCCE
T ss_pred CceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHH-HHHHHHHHHHhcc-Cchhcccchhhhhccc-----Cchhhhc
Confidence 4589999999999999877754 45899999999999 9999999999996 4999999998876543 3578998
Q ss_pred EEEC--CCCCCcc-------HHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 235 MSVT--PPYTAVD-------YEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 235 V~~d--PPy~~~~-------~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
|++. .|+.+.. ..+.++.+. ++|+|||.|++.++
T Consensus 103 v~i~fp~P~~k~~h~k~Rl~~~~~l~~~~--r~LkpgG~l~i~TD 145 (204)
T d2fcaa1 103 VYLNFSDPWPKKRHEKRRLTYSHFLKKYE--EVMGKGGSIHFKTD 145 (204)
T ss_dssp EEEESCCCCCSGGGGGGSTTSHHHHHHHH--HHHTTSCEEEEEES
T ss_pred cccccccccchhhhcchhhhHHHHHHHHH--HhCCCCcEEEEEEC
Confidence 8763 2343321 145666665 58999999998764
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.20 E-value=1.1e-10 Score=106.95 Aligned_cols=103 Identities=16% Similarity=0.161 Sum_probs=83.3
Q ss_pred CCCCeEEEECCCcchHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF 232 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas-~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~f 232 (317)
.+|.+|||+|||.|.+++.+++ .|+ +|++|.+++..+ +.|++.++..|+.+++++..+|..++ +++|
T Consensus 61 ~~G~~VLDiGCG~G~~a~~~a~~~g~-~v~git~s~~Q~-~~a~~~~~~~g~~~~v~~~~~d~~~~----------~~~f 128 (285)
T d1kpga_ 61 QPGMTLLDVGCGWGATMMRAVEKYDV-NVVGLTLSKNQA-NHVQQLVANSENLRSKRVLLAGWEQF----------DEPV 128 (285)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHH-HHHHHHHHTCCCCSCEEEEESCGGGC----------CCCC
T ss_pred CCCCEEEEecCcchHHHHHHHhcCCc-ceEEEeccHHHH-HHHHHHHHhhhhhhhhHHHHhhhhcc----------cccc
Confidence 4789999999999999998665 576 799999999998 99999999999999999999997654 3789
Q ss_pred cEEEECCCC-CC--ccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 233 DYMSVTPPY-TA--VDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 233 DlV~~dPPy-~~--~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
|.|++=-.+ +. ..+...++.+. ++|+|||++++..-
T Consensus 129 D~i~si~~~eh~~~~~~~~~~~~~~--r~LkpgG~~~l~~i 167 (285)
T d1kpga_ 129 DRIVSIGAFEHFGHERYDAFFSLAH--RLLPADGVMLLHTI 167 (285)
T ss_dssp SEEEEESCGGGTCTTTHHHHHHHHH--HHSCTTCEEEEEEE
T ss_pred cceeeehhhhhcCchhHHHHHHHHH--hhcCCCCcEEEEEE
Confidence 988863222 11 24567777765 58999999987543
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.19 E-value=6.2e-11 Score=110.37 Aligned_cols=123 Identities=13% Similarity=-0.024 Sum_probs=85.9
Q ss_pred ChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHhHHHh-------C
Q 021116 132 MMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWT-------G 203 (317)
Q Consensus 132 t~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas-~Ga~~V~aVDin~~al~~~ar~N~~~~-------g 203 (317)
+.......+++.+.. .++.+|||+|||+|.+.+.++. .++.+++|||+++.++ +.|+++++.+ |
T Consensus 135 ~~~~~~~~~~~~~~l-------~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~-~~a~~~~~~~~~~~~~~g 206 (328)
T d1nw3a_ 135 TSFDLVAQMIDEIKM-------TDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPA-KYAETMDREFRKWMKWYG 206 (328)
T ss_dssp CCHHHHHHHHHHSCC-------CTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHH-HHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHcCC-------CCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHH-HHHHHHHHHHHHHhhhcc
Confidence 334455556666543 4688999999999999998765 5777899999999998 9999887653 3
Q ss_pred CC-CceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 204 FL-DVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 204 l~-~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
.. .+++++++|+.+...... -...|+|+++--+........+..+. +.|||||+|++..
T Consensus 207 ~~~~~i~~~~gd~~~~~~~~~-----~~~advi~~~~~~f~~~~~~~l~e~~--r~LKpGg~iv~~~ 266 (328)
T d1nw3a_ 207 KKHAEYTLERGDFLSEEWRER-----IANTSVIFVNNFAFGPEVDHQLKERF--ANMKEGGRIVSSK 266 (328)
T ss_dssp CCCCCEEEEECCTTSHHHHHH-----HHHCSEEEECCTTTCHHHHHHHHHHH--TTCCTTCEEEESS
T ss_pred ccCCceEEEECcccccccccc-----cCcceEEEEcceecchHHHHHHHHHH--HhCCCCcEEEEec
Confidence 32 459999999876431110 02358999874332234444555443 6899999999754
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.18 E-value=3.9e-11 Score=108.96 Aligned_cols=104 Identities=13% Similarity=0.088 Sum_probs=81.8
Q ss_pred CCCCeEEEECCCcchHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCC
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGP 231 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~-G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~ 231 (317)
.++.+|||+|||+|.+++.++.. + ..+|+++|+++.++ +.|++|++..+. +++++++|+.+.. ..++
T Consensus 26 ~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l-~~a~~~~~~~~~--~~~f~~~d~~~~~--------~~~~ 94 (281)
T d2gh1a1 26 TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLL-AEARELFRLLPY--DSEFLEGDATEIE--------LNDK 94 (281)
T ss_dssp CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHH-HHHHHHHHSSSS--EEEEEESCTTTCC--------CSSC
T ss_pred CCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHh-hhhhcccccccc--ccccccccccccc--------ccCC
Confidence 35789999999999999987764 2 24799999999999 999999988776 4899999987641 1357
Q ss_pred ccEEEECCCCC-CccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 232 FDYMSVTPPYT-AVDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 232 fDlV~~dPPy~-~~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
||+|++.--+. ..+....++.+. +.|+|||++++..+
T Consensus 95 fD~v~~~~~l~~~~d~~~~l~~~~--~~LkpgG~lii~~~ 132 (281)
T d2gh1a1 95 YDIAICHAFLLHMTTPETMLQKMI--HSVKKGGKIICFEP 132 (281)
T ss_dssp EEEEEEESCGGGCSSHHHHHHHHH--HTEEEEEEEEEEEC
T ss_pred ceEEEEehhhhcCCCHHHHHHHHH--HHcCcCcEEEEEEC
Confidence 99999875432 235667777776 48999999988764
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.17 E-value=2e-11 Score=108.41 Aligned_cols=106 Identities=14% Similarity=0.109 Sum_probs=78.3
Q ss_pred HHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHH
Q 021116 139 AAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF 218 (317)
Q Consensus 139 alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~ 218 (317)
.+++.|.. .++.+|||+|||||.++..++..+ .+|+++|+++..+ +.|++|+... ++++++.+|....
T Consensus 61 ~ml~~L~l-------~~g~~VLdIG~GsGy~ta~La~l~-~~V~aiE~~~~~~-~~A~~~~~~~---~nv~~~~~d~~~g 128 (224)
T d1vbfa_ 61 FMLDELDL-------HKGQKVLEIGTGIGYYTALIAEIV-DKVVSVEINEKMY-NYASKLLSYY---NNIKLILGDGTLG 128 (224)
T ss_dssp HHHHHTTC-------CTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHH-HHHHHHHTTC---SSEEEEESCGGGC
T ss_pred HHHHHhhh-------cccceEEEecCCCCHHHHHHHHHh-cccccccccHHHH-HHHHHHHhcc---cccccccCchhhc
Confidence 35555544 478999999999999998777765 5899999999998 9999987643 4599999998663
Q ss_pred HHHHhhhcCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 219 LERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 219 l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
... ..+||.|+++.... . +.+.+.+ .|++||++++-..
T Consensus 129 ~~~-------~~pfD~Iiv~~a~~--~---ip~~l~~--qLk~GGrLV~pvg 166 (224)
T d1vbfa_ 129 YEE-------EKPYDRVVVWATAP--T---LLCKPYE--QLKEGGIMILPIG 166 (224)
T ss_dssp CGG-------GCCEEEEEESSBBS--S---CCHHHHH--TEEEEEEEEEEEC
T ss_pred chh-------hhhHHHHHhhcchh--h---hhHHHHH--hcCCCCEEEEEEc
Confidence 321 36799999975322 1 1222222 6899999998654
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.16 E-value=2.6e-11 Score=107.01 Aligned_cols=109 Identities=17% Similarity=0.096 Sum_probs=82.8
Q ss_pred HHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHH
Q 021116 139 AAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (317)
Q Consensus 139 alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~-Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~ 217 (317)
.+.+.|.. .++.+|||+|||||..+..+++. | .+|+++|.++..+ +.|++|++.+|+. +++++++|..+
T Consensus 69 ~ml~~L~l-------~~g~~VLeIGsGsGY~taila~l~g-~~V~~ie~~~~l~-~~a~~~l~~~g~~-nv~~~~gd~~~ 138 (215)
T d1jg1a_ 69 IMLEIANL-------KPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELV-EFAKRNLERAGVK-NVHVILGDGSK 138 (215)
T ss_dssp HHHHHHTC-------CTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHH-HHHHHHHHHTTCC-SEEEEESCGGG
T ss_pred HHHHhhcc-------CccceEEEecCCCChhHHHHHHhhC-ceeEEEeccHHHH-HHHHHHHHHcCCc-eeEEEECcccc
Confidence 44556654 47899999999999999866654 4 4699999999998 9999999999985 49999999876
Q ss_pred HHHHHhhhcCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCC
Q 021116 218 FLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPL 271 (317)
Q Consensus 218 ~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~ 271 (317)
... ...+||.|++...... ..+.+++ .|++||++++-...
T Consensus 139 g~~-------~~~pfD~Iiv~~a~~~-ip~~l~~------qL~~gGrLv~pv~~ 178 (215)
T d1jg1a_ 139 GFP-------PKAPYDVIIVTAGAPK-IPEPLIE------QLKIGGKLIIPVGS 178 (215)
T ss_dssp CCG-------GGCCEEEEEECSBBSS-CCHHHHH------TEEEEEEEEEEECS
T ss_pred CCc-------ccCcceeEEeeccccc-CCHHHHH------hcCCCCEEEEEEcc
Confidence 432 2378999999753321 2233333 58999999986543
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.13 E-value=6.5e-11 Score=103.71 Aligned_cols=105 Identities=12% Similarity=-0.013 Sum_probs=78.4
Q ss_pred CCCCeEEEECCCcchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF 232 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~-Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~f 232 (317)
.++.+|||+|||+|.....++.. +..+|+|||+++.++ +.|+++++..+ ++.++.+|+.+.... ......+
T Consensus 55 kpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i-~~a~~~a~~~~---ni~~i~~d~~~~~~~----~~~~~~v 126 (209)
T d1nt2a_ 55 RGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPF-EKLLELVRERN---NIIPLLFDASKPWKY----SGIVEKV 126 (209)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHH-HHHHHHHHHCS---SEEEECSCTTCGGGT----TTTCCCE
T ss_pred CCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHH-HHHHHHhhccC---CceEEEeeccCcccc----ccccceE
Confidence 46899999999999998877654 445899999999999 99999988764 488999988764221 1123468
Q ss_pred cEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 233 DYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 233 DlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
|+|+.|.++. .+....+..+. +.|+|||++++..
T Consensus 127 d~v~~~~~~~-~~~~~~l~~~~--~~LkpgG~l~i~~ 160 (209)
T d1nt2a_ 127 DLIYQDIAQK-NQIEILKANAE--FFLKEKGEVVIMV 160 (209)
T ss_dssp EEEEECCCST-THHHHHHHHHH--HHEEEEEEEEEEE
T ss_pred EEEEecccCh-hhHHHHHHHHH--HHhccCCeEEEEE
Confidence 8888886543 34455555554 5899999998764
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.13 E-value=6.2e-11 Score=105.81 Aligned_cols=103 Identities=14% Similarity=0.078 Sum_probs=78.1
Q ss_pred CCCeEEEECCCcchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
..++|||+|||+|.+++.++++. ..+++++|+ +.++ +.+++++...++.++++++.+|+.+.. ..+||
T Consensus 80 ~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~-~~a~~~~~~~~~~~rv~~~~~D~~~~~---------~~~~D 148 (253)
T d1tw3a2 80 NVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTV-DTARSYLKDEGLSDRVDVVEGDFFEPL---------PRKAD 148 (253)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHH-HHHHHHHHHTTCTTTEEEEECCTTSCC---------SSCEE
T ss_pred cCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHH-HHHHHHHHHhhcccchhhccccchhhc---------ccchh
Confidence 45799999999999999988764 357999998 6687 999999999999899999999976532 35799
Q ss_pred EEEECCCCCCccHH---HHHHHHHHcCCcCCCeEEEEEeC
Q 021116 234 YMSVTPPYTAVDYE---VLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 234 lV~~dPPy~~~~~~---~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
+|++.--.+...-+ .+++.+. +.|+|||++++...
T Consensus 149 ~v~~~~vlh~~~d~~~~~~L~~~~--~~LkPGG~l~i~e~ 186 (253)
T d1tw3a2 149 AIILSFVLLNWPDHDAVRILTRCA--EALEPGGRILIHER 186 (253)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHH--HTEEEEEEEEEEEC
T ss_pred heeeccccccCCchhhHHHHHHHH--HhcCCCcEEEEEec
Confidence 99986332211112 3445444 58999999887643
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.12 E-value=1.1e-10 Score=103.68 Aligned_cols=125 Identities=13% Similarity=0.063 Sum_probs=87.6
Q ss_pred CCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCc
Q 021116 130 RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDV 207 (317)
Q Consensus 130 rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~-G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~ 207 (317)
.|..+.+..++.+-+.... ..+|.+|||+|||+|..+..++.. | ..+|++||+++.++ +.++++++..+ +
T Consensus 52 ~p~rSKlaa~i~~~l~~l~----i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l-~~a~~~a~~~~---~ 123 (227)
T d1g8aa_ 52 NPNRSKLGAAIMNGLKNFP----IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVL-RELVPIVEERR---N 123 (227)
T ss_dssp CTTTCHHHHHHHTTCCCCC----CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHH-HHHHHHHSSCT---T
T ss_pred CCCccHHHHHHHccccccc----cCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHH-HHHHHHHHhcC---C
Confidence 4545566666654443211 147899999999999999988764 4 35899999999999 99999987654 3
Q ss_pred eEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 208 SSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 208 v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
+..+..|+...... ......+|+|+.|.++. .+....++.+. +.|+|||++++..
T Consensus 124 ~~~i~~d~~~~~~~----~~~~~~vD~i~~d~~~~-~~~~~~l~~~~--~~LkpgG~lvi~~ 178 (227)
T d1g8aa_ 124 IVPILGDATKPEEY----RALVPKVDVIFEDVAQP-TQAKILIDNAE--VYLKRGGYGMIAV 178 (227)
T ss_dssp EEEEECCTTCGGGG----TTTCCCEEEEEECCCST-THHHHHHHHHH--HHEEEEEEEEEEE
T ss_pred ceEEEEECCCcccc----cccccceEEEEEEcccc-chHHHHHHHHH--HhcccCCeEEEEE
Confidence 66777887543211 12346799999998754 34445555543 4899999998864
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=99.09 E-value=8.6e-11 Score=108.47 Aligned_cols=105 Identities=13% Similarity=0.083 Sum_probs=76.6
Q ss_pred CCCCeEEEECCCcchHHHHHHHc----C--CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcC
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISR----G--CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~----G--a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~ 227 (317)
.++.+|||+|||+|.+.+++..+ + ..+++|+|+|+.++ +.|+.|+...+.. ..+.++|.....
T Consensus 116 ~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~-~~a~~~~~~~~~~--~~~~~~d~~~~~-------- 184 (328)
T d2f8la1 116 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLI-SLALVGADLQRQK--MTLLHQDGLANL-------- 184 (328)
T ss_dssp CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHH-HHHHHHHHHHTCC--CEEEESCTTSCC--------
T ss_pred CCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHH-HHHHHHHHHhhhh--hhhhcccccccc--------
Confidence 35678999999999999987632 2 23699999999998 9999999988764 567778764421
Q ss_pred CCCCccEEEECCCCCCcc-------------------HHHHHHHHHHcCCcCCCeEEEEEeCC
Q 021116 228 KDGPFDYMSVTPPYTAVD-------------------YEVLMAQISKSALVGKDSFIVVEYPL 271 (317)
Q Consensus 228 ~~~~fDlV~~dPPy~~~~-------------------~~~~l~~L~~~~lLkpgG~ivv~~~~ 271 (317)
...+||+|++||||.... +.-.++.. ..+|++||++++..+.
T Consensus 185 ~~~~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~--~~~Lk~~G~~~~I~p~ 245 (328)
T d2f8la1 185 LVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQG--MRYTKPGGYLFFLVPD 245 (328)
T ss_dssp CCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHH--HHTEEEEEEEEEEEEG
T ss_pred ccccccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHH--HHhcCCCCceEEEecC
Confidence 246899999999996321 11123322 2489999998776653
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.07 E-value=3.9e-10 Score=98.46 Aligned_cols=106 Identities=11% Similarity=0.146 Sum_probs=82.9
Q ss_pred CCeEEEECCCcchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccE
Q 021116 156 PGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (317)
Q Consensus 156 ~~rVLDlgcGtG~l~Ieaas~G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDl 234 (317)
...|||+|||+|.+.+++++.. ...++|||+++.++ ..|.+++...+++| +.++.+|+.++...+ ...++|.
T Consensus 32 ~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v-~~a~~~~~~~~l~N-i~~~~~da~~l~~~~-----~~~~~~~ 104 (204)
T d1yzha1 32 NPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVL-SYALDKVLEVGVPN-IKLLWVDGSDLTDYF-----EDGEIDR 104 (204)
T ss_dssp CCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHH-HHHHHHHHHHCCSS-EEEEECCSSCGGGTS-----CTTCCSE
T ss_pred CCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHH-HHHHHhhhhhcccc-ceeeecCHHHHhhhc-----cCCceeh
Confidence 4589999999999999987764 45799999999999 99999999999965 999999988765332 3578998
Q ss_pred EEECC--CCCCcc-------HHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 235 MSVTP--PYTAVD-------YEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 235 V~~dP--Py~~~~-------~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
|++.= |+.+.. ..+.++.+. ++|+|||.+++.++
T Consensus 105 i~i~fPdPw~K~~h~krRl~~~~~l~~~~--~~LkpgG~l~i~TD 147 (204)
T d1yzha1 105 LYLNFSDPWPKKRHEKRRLTYKTFLDTFK--RILPENGEIHFKTD 147 (204)
T ss_dssp EEEESCCCCCSGGGGGGSTTSHHHHHHHH--HHSCTTCEEEEEES
T ss_pred hcccccccccchhhhhhhhhHHHHHHHHH--HhCCCCcEEEEEEC
Confidence 88743 343321 256677765 48999999998764
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.06 E-value=2.9e-10 Score=97.31 Aligned_cols=95 Identities=18% Similarity=0.174 Sum_probs=71.3
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccE
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDl 234 (317)
++.+|||+|||+|.++..+ .++++||.++.++ +.++++ +++++++|+.+. +..+++||+
T Consensus 36 ~~~~vLDiGcG~G~~~~~~-----~~~~giD~s~~~~-~~a~~~--------~~~~~~~d~~~l-------~~~~~~fD~ 94 (208)
T d1vlma_ 36 PEGRGVEIGVGTGRFAVPL-----KIKIGVEPSERMA-EIARKR--------GVFVLKGTAENL-------PLKDESFDF 94 (208)
T ss_dssp CSSCEEEETCTTSTTHHHH-----TCCEEEESCHHHH-HHHHHT--------TCEEEECBTTBC-------CSCTTCEEE
T ss_pred CCCeEEEECCCCccccccc-----ceEEEEeCChhhc-cccccc--------cccccccccccc-------ccccccccc
Confidence 4668999999999988655 2479999999999 888764 268899998764 234578999
Q ss_pred EEECCCC-CCccHHHHHHHHHHcCCcCCCeEEEEEeCCC
Q 021116 235 MSVTPPY-TAVDYEVLMAQISKSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 235 V~~dPPy-~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~ 272 (317)
|++.--. +..+....++.+. ++|+|||.+++.....
T Consensus 95 I~~~~~l~h~~d~~~~l~~~~--~~L~pgG~l~i~~~~~ 131 (208)
T d1vlma_ 95 ALMVTTICFVDDPERALKEAY--RILKKGGYLIVGIVDR 131 (208)
T ss_dssp EEEESCGGGSSCHHHHHHHHH--HHEEEEEEEEEEEECS
T ss_pred cccccccccccccccchhhhh--hcCCCCceEEEEecCC
Confidence 9986322 1235566777665 4899999999887543
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.06 E-value=6.8e-10 Score=99.98 Aligned_cols=97 Identities=10% Similarity=0.069 Sum_probs=73.6
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGC-SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF 232 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga-~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~f 232 (317)
.++.+|||+|||+|.++..++..+. .++++||+++.++ +.|+++. .+++++++|+.+. +..+++|
T Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~-~~a~~~~------~~~~~~~~d~~~l-------~~~~~sf 148 (268)
T d1p91a_ 83 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAI-KAAAKRY------PQVTFCVASSHRL-------PFSDTSM 148 (268)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHH-HHHHHHC------TTSEEEECCTTSC-------SBCTTCE
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhh-hhhhccc------ccccceeeehhhc-------cCCCCCE
Confidence 4678999999999999988887653 4799999999999 8887653 2478999998763 3456889
Q ss_pred cEEEEC-CCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCCCC
Q 021116 233 DYMSVT-PPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRT 273 (317)
Q Consensus 233 DlV~~d-PPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~~ 273 (317)
|+|+.. .|. .+.+ +. ++|+|||++++..+...
T Consensus 149 D~v~~~~~~~---~~~e----~~--rvLkpgG~l~~~~p~~~ 181 (268)
T d1p91a_ 149 DAIIRIYAPC---KAEE----LA--RVVKPGGWVITATPGPR 181 (268)
T ss_dssp EEEEEESCCC---CHHH----HH--HHEEEEEEEEEEEECTT
T ss_pred EEEeecCCHH---HHHH----HH--HHhCCCcEEEEEeeCCc
Confidence 999963 332 2332 32 47999999999876443
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.04 E-value=3.9e-10 Score=100.14 Aligned_cols=125 Identities=14% Similarity=0.045 Sum_probs=85.3
Q ss_pred CCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCce
Q 021116 130 RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVS 208 (317)
Q Consensus 130 rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~v 208 (317)
.|-.+.++.++..-+.... ..++.+|||+|||+|..+..++..+ ...|+|||+++.++ +.++++++..+ ++
T Consensus 53 ~p~rsklaA~i~~gl~~l~----ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i-~~a~~~a~~~~---ni 124 (230)
T d1g8sa_ 53 NPNKSKLAAAIIKGLKVMP----IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIM-RELLDACAERE---NI 124 (230)
T ss_dssp CTTTCHHHHHHHTTCCCCC----CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHH-HHHHHHTTTCT---TE
T ss_pred CCCccHHHHHHHhhHHhCC----CCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHH-HHHHHHHhhhc---cc
Confidence 5666677766655443211 1468999999999999999887754 45899999999999 99988876543 46
Q ss_pred EEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 209 SIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 209 ~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
..+.+|+....... .....+|+++.+-.+ ..+.+..+..+. +.|+|||++++..
T Consensus 125 ~~i~~d~~~~~~~~----~~~~~v~~i~~~~~~-~~~~~~~l~~~~--r~LKpgG~~~i~~ 178 (230)
T d1g8sa_ 125 IPILGDANKPQEYA----NIVEKVDVIYEDVAQ-PNQAEILIKNAK--WFLKKGGYGMIAI 178 (230)
T ss_dssp EEEECCTTCGGGGT----TTCCCEEEEEECCCS-TTHHHHHHHHHH--HHEEEEEEEEEEE
T ss_pred ceEEEeeccCcccc----cccceeEEeeccccc-hHHHHHHHHHHH--HhcccCceEEEEe
Confidence 77888877654321 112345566666432 234455555543 5899999988864
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.01 E-value=9.5e-10 Score=105.35 Aligned_cols=120 Identities=15% Similarity=0.073 Sum_probs=79.9
Q ss_pred hHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHhHHHhC-------C
Q 021116 133 MEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTG-------F 204 (317)
Q Consensus 133 ~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas-~Ga~~V~aVDin~~al~~~ar~N~~~~g-------l 204 (317)
.-.+...+++.+.. .++.+|||||||+|.+.+.++. .|+++|+|||+++.++ +.|+++++.++ .
T Consensus 201 ~~~~i~~Il~~l~L-------kpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i-~~Ak~~~~e~~~~~~~~g~ 272 (406)
T d1u2za_ 201 LPNFLSDVYQQCQL-------KKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDAS-DLTILQYEELKKRCKLYGM 272 (406)
T ss_dssp CHHHHHHHHHHTTC-------CTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHH-HHHHHHHHHHHHHHHHTTB
T ss_pred CHHHHHHHHHHhCC-------CCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHH-HHHHHHHHHHhhhhhhhcc
Confidence 34455556666543 4789999999999999998765 4777899999999998 99999987643 1
Q ss_pred C-CceEE-EEecHHH---HHHHHhhhcCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 205 L-DVSSI-HTVRVET---FLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 205 ~-~~v~i-i~gD~~~---~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
. ..+.+ +.++..+ +...+ ...|+|+++-=.....+...+..+. +.|+|||+|++..
T Consensus 273 ~~~~~~~~~~~~f~~~~~~d~~~-------~~adVV~inn~~f~~~l~~~L~ei~--r~LKPGGrIVs~~ 333 (406)
T d1u2za_ 273 RLNNVEFSLKKSFVDNNRVAELI-------PQCDVILVNNFLFDEDLNKKVEKIL--QTAKVGCKIISLK 333 (406)
T ss_dssp CCCCEEEEESSCSTTCHHHHHHG-------GGCSEEEECCTTCCHHHHHHHHHHH--TTCCTTCEEEESS
T ss_pred ccccceeeeeechhhcccccccc-------ccceEEEEecccCchHHHHHHHHHH--HhcCCCcEEEEec
Confidence 1 11222 2333321 11111 4689999974222234455555554 6999999998753
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.98 E-value=3.3e-10 Score=99.64 Aligned_cols=111 Identities=12% Similarity=0.038 Sum_probs=72.7
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHH-----------
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA----------- 222 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~----------- 222 (317)
.++.+|||+|||+|..++.+++.++.+|+++|+++.++ +.|+++++..+... ...+...+....
T Consensus 50 ~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i-~~a~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 124 (257)
T d2a14a1 50 LQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNR-EELEKWLKKEPGAY----DWTPAVKFACELEGNSGRWEEKE 124 (257)
T ss_dssp CCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHH-HHHHHHHHTCTTCC----CCHHHHHHHHHHTTCGGGHHHHH
T ss_pred CCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHH-HHHHHHHhhccccc----hhhhHHHHHHHhccccchHHHHH
Confidence 46789999999999999877777777899999999999 99999988665421 111111110000
Q ss_pred -------------------hhhcCCCCCccEEEECCCC-----CCccHHHHHHHHHHcCCcCCCeEEEEEeCC
Q 021116 223 -------------------EQFVGKDGPFDYMSVTPPY-----TAVDYEVLMAQISKSALVGKDSFIVVEYPL 271 (317)
Q Consensus 223 -------------------~~~~~~~~~fDlV~~dPPy-----~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~ 271 (317)
...+...+.||+|++.--. ...++...++.+. ++|+|||++++....
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~--~~LkpGG~li~~~~~ 195 (257)
T d2a14a1 125 EKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLA--SLLKPGGHLVTTVTL 195 (257)
T ss_dssp HHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHH--TTEEEEEEEEEEEES
T ss_pred HHHhhhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHH--hccCCCcEEEEEEec
Confidence 0012345689999974211 0012344555554 799999999987543
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.95 E-value=2.1e-09 Score=92.95 Aligned_cols=119 Identities=13% Similarity=0.056 Sum_probs=86.2
Q ss_pred HHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHH
Q 021116 138 GAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVE 216 (317)
Q Consensus 138 ~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~-Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~ 216 (317)
+.+.+++.. .++..+||++||+|..+..++.+ ...+|+++|.|++++ +.|+++++.++ +++.+++++..
T Consensus 13 ~evi~~l~~-------~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l-~~a~~~l~~~~--~r~~~~~~~f~ 82 (192)
T d1m6ya2 13 REVIEFLKP-------EDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVL-RIAEEKLKEFS--DRVSLFKVSYR 82 (192)
T ss_dssp HHHHHHHCC-------CTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHH-HHHHHHTGGGT--TTEEEEECCGG
T ss_pred HHHHHhhCC-------CCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHH-HHHHHhhcccc--ccccchhHHHh
Confidence 345577765 47889999999999999887764 345899999999999 99999998765 56999998876
Q ss_pred HHHHHHhhhcCCCCCccEEEECCCCCCc----------cHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 217 TFLERAEQFVGKDGPFDYMSVTPPYTAV----------DYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 217 ~~l~~~~~~~~~~~~fDlV~~dPPy~~~----------~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
++...... ...++||.|++|-.+... ...+.++. ...+|++||.+++..-
T Consensus 83 ~~~~~~~~--~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~--a~~~Lk~gG~l~ii~f 142 (192)
T d1m6ya2 83 EADFLLKT--LGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKK--AEDLLNPGGRIVVISF 142 (192)
T ss_dssp GHHHHHHH--TTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHH--GGGGEEEEEEEEEEES
T ss_pred hHHHHHHH--cCCCCcceeeeccchhHhhhhhhhccchhHHHHHHH--HHHhcCCCCeeeeecc
Confidence 65433221 124689999999765321 12233333 2469999999876553
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.94 E-value=3.6e-10 Score=97.29 Aligned_cols=87 Identities=17% Similarity=0.124 Sum_probs=65.5
Q ss_pred CChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHhHHHhCCCCce
Q 021116 131 PMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVS 208 (317)
Q Consensus 131 pt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~--Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v 208 (317)
.|...+.+.+.+.+.. .++.+|||+|||+|.+.+.+..+ ....++++|+++.++ ++++ +.
T Consensus 2 ~TP~~i~~~m~~l~~~-------~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~-~~~~----------~~ 63 (223)
T d2ih2a1 2 ETPPEVVDFMVSLAEA-------PRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKAL-DLPP----------WA 63 (223)
T ss_dssp CCCHHHHHHHHHHCCC-------CTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTC-CCCT----------TE
T ss_pred CCCHHHHHHHHHhcCC-------CCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHH-hhcc----------cc
Confidence 3566788888887754 46889999999999998877653 345799999999876 5432 24
Q ss_pred EEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCC
Q 021116 209 SIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTA 243 (317)
Q Consensus 209 ~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~ 243 (317)
.++++|..... ....||+|+.||||..
T Consensus 64 ~~~~~~~~~~~--------~~~~fd~ii~npP~~~ 90 (223)
T d2ih2a1 64 EGILADFLLWE--------PGEAFDLILGNPPYGI 90 (223)
T ss_dssp EEEESCGGGCC--------CSSCEEEEEECCCCCC
T ss_pred eeeeeehhccc--------cccccceecccCcccc
Confidence 56788865542 2478999999999964
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.94 E-value=1.7e-09 Score=95.58 Aligned_cols=101 Identities=16% Similarity=0.110 Sum_probs=73.7
Q ss_pred CCCCeEEEECCCcchHHHHHHHc----CC---CEEEEEeCCHHHHHHHHHHhHHHh-----CCCCceEEEEecHHHHHHH
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISR----GC---SEVHFVEMDPWVVSNVLIPNLEWT-----GFLDVSSIHTVRVETFLER 221 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~----Ga---~~V~aVDin~~al~~~ar~N~~~~-----gl~~~v~ii~gD~~~~l~~ 221 (317)
.++.+|||+|||||..+..+++. |. .+|++||++++.+ +.|++|+... ++ +++.++.+|..+....
T Consensus 79 ~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~-~~a~~~l~~~~~~~~~~-~nv~~~~~d~~~~~~~ 156 (223)
T d1r18a_ 79 KPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELV-RRSKANLNTDDRSMLDS-GQLLIVEGDGRKGYPP 156 (223)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHH-HHHHHHHHHHHHHHHHH-TSEEEEESCGGGCCGG
T ss_pred CCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHH-HHHHHhhhhcchhhcCc-cEEEEEeccccccccc
Confidence 46899999999999998655432 32 4799999999998 9999997654 34 3589999998764321
Q ss_pred HhhhcCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 222 AEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 222 ~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
..+||.|+++.... ...+ .+.+ .|++||++++-..
T Consensus 157 -------~~~fD~Iiv~~a~~--~~p~---~l~~--~Lk~gG~lV~pvg 191 (223)
T d1r18a_ 157 -------NAPYNAIHVGAAAP--DTPT---ELIN--QLASGGRLIVPVG 191 (223)
T ss_dssp -------GCSEEEEEECSCBS--SCCH---HHHH--TEEEEEEEEEEES
T ss_pred -------ccceeeEEEEeech--hchH---HHHH--hcCCCcEEEEEEe
Confidence 36899999986432 2222 2222 6899999998654
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=98.94 E-value=1.3e-09 Score=97.71 Aligned_cols=103 Identities=13% Similarity=0.009 Sum_probs=77.5
Q ss_pred CCCeEEEECCCcchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
...+|||+|||+|.++.+++++. ..+++++|+ ++++ +.++++++..++.++++++.+|..+.+ ...||
T Consensus 81 ~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~-~~a~~~~~~~~~~~ri~~~~~d~~~~~---------p~~~D 149 (256)
T d1qzza2 81 AVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPA-ERARRRFADAGLADRVTVAEGDFFKPL---------PVTAD 149 (256)
T ss_dssp TCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHH-HHHHHHHHHTTCTTTEEEEECCTTSCC---------SCCEE
T ss_pred cCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHH-HHHHHHHhhcCCcceeeeeeeeccccc---------cccch
Confidence 35789999999999999988764 347999998 7788 999999999999999999999976531 35699
Q ss_pred EEEECCCCCCccHH---HHHHHHHHcCCcCCCeEEEEEeC
Q 021116 234 YMSVTPPYTAVDYE---VLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 234 lV~~dPPy~~~~~~---~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
+|++.--.+...-+ .+++.+. +.|+|||++++...
T Consensus 150 ~v~~~~vLh~~~d~~~~~lL~~i~--~~LkpgG~llI~d~ 187 (256)
T d1qzza2 150 VVLLSFVLLNWSDEDALTILRGCV--RALEPGGRLLVLDR 187 (256)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHH--HHEEEEEEEEEEEC
T ss_pred hhhccccccccCcHHHHHHHHHHH--hhcCCcceeEEEEe
Confidence 99985332211223 3344443 58999998887643
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=98.93 E-value=1.1e-09 Score=104.93 Aligned_cols=124 Identities=18% Similarity=0.119 Sum_probs=89.4
Q ss_pred CCCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHc----CC----------CEEEEEeCCHHHHHHH
Q 021116 129 VRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR----GC----------SEVHFVEMDPWVVSNV 194 (317)
Q Consensus 129 ~rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~----Ga----------~~V~aVDin~~al~~~ 194 (317)
-..|...+.+.|.+++.. ..+.+|+|++||||.+.+++..+ +. ..++++|+++.+. .+
T Consensus 143 ~f~TP~~Iv~~mv~ll~~-------~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~-~l 214 (425)
T d2okca1 143 QYFTPRPLIQAMVDCINP-------QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVV-TL 214 (425)
T ss_dssp GGCCCHHHHHHHHHHHCC-------CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHH-HH
T ss_pred hhccchhhhHhhheeccC-------cccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHH-HH
Confidence 345667788888888865 35789999999999999987652 11 2399999999998 99
Q ss_pred HHHhHHHhCCCC-ceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCcc------------------HHHHHHHHHH
Q 021116 195 LIPNLEWTGFLD-VSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVD------------------YEVLMAQISK 255 (317)
Q Consensus 195 ar~N~~~~gl~~-~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~------------------~~~~l~~L~~ 255 (317)
|+.|+...|... ...+..+|..+.. ....||+|++||||+... ....+....
T Consensus 215 a~~n~~l~g~~~~~~~i~~~d~l~~~--------~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~- 285 (425)
T d2okca1 215 ASMNLYLHGIGTDRSPIVCEDSLEKE--------PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMM- 285 (425)
T ss_dssp HHHHHHHTTCCSSCCSEEECCTTTSC--------CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHH-
T ss_pred HHhhhhhcCCccccceeecCchhhhh--------cccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHH-
Confidence 999999888752 3567788865421 246799999999996420 111233332
Q ss_pred cCCcCCCeEEEEEeC
Q 021116 256 SALVGKDSFIVVEYP 270 (317)
Q Consensus 256 ~~lLkpgG~ivv~~~ 270 (317)
.+|++||++.+..+
T Consensus 286 -~~Lk~~G~~~iI~p 299 (425)
T d2okca1 286 -LMLKTGGRAAVVLP 299 (425)
T ss_dssp -HHEEEEEEEEEEEE
T ss_pred -HhcCCCCeEEEEec
Confidence 37899998776654
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.91 E-value=4.3e-09 Score=95.72 Aligned_cols=107 Identities=18% Similarity=0.177 Sum_probs=83.4
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHh---------CCCCceEEEEecHHHHHHHHhh
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWT---------GFLDVSSIHTVRVETFLERAEQ 224 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~---------gl~~~v~ii~gD~~~~l~~~~~ 224 (317)
.+.++||-+|+|.|....++++.+..+|++||+|+..+ +.|++-+..+ .-.++++++.+|+..++..
T Consensus 71 ~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi-~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~--- 146 (276)
T d1mjfa_ 71 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVI-MVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN--- 146 (276)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHH-HHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH---
T ss_pred CCCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHH-HHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhc---
Confidence 45789999999999999988887777999999999999 9998755322 2246899999999999864
Q ss_pred hcCCCCCccEEEECCCCCCcc-----HHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 225 FVGKDGPFDYMSVTPPYTAVD-----YEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 225 ~~~~~~~fDlV~~dPPy~~~~-----~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
.++||+||+|.+-..+. -.+.++.+. +.|+|+|++++...
T Consensus 147 ----~~~yDvIi~D~~~~~~~~~~L~t~eF~~~~~--~~L~~~Gv~v~q~~ 191 (276)
T d1mjfa_ 147 ----NRGFDVIIADSTDPVGPAKVLFSEEFYRYVY--DALNNPGIYVTQAG 191 (276)
T ss_dssp ----CCCEEEEEEECCCCC-----TTSHHHHHHHH--HHEEEEEEEEEEEE
T ss_pred ----cCCCCEEEEeCCCCCCCcccccCHHHHHhhH--hhcCCCceEEEecC
Confidence 36899999997643221 144556665 47999999998764
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.90 E-value=4.5e-09 Score=94.08 Aligned_cols=113 Identities=13% Similarity=0.166 Sum_probs=77.3
Q ss_pred CCeEEEECCCcchHHHHHHHc------CC-CEEEEEeCCHHHHHHHHHHhHHHhCCCCce--EEEEecHHHHHHHHhhhc
Q 021116 156 PGRWLDLYSGTGSVGIEAISR------GC-SEVHFVEMDPWVVSNVLIPNLEWTGFLDVS--SIHTVRVETFLERAEQFV 226 (317)
Q Consensus 156 ~~rVLDlgcGtG~l~Ieaas~------Ga-~~V~aVDin~~al~~~ar~N~~~~gl~~~v--~ii~gD~~~~l~~~~~~~ 226 (317)
..+|||+|||+|.++..++.. +. .++++||.|+.++ +.++++++.......+ .+...++.++..... .+
T Consensus 41 ~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 118 (280)
T d1jqea_ 41 EIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQI-AKYKELVAKISNLENVKFAWHKETSSEYQSRML-EK 118 (280)
T ss_dssp EEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHH-HHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHT-TS
T ss_pred CCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHH-HHHHHHHhhccccccccccchhhhhhhhcchhc-cc
Confidence 348999999999988765432 21 2589999999999 9999987654322333 455666665543321 12
Q ss_pred CCCCCccEEEECCC-CCCccHHHHHHHHHHcCCcCCCeEEEEEeCCC
Q 021116 227 GKDGPFDYMSVTPP-YTAVDYEVLMAQISKSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 227 ~~~~~fDlV~~dPP-y~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~ 272 (317)
...++||+|++--- ++..+....++.+. ++|+|||++++.....
T Consensus 119 ~~~~~fD~I~~~~~l~~~~d~~~~l~~l~--~~LkpgG~l~i~~~~~ 163 (280)
T d1jqea_ 119 KELQKWDFIHMIQMLYYVKDIPATLKFFH--SLLGTNAKMLIIVVSG 163 (280)
T ss_dssp SSCCCEEEEEEESCGGGCSCHHHHHHHHH--HTEEEEEEEEEEEECT
T ss_pred CCCCceeEEEEccceecCCCHHHHHHHHH--hhCCCCCEEEEEEecC
Confidence 34578999998533 23346777888876 4999999988776533
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=98.85 E-value=1.4e-09 Score=97.85 Aligned_cols=80 Identities=19% Similarity=0.160 Sum_probs=67.6
Q ss_pred CCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCC--------CceEEEEecHHHHHHHHhhhcC
Q 021116 156 PGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFL--------DVSSIHTVRVETFLERAEQFVG 227 (317)
Q Consensus 156 ~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~--------~~v~ii~gD~~~~l~~~~~~~~ 227 (317)
..+|||+.||.|.-++.+++.|+ +|++||.|+... .++++|++..... ++++++++|..+++...
T Consensus 89 ~~~VlD~TaGlG~Da~vlA~~G~-~V~~iEr~p~l~-~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~----- 161 (250)
T d2oyra1 89 LPDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVA-ALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDI----- 161 (250)
T ss_dssp CCCEEETTCTTCHHHHHHHHHTC-CEEEEECCHHHH-HHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTC-----
T ss_pred CCEEEECCCcccHHHHHHHhCCC-EEEEEccCHHHH-HHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhcc-----
Confidence 34899999999999999999997 599999999997 8999888765421 36899999999987543
Q ss_pred CCCCccEEEECCCCCC
Q 021116 228 KDGPFDYMSVTPPYTA 243 (317)
Q Consensus 228 ~~~~fDlV~~dPPy~~ 243 (317)
.+.||+|++||||..
T Consensus 162 -~~~~DvIYlDPMFp~ 176 (250)
T d2oyra1 162 -TPRPQVVYLDPMFPH 176 (250)
T ss_dssp -SSCCSEEEECCCCCC
T ss_pred -CCCCCEEEECCCCcc
Confidence 367999999999953
|
| >d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase AviRa domain: rRNA methyltransferase AviRa species: Streptomyces viridochromogenes [TaxId: 1938]
Probab=98.83 E-value=4.6e-09 Score=94.35 Aligned_cols=157 Identities=12% Similarity=-0.026 Sum_probs=97.5
Q ss_pred CChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCC--------------------------------
Q 021116 131 PMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGC-------------------------------- 178 (317)
Q Consensus 131 pt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga-------------------------------- 178 (317)
+....++.+++..+....+ ...+..++|+|||||++.|||+....
T Consensus 29 ~~~~~Laa~il~~al~l~~---w~~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~ 105 (249)
T d1o9ga_ 29 AFPVRLATEIFQRALARLP---GDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLT 105 (249)
T ss_dssp CCCHHHHHHHHHHHHHTSS---CCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHH
T ss_pred CcchHHHHHHHHHHhhhhc---CCCCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHH
Confidence 3446677776665422211 12356799999999999999764311
Q ss_pred ---------CEEEEEeCCHHHHHHHH---HHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCc--
Q 021116 179 ---------SEVHFVEMDPWVVSNVL---IPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAV-- 244 (317)
Q Consensus 179 ---------~~V~aVDin~~al~~~a---r~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~-- 244 (317)
.++++.|+|+.++ +.| ++|++..|+.+.+++.+.|+++...... . .....+++|++||||+..
T Consensus 106 ~~~~~~~~~~~i~G~D~d~~ai-~~A~~~r~n~~~Agl~~~i~i~~~d~f~~~~~~~-~-~~~~~~GlIVtNPPYGERl~ 182 (249)
T d1o9ga_ 106 ARELERREQSERFGKPSYLEAA-QAARRLRERLTAEGGALPCAIRTADVFDPRALSA-V-LAGSAPDVVLTDLPYGERTH 182 (249)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHH-HHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHH-H-HTTCCCSEEEEECCGGGSSS
T ss_pred HHhccccccCCccccccCHHHH-HHHHHHHHHHHHcCCCceeeeeecchhccCcchh-c-cCCCCCCEEEeCCCcccccc
Confidence 1356889999998 888 5799999999889999999864321110 0 013567999999999853
Q ss_pred --------cHHHHHHHHHHcCCcCCCeEEEEEeCCCCCccccCCCeEEEEEeecCceEEEEE
Q 021116 245 --------DYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDRRFGRTHLAIY 298 (317)
Q Consensus 245 --------~~~~~l~~L~~~~lLkpgG~ivv~~~~~~~l~~~~~~~~~~~~r~yG~~~l~~~ 298 (317)
.+......+.. .+.....+++.. ..+.+. ..++.-.+..+.|.-.+.++
T Consensus 183 ~~~~~~~~~~~~~~~~l~~--~~p~~s~~~it~-~~~kl~--~~~lr~~~~~~~g~r~~~~~ 239 (249)
T d1o9ga_ 183 WEGQVPGQPVAGLLRSLAS--ALPAHAVIAVTD-RSRKIP--VAPVKALERLKIGTRSAVMV 239 (249)
T ss_dssp SSSCCCHHHHHHHHHHHHH--HSCTTCEEEEEE-SSSCCC--CTTSCCSEEEEETTEEEEEE
T ss_pred ccccchHHHHHHHHHHHHc--cCCCCcEEEEeC-chhhhh--ccCccccceeeecCcceEEE
Confidence 13444444442 454444444443 334433 35565555566676555544
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.82 E-value=1.8e-08 Score=92.15 Aligned_cols=83 Identities=8% Similarity=0.108 Sum_probs=66.4
Q ss_pred CCCCeEEEECCCcchHHHHHHH--cCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCC
Q 021116 154 LRPGRWLDLYSGTGSVGIEAIS--RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGP 231 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas--~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~ 231 (317)
.++.+|||+|||.|+-++.++. .+..+|+++|+++..+ +.+++|++++|+.+ +.+...|...+.... ...+.
T Consensus 93 ~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~-~~l~~~l~r~g~~~-~~~~~~d~~~~~~~~----~~~~~ 166 (293)
T d2b9ea1 93 PPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRL-ASMATLLARAGVSC-CELAEEDFLAVSPSD----PRYHE 166 (293)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHH-HHHHHHHHHTTCCS-EEEEECCGGGSCTTC----GGGTT
T ss_pred CccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHH-HHHHHHHHhcCccc-eeeeehhhhhhcccc----cccce
Confidence 4689999999999998876554 3456899999999998 99999999999965 889999876543211 01257
Q ss_pred ccEEEECCCCC
Q 021116 232 FDYMSVTPPYT 242 (317)
Q Consensus 232 fDlV~~dPPy~ 242 (317)
||.|++|||..
T Consensus 167 fD~VL~DaPCS 177 (293)
T d2b9ea1 167 VHYILLDPSCS 177 (293)
T ss_dssp EEEEEECCCCC
T ss_pred eeEEeecCccc
Confidence 99999999975
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=98.82 E-value=1.1e-08 Score=94.53 Aligned_cols=107 Identities=16% Similarity=0.161 Sum_probs=83.1
Q ss_pred CCCCeEEEECCCcchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHhHHHh--C--CCCceEEEEecHHHHHHHHhhhcCC
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWT--G--FLDVSSIHTVRVETFLERAEQFVGK 228 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~-Ga~~V~aVDin~~al~~~ar~N~~~~--g--l~~~v~ii~gD~~~~l~~~~~~~~~ 228 (317)
...++||.+|.|.|...-++++. +..+|++||+|+..+ +.|++++... + -.++++++.+|+.+++...
T Consensus 76 ~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi-~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~------ 148 (312)
T d1uira_ 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELV-EVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERT------ 148 (312)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHH-HHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHC------
T ss_pred CCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHH-HHHHhcCcccccCccCCCceEEEEchHHHHhhhc------
Confidence 35689999999999999988775 456899999999999 9999987542 1 1357999999999998763
Q ss_pred CCCccEEEECCC--CCCc-----cH-HHHHHHHHHcCCcCCCeEEEEEe
Q 021116 229 DGPFDYMSVTPP--YTAV-----DY-EVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 229 ~~~fDlV~~dPP--y~~~-----~~-~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
..+||+||+|++ +... .+ .+.++.+. +.|+|||++++..
T Consensus 149 ~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~--~~L~p~Gvlv~~~ 195 (312)
T d1uira_ 149 EERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVK--AHLNPGGVMGMQT 195 (312)
T ss_dssp CCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHH--HTEEEEEEEEEEE
T ss_pred CCcccEEEEeCCCcccccchhhhhhhHHHHHHHH--HhcCCCceEEEec
Confidence 478999999863 3321 11 45566665 4899999998854
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=98.76 E-value=6.4e-09 Score=102.19 Aligned_cols=127 Identities=13% Similarity=0.025 Sum_probs=85.9
Q ss_pred CCCCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHc----CC---------------CEEEEEeCCH
Q 021116 128 DVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR----GC---------------SEVHFVEMDP 188 (317)
Q Consensus 128 ~~rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~----Ga---------------~~V~aVDin~ 188 (317)
+-..|...|.+.|.+++.. ..+.+|+|++||||.+.+++... .. ..++++|+++
T Consensus 144 GqfyTP~~Iv~~mv~ll~~-------~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~ 216 (524)
T d2ar0a1 144 GQYFTPRPLIKTIIHLLKP-------QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVP 216 (524)
T ss_dssp -CCCCCHHHHHHHHHHHCC-------CTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCH
T ss_pred chhccccchhHhhhhcccC-------ccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCH
Confidence 3355777788888888865 35789999999999999877542 10 1489999999
Q ss_pred HHHHHHHHHhHHHhCCCCc----eEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCcc--------------HH-HH
Q 021116 189 WVVSNVLIPNLEWTGFLDV----SSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVD--------------YE-VL 249 (317)
Q Consensus 189 ~al~~~ar~N~~~~gl~~~----v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~--------------~~-~~ 249 (317)
.+. .+|+.|+-..|.... -.+..++....... ...+||+|+.||||+... .+ -.
T Consensus 217 ~~~-~la~~nl~l~~~~~~i~~~~~~~~~~~l~~d~~------~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~F 289 (524)
T d2ar0a1 217 GTR-RLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGE------NLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCF 289 (524)
T ss_dssp HHH-HHHHHHHHTTTCCCBGGGTBSEEESCTTSHHHH------TSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHH
T ss_pred HHH-HHHHHHHHhhcccccccccchhhhhhhhhhccc------ccccceeEEecCCccccccccchhhhccccccccHHH
Confidence 998 999999987776421 12344443322111 236799999999997421 11 12
Q ss_pred HHHHHHcCCcCCCeEEEEEeC
Q 021116 250 MAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 250 l~~L~~~~lLkpgG~ivv~~~ 270 (317)
+..+. ..|++||++.+..+
T Consensus 290 i~~~l--~~Lk~gGr~aiIlP 308 (524)
T d2ar0a1 290 MQHII--ETLHPGGRAAVVVP 308 (524)
T ss_dssp HHHHH--HHEEEEEEEEEEEE
T ss_pred HHHHH--HhccccCcEEEEEe
Confidence 33322 37899999776654
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.71 E-value=1.1e-08 Score=91.45 Aligned_cols=48 Identities=10% Similarity=0.020 Sum_probs=40.8
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHh
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWT 202 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~ 202 (317)
.++.++||+|||+|.+.+..++.+..+|+++|.++.++ +.++++++..
T Consensus 53 ~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i-~~~~~~~~~~ 100 (263)
T d2g72a1 53 VSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNR-QELGRWLQEE 100 (263)
T ss_dssp SCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHH-HHHHHHHTTC
T ss_pred CCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHH-HHHHHHHhcC
Confidence 57899999999999988765666667899999999999 9999887643
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.70 E-value=4e-08 Score=89.40 Aligned_cols=81 Identities=16% Similarity=0.181 Sum_probs=62.7
Q ss_pred CCCCeEEEECCCcchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF 232 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~f 232 (317)
.++.+|||+|||.|+=++.++..+ ..+|+++|+++..+ +.+++|+++.|+.+ +.+...|... .... ....|
T Consensus 101 ~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~-~~l~~~~~r~g~~~-~~~~~~~~~~-~~~~-----~~~~f 172 (284)
T d1sqga2 101 QNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRL-SRVYDNLKRLGMKA-TVKQGDGRYP-SQWC-----GEQQF 172 (284)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTH-HHHHHHHHHTTCCC-EEEECCTTCT-HHHH-----TTCCE
T ss_pred cccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhh-hhHhhhhhcccccc-eeeecccccc-chhc-----ccccc
Confidence 468999999999999998776643 35799999999998 99999999999865 4444444322 2111 23679
Q ss_pred cEEEECCCCC
Q 021116 233 DYMSVTPPYT 242 (317)
Q Consensus 233 DlV~~dPPy~ 242 (317)
|.|++|+|..
T Consensus 173 d~IL~DaPCS 182 (284)
T d1sqga2 173 DRILLDAPCS 182 (284)
T ss_dssp EEEEEECCCC
T ss_pred cEEEEecccc
Confidence 9999999986
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.66 E-value=9.2e-08 Score=86.97 Aligned_cols=88 Identities=18% Similarity=0.163 Sum_probs=70.5
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
.+++.|||+|+|+|.++.+++.++. +|++||+|+..+ +.+++++......++++++.+|+..+. -+.++
T Consensus 20 ~~~d~VlEIGPG~G~LT~~Ll~~~~-~v~aiE~D~~l~-~~L~~~~~~~~~~~~~~~i~~D~l~~~---------~~~~~ 88 (278)
T d1zq9a1 20 RPTDVVLEVGPGTGNMTVKLLEKAK-KVVACELDPRLV-AELHKRVQGTPVASKLQVLVGDVLKTD---------LPFFD 88 (278)
T ss_dssp CTTCEEEEECCTTSTTHHHHHHHSS-EEEEEESCHHHH-HHHHHHHTTSTTGGGEEEEESCTTTSC---------CCCCS
T ss_pred CCCCEEEEECCCchHHHHHHHhcCC-cEEEEEEccchh-HHHHHHHhhhccccchhhhHHHHhhhh---------hhhhh
Confidence 3678999999999999999988874 899999999998 999988876655567999999987652 24578
Q ss_pred EEEECCCCCCccHHHHHHHHH
Q 021116 234 YMSVTPPYTAVDYEVLMAQIS 254 (317)
Q Consensus 234 lV~~dPPy~~~~~~~~l~~L~ 254 (317)
.|+.|.||+- ...++..+.
T Consensus 89 ~vV~NLPY~I--ss~il~~~~ 107 (278)
T d1zq9a1 89 TCVANLPYQI--SSPFVFKLL 107 (278)
T ss_dssp EEEEECCGGG--HHHHHHHHH
T ss_pred hhhcchHHHH--HHHHHHHHH
Confidence 9999999963 344454443
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=98.65 E-value=2.3e-08 Score=88.75 Aligned_cols=78 Identities=17% Similarity=0.120 Sum_probs=62.4
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
.++++|||+|||+|.++..++..+ .+|++||+|+..+ +.++++.... ++++++++|+.++. .......
T Consensus 20 ~~~d~VlEIGpG~G~LT~~Ll~~~-~~v~avE~D~~l~-~~l~~~~~~~---~n~~i~~~D~l~~~-------~~~~~~~ 87 (235)
T d1qama_ 20 NEHDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLC-KTTENKLVDH---DNFQVLNKDILQFK-------FPKNQSY 87 (235)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHS-SEEEEECSCHHHH-HHHHHHTTTC---CSEEEECCCGGGCC-------CCSSCCC
T ss_pred CCCCeEEEECCCchHHHHHHHhCc-CceEEEeeccchH-HHHHHHhhcc---cchhhhhhhhhhcc-------ccccccc
Confidence 468999999999999999988876 4799999999998 8888765432 46999999998752 1123345
Q ss_pred EEEECCCCCC
Q 021116 234 YMSVTPPYTA 243 (317)
Q Consensus 234 lV~~dPPy~~ 243 (317)
.|+.|.||+-
T Consensus 88 ~vv~NLPYnI 97 (235)
T d1qama_ 88 KIFGNIPYNI 97 (235)
T ss_dssp EEEEECCGGG
T ss_pred eeeeeehhhh
Confidence 7889999963
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=98.62 E-value=7.1e-08 Score=87.45 Aligned_cols=109 Identities=16% Similarity=0.131 Sum_probs=84.3
Q ss_pred CCCCeEEEECCCcchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHhHHHh-CC--CCceEEEEecHHHHHHHHhhhcCCC
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWT-GF--LDVSSIHTVRVETFLERAEQFVGKD 229 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~-Ga~~V~aVDin~~al~~~ar~N~~~~-gl--~~~v~ii~gD~~~~l~~~~~~~~~~ 229 (317)
...++||-+|-|.|..+-++++. +..+|+.||+|+..+ +.|++....+ +. +.+++++.+|+..++... +
T Consensus 74 ~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi-~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~------~ 146 (274)
T d1iy9a_ 74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVI-EYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKS------E 146 (274)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHH-HHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTC------C
T ss_pred CCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHH-HHHHHhChhhcccccCCCeEEEechHHHHHhhc------C
Confidence 35689999999999999998874 667999999999999 9999876542 21 357999999999998653 4
Q ss_pred CCccEEEECCCCCCc----c-HHHHHHHHHHcCCcCCCeEEEEEeCC
Q 021116 230 GPFDYMSVTPPYTAV----D-YEVLMAQISKSALVGKDSFIVVEYPL 271 (317)
Q Consensus 230 ~~fDlV~~dPPy~~~----~-~~~~l~~L~~~~lLkpgG~ivv~~~~ 271 (317)
.+||+|++|++-..+ . -.+..+.+. +.|+|+|++++....
T Consensus 147 ~~yDvIi~D~~~p~~~~~~L~t~eFy~~~~--~~L~~~Gv~v~q~~s 191 (274)
T d1iy9a_ 147 NQYDVIMVDSTEPVGPAVNLFTKGFYAGIA--KALKEDGIFVAQTDN 191 (274)
T ss_dssp SCEEEEEESCSSCCSCCCCCSTTHHHHHHH--HHEEEEEEEEEECCC
T ss_pred CCCCEEEEcCCCCCCcchhhccHHHHHHHH--hhcCCCceEEEecCC
Confidence 789999999753221 1 244555555 379999999987643
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.60 E-value=9.6e-08 Score=88.03 Aligned_cols=80 Identities=15% Similarity=0.057 Sum_probs=64.7
Q ss_pred CCCCeEEEECCCcchHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCC
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGP 231 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~--Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~ 231 (317)
.++.+|||+|||.|.=+..++.. +...++++|.++..+ +.+++|+++.|+.+ +.++..|...+.. ....
T Consensus 115 ~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~-~~l~~~~~r~~~~~-i~~~~~d~~~~~~-------~~~~ 185 (313)
T d1ixka_ 115 KPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRL-RETRLNLSRLGVLN-VILFHSSSLHIGE-------LNVE 185 (313)
T ss_dssp CTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHH-HHHHHHHHHHTCCS-EEEESSCGGGGGG-------GCCC
T ss_pred CccceeeecccchhhhhHhhhhhcccccceeeeccCHHHH-HHHHHHHHHHHhhc-ccccccccccccc-------cccc
Confidence 46899999999999987766542 345799999999999 99999999999965 7777777665421 2468
Q ss_pred ccEEEECCCCC
Q 021116 232 FDYMSVTPPYT 242 (317)
Q Consensus 232 fDlV~~dPPy~ 242 (317)
||.|++|+|..
T Consensus 186 fD~ILvDaPCS 196 (313)
T d1ixka_ 186 FDKILLDAPCT 196 (313)
T ss_dssp EEEEEEECCTT
T ss_pred ccEEEEccccc
Confidence 99999999975
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=98.57 E-value=6.8e-08 Score=88.57 Aligned_cols=108 Identities=16% Similarity=0.161 Sum_probs=82.4
Q ss_pred CCCeEEEECCCcchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHhHHHhC--C-CCceEEEEecHHHHHHHHhhhcCCCC
Q 021116 155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTG--F-LDVSSIHTVRVETFLERAEQFVGKDG 230 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~-Ga~~V~aVDin~~al~~~ar~N~~~~g--l-~~~v~ii~gD~~~~l~~~~~~~~~~~ 230 (317)
..++||=+|.|.|...-++++. +..+|++||+|+..+ +.+++.+..+. + +++++++.+|+.+++... ..
T Consensus 89 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi-~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~------~~ 161 (295)
T d1inla_ 89 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVI-EAARKYLKQTSCGFDDPRAEIVIANGAEYVRKF------KN 161 (295)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHH-HHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGC------SS
T ss_pred CCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHH-HHHHHHHHhhcccccCCCcEEEhhhHHHHHhcC------CC
Confidence 5689999999999999888875 467899999999999 99998765432 2 367999999999998643 46
Q ss_pred CccEEEECCCCCC-c----c-HHHHHHHHHHcCCcCCCeEEEEEeCC
Q 021116 231 PFDYMSVTPPYTA-V----D-YEVLMAQISKSALVGKDSFIVVEYPL 271 (317)
Q Consensus 231 ~fDlV~~dPPy~~-~----~-~~~~l~~L~~~~lLkpgG~ivv~~~~ 271 (317)
+||+||+|.+-.. . . -.+.++.+. +.|+|+|++++....
T Consensus 162 ~yDvIi~D~~dp~~~~~~~L~t~efy~~~~--~~L~~~Gi~v~q~~s 206 (295)
T d1inla_ 162 EFDVIIIDSTDPTAGQGGHLFTEEFYQACY--DALKEDGVFSAETED 206 (295)
T ss_dssp CEEEEEEEC----------CCSHHHHHHHH--HHEEEEEEEEEECCC
T ss_pred CCCEEEEcCCCCCcCchhhhccHHHHHHHH--hhcCCCcEEEEecCC
Confidence 8999999874321 1 1 245566655 479999999987654
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.57 E-value=8.2e-08 Score=87.54 Aligned_cols=109 Identities=17% Similarity=0.173 Sum_probs=82.1
Q ss_pred CCCCeEEEECCCcchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHhHHHhC--C-CCceEEEEecHHHHHHHHhhhcCCC
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTG--F-LDVSSIHTVRVETFLERAEQFVGKD 229 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~-Ga~~V~aVDin~~al~~~ar~N~~~~g--l-~~~v~ii~gD~~~~l~~~~~~~~~~ 229 (317)
...++||-+|-|.|..+-++++. +..+|+.||+|+..+ +.|++-+..+. + +++++++.+|+..++... .
T Consensus 77 ~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv-~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~------~ 149 (285)
T d2o07a1 77 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVI-QVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQN------Q 149 (285)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHH-HHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTC------S
T ss_pred cCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHH-HHHHhhchhhccccCCCCceEEEccHHHHHhcC------C
Confidence 35689999999999999998875 567999999999999 99998664321 2 368999999999998643 4
Q ss_pred CCccEEEECCCCCCc----cH-HHHHHHHHHcCCcCCCeEEEEEeCC
Q 021116 230 GPFDYMSVTPPYTAV----DY-EVLMAQISKSALVGKDSFIVVEYPL 271 (317)
Q Consensus 230 ~~fDlV~~dPPy~~~----~~-~~~l~~L~~~~lLkpgG~ivv~~~~ 271 (317)
++||+|++|++-..+ .+ .+.++.+. +.|+|||++++....
T Consensus 150 ~~yDvIi~D~~~p~~~~~~L~t~eF~~~~~--~~L~~~Gi~v~q~~s 194 (285)
T d2o07a1 150 DAFDVIITDSSDPMGPAESLFKESYYQLMK--TALKEDGVLCCQGEC 194 (285)
T ss_dssp SCEEEEEEECC-----------CHHHHHHH--HHEEEEEEEEEEEEC
T ss_pred CCCCEEEEcCCCCCCcccccccHHHHHHHH--HhcCCCCeEEEeccc
Confidence 689999999743221 11 23455554 479999999987654
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=98.56 E-value=1.1e-07 Score=87.89 Aligned_cols=108 Identities=17% Similarity=0.161 Sum_probs=81.1
Q ss_pred CCCeEEEECCCcchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHhHHHhC--C-CCceEEEEecHHHHHHHHhhhcCCCC
Q 021116 155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTG--F-LDVSSIHTVRVETFLERAEQFVGKDG 230 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~-Ga~~V~aVDin~~al~~~ar~N~~~~g--l-~~~v~ii~gD~~~~l~~~~~~~~~~~ 230 (317)
..++||-+|-|.|.+.-++++. +..+|+.||+|+..+ +.+++.+..+. + .++++++.+|+.+++... ..
T Consensus 106 ~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv-~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~------~~ 178 (312)
T d2b2ca1 106 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVI-DVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNH------KN 178 (312)
T ss_dssp SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHH-HHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHC------TT
T ss_pred CCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHH-HHHHhhchhhccccCCCCeEEEEchHHHHHHhC------CC
Confidence 5689999999999999998874 457899999999999 99998764432 1 257999999999998753 47
Q ss_pred CccEEEECCCCCCc----c-HHHHHHHHHHcCCcCCCeEEEEEeCC
Q 021116 231 PFDYMSVTPPYTAV----D-YEVLMAQISKSALVGKDSFIVVEYPL 271 (317)
Q Consensus 231 ~fDlV~~dPPy~~~----~-~~~~l~~L~~~~lLkpgG~ivv~~~~ 271 (317)
+||+||+|.+-..+ . -.+.++.+. +.|+|||++++....
T Consensus 179 ~yDvII~D~~dp~~~~~~L~t~eFy~~~~--~~L~~~Gi~v~q~~s 222 (312)
T d2b2ca1 179 EFDVIITDSSDPVGPAESLFGQSYYELLR--DALKEDGILSSQGES 222 (312)
T ss_dssp CEEEEEECCC-------------HHHHHH--HHEEEEEEEEEECCC
T ss_pred CCCEEEEcCCCCCCcchhhhhHHHHHHHH--hhcCCCcEEEEecCC
Confidence 89999999753221 1 134445554 479999999997653
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.51 E-value=2.7e-07 Score=84.20 Aligned_cols=110 Identities=15% Similarity=0.164 Sum_probs=84.3
Q ss_pred CCCeEEEECCCcchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHhHHHhC---CCCceEEEEecHHHHHHHHhhhcCCCC
Q 021116 155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTG---FLDVSSIHTVRVETFLERAEQFVGKDG 230 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~-Ga~~V~aVDin~~al~~~ar~N~~~~g---l~~~v~ii~gD~~~~l~~~~~~~~~~~ 230 (317)
..++||=+|-|.|...-++++. +..+|++||+|+..+ +.+++....++ -.++++++.+|+.+++... .+.
T Consensus 80 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi-~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~-----~~~ 153 (290)
T d1xj5a_ 80 NPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVV-DVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNA-----AEG 153 (290)
T ss_dssp CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHH-HHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTS-----CTT
T ss_pred CCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHH-HHHHHhchhhhccccCCCcEEEEccHHHHHhhc-----ccc
Confidence 5689999999999999988875 557899999999999 99998654321 1367999999999998653 235
Q ss_pred CccEEEECCCCCCc----cH-HHHHHHHHHcCCcCCCeEEEEEeCCC
Q 021116 231 PFDYMSVTPPYTAV----DY-EVLMAQISKSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 231 ~fDlV~~dPPy~~~----~~-~~~l~~L~~~~lLkpgG~ivv~~~~~ 272 (317)
+||+||+|.+-..+ .+ .+.++.+. +.|+|+|++++.....
T Consensus 154 ~yDvIi~D~~dp~~~~~~L~t~eF~~~~~--~~L~~~Gi~v~q~~s~ 198 (290)
T d1xj5a_ 154 SYDAVIVDSSDPIGPAKELFEKPFFQSVA--RALRPGGVVCTQAESL 198 (290)
T ss_dssp CEEEEEECCCCTTSGGGGGGSHHHHHHHH--HHEEEEEEEEEECCCT
T ss_pred CccEEEEcCCCCCCcchhhCCHHHHHHHH--HhcCCCcEEEEecCCc
Confidence 89999998753221 12 45566665 4799999999987643
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=98.37 E-value=2.7e-06 Score=73.78 Aligned_cols=120 Identities=18% Similarity=0.146 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEE
Q 021116 134 EVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHT 212 (317)
Q Consensus 134 ~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas-~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~ 212 (317)
+.+.+.+++-+.... ..++.+++|+|||.|.=|+.++- ....+++.||.+...+ ..+++=++.+|+.| +++++
T Consensus 48 ~~~~rHi~DSl~~~~----~~~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~-~FL~~~~~~L~L~n-v~v~~ 121 (207)
T d1jsxa_ 48 EMLVRHILDSIVVAP----YLQGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRV-RFLRQVQHELKLEN-IEPVQ 121 (207)
T ss_dssp CHHHHHHHHHHHHGG----GCCSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHH-HHHHHHHHHTTCSS-EEEEE
T ss_pred HHHHHHhcchHhhhh----hhcCCceeeeeccCCceeeehhhhcccceEEEEecchHHH-HHHHHHHHHcCCcc-eeeec
Confidence 345667777665431 14578999999999998887554 4445899999999998 99988888899965 99999
Q ss_pred ecHHHHHHHHhhhcCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCCC
Q 021116 213 VRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 213 gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~ 272 (317)
++++++. ...+||+|++- ....+..+++... ++++++|.+++-....
T Consensus 122 ~R~E~~~--------~~~~fD~V~sR---A~~~~~~ll~~~~--~~l~~~g~~~~~KG~~ 168 (207)
T d1jsxa_ 122 SRVEEFP--------SEPPFDGVISR---AFASLNDMVSWCH--HLPGEQGRFYALKGQM 168 (207)
T ss_dssp CCTTTSC--------CCSCEEEEECS---CSSSHHHHHHHHT--TSEEEEEEEEEEESSC
T ss_pred cchhhhc--------cccccceehhh---hhcCHHHHHHHHH--HhcCCCcEEEEECCCC
Confidence 9988753 23579999985 3446777777664 6899999999987644
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=98.36 E-value=9.7e-07 Score=78.90 Aligned_cols=94 Identities=14% Similarity=0.054 Sum_probs=67.4
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEec
Q 021116 135 VVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVR 214 (317)
Q Consensus 135 ~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD 214 (317)
.+.+.+.+.+.. .+++.||++|||+|+++-.++.++ .+|++||+|+..+ +.+++.... .++++++++|
T Consensus 8 ~~~~~Iv~~~~~-------~~~d~vlEIGpG~G~LT~~Ll~~~-~~v~aiEiD~~l~-~~L~~~~~~---~~~~~ii~~D 75 (252)
T d1qyra_ 8 FVIDSIVSAINP-------QKGQAMVEIGPGLAALTEPVGERL-DQLTVIELDRDLA-ARLQTHPFL---GPKLTIYQQD 75 (252)
T ss_dssp HHHHHHHHHHCC-------CTTCCEEEECCTTTTTHHHHHTTC-SCEEEECCCHHHH-HHHHTCTTT---GGGEEEECSC
T ss_pred HHHHHHHHhcCC-------CCCCEEEEECCCchHHHHHHHccC-CceEEEEeccchh-HHHHHHhhh---ccchhHHhhh
Confidence 455666666643 358899999999999999888776 4799999999998 888764332 2469999999
Q ss_pred HHHHHH-HHhhhcCCCCCccEEEECCCCCC
Q 021116 215 VETFLE-RAEQFVGKDGPFDYMSVTPPYTA 243 (317)
Q Consensus 215 ~~~~l~-~~~~~~~~~~~fDlV~~dPPy~~ 243 (317)
+.++.. .+.. ..+..-.|+.|.||+-
T Consensus 76 ~l~~~~~~~~~---~~~~~~~vvgNlPY~I 102 (252)
T d1qyra_ 76 AMTFNFGELAE---KMGQPLRVFGNLPYNI 102 (252)
T ss_dssp GGGCCHHHHHH---HHTSCEEEEEECCTTT
T ss_pred hhhhccccccc---ccCCCeEEEecchHHH
Confidence 986421 1100 0123357889999974
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=98.34 E-value=1.2e-08 Score=91.38 Aligned_cols=78 Identities=13% Similarity=0.143 Sum_probs=62.5
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
.++++|||+|||+|+++..++..+ .+|++||+|+..+ +.++++.. ..++++++++|+.++- .....++
T Consensus 28 ~~~d~VLEIGpG~G~LT~~L~~~~-~~v~aIE~D~~l~-~~l~~~~~---~~~n~~ii~~D~l~~~-------~~~~~~~ 95 (245)
T d1yuba_ 28 KETDTVYEIGTGKGHLTTKLAKIS-KQVTSIELDSHLF-NLSSEKLK---LNTRVTLIHQDILQFQ-------FPNKQRY 95 (245)
T ss_dssp CSSEEEEECSCCCSSCSHHHHHHS-SEEEESSSSCSSS-SSSSCTTT---TCSEEEECCSCCTTTT-------CCCSSEE
T ss_pred CCCCeEEEECCCccHHHHHHHhhc-CceeEeeecccch-hhhhhhhh---hccchhhhhhhhhccc-------cccceee
Confidence 367899999999999999888886 4799999999997 77766543 2356999999998752 2345678
Q ss_pred EEEECCCCCC
Q 021116 234 YMSVTPPYTA 243 (317)
Q Consensus 234 lV~~dPPy~~ 243 (317)
.|+.|.||+-
T Consensus 96 ~vv~NLPY~I 105 (245)
T d1yuba_ 96 KIVGNIPYHL 105 (245)
T ss_dssp EEEEECCSSS
T ss_pred eEeeeeehhh
Confidence 8999999975
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=98.22 E-value=5.2e-06 Score=70.52 Aligned_cols=114 Identities=15% Similarity=0.107 Sum_probs=79.7
Q ss_pred HHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHH
Q 021116 139 AAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF 218 (317)
Q Consensus 139 alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~ 218 (317)
.+.+.|.. .++..++|..+|.|.-+.+++..++ +|+|+|.|++++ +.+++. ..+++.+++++..++
T Consensus 9 Evl~~l~~-------~~g~~~vD~T~G~GGhs~~iL~~~~-~viaiD~D~~ai-~~a~~~-----~~~~~~~~~~~f~~~ 74 (182)
T d1wg8a2 9 EALDLLAV-------RPGGVYVDATLGGAGHARGILERGG-RVIGLDQDPEAV-ARAKGL-----HLPGLTVVQGNFRHL 74 (182)
T ss_dssp HHHHHHTC-------CTTCEEEETTCTTSHHHHHHHHTTC-EEEEEESCHHHH-HHHHHT-----CCTTEEEEESCGGGH
T ss_pred HHHHhcCC-------CCCCEEEEeCCCCcHHHHHHhcccC-cEEEEhhhhhHH-HHHhhc-----cccceeEeehHHHHH
Confidence 34466654 4788999999999999998888764 799999999998 877642 235689999876665
Q ss_pred HHHHhhhcCCCCCccEEEECCCCCCcc----------HHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 219 LERAEQFVGKDGPFDYMSVTPPYTAVD----------YEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 219 l~~~~~~~~~~~~fDlV~~dPPy~~~~----------~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
...+..+ ..+.+|.|++|.-+...+ ....|++. ..+|++||.+++..-
T Consensus 75 ~~~l~~~--~~~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~--~~~lk~gg~~~ii~f 132 (182)
T d1wg8a2 75 KRHLAAL--GVERVDGILADLGVSSFHLDDPSDELNALKEFLEQA--AEVLAPGGRLVVIAF 132 (182)
T ss_dssp HHHHHHT--TCSCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHH--HHHEEEEEEEEEEEC
T ss_pred HHHHHHc--CCCccCEEEEEccCCHHHhhcchHHHHHHHHHHHHH--HhhhCCCCeEEEEec
Confidence 4433221 236799999997543221 12233333 247999999886654
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=98.03 E-value=1.3e-05 Score=70.81 Aligned_cols=127 Identities=18% Similarity=0.107 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHH-HcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEE
Q 021116 134 EVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAI-SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHT 212 (317)
Q Consensus 134 ~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaa-s~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~ 212 (317)
+.+.+.+++-++.....+ .....+++|+|||.|.=|+.++ .....+++.||.+..-+ ...+.=++.+|+.+ +++++
T Consensus 50 ~i~~rHi~DSl~~~~~~~-~~~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~-~FL~~v~~~L~L~n-~~i~~ 126 (239)
T d1xdza_ 50 EVYLKHFYDSITAAFYVD-FNQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRI-TFLEKLSEALQLEN-TTFCH 126 (239)
T ss_dssp HHHHHTHHHHHGGGGTSC-GGGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHH-HHHHHHHHHHTCSS-EEEEE
T ss_pred HHHHHhccchhhhhhhhc-ccCCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHH-HHHHHHHHHhCCCC-cEEEe
Confidence 445677777765421100 0136799999999999888754 35566899999999998 99988888999965 88999
Q ss_pred ecHHHHHHHHhhhcCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCCC
Q 021116 213 VRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 213 gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~ 272 (317)
+.++++.... ...+.||+|++= ....+..+++... ++++++|.+++--...
T Consensus 127 ~R~E~~~~~~----~~~~~~D~v~sR---Ava~l~~ll~~~~--~~l~~~g~~i~~KG~~ 177 (239)
T d1xdza_ 127 DRAETFGQRK----DVRESYDIVTAR---AVARLSVLSELCL--PLVKKNGLFVALKAAS 177 (239)
T ss_dssp SCHHHHTTCT----TTTTCEEEEEEE---CCSCHHHHHHHHG--GGEEEEEEEEEEECC-
T ss_pred ehhhhccccc----cccccceEEEEh---hhhCHHHHHHHHh--hhcccCCEEEEECCCC
Confidence 9998763211 123579999985 3446777777654 6899999999887754
|
| >d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HaeIII species: Haemophilus aegyptius [TaxId: 197575]
Probab=97.78 E-value=2.7e-05 Score=69.25 Aligned_cols=71 Identities=15% Similarity=0.174 Sum_probs=55.7
Q ss_pred eEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEE
Q 021116 158 RWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSV 237 (317)
Q Consensus 158 rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~ 237 (317)
+|+|||||.|.+.+-+-..|...+.++|+|+.++ +..+.|. . .+++.+|+.++... .-+..|+++.
T Consensus 2 k~~~lF~G~Gg~~~gl~~aG~~~~~a~e~d~~a~-~~~~~N~-----~--~~~~~~Di~~~~~~------~~~~~dll~~ 67 (324)
T d1dcta_ 2 NLISLFSGAGGLDLGFQKAGFRIICANEYDKSIW-KTYESNH-----S--AKLIKGDISKISSD------EFPKCDGIIG 67 (324)
T ss_dssp EEEEESCSSCHHHHHHHHHTCEEEEEEECCHHHH-HHHHHHC-----C--SEEEESCTTTSCGG------GSCCCSEEEE
T ss_pred eEEEeCcCcCHHHHHHHHCCCEEEEEEeCCHHHH-HHHHHHC-----C--CCCccCChhhCCHh------HcccccEEee
Confidence 6999999999998766666887788999999998 8888774 1 24678998776321 1257899999
Q ss_pred CCCCC
Q 021116 238 TPPYT 242 (317)
Q Consensus 238 dPPy~ 242 (317)
.||..
T Consensus 68 g~PCq 72 (324)
T d1dcta_ 68 GPPCQ 72 (324)
T ss_dssp CCCCT
T ss_pred ccccc
Confidence 99975
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=97.78 E-value=3.7e-05 Score=67.76 Aligned_cols=97 Identities=12% Similarity=-0.040 Sum_probs=64.6
Q ss_pred CCCeEEEECCCcchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
...+|||+|||+|.++++++++. .-+++..|+ |..+ + ..+..++++++.+|.++. .+..|
T Consensus 81 ~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi-~-------~~~~~~ri~~~~gd~~~~----------~p~~D 141 (244)
T d1fp1d2 81 GISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVI-E-------NAPPLSGIEHVGGDMFAS----------VPQGD 141 (244)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHH-T-------TCCCCTTEEEEECCTTTC----------CCCEE
T ss_pred CCcEEEEecCCCcHHHHHHHHHCCCCeEEEecc-hhhh-h-------ccCCCCCeEEecCCcccc----------cccce
Confidence 45799999999999999988763 347899997 4444 3 233457899999997643 24569
Q ss_pred EEEECCCCCCccHHHHHHHHHH-cCCcCCCeEEEEEeC
Q 021116 234 YMSVTPPYTAVDYEVLMAQISK-SALVGKDSFIVVEYP 270 (317)
Q Consensus 234 lV~~dPPy~~~~~~~~l~~L~~-~~lLkpgG~ivv~~~ 270 (317)
++++---.+...-++....|.. .+.|+|||.+++...
T Consensus 142 ~~~l~~vLh~~~de~~~~iL~~~~~aL~pgg~llI~e~ 179 (244)
T d1fp1d2 142 AMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEF 179 (244)
T ss_dssp EEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEEEehhhhhCCHHHHHHHHHHHHHHcCCCcEEEEEEE
Confidence 9988532222223444444431 247899998877653
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=97.64 E-value=6.6e-05 Score=64.55 Aligned_cols=57 Identities=19% Similarity=0.096 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHH
Q 021116 134 EVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLE 200 (317)
Q Consensus 134 ~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~ 200 (317)
..+.+.++.... .+|+.|||+|||||+.+++|...| .+.+++|++++.+ +.|++.++
T Consensus 199 ~~L~~~lI~~~s--------~~gd~VlDpF~GSGTT~~aa~~~~-R~~ig~El~~~y~-~~a~~Rl~ 255 (256)
T d1g60a_ 199 RDLIERIIRASS--------NPNDLVLDCFMGSGTTAIVAKKLG-RNFIGCDMNAEYV-NQANFVLN 255 (256)
T ss_dssp HHHHHHHHHHHC--------CTTCEEEESSCTTCHHHHHHHHTT-CEEEEEESCHHHH-HHHHHHHH
T ss_pred hhHHHHHHHHhC--------CCCCEEEECCCCchHHHHHHHHcC-CeEEEEeCCHHHH-HHHHHHHc
Confidence 445555555543 368999999999999999888887 5799999999998 99998765
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.60 E-value=0.00018 Score=65.75 Aligned_cols=80 Identities=18% Similarity=0.108 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEE
Q 021116 134 EVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHT 212 (317)
Q Consensus 134 ~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~-Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~ 212 (317)
..+...+.+.++.... .....+..|||+|.|.|.++.+++.+ ++.+|++||+|+..+ +.+++... .+++++++
T Consensus 23 ~~i~~~Iv~~~~l~~~-~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~-~~L~~~~~----~~~~~ii~ 96 (322)
T d1i4wa_ 23 PTVYNKIFDKLDLTKT-YKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLY-KFLNAKFE----GSPLQILK 96 (322)
T ss_dssp HHHHHHHHHHHCGGGT-CCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHH-HHHHHHTT----TSSCEEEC
T ss_pred HHHHHHHHHHhcCCcc-ccccCCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHH-HHHHHhcc----CCCcEEEe
Confidence 4456666666542100 00135778999999999999988876 456899999999998 88876543 24589999
Q ss_pred ecHHHHH
Q 021116 213 VRVETFL 219 (317)
Q Consensus 213 gD~~~~l 219 (317)
+|+..+.
T Consensus 97 ~D~l~~~ 103 (322)
T d1i4wa_ 97 RDPYDWS 103 (322)
T ss_dssp SCTTCHH
T ss_pred Cchhhcc
Confidence 9988764
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=97.60 E-value=3.1e-05 Score=65.64 Aligned_cols=120 Identities=13% Similarity=0.066 Sum_probs=67.1
Q ss_pred CCCeEEEECCCcch----HHHHHHHc----CC-CEEEEEeCCHHHHHHHHHHhHHH---------------h---CCCC-
Q 021116 155 RPGRWLDLYSGTGS----VGIEAISR----GC-SEVHFVEMDPWVVSNVLIPNLEW---------------T---GFLD- 206 (317)
Q Consensus 155 ~~~rVLDlgcGtG~----l~Ieaas~----Ga-~~V~aVDin~~al~~~ar~N~~~---------------~---gl~~- 206 (317)
+.-|||+.|||||- +++.+... +. -+|+|.|+|+.++ +.|++..-. + +...
T Consensus 24 ~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l-~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~ 102 (193)
T d1af7a2 24 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVL-EKARSGIYRLSELKTLSPQQLQRYFMRGTGPHE 102 (193)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHH-HHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSC
T ss_pred CCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHh-hHhhcCcccHHHHhhhhHHHHhhceeecCCCcc
Confidence 45699999999995 44433321 11 2699999999999 888753210 0 0000
Q ss_pred -----------ceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCC---ccHHHHHHHHHHcCCcCCCeEEEEEeCCC
Q 021116 207 -----------VSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTA---VDYEVLMAQISKSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 207 -----------~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~---~~~~~~l~~L~~~~lLkpgG~ivv~~~~~ 272 (317)
.+++...+.... .+...+.||+|++---... ....++++.+. +.|+|||++++-+.
T Consensus 103 ~~~~~~~~~~~~v~~~~~~~~~~------~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~--~~L~pGG~L~lG~s-- 172 (193)
T d1af7a2 103 GLVRVRQELANYVEFSSVNLLEK------QYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFV--PLLKPDGLLFAGHS-- 172 (193)
T ss_dssp SEEEECHHHHTTEEEEECCTTCS------SCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHG--GGEEEEEEEEECTT--
T ss_pred ceeehHHHHHHHHHHhhhhcccc------ccCCCCCccEEEeehhHHhcCHHHHHHHHHHHH--HHhCCCcEEEEecC--
Confidence 111222211110 0112357999998421111 12345666665 58999999998765
Q ss_pred CCccccCCCeEEE
Q 021116 273 TDMLDTCGCLVKI 285 (317)
Q Consensus 273 ~~l~~~~~~~~~~ 285 (317)
+.+......|+..
T Consensus 173 E~l~~~~~~f~~~ 185 (193)
T d1af7a2 173 ENFSNLVREFSLR 185 (193)
T ss_dssp CCCTTTCTTEEEE
T ss_pred ccccccccCcEEC
Confidence 4454444566543
|
| >d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HhaI species: Haemophilus haemolyticus [TaxId: 726]
Probab=97.59 E-value=3.6e-05 Score=69.15 Aligned_cols=74 Identities=22% Similarity=0.214 Sum_probs=57.3
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
..+-+|+|||||.|.+.+.+-..|..-|.++|+++.|+ +..+.|.-. ..++|+.++.... -..+|
T Consensus 9 ~~~lrv~~lFsG~Gg~~~gl~~aG~~~v~a~e~d~~a~-~~~~~N~~~--------~~~~Di~~~~~~~------~~~~D 73 (327)
T d2c7pa1 9 LTGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQ-EVYEMNFGE--------KPEGDITQVNEKT------IPDHD 73 (327)
T ss_dssp TTTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHH-HHHHHHHSC--------CCBSCGGGSCGGG------SCCCS
T ss_pred CCCCeEEEECccccHHHHHHHHCCCeEEEEEeCCHHHH-HHHHHHCCC--------CCcCchhcCchhh------cceee
Confidence 35789999999999999877677887788899999998 999888631 1247877653221 25799
Q ss_pred EEEECCCCC
Q 021116 234 YMSVTPPYT 242 (317)
Q Consensus 234 lV~~dPPy~ 242 (317)
+++..||..
T Consensus 74 ll~ggpPCq 82 (327)
T d2c7pa1 74 ILCAGFPCQ 82 (327)
T ss_dssp EEEEECCCT
T ss_pred eeecccccc
Confidence 999999964
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=97.50 E-value=7.5e-05 Score=65.98 Aligned_cols=48 Identities=17% Similarity=0.122 Sum_probs=41.7
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhC
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTG 203 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~g 203 (317)
.+++.|||+|||||+.+++|...|- +.+++|++++.+ +.|++.+..+.
T Consensus 249 ~~gdiVlDpF~GSGTT~~AA~~lgR-~~Ig~El~~~y~-~~a~~Rl~~~~ 296 (320)
T d1booa_ 249 EPDDLVVDIFGGSNTTGLVAERESR-KWISFEMKPEYV-AASAFRFLDNN 296 (320)
T ss_dssp CTTCEEEETTCTTCHHHHHHHHTTC-EEEEEESCHHHH-HHHHGGGSCSC
T ss_pred cCCCEEEecCCCCcHHHHHHHHcCC-cEEEEeCCHHHH-HHHHHHHHhcc
Confidence 4689999999999999999888874 799999999998 99987766543
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=97.46 E-value=0.00014 Score=63.12 Aligned_cols=47 Identities=19% Similarity=0.282 Sum_probs=42.3
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHh
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWT 202 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~ 202 (317)
.+++.|||+|||||+.+++|...| .+.+++|++++.+ +.|++.++..
T Consensus 206 ~~gdiVLDpF~GSGTT~~Aa~~lg-R~~ig~El~~~y~-~~a~~Ri~~~ 252 (279)
T d1eg2a_ 206 HPGSTVLDFFAGSGVTARVAIQEG-RNSICTDAAPVFK-EYYQKQLTFL 252 (279)
T ss_dssp CTTCEEEETTCTTCHHHHHHHHHT-CEEEEEESSTHHH-HHHHHHHHHC
T ss_pred CCCCEEEecCCCCcHHHHHHHHhC-CeEEEEeCCHHHH-HHHHHHHHHh
Confidence 468999999999999999888887 4799999999998 9999988764
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=97.43 E-value=0.00024 Score=59.71 Aligned_cols=106 Identities=9% Similarity=-0.049 Sum_probs=65.8
Q ss_pred CCCCeEEEECCCcchHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHh-hhcCCCC
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAE-QFVGKDG 230 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~--Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~-~~~~~~~ 230 (317)
.++.+||||||+.|++...+.+. ....|+++|+.+. + .+ +.+.++++|..+...... .......
T Consensus 21 k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~---~---------~i-~~~~~~~~d~~~~~~~~~~~~~~~~~ 87 (180)
T d1ej0a_ 21 KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM---D---------PI-VGVDFLQGDFRDELVMKALLERVGDS 87 (180)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC---C---------CC-TTEEEEESCTTSHHHHHHHHHHHTTC
T ss_pred CCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc---c---------cc-CCceEeecccccchhhhhhhhhccCc
Confidence 46789999999999999877653 3457999998772 1 23 237788988754321110 0011246
Q ss_pred CccEEEECCCCCC-ccH----HHHH----HHHH-HcCCcCCCeEEEEEeCCC
Q 021116 231 PFDYMSVTPPYTA-VDY----EVLM----AQIS-KSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 231 ~fDlV~~dPPy~~-~~~----~~~l----~~L~-~~~lLkpgG~ivv~~~~~ 272 (317)
++|+|++|..... +.. ...+ ..+. +.++|++||.+++=.-..
T Consensus 88 ~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~g 139 (180)
T d1ej0a_ 88 KVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQG 139 (180)
T ss_dssp CEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESS
T ss_pred ceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEecC
Confidence 7999999964432 211 1111 1111 336899999999866533
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=97.40 E-value=0.00012 Score=64.28 Aligned_cols=93 Identities=12% Similarity=-0.050 Sum_probs=62.4
Q ss_pred CCeEEEECCCcchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccE
Q 021116 156 PGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (317)
Q Consensus 156 ~~rVLDlgcGtG~l~Ieaas~G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDl 234 (317)
..+|||+|||+|.++++++++. ..+++..|. |..+ +. .+..++++++.+|+++- .+.+|+
T Consensus 81 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi-~~-------~~~~~rv~~~~gD~f~~----------~p~aD~ 141 (244)
T d1fp2a2 81 LESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVV-EN-------LSGSNNLTYVGGDMFTS----------IPNADA 141 (244)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHH-TT-------CCCBTTEEEEECCTTTC----------CCCCSE
T ss_pred ceEEEEecCCccHHHHHHHHhCCCCeEEEecC-HHHH-Hh-------CcccCceEEEecCcccC----------CCCCcE
Confidence 4689999999999999988763 348999998 4444 32 34457899999997652 246899
Q ss_pred EEECCCCCCccHH---HHHHHHHHcCCcCCC---eEEEEEe
Q 021116 235 MSVTPPYTAVDYE---VLMAQISKSALVGKD---SFIVVEY 269 (317)
Q Consensus 235 V~~dPPy~~~~~~---~~l~~L~~~~lLkpg---G~ivv~~ 269 (317)
+++---.+...-+ ++++.+. +.|+|| |++++..
T Consensus 142 ~~l~~vLHdw~d~~~~~iL~~~~--~al~pgg~~~~lli~e 180 (244)
T d1fp2a2 142 VLLKYILHNWTDKDCLRILKKCK--EAVTNDGKRGKVTIID 180 (244)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHH--HHHSGGGCCCEEEEEE
T ss_pred EEEEeecccCChHHHHHHHHHHH--HHcCcccCCcEEEEEE
Confidence 9985322212223 3444443 368887 6665543
|
| >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNMT2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.39 E-value=6.2e-05 Score=67.43 Aligned_cols=75 Identities=20% Similarity=0.260 Sum_probs=52.4
Q ss_pred CeEEEECCCcchHHHHHHHcCCC--EEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccE
Q 021116 157 GRWLDLYSGTGSVGIEAISRGCS--EVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (317)
Q Consensus 157 ~rVLDlgcGtG~l~Ieaas~Ga~--~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDl 234 (317)
-+|+|||||.|.+.+-+-..|.. -|.++|+++.++ +..+.|.. + ..++.+|+.++..... ....+|+
T Consensus 3 ~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~-~~~~~n~~-----~-~~~~~~di~~~~~~~~----~~~~~Dl 71 (343)
T d1g55a_ 3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVAN-EVYKYNFP-----H-TQLLAKTIEGITLEEF----DRLSFDM 71 (343)
T ss_dssp EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHH-HHHHHHCT-----T-SCEECSCGGGCCHHHH----HHHCCSE
T ss_pred CEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHH-HHHHHHCC-----C-CCcccCchhhCCHhHc----CCCCccE
Confidence 47999999999988755455753 378999999998 88887742 1 3466778775532211 0136899
Q ss_pred EEECCCCC
Q 021116 235 MSVTPPYT 242 (317)
Q Consensus 235 V~~dPPy~ 242 (317)
++..||..
T Consensus 72 l~ggpPCq 79 (343)
T d1g55a_ 72 ILMSPPCQ 79 (343)
T ss_dssp EEECCC--
T ss_pred EEeecccc
Confidence 99999964
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=97.38 E-value=6.7e-05 Score=65.82 Aligned_cols=104 Identities=12% Similarity=0.118 Sum_probs=64.8
Q ss_pred CCCCeEEEECCCcchHHHHHH---H-cC-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCC
Q 021116 154 LRPGRWLDLYSGTGSVGIEAI---S-RG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaa---s-~G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~ 228 (317)
.+.++||++|++.|.-++..+ + .+ ..+|+++|+++... ..... . .++++++++|..+.. ...++ .
T Consensus 79 ~KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~-~~~~~-----~-~~~I~~i~gDs~~~~-~~~~l--~ 148 (232)
T d2bm8a1 79 LRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRC-QIPAS-----D-MENITLHQGDCSDLT-TFEHL--R 148 (232)
T ss_dssp HCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTC-CCCGG-----G-CTTEEEEECCSSCSG-GGGGG--S
T ss_pred hCCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhh-hhhhc-----c-ccceeeeecccccHH-HHHHH--H
Confidence 357899999999997666433 2 23 35899999998664 33211 1 256999999865321 11111 2
Q ss_pred CCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 229 ~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
...+|+||+|--.. ++..+..+.-.++|++||+++++..
T Consensus 149 ~~~~dlIfID~~H~---~~~v~~~~~~~~lLk~GG~iIveD~ 187 (232)
T d2bm8a1 149 EMAHPLIFIDNAHA---NTFNIMKWAVDHLLEEGDYFIIEDM 187 (232)
T ss_dssp SSCSSEEEEESSCS---SHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred hcCCCEEEEcCCcc---hHHHHHHHHHhcccCcCCEEEEEcC
Confidence 34689999996422 2222222211258999999999753
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=96.87 E-value=0.0009 Score=58.19 Aligned_cols=93 Identities=10% Similarity=-0.049 Sum_probs=60.1
Q ss_pred CCeEEEECCCcchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccE
Q 021116 156 PGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (317)
Q Consensus 156 ~~rVLDlgcGtG~l~Ieaas~G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDl 234 (317)
..+|||+|||+|.++++++++. ..+++.+|.-+ .+ +. ....++++++.+|.++.+ +..|+
T Consensus 82 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi-~~-------~~~~~r~~~~~~d~~~~~----------P~ad~ 142 (243)
T d1kyza2 82 LKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPH-VI-ED-------APSYPGVEHVGGDMFVSI----------PKADA 142 (243)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTT-TT-TT-------CCCCTTEEEEECCTTTCC----------CCCSC
T ss_pred CcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHH-hh-hh-------cccCCceEEecccccccC----------CCcce
Confidence 5789999999999999988763 34799999865 33 32 223467999999976531 33566
Q ss_pred EEECCCCCCcc---HHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 235 MSVTPPYTAVD---YEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 235 V~~dPPy~~~~---~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
+++--=.+... ...+++.+. +.|+|||.+++..
T Consensus 143 ~~l~~vlh~~~d~~~~~iL~~~~--~al~pgg~~li~d 178 (243)
T d1kyza2 143 VFMKWICHDWSDEHCLKFLKNCY--EALPDNGKVIVAE 178 (243)
T ss_dssp EECSSSSTTSCHHHHHHHHHHHH--HHCCSSSCEEEEE
T ss_pred EEEEEEeecCCHHHHHHHHHHHH--HhcCCCceEEEEE
Confidence 55532111112 233444444 4689999887754
|
| >d2oo3a1 c.66.1.59 (A:9-279) Uncharacterized protein LPG1296 {Legionella pneumophila [TaxId: 446]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: LPG1296-like domain: Uncharacterized protein LPG1296 species: Legionella pneumophila [TaxId: 446]
Probab=96.84 E-value=0.00074 Score=60.28 Aligned_cols=105 Identities=15% Similarity=0.202 Sum_probs=74.6
Q ss_pred EEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEECC
Q 021116 160 LDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTP 239 (317)
Q Consensus 160 LDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dP 239 (317)
+..+.||-.++..+++ ...+.+++|..|... +.+++|+.. ..++.+++.|.++.+..+ +|. .++=-+|++||
T Consensus 87 l~~YPGSP~ia~~llR-~~Drl~l~ELHp~e~-~~L~~~~~~---~~~~~v~~~DG~~~l~al--lPP-~~rRgLVLIDP 158 (271)
T d2oo3a1 87 LSYYPGSPYFAINQLR-SQDRLYLCELHPTEY-NFLLKLPHF---NKKVYVNHTDGVSKLNAL--LPP-PEKRGLIFIDP 158 (271)
T ss_dssp CCEEECHHHHHHHHSC-TTSEEEEECCSHHHH-HHHTTSCCT---TSCEEEECSCHHHHHHHH--CSC-TTSCEEEEECC
T ss_pred cCcCCCCHHHHHHhCC-CCCceEEeecCHHHH-HHHHHHhcc---CCCceEEcCchHHHHHhh--CCC-CCCceEEEecC
Confidence 4688999888765544 456899999999998 888877542 357999999999887664 222 23346999999
Q ss_pred CCCC-ccHHHHHHHHHHcCCcCCCeEEEEEeCCC
Q 021116 240 PYTA-VDYEVLMAQISKSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 240 Py~~-~~~~~~l~~L~~~~lLkpgG~ivv~~~~~ 272 (317)
||.. .+|..+.+.+.+.-.-=+.|++.+-++..
T Consensus 159 pYE~k~ey~~v~~~l~~a~kr~~~g~~~iWYPi~ 192 (271)
T d2oo3a1 159 SYERKEEYKEIPYAIKNAYSKFSTGLYCVWYPVV 192 (271)
T ss_dssp CCCSTTHHHHHHHHHHHHHHHCTTSEEEEEEEES
T ss_pred CcCCHHHHHHHHHHHHHHHHhCCCceEEEEeecc
Confidence 9964 47777777765321123577777777643
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=96.75 E-value=0.00066 Score=57.96 Aligned_cols=57 Identities=19% Similarity=0.335 Sum_probs=40.6
Q ss_pred EEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCc--------cHHHHHHH----HH-HcCCcCCCeEEEEEeC
Q 021116 209 SIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAV--------DYEVLMAQ----IS-KSALVGKDSFIVVEYP 270 (317)
Q Consensus 209 ~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~--------~~~~~l~~----L~-~~~lLkpgG~ivv~~~ 270 (317)
++++||+.+++..+ +++++|+|+.||||+.+ .+++.++. +. ..++|+++|.+++...
T Consensus 6 ~i~~gDcle~l~~l-----pd~sVdliitdPPY~~~~~~~d~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~~~~~ 75 (256)
T d1g60a_ 6 KIHQMNCFDFLDQV-----ENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFNT 75 (256)
T ss_dssp SEEECCHHHHHHHS-----CTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred EEEeccHHHHHhhC-----cCCCcCEEEECCCCCCCcCcCcCCCCHHHHHHHHHHHHHHhhhccccCcccccccC
Confidence 37999999998876 36789999999999642 23332221 11 2468999999987654
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=96.71 E-value=0.00058 Score=59.10 Aligned_cols=59 Identities=15% Similarity=0.219 Sum_probs=42.4
Q ss_pred EEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCc--------cHHHHHHHH-H-HcCCcCCCeEEEEEeCCC
Q 021116 209 SIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAV--------DYEVLMAQI-S-KSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 209 ~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~--------~~~~~l~~L-~-~~~lLkpgG~ivv~~~~~ 272 (317)
.++.+|+.+.++.+ +++++|+||.||||+.. .|.+.+... . ..++|+++|.+++.....
T Consensus 6 ~~~~~D~le~l~~l-----~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~~~~~ 74 (279)
T d1eg2a_ 6 VYDVCDCLDTLAKL-----PDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGGLQ 74 (279)
T ss_dssp EEEECCHHHHHHTS-----CTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEECSC
T ss_pred eEEechHHHHHhhC-----cCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEecCcc
Confidence 47889999998765 36899999999999742 233333222 1 236899999999977644
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=96.65 E-value=0.00058 Score=59.99 Aligned_cols=59 Identities=14% Similarity=0.178 Sum_probs=42.4
Q ss_pred eEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCc--------cHHHHHHH----HH-HcCCcCCCeEEEEEeCC
Q 021116 208 SSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAV--------DYEVLMAQ----IS-KSALVGKDSFIVVEYPL 271 (317)
Q Consensus 208 v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~--------~~~~~l~~----L~-~~~lLkpgG~ivv~~~~ 271 (317)
-++++||+.++++.+ +++++|+|++||||... ...+.++. +. ..++|+++|.+++....
T Consensus 13 ~~l~~GD~le~l~~l-----~~~sVdli~tDPPY~~~~~~~~~~~~~~~y~~~~~~~l~~~~rvLk~~G~i~i~~~~ 84 (320)
T d1booa_ 13 GSMYIGDSLELLESF-----PEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGG 84 (320)
T ss_dssp EEEEESCHHHHGGGS-----CSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred CEEEehhHHHHHhhC-----ccCCCCEEEECCCCcCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCcccCcccccccc
Confidence 378999999988765 36899999999999742 12222222 21 24789999999998764
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=96.32 E-value=0.0084 Score=48.96 Aligned_cols=102 Identities=14% Similarity=0.069 Sum_probs=57.8
Q ss_pred CCCCeEEEECCCc-chHHHHHH-HcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCC
Q 021116 154 LRPGRWLDLYSGT-GSVGIEAI-SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGP 231 (317)
Q Consensus 154 ~~~~rVLDlgcGt-G~l~Ieaa-s~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~ 231 (317)
.++++||-+|||. |.+++.++ .+|+.+|+++|.+++.+ +.+++ +|...-+.....|..++.+...++. ....
T Consensus 27 ~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~-~~a~~----lGa~~vi~~~~~~~~~~~~~i~~~~-~~~g 100 (182)
T d1vj0a2 27 FAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRL-KLAEE----IGADLTLNRRETSVEERRKAIMDIT-HGRG 100 (182)
T ss_dssp CBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHH-HHHHH----TTCSEEEETTTSCHHHHHHHHHHHT-TTSC
T ss_pred CCCCEEEEECCCccchhheecccccccccccccccccccc-ccccc----ccceEEEeccccchHHHHHHHHHhh-CCCC
Confidence 4689999998762 33444434 46887899999999998 88864 4542111111234444332222111 2345
Q ss_pred ccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEE
Q 021116 232 FDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVE 268 (317)
Q Consensus 232 fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~ 268 (317)
+|+||-.-. ....++..++ .++++|++++.
T Consensus 101 ~Dvvid~vG-~~~~~~~a~~------~l~~~G~iv~~ 130 (182)
T d1vj0a2 101 ADFILEATG-DSRALLEGSE------LLRRGGFYSVA 130 (182)
T ss_dssp EEEEEECSS-CTTHHHHHHH------HEEEEEEEEEC
T ss_pred ceEEeecCC-chhHHHHHHH------HhcCCCEEEEE
Confidence 999885421 1112232232 58999998765
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=96.16 E-value=0.0066 Score=49.77 Aligned_cols=97 Identities=15% Similarity=0.120 Sum_probs=58.9
Q ss_pred CCCCeEEEECCCc-chHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEE---ecHHHHHHHHhhhcCC
Q 021116 154 LRPGRWLDLYSGT-GSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHT---VRVETFLERAEQFVGK 228 (317)
Q Consensus 154 ~~~~rVLDlgcGt-G~l~Ieaas-~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~---gD~~~~l~~~~~~~~~ 228 (317)
.++++||=+|||. |.+++.+++ .|+.+|+++|.+++.+ +.++ .+|.. +++. .+..+.+.... .
T Consensus 26 ~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~-~~a~----~lGa~---~~i~~~~~~~~~~v~~~t----~ 93 (174)
T d1jqba2 26 EMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICV-EAAK----FYGAT---DILNYKNGHIEDQVMKLT----N 93 (174)
T ss_dssp CTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHH-HHHH----HHTCS---EEECGGGSCHHHHHHHHT----T
T ss_pred CCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhH-HHHH----hhCcc---ccccccchhHHHHHHHHh----h
Confidence 4678888888764 555555555 5777899999999987 7775 45653 2332 22333333321 2
Q ss_pred CCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 229 ~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
...+|+||-.-.- ...++..++ .++++|.+++.-
T Consensus 94 g~G~D~vid~~g~-~~~~~~a~~------~~~~~G~iv~~G 127 (174)
T d1jqba2 94 GKGVDRVIMAGGG-SETLSQAVK------MVKPGGIISNIN 127 (174)
T ss_dssp TSCEEEEEECSSC-TTHHHHHHH------HEEEEEEEEECC
T ss_pred ccCcceEEEccCC-HHHHHHHHH------HHhcCCEEEEEe
Confidence 3459998865421 112333332 579999998853
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=95.65 E-value=0.015 Score=48.44 Aligned_cols=102 Identities=9% Similarity=0.007 Sum_probs=62.5
Q ss_pred CCCCeEEEECCCc-chHHHHHH-HcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEE---EecHHHHHHHHhhhcCC
Q 021116 154 LRPGRWLDLYSGT-GSVGIEAI-SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH---TVRVETFLERAEQFVGK 228 (317)
Q Consensus 154 ~~~~rVLDlgcGt-G~l~Ieaa-s~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii---~gD~~~~l~~~~~~~~~ 228 (317)
.++++||-+|||. |.+++.++ .+|+.+|+++|.++..+ +.|++ +|.. .++ ..|..+...... .
T Consensus 24 ~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl-~~a~~----~Ga~---~~~~~~~~~~~~~i~~~t----~ 91 (195)
T d1kola2 24 GPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARL-AHAKA----QGFE---IADLSLDTPLHEQIAALL----G 91 (195)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHH-HHHHH----TTCE---EEETTSSSCHHHHHHHHH----S
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhh-Hhhhh----cccc---EEEeCCCcCHHHHHHHHh----C
Confidence 5789999999986 44455544 46888999999999998 88864 3542 122 234444443332 2
Q ss_pred CCCccEEEECCCC--C-Cc-------cHHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 229 DGPFDYMSVTPPY--T-AV-------DYEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 229 ~~~fDlV~~dPPy--~-~~-------~~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
...+|++|-.--. . .. .-.+.++... +.++++|.+++.-
T Consensus 92 g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~--~~~r~gG~v~~~G 140 (195)
T d1kola2 92 EPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLM--QVTRVAGKIGIPG 140 (195)
T ss_dssp SSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHH--HHEEEEEEEEECS
T ss_pred CCCcEEEEECccccccCCcccceeecCcHHHHHHHH--HHHhcCCEEEEee
Confidence 3468998843110 0 00 1123455443 2689999998763
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=95.31 E-value=0.025 Score=45.22 Aligned_cols=101 Identities=13% Similarity=0.014 Sum_probs=57.6
Q ss_pred CCCCeEEEECCC-cchHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEE----ecHHHHHHHHhhhcC
Q 021116 154 LRPGRWLDLYSG-TGSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHT----VRVETFLERAEQFVG 227 (317)
Q Consensus 154 ~~~~rVLDlgcG-tG~l~Ieaas-~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~----gD~~~~l~~~~~~~~ 227 (317)
.++++||=+||| .|.+++.+++ .|+ +|+++|.+++.+ +.|++ +|.. ..+.. .|..+....... .
T Consensus 25 ~~g~~vlV~G~G~vG~~~~~~ak~~Ga-~vi~v~~~~~r~-~~a~~----~ga~--~~~~~~~~~~~~~~~~~~~~~--~ 94 (170)
T d1e3ja2 25 QLGTTVLVIGAGPIGLVSVLAAKAYGA-FVVCTARSPRRL-EVAKN----CGAD--VTLVVDPAKEEESSIIERIRS--A 94 (170)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHH-HHHHH----TTCS--EEEECCTTTSCHHHHHHHHHH--H
T ss_pred CCCCEEEEEcccccchhhHhhHhhhcc-cccccchHHHHH-HHHHH----cCCc--EEEeccccccccchhhhhhhc--c
Confidence 468899988776 3444444444 576 799999999998 88875 3432 22221 122222222211 1
Q ss_pred CCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCC
Q 021116 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPL 271 (317)
Q Consensus 228 ~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~ 271 (317)
....+|+||-... . +..++... ++++++|++++.-..
T Consensus 95 ~g~g~D~vid~~g----~-~~~~~~a~--~~~~~~G~iv~~G~~ 131 (170)
T d1e3ja2 95 IGDLPNVTIDCSG----N-EKCITIGI--NITRTGGTLMLVGMG 131 (170)
T ss_dssp SSSCCSEEEECSC----C-HHHHHHHH--HHSCTTCEEEECSCC
T ss_pred cccCCceeeecCC----C-hHHHHHHH--HHHhcCCceEEEecC
Confidence 2356898876431 1 22333332 268999999876443
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=95.26 E-value=0.031 Score=45.22 Aligned_cols=93 Identities=15% Similarity=0.142 Sum_probs=58.4
Q ss_pred CCCCeEEEECCCcchHHHH---HH-HcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEe---cHHHHHHHHhhhc
Q 021116 154 LRPGRWLDLYSGTGSVGIE---AI-SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTV---RVETFLERAEQFV 226 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ie---aa-s~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~g---D~~~~l~~~~~~~ 226 (317)
.++.+||=+||| .+|+. ++ ..|+..|+.+|.++..+ +.+++ +|.. +++.. |+.+.+....
T Consensus 27 ~~g~~VlI~G~G--~iG~~~~~~ak~~g~~~v~~~~~~~~k~-~~a~~----~Ga~---~~i~~~~~~~~~~i~~~t--- 93 (174)
T d1f8fa2 27 TPASSFVTWGAG--AVGLSALLAAKVCGASIIIAVDIVESRL-ELAKQ----LGAT---HVINSKTQDPVAAIKEIT--- 93 (174)
T ss_dssp CTTCEEEEESCS--HHHHHHHHHHHHHTCSEEEEEESCHHHH-HHHHH----HTCS---EEEETTTSCHHHHHHHHT---
T ss_pred CCCCEEEEeCCC--HHHhhhhhcccccccceeeeeccHHHHH-HHHHH----cCCe---EEEeCCCcCHHHHHHHHc---
Confidence 468889988775 44433 33 46888899999999988 88764 5653 23433 3433333332
Q ss_pred CCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEE
Q 021116 227 GKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVE 268 (317)
Q Consensus 227 ~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~ 268 (317)
++.||+||-... ....++... ++++++|.+++.
T Consensus 94 --~gg~D~vid~~G-----~~~~~~~~~--~~~~~~G~i~~~ 126 (174)
T d1f8fa2 94 --DGGVNFALESTG-----SPEILKQGV--DALGILGKIAVV 126 (174)
T ss_dssp --TSCEEEEEECSC-----CHHHHHHHH--HTEEEEEEEEEC
T ss_pred --CCCCcEEEEcCC-----cHHHHHHHH--hcccCceEEEEE
Confidence 357999987531 123344332 278999999874
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.24 E-value=0.035 Score=44.71 Aligned_cols=94 Identities=11% Similarity=0.052 Sum_probs=57.8
Q ss_pred CCCCeEEEECC--CcchHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEE---ecHHHHHHHHhhhcC
Q 021116 154 LRPGRWLDLYS--GTGSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHT---VRVETFLERAEQFVG 227 (317)
Q Consensus 154 ~~~~rVLDlgc--GtG~l~Ieaas-~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~---gD~~~~l~~~~~~~~ 227 (317)
.++++||-.|+ |.|.+++.+++ .|+ +|++++.+++.. +.++ .+|.+. ++. .|..+.+....
T Consensus 27 ~~g~~VlV~Ga~G~vG~~aiq~a~~~G~-~vi~~~~~~~~~-~~~~----~~Ga~~---vi~~~~~~~~~~i~~~t---- 93 (174)
T d1yb5a2 27 KAGESVLVHGASGGVGLAACQIARAYGL-KILGTAGTEEGQ-KIVL----QNGAHE---VFNHREVNYIDKIKKYV---- 93 (174)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHH-HHHH----HTTCSE---EEETTSTTHHHHHHHHH----
T ss_pred CCCCEEEEEeccccccccccccccccCc-cccccccccccc-cccc----ccCccc---ccccccccHHHHhhhhh----
Confidence 46889999986 34555555554 576 699999999887 7775 357642 332 23433333322
Q ss_pred CCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEE
Q 021116 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVE 268 (317)
Q Consensus 228 ~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~ 268 (317)
....+|+|+-.. + .+.++... +.++++|+++..
T Consensus 94 ~~~g~d~v~d~~----g--~~~~~~~~--~~l~~~G~iv~~ 126 (174)
T d1yb5a2 94 GEKGIDIIIEML----A--NVNLSKDL--SLLSHGGRVIVV 126 (174)
T ss_dssp CTTCEEEEEESC----H--HHHHHHHH--HHEEEEEEEEEC
T ss_pred ccCCceEEeecc----c--HHHHHHHH--hccCCCCEEEEE
Confidence 245699888642 1 22344332 268999998874
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.94 E-value=0.0061 Score=49.33 Aligned_cols=96 Identities=14% Similarity=-0.003 Sum_probs=57.3
Q ss_pred CCCCeEEEECCC-cchHHHHHH-HcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEE-ecHHHHHHHHhhhcCCCC
Q 021116 154 LRPGRWLDLYSG-TGSVGIEAI-SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHT-VRVETFLERAEQFVGKDG 230 (317)
Q Consensus 154 ~~~~rVLDlgcG-tG~l~Ieaa-s~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~-gD~~~~l~~~~~~~~~~~ 230 (317)
.++++||-+||| .|.+++.++ ..|+ +|+++|.+++.+ +.+++ +|.+ .++. .+-.++.... .+
T Consensus 26 ~~g~~vlI~GaG~vG~~a~q~ak~~G~-~vi~~~~~~~k~-~~a~~----lGa~---~~i~~~~~~~~~~~~------~~ 90 (168)
T d1piwa2 26 GPGKKVGIVGLGGIGSMGTLISKAMGA-ETYVISRSSRKR-EDAMK----MGAD---HYIATLEEGDWGEKY------FD 90 (168)
T ss_dssp STTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSSTTH-HHHHH----HTCS---EEEEGGGTSCHHHHS------CS
T ss_pred CCCCEEEEECCCCcchhHHHHhhhccc-cccccccchhHH-HHhhc----cCCc---EEeeccchHHHHHhh------hc
Confidence 478999999886 455555544 3576 799999999988 87764 5653 2333 2222333322 36
Q ss_pred CccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 231 PFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 231 ~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
.||+|+..-.-.... .++.. .+.++++|++++.-
T Consensus 91 ~~d~vi~~~~~~~~~---~~~~~--~~~l~~~G~iv~~G 124 (168)
T d1piwa2 91 TFDLIVVCASSLTDI---DFNIM--PKAMKVGGRIVSIS 124 (168)
T ss_dssp CEEEEEECCSCSTTC---CTTTG--GGGEEEEEEEEECC
T ss_pred ccceEEEEecCCccc---hHHHH--HHHhhccceEEEec
Confidence 799888632111100 11111 13789999998753
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.73 E-value=0.13 Score=41.05 Aligned_cols=104 Identities=8% Similarity=-0.114 Sum_probs=58.8
Q ss_pred CCCCeEEEECCCcchHH-HHHH-HcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEE-EecHHHHHHHHhhhcCCCC
Q 021116 154 LRPGRWLDLYSGTGSVG-IEAI-SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH-TVRVETFLERAEQFVGKDG 230 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~-Ieaa-s~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii-~gD~~~~l~~~~~~~~~~~ 230 (317)
.++++||=+|||...+. +.++ .+|+.+|+++|.+++.+ +.|++ +|.+. +... ..|..+....... ....
T Consensus 25 ~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl-~~a~~----~Ga~~-~~~~~~~~~~~~~~~~~~--~~g~ 96 (171)
T d1pl8a2 25 TLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRL-SKAKE----IGADL-VLQISKESPQEIARKVEG--QLGC 96 (171)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHH-HHHHH----TTCSE-EEECSSCCHHHHHHHHHH--HHTS
T ss_pred CCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHH-HHHHH----hCCcc-cccccccccccccccccc--cCCC
Confidence 46788988887543332 2223 46888899999999998 87764 46532 1111 1232222221110 0135
Q ss_pred CccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCCC
Q 021116 231 PFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 231 ~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~ 272 (317)
.+|+||-.-. . +..++... ..++++|++++.-...
T Consensus 97 g~Dvvid~~G----~-~~~~~~a~--~~~~~gG~iv~~G~~~ 131 (171)
T d1pl8a2 97 KPEVTIECTG----A-EASIQAGI--YATRSGGTLVLVGLGS 131 (171)
T ss_dssp CCSEEEECSC----C-HHHHHHHH--HHSCTTCEEEECSCCC
T ss_pred CceEEEeccC----C-chhHHHHH--HHhcCCCEEEEEecCC
Confidence 6899886431 1 22333332 2689999988765433
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=94.15 E-value=0.012 Score=51.66 Aligned_cols=104 Identities=11% Similarity=0.031 Sum_probs=56.8
Q ss_pred CCCCeEEEECCCcchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF 232 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~f 232 (317)
.++.+|+|||||.|..+-.++.+. ...|.++++--.-. + .-...+.++. +.+++...+....+ .....
T Consensus 65 ~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~-e-~P~~~~~~~~-ni~~~~~~~dv~~l--------~~~~~ 133 (257)
T d2p41a1 65 TPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGH-E-EPIPMSTYGW-NLVRLQSGVDVFFI--------PPERC 133 (257)
T ss_dssp CCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTS-C-CCCCCCSTTG-GGEEEECSCCTTTS--------CCCCC
T ss_pred cCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCccc-c-CCcccccccc-ccccchhhhhHHhc--------CCCcC
Confidence 356789999999999998887663 23577777731110 0 0001112221 23444444322111 24679
Q ss_pred cEEEECCCCCCcc----HHHHHHHHH-HcCCcCCCeEEEEE
Q 021116 233 DYMSVTPPYTAVD----YEVLMAQIS-KSALVGKDSFIVVE 268 (317)
Q Consensus 233 DlV~~dPPy~~~~----~~~~l~~L~-~~~lLkpgG~ivv~ 268 (317)
|+|++|.--+.+. ....++.|. ..++|++||-+++=
T Consensus 134 D~vlcDm~ess~~~~vd~~Rtl~vLela~~wLk~gg~FvvK 174 (257)
T d2p41a1 134 DTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVK 174 (257)
T ss_dssp SEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred CEEEeeCCCCCCCchhhhhhHHHHHHHHHHHcccCCEEEEE
Confidence 9999995212221 122222221 23599999988765
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=94.05 E-value=0.12 Score=41.94 Aligned_cols=97 Identities=12% Similarity=0.030 Sum_probs=58.7
Q ss_pred CCCCeEEEECCCc-chHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEE---ec--HHHHHHHHhhhc
Q 021116 154 LRPGRWLDLYSGT-GSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHT---VR--VETFLERAEQFV 226 (317)
Q Consensus 154 ~~~~rVLDlgcGt-G~l~Ieaas-~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~---gD--~~~~l~~~~~~~ 226 (317)
.++++||=+|||. |.+++.+++ .|+.+|+.+|.+++.+ +.+++ +|... ++. .| ........
T Consensus 27 ~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~-~~a~~----~Ga~~---~i~~~~~~~~~~~~~~~~---- 94 (174)
T d1e3ia2 27 TPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKF-PKAKA----LGATD---CLNPRELDKPVQDVITEL---- 94 (174)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGH-HHHHH----TTCSE---EECGGGCSSCHHHHHHHH----
T ss_pred CCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHH-HHHHH----hCCCc---ccCCccchhhhhhhHhhh----
Confidence 4688999998866 555555444 6888899999999987 77764 56532 222 12 22222222
Q ss_pred CCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCC-eEEEEEeC
Q 021116 227 GKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKD-SFIVVEYP 270 (317)
Q Consensus 227 ~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpg-G~ivv~~~ 270 (317)
....+|+||-.- +. +..++... +.++++ |.+++.-.
T Consensus 95 -~~~G~d~vie~~----G~-~~~~~~a~--~~~~~g~G~~v~vG~ 131 (174)
T d1e3ia2 95 -TAGGVDYSLDCA----GT-AQTLKAAV--DCTVLGWGSCTVVGA 131 (174)
T ss_dssp -HTSCBSEEEESS----CC-HHHHHHHH--HTBCTTTCEEEECCC
T ss_pred -hcCCCcEEEEec----cc-chHHHHHH--HHhhcCCeEEEecCC
Confidence 135799998642 12 23343332 267885 88877543
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=93.97 E-value=0.054 Score=43.17 Aligned_cols=100 Identities=11% Similarity=0.038 Sum_probs=59.1
Q ss_pred CCCCeEEEECCC--cchHHHHHH-HcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCC
Q 021116 154 LRPGRWLDLYSG--TGSVGIEAI-SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDG 230 (317)
Q Consensus 154 ~~~~rVLDlgcG--tG~l~Ieaa-s~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~ 230 (317)
.++++||=.||+ .|.+++.++ ..|+.+|+.+|.+++.+ +.+++ +|.. .++..+-.++.+...+. ...+
T Consensus 26 ~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~-~~~~~----~Ga~---~~i~~~~~~~~~~~~~~-~~~~ 96 (170)
T d1jvba2 26 DPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAV-EAAKR----AGAD---YVINASMQDPLAEIRRI-TESK 96 (170)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHH-HHHHH----HTCS---EEEETTTSCHHHHHHHH-TTTS
T ss_pred CCCCEEEEEeccccceeeeeecccccccccccccccchhhH-HHHHH----cCCc---eeeccCCcCHHHHHHHH-hhcc
Confidence 468899999863 344444433 46777899999999998 88764 4643 23333322222221111 1235
Q ss_pred CccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 231 PFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 231 ~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
.||+||-.-. -...++... +.++++|.+++.-
T Consensus 97 ~~d~vid~~g-----~~~~~~~a~--~~l~~~G~iv~~G 128 (170)
T d1jvba2 97 GVDAVIDLNN-----SEKTLSVYP--KALAKQGKYVMVG 128 (170)
T ss_dssp CEEEEEESCC-----CHHHHTTGG--GGEEEEEEEEECC
T ss_pred cchhhhcccc-----cchHHHhhh--hhcccCCEEEEec
Confidence 6998886431 133444332 3789999998763
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.26 E-value=0.29 Score=41.83 Aligned_cols=82 Identities=11% Similarity=0.034 Sum_probs=57.8
Q ss_pred CCCCeEEEECCCcchHHH----HHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHH------HHHHh
Q 021116 154 LRPGRWLDLYSGTGSVGI----EAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF------LERAE 223 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~I----eaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~------l~~~~ 223 (317)
++++.+|=-|+++| +|. .+++.|+ +|+.++.|++.+ +.+.+-++..+...++..+++|+.+. .+...
T Consensus 8 lk~Kv~lITGas~G-IG~aiA~~la~~G~-~Vv~~~r~~~~l-~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~ 84 (257)
T d1xg5a_ 8 WRDRLALVTGASGG-IGAAVARALVQQGL-KVVGCARTVGNI-EELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIR 84 (257)
T ss_dssp GTTCEEEEESTTSH-HHHHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCH-HHHHHHHHHHHCCC-EEEEEECCHHHH-HHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHH
Confidence 46889999998766 333 3456787 699999999998 77777777777666788888887542 11111
Q ss_pred hhcCCCCCccEEEECCCC
Q 021116 224 QFVGKDGPFDYMSVTPPY 241 (317)
Q Consensus 224 ~~~~~~~~fDlV~~dPPy 241 (317)
..-+..|++|.+..+
T Consensus 85 ---~~~g~iD~lVnnAg~ 99 (257)
T d1xg5a_ 85 ---SQHSGVDICINNAGL 99 (257)
T ss_dssp ---HHHCCCSEEEECCCC
T ss_pred ---HhcCCCCEEEecccc
Confidence 112679999987654
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=93.15 E-value=0.19 Score=39.55 Aligned_cols=91 Identities=13% Similarity=0.015 Sum_probs=53.2
Q ss_pred CCCCeEEEECCCcchHHHH---HHH-cCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEe---cHHHHHHHHhhhc
Q 021116 154 LRPGRWLDLYSGTGSVGIE---AIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTV---RVETFLERAEQFV 226 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ie---aas-~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~g---D~~~~l~~~~~~~ 226 (317)
.++++||=+||| .+|+. +++ .| .+|+++|.+++.+ +.+++ +|.+ .++.. |..+.+...
T Consensus 26 ~~g~~VlV~GaG--~vG~~~~~~ak~~G-~~Vi~~~~~~~~~-~~a~~----~Ga~---~~i~~~~~~~~~~~~~~---- 90 (166)
T d1llua2 26 RPGQWVAISGIG--GLGHVAVQYARAMG-LHVAAIDIDDAKL-ELARK----LGAS---LTVNARQEDPVEAIQRD---- 90 (166)
T ss_dssp CTTCEEEEECCS--HHHHHHHHHHHHTT-CEEEEEESCHHHH-HHHHH----TTCS---EEEETTTSCHHHHHHHH----
T ss_pred CCCCEEEEeecc--ccHHHHHHHHHHcC-CccceecchhhHH-Hhhhc----cCcc---ccccccchhHHHHHHHh----
Confidence 467888888764 45543 333 56 4899999999988 77753 5653 23332 333322222
Q ss_pred CCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEE
Q 021116 227 GKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVE 268 (317)
Q Consensus 227 ~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~ 268 (317)
...+|.++.+.. . ...++... +.|+++|++++.
T Consensus 91 --~~g~~~~i~~~~----~-~~~~~~~~--~~l~~~G~iv~~ 123 (166)
T d1llua2 91 --IGGAHGVLVTAV----S-NSAFGQAI--GMARRGGTIALV 123 (166)
T ss_dssp --HSSEEEEEECCS----C-HHHHHHHH--TTEEEEEEEEEC
T ss_pred --hcCCcccccccc----c-chHHHHHH--HHhcCCcEEEEE
Confidence 134565555531 1 23344333 489999999875
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=92.83 E-value=0.17 Score=40.83 Aligned_cols=100 Identities=14% Similarity=0.047 Sum_probs=55.4
Q ss_pred CCCCeEEEECCCcchH-HHHHH-HcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEec--HHHHHHHHhhhcCCC
Q 021116 154 LRPGRWLDLYSGTGSV-GIEAI-SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVR--VETFLERAEQFVGKD 229 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l-~Ieaa-s~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD--~~~~l~~~~~~~~~~ 229 (317)
.++++||=+|||...+ ++..+ ..|+.+|+++|.+++.+ +.+++ +|...-+.....| ..+..... .+
T Consensus 26 ~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl-~~a~~----lGa~~~i~~~~~d~~~~~~~~~~-----~~ 95 (174)
T d1p0fa2 26 TPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKF-PKAIE----LGATECLNPKDYDKPIYEVICEK-----TN 95 (174)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGH-HHHHH----TTCSEEECGGGCSSCHHHHHHHH-----TT
T ss_pred CCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHH-HHHHH----cCCcEEEcCCCchhHHHHHHHHh-----cC
Confidence 5789999998764322 22223 46888999999999998 88864 5653211111123 23332222 23
Q ss_pred CCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 230 GPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 230 ~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
..+|+||-.- +.-....+.+. .+++++|.+++.-
T Consensus 96 ~G~d~vid~~----g~~~~~~~~~~--~~~~~~G~~v~vG 129 (174)
T d1p0fa2 96 GGVDYAVECA----GRIETMMNALQ--STYCGSGVTVVLG 129 (174)
T ss_dssp SCBSEEEECS----CCHHHHHHHHH--TBCTTTCEEEECC
T ss_pred CCCcEEEEcC----CCchHHHHHHH--HHHHhcCceEEEE
Confidence 5699998753 12222222222 1345567777643
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=92.58 E-value=0.19 Score=40.05 Aligned_cols=96 Identities=7% Similarity=-0.032 Sum_probs=57.7
Q ss_pred CCCCeEEEECCCcchHH-HHHH-HcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEe--c-HHHHHHHHhhhcCC
Q 021116 154 LRPGRWLDLYSGTGSVG-IEAI-SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTV--R-VETFLERAEQFVGK 228 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~-Ieaa-s~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~g--D-~~~~l~~~~~~~~~ 228 (317)
.+++.||=.|||..... +.++ .+|+.+|+++|.+++.+ +.+++ +|.. +++.. | .....+.. .
T Consensus 31 ~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~-~~~~~----~ga~---~~i~~~~~~~~~~~~~~-----~ 97 (172)
T d1h2ba2 31 YPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKL-KLAER----LGAD---HVVDARRDPVKQVMELT-----R 97 (172)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHH-HHHHH----TTCS---EEEETTSCHHHHHHHHT-----T
T ss_pred CCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHH-HHHhh----cccc---eeecCcccHHHHHHHhh-----C
Confidence 46788999987543332 2333 46888899999999988 77764 4432 23432 2 22222211 2
Q ss_pred CCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 229 ~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
...+|+||-.-. . ...++... ..++++|++++.-
T Consensus 98 ~~g~d~vid~~g----~-~~~~~~a~--~~l~~~G~iv~~G 131 (172)
T d1h2ba2 98 GRGVNVAMDFVG----S-QATVDYTP--YLLGRMGRLIIVG 131 (172)
T ss_dssp TCCEEEEEESSC----C-HHHHHHGG--GGEEEEEEEEECC
T ss_pred CCCceEEEEecC----c-chHHHHHH--HHHhCCCEEEEEe
Confidence 345998887531 1 22344332 3789999998753
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=91.79 E-value=0.24 Score=39.32 Aligned_cols=96 Identities=7% Similarity=-0.032 Sum_probs=56.6
Q ss_pred CCCCeEEEECCC--cchHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEE---ecHHHHHHHHhhhcC
Q 021116 154 LRPGRWLDLYSG--TGSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHT---VRVETFLERAEQFVG 227 (317)
Q Consensus 154 ~~~~rVLDlgcG--tG~l~Ieaas-~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~---gD~~~~l~~~~~~~~ 227 (317)
.++++||=.|+| .|.+++.+++ .|+ +|++++.+++.. +.++ .+|.+ +++. .|+.+.+....
T Consensus 27 ~~g~~Vlv~ga~g~vG~~~iqlak~~Ga-~Vi~~~~s~~k~-~~~~----~lGa~---~vi~~~~~d~~~~v~~~t---- 93 (179)
T d1qora2 27 KPDEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGTAQKA-QSAL----KAGAW---QVINYREEDLVERLKEIT---- 93 (179)
T ss_dssp CTTCEEEESSTTBHHHHHHHHHHHHHTC-EEEEEESSHHHH-HHHH----HHTCS---EEEETTTSCHHHHHHHHT----
T ss_pred CCCCEEEEEccccccchHHHHHHHHhCC-eEeecccchHHH-HHHH----hcCCe---EEEECCCCCHHHHHHHHh----
Confidence 457888877544 4556666555 465 799999999987 7775 35653 2343 34444443332
Q ss_pred CCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 228 ~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
.+..+|+|+-.. ........+ ..++++|.+++.-.
T Consensus 94 ~g~g~d~v~d~~--g~~~~~~~~------~~l~~~G~~v~~g~ 128 (179)
T d1qora2 94 GGKKVRVVYDSV--GRDTWERSL------DCLQRRGLMVSFGN 128 (179)
T ss_dssp TTCCEEEEEECS--CGGGHHHHH------HTEEEEEEEEECCC
T ss_pred CCCCeEEEEeCc--cHHHHHHHH------HHHhcCCeeeeccc
Confidence 245688766432 111222222 26899998876443
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=91.67 E-value=0.35 Score=37.74 Aligned_cols=97 Identities=11% Similarity=-0.036 Sum_probs=55.3
Q ss_pred CCCCeEEEECCCcchH-HHHHHH-cCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCC
Q 021116 154 LRPGRWLDLYSGTGSV-GIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGP 231 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l-~Ieaas-~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~ 231 (317)
.++++||=.|||.-.+ .+.+++ .|+ +|+++|.+++.+ +.+++ +|.+.-+.....|....+.... ..
T Consensus 26 ~~g~~vlv~G~G~iG~~a~~~a~~~g~-~v~~~~~~~~r~-~~~k~----~Ga~~~~~~~~~~~~~~~~~~~------~~ 93 (168)
T d1rjwa2 26 KPGEWVAIYGIGGLGHVAVQYAKAMGL-NVVAVDIGDEKL-ELAKE----LGADLVVNPLKEDAAKFMKEKV------GG 93 (168)
T ss_dssp CTTCEEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHH-HHHHH----TTCSEEECTTTSCHHHHHHHHH------SS
T ss_pred CCCCEEEEeecccchhhhhHHHhcCCC-eEeccCCCHHHh-hhhhh----cCcceecccccchhhhhccccc------CC
Confidence 4688888887655332 223334 455 799999999998 77754 5653211111124444444332 44
Q ss_pred ccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 232 FDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 232 fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
+|.++.|..- ...++... +.++++|.+++.-
T Consensus 94 ~~~~v~~~~~-----~~~~~~a~--~~l~~~G~i~~~g 124 (168)
T d1rjwa2 94 VHAAVVTAVS-----KPAFQSAY--NSIRRGGACVLVG 124 (168)
T ss_dssp EEEEEESSCC-----HHHHHHHH--HHEEEEEEEEECC
T ss_pred CceEEeecCC-----HHHHHHHH--HHhccCCceEecc
Confidence 6666677531 22233322 2589999988854
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=91.48 E-value=0.91 Score=36.57 Aligned_cols=76 Identities=11% Similarity=0.017 Sum_probs=50.0
Q ss_pred CCCCCeEEEECCCcchHHH----HHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecH---HHHHHHHhhh
Q 021116 153 SLRPGRWLDLYSGTGSVGI----EAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRV---ETFLERAEQF 225 (317)
Q Consensus 153 ~~~~~rVLDlgcGtG~l~I----eaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~---~~~l~~~~~~ 225 (317)
+++++++|=.|++.| +|. .+++.|+ +|+.++.+++.+ +.+.+.+....- +.+...|+ .+.....
T Consensus 20 ~l~gK~vlItGasgG-IG~~ia~~la~~G~-~V~~~~r~~~~~-~~~~~~~~~~~~---~~~~~~d~~~~~~~~~~~--- 90 (191)
T d1luaa1 20 SVKGKKAVVLAGTGP-VGMRSAALLAGEGA-EVVLCGRKLDKA-QAAADSVNKRFK---VNVTAAETADDASRAEAV--- 90 (191)
T ss_dssp CCTTCEEEEETTTSH-HHHHHHHHHHHTTC-EEEEEESSHHHH-HHHHHHHHHHHT---CCCEEEECCSHHHHHHHT---
T ss_pred CCCCCEEEEECCCHH-HHHHHHHHHHhhcc-chhhcccchHHH-HHHHHHHHhccc---hhhhhhhcccHHHHHHHh---
Confidence 478999999986554 433 3456786 799999999998 777777665421 22344443 3332222
Q ss_pred cCCCCCccEEEECCCC
Q 021116 226 VGKDGPFDYMSVTPPY 241 (317)
Q Consensus 226 ~~~~~~fDlV~~dPPy 241 (317)
+..|++|.+...
T Consensus 91 ----~~iDilin~Ag~ 102 (191)
T d1luaa1 91 ----KGAHFVFTAGAI 102 (191)
T ss_dssp ----TTCSEEEECCCT
T ss_pred ----cCcCeeeecCcc
Confidence 568999988643
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.75 E-value=0.69 Score=39.14 Aligned_cols=85 Identities=11% Similarity=0.018 Sum_probs=59.2
Q ss_pred CCCCCeEEEECCCcch---HHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHH---HHhhhc
Q 021116 153 SLRPGRWLDLYSGTGS---VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE---RAEQFV 226 (317)
Q Consensus 153 ~~~~~rVLDlgcGtG~---l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~---~~~~~~ 226 (317)
++.|+.+|=-|++.|. ++.++++.|+ +|+.+|.+++.+ +.+.++++..|- ++..+.+|+.+... ......
T Consensus 4 ~l~Gkv~lITGas~GIG~~ia~~la~~G~-~V~l~~r~~~~l-~~~~~~~~~~~~--~~~~~~~Dvs~~~~v~~~~~~i~ 79 (244)
T d1yb1a_ 4 SVTGEIVLITGAGHGIGRLTAYEFAKLKS-KLVLWDINKHGL-EETAAKCKGLGA--KVHTFVVDCSNREDIYSSAKKVK 79 (244)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHH-HHHHHHHHhcCC--cEEEEEeeCCCHHHHHHHHHHHH
Confidence 4678899988988873 3445667887 699999999998 888888876653 47888888765421 111111
Q ss_pred CCCCCccEEEECCCC
Q 021116 227 GKDGPFDYMSVTPPY 241 (317)
Q Consensus 227 ~~~~~fDlV~~dPPy 241 (317)
...+..|+++.+.-.
T Consensus 80 ~~~g~idilinnag~ 94 (244)
T d1yb1a_ 80 AEIGDVSILVNNAGV 94 (244)
T ss_dssp HHTCCCSEEEECCCC
T ss_pred HHcCCCceeEeeccc
Confidence 123678999987643
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=90.74 E-value=1.1 Score=37.99 Aligned_cols=84 Identities=11% Similarity=0.003 Sum_probs=54.7
Q ss_pred CCCCeEEEECCCcch---HHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHH---HHhhhcC
Q 021116 154 LRPGRWLDLYSGTGS---VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE---RAEQFVG 227 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~---l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~---~~~~~~~ 227 (317)
++++.+|=-|++.|. ++..+++.|+ +|+.+|.+++.+ +.+.+.+...+...++..+.+|+.+... ...+...
T Consensus 2 l~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l-~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~ 79 (258)
T d1iy8a_ 2 FTDRVVLITGGGSGLGRATAVRLAAEGA-KLSLVDVSSEGL-EASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTE 79 (258)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHH-HHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHH
Confidence 467888888877663 3444667787 699999999998 7777766655555567888888644221 0010011
Q ss_pred CCCCccEEEECC
Q 021116 228 KDGPFDYMSVTP 239 (317)
Q Consensus 228 ~~~~fDlV~~dP 239 (317)
.-+..|+++.|.
T Consensus 80 ~~G~iDiLVnnA 91 (258)
T d1iy8a_ 80 RFGRIDGFFNNA 91 (258)
T ss_dssp HHSCCSEEEECC
T ss_pred HhCCCCEEEECC
Confidence 126789999764
|
| >d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: FkbM-like domain: Methyltransferase FkbM species: Methylobacillus flagellatus [TaxId: 405]
Probab=90.73 E-value=0.26 Score=45.34 Aligned_cols=50 Identities=18% Similarity=0.122 Sum_probs=41.0
Q ss_pred CCCCeEEEECCCcchHHHHHHH--cC-CCEEEEEeCCHHHHHHHHHHhHHHhCC
Q 021116 154 LRPGRWLDLYSGTGSVGIEAIS--RG-CSEVHFVEMDPWVVSNVLIPNLEWTGF 204 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas--~G-a~~V~aVDin~~al~~~ar~N~~~~gl 204 (317)
.++..++|+||-.|..++.+++ .+ ..+|+++|.++... +.+++|++.++.
T Consensus 211 ~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~-~~LkkNi~~n~~ 263 (395)
T d2py6a1 211 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINL-QTLQNVLRRYTD 263 (395)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHH-HHHHHHHHHTTT
T ss_pred CCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHH-HHHHHHHHhccc
Confidence 3578999999999988876543 22 35899999999998 999999987754
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=90.34 E-value=0.54 Score=37.68 Aligned_cols=101 Identities=11% Similarity=-0.015 Sum_probs=54.4
Q ss_pred CCCCeEEEECCCcchH-HHHHH-HcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecH-HHHHHHHhhhcCCCC
Q 021116 154 LRPGRWLDLYSGTGSV-GIEAI-SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRV-ETFLERAEQFVGKDG 230 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l-~Ieaa-s~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~-~~~l~~~~~~~~~~~ 230 (317)
.+++.|+=.|||...+ ++..+ ..|+.+|+++|.+++.+ +.|++ +|...-+.....|. ........ ...
T Consensus 28 ~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl-~~Ak~----~GA~~~in~~~~~~~~~~~~~~~----~g~ 98 (176)
T d1d1ta2 28 KPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKF-EKAMA----VGATECISPKDSTKPISEVLSEM----TGN 98 (176)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGH-HHHHH----HTCSEEECGGGCSSCHHHHHHHH----HTS
T ss_pred CCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHH-HHHHh----cCCcEEECccccchHHHHHHHHh----ccc
Confidence 4688899888753322 23333 46888999999999998 88864 45432111111221 11111111 135
Q ss_pred CccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 231 PFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 231 ~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
.+|+|+-.- +......+.+. .+.+.+|.+++.-
T Consensus 99 G~d~vi~~~----g~~~~~~~a~~--~~~~~~G~~v~vG 131 (176)
T d1d1ta2 99 NVGYTFEVI----GHLETMIDALA--SCHMNYGTSVVVG 131 (176)
T ss_dssp CCCEEEECS----CCHHHHHHHHT--TSCTTTCEEEECS
T ss_pred cceEEEEeC----CchHHHHHHHH--HhhcCCeEEEEEE
Confidence 699888763 22222233332 2445657777653
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=89.61 E-value=0.3 Score=38.78 Aligned_cols=97 Identities=10% Similarity=-0.014 Sum_probs=54.4
Q ss_pred CCCCeEEEEC--CCcchHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCC
Q 021116 154 LRPGRWLDLY--SGTGSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDG 230 (317)
Q Consensus 154 ~~~~rVLDlg--cGtG~l~Ieaas-~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~ 230 (317)
.++++||=.| .|+|.+++.+++ .|+ +|+++..+++.. +.++ .+|.+.-+.....|+.+.+.... .+.
T Consensus 24 ~~g~~VlI~ga~g~vG~~~iqla~~~g~-~vi~~~~~~~~~-~~l~----~~Ga~~vi~~~~~~~~~~v~~~t----~~~ 93 (183)
T d1pqwa_ 24 SPGERVLIHSATGGVGMAAVSIAKMIGA-RIYTTAGSDAKR-EMLS----RLGVEYVGDSRSVDFADEILELT----DGY 93 (183)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHHTC-EEEEEESSHHHH-HHHH----TTCCSEEEETTCSTHHHHHHHHT----TTC
T ss_pred CCCCEEEEECCCCCcccccchhhccccc-cceeeecccccc-cccc----cccccccccCCccCHHHHHHHHh----CCC
Confidence 4578888765 233344444443 566 688888888776 7765 35653211111234444443332 235
Q ss_pred CccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEE
Q 021116 231 PFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVE 268 (317)
Q Consensus 231 ~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~ 268 (317)
.||+||-.. . + +.++... +.|+++|+++..
T Consensus 94 g~d~v~d~~--g-~---~~~~~~~--~~l~~~G~~v~~ 123 (183)
T d1pqwa_ 94 GVDVVLNSL--A-G---EAIQRGV--QILAPGGRFIEL 123 (183)
T ss_dssp CEEEEEECC--C-T---HHHHHHH--HTEEEEEEEEEC
T ss_pred CEEEEEecc--c-c---hHHHHHH--HHhcCCCEEEEE
Confidence 699999643 1 1 2333333 278999998875
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=88.84 E-value=1.5 Score=37.41 Aligned_cols=84 Identities=11% Similarity=0.025 Sum_probs=56.1
Q ss_pred CCCCeEEEECCCcch---HHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCC-CceEEEEecHHHHHH--H-Hhhhc
Q 021116 154 LRPGRWLDLYSGTGS---VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFL-DVSSIHTVRVETFLE--R-AEQFV 226 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~---l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~-~~v~ii~gD~~~~l~--~-~~~~~ 226 (317)
++|+++|=-|+++|. ++..+++.|+ +|+.+|.+++.+ +.+.+.++..+.. .++..+.+|+.+... . ..+..
T Consensus 2 L~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l-~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 79 (274)
T d1xhla_ 2 FSGKSVIITGSSNGIGRSAAVIFAKEGA-QVTITGRNEDRL-EETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTL 79 (274)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHH-HHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHH
Confidence 467888888877662 2334556787 699999999998 8888888877654 468888998654321 0 11011
Q ss_pred CCCCCccEEEECC
Q 021116 227 GKDGPFDYMSVTP 239 (317)
Q Consensus 227 ~~~~~fDlV~~dP 239 (317)
..-+..|+++.+.
T Consensus 80 ~~~G~iDilVnnA 92 (274)
T d1xhla_ 80 AKFGKIDILVNNA 92 (274)
T ss_dssp HHHSCCCEEEECC
T ss_pred HHcCCceEEEeec
Confidence 1125789999863
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=87.92 E-value=1.6 Score=36.77 Aligned_cols=83 Identities=14% Similarity=0.056 Sum_probs=54.8
Q ss_pred CCCCeEEEECCCcchHHH----HHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCC-CceEEEEecHHHHHH--H-Hhhh
Q 021116 154 LRPGRWLDLYSGTGSVGI----EAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFL-DVSSIHTVRVETFLE--R-AEQF 225 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~I----eaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~-~~v~ii~gD~~~~l~--~-~~~~ 225 (317)
++++.+|=-|++.| +|. .+++.|+ +|+.+|.+++.+ +.+.+.++..+.. .++.++.+|+.+... . ....
T Consensus 3 l~gKvalVTGas~G-IG~aia~~la~~Ga-~V~~~~r~~~~l-~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~ 79 (264)
T d1spxa_ 3 FAEKVAIITGSSNG-IGRATAVLFAREGA-KVTITGRHAERL-EETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTT 79 (264)
T ss_dssp TTTCEEEETTTTSH-HHHHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCCEEEEeCcCCH-HHHHHHHHHHHCCC-EEEEEECCHHHH-HHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHH
Confidence 46788888887655 333 3556787 699999999998 8888888777654 458889988743211 0 0000
Q ss_pred cCCCCCccEEEECC
Q 021116 226 VGKDGPFDYMSVTP 239 (317)
Q Consensus 226 ~~~~~~fDlV~~dP 239 (317)
...-+..|+++.+.
T Consensus 80 ~~~~g~iDilvnnA 93 (264)
T d1spxa_ 80 LGKFGKLDILVNNA 93 (264)
T ss_dssp HHHHSCCCEEEECC
T ss_pred HHHhCCCCEeeccc
Confidence 11126789999763
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=87.85 E-value=2.3 Score=35.84 Aligned_cols=82 Identities=11% Similarity=0.116 Sum_probs=54.2
Q ss_pred CCCCeEEEECCCcch---HHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHH---HHHhhhcC
Q 021116 154 LRPGRWLDLYSGTGS---VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL---ERAEQFVG 227 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~---l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l---~~~~~~~~ 227 (317)
++|+++|=-|+++|. ++..+++.|+ +|+.+|.|++.+ +.+.+.++..|. ++..+.+|+.+.. ........
T Consensus 3 L~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l-~~~~~~~~~~g~--~~~~~~~Dv~~~~~v~~~~~~~~~ 78 (260)
T d1zema1 3 FNGKVCLVTGAGGNIGLATALRLAEEGT-AIALLDMNREAL-EKAEASVREKGV--EARSYVCDVTSEEAVIGTVDSVVR 78 (260)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHHHTTTS--CEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHH-HHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHHHH
Confidence 568899988876652 2334556786 699999999998 888877776664 4788888875321 11110001
Q ss_pred CCCCccEEEECC
Q 021116 228 KDGPFDYMSVTP 239 (317)
Q Consensus 228 ~~~~fDlV~~dP 239 (317)
.-+..|+++.+.
T Consensus 79 ~~g~iDilVnna 90 (260)
T d1zema1 79 DFGKIDFLFNNA 90 (260)
T ss_dssp HHSCCCEEEECC
T ss_pred HhCCCCeehhhh
Confidence 126799999764
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=87.77 E-value=1.7 Score=36.80 Aligned_cols=83 Identities=12% Similarity=0.011 Sum_probs=55.0
Q ss_pred CCCCeEEEECCCcc---hHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCC-CceEEEEecHHHHHH--H-Hhhhc
Q 021116 154 LRPGRWLDLYSGTG---SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFL-DVSSIHTVRVETFLE--R-AEQFV 226 (317)
Q Consensus 154 ~~~~rVLDlgcGtG---~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~-~~v~ii~gD~~~~l~--~-~~~~~ 226 (317)
++++++|=-|++.| .++..+++.|+ +|+.+|.+++.+ +.+.+.++..+.. .++..+.+|+.+... . ..+..
T Consensus 3 L~gK~alVTGas~GIG~aia~~la~~Ga-~V~l~~r~~~~l-~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~ 80 (272)
T d1xkqa_ 3 FSNKTVIITGSSNGIGRTTAILFAQEGA-NVTITGRSSERL-EETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTL 80 (272)
T ss_dssp TTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCCEEEEeCcCcHHHHHHHHHHHHCCC-EEEEEECCHHHH-HHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHH
Confidence 46888888887665 22334556787 699999999998 8888888776654 357888888654221 0 10011
Q ss_pred CCCCCccEEEEC
Q 021116 227 GKDGPFDYMSVT 238 (317)
Q Consensus 227 ~~~~~fDlV~~d 238 (317)
..-+..|+++.|
T Consensus 81 ~~~g~iDilvnn 92 (272)
T d1xkqa_ 81 KQFGKIDVLVNN 92 (272)
T ss_dssp HHHSCCCEEEEC
T ss_pred HHhCCceEEEeC
Confidence 112678999986
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=87.49 E-value=0.7 Score=36.24 Aligned_cols=96 Identities=16% Similarity=0.007 Sum_probs=55.5
Q ss_pred CCCCeEEEECCC-cchHHHHHH-HcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEE-----ecHHHHHHHHhhhc
Q 021116 154 LRPGRWLDLYSG-TGSVGIEAI-SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHT-----VRVETFLERAEQFV 226 (317)
Q Consensus 154 ~~~~rVLDlgcG-tG~l~Ieaa-s~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~-----gD~~~~l~~~~~~~ 226 (317)
.++++||=.||| .|.+++.++ ..|+..|+++|.+++.+ +.++ .+|... ++. .++.......
T Consensus 27 ~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~-~~ak----~lGa~~---~i~~~~~~~~~~~~~~~~---- 94 (176)
T d2fzwa2 27 EPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKF-ARAK----EFGATE---CINPQDFSKPIQEVLIEM---- 94 (176)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGH-HHHH----HHTCSE---EECGGGCSSCHHHHHHHH----
T ss_pred CCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHH-HHHH----HhCCcE---EEeCCchhhHHHHHHHHH----
Confidence 478899888776 223333333 46888999999999887 7776 456532 222 1233333322
Q ss_pred CCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 227 GKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 227 ~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
....+|+||-.. +. ...++.... ++++||.+++..
T Consensus 95 -~~~g~D~vid~~----G~-~~~~~~~~~--~~~~g~~~~~v~ 129 (176)
T d2fzwa2 95 -TDGGVDYSFECI----GN-VKVMRAALE--ACHKGWGVSVVV 129 (176)
T ss_dssp -TTSCBSEEEECS----CC-HHHHHHHHH--TBCTTTCEEEEC
T ss_pred -cCCCCcEeeecC----CC-HHHHHHHHH--hhcCCceeEEEE
Confidence 235699998753 11 223333322 677776665543
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=87.37 E-value=0.76 Score=36.58 Aligned_cols=95 Identities=13% Similarity=-0.010 Sum_probs=54.7
Q ss_pred CCCCeEEEECCCc--chHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEe---cHHHHHHHHhhhcC
Q 021116 154 LRPGRWLDLYSGT--GSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTV---RVETFLERAEQFVG 227 (317)
Q Consensus 154 ~~~~rVLDlgcGt--G~l~Ieaas-~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~g---D~~~~l~~~~~~~~ 227 (317)
.++++||=.|++. |..++.+++ .|+ +|+++..+++.. +.+++ .|... ++.. +..+......
T Consensus 28 ~~G~~VlV~ga~ggvG~~aiqlak~~Ga-~vi~~~~~~~~~-~~~~~----~Ga~~---vi~~~~~~~~~~~~~~~---- 94 (182)
T d1v3va2 28 KGGETVLVSAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKI-AYLKQ----IGFDA---AFNYKTVNSLEEALKKA---- 94 (182)
T ss_dssp CSSCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHH-HHHHH----TTCSE---EEETTSCSCHHHHHHHH----
T ss_pred CCCCEEEEEeCCCchhHHHHHHHHccCC-EEEEeCCCHHHH-HHHHh----hhhhh---hcccccccHHHHHHHHh----
Confidence 4688998665533 344444455 455 899999999887 77765 35432 2322 2222222221
Q ss_pred CCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 228 ~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
....+|+||=.- + .+.++... ..|+++|.+++.-
T Consensus 95 ~~~Gvd~v~D~v----G--~~~~~~~~--~~l~~~G~~v~~G 128 (182)
T d1v3va2 95 SPDGYDCYFDNV----G--GEFLNTVL--SQMKDFGKIAICG 128 (182)
T ss_dssp CTTCEEEEEESS----C--HHHHHHHG--GGEEEEEEEEECC
T ss_pred hcCCCceeEEec----C--chhhhhhh--hhccCCCeEEeec
Confidence 235699976531 1 23444443 3799999998753
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.62 E-value=4 Score=34.01 Aligned_cols=84 Identities=13% Similarity=0.018 Sum_probs=52.0
Q ss_pred CCCeEEEECCCcchHHH----HHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHH---HHhhhcC
Q 021116 155 RPGRWLDLYSGTGSVGI----EAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE---RAEQFVG 227 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~I----eaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~---~~~~~~~ 227 (317)
+|+.+|=-|++.| +|. .+++.|+ +|+.+|.+.+.+ +.+.+.+....-..++.++.+|+.+... ...+...
T Consensus 2 ~GKvalITGas~G-IG~aia~~la~~Ga-~V~i~~r~~~~~-~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 78 (254)
T d2gdza1 2 NGKVALVTGAAQG-IGRAFAEALLLKGA-KVALVDWNLEAG-VQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVD 78 (254)
T ss_dssp TTCEEEEETTTSH-HHHHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHCCC-EEEEEECCHHHH-HHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHH
Confidence 4778888887655 444 3456786 699999999987 6665555432222457888888754321 0100111
Q ss_pred CCCCccEEEECCCC
Q 021116 228 KDGPFDYMSVTPPY 241 (317)
Q Consensus 228 ~~~~fDlV~~dPPy 241 (317)
.-+..|+++.+.-.
T Consensus 79 ~~G~iDilVnnAg~ 92 (254)
T d2gdza1 79 HFGRLDILVNNAGV 92 (254)
T ss_dssp HHSCCCEEEECCCC
T ss_pred HcCCcCeecccccc
Confidence 12679999987643
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=86.40 E-value=2.1 Score=35.87 Aligned_cols=83 Identities=14% Similarity=0.063 Sum_probs=55.4
Q ss_pred CCCCeEEEECCCcchHHHH----HHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHH---HHhhhc
Q 021116 154 LRPGRWLDLYSGTGSVGIE----AISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE---RAEQFV 226 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ie----aas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~---~~~~~~ 226 (317)
++++.+|=-|++.| +|.+ +++.|+ +|+.+|.|++.+ +.+.+.++..|. ++..+..|+.+... ......
T Consensus 8 lenKvalITGas~G-IG~a~a~~la~~Ga-~V~~~~r~~~~l-~~~~~~l~~~g~--~~~~~~~Dvt~~~~v~~~~~~~~ 82 (251)
T d2c07a1 8 GENKVALVTGAGRG-IGREIAKMLAKSVS-HVICISRTQKSC-DSVVDEIKSFGY--ESSGYAGDVSKKEEISEVINKIL 82 (251)
T ss_dssp CSSCEEEEESTTSH-HHHHHHHHHTTTSS-EEEEEESSHHHH-HHHHHHHHTTTC--CEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCH-HHHHHHHHHHHcCC-EEEEEECCHHHH-HHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHHH
Confidence 56888888887655 5544 345666 799999999998 888777776664 47888998754321 011111
Q ss_pred CCCCCccEEEECCCC
Q 021116 227 GKDGPFDYMSVTPPY 241 (317)
Q Consensus 227 ~~~~~fDlV~~dPPy 241 (317)
..-+..|+++.+...
T Consensus 83 ~~~g~iDilvnnag~ 97 (251)
T d2c07a1 83 TEHKNVDILVNNAGI 97 (251)
T ss_dssp HHCSCCCEEEECCCC
T ss_pred HhcCCceeeeecccc
Confidence 123689999987654
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=86.26 E-value=2.5 Score=32.68 Aligned_cols=95 Identities=14% Similarity=0.198 Sum_probs=55.5
Q ss_pred eEEEECCCcchHHHH--HHHcCCCEEEEEeCCHHHHHHHHHHhHHHh----CCC--CceEEEEecHHHHHHHHhhhcCCC
Q 021116 158 RWLDLYSGTGSVGIE--AISRGCSEVHFVEMDPWVVSNVLIPNLEWT----GFL--DVSSIHTVRVETFLERAEQFVGKD 229 (317)
Q Consensus 158 rVLDlgcGtG~l~Ie--aas~Ga~~V~aVDin~~al~~~ar~N~~~~----gl~--~~v~ii~gD~~~~l~~~~~~~~~~ 229 (317)
++-=+|||.-..++. +++.|. +|+.+|.+++.+ +.++.+-... +.. ........|..+.+
T Consensus 3 ~iaIiGaG~~G~~~A~~l~~~G~-~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~---------- 70 (184)
T d1bg6a2 3 TYAVLGLGNGGHAFAAYLALKGQ-SVLAWDIDAQRI-KEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAV---------- 70 (184)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHH-HHHHHHTSEEEESSSCCEEECCSEEESCHHHHH----------
T ss_pred EEEEECccHHHHHHHHHHHHCCC-EEEEEECCHHHH-HHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHh----------
Confidence 455566655544443 335665 799999999887 6665432111 010 00112334555443
Q ss_pred CCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEE
Q 021116 230 GPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVE 268 (317)
Q Consensus 230 ~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~ 268 (317)
...|+||+--|- ...+..++.+. +.++++.++++.
T Consensus 71 ~~aD~iii~v~~--~~~~~~~~~i~--~~l~~~~~iv~~ 105 (184)
T d1bg6a2 71 KDADVILIVVPA--IHHASIAANIA--SYISEGQLIILN 105 (184)
T ss_dssp TTCSEEEECSCG--GGHHHHHHHHG--GGCCTTCEEEES
T ss_pred cCCCEEEEEEch--hHHHHHHHHhh--hccCCCCEEEEe
Confidence 568999975432 24677777776 478888877654
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=86.12 E-value=1.1 Score=35.41 Aligned_cols=91 Identities=13% Similarity=0.087 Sum_probs=52.4
Q ss_pred CCCCeEEEECC--CcchHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCC
Q 021116 154 LRPGRWLDLYS--GTGSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDG 230 (317)
Q Consensus 154 ~~~~rVLDlgc--GtG~l~Ieaas-~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~ 230 (317)
.++++||=.|+ |.|.+++.+++ +|+ +|++++.+++.. +.+++ +|.+. .+...|....... ..
T Consensus 26 ~~g~~VlI~ga~G~vG~~aiqlak~~G~-~vi~~~~~~~~~-~~~~~----lGa~~--~i~~~~~~~~~~~-------~~ 90 (171)
T d1iz0a2 26 RPGEKVLVQAAAGALGTAAVQVARAMGL-RVLAAASRPEKL-ALPLA----LGAEE--AATYAEVPERAKA-------WG 90 (171)
T ss_dssp CTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSGGGS-HHHHH----TTCSE--EEEGGGHHHHHHH-------TT
T ss_pred CCCCEEEEEeccccchhhhhhhhccccc-cccccccccccc-ccccc----cccce--eeehhhhhhhhhc-------cc
Confidence 46888887763 22444555454 566 799999998877 77653 56542 1222232222211 35
Q ss_pred CccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEE
Q 021116 231 PFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVE 268 (317)
Q Consensus 231 ~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~ 268 (317)
.+|+|| |. -+ ..++.. + +.|+++|.++..
T Consensus 91 g~D~v~-d~-~G-~~~~~~---~---~~l~~~G~~v~~ 119 (171)
T d1iz0a2 91 GLDLVL-EV-RG-KEVEES---L---GLLAHGGRLVYI 119 (171)
T ss_dssp SEEEEE-EC-SC-TTHHHH---H---TTEEEEEEEEEC
T ss_pred cccccc-cc-cc-hhHHHH---H---HHHhcCCcEEEE
Confidence 699886 32 11 233322 2 378999998864
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=86.11 E-value=2.2 Score=35.98 Aligned_cols=80 Identities=18% Similarity=0.107 Sum_probs=51.6
Q ss_pred CCCCeEEEECCCcchHHH----HHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHH--HH-Hhhhc
Q 021116 154 LRPGRWLDLYSGTGSVGI----EAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL--ER-AEQFV 226 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~I----eaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l--~~-~~~~~ 226 (317)
++++.+|=-|+++| +|. .+++.|+ +|+.+|.+++.+ +.+.+.+.. .+++.++.+|+.+.. .. .....
T Consensus 4 L~gKvalITGas~G-IG~aia~~la~~Ga-~V~i~~r~~~~~-~~~~~~l~~---~~~~~~~~~Dv~~~~~v~~~~~~~~ 77 (268)
T d2bgka1 4 LQDKVAIITGGAGG-IGETTAKLFVRYGA-KVVIADIADDHG-QKVCNNIGS---PDVISFVHCDVTKDEDVRNLVDTTI 77 (268)
T ss_dssp TTTCEEEEESTTSH-HHHHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHHCC---TTTEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcH-HHHHHHHHHHHCCC-EEEEEECCHHHH-HHHHHHhcC---CCceEEEEccCCCHHHHHHHHHHHH
Confidence 57889999997766 443 3456776 699999999988 766666543 345778888875431 11 11001
Q ss_pred CCCCCccEEEECC
Q 021116 227 GKDGPFDYMSVTP 239 (317)
Q Consensus 227 ~~~~~fDlV~~dP 239 (317)
..-+..|+++.+.
T Consensus 78 ~~~g~iD~lVnnA 90 (268)
T d2bgka1 78 AKHGKLDIMFGNV 90 (268)
T ss_dssp HHHSCCCEEEECC
T ss_pred HHcCCcceecccc
Confidence 1126789999764
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=86.06 E-value=4.1 Score=34.00 Aligned_cols=82 Identities=20% Similarity=0.151 Sum_probs=51.9
Q ss_pred CCCCeEEEECCCcch---HHHHHHHcCCCEEEEEeCCHHHHHHHHHHhH-HHhCCCCceEEEEecHHHHHH--H-Hhhhc
Q 021116 154 LRPGRWLDLYSGTGS---VGIEAISRGCSEVHFVEMDPWVVSNVLIPNL-EWTGFLDVSSIHTVRVETFLE--R-AEQFV 226 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~---l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~-~~~gl~~~v~ii~gD~~~~l~--~-~~~~~ 226 (317)
++++++|=-|++.|. ++..+++.|+ +|+.+|.+.+.+ +.+.+.+ +..|. ++..+.+|+.+... . ..+..
T Consensus 3 l~gK~~lITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~-~~~~~~l~~~~g~--~~~~~~~Dv~~~~~v~~~~~~~~ 78 (251)
T d1vl8a_ 3 LRGRVALVTGGSRGLGFGIAQGLAEAGC-SVVVASRNLEEA-SEAAQKLTEKYGV--ETMAFRCDVSNYEEVKKLLEAVK 78 (251)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHHHHHHCC--CEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHH-HHHHHHHHHHhCC--cEEEEEccCCCHHHHHHHHHHHH
Confidence 578899999977652 2334567787 699999999987 6555554 34453 47788888754211 0 00001
Q ss_pred CCCCCccEEEECC
Q 021116 227 GKDGPFDYMSVTP 239 (317)
Q Consensus 227 ~~~~~fDlV~~dP 239 (317)
..-+..|++|.+.
T Consensus 79 ~~~g~iDiLVnnA 91 (251)
T d1vl8a_ 79 EKFGKLDTVVNAA 91 (251)
T ss_dssp HHHSCCCEEEECC
T ss_pred HHcCCCCEEEECC
Confidence 1126799999875
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=86.04 E-value=5.2 Score=30.50 Aligned_cols=95 Identities=18% Similarity=0.159 Sum_probs=52.1
Q ss_pred EECCCcchHHHH----HHHcC-CCEEEEEeCCHHHHHHHHHHhHHH-hCCCCceEEEEecHHHHHHHHhhhcCCCCCccE
Q 021116 161 DLYSGTGSVGIE----AISRG-CSEVHFVEMDPWVVSNVLIPNLEW-TGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (317)
Q Consensus 161 DlgcGtG~l~Ie----aas~G-a~~V~aVDin~~al~~~ar~N~~~-~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDl 234 (317)
=+|+ |.+|.. ++.++ +.+++.+|+++..+ +.-..-+.+ ..+.....+..+|..+. ...|+
T Consensus 5 IIGa--G~VG~~~a~~l~~~~l~~el~L~Di~~~~~-~g~~~Dl~~~~~~~~~~~~~~~~~~~~-----------~~adi 70 (140)
T d1a5za1 5 IVGL--GRVGSSTAFALLMKGFAREMVLIDVDKKRA-EGDALDLIHGTPFTRRANIYAGDYADL-----------KGSDV 70 (140)
T ss_dssp EECC--SHHHHHHHHHHHHHTCCSEEEEECSSHHHH-HHHHHHHHHHGGGSCCCEEEECCGGGG-----------TTCSE
T ss_pred EECc--CHHHHHHHHHHHhCCCCCEEEEEecccccc-cchhccccccccccccccccCCcHHHh-----------cCCCE
Confidence 3454 555543 23344 56899999998776 432222222 12233456666775443 34688
Q ss_pred EEEC--CCCCCcc------------HHHHHHHHHHcCCcCCCeEEEEEeCCC
Q 021116 235 MSVT--PPYTAVD------------YEVLMAQISKSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 235 V~~d--PPy~~~~------------~~~~l~~L~~~~lLkpgG~ivv~~~~~ 272 (317)
|++- .|...+. +.++.+.+. -..|++++++..++-
T Consensus 71 vvitag~~~~~g~~r~dl~~~N~~I~~~i~~~i~---~~~p~aivivvtNPv 119 (140)
T d1a5za1 71 VIVAAGVPQKPGETRLQLLGRNARVMKEIARNVS---KYAPDSIVIVVTNPV 119 (140)
T ss_dssp EEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHH---HHCTTCEEEECSSSH
T ss_pred EEEecccccCCCcchhhhhccccchHHHHHHHHH---hcCCCcEEEEeCCcH
Confidence 8873 4444331 223334444 357999988876643
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=85.68 E-value=2.6 Score=35.44 Aligned_cols=82 Identities=17% Similarity=0.165 Sum_probs=53.7
Q ss_pred CCCCeEEEECCCcchHHHH----HHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHH--H-Hhhhc
Q 021116 154 LRPGRWLDLYSGTGSVGIE----AISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE--R-AEQFV 226 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ie----aas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~--~-~~~~~ 226 (317)
++|+++|=-|++.| +|.+ +++.|+ +|+.++.+++.+ +.+.+.++..|. ++..+++|+.+... . ..+..
T Consensus 9 L~gK~alITGas~G-IG~aia~~la~~Ga-~V~~~~r~~~~~-~~~~~~l~~~g~--~~~~~~~Dvs~~~~~~~~~~~~~ 83 (255)
T d1fmca_ 9 LDGKCAIITGAGAG-IGKEIAITFATAGA-SVVVSDINADAA-NHVVDEIQQLGG--QAFACRCDITSEQELSALADFAI 83 (255)
T ss_dssp CTTCEEEETTTTSH-HHHHHHHHHHTTTC-EEEEEESCHHHH-HHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcH-HHHHHHHHHHHCCC-EEEEEECCHHHH-HHHHHHHHHcCC--cEEEEEccCCCHHHHHHHHHHHH
Confidence 57888887776554 4443 445676 699999999998 888777777653 47888998754321 1 00001
Q ss_pred CCCCCccEEEECCC
Q 021116 227 GKDGPFDYMSVTPP 240 (317)
Q Consensus 227 ~~~~~fDlV~~dPP 240 (317)
..-+..|+++.+.-
T Consensus 84 ~~~g~iDilvnnAG 97 (255)
T d1fmca_ 84 SKLGKVDILVNNAG 97 (255)
T ss_dssp HHHSSCCEEEECCC
T ss_pred HHcCCCCEeeeCCc
Confidence 11267999998753
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=84.26 E-value=3.4 Score=34.50 Aligned_cols=79 Identities=18% Similarity=0.168 Sum_probs=51.1
Q ss_pred CCeEEEECCCcchHHH----HHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHH---HHhhhcCC
Q 021116 156 PGRWLDLYSGTGSVGI----EAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE---RAEQFVGK 228 (317)
Q Consensus 156 ~~rVLDlgcGtG~l~I----eaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~---~~~~~~~~ 228 (317)
++.+|=-|++.| +|. .+++.|+ +|+.+|.+++.+ +.+.+.++..|. ++.++.+|+.+... ...+....
T Consensus 2 gKValITGas~G-IG~aia~~la~~Ga-~V~i~~r~~~~l-~~~~~~l~~~g~--~~~~~~~Dvs~~~~v~~~~~~~~~~ 76 (257)
T d2rhca1 2 SEVALVTGATSG-IGLEIARRLGKEGL-RVFVCARGEEGL-RTTLKELREAGV--EADGRTCDVRSVPEIEALVAAVVER 76 (257)
T ss_dssp CCEEEEESCSSH-HHHHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCH-HHHHHHHHHHHCCC-EEEEEECCHHHH-HHHHHHHHhcCC--cEEEEEeecCCHHHHHHHHHHHHHH
Confidence 455566676544 343 3456786 699999999998 888888877664 47888988754321 11111112
Q ss_pred CCCccEEEECC
Q 021116 229 DGPFDYMSVTP 239 (317)
Q Consensus 229 ~~~fDlV~~dP 239 (317)
-+..|+++.|.
T Consensus 77 ~g~iDilVnnA 87 (257)
T d2rhca1 77 YGPVDVLVNNA 87 (257)
T ss_dssp TCSCSEEEECC
T ss_pred hCCCCEEEecc
Confidence 36799999874
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=83.37 E-value=3 Score=33.08 Aligned_cols=96 Identities=18% Similarity=0.063 Sum_probs=56.0
Q ss_pred CCeEEEEC--CCcchHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCc
Q 021116 156 PGRWLDLY--SGTGSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF 232 (317)
Q Consensus 156 ~~rVLDlg--cGtG~l~Ieaas-~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~f 232 (317)
++.||=.| .|.|.+++.+++ .|+..|+++..+++.. ..+.. .+|.+.-+..-..|..+.+.... ...+
T Consensus 31 ~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~-~~l~~---~~gad~vi~~~~~~~~~~~~~~~-----~~Gv 101 (187)
T d1vj1a2 31 NQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKC-LFLTS---ELGFDAAVNYKTGNVAEQLREAC-----PGGV 101 (187)
T ss_dssp CCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHH-HHHHH---HSCCSEEEETTSSCHHHHHHHHC-----TTCE
T ss_pred CCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHH-hhhhh---cccceEEeeccchhHHHHHHHHh-----ccCc
Confidence 46788765 467788888776 6888888888777664 33322 34543211112234444444432 3569
Q ss_pred cEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEE
Q 021116 233 DYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVE 268 (317)
Q Consensus 233 DlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~ 268 (317)
|+|| |+- + .+.++... +.|+++|++++.
T Consensus 102 Dvv~-D~v---G--g~~~~~~~--~~l~~~G~iv~~ 129 (187)
T d1vj1a2 102 DVYF-DNV---G--GDISNTVI--SQMNENSHIILC 129 (187)
T ss_dssp EEEE-ESS---C--HHHHHHHH--TTEEEEEEEEEC
T ss_pred eEEE-ecC---C--chhHHHHh--hhccccccEEEe
Confidence 9987 431 1 22344433 479999999864
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=83.17 E-value=3.2 Score=34.93 Aligned_cols=81 Identities=15% Similarity=0.096 Sum_probs=51.5
Q ss_pred CCCCCeEEEECCCcc---hHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHH--H-Hhhhc
Q 021116 153 SLRPGRWLDLYSGTG---SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE--R-AEQFV 226 (317)
Q Consensus 153 ~~~~~rVLDlgcGtG---~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~--~-~~~~~ 226 (317)
+++++++|=-|++.| .++..+++.|+ +|+.+|.+++.+ +.+.+.+ + +++.++++|+.+... . ..+..
T Consensus 2 dL~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~-~~~~~~~---~--~~~~~~~~Dv~~~~~v~~~~~~~~ 74 (254)
T d1hdca_ 2 DLSGKTVIITGGARGLGAEAARQAVAAGA-RVVLADVLDEEG-AATAREL---G--DAARYQHLDVTIEEDWQRVVAYAR 74 (254)
T ss_dssp CCCCSEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHH-HHHHHTT---G--GGEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHH-HHHHHHh---C--CceEEEEcccCCHHHHHHHHHHHH
Confidence 367899999998776 23344567787 699999999887 5544332 2 457888888753221 0 00000
Q ss_pred CCCCCccEEEECCC
Q 021116 227 GKDGPFDYMSVTPP 240 (317)
Q Consensus 227 ~~~~~fDlV~~dPP 240 (317)
..-+..|++|.+.-
T Consensus 75 ~~~g~iDilVnnAg 88 (254)
T d1hdca_ 75 EEFGSVDGLVNNAG 88 (254)
T ss_dssp HHHSCCCEEEECCC
T ss_pred HHcCCccEEEecCc
Confidence 11257899998753
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=83.15 E-value=2 Score=36.22 Aligned_cols=81 Identities=11% Similarity=0.020 Sum_probs=54.4
Q ss_pred CCCCeEEEECCCcc---hHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHH------HHHhh
Q 021116 154 LRPGRWLDLYSGTG---SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL------ERAEQ 224 (317)
Q Consensus 154 ~~~~rVLDlgcGtG---~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l------~~~~~ 224 (317)
++++++|=.|+..| .++..+++.|+ +|+.++.+++.+ +.+.+.++..+. ++.++..|+.+.- ....+
T Consensus 4 L~gK~alITGas~GIG~aia~~la~~G~-~V~i~~r~~~~l-~~~~~~~~~~~~--~~~~~~~D~s~~~~~~~~~~~~~~ 79 (258)
T d1ae1a_ 4 LKGTTALVTGGSKGIGYAIVEELAGLGA-RVYTCSRNEKEL-DECLEIWREKGL--NVEGSVCDLLSRTERDKLMQTVAH 79 (258)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHH-HHHHHHHHhcCC--CceEEEeecCCHHHHHHHHHHHHH
Confidence 57899999987655 22334556787 799999999998 777777777664 4778888875432 11110
Q ss_pred hcCCCCCccEEEECCC
Q 021116 225 FVGKDGPFDYMSVTPP 240 (317)
Q Consensus 225 ~~~~~~~fDlV~~dPP 240 (317)
..++..|+++.+..
T Consensus 80 --~~~g~idilinnag 93 (258)
T d1ae1a_ 80 --VFDGKLNILVNNAG 93 (258)
T ss_dssp --HTTSCCCEEEECCC
T ss_pred --HhCCCcEEEecccc
Confidence 11356888887654
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=83.07 E-value=1.7 Score=32.65 Aligned_cols=61 Identities=16% Similarity=0.238 Sum_probs=40.5
Q ss_pred CCcchHHHHHH----HcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHH--HHHHhhhcCCCCCccEEEE
Q 021116 164 SGTGSVGIEAI----SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF--LERAEQFVGKDGPFDYMSV 237 (317)
Q Consensus 164 cGtG~l~Ieaa----s~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~--l~~~~~~~~~~~~fDlV~~ 237 (317)
||.|.+|..++ +.|. .|+.||.|++.+ +.+++. ++ +.++.||+.+. +... .-...|.+++
T Consensus 6 ~G~G~~G~~la~~L~~~g~-~v~vid~d~~~~-~~~~~~---~~----~~vi~Gd~~~~~~l~~~-----~i~~a~~vv~ 71 (132)
T d1lssa_ 6 AGIGRVGYTLAKSLSEKGH-DIVLIDIDKDIC-KKASAE---ID----ALVINGDCTKIKTLEDA-----GIEDADMYIA 71 (132)
T ss_dssp ECCSHHHHHHHHHHHHTTC-EEEEEESCHHHH-HHHHHH---CS----SEEEESCTTSHHHHHHT-----TTTTCSEEEE
T ss_pred ECCCHHHHHHHHHHHHCCC-CcceecCChhhh-hhhhhh---hh----hhhccCcccchhhhhhc-----Chhhhhhhcc
Confidence 56788887644 3454 699999999998 666442 22 46788997654 3322 1256888887
Q ss_pred C
Q 021116 238 T 238 (317)
Q Consensus 238 d 238 (317)
-
T Consensus 72 ~ 72 (132)
T d1lssa_ 72 V 72 (132)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=82.96 E-value=2.9 Score=32.25 Aligned_cols=80 Identities=11% Similarity=0.101 Sum_probs=48.0
Q ss_pred CcchHHHH----HHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCC
Q 021116 165 GTGSVGIE----AISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPP 240 (317)
Q Consensus 165 GtG~l~Ie----aas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPP 240 (317)
|.|.+|-. +.+.|. +|++.|.+++.+ +.+++ .++-+ ....+.. .+ ...|+||+.-|
T Consensus 7 G~G~mG~~lA~~l~~~g~-~V~~~d~~~~~~-~~a~~----~~~~~---~~~~~~~-~~----------~~~DiIilavp 66 (165)
T d2f1ka2 7 GLGLIGASLAGDLRRRGH-YLIGVSRQQSTC-EKAVE----RQLVD---EAGQDLS-LL----------QTAKIIFLCTP 66 (165)
T ss_dssp CCSHHHHHHHHHHHHTTC-EEEEECSCHHHH-HHHHH----TTSCS---EEESCGG-GG----------TTCSEEEECSC
T ss_pred eecHHHHHHHHHHHHCCC-EEEEEECCchHH-HHHHH----hhccc---eeeeecc-cc----------cccccccccCc
Confidence 55656543 334454 799999999987 76654 34322 1222322 21 46799998765
Q ss_pred CCCccHHHHHHHHHHcCCcCCCeEEEEE
Q 021116 241 YTAVDYEVLMAQISKSALVGKDSFIVVE 268 (317)
Q Consensus 241 y~~~~~~~~l~~L~~~~lLkpgG~ivv~ 268 (317)
. ...++.++.+. ..++++.+++-.
T Consensus 67 ~--~~~~~vl~~l~--~~l~~~~iv~~~ 90 (165)
T d2f1ka2 67 I--QLILPTLEKLI--PHLSPTAIVTDV 90 (165)
T ss_dssp H--HHHHHHHHHHG--GGSCTTCEEEEC
T ss_pred H--hhhhhhhhhhh--hhcccccceeec
Confidence 3 24667777775 367777766543
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=82.94 E-value=4.1 Score=33.97 Aligned_cols=82 Identities=11% Similarity=0.005 Sum_probs=52.7
Q ss_pred CCCCeEEEECCCcchHHH----HHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHH--H-Hhhhc
Q 021116 154 LRPGRWLDLYSGTGSVGI----EAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE--R-AEQFV 226 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~I----eaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~--~-~~~~~ 226 (317)
++++++|=-|++.| +|. .+++.|+ +|+.+|.+++.+ +.+.+.+.. .+++.++.+|+.+... . ..+..
T Consensus 4 L~gK~alVTGas~G-IG~aia~~la~~Ga-~V~~~~r~~~~~-~~~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~ 77 (251)
T d1zk4a1 4 LDGKVAIITGGTLG-IGLAIATKFVEEGA-KVMITGRHSDVG-EKAAKSVGT---PDQIQFFQHDSSDEDGWTKLFDATE 77 (251)
T ss_dssp TTTCEEEETTTTSH-HHHHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHHCC---TTTEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCH-HHHHHHHHHHHCCC-EEEEEECCHHHH-HHHHHHhCC---CCcEEEEEccCCCHHHHHHHHHHHH
Confidence 56888888886655 443 3456787 699999999988 777666532 3468889998754321 1 00011
Q ss_pred CCCCCccEEEECCCC
Q 021116 227 GKDGPFDYMSVTPPY 241 (317)
Q Consensus 227 ~~~~~fDlV~~dPPy 241 (317)
..-+..|+++.+.-.
T Consensus 78 ~~~G~iDiLVnnAg~ 92 (251)
T d1zk4a1 78 KAFGPVSTLVNNAGI 92 (251)
T ss_dssp HHHSSCCEEEECCCC
T ss_pred HHhCCceEEEecccc
Confidence 112678999987543
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.76 E-value=3.8 Score=34.04 Aligned_cols=79 Identities=19% Similarity=0.156 Sum_probs=51.0
Q ss_pred CCCCCeEEEECCCcc---hHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCC
Q 021116 153 SLRPGRWLDLYSGTG---SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKD 229 (317)
Q Consensus 153 ~~~~~rVLDlgcGtG---~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~ 229 (317)
.+.|+++|=-|+++| .++..+++.|+ +|+.+|.+++.+ +.+.+.+. .+..+..|+.+... ..++...-
T Consensus 4 ~L~GK~~lITGas~GIG~aia~~la~~G~-~V~~~~r~~~~l-~~~~~~~~------~~~~~~~Dv~d~~~-v~~~~~~~ 74 (244)
T d1pr9a_ 4 FLAGRRVLVTGAGKGIGRGTVQALHATGA-RVVAVSRTQADL-DSLVRECP------GIEPVCVDLGDWEA-TERALGSV 74 (244)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHST------TCEEEECCTTCHHH-HHHHHTTC
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHH-HHHHHhcC------CCeEEEEeCCCHHH-HHHHHHHh
Confidence 367999999997765 23334556787 699999999987 65544321 25677888755421 11122233
Q ss_pred CCccEEEECCC
Q 021116 230 GPFDYMSVTPP 240 (317)
Q Consensus 230 ~~fDlV~~dPP 240 (317)
++.|+++.+..
T Consensus 75 g~iDilVnnAg 85 (244)
T d1pr9a_ 75 GPVDLLVNNAA 85 (244)
T ss_dssp CCCCEEEECCC
T ss_pred CCceEEEeccc
Confidence 68999998764
|
| >d1u0sy_ c.23.1.1 (Y:) CheY protein {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: CheY protein species: Thermotoga maritima [TaxId: 2336]
Probab=82.69 E-value=4.5 Score=29.64 Aligned_cols=68 Identities=10% Similarity=0.070 Sum_probs=46.4
Q ss_pred CEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCccHHHHHHHHH
Q 021116 179 SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQIS 254 (317)
Q Consensus 179 ~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~ 254 (317)
++|..||=++... +..+.-++..|++ +.....|..+.+.... ...||+|++|--....+--++++.+.
T Consensus 2 krILivDD~~~~~-~~l~~~L~~~g~~--v~~~a~~~~~al~~~~-----~~~~dliilD~~mp~~~G~e~~~~ir 69 (118)
T d1u0sy_ 2 KRVLIVDDAAFMR-MMLKDIITKAGYE--VAGEATNGREAVEKYK-----ELKPDIVTMDITMPEMNGIDAIKEIM 69 (118)
T ss_dssp CEEEEECSCHHHH-HHHHHHHHHTTCE--EEEEESSHHHHHHHHH-----HHCCSEEEEECSCGGGCHHHHHHHHH
T ss_pred CEEEEEeCCHHHH-HHHHHHHHHcCCc--eEEEECCHHHHHHHHH-----hccCCEEEEecCCCCCCHHHHHHHHH
Confidence 4799999999997 9999989888863 3334467777665553 25799999994221123445666664
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=82.68 E-value=3.8 Score=34.53 Aligned_cols=83 Identities=14% Similarity=0.057 Sum_probs=53.2
Q ss_pred CCCCCeEEEECCCcchHHH----HHHHcCCCEEEEEeCCHHHHHHHHHHhHH-HhCCCCceEEEEecHHHHHHH---Hhh
Q 021116 153 SLRPGRWLDLYSGTGSVGI----EAISRGCSEVHFVEMDPWVVSNVLIPNLE-WTGFLDVSSIHTVRVETFLER---AEQ 224 (317)
Q Consensus 153 ~~~~~rVLDlgcGtG~l~I----eaas~Ga~~V~aVDin~~al~~~ar~N~~-~~gl~~~v~ii~gD~~~~l~~---~~~ 224 (317)
.++|+++|=-|+..| +|. .+++.|+ +|+.+|.+.+.+ +.+.+.+. ..| .++.++..|+.+...- ...
T Consensus 22 ~l~gK~alITGas~G-IG~aiA~~la~~Ga-~Vii~~r~~~~l-~~~~~~l~~~~g--~~~~~~~~D~~~~~~v~~~~~~ 96 (294)
T d1w6ua_ 22 SFQGKVAFITGGGTG-LGKGMTTLLSSLGA-QCVIASRKMDVL-KATAEQISSQTG--NKVHAIQCDVRDPDMVQNTVSE 96 (294)
T ss_dssp TTTTCEEEEETTTSH-HHHHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHHHHHHS--SCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCH-HHHHHHHHHHHcCC-EEEEEECCHHHH-HHHHHHHHHhcC--CceEEEEecccChHHHHHHhhh
Confidence 467899999987665 443 3456776 799999999987 66655553 333 3477888887543211 111
Q ss_pred hcCCCCCccEEEECCC
Q 021116 225 FVGKDGPFDYMSVTPP 240 (317)
Q Consensus 225 ~~~~~~~fDlV~~dPP 240 (317)
.....+..|+++.+.-
T Consensus 97 ~~~~~g~iDilvnnAg 112 (294)
T d1w6ua_ 97 LIKVAGHPNIVINNAA 112 (294)
T ss_dssp HHHHTCSCSEEEECCC
T ss_pred hhhhccccchhhhhhh
Confidence 1122467899998653
|
| >d2dpma_ c.66.1.28 (A:) DNA methylase DpnM {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N6 adenine-specific DNA methylase, DAM domain: DNA methylase DpnM species: Streptococcus pneumoniae [TaxId: 1313]
Probab=82.49 E-value=0.57 Score=39.76 Aligned_cols=46 Identities=7% Similarity=0.191 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHH
Q 021116 134 EVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWV 190 (317)
Q Consensus 134 ~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~a 190 (317)
.++...+...+.. .-.+.+|+|||+|++.+... ..+++.-|+|+..
T Consensus 13 ~~l~~~i~~~~p~--------~~~~yvEpF~Gggav~~~~~---~~~~viND~n~~l 58 (275)
T d2dpma_ 13 RQLLPVIRELIPK--------TYNRYFEPFVGGGALFFDLA---PKDAVINDFNAEL 58 (275)
T ss_dssp GGGHHHHHHHSCS--------SCSCEEETTCTTCHHHHHHC---CSEEEEEESCHHH
T ss_pred HHHHHHHHHhcCc--------ccCEEEeeCCCHHHHHhhhc---cCcEEEEeCCHHH
Confidence 4455555555532 23579999999999888543 3468889999875
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=82.24 E-value=3.2 Score=32.19 Aligned_cols=92 Identities=12% Similarity=0.022 Sum_probs=54.1
Q ss_pred CCCCeEEEECCCcchHHH---HHHH-cCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCC
Q 021116 154 LRPGRWLDLYSGTGSVGI---EAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKD 229 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~I---eaas-~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~ 229 (317)
.++++||=+||| .+|+ .+++ .|+ +++++|.+++.. +.++ .+|.+ .++..+-.+.... ..
T Consensus 29 ~~G~~VlI~GaG--~vG~~a~qlak~~Ga-~~i~~~~~~~~~-~~a~----~lGad---~~i~~~~~~~~~~------~~ 91 (168)
T d1uufa2 29 GPGKKVGVVGIG--GLGHMGIKLAHAMGA-HVVAFTTSEAKR-EAAK----ALGAD---EVVNSRNADEMAA------HL 91 (168)
T ss_dssp CTTCEEEEECCS--HHHHHHHHHHHHTTC-EEEEEESSGGGH-HHHH----HHTCS---EEEETTCHHHHHT------TT
T ss_pred CCCCEEEEeccc--hHHHHHHHHhhcccc-cchhhccchhHH-HHHh----ccCCc---EEEECchhhHHHH------hc
Confidence 468888888764 4554 3343 576 577899999887 7765 45653 2343322222211 23
Q ss_pred CCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 230 GPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 230 ~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
..+|.||-.-.- ...+...+ ..++++|++++.-
T Consensus 92 ~~~D~vid~~g~-~~~~~~~~------~~l~~~G~iv~~G 124 (168)
T d1uufa2 92 KSFDFILNTVAA-PHNLDDFT------TLLKRDGTMTLVG 124 (168)
T ss_dssp TCEEEEEECCSS-CCCHHHHH------TTEEEEEEEEECC
T ss_pred CCCceeeeeeec-chhHHHHH------HHHhcCCEEEEec
Confidence 579998865311 11233332 3789999998753
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=82.00 E-value=2 Score=36.24 Aligned_cols=84 Identities=14% Similarity=0.077 Sum_probs=54.8
Q ss_pred CCCCCeEEEECCCcch---HHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHH--H-Hhhhc
Q 021116 153 SLRPGRWLDLYSGTGS---VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE--R-AEQFV 226 (317)
Q Consensus 153 ~~~~~rVLDlgcGtG~---l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~--~-~~~~~ 226 (317)
+++++++|=-|++.|. ++..+++.|+ +|+.+|.|++.+ +.+.+.++..+. ++.++.+|+.+... . ..+..
T Consensus 5 ~L~GK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l-~~~~~~~~~~g~--~~~~~~~Dv~~~~~v~~~~~~~~ 80 (259)
T d2ae2a_ 5 NLEGCTALVTGGSRGIGYGIVEELASLGA-SVYTCSRNQKEL-NDCLTQWRSKGF--KVEASVCDLSSRSERQELMNTVA 80 (259)
T ss_dssp CCTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHHHHTTC--EEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHH-HHHHHHHHhcCC--CceEEEeeCCCHHHHHHHHHHHH
Confidence 3578999988877652 2334556787 699999999998 777777776653 47788888753221 1 01110
Q ss_pred C-CCCCccEEEECCC
Q 021116 227 G-KDGPFDYMSVTPP 240 (317)
Q Consensus 227 ~-~~~~fDlV~~dPP 240 (317)
. ..+..|+++.+.-
T Consensus 81 ~~~~~~idilvnnAG 95 (259)
T d2ae2a_ 81 NHFHGKLNILVNNAG 95 (259)
T ss_dssp HHTTTCCCEEEECCC
T ss_pred HHhCCCceEEEECCc
Confidence 1 1246899998753
|
| >d1zesa1 c.23.1.1 (A:3-123) PhoB receiver domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: PhoB receiver domain species: Escherichia coli [TaxId: 562]
Probab=81.44 E-value=7.9 Score=28.22 Aligned_cols=83 Identities=8% Similarity=0.091 Sum_probs=54.4
Q ss_pred CEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCccHHHHHHHHHHcCC
Q 021116 179 SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSAL 258 (317)
Q Consensus 179 ~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~l 258 (317)
++|.-||=|+... +..+.-++..|+. + ....|..+.+..+. ...||+|++|--....+-.++++.+.+...
T Consensus 1 KkILiVDD~~~~~-~~l~~~L~~~g~~--v-~~a~~~~~al~~l~-----~~~~dlil~D~~mp~~~G~~l~~~lr~~~~ 71 (121)
T d1zesa1 1 RRILVVEDEAPIR-EMVCFVLEQNGFQ--P-VEAEDYDSAVNQLN-----EPWPDLILLDWMLPGGSGIQFIKHLKRESM 71 (121)
T ss_dssp CEEEEECSCHHHH-HHHHHHHHHTTCE--E-EEECSHHHHHHHSS-----SSCCSEEEECSSCTTSCHHHHHHHHHHSTT
T ss_pred CEEEEEeCCHHHH-HHHHHHHHHCCCE--E-EEECChHHHHHHHH-----ccCCCEEEeecCCCCCCHHHHHHHHHhCcc
Confidence 3688999999997 9999999988873 3 34567777776553 467999999831111244567777764333
Q ss_pred cCCCeEEEEEeC
Q 021116 259 VGKDSFIVVEYP 270 (317)
Q Consensus 259 LkpgG~ivv~~~ 270 (317)
...--+|+++..
T Consensus 72 ~~~~pvi~lt~~ 83 (121)
T d1zesa1 72 TRDIPVVMLTAR 83 (121)
T ss_dssp TTTSCEEEEESC
T ss_pred CCCCeEEEEECC
Confidence 333334555443
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=80.80 E-value=4.2 Score=32.62 Aligned_cols=93 Identities=14% Similarity=0.129 Sum_probs=56.0
Q ss_pred CCCCeEEEECCCcchH-HHHHH-HcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCC
Q 021116 154 LRPGRWLDLYSGTGSV-GIEAI-SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGP 231 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l-~Ieaa-s~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~ 231 (317)
.+..+|+=+|+|.-.. ++..+ ..|+ .|+.+|.+++.+ +..+.-.. .+++....+-....+.. ..
T Consensus 30 v~pa~V~ViGaGvaG~~A~~~A~~lGA-~V~~~D~~~~~l-~~l~~~~~-----~~~~~~~~~~~~l~~~~-------~~ 95 (168)
T d1pjca1 30 VKPGKVVILGGGVVGTEAAKMAVGLGA-QVQIFDINVERL-SYLETLFG-----SRVELLYSNSAEIETAV-------AE 95 (168)
T ss_dssp BCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHHG-----GGSEEEECCHHHHHHHH-------HT
T ss_pred CCCcEEEEECCChHHHHHHHHHhhCCC-EEEEEeCcHHHH-HHHHHhhc-----ccceeehhhhhhHHHhh-------cc
Confidence 3578999998886433 33333 4565 799999999998 76654332 23556666555444443 46
Q ss_pred ccEEEECC--CCCCc---cHHHHHHHHHHcCCcCCCeEEE
Q 021116 232 FDYMSVTP--PYTAV---DYEVLMAQISKSALVGKDSFIV 266 (317)
Q Consensus 232 fDlV~~dP--Py~~~---~~~~~l~~L~~~~lLkpgG~iv 266 (317)
.|+||.-- |-... --++.++ .+|||.+|+
T Consensus 96 aDivI~aalipG~~aP~lIt~~mv~------~Mk~GSVIV 129 (168)
T d1pjca1 96 ADLLIGAVLVPGRRAPILVPASLVE------QMRTGSVIV 129 (168)
T ss_dssp CSEEEECCCCTTSSCCCCBCHHHHT------TSCTTCEEE
T ss_pred CcEEEEeeecCCcccCeeecHHHHh------hcCCCcEEE
Confidence 89999742 11111 1133332 578888776
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=80.55 E-value=1.7 Score=31.51 Aligned_cols=70 Identities=17% Similarity=0.151 Sum_probs=41.1
Q ss_pred CCCeEEEEC-CCcchHH--HHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCC
Q 021116 155 RPGRWLDLY-SGTGSVG--IEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGP 231 (317)
Q Consensus 155 ~~~rVLDlg-cGtG~l~--Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~ 231 (317)
..+++.=+| ||+|--+ ..+..+|. +|.+.|...... . +.+...|+ .+..++..+.+ ..
T Consensus 7 ~~~~ihfiGigG~GMs~LA~~L~~~G~-~VsGSD~~~~~~---~-~~L~~~Gi----~v~~g~~~~~i----------~~ 67 (96)
T d1p3da1 7 RVQQIHFIGIGGAGMSGIAEILLNEGY-QISGSDIADGVV---T-QRLAQAGA----KIYIGHAEEHI----------EG 67 (96)
T ss_dssp TCCEEEEETTTSTTHHHHHHHHHHHTC-EEEEEESCCSHH---H-HHHHHTTC----EEEESCCGGGG----------TT
T ss_pred hCCEEEEEEECHHHHHHHHHHHHhCCC-EEEEEeCCCChh---h-hHHHHCCC----eEEECCccccC----------CC
Confidence 345665553 4566444 44567787 699999964332 2 23334554 45555544432 45
Q ss_pred ccEEEECCCCCC
Q 021116 232 FDYMSVTPPYTA 243 (317)
Q Consensus 232 fDlV~~dPPy~~ 243 (317)
.|+|+..|....
T Consensus 68 ~d~vV~S~AI~~ 79 (96)
T d1p3da1 68 ASVVVVSSAIKD 79 (96)
T ss_dssp CSEEEECTTSCT
T ss_pred CCEEEECCCcCC
Confidence 799999886543
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=80.42 E-value=4.6 Score=33.45 Aligned_cols=77 Identities=19% Similarity=0.153 Sum_probs=49.5
Q ss_pred CCCCCeEEEECCCcchHHH----HHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCC
Q 021116 153 SLRPGRWLDLYSGTGSVGI----EAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228 (317)
Q Consensus 153 ~~~~~rVLDlgcGtG~l~I----eaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~ 228 (317)
+++|+++|=-|++.| +|. .+++.|+ +|+.+|.+++.+ +.+.+.+. .+..+..|+.+... ..+....
T Consensus 2 dl~GK~alITGas~G-IG~aia~~la~~Ga-~V~~~~r~~~~l-~~~~~~~~------~~~~~~~Dv~~~~~-v~~~~~~ 71 (242)
T d1cyda_ 2 NFSGLRALVTGAGKG-IGRDTVKALHASGA-KVVAVTRTNSDL-VSLAKECP------GIEPVCVDLGDWDA-TEKALGG 71 (242)
T ss_dssp CCTTCEEEEESTTSH-HHHHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHST------TCEEEECCTTCHHH-HHHHHTT
T ss_pred CCCCCEEEEeCCCcH-HHHHHHHHHHHCCC-EEEEEECCHHHH-HHHHHhcC------CCeEEEEeCCCHHH-HHHHHHH
Confidence 467899998887665 433 3556786 699999999887 55443321 25677888765421 1111122
Q ss_pred CCCccEEEECC
Q 021116 229 DGPFDYMSVTP 239 (317)
Q Consensus 229 ~~~fDlV~~dP 239 (317)
-++.|+++.+.
T Consensus 72 ~g~iDilVnnA 82 (242)
T d1cyda_ 72 IGPVDLLVNNA 82 (242)
T ss_dssp CCCCSEEEECC
T ss_pred cCCCeEEEECC
Confidence 36799999874
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=80.11 E-value=6.5 Score=32.61 Aligned_cols=76 Identities=18% Similarity=0.177 Sum_probs=48.9
Q ss_pred EEEECCCcchHHH----HHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHH---HhhhcCCCCC
Q 021116 159 WLDLYSGTGSVGI----EAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER---AEQFVGKDGP 231 (317)
Q Consensus 159 VLDlgcGtG~l~I----eaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~---~~~~~~~~~~ 231 (317)
+|=-|++.| +|. .+++.|+ +|+.+|.|++.+ +.+.+.++..|. ++..+.+|+.+...- .......-+.
T Consensus 4 alITGas~G-IG~aia~~la~~Ga-~V~~~~r~~~~l-~~~~~~i~~~g~--~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 78 (255)
T d1gega_ 4 ALVTGAGQG-IGKAIALRLVKDGF-AVAIADYNDATA-KAVASEINQAGG--HAVAVKVDVSDRDQVFAAVEQARKTLGG 78 (255)
T ss_dssp EEEETTTSH-HHHHHHHHHHHTTC-EEEEEESCHHHH-HHHHHHHHHTTC--CEEEEECCTTSHHHHHHHHHHHHHHTTC
T ss_pred EEEcCCccH-HHHHHHHHHHHCCC-EEEEEECCHHHH-HHHHHHHHhcCC--cEEEEEeeCCCHHHHHHHHHHHHHHhCC
Confidence 355565544 443 3456787 699999999998 888887877664 478889997643210 0011112367
Q ss_pred ccEEEECC
Q 021116 232 FDYMSVTP 239 (317)
Q Consensus 232 fDlV~~dP 239 (317)
.|+++.|.
T Consensus 79 iDilVnnA 86 (255)
T d1gega_ 79 FDVIVNNA 86 (255)
T ss_dssp CCEEEECC
T ss_pred ccEEEecc
Confidence 99999764
|